Query 018303
Match_columns 358
No_of_seqs 359 out of 3429
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 9.6E-51 2.1E-55 360.7 33.0 285 71-355 1-286 (286)
2 KOG0409 Predicted dehydrogenas 100.0 4.4E-47 9.6E-52 330.0 31.7 291 67-357 32-323 (327)
3 PRK15059 tartronate semialdehy 100.0 1.4E-44 3.1E-49 329.5 33.8 285 71-356 1-285 (292)
4 PRK15461 NADH-dependent gamma- 100.0 7.8E-44 1.7E-48 326.2 33.7 286 71-356 2-288 (296)
5 TIGR01505 tartro_sem_red 2-hyd 100.0 2.7E-42 5.9E-47 316.2 32.8 285 72-356 1-285 (291)
6 PRK11559 garR tartronate semia 100.0 6.3E-42 1.4E-46 314.7 32.9 286 71-356 3-288 (296)
7 TIGR01692 HIBADH 3-hydroxyisob 100.0 9.6E-42 2.1E-46 311.7 31.5 280 75-354 1-287 (288)
8 PLN02858 fructose-bisphosphate 100.0 3.1E-40 6.7E-45 350.2 32.8 286 71-356 5-293 (1378)
9 PLN02858 fructose-bisphosphate 100.0 6.2E-39 1.3E-43 340.4 33.9 288 69-356 323-613 (1378)
10 PRK12490 6-phosphogluconate de 100.0 1.6E-37 3.5E-42 285.0 26.7 279 71-355 1-292 (299)
11 PLN02350 phosphogluconate dehy 100.0 5E-37 1.1E-41 294.4 28.1 268 68-339 4-299 (493)
12 PRK09599 6-phosphogluconate de 100.0 2.9E-35 6.3E-40 270.5 26.3 278 71-355 1-293 (301)
13 TIGR00872 gnd_rel 6-phosphoglu 100.0 2.8E-32 6.2E-37 250.0 26.9 278 71-356 1-288 (298)
14 PTZ00142 6-phosphogluconate de 100.0 3.1E-31 6.7E-36 254.4 26.0 257 71-331 2-284 (470)
15 TIGR00873 gnd 6-phosphoglucona 100.0 1.8E-30 4E-35 249.2 23.9 255 72-330 1-279 (467)
16 PRK09287 6-phosphogluconate de 100.0 4.3E-29 9.3E-34 238.7 23.8 246 81-330 1-272 (459)
17 TIGR03026 NDP-sugDHase nucleot 100.0 1E-28 2.2E-33 236.6 25.1 255 71-339 1-298 (411)
18 COG1052 LdhA Lactate dehydroge 100.0 6E-30 1.3E-34 234.1 9.3 177 2-196 91-268 (324)
19 COG1023 Gnd Predicted 6-phosph 100.0 8.6E-28 1.9E-32 202.3 20.6 278 71-356 1-289 (300)
20 COG0111 SerA Phosphoglycerate 100.0 9.3E-29 2E-33 226.5 9.2 174 6-199 95-268 (324)
21 PF03446 NAD_binding_2: NAD bi 100.0 3.1E-28 6.7E-33 203.8 10.3 162 70-232 1-163 (163)
22 PRK14618 NAD(P)H-dependent gly 99.9 4.1E-27 8.9E-32 219.3 16.0 270 70-354 4-320 (328)
23 PRK15409 bifunctional glyoxyla 99.9 7.2E-28 1.6E-32 221.7 9.1 176 3-196 92-268 (323)
24 PRK08410 2-hydroxyacid dehydro 99.9 1.4E-27 3E-32 219.2 10.0 176 3-197 89-264 (311)
25 PLN03139 formate dehydrogenase 99.9 4.6E-27 1E-31 219.5 10.5 179 3-198 147-325 (386)
26 PRK07574 formate dehydrogenase 99.9 5.3E-27 1.2E-31 219.3 10.0 176 4-196 140-316 (385)
27 PRK06487 glycerate dehydrogena 99.9 7.3E-27 1.6E-31 215.1 10.7 175 3-197 92-266 (317)
28 PRK00094 gpsA NAD(P)H-dependen 99.9 2.5E-25 5.4E-30 207.4 18.5 272 71-354 2-322 (325)
29 PRK15182 Vi polysaccharide bio 99.9 1.8E-24 3.8E-29 206.5 24.2 255 69-338 5-294 (425)
30 PRK06932 glycerate dehydrogena 99.9 1.1E-26 2.3E-31 213.5 8.5 175 3-196 91-265 (314)
31 PRK11064 wecC UDP-N-acetyl-D-m 99.9 7.6E-24 1.7E-28 202.2 26.1 252 70-338 3-296 (415)
32 PLN02306 hydroxypyruvate reduc 99.9 2.9E-26 6.2E-31 215.0 8.7 177 3-195 112-303 (386)
33 PRK13243 glyoxylate reductase; 99.9 3.1E-26 6.8E-31 212.3 8.7 180 3-196 93-272 (333)
34 PRK06129 3-hydroxyacyl-CoA deh 99.9 6.3E-24 1.4E-28 195.9 23.9 265 71-352 3-294 (308)
35 KOG0068 D-3-phosphoglycerate d 99.9 2.7E-26 5.8E-31 202.4 7.0 175 2-197 95-269 (406)
36 PRK06436 glycerate dehydrogena 99.9 5.5E-26 1.2E-30 207.0 9.2 166 4-196 75-241 (303)
37 PF02826 2-Hacid_dh_C: D-isome 99.9 1.2E-26 2.5E-31 196.9 4.1 160 21-197 1-160 (178)
38 PRK11790 D-3-phosphoglycerate 99.9 4.8E-26 1E-30 216.2 8.7 171 3-196 101-271 (409)
39 PRK15057 UDP-glucose 6-dehydro 99.9 2.4E-23 5.2E-28 196.4 25.0 249 71-339 1-285 (388)
40 PRK14619 NAD(P)H-dependent gly 99.9 5.5E-24 1.2E-28 196.3 18.8 254 70-355 4-299 (308)
41 PLN02928 oxidoreductase family 99.9 1.6E-25 3.5E-30 208.3 8.5 174 3-196 108-294 (347)
42 PRK15469 ghrA bifunctional gly 99.9 2.1E-25 4.5E-30 204.5 8.2 162 14-196 97-258 (312)
43 PRK12480 D-lactate dehydrogena 99.9 1.8E-25 3.9E-30 206.6 7.6 172 2-195 94-265 (330)
44 TIGR01327 PGDH D-3-phosphoglyc 99.9 3.3E-25 7.1E-30 217.3 8.9 174 3-196 88-261 (525)
45 PRK13581 D-3-phosphoglycerate 99.9 9.7E-25 2.1E-29 214.0 8.3 172 4-196 91-262 (526)
46 KOG0069 Glyoxylate/hydroxypyru 99.9 7.6E-24 1.7E-28 191.4 9.8 165 15-195 120-284 (336)
47 PRK08605 D-lactate dehydrogena 99.9 5.2E-24 1.1E-28 197.6 8.0 173 2-195 94-267 (332)
48 COG0362 Gnd 6-phosphogluconate 99.9 1.7E-21 3.7E-26 175.6 21.0 256 71-330 4-284 (473)
49 PRK08229 2-dehydropantoate 2-r 99.9 4.5E-21 9.9E-26 179.8 19.8 269 71-354 3-334 (341)
50 PLN02688 pyrroline-5-carboxyla 99.9 1.4E-20 3.1E-25 170.3 20.5 250 71-341 1-264 (266)
51 COG1004 Ugd Predicted UDP-gluc 99.9 1.1E-19 2.5E-24 165.5 23.6 255 71-339 1-296 (414)
52 PLN02353 probable UDP-glucose 99.9 6.4E-19 1.4E-23 169.7 27.9 254 70-335 1-304 (473)
53 PRK15438 erythronate-4-phospha 99.9 1.5E-21 3.2E-26 181.9 9.0 152 3-196 84-239 (378)
54 PRK07679 pyrroline-5-carboxyla 99.9 3.8E-20 8.2E-25 168.5 17.9 250 70-341 3-269 (279)
55 PRK07531 bifunctional 3-hydrox 99.8 9.9E-20 2.2E-24 177.9 20.4 198 71-284 5-226 (495)
56 PRK00257 erythronate-4-phospha 99.8 3.9E-21 8.4E-26 179.7 9.4 152 3-196 84-239 (381)
57 COG0240 GpsA Glycerol-3-phosph 99.8 1.2E-19 2.6E-24 163.3 18.2 262 71-336 2-310 (329)
58 PRK12557 H(2)-dependent methyl 99.8 1.4E-18 3.1E-23 160.9 22.3 199 71-277 1-238 (342)
59 COG0677 WecC UDP-N-acetyl-D-ma 99.8 2.4E-18 5.3E-23 156.1 20.1 204 71-278 10-253 (436)
60 KOG2653 6-phosphogluconate deh 99.8 2.2E-18 4.7E-23 153.2 18.6 256 70-330 6-287 (487)
61 PF14833 NAD_binding_11: NAD-b 99.8 7.6E-19 1.6E-23 139.7 12.8 121 234-354 1-122 (122)
62 PRK09260 3-hydroxybutyryl-CoA 99.8 2.8E-18 6E-23 157.0 17.9 188 71-280 2-222 (288)
63 PRK14620 NAD(P)H-dependent gly 99.8 1E-17 2.2E-22 156.1 21.0 258 71-334 1-311 (326)
64 PRK12439 NAD(P)H-dependent gly 99.8 1.1E-17 2.4E-22 156.2 20.9 273 70-354 7-327 (341)
65 PRK07066 3-hydroxybutyryl-CoA 99.8 3.5E-17 7.6E-22 150.1 23.0 195 71-282 8-227 (321)
66 PRK08268 3-hydroxy-acyl-CoA de 99.8 7.9E-18 1.7E-22 164.3 19.3 186 71-280 8-227 (507)
67 PRK12491 pyrroline-5-carboxyla 99.8 1E-17 2.3E-22 151.2 18.2 251 71-341 3-267 (272)
68 PRK08507 prephenate dehydrogen 99.8 1E-16 2.2E-21 145.7 24.7 192 71-276 1-207 (275)
69 PRK11199 tyrA bifunctional cho 99.8 4.8E-17 1E-21 153.5 22.9 180 69-273 97-279 (374)
70 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.8 1.2E-17 2.6E-22 162.6 17.9 186 71-280 6-225 (503)
71 PRK08655 prephenate dehydrogen 99.8 1.3E-16 2.8E-21 153.3 24.3 196 71-275 1-202 (437)
72 COG0345 ProC Pyrroline-5-carbo 99.8 6.8E-17 1.5E-21 143.0 20.0 249 71-341 2-264 (266)
73 PRK11880 pyrroline-5-carboxyla 99.8 8.3E-17 1.8E-21 145.8 20.8 252 70-341 2-265 (267)
74 PRK06476 pyrroline-5-carboxyla 99.8 4.9E-17 1.1E-21 146.4 18.8 244 71-338 1-254 (258)
75 PRK07417 arogenate dehydrogena 99.8 7.2E-17 1.6E-21 146.9 20.1 175 71-253 1-188 (279)
76 PRK12921 2-dehydropantoate 2-r 99.7 9.3E-17 2E-21 148.3 19.4 255 71-338 1-301 (305)
77 PTZ00345 glycerol-3-phosphate 99.7 3.1E-16 6.6E-21 146.2 21.7 260 69-335 10-341 (365)
78 PRK06522 2-dehydropantoate 2-r 99.7 2.7E-16 5.8E-21 145.2 20.8 256 71-339 1-299 (304)
79 PRK07819 3-hydroxybutyryl-CoA 99.7 1.5E-16 3.2E-21 145.0 18.7 194 71-281 6-228 (286)
80 PLN02545 3-hydroxybutyryl-CoA 99.7 1.9E-16 4.2E-21 145.4 18.0 187 71-280 5-224 (295)
81 PRK07680 late competence prote 99.7 3.1E-16 6.7E-21 142.4 19.0 195 71-278 1-205 (273)
82 PRK06249 2-dehydropantoate 2-r 99.7 6.3E-16 1.4E-20 143.1 20.9 256 68-339 3-310 (313)
83 PRK07530 3-hydroxybutyryl-CoA 99.7 3.8E-16 8.2E-21 143.2 19.3 189 71-279 5-223 (292)
84 TIGR03376 glycerol3P_DH glycer 99.7 4.2E-16 9.1E-21 144.4 17.6 257 72-335 1-330 (342)
85 PRK06130 3-hydroxybutyryl-CoA 99.7 7.1E-16 1.5E-20 142.8 18.6 193 71-281 5-222 (311)
86 PRK08293 3-hydroxybutyryl-CoA 99.7 1.2E-15 2.6E-20 139.5 18.9 193 71-280 4-226 (287)
87 TIGR01724 hmd_rel H2-forming N 99.7 3.6E-14 7.9E-19 126.9 26.9 198 71-276 1-238 (341)
88 PRK07502 cyclohexadienyl dehyd 99.7 1.2E-14 2.6E-19 134.3 24.4 175 69-248 5-195 (307)
89 PRK06545 prephenate dehydrogen 99.7 7.2E-15 1.6E-19 138.3 22.8 195 71-277 1-212 (359)
90 PLN02256 arogenate dehydrogena 99.7 6.3E-15 1.4E-19 134.9 21.1 171 67-243 33-215 (304)
91 COG0287 TyrA Prephenate dehydr 99.7 2.6E-14 5.7E-19 128.5 23.7 172 70-246 3-185 (279)
92 PRK05808 3-hydroxybutyryl-CoA 99.7 6.2E-15 1.3E-19 134.5 20.1 193 71-280 4-223 (282)
93 PRK06035 3-hydroxyacyl-CoA deh 99.7 1.7E-15 3.6E-20 138.9 16.2 189 71-280 4-226 (291)
94 PTZ00431 pyrroline carboxylate 99.7 6.3E-15 1.4E-19 132.7 19.0 245 70-340 3-259 (260)
95 COG1893 ApbA Ketopantoate redu 99.7 1.1E-14 2.3E-19 133.5 19.7 257 71-340 1-302 (307)
96 PRK05708 2-dehydropantoate 2-r 99.6 1.7E-14 3.7E-19 132.9 20.0 258 71-340 3-299 (305)
97 PLN02712 arogenate dehydrogena 99.6 3.3E-14 7.1E-19 142.8 21.6 167 67-240 366-545 (667)
98 PRK06928 pyrroline-5-carboxyla 99.6 1.3E-14 2.8E-19 131.8 16.9 247 71-339 2-265 (277)
99 PRK07634 pyrroline-5-carboxyla 99.6 2.1E-14 4.5E-19 128.5 17.5 197 69-278 3-209 (245)
100 COG2085 Predicted dinucleotide 99.6 1E-14 2.2E-19 123.1 13.8 168 70-242 1-190 (211)
101 PRK05479 ketol-acid reductoiso 99.6 5.9E-14 1.3E-18 128.5 18.7 196 67-272 14-225 (330)
102 TIGR01915 npdG NADPH-dependent 99.6 7.5E-14 1.6E-18 122.5 15.1 169 71-246 1-203 (219)
103 PLN02712 arogenate dehydrogena 99.6 2.8E-13 6E-18 136.2 21.2 171 67-243 49-231 (667)
104 COG1250 FadB 3-hydroxyacyl-CoA 99.6 2.3E-13 4.9E-18 123.0 17.5 193 71-281 4-224 (307)
105 PRK13403 ketol-acid reductoiso 99.5 4.8E-13 1E-17 120.7 16.8 198 67-272 13-223 (335)
106 PRK08818 prephenate dehydrogen 99.5 1.4E-12 3E-17 121.8 19.8 155 70-243 4-166 (370)
107 PRK14806 bifunctional cyclohex 99.5 1.2E-12 2.7E-17 134.8 21.2 183 71-258 4-202 (735)
108 PRK11730 fadB multifunctional 99.5 7.1E-13 1.5E-17 134.9 17.2 190 71-279 314-531 (715)
109 PRK08269 3-hydroxybutyryl-CoA 99.5 7.8E-13 1.7E-17 121.9 15.7 181 81-281 1-221 (314)
110 TIGR02437 FadB fatty oxidation 99.5 1.1E-12 2.3E-17 133.4 17.2 191 70-279 313-531 (714)
111 TIGR00465 ilvC ketol-acid redu 99.5 2.1E-12 4.5E-17 118.6 17.4 195 69-278 2-217 (314)
112 PF02737 3HCDH_N: 3-hydroxyacy 99.5 1.7E-13 3.6E-18 116.2 8.0 152 72-232 1-179 (180)
113 KOG2304 3-hydroxyacyl-CoA dehy 99.5 2.4E-13 5.2E-18 114.4 8.3 196 67-281 8-238 (298)
114 TIGR02441 fa_ox_alpha_mit fatt 99.5 1.9E-12 4.1E-17 131.8 16.6 187 71-276 336-550 (737)
115 TIGR02440 FadJ fatty oxidation 99.4 2.5E-12 5.4E-17 130.6 17.3 188 70-276 304-520 (699)
116 PRK11154 fadJ multifunctional 99.4 3E-12 6.5E-17 130.4 17.4 188 70-276 309-525 (708)
117 PF03807 F420_oxidored: NADP o 99.4 1.7E-13 3.6E-18 104.2 6.3 90 72-166 1-96 (96)
118 PF01210 NAD_Gly3P_dh_N: NAD-d 99.4 4.8E-13 1E-17 111.1 7.7 136 72-211 1-155 (157)
119 PTZ00075 Adenosylhomocysteinas 99.4 7.6E-13 1.7E-17 125.8 9.2 104 67-180 251-354 (476)
120 PF02153 PDH: Prephenate dehyd 99.4 2E-11 4.3E-16 109.8 16.0 157 85-246 1-172 (258)
121 PF10727 Rossmann-like: Rossma 99.4 7.1E-13 1.5E-17 104.8 5.7 111 68-185 8-122 (127)
122 PF03721 UDPG_MGDP_dh_N: UDP-g 99.4 7.3E-12 1.6E-16 106.5 11.1 121 71-194 1-156 (185)
123 TIGR00745 apbA_panE 2-dehydrop 99.3 5.4E-11 1.2E-15 109.1 17.1 243 80-338 1-291 (293)
124 TIGR00112 proC pyrroline-5-car 99.3 1.1E-10 2.4E-15 104.1 14.5 225 94-338 10-244 (245)
125 KOG2380 Prephenate dehydrogena 99.3 2.3E-10 4.9E-15 102.1 16.0 158 71-234 53-222 (480)
126 TIGR02853 spore_dpaA dipicolin 99.2 3.7E-11 8E-16 109.3 9.8 113 67-189 148-262 (287)
127 COG4007 Predicted dehydrogenas 99.2 2.7E-09 5.9E-14 91.8 19.9 197 71-275 2-238 (340)
128 KOG3124 Pyrroline-5-carboxylat 99.2 2E-09 4.4E-14 93.0 16.3 252 71-341 1-265 (267)
129 PF07991 IlvN: Acetohydroxy ac 99.1 1.6E-10 3.4E-15 93.8 7.8 90 69-162 3-93 (165)
130 PLN02494 adenosylhomocysteinas 99.1 1.8E-10 3.9E-15 109.5 9.3 104 67-177 251-355 (477)
131 PRK13302 putative L-aspartate 99.1 3.7E-10 7.9E-15 102.1 10.9 111 68-185 4-119 (271)
132 cd01065 NAD_bind_Shikimate_DH 99.1 2.6E-10 5.7E-15 94.4 9.1 115 68-188 17-138 (155)
133 KOG2666 UDP-glucose/GDP-mannos 99.1 6.9E-09 1.5E-13 91.9 17.1 244 71-323 2-290 (481)
134 TIGR00936 ahcY adenosylhomocys 99.1 5.8E-10 1.3E-14 105.2 10.8 107 67-180 192-299 (406)
135 PRK06444 prephenate dehydrogen 99.0 5.3E-08 1.2E-12 83.3 18.7 129 71-245 1-134 (197)
136 KOG2711 Glycerol-3-phosphate d 99.0 3E-08 6.5E-13 89.1 15.7 277 68-357 19-367 (372)
137 PRK08306 dipicolinate synthase 98.9 4.3E-09 9.4E-14 96.3 10.0 112 67-188 149-262 (296)
138 PF00670 AdoHcyase_NAD: S-aden 98.9 2.9E-09 6.2E-14 87.1 6.6 95 67-168 20-114 (162)
139 cd01075 NAD_bind_Leu_Phe_Val_D 98.9 1.1E-08 2.5E-13 88.2 10.5 111 67-187 25-137 (200)
140 PRK05225 ketol-acid reductoiso 98.9 3.3E-08 7.1E-13 93.1 13.8 200 67-275 33-253 (487)
141 PRK05476 S-adenosyl-L-homocyst 98.9 7.9E-09 1.7E-13 98.2 9.9 103 67-176 209-312 (425)
142 PRK13304 L-aspartate dehydroge 98.8 1.8E-08 4E-13 90.9 10.4 107 71-184 2-115 (265)
143 KOG0067 Transcription factor C 98.8 1.4E-09 2.9E-14 98.3 2.6 158 16-185 132-290 (435)
144 PRK14194 bifunctional 5,10-met 98.8 2.8E-08 6E-13 89.8 9.2 77 67-166 156-233 (301)
145 cd00401 AdoHcyase S-adenosyl-L 98.7 9.4E-08 2E-12 90.7 11.4 94 67-167 199-292 (413)
146 PRK06141 ornithine cyclodeamin 98.7 4.1E-08 8.8E-13 90.8 8.1 111 68-187 123-241 (314)
147 KOG2305 3-hydroxyacyl-CoA dehy 98.7 6.4E-07 1.4E-11 76.1 14.2 197 72-283 5-229 (313)
148 PF01408 GFO_IDH_MocA: Oxidore 98.7 1.4E-07 2.9E-12 74.5 9.2 108 71-185 1-116 (120)
149 PF01488 Shikimate_DH: Shikima 98.7 2.7E-08 5.8E-13 80.4 4.5 94 67-165 9-110 (135)
150 COG0059 IlvC Ketol-acid reduct 98.6 1.6E-07 3.5E-12 83.2 8.3 197 67-272 15-226 (338)
151 PRK14188 bifunctional 5,10-met 98.6 2.2E-07 4.7E-12 84.3 9.3 76 67-166 155-232 (296)
152 PF02558 ApbA: Ketopantoate re 98.6 8.8E-08 1.9E-12 78.9 6.1 101 73-179 1-115 (151)
153 COG1712 Predicted dinucleotide 98.5 5.1E-07 1.1E-11 76.8 9.1 94 71-171 1-98 (255)
154 TIGR00518 alaDH alanine dehydr 98.5 1.9E-07 4.2E-12 88.2 7.2 96 68-165 165-268 (370)
155 cd05213 NAD_bind_Glutamyl_tRNA 98.5 2.6E-07 5.7E-12 85.4 7.0 94 68-165 176-274 (311)
156 TIGR00507 aroE shikimate 5-deh 98.5 7.2E-07 1.6E-11 80.9 9.2 115 68-188 115-236 (270)
157 PRK14179 bifunctional 5,10-met 98.4 8.3E-07 1.8E-11 79.8 8.6 77 67-166 155-232 (284)
158 COG1748 LYS9 Saccharopine dehy 98.4 8.2E-07 1.8E-11 83.1 8.9 109 70-186 1-120 (389)
159 PF01113 DapB_N: Dihydrodipico 98.4 1.7E-06 3.8E-11 68.6 8.7 112 71-190 1-123 (124)
160 TIGR02371 ala_DH_arch alanine 98.4 1.1E-06 2.4E-11 81.6 8.7 93 69-169 127-227 (325)
161 COG5495 Uncharacterized conser 98.4 7.3E-06 1.6E-10 69.9 12.6 193 67-269 7-206 (289)
162 TIGR01921 DAP-DH diaminopimela 98.4 3.6E-06 7.8E-11 77.1 11.0 109 70-187 3-118 (324)
163 PRK00258 aroE shikimate 5-dehy 98.4 1.8E-06 3.8E-11 78.6 9.1 117 67-187 120-242 (278)
164 PRK13303 L-aspartate dehydroge 98.3 3.2E-06 6.9E-11 76.3 10.1 107 71-184 2-115 (265)
165 PRK13301 putative L-aspartate 98.3 2.9E-06 6.3E-11 75.1 9.5 104 71-182 3-114 (267)
166 PRK07340 ornithine cyclodeamin 98.3 2.9E-06 6.4E-11 78.1 9.5 95 68-171 123-224 (304)
167 PRK00048 dihydrodipicolinate r 98.3 4.2E-06 9.1E-11 75.2 10.2 99 71-176 2-104 (257)
168 TIGR01723 hmd_TIGR 5,10-methen 98.3 7.9E-05 1.7E-09 65.5 17.4 158 113-276 126-285 (340)
169 PF00984 UDPG_MGDP_dh: UDP-glu 98.3 1.2E-05 2.6E-10 60.5 10.8 90 235-335 3-94 (96)
170 PRK12549 shikimate 5-dehydroge 98.3 3.5E-06 7.6E-11 76.8 9.5 114 67-187 124-248 (284)
171 PRK00961 H(2)-dependent methyl 98.3 8.5E-05 1.8E-09 65.2 17.2 155 113-276 128-287 (342)
172 PLN00203 glutamyl-tRNA reducta 98.3 1E-06 2.2E-11 86.3 5.9 70 68-137 264-340 (519)
173 PRK08618 ornithine cyclodeamin 98.3 4.1E-06 8.9E-11 77.9 9.4 92 69-169 126-226 (325)
174 cd01080 NAD_bind_m-THF_DH_Cycl 98.3 3.8E-06 8.2E-11 70.1 8.2 80 67-169 41-121 (168)
175 PRK06407 ornithine cyclodeamin 98.2 4.1E-06 9E-11 76.9 8.2 93 69-169 116-217 (301)
176 COG0673 MviM Predicted dehydro 98.2 9.2E-06 2E-10 76.1 10.7 109 70-185 3-121 (342)
177 PRK09310 aroDE bifunctional 3- 98.2 6.5E-06 1.4E-10 80.5 9.7 106 67-187 329-437 (477)
178 PRK06823 ornithine cyclodeamin 98.2 4.9E-06 1.1E-10 76.8 8.3 94 69-170 127-228 (315)
179 COG2423 Predicted ornithine cy 98.2 7E-06 1.5E-10 75.6 8.9 111 71-189 131-250 (330)
180 PRK06046 alanine dehydrogenase 98.2 6.1E-06 1.3E-10 76.8 8.0 92 69-169 128-228 (326)
181 TIGR01763 MalateDH_bact malate 98.2 1.1E-05 2.4E-10 74.2 9.6 94 71-169 2-123 (305)
182 TIGR02992 ectoine_eutC ectoine 98.2 7.3E-06 1.6E-10 76.3 8.4 92 69-168 128-228 (326)
183 TIGR01035 hemA glutamyl-tRNA r 98.2 2.3E-06 5E-11 82.3 5.1 71 67-137 177-251 (417)
184 smart00859 Semialdhyde_dh Semi 98.1 7.4E-06 1.6E-10 64.8 7.1 92 72-167 1-102 (122)
185 TIGR00036 dapB dihydrodipicoli 98.1 2.4E-05 5.2E-10 70.6 10.8 113 71-190 2-126 (266)
186 cd01078 NAD_bind_H4MPT_DH NADP 98.1 6.7E-06 1.5E-10 70.7 6.8 99 67-171 25-136 (194)
187 PRK14189 bifunctional 5,10-met 98.1 1.2E-05 2.6E-10 72.4 8.6 77 67-166 155-232 (285)
188 PRK08291 ectoine utilization p 98.1 1.1E-05 2.5E-10 75.1 8.8 89 69-165 131-228 (330)
189 PRK14175 bifunctional 5,10-met 98.1 1.4E-05 3E-10 72.1 8.7 77 67-166 155-232 (286)
190 PRK00045 hemA glutamyl-tRNA re 98.1 4.1E-06 8.9E-11 80.8 5.4 71 68-138 180-254 (423)
191 PRK11579 putative oxidoreducta 98.1 4E-05 8.6E-10 72.1 11.6 106 71-185 5-118 (346)
192 PF02423 OCD_Mu_crystall: Orni 98.1 7E-06 1.5E-10 75.9 6.3 95 69-169 127-229 (313)
193 TIGR01761 thiaz-red thiazoliny 98.1 4.7E-05 1E-09 71.0 11.7 110 71-186 4-119 (343)
194 COG0373 HemA Glutamyl-tRNA red 98.1 1.1E-05 2.4E-10 76.1 7.4 69 67-135 175-247 (414)
195 PRK07589 ornithine cyclodeamin 98.0 9.9E-06 2.1E-10 75.5 6.9 95 70-170 129-231 (346)
196 PRK06223 malate dehydrogenase; 98.0 3E-05 6.5E-10 71.7 9.6 64 71-135 3-79 (307)
197 PF01262 AlaDh_PNT_C: Alanine 98.0 9.8E-06 2.1E-10 68.0 5.7 97 67-165 17-140 (168)
198 PLN02819 lysine-ketoglutarate 98.0 3.3E-05 7.2E-10 81.0 10.8 111 69-187 568-701 (1042)
199 PTZ00117 malate dehydrogenase; 98.0 3.4E-05 7.3E-10 71.6 9.6 93 70-167 5-125 (319)
200 PRK06199 ornithine cyclodeamin 98.0 1.3E-05 2.9E-10 75.7 6.8 92 69-165 154-260 (379)
201 PTZ00082 L-lactate dehydrogena 98.0 3.1E-05 6.7E-10 71.8 8.9 67 67-134 3-82 (321)
202 cd05191 NAD_bind_amino_acid_DH 98.0 4.2E-05 9.2E-10 56.5 7.8 66 67-164 20-86 (86)
203 PF13380 CoA_binding_2: CoA bi 97.9 3.2E-05 6.9E-10 60.5 7.1 104 71-188 1-108 (116)
204 PF02882 THF_DHG_CYH_C: Tetrah 97.9 5.3E-05 1.1E-09 62.5 8.7 79 67-168 33-112 (160)
205 COG0499 SAM1 S-adenosylhomocys 97.9 2.1E-05 4.5E-10 71.6 6.3 102 67-175 206-308 (420)
206 TIGR00561 pntA NAD(P) transhyd 97.9 3.9E-05 8.5E-10 74.7 8.6 97 68-166 162-286 (511)
207 PRK13940 glutamyl-tRNA reducta 97.9 1.8E-05 3.8E-10 75.8 6.0 71 67-137 178-253 (414)
208 PF01118 Semialdhyde_dh: Semia 97.9 3E-05 6.6E-10 61.2 6.3 89 72-167 1-100 (121)
209 cd05297 GH4_alpha_glucosidase_ 97.9 2.9E-05 6.2E-10 74.9 7.1 65 71-135 1-83 (423)
210 cd05311 NAD_bind_2_malic_enz N 97.9 0.0001 2.2E-09 64.8 9.9 108 67-184 22-145 (226)
211 PRK10206 putative oxidoreducta 97.9 9.5E-05 2.1E-09 69.5 10.1 108 71-185 2-118 (344)
212 PRK05472 redox-sensing transcr 97.9 1.8E-05 4E-10 69.0 4.9 109 69-179 83-200 (213)
213 cd05212 NAD_bind_m-THF_DH_Cycl 97.9 0.00012 2.6E-09 59.1 9.1 78 67-167 25-103 (140)
214 PRK10792 bifunctional 5,10-met 97.9 7.3E-05 1.6E-09 67.3 8.7 77 67-166 156-233 (285)
215 TIGR01809 Shik-DH-AROM shikima 97.8 9.7E-05 2.1E-09 67.3 9.4 117 68-186 123-251 (282)
216 PRK08300 acetaldehyde dehydrog 97.8 8E-05 1.7E-09 67.7 8.7 91 70-167 4-104 (302)
217 cd01076 NAD_bind_1_Glu_DH NAD( 97.8 0.00011 2.4E-09 64.5 9.4 110 67-187 28-157 (227)
218 PRK14192 bifunctional 5,10-met 97.8 7.5E-05 1.6E-09 67.7 8.5 77 67-166 156-233 (283)
219 cd05291 HicDH_like L-2-hydroxy 97.8 0.00012 2.7E-09 67.5 9.9 65 72-137 2-79 (306)
220 PRK12548 shikimate 5-dehydroge 97.8 0.00016 3.6E-09 66.1 10.5 116 67-187 123-257 (289)
221 cd01339 LDH-like_MDH L-lactate 97.8 8.2E-05 1.8E-09 68.5 8.2 62 73-135 1-75 (300)
222 TIGR03215 ac_ald_DH_ac acetald 97.8 0.00012 2.6E-09 66.3 8.6 90 71-167 2-98 (285)
223 PRK14176 bifunctional 5,10-met 97.8 0.00013 2.7E-09 65.8 8.6 77 67-166 161-238 (287)
224 PRK06349 homoserine dehydrogen 97.8 9.6E-05 2.1E-09 71.3 8.4 110 71-186 4-127 (426)
225 COG0569 TrkA K+ transport syst 97.8 6.8E-05 1.5E-09 65.9 6.7 73 71-144 1-83 (225)
226 cd00650 LDH_MDH_like NAD-depen 97.7 9.2E-05 2E-09 66.9 7.5 89 73-165 1-120 (263)
227 PRK04148 hypothetical protein; 97.7 0.00015 3.3E-09 57.7 7.8 94 69-167 16-114 (134)
228 cd05211 NAD_bind_Glu_Leu_Phe_V 97.7 0.0003 6.6E-09 61.3 10.4 111 67-187 20-148 (217)
229 PRK00066 ldh L-lactate dehydro 97.7 0.00023 4.9E-09 65.9 10.2 68 69-136 5-83 (315)
230 PRK04207 glyceraldehyde-3-phos 97.7 0.00011 2.5E-09 68.6 8.1 88 71-165 2-110 (341)
231 PRK14191 bifunctional 5,10-met 97.7 0.00014 3E-09 65.5 8.2 77 67-166 154-231 (285)
232 PRK09424 pntA NAD(P) transhydr 97.7 8E-05 1.7E-09 72.8 7.0 96 68-165 163-286 (509)
233 PF03435 Saccharop_dh: Sacchar 97.7 6.7E-05 1.5E-09 71.7 6.4 106 73-186 1-119 (386)
234 TIGR02354 thiF_fam2 thiamine b 97.7 0.00017 3.8E-09 62.1 7.6 36 67-102 18-54 (200)
235 PRK14027 quinate/shikimate deh 97.7 0.00027 5.9E-09 64.3 9.2 113 68-187 125-250 (283)
236 COG0686 Ald Alanine dehydrogen 97.6 5.4E-05 1.2E-09 67.8 4.2 96 68-165 166-269 (371)
237 COG0169 AroE Shikimate 5-dehyd 97.6 0.00028 6E-09 63.9 8.7 114 67-187 123-247 (283)
238 cd01079 NAD_bind_m-THF_DH NAD 97.6 0.0004 8.6E-09 58.7 8.8 92 67-167 59-159 (197)
239 PRK14183 bifunctional 5,10-met 97.6 0.00031 6.8E-09 63.1 8.6 77 67-166 154-231 (281)
240 PRK14178 bifunctional 5,10-met 97.6 0.00024 5.2E-09 63.8 7.7 77 67-166 149-226 (279)
241 PF03447 NAD_binding_3: Homose 97.6 0.0002 4.3E-09 56.2 6.5 102 77-185 1-114 (117)
242 cd05292 LDH_2 A subgroup of L- 97.6 0.00018 3.9E-09 66.5 7.1 66 71-137 1-78 (308)
243 PRK14982 acyl-ACP reductase; P 97.6 0.0002 4.4E-09 66.4 7.3 113 67-192 152-269 (340)
244 TIGR02717 AcCoA-syn-alpha acet 97.6 0.00063 1.4E-08 66.1 11.0 109 69-188 6-127 (447)
245 PF10100 DUF2338: Uncharacteri 97.6 0.018 3.9E-07 53.8 19.6 264 71-340 2-395 (429)
246 KOG2741 Dimeric dihydrodiol de 97.6 0.00066 1.4E-08 61.9 10.2 112 70-188 6-129 (351)
247 PRK00436 argC N-acetyl-gamma-g 97.5 0.00028 6.1E-09 66.1 8.0 91 71-169 3-104 (343)
248 TIGR01850 argC N-acetyl-gamma- 97.5 0.00032 7E-09 65.8 8.3 93 71-170 1-105 (346)
249 KOG1370 S-adenosylhomocysteine 97.5 0.00021 4.6E-09 63.7 6.5 95 67-168 211-305 (434)
250 cd05293 LDH_1 A subgroup of L- 97.5 0.00059 1.3E-08 63.0 9.8 64 71-135 4-80 (312)
251 PRK00683 murD UDP-N-acetylmura 97.5 0.0015 3.2E-08 63.1 13.1 67 71-137 4-70 (418)
252 PRK00676 hemA glutamyl-tRNA re 97.5 0.00025 5.4E-09 65.5 7.1 63 67-134 171-234 (338)
253 PF00056 Ldh_1_N: lactate/mala 97.5 9.3E-05 2E-09 60.1 3.8 65 71-135 1-78 (141)
254 TIGR02356 adenyl_thiF thiazole 97.5 0.00014 3E-09 62.9 5.0 37 67-103 18-55 (202)
255 PF02254 TrkA_N: TrkA-N domain 97.5 0.0013 2.9E-08 51.2 9.8 85 73-161 1-93 (116)
256 PRK12749 quinate/shikimate deh 97.5 0.00081 1.8E-08 61.4 9.8 115 67-187 121-254 (288)
257 TIGR01546 GAPDH-II_archae glyc 97.5 0.00025 5.4E-09 65.5 6.3 67 73-139 1-88 (333)
258 COG2910 Putative NADH-flavin r 97.5 0.00022 4.7E-09 59.2 5.2 65 71-135 1-71 (211)
259 PRK09496 trkA potassium transp 97.5 0.00033 7.2E-09 68.3 7.5 67 71-137 1-76 (453)
260 PRK10669 putative cation:proto 97.4 0.0011 2.4E-08 66.5 11.2 86 71-161 418-512 (558)
261 PRK03659 glutathione-regulated 97.4 0.00071 1.5E-08 68.3 9.7 88 70-161 400-495 (601)
262 PRK14173 bifunctional 5,10-met 97.4 0.00078 1.7E-08 60.8 8.7 77 67-166 152-229 (287)
263 PRK14177 bifunctional 5,10-met 97.4 0.00079 1.7E-08 60.6 8.7 77 67-166 156-233 (284)
264 COG0190 FolD 5,10-methylene-te 97.4 0.0007 1.5E-08 60.4 8.1 77 67-166 153-230 (283)
265 PRK14186 bifunctional 5,10-met 97.4 0.0008 1.7E-08 61.1 8.7 77 67-166 155-232 (297)
266 PRK14172 bifunctional 5,10-met 97.4 0.00082 1.8E-08 60.4 8.6 76 67-165 155-231 (278)
267 PRK14169 bifunctional 5,10-met 97.4 0.00086 1.9E-08 60.4 8.7 77 67-166 153-230 (282)
268 PRK14170 bifunctional 5,10-met 97.4 0.00088 1.9E-08 60.3 8.7 78 67-167 154-232 (284)
269 PRK02318 mannitol-1-phosphate 97.4 0.00043 9.3E-09 65.9 7.0 73 71-144 1-97 (381)
270 PRK14166 bifunctional 5,10-met 97.4 0.00092 2E-08 60.2 8.6 76 67-165 154-230 (282)
271 PRK14171 bifunctional 5,10-met 97.4 0.00096 2.1E-08 60.2 8.6 76 67-165 156-232 (288)
272 COG1064 AdhP Zn-dependent alco 97.3 0.00061 1.3E-08 62.9 7.3 89 69-165 166-260 (339)
273 PRK14190 bifunctional 5,10-met 97.3 0.00096 2.1E-08 60.2 8.4 78 67-167 155-233 (284)
274 PRK14180 bifunctional 5,10-met 97.3 0.00099 2.2E-08 60.0 8.5 76 67-165 155-231 (282)
275 PRK06718 precorrin-2 dehydroge 97.3 0.00062 1.3E-08 58.8 7.0 77 67-144 7-87 (202)
276 PRK14193 bifunctional 5,10-met 97.3 0.0011 2.5E-08 59.7 8.6 78 67-167 155-235 (284)
277 PRK11861 bifunctional prephena 97.3 0.0028 6.1E-08 64.9 12.5 119 130-252 1-131 (673)
278 PRK01390 murD UDP-N-acetylmura 97.3 0.0013 2.8E-08 64.4 9.6 67 67-133 6-72 (460)
279 PRK14187 bifunctional 5,10-met 97.3 0.0012 2.6E-08 59.8 8.5 77 67-166 157-234 (294)
280 PLN02516 methylenetetrahydrofo 97.3 0.0012 2.6E-08 59.9 8.6 77 67-166 164-241 (299)
281 cd01483 E1_enzyme_family Super 97.3 0.0026 5.7E-08 51.7 9.9 113 72-192 1-124 (143)
282 PRK06719 precorrin-2 dehydroge 97.3 0.0021 4.5E-08 53.2 9.3 75 67-144 10-87 (157)
283 PRK01710 murD UDP-N-acetylmura 97.3 0.0023 5.1E-08 62.6 11.1 116 68-183 12-144 (458)
284 PLN02602 lactate dehydrogenase 97.3 0.0025 5.5E-08 59.7 10.7 64 71-135 38-114 (350)
285 cd05294 LDH-like_MDH_nadp A la 97.3 0.0011 2.3E-08 61.3 8.2 65 71-136 1-82 (309)
286 PF03720 UDPG_MGDP_dh_C: UDP-g 97.3 0.00047 1E-08 53.1 4.9 83 80-165 17-102 (106)
287 PLN02968 Probable N-acetyl-gam 97.3 0.00085 1.9E-08 63.6 7.6 95 69-171 37-141 (381)
288 cd00300 LDH_like L-lactate deh 97.3 0.0014 3.1E-08 60.3 8.8 63 73-136 1-76 (300)
289 PLN02616 tetrahydrofolate dehy 97.3 0.0013 2.8E-08 60.9 8.4 76 67-165 228-304 (364)
290 PRK06270 homoserine dehydrogen 97.3 0.001 2.3E-08 62.3 8.1 114 71-186 3-148 (341)
291 PRK14182 bifunctional 5,10-met 97.3 0.0016 3.5E-08 58.6 8.7 77 67-166 154-231 (282)
292 PF10728 DUF2520: Domain of un 97.2 0.0039 8.5E-08 49.8 10.0 127 204-337 4-130 (132)
293 PRK14181 bifunctional 5,10-met 97.2 0.0017 3.6E-08 58.6 8.6 77 67-166 150-231 (287)
294 cd05313 NAD_bind_2_Glu_DH NAD( 97.2 0.0011 2.5E-08 58.8 7.4 111 67-187 35-175 (254)
295 PLN02897 tetrahydrofolate dehy 97.2 0.0015 3.3E-08 60.2 8.3 77 67-166 211-288 (345)
296 PRK03369 murD UDP-N-acetylmura 97.2 0.0029 6.3E-08 62.4 11.0 67 69-135 11-79 (488)
297 PRK12550 shikimate 5-dehydroge 97.2 0.0021 4.5E-08 58.2 9.1 108 70-187 122-237 (272)
298 PF02629 CoA_binding: CoA bind 97.2 0.00089 1.9E-08 50.5 5.7 72 71-144 4-79 (96)
299 PRK12475 thiamine/molybdopteri 97.2 0.00069 1.5E-08 63.3 6.1 37 67-103 21-58 (338)
300 PRK03562 glutathione-regulated 97.2 0.0021 4.6E-08 65.1 9.9 88 70-161 400-495 (621)
301 PRK05678 succinyl-CoA syntheta 97.2 0.0054 1.2E-07 55.8 11.4 111 71-190 9-124 (291)
302 PLN02520 bifunctional 3-dehydr 97.2 0.0025 5.4E-08 63.3 9.9 113 67-186 376-495 (529)
303 PF13241 NAD_binding_7: Putati 97.1 0.00059 1.3E-08 52.2 4.1 73 67-144 4-77 (103)
304 TIGR01019 sucCoAalpha succinyl 97.1 0.0063 1.4E-07 55.3 11.3 110 71-189 7-121 (286)
305 PRK09414 glutamate dehydrogena 97.1 0.003 6.5E-08 60.8 9.6 113 67-187 229-365 (445)
306 PF00208 ELFV_dehydrog: Glutam 97.1 0.0021 4.5E-08 57.1 8.0 111 67-186 29-167 (244)
307 PRK05086 malate dehydrogenase; 97.1 0.005 1.1E-07 57.0 10.8 66 71-136 1-79 (312)
308 PLN02477 glutamate dehydrogena 97.1 0.0029 6.2E-08 60.3 9.3 110 67-187 203-332 (410)
309 PRK14185 bifunctional 5,10-met 97.1 0.0025 5.4E-08 57.7 8.4 77 67-166 154-235 (293)
310 PRK06392 homoserine dehydrogen 97.1 0.0015 3.2E-08 60.6 7.2 113 71-186 1-139 (326)
311 PRK14168 bifunctional 5,10-met 97.1 0.0028 6.1E-08 57.6 8.4 77 67-166 158-239 (297)
312 COG0026 PurK Phosphoribosylami 97.1 0.0013 2.9E-08 60.6 6.4 65 71-135 2-74 (375)
313 PF13460 NAD_binding_10: NADH( 97.0 0.00087 1.9E-08 56.6 4.8 62 73-136 1-70 (183)
314 TIGR01470 cysG_Nterm siroheme 97.0 0.025 5.4E-07 49.0 13.9 69 67-136 6-79 (205)
315 PRK08374 homoserine dehydrogen 97.0 0.0028 6E-08 59.3 8.4 110 71-187 3-146 (336)
316 cd01487 E1_ThiF_like E1_ThiF_l 97.0 0.0023 5E-08 53.9 7.2 32 72-103 1-33 (174)
317 PRK08306 dipicolinate synthase 97.0 0.0044 9.5E-08 56.9 9.3 111 70-188 2-120 (296)
318 PRK14874 aspartate-semialdehyd 97.0 0.0019 4.1E-08 60.4 6.9 89 71-166 2-96 (334)
319 cd01338 MDH_choloroplast_like 97.0 0.0028 6.1E-08 58.8 7.8 66 71-136 3-88 (322)
320 TIGR01759 MalateDH-SF1 malate 97.0 0.0046 9.9E-08 57.4 9.1 66 71-136 4-89 (323)
321 PRK14167 bifunctional 5,10-met 97.0 0.0039 8.4E-08 56.6 8.4 77 67-166 154-235 (297)
322 PRK02472 murD UDP-N-acetylmura 97.0 0.01 2.3E-07 57.8 12.2 115 68-182 3-134 (447)
323 PF00393 6PGD: 6-phosphoglucon 96.9 0.0045 9.7E-08 55.9 8.5 96 236-331 1-106 (291)
324 PLN02383 aspartate semialdehyd 96.9 0.0026 5.6E-08 59.5 7.2 90 69-166 6-102 (344)
325 PLN00106 malate dehydrogenase 96.9 0.0071 1.5E-07 56.1 10.0 69 68-136 16-96 (323)
326 COG4408 Uncharacterized protei 96.9 0.17 3.8E-06 46.0 18.2 265 70-340 4-397 (431)
327 COG0771 MurD UDP-N-acetylmuram 96.9 0.0065 1.4E-07 58.4 10.0 125 69-193 6-147 (448)
328 PRK14174 bifunctional 5,10-met 96.9 0.0044 9.6E-08 56.3 8.3 77 67-166 156-237 (295)
329 PRK00141 murD UDP-N-acetylmura 96.9 0.011 2.4E-07 58.0 11.8 68 67-134 12-82 (473)
330 CHL00194 ycf39 Ycf39; Provisio 96.9 0.0022 4.7E-08 59.6 6.3 65 71-135 1-73 (317)
331 PRK14184 bifunctional 5,10-met 96.9 0.0044 9.6E-08 56.0 8.0 76 67-165 154-234 (286)
332 PRK00421 murC UDP-N-acetylmura 96.9 0.0051 1.1E-07 60.2 9.0 116 68-183 5-134 (461)
333 PRK05442 malate dehydrogenase; 96.8 0.0047 1E-07 57.3 8.1 65 71-135 5-89 (326)
334 cd01337 MDH_glyoxysomal_mitoch 96.8 0.0049 1.1E-07 56.8 7.7 95 71-166 1-119 (310)
335 PRK08644 thiamine biosynthesis 96.8 0.0044 9.5E-08 54.0 7.0 36 67-102 25-61 (212)
336 PRK15076 alpha-galactosidase; 96.8 0.0016 3.5E-08 62.9 4.7 66 71-136 2-85 (431)
337 COG4091 Predicted homoserine d 96.8 0.018 3.9E-07 52.7 10.9 41 69-109 16-58 (438)
338 TIGR01772 MDH_euk_gproteo mala 96.8 0.0059 1.3E-07 56.3 8.1 94 72-166 1-118 (312)
339 COG0289 DapB Dihydrodipicolina 96.8 0.01 2.2E-07 52.5 9.1 112 70-190 2-125 (266)
340 cd01336 MDH_cytoplasmic_cytoso 96.7 0.0095 2.1E-07 55.4 9.4 66 71-136 3-88 (325)
341 cd05290 LDH_3 A subgroup of L- 96.7 0.0034 7.3E-08 57.9 6.1 64 72-135 1-77 (307)
342 PLN00112 malate dehydrogenase 96.7 0.0068 1.5E-07 58.3 8.2 67 70-136 100-186 (444)
343 PF05368 NmrA: NmrA-like famil 96.7 0.0035 7.5E-08 55.3 5.8 64 73-136 1-74 (233)
344 PRK14106 murD UDP-N-acetylmura 96.7 0.0054 1.2E-07 59.9 7.6 68 68-135 3-77 (450)
345 COG0002 ArgC Acetylglutamate s 96.7 0.0077 1.7E-07 55.3 8.0 100 70-176 2-113 (349)
346 COG1648 CysG Siroheme synthase 96.6 0.033 7.2E-07 48.2 11.5 71 67-138 9-84 (210)
347 PRK07688 thiamine/molybdopteri 96.6 0.0069 1.5E-07 56.6 7.7 37 67-103 21-58 (339)
348 cd00704 MDH Malate dehydrogena 96.6 0.0067 1.5E-07 56.3 7.6 64 72-135 2-85 (323)
349 cd00757 ThiF_MoeB_HesA_family 96.6 0.0051 1.1E-07 54.2 6.5 37 67-103 18-55 (228)
350 PRK09496 trkA potassium transp 96.6 0.0077 1.7E-07 58.8 8.4 70 68-137 229-308 (453)
351 PRK05671 aspartate-semialdehyd 96.6 0.006 1.3E-07 56.9 7.1 88 71-167 5-100 (336)
352 TIGR03366 HpnZ_proposed putati 96.6 0.012 2.5E-07 53.6 9.0 46 69-114 120-166 (280)
353 PRK14030 glutamate dehydrogena 96.6 0.007 1.5E-07 58.1 7.6 111 67-187 225-365 (445)
354 cd01492 Aos1_SUMO Ubiquitin ac 96.6 0.0061 1.3E-07 52.4 6.6 117 67-192 18-145 (197)
355 COG2344 AT-rich DNA-binding pr 96.6 0.0031 6.6E-08 52.5 4.3 67 70-136 84-156 (211)
356 PRK05600 thiamine biosynthesis 96.6 0.0025 5.4E-08 60.3 4.3 36 67-102 38-74 (370)
357 PLN02353 probable UDP-glucose 96.6 0.022 4.8E-07 55.7 10.8 113 67-188 321-465 (473)
358 PF00899 ThiF: ThiF family; I 96.5 0.0065 1.4E-07 48.8 6.0 113 71-191 3-126 (135)
359 PRK03803 murD UDP-N-acetylmura 96.5 0.017 3.6E-07 56.4 10.0 116 70-185 6-137 (448)
360 COG0334 GdhA Glutamate dehydro 96.5 0.015 3.2E-07 54.8 8.9 110 67-187 204-333 (411)
361 PRK09880 L-idonate 5-dehydroge 96.5 0.015 3.2E-07 54.5 9.1 47 69-115 169-216 (343)
362 TIGR01771 L-LDH-NAD L-lactate 96.5 0.0095 2.1E-07 54.7 7.4 62 75-136 1-74 (299)
363 cd08230 glucose_DH Glucose deh 96.5 0.013 2.9E-07 55.1 8.7 89 69-164 172-269 (355)
364 PRK14031 glutamate dehydrogena 96.5 0.011 2.4E-07 56.8 8.0 112 67-187 225-364 (444)
365 PRK05690 molybdopterin biosynt 96.4 0.012 2.5E-07 52.5 7.6 116 67-190 29-155 (245)
366 PTZ00325 malate dehydrogenase; 96.4 0.0063 1.4E-07 56.3 5.9 69 68-136 6-86 (321)
367 cd01486 Apg7 Apg7 is an E1-lik 96.4 0.01 2.2E-07 53.9 7.1 31 72-102 1-32 (307)
368 PRK08328 hypothetical protein; 96.4 0.026 5.7E-07 49.8 9.4 118 67-192 24-153 (231)
369 TIGR01758 MDH_euk_cyt malate d 96.4 0.0099 2.2E-07 55.2 7.0 65 72-136 1-85 (324)
370 PRK11863 N-acetyl-gamma-glutam 96.3 0.013 2.8E-07 53.9 7.4 79 71-166 3-83 (313)
371 COG0460 ThrA Homoserine dehydr 96.3 0.016 3.5E-07 53.3 8.1 121 71-195 4-146 (333)
372 TIGR01296 asd_B aspartate-semi 96.3 0.006 1.3E-07 57.1 5.4 86 72-165 1-93 (339)
373 PTZ00079 NADP-specific glutama 96.3 0.018 3.9E-07 55.3 8.5 112 67-187 234-374 (454)
374 COG1063 Tdh Threonine dehydrog 96.3 0.015 3.3E-07 54.7 8.0 89 71-166 170-271 (350)
375 PF08546 ApbA_C: Ketopantoate 96.3 0.035 7.6E-07 43.8 9.0 82 249-337 39-124 (125)
376 TIGR01757 Malate-DH_plant mala 96.3 0.017 3.8E-07 54.6 8.3 67 70-136 44-130 (387)
377 PRK01438 murD UDP-N-acetylmura 96.3 0.023 5E-07 56.0 9.6 116 67-182 13-148 (480)
378 TIGR01851 argC_other N-acetyl- 96.3 0.018 3.8E-07 52.8 8.0 78 72-166 3-82 (310)
379 TIGR03855 NAD_NadX aspartate d 96.3 0.015 3.3E-07 51.1 7.3 84 96-186 5-93 (229)
380 TIGR03649 ergot_EASG ergot alk 96.3 0.0066 1.4E-07 55.2 5.4 65 72-136 1-77 (285)
381 PRK02006 murD UDP-N-acetylmura 96.3 0.011 2.3E-07 58.6 7.2 66 68-133 5-76 (498)
382 TIGR02964 xanthine_xdhC xanthi 96.3 0.02 4.2E-07 51.1 8.1 91 70-185 100-190 (246)
383 TIGR01087 murD UDP-N-acetylmur 96.3 0.024 5.2E-07 55.0 9.5 112 72-184 1-130 (433)
384 TIGR02355 moeB molybdopterin s 96.3 0.03 6.6E-07 49.7 9.2 118 67-192 21-149 (240)
385 PRK04308 murD UDP-N-acetylmura 96.3 0.039 8.4E-07 53.8 10.7 116 68-183 3-137 (445)
386 PRK08762 molybdopterin biosynt 96.2 0.012 2.5E-07 56.1 6.9 118 67-192 132-260 (376)
387 PRK06153 hypothetical protein; 96.2 0.012 2.5E-07 55.4 6.6 36 67-102 173-209 (393)
388 PF00185 OTCace: Aspartate/orn 96.2 0.035 7.7E-07 45.9 8.8 95 70-164 2-120 (158)
389 PRK01368 murD UDP-N-acetylmura 96.2 0.035 7.7E-07 54.2 10.0 114 70-184 6-132 (454)
390 PRK06019 phosphoribosylaminoim 96.2 0.012 2.7E-07 55.8 6.7 63 70-132 2-69 (372)
391 COG0300 DltE Short-chain dehyd 96.2 0.021 4.5E-07 51.1 7.6 89 67-165 3-93 (265)
392 KOG0023 Alcohol dehydrogenase, 96.1 0.011 2.4E-07 53.6 5.6 64 69-144 181-244 (360)
393 COG0039 Mdh Malate/lactate deh 96.1 0.014 3E-07 53.5 6.2 64 71-134 1-77 (313)
394 PRK06728 aspartate-semialdehyd 96.1 0.014 3E-07 54.4 6.2 89 70-166 5-101 (347)
395 PRK08265 short chain dehydroge 96.0 0.03 6.5E-07 50.2 8.2 43 67-109 3-46 (261)
396 PRK08040 putative semialdehyde 96.0 0.015 3.3E-07 54.1 6.3 90 69-166 3-99 (336)
397 COG1090 Predicted nucleoside-d 96.0 0.021 4.6E-07 50.8 6.8 60 77-136 6-66 (297)
398 PF04016 DUF364: Domain of unk 96.0 0.0067 1.5E-07 49.5 3.5 92 67-168 8-99 (147)
399 TIGR00978 asd_EA aspartate-sem 96.0 0.017 3.8E-07 54.1 6.6 89 71-166 1-106 (341)
400 TIGR01381 E1_like_apg7 E1-like 96.0 0.011 2.3E-07 59.0 5.2 35 68-102 336-371 (664)
401 PRK08223 hypothetical protein; 95.9 0.05 1.1E-06 49.3 9.0 37 67-103 24-61 (287)
402 KOG3007 Mu-crystallin [Amino a 95.9 0.028 6E-07 49.6 7.0 108 72-188 140-260 (333)
403 PLN03209 translocon at the inn 95.9 0.018 3.8E-07 57.1 6.6 41 69-109 79-120 (576)
404 TIGR03736 PRTRC_ThiF PRTRC sys 95.9 0.035 7.5E-07 49.2 7.8 35 69-103 10-55 (244)
405 PRK08664 aspartate-semialdehyd 95.9 0.028 6E-07 52.9 7.6 88 71-166 4-109 (349)
406 cd01485 E1-1_like Ubiquitin ac 95.9 0.068 1.5E-06 46.0 9.3 119 67-192 16-148 (198)
407 PRK05597 molybdopterin biosynt 95.9 0.017 3.6E-07 54.5 5.9 37 67-103 25-62 (355)
408 PRK15116 sulfur acceptor prote 95.9 0.21 4.5E-06 45.0 12.6 145 67-222 27-187 (268)
409 COG1004 Ugd Predicted UDP-gluc 95.9 0.042 9.1E-07 51.5 8.3 90 68-163 308-407 (414)
410 PRK05866 short chain dehydroge 95.9 0.037 8E-07 50.7 8.1 43 67-109 37-80 (293)
411 PRK12809 putative oxidoreducta 95.8 0.041 9E-07 56.2 9.1 37 68-104 308-344 (639)
412 PRK12769 putative oxidoreducta 95.8 0.03 6.5E-07 57.4 8.1 37 68-104 325-361 (654)
413 PRK04663 murD UDP-N-acetylmura 95.8 0.066 1.4E-06 52.1 10.1 112 71-183 8-135 (438)
414 PRK07774 short chain dehydroge 95.8 0.032 7E-07 49.4 7.3 40 67-106 3-43 (250)
415 PRK12939 short chain dehydroge 95.8 0.035 7.7E-07 49.1 7.6 42 67-108 4-46 (250)
416 PF00070 Pyr_redox: Pyridine n 95.8 0.02 4.4E-07 41.3 4.9 35 72-106 1-35 (80)
417 PLN00141 Tic62-NAD(P)-related 95.8 0.025 5.3E-07 50.5 6.5 41 67-107 14-55 (251)
418 TIGR02822 adh_fam_2 zinc-bindi 95.8 0.039 8.5E-07 51.4 8.1 90 69-165 165-255 (329)
419 TIGR01082 murC UDP-N-acetylmur 95.8 0.064 1.4E-06 52.4 9.8 112 72-183 1-126 (448)
420 COG0136 Asd Aspartate-semialde 95.8 0.053 1.2E-06 49.9 8.5 89 71-166 2-99 (334)
421 cd05188 MDR Medium chain reduc 95.7 0.058 1.3E-06 48.0 8.8 92 68-166 133-234 (271)
422 PRK06139 short chain dehydroge 95.7 0.036 7.8E-07 51.8 7.6 43 67-109 4-47 (330)
423 PRK07478 short chain dehydroge 95.7 0.04 8.7E-07 49.1 7.7 43 67-109 3-46 (254)
424 PRK05867 short chain dehydroge 95.7 0.037 8E-07 49.3 7.4 43 67-109 6-49 (253)
425 TIGR01202 bchC 2-desacetyl-2-h 95.7 0.043 9.4E-07 50.6 8.0 87 69-164 144-231 (308)
426 PRK03806 murD UDP-N-acetylmura 95.7 0.088 1.9E-06 51.2 10.4 115 68-183 4-132 (438)
427 PRK02705 murD UDP-N-acetylmura 95.7 0.075 1.6E-06 52.0 10.0 111 72-182 2-135 (459)
428 PRK06124 gluconate 5-dehydroge 95.7 0.048 1E-06 48.6 7.9 42 67-108 8-50 (256)
429 PRK07523 gluconate 5-dehydroge 95.7 0.044 9.5E-07 48.8 7.6 41 67-107 7-48 (255)
430 PRK03815 murD UDP-N-acetylmura 95.7 0.071 1.5E-06 51.2 9.4 107 71-182 1-115 (401)
431 PRK07576 short chain dehydroge 95.6 0.051 1.1E-06 48.8 7.9 41 67-107 6-47 (264)
432 PRK07454 short chain dehydroge 95.6 0.042 9.2E-07 48.4 7.3 39 70-108 6-45 (241)
433 PRK07411 hypothetical protein; 95.6 0.029 6.4E-07 53.6 6.3 36 67-102 35-71 (390)
434 PRK06200 2,3-dihydroxy-2,3-dih 95.5 0.065 1.4E-06 48.0 8.3 85 68-165 4-89 (263)
435 PLN02948 phosphoribosylaminoim 95.5 0.05 1.1E-06 54.7 8.2 69 67-135 19-92 (577)
436 PLN02427 UDP-apiose/xylose syn 95.5 0.034 7.3E-07 53.1 6.8 68 67-134 11-94 (386)
437 PLN02662 cinnamyl-alcohol dehy 95.5 0.05 1.1E-06 50.3 7.8 66 70-135 4-85 (322)
438 PRK08589 short chain dehydroge 95.5 0.06 1.3E-06 48.6 8.1 39 67-106 3-42 (272)
439 PRK05876 short chain dehydroge 95.5 0.044 9.5E-07 49.7 7.2 41 67-107 3-44 (275)
440 TIGR03026 NDP-sugDHase nucleot 95.5 0.072 1.6E-06 51.4 9.0 90 67-163 310-409 (411)
441 PRK05872 short chain dehydroge 95.5 0.085 1.8E-06 48.3 9.1 86 67-165 6-94 (296)
442 PRK08862 short chain dehydroge 95.5 0.051 1.1E-06 47.8 7.4 85 68-164 3-91 (227)
443 TIGR03201 dearomat_had 6-hydro 95.5 0.063 1.4E-06 50.4 8.4 45 69-113 166-210 (349)
444 KOG0399 Glutamate synthase [Am 95.5 0.048 1E-06 57.1 7.8 70 67-136 1782-1880(2142)
445 PRK00517 prmA ribosomal protei 95.5 0.083 1.8E-06 47.2 8.8 109 69-187 119-235 (250)
446 PRK07109 short chain dehydroge 95.5 0.052 1.1E-06 50.8 7.7 87 67-165 5-94 (334)
447 cd08239 THR_DH_like L-threonin 95.5 0.083 1.8E-06 49.3 9.1 46 69-114 163-209 (339)
448 TIGR03466 HpnA hopanoid-associ 95.5 0.023 5E-07 52.5 5.3 65 71-135 1-73 (328)
449 PRK06182 short chain dehydroge 95.5 0.079 1.7E-06 47.8 8.7 40 70-109 3-43 (273)
450 PRK07890 short chain dehydroge 95.5 0.049 1.1E-06 48.5 7.2 40 68-107 3-43 (258)
451 PRK13394 3-hydroxybutyrate deh 95.5 0.049 1.1E-06 48.6 7.2 43 67-109 4-47 (262)
452 PRK07060 short chain dehydroge 95.5 0.038 8.2E-07 48.8 6.4 43 67-109 6-49 (245)
453 PLN00125 Succinyl-CoA ligase [ 95.4 0.21 4.6E-06 45.7 11.1 109 71-188 13-127 (300)
454 PRK07326 short chain dehydroge 95.4 0.056 1.2E-06 47.4 7.4 40 69-108 5-45 (237)
455 COG5322 Predicted dehydrogenas 95.4 0.025 5.4E-07 49.9 4.8 112 67-190 164-283 (351)
456 TIGR01318 gltD_gamma_fam gluta 95.4 0.057 1.2E-06 53.0 8.1 35 69-103 140-174 (467)
457 PRK06057 short chain dehydroge 95.4 0.095 2.1E-06 46.7 8.8 41 68-108 5-46 (255)
458 PRK05653 fabG 3-ketoacyl-(acyl 95.4 0.061 1.3E-06 47.3 7.6 40 68-107 3-43 (246)
459 PF05222 AlaDh_PNT_N: Alanine 95.4 0.2 4.4E-06 40.2 9.8 99 83-193 17-119 (136)
460 TIGR01532 E4PD_g-proteo D-eryt 95.4 0.025 5.4E-07 52.5 5.1 29 72-100 1-33 (325)
461 PRK05786 fabG 3-ketoacyl-(acyl 95.4 0.044 9.5E-07 48.2 6.5 42 68-109 3-45 (238)
462 KOG1502 Flavonol reductase/cin 95.4 0.054 1.2E-06 49.8 7.1 66 69-134 5-86 (327)
463 PRK10538 malonic semialdehyde 95.4 0.071 1.5E-06 47.3 7.8 38 71-108 1-39 (248)
464 PRK04690 murD UDP-N-acetylmura 95.3 0.12 2.6E-06 50.7 10.0 66 69-134 7-77 (468)
465 PLN02896 cinnamyl-alcohol dehy 95.3 0.042 9.1E-07 51.7 6.6 41 67-107 7-48 (353)
466 KOG0022 Alcohol dehydrogenase, 95.3 0.067 1.4E-06 48.5 7.3 55 68-122 191-246 (375)
467 PRK06598 aspartate-semialdehyd 95.3 0.048 1E-06 51.3 6.8 88 71-166 2-100 (369)
468 PRK08213 gluconate 5-dehydroge 95.3 0.066 1.4E-06 47.8 7.5 41 67-107 9-50 (259)
469 PRK12429 3-hydroxybutyrate deh 95.3 0.064 1.4E-06 47.7 7.4 41 69-109 3-44 (258)
470 PTZ00187 succinyl-CoA syntheta 95.3 0.28 6.1E-06 45.1 11.4 111 70-188 29-146 (317)
471 cd08237 ribitol-5-phosphate_DH 95.3 0.1 2.2E-06 48.9 8.9 90 69-164 163-256 (341)
472 PRK12828 short chain dehydroge 95.3 0.12 2.6E-06 45.2 8.9 40 68-107 5-45 (239)
473 PRK12826 3-ketoacyl-(acyl-carr 95.2 0.054 1.2E-06 47.9 6.7 40 67-106 3-43 (251)
474 PRK06398 aldose dehydrogenase; 95.2 0.088 1.9E-06 47.1 8.1 38 67-104 3-41 (258)
475 PRK08085 gluconate 5-dehydroge 95.2 0.079 1.7E-06 47.2 7.7 42 67-108 6-48 (254)
476 TIGR02853 spore_dpaA dipicolin 95.2 0.089 1.9E-06 48.1 8.1 109 71-187 2-118 (287)
477 PRK06197 short chain dehydroge 95.2 0.097 2.1E-06 48.2 8.5 41 67-107 13-54 (306)
478 TIGR02130 dapB_plant dihydrodi 95.2 0.18 3.8E-06 45.4 9.7 111 72-191 2-125 (275)
479 PRK07067 sorbitol dehydrogenas 95.2 0.086 1.9E-06 47.0 7.9 42 68-109 4-46 (257)
480 PRK07231 fabG 3-ketoacyl-(acyl 95.2 0.058 1.3E-06 47.7 6.8 41 68-108 3-44 (251)
481 PRK07825 short chain dehydroge 95.2 0.084 1.8E-06 47.6 7.9 42 68-109 3-45 (273)
482 COG0493 GltD NADPH-dependent g 95.2 0.073 1.6E-06 51.8 7.8 70 67-136 120-218 (457)
483 PRK06194 hypothetical protein; 95.2 0.07 1.5E-06 48.4 7.3 41 67-107 3-44 (287)
484 cd00755 YgdL_like Family of ac 95.2 0.59 1.3E-05 41.2 12.8 155 67-232 8-182 (231)
485 cd01488 Uba3_RUB Ubiquitin act 95.2 0.08 1.7E-06 48.3 7.5 31 72-102 1-32 (291)
486 PRK14573 bifunctional D-alanyl 95.2 0.093 2E-06 55.2 9.1 113 71-183 5-131 (809)
487 PRK12814 putative NADPH-depend 95.1 0.096 2.1E-06 53.7 8.9 68 69-136 192-288 (652)
488 PRK08277 D-mannonate oxidoredu 95.1 0.069 1.5E-06 48.3 7.2 41 67-107 7-48 (278)
489 PRK07814 short chain dehydroge 95.1 0.075 1.6E-06 47.7 7.3 41 68-108 8-49 (263)
490 PLN02780 ketoreductase/ oxidor 95.1 0.063 1.4E-06 49.9 7.0 40 70-109 53-93 (320)
491 PRK07984 enoyl-(acyl carrier p 95.1 0.1 2.2E-06 47.0 8.2 35 68-102 4-41 (262)
492 PF13478 XdhC_C: XdhC Rossmann 95.1 0.072 1.6E-06 42.8 6.3 32 73-104 1-32 (136)
493 cd05298 GH4_GlvA_pagL_like Gly 95.1 0.078 1.7E-06 51.3 7.6 104 71-178 1-157 (437)
494 PRK07877 hypothetical protein; 95.1 0.034 7.4E-07 56.9 5.4 75 68-144 105-213 (722)
495 cd08281 liver_ADH_like1 Zinc-d 95.1 0.086 1.9E-06 50.0 7.9 46 69-114 191-237 (371)
496 PRK09186 flagellin modificatio 95.1 0.099 2.1E-06 46.5 7.9 41 69-109 3-44 (256)
497 PLN02214 cinnamoyl-CoA reducta 95.0 0.074 1.6E-06 49.9 7.3 69 67-135 7-90 (342)
498 PLN00198 anthocyanidin reducta 95.0 0.091 2E-06 49.0 7.9 39 67-105 6-45 (338)
499 PRK07035 short chain dehydroge 95.0 0.094 2E-06 46.6 7.6 42 67-108 5-47 (252)
500 PLN02657 3,8-divinyl protochlo 95.0 0.031 6.6E-07 53.5 4.7 39 67-105 57-96 (390)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=9.6e-51 Score=360.69 Aligned_cols=285 Identities=40% Similarity=0.647 Sum_probs=277.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 149 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~ 149 (358)
++|+|||+|.||..+|++|.+.|++|.+|||++++ .+.+.+.|.....++.|+++++|+||+++|.+++++.++++...
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 47999999999999999999999999999999998 66666779999999999999999999999999999999998788
Q ss_pred ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEE
Q 018303 150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 229 (358)
Q Consensus 150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~ 229 (358)
+++.+++|+++||+|+.+|...+.+.+.++..|..++|+|+++++.....++++++++|+++.+++++++|+.+|.++++
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~ 160 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH 160 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHH
Q 018303 230 LGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKD 309 (358)
Q Consensus 230 ~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd 309 (358)
+|+.|.++..|+++|.+....++++.|++.++++.|+|++.++++++.+.+.||+++++.+++.+++|+|+|.++.+.||
T Consensus 161 ~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KD 240 (286)
T COG2084 161 VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKD 240 (286)
T ss_pred ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHH
Q 018303 310 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 355 (358)
Q Consensus 310 ~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~ 355 (358)
++++.+.+++.++++|+...+.+++..+.+.|++++|++++++.|+
T Consensus 241 l~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 241 LGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 9999999999999999999999999999999999999999999874
No 2
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=4.4e-47 Score=329.96 Aligned_cols=291 Identities=43% Similarity=0.700 Sum_probs=282.6
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
..+.++||+||+|.||..++..|.+.||+|++|||+.++.+.+++.|.....++.|+.+.||+||.++|.+.+.++++++
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g 111 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLG 111 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcC
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCEE-EEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcC
Q 018303 147 KHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK 225 (358)
Q Consensus 147 ~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~ 225 (358)
+...+..++++... ||.|+.+|....++.+++...+..++|+|+.|+...++.+.++++.+||++.+++..++|+.+|+
T Consensus 112 ~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk 191 (327)
T KOG0409|consen 112 KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGK 191 (327)
T ss_pred CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcc
Confidence 88899999999877 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhh
Q 018303 226 SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKH 305 (358)
Q Consensus 226 ~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 305 (358)
+++++|..|.+...|+++|.+.+..+..++|++.++++.|+|...+.++++.+...|+++.+..|.+.+++|.|+|....
T Consensus 192 ~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~ 271 (327)
T KOG0409|consen 192 NVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKL 271 (327)
T ss_pred eEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018303 306 QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 357 (358)
Q Consensus 306 ~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~~ 357 (358)
+.||++++.+.++..+.|+|+...+.++++.....|+++.|++.+++.++.+
T Consensus 272 m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~ 323 (327)
T KOG0409|consen 272 MVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRL 323 (327)
T ss_pred HHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999888764
No 3
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1.4e-44 Score=329.53 Aligned_cols=285 Identities=32% Similarity=0.542 Sum_probs=268.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 150 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~ 150 (358)
|+|||||+|+||..+++.|.+.|++|.+||++++ .+.+.+.|.....++.++++++|+|++|+|.+.+++.++++...+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 4799999999999999999999999999999874 566666788778899999999999999999888999998654456
Q ss_pred cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303 151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 230 (358)
Q Consensus 151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~ 230 (358)
.+.+++|+++||+|+..|...+++.+.+.+.|+.|+++|+.+++.....+.+.++++|+++.+++++++|+.+|.+++++
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~ 159 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV 159 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence 77788999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHH
Q 018303 231 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL 310 (358)
Q Consensus 231 g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~ 310 (358)
|+.|+++..|+++|.+....+.++.|++.++++.|+|++.+.+++..+.+.|++++.+.+.+..++|.++|+++.+.||+
T Consensus 160 G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl 239 (292)
T PRK15059 160 GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDL 239 (292)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303 311 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 356 (358)
Q Consensus 311 ~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~ 356 (358)
+++.+++++.|+++|+.+++.++++.+.+.|+++.|++++++++++
T Consensus 240 ~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~ 285 (292)
T PRK15059 240 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALEL 285 (292)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876
No 4
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=7.8e-44 Score=326.19 Aligned_cols=286 Identities=29% Similarity=0.477 Sum_probs=268.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 150 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~ 150 (358)
++|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.+.....++.++++++|+|++|+|.+..++.++++...+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 48999999999999999999999999999999999888888888778899999999999999999888899998654567
Q ss_pred cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303 151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 230 (358)
Q Consensus 151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~ 230 (358)
+..+++|.++||+|++.|...+.+.+.+.++++.|+++|+.+.+.....+.+.++.+|+++.+++++++|+.+|.+++++
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~ 161 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA 161 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence 77789999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhcccc-ccccCCCCCCCchhhHHHH
Q 018303 231 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-SMIESLYPTAFPLKHQQKD 309 (358)
Q Consensus 231 g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd 309 (358)
|+.|.+...|+++|.+......+++|++.++++.|+|++.+.+++..+...++.+..+.+ .+..++|.++|+++.+.||
T Consensus 162 g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD 241 (296)
T PRK15461 162 GGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKD 241 (296)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhh
Confidence 999999999999999999999999999999999999999999999988777787776654 7888999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303 310 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 356 (358)
Q Consensus 310 ~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~ 356 (358)
++++.+++++.|+++|+.+++.++++.+.++|+++.|++++++.+++
T Consensus 242 ~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 242 LGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 5
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=2.7e-42 Score=316.17 Aligned_cols=285 Identities=32% Similarity=0.570 Sum_probs=267.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccccc
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAA 151 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~ 151 (358)
+|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|.....+..+++++||+|++|+|.+.+++.++++...+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 49999999999999999999999999999999888888887877778899999999999999998888998876444566
Q ss_pred ccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEeC
Q 018303 152 SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG 231 (358)
Q Consensus 152 ~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g 231 (358)
+.+++++++||+|+..+.+.+++.+.+++.+++++++|+++.+.....+.+.++++|+++.++.++++++.+|.+++++|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g 160 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG 160 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence 77899999999999999999999999999999999999999887777788889999999999999999999999999999
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHHH
Q 018303 232 DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 311 (358)
Q Consensus 232 ~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~ 311 (358)
+.|.+...|+++|.+....+.+++|++.++++.|++++++.+++..+.+.+++++.+.+.+..++|.++|.++.+.||+.
T Consensus 161 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~ 240 (291)
T TIGR01505 161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN 240 (291)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998889999998888999999999999999999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303 312 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 356 (358)
Q Consensus 312 ~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~ 356 (358)
++.+++++.|+++|+.+++.++++.+.++|+++.|++++++++++
T Consensus 241 ~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 285 (291)
T TIGR01505 241 LALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALEL 285 (291)
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876
No 6
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=6.3e-42 Score=314.69 Aligned_cols=286 Identities=32% Similarity=0.554 Sum_probs=268.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 150 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~ 150 (358)
|+|||||+|.||..+|+.+...|++|.+|||++++.+.+.+.+...+.++++++++||+|++|+|.+.+++.++++..++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 58999999999999999999999999999999988887777788777889999999999999999888999888554557
Q ss_pred cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEe
Q 018303 151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 230 (358)
Q Consensus 151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~ 230 (358)
.+.++++++++|+|+..+...+++.+.+.+.+++|+++|++++++....+.+.++++|+++.++.+.++++.+|.+++++
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~ 162 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT 162 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEe
Confidence 77889999999999999999999999999999999999999998887888888999999999999999999999999999
Q ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHH
Q 018303 231 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL 310 (358)
Q Consensus 231 g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~ 310 (358)
|+.|.++..|+++|.+....+++++|++.++++.|++++++.+.+..+.+.|++++.+.+.+..++|.++|+++...||+
T Consensus 163 g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl 242 (296)
T PRK11559 163 GDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL 242 (296)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888899999888889889999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303 311 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 356 (358)
Q Consensus 311 ~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~ 356 (358)
+++++++++.|+++|+.+++.+.++.+.+.|+++.|++++++++++
T Consensus 243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (296)
T PRK11559 243 ANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEK 288 (296)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876
No 7
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=9.6e-42 Score=311.68 Aligned_cols=280 Identities=34% Similarity=0.514 Sum_probs=261.9
Q ss_pred EEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccC
Q 018303 75 FLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGM 154 (358)
Q Consensus 75 IIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l 154 (358)
|||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|.....++.++++++|+|++|+|.+.+++.++++..++.+.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999999988888888888788999999999999999998788899886656777788
Q ss_pred CCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEeCCcC
Q 018303 155 GPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVG 234 (358)
Q Consensus 155 ~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~~g 234 (358)
++|+++||+|+..+...+.+.+.+.+.|+.|+++|+++++.....+.+.++++|+++.+++++++|+.+|.+++++|+.|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g 160 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG 160 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhcccc-------ccccCCCCCCCchhhHH
Q 018303 235 NGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-------SMIESLYPTAFPLKHQQ 307 (358)
Q Consensus 235 ~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~ 307 (358)
.++..|+++|.+....+.+++|++.++++.|+|++.+.+++..+.+.+|++..+.+ .+..++|.++|.+..+.
T Consensus 161 ~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 240 (288)
T TIGR01692 161 AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALML 240 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999998888887775544 23568999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHH
Q 018303 308 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL 354 (358)
Q Consensus 308 kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~ 354 (358)
||++++.+++++.|+++|+.+++.++++++.++|+++.|++++++.+
T Consensus 241 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 241 KDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred hhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999876
No 8
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=3.1e-40 Score=350.20 Aligned_cols=286 Identities=21% Similarity=0.360 Sum_probs=275.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 150 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~ 150 (358)
.+|||||+|.||..||++|.+.|++|.+|||++++.+.+.+.|...++++.|++++||+||+|+|.+.+++.++++...+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~ 84 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGA 84 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhH
Confidence 58999999999999999999999999999999999999998899889999999999999999999999999999877788
Q ss_pred cccCCCCCEEEEccCCChhHHHHHHHHHHhcC--CeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeE
Q 018303 151 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATG--ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRF 228 (358)
Q Consensus 151 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~ 228 (358)
++.+++|+++||+|+..|...+++.+.+.++| +.|+++|++++++.+..+.+.++++|+++.+++++++|+.+|.+++
T Consensus 85 ~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~ 164 (1378)
T PLN02858 85 AKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLY 164 (1378)
T ss_pred HhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceE
Confidence 88899999999999999999999999999998 8999999999999999999999999999999999999999999988
Q ss_pred Ee-CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHH
Q 018303 229 YL-GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQ 307 (358)
Q Consensus 229 ~~-g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (358)
++ |+.|++...|+++|.+.+..+.+++|++.++++.|++++.+++++..+.+.||+++.+.+.+..++|.++|.++.+.
T Consensus 165 ~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~ 244 (1378)
T PLN02858 165 TFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLV 244 (1378)
T ss_pred EecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHH
Confidence 65 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303 308 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 356 (358)
Q Consensus 308 kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~ 356 (358)
||++++.+++++.|+++|+.+++.+++..+.+.|+++.|++++++.+++
T Consensus 245 KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 245 QNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998875
No 9
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=6.2e-39 Score=340.36 Aligned_cols=288 Identities=26% Similarity=0.394 Sum_probs=273.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 148 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~ 148 (358)
..++|||||+|+||..+|++|...|++|.+|||++++.+.+.+.|.....++.+++++||+|++|+|.+.+++.+++++.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 34789999999999999999999999999999999988888888877788999999999999999999999999997766
Q ss_pred cccccCCCCCEEEEccCCChhHHHHHHHHHHh--cCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCC
Q 018303 149 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS 226 (358)
Q Consensus 149 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~ 226 (358)
.+++.+++|+++||+|+..|...+++.+.+.+ +++.|+++|+++++..+..+.+.++++|+++.+++++++|+.+|.+
T Consensus 403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~ 482 (1378)
T PLN02858 403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEK 482 (1378)
T ss_pred hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCc
Confidence 77888999999999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred eEEe-CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhh
Q 018303 227 RFYL-GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKH 305 (358)
Q Consensus 227 ~~~~-g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 305 (358)
++++ |+.|.++..|+++|.+....+++++|++.++++.|+|++.+.+++..+.+.||++..+.+.+..++|.++|+++.
T Consensus 483 i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l 562 (1378)
T PLN02858 483 LYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDI 562 (1378)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHH
Confidence 8874 679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303 306 QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 356 (358)
Q Consensus 306 ~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~ 356 (358)
+.||++++.+.+++.|+++|+.+++.+++..+.+.|+++.|++++++++++
T Consensus 563 ~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 563 FVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999875
No 10
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=1.6e-37 Score=285.00 Aligned_cols=279 Identities=21% Similarity=0.300 Sum_probs=253.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhc---CCEEEEeeCChhhHhhhhccc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGK 147 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivi~~vp~~~~~~~~~~~~ 147 (358)
|+|||||+|+||..+|++|.+.|++|.+|||++++.+.+.+.|.....++++++++ +|+|++|+|.+..++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~--- 77 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI--- 77 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---
Confidence 47999999999999999999999999999999988888877788888899999876 699999999877999998
Q ss_pred ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcC--
Q 018303 148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 225 (358)
Q Consensus 148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~-- 225 (358)
.++.+.+++|+++||+|+..+.+..++.+.+.++++.|+++|+++++.....+. .++++|+++.+++++++|+.+|.
T Consensus 78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~ 156 (299)
T PRK12490 78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEG 156 (299)
T ss_pred HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcC
Confidence 678888899999999999999999999999999999999999999998888887 68899999999999999999997
Q ss_pred -CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhc-cccchhhhccccccccCCCCCCC
Q 018303 226 -SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG--LDPNVLVEVVSQG-AISAPMYSLKGPSMIESLYPTAF 301 (358)
Q Consensus 226 -~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G--~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 301 (358)
+++++|+.|.+...|+++|.+....+.+++|++.++++.| +|++.++++++.+ .+.|++++.+.+.+..+++ .+
T Consensus 157 ~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~~ 234 (299)
T PRK12490 157 PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--LA 234 (299)
T ss_pred CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--hh
Confidence 7899999999999999999999999999999999999999 9999999999964 4788999888787765443 34
Q ss_pred chhhHHHHH---HHHHHHHHhcCCCchHHHHHH-HHHHHHHHCCCCCccHHHHHHHHH
Q 018303 302 PLKHQQKDL---RLALGLAESVSQSTPIAAAAN-ELYKVAKSHGLSDEDFSAVIEALK 355 (358)
Q Consensus 302 ~~~~~~kd~---~~~~~~a~~~gi~~p~~~a~~-~~~~~a~~~g~~~~d~~~~~~~~~ 355 (358)
.++.+.||. +++++.+++.|+|+|+..++. .++....++|.+..|.+++.+++-
T Consensus 235 ~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 235 GIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred hhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 678899998 799999999999999999995 777788878888999999988764
No 11
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=5e-37 Score=294.39 Aligned_cols=268 Identities=21% Similarity=0.279 Sum_probs=241.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC----CCc---cCCCHHHHhhc---CCEEEEeeCCh
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAK---YQPSPDEVAAS---CDVTFAMLADP 137 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~---aDivi~~vp~~ 137 (358)
...++|||||+|.||..+|++|.+.|++|.+|||++++.+.+.+. |.. .+.++.|+++. +|+|++++|.+
T Consensus 4 ~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~ 83 (493)
T PLN02350 4 AALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAG 83 (493)
T ss_pred CCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCc
Confidence 334589999999999999999999999999999999998887653 433 56789999876 99999999999
Q ss_pred hhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHH
Q 018303 138 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVA 217 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~ 217 (358)
..++.++ ..+++.+++|+++||+++..+.+...+.+.+.++|++|+++|++|++..+..++ .+++||+++++++++
T Consensus 84 ~aV~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~ 159 (493)
T PLN02350 84 APVDQTI---KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIE 159 (493)
T ss_pred HHHHHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHH
Confidence 9999999 778889999999999999999999999999999999999999999999999998 789999999999999
Q ss_pred HHHHHhcC------CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---Hhhccccchhhhc
Q 018303 218 PLLDIMGK------SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEV---VSQGAISAPMYSL 287 (358)
Q Consensus 218 ~ll~~~g~------~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~---~~~~~~~s~~~~~ 287 (358)
++|+.++. +++++|+.|+++.+|+++|.+.+..+++++|++.++++ .|++++.+.++ ++.+.+.|++++.
T Consensus 160 pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei 239 (493)
T PLN02350 160 DILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEI 239 (493)
T ss_pred HHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHH
Confidence 99999985 48999999999999999999999999999999999998 59999999988 4567788999998
Q ss_pred cccccccCC-CCCCCchhhHHHHHH------HHHHHHHhcCCCchH-HHHHHHHHHHHHH
Q 018303 288 KGPSMIESL-YPTAFPLKHQQKDLR------LALGLAESVSQSTPI-AAAANELYKVAKS 339 (358)
Q Consensus 288 ~~~~~~~~~-~~~~~~~~~~~kd~~------~~~~~a~~~gi~~p~-~~a~~~~~~~a~~ 339 (358)
+.+.+..++ +.++|.++.+.||++ +..+.+.++|+|+|+ .+++.+.+.+...
T Consensus 240 ~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 240 TADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred HHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 888777664 777899999999999 999999999999999 7777766655543
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=2.9e-35 Score=270.49 Aligned_cols=278 Identities=23% Similarity=0.331 Sum_probs=246.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhc---CCEEEEeeCChhhHhhhhccc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGK 147 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivi~~vp~~~~~~~~~~~~ 147 (358)
|+|||||+|.||+.+|+.|.+.|++|.+|||++++.+.+.+.|+....+++|+++. +|+|++++|....++.++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~--- 77 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI--- 77 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---
Confidence 48999999999999999999999999999999998888888888888899998876 699999999877889998
Q ss_pred ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcC--
Q 018303 148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 225 (358)
Q Consensus 148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~-- 225 (358)
..+.+.+++|.++||++++.+....++.+.+.+.|+.|+|+|+.+++.....+. .++++|+++.+++++++|+.++.
T Consensus 78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~ 156 (301)
T PRK09599 78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRA 156 (301)
T ss_pred HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccc
Confidence 677888999999999999999999999999999999999999999998888885 78899999999999999999998
Q ss_pred --CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcc-ccchhhhccccccccCCCCCC
Q 018303 226 --SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK--VGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTA 300 (358)
Q Consensus 226 --~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~--~G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~ 300 (358)
+++++|+.|++...|+++|.+....+.++.|++.++++ .|+|++.+.++++.+. ..|++++...+.+.++ +.
T Consensus 157 ~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~---~~ 233 (301)
T PRK09599 157 EDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAED---PK 233 (301)
T ss_pred cCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcC---CC
Confidence 89999999999999999999999999999999999999 9999999999999864 6888888877766443 22
Q ss_pred Cc-hhhHHHH---HHHHHHHHHhcCCCchHHHHH-HHHHHHHHHCCCCCccHHHHHHHHH
Q 018303 301 FP-LKHQQKD---LRLALGLAESVSQSTPIAAAA-NELYKVAKSHGLSDEDFSAVIEALK 355 (358)
Q Consensus 301 ~~-~~~~~kd---~~~~~~~a~~~gi~~p~~~a~-~~~~~~a~~~g~~~~d~~~~~~~~~ 355 (358)
+. +....|| .+++++.+.+.++++|.+.++ ...+....+.|.+..|.+++.+++-
T Consensus 234 ~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg 293 (301)
T PRK09599 234 LDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFG 293 (301)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcC
Confidence 22 3334555 588999999999999999994 4558888888999999999988763
No 13
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=2.8e-32 Score=250.03 Aligned_cols=278 Identities=22% Similarity=0.273 Sum_probs=238.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHh---hcCCEEEEeeCChhhHhhhhccc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA---ASCDVTFAMLADPESAMDVACGK 147 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~aDivi~~vp~~~~~~~~~~~~ 147 (358)
|+|||||+|.||..+++.|.+.|++|.+|||++++.+.+.+.+.....+++++. +++|+|++++|.. .++.++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~--- 76 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL--- 76 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---
Confidence 489999999999999999999999999999999998888887776667777754 4589999999866 999999
Q ss_pred ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcC--
Q 018303 148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 225 (358)
Q Consensus 148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~-- 225 (358)
+++.+.+++|.++||++++.+.+...+.+.+.+.+++|+++|+++++.....+ +.++++|+++.++.++++|+.++.
T Consensus 77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~ 155 (298)
T TIGR00872 77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEE 155 (298)
T ss_pred HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcC
Confidence 78888899999999999999999999999999999999999999999888888 578999999999999999999986
Q ss_pred -CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcc-ccchhhhccccccccCCCCCCC
Q 018303 226 -SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKV--GLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTAF 301 (358)
Q Consensus 226 -~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~--G~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~ 301 (358)
.++++|+.|+++..|++.|.+....+.+++|++.++++. |+|++++.++++.+. ..|++++...+.+.+++..+.+
T Consensus 156 ~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~ 235 (298)
T TIGR00872 156 QGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEF 235 (298)
T ss_pred CCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHH
Confidence 589999999999999999999999999999999999997 579999999999875 5889999877777666554444
Q ss_pred chh-hHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018303 302 PLK-HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 356 (358)
Q Consensus 302 ~~~-~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~ 356 (358)
... ...+|.++++..+.+.|+|+|.+.+. ++.+..... .+.-...+++..|+
T Consensus 236 ~~~~~~~~~~r~~v~~a~~~g~p~P~~~~a--l~~~~~~~~-~~~~~~~~~~~~r~ 288 (298)
T TIGR00872 236 SGRVSDSGEGRWTVIAAIDLGVPAPVIATS--LQSRFASRD-LDDFANKVLAALRK 288 (298)
T ss_pred HHHHHhhccHHHHHHHHHHhCCCHHHHHHH--HHHHHHhCC-CCCcHHHHHHHHHH
Confidence 323 35677799999999999999999984 555555432 22345677777765
No 14
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-31 Score=254.41 Aligned_cols=257 Identities=19% Similarity=0.241 Sum_probs=221.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC----C--CccCCCHHHHhh---cCCEEEEeeCChhhHh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAA---SCDVTFAMLADPESAM 141 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~---~aDivi~~vp~~~~~~ 141 (358)
.+|||||+|.||+.+|++|.+.|++|.+|||++++.+.+.+. | +..+.+++|+++ ++|+|++++|.+..++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 479999999999999999999999999999999988877653 4 345779999986 4899999999999999
Q ss_pred hhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHH
Q 018303 142 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 221 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~ 221 (358)
.++ +++.+.+++|+++||++++.+.+.....+.+.++|++|+++|++|++..+..|+ .+++||+++++++++++|+
T Consensus 82 ~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~ 157 (470)
T PTZ00142 82 ETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILE 157 (470)
T ss_pred HHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHH
Confidence 999 788899999999999999999999999999999999999999999999999998 7999999999999999999
Q ss_pred HhcCC------eEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHh---hccccchhhhccccc
Q 018303 222 IMGKS------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPNVLVEVVS---QGAISAPMYSLKGPS 291 (358)
Q Consensus 222 ~~g~~------~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~~---~~~~~s~~~~~~~~~ 291 (358)
.++.+ +.++|+.|+++.+|+++|.+.+.++++++|++.+++ +.|++++++.+++. .+...|++++.....
T Consensus 158 ~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~ 237 (470)
T PTZ00142 158 KCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKI 237 (470)
T ss_pred HHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 99987 789999999999999999999999999999999998 79999999988884 667788888876555
Q ss_pred cccCCCCC-CCchhhH------HHHHHHHHHHHHhcCCCchHHHHHH
Q 018303 292 MIESLYPT-AFPLKHQ------QKDLRLALGLAESVSQSTPIAAAAN 331 (358)
Q Consensus 292 ~~~~~~~~-~~~~~~~------~kd~~~~~~~a~~~gi~~p~~~a~~ 331 (358)
+.+.|-.. +..++.. ...-++.++.|-++|+|.|++.++.
T Consensus 238 ~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~ 284 (470)
T PTZ00142 238 LAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASV 284 (470)
T ss_pred hhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHH
Confidence 54443211 1222221 1223688899999999999987653
No 15
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.97 E-value=1.8e-30 Score=249.21 Aligned_cols=255 Identities=19% Similarity=0.239 Sum_probs=219.2
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-----CCccCCCHHHHhh---cCCEEEEeeCChhhHhhh
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAA---SCDVTFAMLADPESAMDV 143 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~---~aDivi~~vp~~~~~~~~ 143 (358)
.|||||+|.||..+|++|.+.|++|.+|||++++.+.+.+. ++....++.++++ .+|+|++++|.+..++.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 38999999999999999999999999999999998887764 2456678888764 689999999988999999
Q ss_pred hcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHh
Q 018303 144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIM 223 (358)
Q Consensus 144 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~ 223 (358)
+ +++.+.+++|++|||+++..+.+.....+.+.+++++|+++|+++++..+..++ .++++|+++++++++++|+.+
T Consensus 81 i---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~i 156 (467)
T TIGR00873 81 I---NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKI 156 (467)
T ss_pred H---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHH
Confidence 9 788888999999999999999999899999999999999999999999999998 788999999999999999999
Q ss_pred cCC------eEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhccccchhhhccccccc
Q 018303 224 GKS------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPNVLVEVV---SQGAISAPMYSLKGPSMI 293 (358)
Q Consensus 224 g~~------~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~---~~~~~~s~~~~~~~~~~~ 293 (358)
+.+ ++++|+.|+++.+|+++|.+.+.++++++|++.+++ +.|++++++.+++ +.+.+.|++++...+.+.
T Consensus 157 a~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~ 236 (467)
T TIGR00873 157 AAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILK 236 (467)
T ss_pred hhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHh
Confidence 876 489999999999999999999999999999999985 7999999999988 566778899988777666
Q ss_pred cCCCCCCCchhhH------HHHHHHHHHHHHhcCCCchHHHHH
Q 018303 294 ESLYPTAFPLKHQ------QKDLRLALGLAESVSQSTPIAAAA 330 (358)
Q Consensus 294 ~~~~~~~~~~~~~------~kd~~~~~~~a~~~gi~~p~~~a~ 330 (358)
+.+-..+.-++.. ...-.+.++.+-++|+|.|++.+.
T Consensus 237 ~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~a 279 (467)
T TIGR00873 237 KKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITES 279 (467)
T ss_pred ccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHH
Confidence 6443211111111 222368889999999999997755
No 16
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.97 E-value=4.3e-29 Score=238.73 Aligned_cols=246 Identities=20% Similarity=0.242 Sum_probs=218.6
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-----CCccCCCHHHHhhc---CCEEEEeeCChhhHhhhhcccccccc
Q 018303 81 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGKHGAAS 152 (358)
Q Consensus 81 iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDivi~~vp~~~~~~~~~~~~~~~~~ 152 (358)
||..||++|.+.|++|.+|||++++.+.+.+. ++..+.++.|+++. +|+|++++|....++.++ .++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence 89999999999999999999999999888763 47788899999875 899999999999999999 78889
Q ss_pred cCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCe-----
Q 018303 153 GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR----- 227 (358)
Q Consensus 153 ~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~----- 227 (358)
.+.+|.++||+++..+.+.....+.+.++|++|+++|++|++..+..|+ .+++||++++++.++++|+.++.++
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~ 156 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEP 156 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCC
Confidence 9999999999999999999999999999999999999999999999998 7899999999999999999999876
Q ss_pred --EEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhccccchhhhccccccccCCCCCCC
Q 018303 228 --FYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIESLYPTAF 301 (358)
Q Consensus 228 --~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~ 301 (358)
.++|+.|+++.+|+++|.+.+..+++++|++.+++ +.|++++++.+++ +.+...|++++...+.+..+++..+.
T Consensus 157 c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 157 CVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 89999999999999999999999999999999999 5899999999888 46778899999888888887774332
Q ss_pred -chhhH------HHHHHHHHHHHHhcCCCchHHHHH
Q 018303 302 -PLKHQ------QKDLRLALGLAESVSQSTPIAAAA 330 (358)
Q Consensus 302 -~~~~~------~kd~~~~~~~a~~~gi~~p~~~a~ 330 (358)
-++.. ...-.+.+..|-++|+|+|++...
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~A 272 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEA 272 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHH
Confidence 22221 122368889999999999987654
No 17
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.97 E-value=1e-28 Score=236.61 Aligned_cols=255 Identities=18% Similarity=0.172 Sum_probs=207.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-------------------CC-CccCCCHHHHhhcCCEE
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT 130 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv 130 (358)
|+|+|||+|.||..+|..|+..|++|++||+++++.+.+.. .| +...+++.++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 48999999999999999999999999999999887766543 12 45566888889999999
Q ss_pred EEeeCChhh---------HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc--CCe-EecCCCCCCCCcCC
Q 018303 131 FAMLADPES---------AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GAS-FLEAPVSGSKKPAE 198 (358)
Q Consensus 131 i~~vp~~~~---------~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~-~~~~~~~~~~~~~~ 198 (358)
|+|+|.+.. +...+ ..+.+.+++++++|++|+..|...+.+...+.+. +.. +.+.++.+.|....
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence 999996643 55665 6677788999999999999998888886544333 322 33444444444444
Q ss_pred CCce--------EEEecCCHhHHHHHHHHHHHhc-CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018303 199 DGQL--------IFLAAGDKSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN 269 (358)
Q Consensus 199 ~~~~--------~~~~~g~~~~~~~v~~ll~~~g-~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~ 269 (358)
.+.. .++++++++..++++++++.++ ..++++++++.++..|++.|.+.+..+++++|+..+|++.|+|++
T Consensus 158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~ 237 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVY 237 (411)
T ss_pred CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 4443 5777889999999999999998 688899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccchhhhccccccccCCCCCCC--chhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303 270 VLVEVVSQGAISAPMYSLKGPSMIESLYPTAF--PLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS 339 (358)
Q Consensus 270 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~ 339 (358)
++.+++... +++....+.||+ ....+.||+.++.+.+++.|+++|+.++++++.+...+
T Consensus 238 ~v~~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~~~ 298 (411)
T TIGR03026 238 EVIEAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQPD 298 (411)
T ss_pred HHHHHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHhHH
Confidence 999988753 345556677765 45569999999999999999999999999888766554
No 18
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.96 E-value=6e-30 Score=234.09 Aligned_cols=177 Identities=18% Similarity=0.169 Sum_probs=154.6
Q ss_pred eeeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCC-CCCcccccccccccCCCcCCCCCCeEEEEcCCh
Q 018303 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKP-LFPLSFKVFSSQATGVSAEDELPGRIGFLGMGI 80 (358)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~ 80 (358)
++.-+|+|+++ ++||++++|+|++.|++....+.+|+|.|.... ...+.+. +++++++||||+|+
T Consensus 91 ~Vtnvp~~~t~--sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~------------~l~gktvGIiG~Gr 156 (324)
T COG1052 91 TVTNVPGYSTE--AVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGF------------DLRGKTLGIIGLGR 156 (324)
T ss_pred EEEeCCCCCch--HHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCccccccc------------CCCCCEEEEECCCH
Confidence 46677899999 999999999999999999999999999998763 2222222 78899999999999
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEE
Q 018303 81 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 160 (358)
Q Consensus 81 iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~v 160 (358)
||+++|++++.+|++|.+|+|++. .+...+.+..+.+ ++|++++||+|++++|.+++|++++ +++.++.||+|+++
T Consensus 157 IG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLi--n~~~l~~mk~ga~l 232 (324)
T COG1052 157 IGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLI--NAEELAKMKPGAIL 232 (324)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhc--CHHHHHhCCCCeEE
Confidence 999999999999999999999875 2322333455554 9999999999999999999999999 89999999999999
Q ss_pred EEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303 161 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 196 (358)
Q Consensus 161 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 196 (358)
||++||..+|++++.++|+++.+.....+++..++.
T Consensus 233 VNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~ 268 (324)
T COG1052 233 VNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPA 268 (324)
T ss_pred EECCCccccCHHHHHHHHHhCCcceEEeeecCCCCC
Confidence 999999999999999999999888888888877765
No 19
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=8.6e-28 Score=202.34 Aligned_cols=278 Identities=23% Similarity=0.326 Sum_probs=227.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhh---cCCEEEEeeCChhhHhhhhccc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA---SCDVTFAMLADPESAMDVACGK 147 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~aDivi~~vp~~~~~~~~~~~~ 147 (358)
|+||.||+|+||..+.+++...||+|.+||++++.++.+...++....++++++. ...+|.+.+|....|..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi--- 77 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI--- 77 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---
Confidence 5799999999999999999999999999999999999999989888889888764 4899999999888999999
Q ss_pred ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcC--
Q 018303 148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 225 (358)
Q Consensus 148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~-- 225 (358)
+++.+.|.+|.+|||-++..-.+.....+.+.+++++|+|+...++......+- .++++|++++++.+.++|+.+..
T Consensus 78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge 156 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGE 156 (300)
T ss_pred HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCc
Confidence 899999999999999999999999999999999999999999999998887775 58899999999999999999865
Q ss_pred -CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcc-ccchhhhccccccccC-CCCCC
Q 018303 226 -SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG--LDPNVLVEVVSQGA-ISAPMYSLKGPSMIES-LYPTA 300 (358)
Q Consensus 226 -~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G--~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~-~~~~~ 300 (358)
-..++|+.|+++.+|++.|.+.+.++++++|.+.++++.. +|.+.+.+.++.++ ..||+++.....+.+. +...-
T Consensus 157 ~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~ 236 (300)
T COG1023 157 DGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQI 236 (300)
T ss_pred CccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHh
Confidence 5779999999999999999999999999999999998855 67889999999875 4678877544333221 11000
Q ss_pred CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHH-HHHHHHHh
Q 018303 301 FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFS-AVIEALKA 356 (358)
Q Consensus 301 ~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~-~~~~~~~~ 356 (358)
...-.-..+-++-++.+-++|+|.|++... +..+-+++ .+++|+ +++.+++.
T Consensus 237 ~g~v~dSGEGrWTv~~aldlgvpaPVia~a--l~~Rf~S~--~~d~f~~kvlaalR~ 289 (300)
T COG1023 237 SGRVSDSGEGRWTVEEALDLGVPAPVIALA--LMMRFRSR--QDDTFAGKVLAALRN 289 (300)
T ss_pred cCeeccCCCceeehHHHHhcCCCchHHHHH--HHHHHhcc--chhhHHHHHHHHHHH
Confidence 000000111355677788999999998755 55565554 345565 56665554
No 20
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.95 E-value=9.3e-29 Score=226.51 Aligned_cols=174 Identities=13% Similarity=0.105 Sum_probs=148.6
Q ss_pred eccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHH
Q 018303 6 KSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPM 85 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~ 85 (358)
.|.++.. +++|+++++++++.|+++.+.+.+|+|.|.+..... . ++.+++|||||+|+||+.+
T Consensus 95 ap~~na~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g---~------------el~gkTvGIiG~G~IG~~v 157 (324)
T COG0111 95 APGGNAI--SVAELVLALLLALARRIPDADASQRRGEWDRKAFRG---T------------ELAGKTVGIIGLGRIGRAV 157 (324)
T ss_pred CCCcchH--HHHHHHHHHHHHHhcCchhhHHHHHcCCcccccccc---c------------cccCCEEEEECCCHHHHHH
Confidence 3455545 999999999999999999999999999998722111 1 6788999999999999999
Q ss_pred HHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccC
Q 018303 86 AQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 86 a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~ 165 (358)
|++++.+|++|++||+...+. .....+.....++++++++||+|++|+|.+++|++++ +++.++.||+|+++||++|
T Consensus 158 a~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i--~~~~~a~MK~gailIN~aR 234 (324)
T COG0111 158 AKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLI--NAEELAKMKPGAILINAAR 234 (324)
T ss_pred HHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhccc--CHHHHhhCCCCeEEEECCC
Confidence 999999999999999954332 2222356667899999999999999999999999999 8999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCC
Q 018303 166 VDGDTSKLINGHIKATGASFLEAPVSGSKKPAED 199 (358)
Q Consensus 166 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 199 (358)
|..+++++|.++++++.+.....+++..+|....
T Consensus 235 G~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~ 268 (324)
T COG0111 235 GGVVDEDALLAALDSGKIAGAALDVFEEEPLPAD 268 (324)
T ss_pred cceecHHHHHHHHHcCCcceEEecCCCCCCCCCC
Confidence 9999999999999999888777788877765443
No 21
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.95 E-value=3.1e-28 Score=203.79 Aligned_cols=162 Identities=38% Similarity=0.664 Sum_probs=143.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 149 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~ 149 (358)
+++|||||+|+||..+|++|.+.|++|.+|||++++.+.+.+.|+...+++.|+++++|+|++|+|.+.+++.+++++.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~- 79 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN- 79 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-
Confidence 3689999999999999999999999999999999999999988999999999999999999999999999999995433
Q ss_pred ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEE
Q 018303 150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 229 (358)
Q Consensus 150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~ 229 (358)
+++.+++|+++||+++..|....++.+.+.+.++.|+|+|++++++....+.+.++++|+++.+++++++|+.++.++++
T Consensus 80 i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~ 159 (163)
T PF03446_consen 80 ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYH 159 (163)
T ss_dssp HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEE
T ss_pred HhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCcee
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred -eCC
Q 018303 230 -LGD 232 (358)
Q Consensus 230 -~g~ 232 (358)
+|+
T Consensus 160 ~~G~ 163 (163)
T PF03446_consen 160 YVGP 163 (163)
T ss_dssp E-ES
T ss_pred eeCc
Confidence 464
No 22
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.95 E-value=4.1e-27 Score=219.27 Aligned_cols=270 Identities=16% Similarity=0.178 Sum_probs=213.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------C------CccCCCHHHHhhcCCEEEEeeC
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------G------AKYQPSPDEVAASCDVTFAMLA 135 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------g------~~~~~~~~~~~~~aDivi~~vp 135 (358)
.|+|+|||+|.||+.+|..|...|++|.+|+|++++.+.+... + +...+++.++++++|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 4689999999999999999999999999999998877666543 2 3356688888899999999997
Q ss_pred ChhhHhhhhcccccccccCCCCCEEEEccCC-ChhH--HHHHHHHHHh---cCCeEecCCCCCCCCcCCCCceEEEecCC
Q 018303 136 DPESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDT--SKLINGHIKA---TGASFLEAPVSGSKKPAEDGQLIFLAAGD 209 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~--~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 209 (358)
. ..++.++ +.++++.++|+++++ .+.+ .+.+.+.+.+ .++.+++.|..........+...++.+++
T Consensus 84 ~-~~~~~v~-------~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~ 155 (328)
T PRK14618 84 S-KALRETL-------AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPE 155 (328)
T ss_pred h-HHHHHHH-------HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCC
Confidence 4 4666665 446788899999886 4333 4566666655 56677777766554433445667778889
Q ss_pred HhHHHHHHHHHHHhcCCeEE--------eCC---------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018303 210 KSLYNTVAPLLDIMGKSRFY--------LGD---------VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLV 272 (358)
Q Consensus 210 ~~~~~~v~~ll~~~g~~~~~--------~g~---------~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 272 (358)
++..+.++++|+..+.+++. .+. .|.+...|+..|.....+.+++.|+..++++.|+++++++
T Consensus 156 ~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~ 235 (328)
T PRK14618 156 PGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFY 235 (328)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchh
Confidence 99999999999999988864 332 3666677778888888899999999999999999999999
Q ss_pred HHHhh----ccccchhhhccc--cccccC---C-CCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCC
Q 018303 273 EVVSQ----GAISAPMYSLKG--PSMIES---L-YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGL 342 (358)
Q Consensus 273 ~~~~~----~~~~s~~~~~~~--~~~~~~---~-~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~ 342 (358)
++... +++.|+.++++. +.+.++ + +.++|.+..+.||++.+.+++++.++++|+.+++++++ .
T Consensus 236 ~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~-------~ 308 (328)
T PRK14618 236 GLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA-------R 308 (328)
T ss_pred cCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------h
Confidence 99776 366788888773 467776 3 56678888999999999999999999999999998888 3
Q ss_pred CCccHHHHHHHH
Q 018303 343 SDEDFSAVIEAL 354 (358)
Q Consensus 343 ~~~d~~~~~~~~ 354 (358)
++.+..++++.+
T Consensus 309 ~~~~~~~~~~~~ 320 (328)
T PRK14618 309 GGWDPLAGLRSL 320 (328)
T ss_pred CCCCHHHHHHHH
Confidence 444556665554
No 23
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.95 E-value=7.2e-28 Score=221.72 Aligned_cols=176 Identities=11% Similarity=0.068 Sum_probs=148.7
Q ss_pred eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG 82 (358)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG 82 (358)
+...|+|+.+ ++||++++++|+++|+++.+.+.+++|.|.......+.+. ++.++++||||+|+||
T Consensus 92 V~n~~~~~~~--~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~------------~L~gktvGIiG~G~IG 157 (323)
T PRK15409 92 LMHTPTVLTE--TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGT------------DVHHKTLGIVGMGRIG 157 (323)
T ss_pred EEeCCCCCch--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccC------------CCCCCEEEEEcccHHH
Confidence 4555788887 8999999999999999999999999999974321111122 7889999999999999
Q ss_pred HHHHHHHH-HCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303 83 TPMAQNLL-KAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 161 (358)
Q Consensus 83 ~~~a~~l~-~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi 161 (358)
+.+|++++ .+|++|.+|+++... +.....+... .++++++++||+|++|+|.+++|++++ +++.++.||+|+++|
T Consensus 158 ~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li--~~~~l~~mk~ga~lI 233 (323)
T PRK15409 158 MALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLF--GAEQFAKMKSSAIFI 233 (323)
T ss_pred HHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhcc--CHHHHhcCCCCeEEE
Confidence 99999998 999999999987532 2222334544 489999999999999999999999999 889999999999999
Q ss_pred EccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303 162 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 196 (358)
Q Consensus 162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 196 (358)
|++||..+++++|.++|+++.+.....+++..+|.
T Consensus 234 N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~ 268 (323)
T PRK15409 234 NAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPL 268 (323)
T ss_pred ECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCC
Confidence 99999999999999999999888777778776654
No 24
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.94 E-value=1.4e-27 Score=219.24 Aligned_cols=176 Identities=13% Similarity=0.119 Sum_probs=147.7
Q ss_pred eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG 82 (358)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG 82 (358)
+...|+|+.+ +++|+++++++++.|+++.+.+.+|+|.|.....+... .....++.+++|||||+|+||
T Consensus 89 v~n~~g~~~~--~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~---------~~~~~~L~gktvGIiG~G~IG 157 (311)
T PRK08410 89 VKNVAGYSTE--SVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHI---------SRPLGEIKGKKWGIIGLGTIG 157 (311)
T ss_pred EEcCCCCCCh--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCcccc---------CccccccCCCEEEEECCCHHH
Confidence 4455788887 89999999999999999999999999999754322110 001227889999999999999
Q ss_pred HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303 83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD 162 (358)
Q Consensus 83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~ 162 (358)
+.+|++++.+|++|++|||+.... ..+.. ..++++++++||+|++|+|.+++|++++ +++.++.||+|+++||
T Consensus 158 ~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li--~~~~~~~Mk~~a~lIN 230 (311)
T PRK08410 158 KRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLI--AYKELKLLKDGAILIN 230 (311)
T ss_pred HHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhccc--CHHHHHhCCCCeEEEE
Confidence 999999999999999999964321 12333 3589999999999999999999999999 8999999999999999
Q ss_pred ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcC
Q 018303 163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 197 (358)
Q Consensus 163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 197 (358)
++||..+++++|.++|+++.+. ...+++..+|..
T Consensus 231 ~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~ 264 (311)
T PRK08410 231 VGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPME 264 (311)
T ss_pred CCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCC
Confidence 9999999999999999998888 777887776643
No 25
>PLN03139 formate dehydrogenase; Provisional
Probab=99.94 E-value=4.6e-27 Score=219.52 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=152.1
Q ss_pred eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG 82 (358)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG 82 (358)
+...|+|... +++|++++++|++.|++..+.+.+++|.|...... ..+. ++.+++|||||+|+||
T Consensus 147 V~n~~g~na~--sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~-~~~~------------~L~gktVGIVG~G~IG 211 (386)
T PLN03139 147 VAEVTGSNVV--SVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIA-YRAY------------DLEGKTVGTVGAGRIG 211 (386)
T ss_pred EEECCCcCcH--HHHHHHHHHHHHHHcCcHHHHHHHHhCCCcccccc-CCCc------------CCCCCEEEEEeecHHH
Confidence 4445566666 89999999999999999999999999999743211 1111 7889999999999999
Q ss_pred HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303 83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD 162 (358)
Q Consensus 83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~ 162 (358)
+.+|++++.+|++|.+||++....+...+.|+....++++++++||+|++++|.+++|++++ +++.++.|++|+++||
T Consensus 212 ~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lIN 289 (386)
T PLN03139 212 RLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF--NKERIAKMKKGVLIVN 289 (386)
T ss_pred HHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHh--CHHHHhhCCCCeEEEE
Confidence 99999999999999999998654444444566666799999999999999999999999999 7899999999999999
Q ss_pred ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCC
Q 018303 163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE 198 (358)
Q Consensus 163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 198 (358)
++|+..+++++|.++|+++.+.....+++..+|...
T Consensus 290 ~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~ 325 (386)
T PLN03139 290 NARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPK 325 (386)
T ss_pred CCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCC
Confidence 999999999999999999998888888887766443
No 26
>PRK07574 formate dehydrogenase; Provisional
Probab=99.94 E-value=5.3e-27 Score=219.29 Aligned_cols=176 Identities=13% Similarity=0.076 Sum_probs=148.8
Q ss_pred eeec-cccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303 4 LVKS-SYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG 82 (358)
Q Consensus 4 ~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG 82 (358)
++|. .+... +++|++++++|++.|++..+.+.+++|.|....... .+. ++.+++|||||+|+||
T Consensus 140 V~n~~g~~a~--~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~-~~~------------~L~gktVGIvG~G~IG 204 (385)
T PRK07574 140 VAEVTGSNSI--SVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVS-RSY------------DLEGMTVGIVGAGRIG 204 (385)
T ss_pred EEcCCCCchH--HHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccc-cce------------ecCCCEEEEECCCHHH
Confidence 3444 44444 899999999999999999999999999997542111 111 6888999999999999
Q ss_pred HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303 83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD 162 (358)
Q Consensus 83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~ 162 (358)
+.+|++|+.+|++|.+|||+....+.....++....++++++++||+|++|+|.+++|++++ +++.++.|++|+++||
T Consensus 205 ~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lIN 282 (385)
T PRK07574 205 LAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLF--DADVLSRMKRGSYLVN 282 (385)
T ss_pred HHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHh--CHHHHhcCCCCcEEEE
Confidence 99999999999999999998644333334466666799999999999999999999999999 8899999999999999
Q ss_pred ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303 163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 196 (358)
Q Consensus 163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 196 (358)
++|+..+++++|.++|+++.+.....+|+..+|.
T Consensus 283 ~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPl 316 (385)
T PRK07574 283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPA 316 (385)
T ss_pred CCCCchhhHHHHHHHHHhCCccEEEEecCCCCCC
Confidence 9999999999999999999888777788776654
No 27
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.94 E-value=7.3e-27 Score=215.07 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=147.0
Q ss_pred eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG 82 (358)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG 82 (358)
+...|+|+.. +++|+++++++++.|+++.+.+.+++|.|.....+... .....++.+++|||||+|+||
T Consensus 92 v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~---------~~~~~~l~gktvgIiG~G~IG 160 (317)
T PRK06487 92 VCNCQGYGTP--SVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLL---------DFPIVELEGKTLGLLGHGELG 160 (317)
T ss_pred EEeCCCCCcc--hHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccc---------cCcccccCCCEEEEECCCHHH
Confidence 4455788877 89999999999999999999999999999754322110 001127889999999999999
Q ss_pred HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303 83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD 162 (358)
Q Consensus 83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~ 162 (358)
+.+|++++.+|++|++|+++... . ... ..++++++++||+|++|+|.+++|++++ +++.++.||+|+++||
T Consensus 161 ~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li--~~~~~~~mk~ga~lIN 231 (317)
T PRK06487 161 GAVARLAEAFGMRVLIGQLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTRHLI--GARELALMKPGALLIN 231 (317)
T ss_pred HHHHHHHhhCCCEEEEECCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHhcCc--CHHHHhcCCCCeEEEE
Confidence 99999999999999999986432 1 122 3489999999999999999999999999 8999999999999999
Q ss_pred ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcC
Q 018303 163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 197 (358)
Q Consensus 163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 197 (358)
++||..+++++|.++|+++.+.....+++..+|..
T Consensus 232 ~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~ 266 (317)
T PRK06487 232 TARGGLVDEQALADALRSGHLGGAATDVLSVEPPV 266 (317)
T ss_pred CCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCC
Confidence 99999999999999999998887777887766543
No 28
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.93 E-value=2.5e-25 Score=207.37 Aligned_cols=272 Identities=18% Similarity=0.227 Sum_probs=199.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------------CCccCCCHHHHhhcCCEEEEeeCC
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLAD 136 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivi~~vp~ 136 (358)
|+|+|||+|.||..+|..|+..|++|.+|+|+++..+.+... ++....+++++++++|+|++|+|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~- 80 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP- 80 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC-
Confidence 689999999999999999999999999999998877766654 24456678888899999999997
Q ss_pred hhhHhhhhcccccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhc-----CCeEecCCCCCCCCcCCCCceEEEecCCH
Q 018303 137 PESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKAT-----GASFLEAPVSGSKKPAEDGQLIFLAAGDK 210 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 210 (358)
+.+++.++ +++.+.+++++++|+++++ .+.....+.+.+.+. ...++..|..............++.+++.
T Consensus 81 ~~~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 81 SQALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred HHHHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 57888888 7777778899999999744 333333334444332 33455566554332233344555666788
Q ss_pred hHHHHHHHHHHHhcCCeEEeCCc-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018303 211 SLYNTVAPLLDIMGKSRFYLGDV-----------------GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVE 273 (358)
Q Consensus 211 ~~~~~v~~ll~~~g~~~~~~g~~-----------------g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~ 273 (358)
+.++.+.++|+..+..+....+. |.+...|+..|.+...+..+++|+..++++.|++++.+.+
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~ 237 (325)
T PRK00094 158 ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLG 237 (325)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhc
Confidence 99999999999999887766553 3444467777888888999999999999999999999988
Q ss_pred HHhhc----cccchhhhccc--cccccCC-C-----CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303 274 VVSQG----AISAPMYSLKG--PSMIESL-Y-----PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 341 (358)
Q Consensus 274 ~~~~~----~~~s~~~~~~~--~~~~~~~-~-----~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g 341 (358)
....+ ...++..+++. ..+..+. + .++ .+..+.||++.+.++++++|+++|+.+++++++
T Consensus 238 ~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~------- 309 (325)
T PRK00094 238 LAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL------- 309 (325)
T ss_pred ccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------
Confidence 75543 23344444433 2232222 1 112 456779999999999999999999999999887
Q ss_pred CCCccHHHHHHHH
Q 018303 342 LSDEDFSAVIEAL 354 (358)
Q Consensus 342 ~~~~d~~~~~~~~ 354 (358)
.++.+...+++.+
T Consensus 310 ~~~~~~~~~~~~~ 322 (325)
T PRK00094 310 YEGKDPREAVEDL 322 (325)
T ss_pred cCCCCHHHHHHHH
Confidence 4456666666554
No 29
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.93 E-value=1.8e-24 Score=206.46 Aligned_cols=255 Identities=14% Similarity=0.122 Sum_probs=194.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc----------------cCCCHHHHhhcCCEEEE
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK----------------YQPSPDEVAASCDVTFA 132 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~----------------~~~~~~~~~~~aDivi~ 132 (358)
..|+|||||+|.||..+|..|++ |++|++||+++++.+.+. .|.. ..++..+.+++||++++
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 34799999999999999999887 699999999999988877 3322 22343456889999999
Q ss_pred eeCCh------hhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc--CCeEec------CC--CCCCCCc
Q 018303 133 MLADP------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLE------AP--VSGSKKP 196 (358)
Q Consensus 133 ~vp~~------~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~------~~--~~~~~~~ 196 (358)
|||.+ .++..+....+.+.+.+++|+++|+.|+..|...+.+....... |..+.+ +| +.++...
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~ 162 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKK 162 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccc
Confidence 99977 34455654346788889999999999999999888664443332 444333 23 2233222
Q ss_pred CCCC-ceEEEecCCHhHHHHHHHHHHHhc-CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018303 197 AEDG-QLIFLAAGDKSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEV 274 (358)
Q Consensus 197 ~~~~-~~~~~~~g~~~~~~~v~~ll~~~g-~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~ 274 (358)
.... ...++.|++++..+.+.++++.+. ...+.+++++.++..|+++|.+.+..+++++|+..+|++.|+|.+++.+.
T Consensus 163 ~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a 242 (425)
T PRK15182 163 HRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRA 242 (425)
T ss_pred ccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 2222 233555667888889999999886 45788899999999999999999999999999999999999999999998
Q ss_pred HhhccccchhhhccccccccCCCCCC-CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303 275 VSQGAISAPMYSLKGPSMIESLYPTA-FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK 338 (358)
Q Consensus 275 ~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~ 338 (358)
+... |. +. .+.|| +....+.||...+...+++.|..++++++++++.+...
T Consensus 243 ~~~~----~~-------~~--~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~~ 294 (425)
T PRK15182 243 AGSK----WN-------FL--PFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNMG 294 (425)
T ss_pred hcCC----CC-------cc--cCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 5432 21 11 13445 55567899999999999999999999999988766543
No 30
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.93 E-value=1.1e-26 Score=213.49 Aligned_cols=175 Identities=13% Similarity=0.096 Sum_probs=146.4
Q ss_pred eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG 82 (358)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG 82 (358)
+...|+|+.. +++|+++++++++.|+++.+.+.++++.|.....+... ..+..++.+++|||||+|+||
T Consensus 91 v~n~~g~~~~--~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~---------~~~~~~l~gktvgIiG~G~IG 159 (314)
T PRK06932 91 VKNVTGYSST--TVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYF---------DYPITDVRGSTLGVFGKGCLG 159 (314)
T ss_pred EEeCCCCChh--HHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCcccccc---------CCcccccCCCEEEEECCCHHH
Confidence 4455788887 89999999999999999999999999999754321110 011227889999999999999
Q ss_pred HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303 83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD 162 (358)
Q Consensus 83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~ 162 (358)
+.+|++++.+|++|++|+++... .. .. ...++++++++||+|++|+|.+++|++++ +++.++.||+|+++||
T Consensus 160 ~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li--~~~~l~~mk~ga~lIN 231 (314)
T PRK06932 160 TEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLI--NAETLALMKPTAFLIN 231 (314)
T ss_pred HHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhccc--CHHHHHhCCCCeEEEE
Confidence 99999999999999999986421 11 11 13589999999999999999999999999 8999999999999999
Q ss_pred ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303 163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 196 (358)
Q Consensus 163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 196 (358)
++||..+++++|.++|+++.+.....+++..+|.
T Consensus 232 ~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 232 TGRGPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred CCCccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 9999999999999999999888777788877654
No 31
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.93 E-value=7.6e-24 Score=202.22 Aligned_cols=252 Identities=14% Similarity=0.098 Sum_probs=191.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-CCCHHHH---------------hhcCCEEEEe
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QPSPDEV---------------AASCDVTFAM 133 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-~~~~~~~---------------~~~aDivi~~ 133 (358)
.++|+|||+|.||..+|..|+..|++|++||+++++.+.+....... ..+++++ .++||+|++|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 36899999999999999999999999999999998888754322211 1123333 2379999999
Q ss_pred eCCh---------hhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCC--------------eEecCC-
Q 018303 134 LADP---------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA--------------SFLEAP- 189 (358)
Q Consensus 134 vp~~---------~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~--------------~~~~~~- 189 (358)
+|.+ ..+...+ ..+.+.+++|++||+.|+..+...+.+...+.+.+. .++.+|
T Consensus 83 vptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE 159 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPE 159 (415)
T ss_pred cCCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCC
Confidence 9976 4666666 778888999999999999999999888887766432 245566
Q ss_pred -CCCCCCcCCCCceEEEecC-CHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018303 190 -VSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD 267 (358)
Q Consensus 190 -~~~~~~~~~~~~~~~~~~g-~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~ 267 (358)
+..+........+..+++| +++..+++.++++.++..++++++++.++..|++.|.+.+..+++++|+..+|++.|+|
T Consensus 160 ~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD 239 (415)
T PRK11064 160 RVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGIN 239 (415)
T ss_pred ccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2233323233334456677 89999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303 268 PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK 338 (358)
Q Consensus 268 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~ 338 (358)
++++.+.+...... . ++ ...+|+....+.||...+. .+.+...+++++++++.+...
T Consensus 240 ~~~v~~~~~~~~ri----~-----~l--~pG~G~GG~ClpkD~~~L~---~~~~~~~~l~~~a~~~N~~~~ 296 (415)
T PRK11064 240 VWELIRLANRHPRV----N-----IL--QPGPGVGGHCIAVDPWFIV---AQNPQQARLIRTAREVNDGKP 296 (415)
T ss_pred HHHHHHHhccCCCc----c-----cC--CCCCCCCCccccccHHHHH---HhcCCccHHHHHHHHHHHHhH
Confidence 99999988754211 0 11 1123444567888887664 356667888888877665553
No 32
>PLN02306 hydroxypyruvate reductase
Probab=99.93 E-value=2.9e-26 Score=214.98 Aligned_cols=177 Identities=12% Similarity=0.022 Sum_probs=146.7
Q ss_pred eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG 82 (358)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG 82 (358)
+...|+|... +++|++++++|++.|+++.+.+.+++|.|..+......+. ++.+++|||||+|+||
T Consensus 112 V~n~pg~~~~--~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~------------~L~gktvGIiG~G~IG 177 (386)
T PLN02306 112 VGNTPGVLTE--TTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGN------------LLKGQTVGVIGAGRIG 177 (386)
T ss_pred EEECCCcCHH--HHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCc------------CCCCCEEEEECCCHHH
Confidence 4556788777 8999999999999999999999999999964332111112 6888999999999999
Q ss_pred HHHHHHHH-HCCCcEEEEcCCccch-hhH-HhCC------------CccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303 83 TPMAQNLL-KAGCDVTVWNRTKSKC-DPL-ISLG------------AKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 147 (358)
Q Consensus 83 ~~~a~~l~-~~g~~V~~~~~~~~~~-~~~-~~~g------------~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~ 147 (358)
+.+|+++. .+|++|++||++.+.. ... ...+ .....++++++++||+|++|+|.+++|++++ +
T Consensus 178 ~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~li--n 255 (386)
T PLN02306 178 SAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLI--N 255 (386)
T ss_pred HHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhc--C
Confidence 99999985 8999999999976421 110 0111 1224589999999999999999999999999 8
Q ss_pred ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303 148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 195 (358)
Q Consensus 148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 195 (358)
++.++.||+|+++||++||..+++++|.++|+++.+.....+++..+|
T Consensus 256 ~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP 303 (386)
T PLN02306 256 KERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEP 303 (386)
T ss_pred HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCC
Confidence 999999999999999999999999999999999888877788887775
No 33
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.93 E-value=3.1e-26 Score=212.30 Aligned_cols=180 Identities=13% Similarity=0.063 Sum_probs=148.5
Q ss_pred eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG 82 (358)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG 82 (358)
+..+|+|+.. +++|++++++|++.|+++.+.+.+++|.|......... . .....++.+++|||||+|+||
T Consensus 93 v~n~~g~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~-~-------~~~g~~L~gktvgIiG~G~IG 162 (333)
T PRK13243 93 VTNTPGVLTE--ATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHP-L-------MFLGYDVYGKTIGIIGFGRIG 162 (333)
T ss_pred EEECCCCChH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcccccccc-c-------cccccCCCCCEEEEECcCHHH
Confidence 4455788777 89999999999999999999999999999743110000 0 001127889999999999999
Q ss_pred HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303 83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD 162 (358)
Q Consensus 83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~ 162 (358)
+.+|++++.+|++|.+|||+++.. .....+... .++++++++||+|++|+|.+++|++++ +++.++.|++|+++||
T Consensus 163 ~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i--~~~~~~~mk~ga~lIN 238 (333)
T PRK13243 163 QAVARRAKGFGMRILYYSRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKETYHMI--NEERLKLMKPTAILVN 238 (333)
T ss_pred HHHHHHHHHCCCEEEEECCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhcc--CHHHHhcCCCCeEEEE
Confidence 999999999999999999986542 222334443 589999999999999999999999999 7889999999999999
Q ss_pred ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303 163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 196 (358)
Q Consensus 163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 196 (358)
++|+..+++++|.++++++.+.....+++..+|.
T Consensus 239 ~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~ 272 (333)
T PRK13243 239 TARGKVVDTKALVKALKEGWIAGAGLDVFEEEPY 272 (333)
T ss_pred CcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCC
Confidence 9999999999999999999888877788877654
No 34
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.93 E-value=6.3e-24 Score=195.94 Aligned_cols=265 Identities=13% Similarity=0.134 Sum_probs=202.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhH-----------HhCC-------------CccCCCHHHHhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAAS 126 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~ 126 (358)
++|+|||+|.||..+|..|+..|++|++||++++..+.. .+.| +....++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 589999999999999999999999999999998765542 2233 2466788889999
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEe
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA 206 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (358)
||+|++++|...+.+..++ .++.... ++.+++. ++........+.+.+...+..+.++|+.+... .+++.++
T Consensus 83 ad~Vi~avpe~~~~k~~~~--~~l~~~~-~~~~ii~-ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~----~~lveiv 154 (308)
T PRK06129 83 ADYVQESAPENLELKRALF--AELDALA-PPHAILA-SSTSALLASAFTEHLAGRERCLVAHPINPPYL----IPVVEVV 154 (308)
T ss_pred CCEEEECCcCCHHHHHHHH--HHHHHhC-CCcceEE-EeCCCCCHHHHHHhcCCcccEEEEecCCCccc----CceEEEe
Confidence 9999999998776666663 3343334 4444444 44444456678888766677788888864211 1345566
Q ss_pred c---CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018303 207 A---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP 283 (358)
Q Consensus 207 ~---g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~ 283 (358)
+ ++++.++.+.++++.+|+++++++..+.+. ++++. ..++++|++.++++.|++++++++++..+.+.+|
T Consensus 155 ~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~ 227 (308)
T PRK06129 155 PAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLGLRW 227 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCc
Confidence 5 689999999999999999999998755453 33443 3467889999999999999999999999888887
Q ss_pred hhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHH
Q 018303 284 MYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIE 352 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~ 352 (358)
.+ .+|.+..+.+.++|....+.||..++.+.+++.+.+.|+++...+.+....+.-.+..++..+.+
T Consensus 228 ~~--~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (308)
T PRK06129 228 SF--MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQA 294 (308)
T ss_pred cC--cCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 77 57878877777888889999999999999999999999887776655555555555555555443
No 35
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=99.93 E-value=2.7e-26 Score=202.35 Aligned_cols=175 Identities=13% Similarity=0.117 Sum_probs=154.2
Q ss_pred eeeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChh
Q 018303 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIM 81 (358)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~i 81 (358)
+++..|.|++. |++|++.++++++.|+++.....+|+|.|.+....+. ++.+|++||+|+|+|
T Consensus 95 ~Vvn~P~~Ns~--saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~---------------el~GKTLgvlG~GrI 157 (406)
T KOG0068|consen 95 LVVNTPTANSR--SAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGW---------------ELRGKTLGVLGLGRI 157 (406)
T ss_pred EEEeCCCCChH--HHHHHHHHHHHHHhhhcchhheeeecCceeecceeee---------------EEeccEEEEeecccc
Confidence 46678999999 9999999999999999999999999999987653322 788999999999999
Q ss_pred HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303 82 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 161 (358)
Q Consensus 82 G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi 161 (358)
|+.+|+++..+|+.|+.||+-.. .+.....|+... +++|++..||+|.+|+|.+++|++++ +++.++.||+|..+|
T Consensus 158 GseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~li--n~~tfA~mKkGVriI 233 (406)
T KOG0068|consen 158 GSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLL--NDETFAKMKKGVRII 233 (406)
T ss_pred hHHHHHHHHhcCceEEeecCCCc-hHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhcc--CHHHHHHhhCCcEEE
Confidence 99999999999999999997543 244555677765 89999999999999999999999999 889999999999999
Q ss_pred EccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcC
Q 018303 162 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 197 (358)
Q Consensus 162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 197 (358)
|++||..+|+.+|.+++.++.+.....+++..++..
T Consensus 234 N~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~ 269 (406)
T KOG0068|consen 234 NVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPK 269 (406)
T ss_pred EecCCceechHHHHHHHhcCcccceeeecccCCCCc
Confidence 999999999999999999987776666777766654
No 36
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.93 E-value=5.5e-26 Score=207.03 Aligned_cols=166 Identities=13% Similarity=0.143 Sum_probs=141.9
Q ss_pred eeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHH
Q 018303 4 LVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGT 83 (358)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~ 83 (358)
++|+.+.. .+++|++++++|++.|+++.+.+.+++|.|..... + ++.+++|||||+|+||+
T Consensus 75 ~~~~g~~~--~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~-----~------------~L~gktvgIiG~G~IG~ 135 (303)
T PRK06436 75 CSNAGAYS--ISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPT-----K------------LLYNKSLGILGYGGIGR 135 (303)
T ss_pred EEcCCCCc--HHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCC-----C------------CCCCCEEEEECcCHHHH
Confidence 44553333 49999999999999999999999999999975321 1 67889999999999999
Q ss_pred HHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-cCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303 84 PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD 162 (358)
Q Consensus 84 ~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~ 162 (358)
.+|++++.+|++|++|||+... .+.. ...++++++++||+|++|+|.+++|++++ +++.++.|++|+++||
T Consensus 136 ~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li--~~~~l~~mk~ga~lIN 207 (303)
T PRK06436 136 RVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMI--NSKMLSLFRKGLAIIN 207 (303)
T ss_pred HHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCc--CHHHHhcCCCCeEEEE
Confidence 9999999999999999997532 1222 24689999999999999999999999999 7889999999999999
Q ss_pred ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303 163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 196 (358)
Q Consensus 163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 196 (358)
++|+.++++++|.++++++.+.....+++..+|.
T Consensus 208 ~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~ 241 (303)
T PRK06436 208 VARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPI 241 (303)
T ss_pred CCCccccCHHHHHHHHHcCCceEEEEccCCCCCC
Confidence 9999999999999999998787777777776653
No 37
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.93 E-value=1.2e-26 Score=196.95 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=130.6
Q ss_pred CccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEc
Q 018303 21 MSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWN 100 (358)
Q Consensus 21 ~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~ 100 (358)
++++|++.|+++.+.+.++++.|.... ... ..++.+++|||||+|+||+.+|++++.+|++|++||
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~--~~~------------~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d 66 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRE--RFP------------GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYD 66 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHT--TTT------------BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCc--CCC------------ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEec
Confidence 356777899999999999999991111 111 117888999999999999999999999999999999
Q ss_pred CCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHh
Q 018303 101 RTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA 180 (358)
Q Consensus 101 ~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~ 180 (358)
|+..........+. ...+++|++++||+|++++|.+++|++++ +++.++.|++|+++||++|+..+++++|.+++++
T Consensus 67 ~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li--~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 67 RSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLI--NAEFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp SSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSB--SHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred ccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceee--eeeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 98876543444455 34599999999999999999999999999 8999999999999999999999999999999999
Q ss_pred cCCeEecCCCCCCCCcC
Q 018303 181 TGASFLEAPVSGSKKPA 197 (358)
Q Consensus 181 ~~~~~~~~~~~~~~~~~ 197 (358)
+.+.....+++..++..
T Consensus 144 g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 144 GKIAGAALDVFEPEPLP 160 (178)
T ss_dssp TSEEEEEESS-SSSSSS
T ss_pred ccCceEEEECCCCCCCC
Confidence 98887777887776544
No 38
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.93 E-value=4.8e-26 Score=216.16 Aligned_cols=171 Identities=13% Similarity=0.071 Sum_probs=147.1
Q ss_pred eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG 82 (358)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG 82 (358)
+...|+|+.. +++|+++++++++.|+++.+.+.+++|.|..... .+. ++.+++|||||+|+||
T Consensus 101 V~n~pg~~~~--aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~---~~~------------~L~gktvGIiG~G~IG 163 (409)
T PRK11790 101 VFNAPFSNTR--SVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAA---GSF------------EVRGKTLGIVGYGHIG 163 (409)
T ss_pred EEeCCCCChH--HHHHHHHHHHHHHHcChHHHHHHHHcCccccccc---Ccc------------cCCCCEEEEECCCHHH
Confidence 3445788887 8999999999999999999999999999975321 111 7888999999999999
Q ss_pred HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303 83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD 162 (358)
Q Consensus 83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~ 162 (358)
+.+|+++..+|++|.+||+++... ..++....++++++++||+|++|+|.+++|++++ +++.+..||+|+++||
T Consensus 164 ~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li--~~~~l~~mk~ga~lIN 237 (409)
T PRK11790 164 TQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMI--GAEELALMKPGAILIN 237 (409)
T ss_pred HHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhcc--CHHHHhcCCCCeEEEE
Confidence 999999999999999999864321 1234455689999999999999999999999999 8899999999999999
Q ss_pred ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303 163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 196 (358)
Q Consensus 163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 196 (358)
++||..+++++|.++|+++.+.....+++..+|.
T Consensus 238 ~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~ 271 (409)
T PRK11790 238 ASRGTVVDIDALADALKSGHLAGAAIDVFPVEPK 271 (409)
T ss_pred CCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence 9999999999999999999888777787766653
No 39
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.92 E-value=2.4e-23 Score=196.42 Aligned_cols=249 Identities=16% Similarity=0.122 Sum_probs=188.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh----------------CCCcc--CCCHHHHhhcCCEEEE
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----------------LGAKY--QPSPDEVAASCDVTFA 132 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~----------------~g~~~--~~~~~~~~~~aDivi~ 132 (358)
|+|+|||+|.||..+|..++. |++|++||+++++.+.+.+ .+... ..+..+++++||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 589999999999999987775 9999999999998877654 22222 3346778899999999
Q ss_pred eeCCh----------hhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc---CCC
Q 018303 133 MLADP----------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP---AED 199 (358)
Q Consensus 133 ~vp~~----------~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~~ 199 (358)
|+|.+ ..++.++ +++.. +++|+++|+.|+.+|...+.+.+.+.+.++.+ .|.+-.+-. ...
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~--~PE~l~~G~a~~d~~ 153 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF--SPEFLREGKALYDNL 153 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE--CcccccCCccccccc
Confidence 99976 4556666 56665 68999999999999999999998887655444 444322211 111
Q ss_pred CceEEEecCCHhHHHHHHHHHHH--hcCCeE-EeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303 200 GQLIFLAAGDKSLYNTVAPLLDI--MGKSRF-YLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 276 (358)
Q Consensus 200 ~~~~~~~~g~~~~~~~v~~ll~~--~g~~~~-~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 276 (358)
.+..++.|++++..+++.+++.. ++..+. ++++++.++..|++.|.+.+..++.++|+..+|++.|+|.+++.+.+.
T Consensus 154 ~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~ 233 (388)
T PRK15057 154 HPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVC 233 (388)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence 23367778877778888888854 555444 689999999999999999999999999999999999999999999887
Q ss_pred hccccchhhhccccccccCCCCC--CCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303 277 QGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS 339 (358)
Q Consensus 277 ~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~ 339 (358)
... ++...-+.| |+....+.||...+...+ .+++++++++++++.+...+
T Consensus 234 ~d~-----------ri~~~~l~pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~~~~ 285 (388)
T PRK15057 234 LDP-----------RIGNHYNNPSFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRTRKD 285 (388)
T ss_pred CCC-----------CCCCccCCCCCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHHhHH
Confidence 643 222211123 455677899998886555 56788999998877665544
No 40
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.92 E-value=5.5e-24 Score=196.33 Aligned_cols=254 Identities=19% Similarity=0.237 Sum_probs=184.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 149 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~ 149 (358)
+|+|+|||+|+||+.+|+.|...|++|.+|+|+.. .++.++++++|+|++++|. ..++.++ ++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~---~~ 66 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA---EQ 66 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH---HH
Confidence 47899999999999999999999999999999753 4678889999999999985 6888888 66
Q ss_pred ccc-cCCCCCEEEEccCC-ChhHHHHHHHHHHhcCCeEecCCCC--CCCCc-----CCCCceEEEecCCHhHHHHHHHHH
Q 018303 150 AAS-GMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPVS--GSKKP-----AEDGQLIFLAAGDKSLYNTVAPLL 220 (358)
Q Consensus 150 ~~~-~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~g~~~~~~~v~~ll 220 (358)
+.. .+++++++|+++++ .+.....+.+.+... +.+.|+. .++.. .......++++++++..+.++++|
T Consensus 67 l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~---~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll 143 (308)
T PRK14619 67 VQALNLPPETIIVTATKGLDPETTRTPSQIWQAA---FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIF 143 (308)
T ss_pred HHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHH---cCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHh
Confidence 654 37889999998874 333333333333221 2233332 22211 122456677888999999999999
Q ss_pred HHhcCCeEEeCC-cC--hHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018303 221 DIMGKSRFYLGD-VG--NGAAM--------------KLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP 283 (358)
Q Consensus 221 ~~~g~~~~~~g~-~g--~~~~~--------------k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~ 283 (358)
+..+.+++..++ .| .+..+ ++..|.....+..++.|+..++++.|++++.++++. +.+-++
T Consensus 144 ~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~--g~gd~~ 221 (308)
T PRK14619 144 SSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLS--GLGDLL 221 (308)
T ss_pred CCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccccccc--chhhhh
Confidence 999988887766 22 22233 366788888899999999999999999999998752 323322
Q ss_pred hhhccccccccCCCCCCCchhhH----------------HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccH
Q 018303 284 MYSLKGPSMIESLYPTAFPLKHQ----------------QKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDF 347 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~ 347 (358)
. ..+.+..+++.+|+.+..+ .||++.+.++++++|+++|+.+++++++. ++.+.
T Consensus 222 ~---t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~-------~~~~~ 291 (308)
T PRK14619 222 A---TCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQ-------GEITP 291 (308)
T ss_pred e---eecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHc-------CCCCH
Confidence 2 2234455555555544444 89999999999999999999999998883 44455
Q ss_pred HHHHHHHH
Q 018303 348 SAVIEALK 355 (358)
Q Consensus 348 ~~~~~~~~ 355 (358)
..+++.+-
T Consensus 292 ~~~~~~l~ 299 (308)
T PRK14619 292 QQALEELM 299 (308)
T ss_pred HHHHHHHH
Confidence 55555543
No 41
>PLN02928 oxidoreductase family protein
Probab=99.92 E-value=1.6e-25 Score=208.34 Aligned_cols=174 Identities=13% Similarity=0.021 Sum_probs=144.8
Q ss_pred eeeeccccc-cccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChh
Q 018303 3 LLVKSSYSH-RFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIM 81 (358)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~i 81 (358)
+...|+|++ ...+++|+++++++++.|+++.+.+.++++.|.... +. ++.+++|||||+|+|
T Consensus 108 v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~-----~~------------~l~gktvGIiG~G~I 170 (347)
T PLN02928 108 VARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPI-----GD------------TLFGKTVFILGYGAI 170 (347)
T ss_pred EEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccccc-----cc------------CCCCCEEEEECCCHH
Confidence 334456653 446899999999999999999999999999996411 11 678899999999999
Q ss_pred HHHHHHHHHHCCCcEEEEcCCccchhhH------------HhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303 82 GTPMAQNLLKAGCDVTVWNRTKSKCDPL------------ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 149 (358)
Q Consensus 82 G~~~a~~l~~~g~~V~~~~~~~~~~~~~------------~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~ 149 (358)
|+.+|++++.+|++|++|||+....... ..... ...++++++++||+|++|+|.+++|++++ +++
T Consensus 171 G~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li--~~~ 247 (347)
T PLN02928 171 GIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIV--NDE 247 (347)
T ss_pred HHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhccc--CHH
Confidence 9999999999999999999974321111 00112 34689999999999999999999999999 899
Q ss_pred ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303 150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 196 (358)
Q Consensus 150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 196 (358)
.++.|++|++|||++||..+++++|.++|+++.+.....+++..+|.
T Consensus 248 ~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~ 294 (347)
T PLN02928 248 FLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPF 294 (347)
T ss_pred HHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCC
Confidence 99999999999999999999999999999999888777788776654
No 42
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.92 E-value=2.1e-25 Score=204.45 Aligned_cols=162 Identities=13% Similarity=0.151 Sum_probs=139.1
Q ss_pred cCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCC
Q 018303 14 LSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAG 93 (358)
Q Consensus 14 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g 93 (358)
.+++|+++++++++.|+++.+.+.++++.|...... ++.+++|||||+|+||+.+|+++..+|
T Consensus 97 ~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~-----------------~l~g~tvgIvG~G~IG~~vA~~l~afG 159 (312)
T PRK15469 97 EQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEY-----------------HREDFTIGILGAGVLGSKVAQSLQTWG 159 (312)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCC-----------------CcCCCEEEEECCCHHHHHHHHHHHHCC
Confidence 488999999999999999999999999999743211 566789999999999999999999999
Q ss_pred CcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHH
Q 018303 94 CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKL 173 (358)
Q Consensus 94 ~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~ 173 (358)
++|.+|+++++....... .....++++++++||+|++++|.+++|++++ +++.+..|++|+++||++||..+++++
T Consensus 160 ~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~a 235 (312)
T PRK15469 160 FPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGII--NQQLLEQLPDGAYLLNLARGVHVVEDD 235 (312)
T ss_pred CEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHh--HHHHHhcCCCCcEEEECCCccccCHHH
Confidence 999999987654321111 1224589999999999999999999999999 788999999999999999999999999
Q ss_pred HHHHHHhcCCeEecCCCCCCCCc
Q 018303 174 INGHIKATGASFLEAPVSGSKKP 196 (358)
Q Consensus 174 l~~~l~~~~~~~~~~~~~~~~~~ 196 (358)
|.++|+++.+.....+++..+|.
T Consensus 236 L~~aL~~g~i~gaalDVf~~EPl 258 (312)
T PRK15469 236 LLAALDSGKVKGAMLDVFSREPL 258 (312)
T ss_pred HHHHHhcCCeeeEEecCCCCCCC
Confidence 99999999888777788776654
No 43
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.92 E-value=1.8e-25 Score=206.64 Aligned_cols=172 Identities=12% Similarity=0.104 Sum_probs=147.1
Q ss_pred eeeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChh
Q 018303 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIM 81 (358)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~i 81 (358)
++..+|+|+++ +++|+++++++++.|+++.+.+.+++|.|.+... ..++ ++.+++|||||+|+|
T Consensus 94 ~v~n~~~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~--~~~~------------~l~g~~VgIIG~G~I 157 (330)
T PRK12480 94 VISNVPSYSPE--TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE--IMSK------------PVKNMTVAIIGTGRI 157 (330)
T ss_pred EEEeCCCCChH--HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccc--cCcc------------ccCCCEEEEECCCHH
Confidence 35556899998 8999999999999999999999999997743221 1112 678899999999999
Q ss_pred HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303 82 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 161 (358)
Q Consensus 82 G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi 161 (358)
|+.+|++++.+|++|.+||++++..... .....++++++++||+|++|+|.++++.+++ +++.++.|++|+++|
T Consensus 158 G~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li--~~~~l~~mk~gavlI 231 (330)
T PRK12480 158 GAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLF--DKAMFDHVKKGAILV 231 (330)
T ss_pred HHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHH--hHHHHhcCCCCcEEE
Confidence 9999999999999999999987543221 2345689999999999999999999999999 788999999999999
Q ss_pred EccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303 162 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 195 (358)
Q Consensus 162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 195 (358)
|++||..+++++|.++|+++.+.....+++..+|
T Consensus 232 N~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP 265 (330)
T PRK12480 232 NAARGAVINTPDLIAAVNDGTLLGAAIDTYENEA 265 (330)
T ss_pred EcCCccccCHHHHHHHHHcCCeeEEEEeccCCCC
Confidence 9999999999999999999988888888887765
No 44
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.92 E-value=3.3e-25 Score=217.28 Aligned_cols=174 Identities=13% Similarity=0.100 Sum_probs=148.6
Q ss_pred eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG 82 (358)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG 82 (358)
+...|+|... +++|++++++|++.|+++.+.+.+++|.|..... .+. ++.+++|||||+|+||
T Consensus 88 V~n~pg~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~---~g~------------~l~gktvgIiG~G~IG 150 (525)
T TIGR01327 88 VVNAPTGNTI--SAAEHALAMLLAAARNIPQADASLKEGEWDRKAF---MGT------------ELYGKTLGVIGLGRIG 150 (525)
T ss_pred EEeCCCcChH--HHHHHHHHHHHHHhcCHHHHHHHHHcCCcccccc---Ccc------------ccCCCEEEEECCCHHH
Confidence 3344677777 8999999999999999999999999999975321 111 6888999999999999
Q ss_pred HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEE
Q 018303 83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD 162 (358)
Q Consensus 83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~ 162 (358)
+.+|++++.+|++|.+||++... +...+.++...+++++++++||+|++|+|.+++|++++ +++.++.|++|+++||
T Consensus 151 ~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lIN 227 (525)
T TIGR01327 151 SIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLI--GAEELAKMKKGVIIVN 227 (525)
T ss_pred HHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc--CHHHHhcCCCCeEEEE
Confidence 99999999999999999986332 33344566656789999999999999999999999999 7889999999999999
Q ss_pred ccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303 163 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 196 (358)
Q Consensus 163 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 196 (358)
++|+..+++++|.++|+++.+.....+++..+|.
T Consensus 228 ~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~ 261 (525)
T TIGR01327 228 CARGGIIDEAALYEALEEGHVRAAALDVFEKEPP 261 (525)
T ss_pred cCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC
Confidence 9999999999999999999888777777766653
No 45
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.91 E-value=9.7e-25 Score=213.99 Aligned_cols=172 Identities=14% Similarity=0.151 Sum_probs=147.2
Q ss_pred eeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHH
Q 018303 4 LVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGT 83 (358)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~ 83 (358)
...|+|+.. +++|++++++|++.|+++.+.+.+++|.|..... .+. ++.+++|||||+|+||+
T Consensus 91 ~n~p~~~~~--~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~---~g~------------~l~gktvgIiG~G~IG~ 153 (526)
T PRK13581 91 VNAPTGNTI--SAAEHTIALMLALARNIPQAHASLKAGKWERKKF---MGV------------ELYGKTLGIIGLGRIGS 153 (526)
T ss_pred EeCCCCChH--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCc---ccc------------ccCCCEEEEECCCHHHH
Confidence 344677776 8999999999999999999999999999975321 112 67889999999999999
Q ss_pred HHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEc
Q 018303 84 PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDV 163 (358)
Q Consensus 84 ~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~ 163 (358)
.+|++++.+|++|.+||++... +.....++... ++++++++||+|++|+|.+++|++++ +++.++.||+|+++||+
T Consensus 154 ~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li--~~~~l~~mk~ga~lIN~ 229 (526)
T PRK13581 154 EVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLI--GAEELAKMKPGVRIINC 229 (526)
T ss_pred HHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCc--CHHHHhcCCCCeEEEEC
Confidence 9999999999999999996532 33344566655 89999999999999999999999999 78899999999999999
Q ss_pred cCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303 164 STVDGDTSKLINGHIKATGASFLEAPVSGSKKP 196 (358)
Q Consensus 164 s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 196 (358)
+|+..+++++|.++|+++.+.....+++..+|.
T Consensus 230 aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~ 262 (526)
T PRK13581 230 ARGGIIDEAALAEALKSGKVAGAALDVFEKEPP 262 (526)
T ss_pred CCCceeCHHHHHHHHhcCCeeEEEEecCCCCCC
Confidence 999999999999999999887777777766653
No 46
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=99.90 E-value=7.6e-24 Score=191.44 Aligned_cols=165 Identities=16% Similarity=0.110 Sum_probs=144.6
Q ss_pred CCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCCC
Q 018303 15 SSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGC 94 (358)
Q Consensus 15 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g~ 94 (358)
++|++++++++.+.|++...++.+++|+|.......+. . .+.++||||+|+|+||+.+|++|..||+
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g-~------------~~~gK~vgilG~G~IG~~ia~rL~~Fg~ 186 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLG-Y------------DLEGKTVGILGLGRIGKAIAKRLKPFGC 186 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCcccc-c------------cccCCEEEEecCcHHHHHHHHhhhhccc
Confidence 88999999999999999999999999999433323222 2 6888999999999999999999999998
Q ss_pred cEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHH
Q 018303 95 DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLI 174 (358)
Q Consensus 95 ~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l 174 (358)
.+..+.|++...+...+.+.. ..+.++++.++|+|++|+|++++|++++ +++++.+|++|.++||++||...+++++
T Consensus 187 ~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~li--Nk~~~~~mk~g~vlVN~aRG~iide~~l 263 (336)
T KOG0069|consen 187 VILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLI--NKKFIEKMKDGAVLVNTARGAIIDEEAL 263 (336)
T ss_pred eeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHh--hHHHHHhcCCCeEEEeccccccccHHHH
Confidence 888888987766655554444 4589999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHhcCCeEecCCCCCCCC
Q 018303 175 NGHIKATGASFLEAPVSGSKK 195 (358)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~~ 195 (358)
.++++++.+.-.+.+++..+|
T Consensus 264 ~eaL~sG~i~~aGlDVf~~EP 284 (336)
T KOG0069|consen 264 VEALKSGKIAGAGLDVFEPEP 284 (336)
T ss_pred HHHHhcCCcccccccccCCCC
Confidence 999999988777778887766
No 47
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.90 E-value=5.2e-24 Score=197.57 Aligned_cols=173 Identities=10% Similarity=0.084 Sum_probs=144.9
Q ss_pred eeeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChh
Q 018303 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIM 81 (358)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~i 81 (358)
++...|+|+.. +++|+++++++++.|+++.+.+.++++.|.+... +.++ ++.+++|||||+|+|
T Consensus 94 ~v~n~~~~~~~--~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~--~~~~------------~l~g~~VgIIG~G~I 157 (332)
T PRK08605 94 IISNVPSYSPE--SIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPP--ILSR------------SIKDLKVAVIGTGRI 157 (332)
T ss_pred EEEeCCCCChH--HHHHHHHHHHHHHhcChHHHHHHHHhCCcccccc--cccc------------eeCCCEEEEECCCHH
Confidence 34556788887 9999999999999999999999999998843221 1112 688899999999999
Q ss_pred HHHHHHHH-HHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEE
Q 018303 82 GTPMAQNL-LKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 160 (358)
Q Consensus 82 G~~~a~~l-~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~v 160 (358)
|+.+|++| ..+|++|.+||+++... . ...+....++++++++||+|++|+|.+..++.++ +++.++.|++|+++
T Consensus 158 G~~vA~~L~~~~g~~V~~~d~~~~~~--~-~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li--~~~~l~~mk~gail 232 (332)
T PRK08605 158 GLAVAKIFAKGYGSDVVAYDPFPNAK--A-ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLF--NADLFKHFKKGAVF 232 (332)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccHh--H-HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhc--CHHHHhcCCCCcEE
Confidence 99999999 67899999999986532 1 1234455689999999999999999999999988 67788999999999
Q ss_pred EEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCC
Q 018303 161 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 195 (358)
Q Consensus 161 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 195 (358)
||++|+..++++++.+++.++.+.....+++..++
T Consensus 233 IN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep 267 (332)
T PRK08605 233 VNCARGSLVDTKALLDALDNGLIKGAALDTYEFER 267 (332)
T ss_pred EECCCCcccCHHHHHHHHHhCCeeEEEEecccCCC
Confidence 99999999999999999999988877777776654
No 48
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.7e-21 Score=175.57 Aligned_cols=256 Identities=21% Similarity=0.271 Sum_probs=206.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-----CCccCCCHHHHh---hcCCEEEEeeCChhhHhh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVA---ASCDVTFAMLADPESAMD 142 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~---~~aDivi~~vp~~~~~~~ 142 (358)
..||+||+|-||+.+|......|++|.+|+|+.++.+.+.+. .+..+.+++|++ +...-|++.|-....+..
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 469999999999999999999999999999999998887653 345566777764 568888888865566788
Q ss_pred hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHH
Q 018303 143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI 222 (358)
Q Consensus 143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~ 222 (358)
++ +++++.|.+|.++||-++..-.|+..-.+.|.+.|+.|+++.+.|++..+..|+. +|.+|++++.+.+.++|..
T Consensus 84 ~I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-iMpGG~~eay~~v~pil~~ 159 (473)
T COG0362 84 VI---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-IMPGGQKEAYELVAPILTK 159 (473)
T ss_pred HH---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-cCCCCCHHHHHHHHHHHHH
Confidence 88 8999999999999999999999999999999999999999999999999999985 7899999999999999998
Q ss_pred hc------CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh---ccccchhhhcccccc
Q 018303 223 MG------KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVSQ---GAISAPMYSLKGPSM 292 (358)
Q Consensus 223 ~g------~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~~---~~~~s~~~~~~~~~~ 292 (358)
+. .++.++|+-|+++.+|+++|.+.+.-+++++|+..+++. .|++.+++.+++.. +-..|.+.+....-+
T Consensus 160 IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL 239 (473)
T COG0362 160 IAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL 239 (473)
T ss_pred HHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 84 356789999999999999999999999999999999988 89999888877764 333444444332222
Q ss_pred ccCCCCCC-CchhhH-----HHHH-HHHHHHHHhcCCCchHHHHH
Q 018303 293 IESLYPTA-FPLKHQ-----QKDL-RLALGLAESVSQSTPIAAAA 330 (358)
Q Consensus 293 ~~~~~~~~-~~~~~~-----~kd~-~~~~~~a~~~gi~~p~~~a~ 330 (358)
...|-..+ .-++.+ +|.+ ++....|-++|+|+|++.+.
T Consensus 240 ~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~ea 284 (473)
T COG0362 240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEA 284 (473)
T ss_pred hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHH
Confidence 22222222 112222 1111 56677888899999886544
No 49
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.87 E-value=4.5e-21 Score=179.83 Aligned_cols=269 Identities=20% Similarity=0.253 Sum_probs=184.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-----------------cCCCHHHHhhcCCEEEEe
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-----------------YQPSPDEVAASCDVTFAM 133 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-----------------~~~~~~~~~~~aDivi~~ 133 (358)
|+|+|||+|.||..+|..|++.|++|.+++|++. .+.+.+.|.. ...+. +.++.+|+|+++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 6899999999999999999999999999999653 3444444432 23344 567889999999
Q ss_pred eCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC--C---CCCCCC---cCCCCceEEE
Q 018303 134 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA--P---VSGSKK---PAEDGQLIFL 205 (358)
Q Consensus 134 vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~--~---~~~~~~---~~~~~~~~~~ 205 (358)
+| +.+...++ +++.+.++++++|+++.++.. ..+.+.+.+... .++.+ + +..++. ....+.+.+
T Consensus 81 vk-~~~~~~~~---~~l~~~~~~~~iii~~~nG~~-~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~l~~- 152 (341)
T PRK08229 81 VK-SAATADAA---AALAGHARPGAVVVSFQNGVR-NADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGALAI- 152 (341)
T ss_pred ec-CcchHHHH---HHHHhhCCCCCEEEEeCCCCC-cHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCceEe-
Confidence 96 56778888 777788889999998876543 334566665442 22222 1 121211 122334332
Q ss_pred ecCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHcC
Q 018303 206 AAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM--------------------MATFSEGLLHSEKVG 265 (358)
Q Consensus 206 ~~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~--------------------~~~~~Ea~~l~~~~G 265 (358)
+ +.+.++.+.++|+..+.++.+.++++...|.|++.|.+.... ..++.|+..++++.|
T Consensus 153 -~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~G 230 (341)
T PRK08229 153 -E-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAG 230 (341)
T ss_pred -c-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcC
Confidence 2 234568899999999999999999999999999999643322 378999999999999
Q ss_pred CCHHHHHHHHhhc-----cccchhhhccccccccCCCCCCCchhhHHHHHH------------HHHHHHHhcCCCchHHH
Q 018303 266 LDPNVLVEVVSQG-----AISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR------------LALGLAESVSQSTPIAA 328 (358)
Q Consensus 266 ~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~~~~a~~~gi~~p~~~ 328 (358)
++++.+.++..++ ...++++....+.+...++. ....+.+|+. ++++.++++|+++|+++
T Consensus 231 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P~~~ 307 (341)
T PRK08229 231 IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPL---ARSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAPVNA 307 (341)
T ss_pred CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCc---cCchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCcHHH
Confidence 9876543332222 12334444333333333322 1245777776 79999999999999999
Q ss_pred HHHHHHHHHHHCCCC-CccHHHHHHHH
Q 018303 329 AANELYKVAKSHGLS-DEDFSAVIEAL 354 (358)
Q Consensus 329 a~~~~~~~a~~~g~~-~~d~~~~~~~~ 354 (358)
.++++++.+.+.|.. ...-.++...+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (341)
T PRK08229 308 RLCALVHEAERAGARPAWSGEALLAEL 334 (341)
T ss_pred HHHHHHHHHHhCCCcCCCChHHHHHHh
Confidence 999999999988753 34333444333
No 50
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.87 E-value=1.4e-20 Score=170.31 Aligned_cols=250 Identities=18% Similarity=0.200 Sum_probs=176.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC----cEEEE-cCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVW-NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~----~V~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
|+|||||+|+||.++++.|.+.|+ +|++| +|++++.+.+.+.|+....+..++++++|+||+|+| +..++.++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 589999999999999999999998 89998 999888877777788888889999999999999995 88899998
Q ss_pred ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCcCCCCceEEEe--cCCHhHHHHHHHHHHH
Q 018303 146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLA--AGDKSLYNTVAPLLDI 222 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~g~~~~~~~v~~ll~~ 222 (358)
.++.+.+++++++|++..+.. .+.+.+.+... .++. +|...... ..+...+.. +++++.++.++++|+.
T Consensus 79 --~~l~~~~~~~~~iIs~~~g~~--~~~l~~~~~~~--~vvr~mP~~~~~~--~~~~~~l~~~~~~~~~~~~~v~~l~~~ 150 (266)
T PLN02688 79 --TELRPLLSKDKLLVSVAAGIT--LADLQEWAGGR--RVVRVMPNTPCLV--GEAASVMSLGPAATADDRDLVATLFGA 150 (266)
T ss_pred --HHHHhhcCCCCEEEEecCCCc--HHHHHHHcCCC--CEEEECCCcHHHH--hCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence 677777889999997755533 33444444322 4553 45443322 222222222 2378889999999999
Q ss_pred hcCCeEEeCCcChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhh-c--cccccccCC-
Q 018303 223 MGKSRFYLGDVGNGAAMKL--VVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYS-L--KGPSMIESL- 296 (358)
Q Consensus 223 ~g~~~~~~g~~g~~~~~k~--~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~-~--~~~~~~~~~- 296 (358)
+|. ++++++.......-+ ....+.+.++.++.|+ +++.|++++.+.+++.++...++.+- . ..+..+...
T Consensus 151 ~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v 226 (266)
T PLN02688 151 VGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMV 226 (266)
T ss_pred CCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence 998 888765221122111 1233455666677777 58899999999999998766665432 2 222222222
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303 297 YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 341 (358)
Q Consensus 297 ~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g 341 (358)
-.|+.+. ...++..++.|++-.+.+++.+.++++.+.+
T Consensus 227 ~spgG~t-------~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 227 TSPGGTT-------IAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred CCCchHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 2454433 3456778889999999999999999998764
No 51
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=1.1e-19 Score=165.48 Aligned_cols=255 Identities=18% Similarity=0.170 Sum_probs=200.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-------------------C-CccCCCHHHHhhcCCEE
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------------------G-AKYQPSPDEVAASCDVT 130 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~aDiv 130 (358)
|||.|||.|.+|...+..|+..||+|+.+|.++.+++.+... | +.+++|..++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 689999999999999999999999999999999988766421 1 56788999999999999
Q ss_pred EEeeCChh---------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcC----CeEecCCCCCCCCcC
Q 018303 131 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKKPA 197 (358)
Q Consensus 131 i~~vp~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~ 197 (358)
++|||.|+ .++.++ +++.+.++..+++|+-|+.++.+.+.+.+.+.... ..++..|.|-.+..+
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava---~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~A 157 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVA---KDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSA 157 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHH---HHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcch
Confidence 99998664 345555 77788888889999999999999999988776653 346666766444322
Q ss_pred C---CCceEEEecC-CHhHHHHHHHHHHHh--cCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018303 198 E---DGQLIFLAAG-DKSLYNTVAPLLDIM--GKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL 271 (358)
Q Consensus 198 ~---~~~~~~~~~g-~~~~~~~v~~ll~~~--g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 271 (358)
- ..+.-+++|. ++.+.+.+++++..+ ...++...+...+++.|+++|.+++.-+..++|...+|++.|+|.+++
T Consensus 158 v~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V 237 (414)
T COG1004 158 VYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQV 237 (414)
T ss_pred hhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 1 1233355555 444677888888665 455666667777999999999999999999999999999999999999
Q ss_pred HHHHhhccccchhhhccccccccCCCCC--CCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303 272 VEVVSQGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS 339 (358)
Q Consensus 272 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~ 339 (358)
.+.+... +++...-..+ |+....++||+...+..++++|.+.++++++.+...+...
T Consensus 238 ~~gIGlD-----------~RIG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~ 296 (414)
T COG1004 238 AEGIGLD-----------PRIGNHFLNAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRKD 296 (414)
T ss_pred HHHcCCC-----------chhhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 9887753 3333222233 4455678999999999999999999999999887766554
No 52
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.85 E-value=6.4e-19 Score=169.72 Aligned_cols=254 Identities=17% Similarity=0.137 Sum_probs=191.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC--CCcEEEEcCCccchhhHHhC-------------------CCccCCCHHHHhhcCC
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISL-------------------GAKYQPSPDEVAASCD 128 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~aD 128 (358)
+|+|+|||+|.+|..+|..|+.. |++|+++|+++++++.+... ...++++..+.+++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 37899999999999999999987 58899999999887765421 1345567778889999
Q ss_pred EEEEeeCChh--------------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc--C--CeEecCCC
Q 018303 129 VTFAMLADPE--------------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--G--ASFLEAPV 190 (358)
Q Consensus 129 ivi~~vp~~~--------------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~--~~~~~~~~ 190 (358)
++++|||.+. .++.++ +.+.+.++++++||.-|+..+...+.+...+.+. + ..+..+|.
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~---~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHH---HHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 9999997554 344555 6777888999999999999999998898887763 2 34566777
Q ss_pred CCCCCcC---CCCceEEEecCC-----HhHHHHHHHHHHHhc-CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018303 191 SGSKKPA---EDGQLIFLAAGD-----KSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHS 261 (358)
Q Consensus 191 ~~~~~~~---~~~~~~~~~~g~-----~~~~~~v~~ll~~~g-~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~ 261 (358)
+-.+-.. -..+.-+++|+. ++..+.+.++++.+- ..++.+.++..+++.|++.|.+....++.++|...+|
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lc 237 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6444222 123333445652 335788888888875 3566778888999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCC--chHHHHHHHHHH
Q 018303 262 EKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS--TPIAAAANELYK 335 (358)
Q Consensus 262 ~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~--~p~~~a~~~~~~ 335 (358)
++.|+|..++.+.+......+ +.++ ...+|+....+.||...+...++++|.+ .++.+++.++.+
T Consensus 238 e~~giD~~eV~~~~~~d~rig-------~~~l--~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~ 304 (473)
T PLN02353 238 EATGADVSQVSHAVGKDSRIG-------PKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMND 304 (473)
T ss_pred HHhCCCHHHHHHHhCCCCcCC-------CCCC--CCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 999999999998877543111 1111 1123445567899999999999999998 778777664443
No 53
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.85 E-value=1.5e-21 Score=181.91 Aligned_cols=152 Identities=10% Similarity=0.060 Sum_probs=125.5
Q ss_pred eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG 82 (358)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG 82 (358)
+...|+|... +++|+++++++.+.|+. + | ++.+++|||||+|+||
T Consensus 84 v~napg~na~--aVAE~~~~~lL~l~r~~---------g-~-----------------------~L~gktvGIIG~G~IG 128 (378)
T PRK15438 84 FSAAPGCNAI--AVVEYVFSSLLMLAERD---------G-F-----------------------SLHDRTVGIVGVGNVG 128 (378)
T ss_pred EEECCCcCch--HHHHHHHHHHHHHhccC---------C-C-----------------------CcCCCEEEEECcCHHH
Confidence 3445677666 89999999999888851 0 1 4667899999999999
Q ss_pred HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhh----HhhhhcccccccccCCCCC
Q 018303 83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES----AMDVACGKHGAASGMGPGK 158 (358)
Q Consensus 83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~----~~~~~~~~~~~~~~l~~~~ 158 (358)
+.+|+++..+|++|++||+..... ... ....++++++++||+|++|+|.+++ |.+++ +++.+..|++|+
T Consensus 129 ~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li--~~~~l~~mk~ga 201 (378)
T PRK15438 129 RRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLA--DEKLIRSLKPGA 201 (378)
T ss_pred HHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCccccccccc--CHHHHhcCCCCc
Confidence 999999999999999999753221 111 1245899999999999999999885 99999 889999999999
Q ss_pred EEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303 159 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 196 (358)
Q Consensus 159 ~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 196 (358)
++||++||..+++++|.++++++.+.....+++..+|.
T Consensus 202 ilIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~ 239 (378)
T PRK15438 202 ILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE 239 (378)
T ss_pred EEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 99999999999999999999998777666777766653
No 54
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.85 E-value=3.8e-20 Score=168.48 Aligned_cols=250 Identities=16% Similarity=0.215 Sum_probs=170.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC----CcEEEEcCCcc-chhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS-KCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDV 143 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g----~~V~~~~~~~~-~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~ 143 (358)
.|+|+|||+|+||.++++.|...| ++|.+++|+++ +.+.+.. .|+....++.++++++|+||+++| +.....+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHHH
Confidence 469999999999999999999987 78999999764 4455544 377777788899999999999996 7888888
Q ss_pred hcccccccccCCCCCEEEEcc-CCChhHHHHHHHHHHhcCCeEecC-CCCCCCCcCCCCceEEEecC---CHhHHHHHHH
Q 018303 144 ACGKHGAASGMGPGKGYVDVS-TVDGDTSKLINGHIKATGASFLEA-PVSGSKKPAEDGQLIFLAAG---DKSLYNTVAP 218 (358)
Q Consensus 144 ~~~~~~~~~~l~~~~~vi~~s-~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~ 218 (358)
+ +++.+.++++++||++. +..+. .+.+.+. .+..++.. |. .+......+..++++ +++.++.+++
T Consensus 82 l---~~l~~~~~~~~liIs~~aGi~~~---~l~~~~~-~~~~v~r~mPn---~~~~~~~~~t~~~~~~~~~~~~~~~v~~ 151 (279)
T PRK07679 82 L---IPFKEYIHNNQLIISLLAGVSTH---SIRNLLQ-KDVPIIRAMPN---TSAAILKSATAISPSKHATAEHIQTAKA 151 (279)
T ss_pred H---HHHHhhcCCCCEEEEECCCCCHH---HHHHHcC-CCCeEEEECCC---HHHHHhcccEEEeeCCCCCHHHHHHHHH
Confidence 8 77777788899999984 44433 3444332 22223322 21 112222334455555 3678899999
Q ss_pred HHHHhcCCeEEeCCcChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccc-hhhh--ccccccc
Q 018303 219 LLDIMGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA-PMYS--LKGPSMI 293 (358)
Q Consensus 219 ll~~~g~~~~~~g~~g~~~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s-~~~~--~~~~~~~ 293 (358)
+|+.+|..++ +.+........+. .+.+.+.++.++.| .+++.|++++.+.+++..+...+ .++. ...+..+
T Consensus 152 l~~~~G~~~~-v~e~~~~~~~a~~Gsgpa~~~~~~eal~e---~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l 227 (279)
T PRK07679 152 LFETIGLVSV-VEEEDMHAVTALSGSGPAYIYYVVEAMEK---AAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSIL 227 (279)
T ss_pred HHHhCCcEEE-eCHHHhhhHHHhhcCHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 9999998554 3321111011111 11223333333333 46899999999999999864433 4544 4567777
Q ss_pred cCCC-CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303 294 ESLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 341 (358)
Q Consensus 294 ~~~~-~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g 341 (358)
.+++ .|++++..+ ++..++.|+.--+.+++.+..+++.+.|
T Consensus 228 ~~~v~spgg~t~~g-------l~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 228 RKEITSPGGTTEAG-------IEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHhcCCCchHHHHH-------HHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 7778 777755554 5566788999999999999999988864
No 55
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.84 E-value=9.9e-20 Score=177.90 Aligned_cols=198 Identities=14% Similarity=0.107 Sum_probs=153.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-------------------CC-CccCCCHHHHhhcCCEE
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT 130 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv 130 (358)
++|||||+|.||..+|..|...|++|.+||+++++.+.+.+ .+ +...+++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 58999999999999999999999999999999887654321 12 56678898999999999
Q ss_pred EEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCC-
Q 018303 131 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD- 209 (358)
Q Consensus 131 i~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 209 (358)
++++|...+++..++ .++.+.++++.+ |.+++..+. ...+.+.+...+..++.+|+... ..++++.+++|+
T Consensus 85 ieavpe~~~vk~~l~--~~l~~~~~~~~i-I~SsTsgi~-~s~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~~ 156 (495)
T PRK07531 85 QESVPERLDLKRRVL--AEIDAAARPDAL-IGSSTSGFL-PSDLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGGK 156 (495)
T ss_pred EEcCcCCHHHHHHHH--HHHHhhCCCCcE-EEEcCCCCC-HHHHHhhcCCcceEEEEecCCCc----ccCceEEEcCCCC
Confidence 999998888888664 445555666765 455444443 33677777666777888876521 234667777774
Q ss_pred --HhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhccccchh
Q 018303 210 --KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMAT-FSEGLLHSEKVGLDPNVLVEVVSQGAISAPM 284 (358)
Q Consensus 210 --~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~-~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~ 284 (358)
++.++.+.++++.+|+++++++. .+.|++.+.+..+ ++|++.++++.|++++++++++..+.+.+|.
T Consensus 157 t~~e~~~~~~~~~~~lG~~~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~ 226 (495)
T PRK07531 157 TSPETIRRAKEILREIGMKPVHIAK--------EIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWA 226 (495)
T ss_pred CCHHHHHHHHHHHHHcCCEEEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCcc
Confidence 79999999999999999999873 3445555655666 5999999999999999999999988766554
No 56
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.84 E-value=3.9e-21 Score=179.71 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=125.1
Q ss_pred eeeeccccccccCCCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhH
Q 018303 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMG 82 (358)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG 82 (358)
+...|+|+.. +++|+++++++++.|+. + . ++.+++|||||+|+||
T Consensus 84 v~napg~na~--aVAE~v~~~lL~l~r~~---------g------------~------------~l~gktvGIIG~G~IG 128 (381)
T PRK00257 84 WSSAPGCNAR--GVVDYVLGSLLTLAERE---------G------------V------------DLAERTYGVVGAGHVG 128 (381)
T ss_pred EEECCCcChH--HHHHHHHHHHHHHhccc---------C------------C------------CcCcCEEEEECCCHHH
Confidence 3445677777 88889998888877741 0 1 4667899999999999
Q ss_pred HHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChh----hHhhhhcccccccccCCCCC
Q 018303 83 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE----SAMDVACGKHGAASGMGPGK 158 (358)
Q Consensus 83 ~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~----~~~~~~~~~~~~~~~l~~~~ 158 (358)
+.+|+++..+|++|++||+.....+ +.....++++++++||+|++|+|.++ .|.+++ +++.+..|++|+
T Consensus 129 ~~va~~l~a~G~~V~~~Dp~~~~~~-----~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li--~~~~l~~mk~ga 201 (381)
T PRK00257 129 GRLVRVLRGLGWKVLVCDPPRQEAE-----GDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLL--DEAFLASLRPGA 201 (381)
T ss_pred HHHHHHHHHCCCEEEEECCcccccc-----cCccccCHHHHHhhCCEEEEeCcCCCCccccccccC--CHHHHhcCCCCe
Confidence 9999999999999999998543211 22234589999999999999999987 699999 889999999999
Q ss_pred EEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCc
Q 018303 159 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 196 (358)
Q Consensus 159 ~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 196 (358)
++||++||.++++++|.++++++.+.....+++..+|.
T Consensus 202 ilIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~ 239 (381)
T PRK00257 202 WLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ 239 (381)
T ss_pred EEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC
Confidence 99999999999999999999998776666677766553
No 57
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.84 E-value=1.2e-19 Score=163.30 Aligned_cols=262 Identities=16% Similarity=0.195 Sum_probs=197.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------------CCccCCCHHHHhhcCCEEEEeeCC
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLAD 136 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivi~~vp~ 136 (358)
++|+|||.|++|+++|..|+..|++|.+|.|+++..+.+.+. ++..++|+.++++++|+|++++|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 589999999999999999999999999999998877665542 24567899999999999999998
Q ss_pred hhhHhhhhcccccccccCCCCCEEEEccCCChh-H----HHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHh
Q 018303 137 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-T----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKS 211 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~-~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 211 (358)
+..++.++ +++...++++..+|+++-|-.. + .+.+.+.+....+.+++.|.+..+........+.+.+.|++
T Consensus 81 s~~~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~ 157 (329)
T COG0240 81 SQALREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQE 157 (329)
T ss_pred hHHHHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHH
Confidence 78999999 7777788999999999776332 2 33444455444578888998887766666666666777899
Q ss_pred HHHHHHHHHHHhcCCeEEeCC-c--ChHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018303 212 LYNTVAPLLDIMGKSRFYLGD-V--GNGAAMKLV--------------VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEV 274 (358)
Q Consensus 212 ~~~~v~~ll~~~g~~~~~~g~-~--g~~~~~k~~--------------~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~ 274 (358)
..++++.+|..-.++++...+ . ..+-++|-+ .|.-...+..+++|+.++....|-.++++..+
T Consensus 158 ~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gL 237 (329)
T COG0240 158 AAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGL 237 (329)
T ss_pred HHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhccc
Confidence 999999999887777776666 2 223333333 35666678899999999999999999988776
Q ss_pred Hhhc----cccchhhhcc--ccccccCCC-----CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 018303 275 VSQG----AISAPMYSLK--GPSMIESLY-----PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKV 336 (358)
Q Consensus 275 ~~~~----~~~s~~~~~~--~~~~~~~~~-----~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~ 336 (358)
-..+ +..|+..+++ +..+.++.- .....+....+....+.++++++++++|+.+++++++..
T Consensus 238 sGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~~ 310 (329)
T COG0240 238 SGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLYE 310 (329)
T ss_pred ccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence 6544 3455555543 222333211 111345556788899999999999999999999998863
No 58
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.83 E-value=1.4e-18 Score=160.90 Aligned_cols=199 Identities=16% Similarity=0.200 Sum_probs=159.6
Q ss_pred CeEEEEcCChh--------------------HHHHHHHHHHCCCcEEEEcCCcc-----chhhHHhCCCccCCCHHHHhh
Q 018303 71 GRIGFLGMGIM--------------------GTPMAQNLLKAGCDVTVWNRTKS-----KCDPLISLGAKYQPSPDEVAA 125 (358)
Q Consensus 71 ~~IgIIG~G~i--------------------G~~~a~~l~~~g~~V~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~ 125 (358)
|+|.|+|+|+. |..+|..|+..|++|++|||+++ ..+.+.+.|+....+..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 57888999886 89999999999999999999876 334455678887888999999
Q ss_pred cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHH-HHHHHHHHh----cCCeEec-CCCCCCCCcCCC
Q 018303 126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS-KLINGHIKA----TGASFLE-APVSGSKKPAED 199 (358)
Q Consensus 126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~-~~l~~~l~~----~~~~~~~-~~~~~~~~~~~~ 199 (358)
+||+||+++|....++.++ .++.+.++++++|||+|++.+... +.+.+.+.. .++.+.+ .++.+. ..
T Consensus 81 ~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Ga----e~ 153 (342)
T PRK12557 81 HGEIHILFTPFGKKTVEIA---KNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGT----PQ 153 (342)
T ss_pred CCCEEEEECCCcHHHHHHH---HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccccc----cc
Confidence 9999999999666589998 778888999999999999988876 566666642 2443432 233332 22
Q ss_pred CceEEEecC--------CHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018303 200 GQLIFLAAG--------DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL 271 (358)
Q Consensus 200 ~~~~~~~~g--------~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 271 (358)
+...++.++ +++.+++++++|+.+|.+++.++ .+.+...|+++|.+.+...++.+|++.++++.|.++...
T Consensus 154 g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~ 232 (342)
T PRK12557 154 HGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEM 232 (342)
T ss_pred chheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 334444443 88899999999999999887777 589999999999999999999999999999999998877
Q ss_pred HHHHhh
Q 018303 272 VEVVSQ 277 (358)
Q Consensus 272 ~~~~~~ 277 (358)
.+-+..
T Consensus 233 ~~~~~~ 238 (342)
T PRK12557 233 IEKQIL 238 (342)
T ss_pred HHHHHH
Confidence 655543
No 59
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=2.4e-18 Score=156.14 Aligned_cols=204 Identities=20% Similarity=0.223 Sum_probs=158.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-------------------CC-CccCCCHHHHhhcCCEE
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT 130 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv 130 (358)
++|||||+|.||..+|..++..|++|+++|.++.+++.+.. .| .+.+++..++ +.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEE
Confidence 79999999999999999999999999999999988776542 12 4455566664 589999
Q ss_pred EEeeCChh---------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc--CCeE------ecCCCCCC
Q 018303 131 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASF------LEAPVSGS 193 (358)
Q Consensus 131 i~~vp~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~------~~~~~~~~ 193 (358)
++|||.+- .++... +.+.+.|++|.+||--|+..|..++.+...+.+. |+.+ ..+|.-..
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa---~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~ 165 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAA---RSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVL 165 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHH---HHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccC
Confidence 99998542 233333 6777889999999999999999999998877664 2222 22343222
Q ss_pred CCcCC---CCceEEEecCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018303 194 KKPAE---DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNV 270 (358)
Q Consensus 194 ~~~~~---~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~ 270 (358)
|-... ....-++.|.+++..+.+..+.+.+-...+.+.+...+++.|+..|.+....+++++|...+|++.|++..+
T Consensus 166 PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwe 245 (436)
T COG0677 166 PGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWE 245 (436)
T ss_pred CCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence 21111 111123334478888889999999977788999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 018303 271 LVEVVSQG 278 (358)
Q Consensus 271 ~~~~~~~~ 278 (358)
+.++.+.-
T Consensus 246 vIeaAnt~ 253 (436)
T COG0677 246 VIEAANTK 253 (436)
T ss_pred HHHHhccC
Confidence 99987753
No 60
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=2.2e-18 Score=153.21 Aligned_cols=256 Identities=18% Similarity=0.239 Sum_probs=203.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-----CCccCCCHHHHh---hcCCEEEEeeCChhhHh
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVA---ASCDVTFAMLADPESAM 141 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~---~~aDivi~~vp~~~~~~ 141 (358)
.+.||+||++-||+.++......|+.|.+|+|+..+++.+.+. .+....|++|++ +...+|++.+.....+.
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD 85 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD 85 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence 3579999999999999999999999999999999988876543 244566888875 45889999987778888
Q ss_pred hhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHH
Q 018303 142 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 221 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~ 221 (358)
..+ +++.+.|.+|.+|||-++....++..-.+.+...|+-|+++.+.+++..+..|+. ++.+|++++...++.+|.
T Consensus 86 ~~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-lMpGg~~~Awp~ik~ifq 161 (487)
T KOG2653|consen 86 QFI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-LMPGGSKEAWPHIKDIFQ 161 (487)
T ss_pred HHH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc-cCCCCChHHHHHHHHHHH
Confidence 999 8999999999999999999888888888999999999999999999999999975 789999999999999998
Q ss_pred Hhc-------CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhhc---cccchhhhcccc
Q 018303 222 IMG-------KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVSQG---AISAPMYSLKGP 290 (358)
Q Consensus 222 ~~g-------~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~~~---~~~s~~~~~~~~ 290 (358)
.+. .++.++|+-|+++.+|++.|.+.+.-++++.|+..++++ .|++.+++.+++..- -.-|.+.+.. .
T Consensus 162 ~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT-~ 240 (487)
T KOG2653|consen 162 KIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEIT-A 240 (487)
T ss_pred HHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHh-H
Confidence 763 346789999999999999999999999999999999999 899988888777642 2223333321 1
Q ss_pred ccccCCCCCCCchhhHHHH-------HHHHHHHHHhcCCCchHHHHH
Q 018303 291 SMIESLYPTAFPLKHQQKD-------LRLALGLAESVSQSTPIAAAA 330 (358)
Q Consensus 291 ~~~~~~~~~~~~~~~~~kd-------~~~~~~~a~~~gi~~p~~~a~ 330 (358)
.+++-+-..|..+-.-..| -.+.+..+.++|+|.|++..+
T Consensus 241 dIlk~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~ea 287 (487)
T KOG2653|consen 241 DILKFKDEDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEA 287 (487)
T ss_pred HHhheeccCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHH
Confidence 2222111222211111111 156777888999999886544
No 61
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.80 E-value=7.6e-19 Score=139.70 Aligned_cols=121 Identities=40% Similarity=0.646 Sum_probs=112.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccc-cccCCCCCCCchhhHHHHHHH
Q 018303 234 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPS-MIESLYPTAFPLKHQQKDLRL 312 (358)
Q Consensus 234 g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~kd~~~ 312 (358)
|++...|+++|.+....+.+++|++.++++.|+|++.+.+++..+.+.|++++.+.+. +..+++.++|+++.+.||+.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 6789999999999999999999999999999999999999999999999999998885 888999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHH
Q 018303 313 ALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL 354 (358)
Q Consensus 313 ~~~~a~~~gi~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~ 354 (358)
+.+++++.|+|+|+.+.+.+.++.+.++|++++|+++++++|
T Consensus 81 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 81 ALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999986
No 62
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.80 E-value=2.8e-18 Score=157.00 Aligned_cols=188 Identities=15% Similarity=0.192 Sum_probs=143.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------C-------------CCccCCCHHHHhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAAS 126 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~ 126 (358)
++|+|||+|.||..+|..|+..|++|++||++++..+.+.+ . ++..+.++.+++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 47999999999999999999999999999999887665431 0 13456788889999
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccCCCCCEE-EEccCCChhHHHHHHHHHHh----cCCeEecCCCCCCCCcCCCCc
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQ 201 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~ 201 (358)
||+|++|+|...+++..++ .++.+.+++++++ +|+|+..+.. +.+.+.. .+++++ .|+.. ++
T Consensus 82 aD~Vi~avpe~~~~k~~~~--~~l~~~~~~~~il~~~tSt~~~~~---l~~~~~~~~r~~g~h~~-~Pv~~-------~~ 148 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVF--ETADAHAPAECYIATNTSTMSPTE---IASFTKRPERVIAMHFF-NPVHK-------MK 148 (288)
T ss_pred CCEEEEeccCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcccEEEEecC-CCccc-------Cc
Confidence 9999999998888777664 4566778889876 6888877754 4444432 244555 45433 35
Q ss_pred eEEEecC---CHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 018303 202 LIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ 277 (358)
Q Consensus 202 ~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 277 (358)
++.++++ +++.++.+.++++.+|+.++++++ +| ++.|-+.. ..++|++.++++.-.++++++..+..
T Consensus 149 Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~G------f~~nRl~~---~~~~ea~~~~~~gv~~~~~iD~~~~~ 219 (288)
T PRK09260 149 LVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPG------FVTSRISA---LVGNEAFYMLQEGVATAEDIDKAIRL 219 (288)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCccc------HHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 7777777 899999999999999999999998 77 45454444 34669988888755789999998876
Q ss_pred ccc
Q 018303 278 GAI 280 (358)
Q Consensus 278 ~~~ 280 (358)
+.+
T Consensus 220 g~g 222 (288)
T PRK09260 220 GLN 222 (288)
T ss_pred CCC
Confidence 543
No 63
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.79 E-value=1e-17 Score=156.14 Aligned_cols=258 Identities=15% Similarity=0.155 Sum_probs=169.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--C------------CccCCCHHHHh-hcCCEEEEeeC
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--G------------AKYQPSPDEVA-ASCDVTFAMLA 135 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--g------------~~~~~~~~~~~-~~aDivi~~vp 135 (358)
|+|+|||+|.||+.+|..|++.|++|.+|+|+++..+.+... + +....+..+.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 579999999999999999999999999999988766555442 1 12345666766 58999999995
Q ss_pred ChhhHhhhhcccccccc-cCCCCCEEEEccCCChhH-----HHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCC
Q 018303 136 DPESAMDVACGKHGAAS-GMGPGKGYVDVSTVDGDT-----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD 209 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~-~l~~~~~vi~~s~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 209 (358)
+.+++.++ +++.+ .++++..++.+..|.... .+.+.+.+....+..+..|.+..+..........+.+.+
T Consensus 81 -s~~~~~~l---~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~ 156 (326)
T PRK14620 81 -TQQLRTIC---QQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQN 156 (326)
T ss_pred -HHHHHHHH---HHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence 88999998 77776 777787777777665331 334455544333444444443221111111223344455
Q ss_pred HhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHcCC--CHHH
Q 018303 210 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS-----------------MMATFSEGLLHSEKVGL--DPNV 270 (358)
Q Consensus 210 ~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~-----------------~~~~~~Ea~~l~~~~G~--~~~~ 270 (358)
.+..+.+.++|+.-+.++....+.-...|.|++.|.+... +..++.|+..++++.|. ++++
T Consensus 157 ~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~ 236 (326)
T PRK14620 157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNT 236 (326)
T ss_pred HHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 6666777788877777787778866688999998875433 46789999999999987 7888
Q ss_pred HH------HHHhhccccchhhhccc-------cccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 018303 271 LV------EVVSQGAISAPMYSLKG-------PSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELY 334 (358)
Q Consensus 271 ~~------~~~~~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~ 334 (358)
++ +.+.... +...+++. .++.++-.....+.-.....++.+.++++++|+++|+++.+++++
T Consensus 237 ~~gl~g~gdl~~t~~--~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~ 311 (326)
T PRK14620 237 LIGPSCLGDLILTCT--TLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLL 311 (326)
T ss_pred hhccchhhhhhheec--CCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 84 4442211 11111111 122221111111112233445789999999999999999999887
No 64
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.79 E-value=1.1e-17 Score=156.22 Aligned_cols=273 Identities=16% Similarity=0.158 Sum_probs=190.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC---------------CccCCCHHHHhhcCCEEEEee
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG---------------AKYQPSPDEVAASCDVTFAML 134 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g---------------~~~~~~~~~~~~~aDivi~~v 134 (358)
.|+|+|||+|.||+.+|..|+..| +|.+|.++++..+.+.+.+ +...+++.++++++|+|++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilav 85 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGV 85 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEe
Confidence 368999999999999999999998 6888888887766554321 234567778889999999999
Q ss_pred CChhhHhhhhcccccccccCCCCCEEEEccCCChhH-----HHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCC
Q 018303 135 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD 209 (358)
Q Consensus 135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 209 (358)
| +..++.++ +++.+.++++..+|+++.|-... .+.+.+.+......++..|.+..+.........++.+.+
T Consensus 86 p-s~~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~ 161 (341)
T PRK12439 86 P-SHGFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPD 161 (341)
T ss_pred C-HHHHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCC
Confidence 7 78899999 88888888888899988775542 334444443223345555654433222222223444557
Q ss_pred HhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHcCCCHHHHH
Q 018303 210 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG-----------------SMMATFSEGLLHSEKVGLDPNVLV 272 (358)
Q Consensus 210 ~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~-----------------~~~~~~~Ea~~l~~~~G~~~~~~~ 272 (358)
++..+.++.+|+.-+.+++...+.-..+|.+.+-|.+.. .+..++.|+.+++++.|.++++++
T Consensus 162 ~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~ 241 (341)
T PRK12439 162 QHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFA 241 (341)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 778889999999999999888885558888888775443 356799999999999999999988
Q ss_pred HHHhhc----cccchhhhcc--ccccccCCCCC-----CCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303 273 EVVSQG----AISAPMYSLK--GPSMIESLYPT-----AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 341 (358)
Q Consensus 273 ~~~~~~----~~~s~~~~~~--~~~~~~~~~~~-----~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g 341 (358)
.+..-+ +..|...+++ +..+.++.... -..+..+......+.++++++++++|+++++++++.
T Consensus 242 gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il~------ 315 (341)
T PRK12439 242 GLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVIN------ 315 (341)
T ss_pred ccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHHh------
Confidence 765543 2333333332 23333321100 012344566778899999999999999999999884
Q ss_pred CCCccHHHHHHHH
Q 018303 342 LSDEDFSAVIEAL 354 (358)
Q Consensus 342 ~~~~d~~~~~~~~ 354 (358)
++.+...+++.+
T Consensus 316 -~~~~~~~~~~~l 327 (341)
T PRK12439 316 -HGSTVEQAYRGL 327 (341)
T ss_pred -CCCCHHHHHHHH
Confidence 344555555443
No 65
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.79 E-value=3.5e-17 Score=150.09 Aligned_cols=195 Identities=12% Similarity=0.133 Sum_probs=145.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------C---------CCccCCCHHHHhhcCCEE
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L---------GAKYQPSPDEVAASCDVT 130 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~---------g~~~~~~~~~~~~~aDiv 130 (358)
++|+|||+|.||..+|..++..|++|.+||++++..+.... . .+...+++++++++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 58999999999999999999999999999999875443211 1 235567888999999999
Q ss_pred EEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEec---
Q 018303 131 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA--- 207 (358)
Q Consensus 131 i~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 207 (358)
+.++|...++++.+| +++.+.++++++|- +++. .....++.+.+... -.++..+.+..+... +++-++.
T Consensus 88 iEavpE~l~vK~~lf--~~l~~~~~~~aIla-SnTS-~l~~s~la~~~~~p-~R~~g~HffnP~~~~---pLVEVv~g~~ 159 (321)
T PRK07066 88 QESAPEREALKLELH--ERISRAAKPDAIIA-SSTS-GLLPTDFYARATHP-ERCVVGHPFNPVYLL---PLVEVLGGER 159 (321)
T ss_pred EECCcCCHHHHHHHH--HHHHHhCCCCeEEE-ECCC-ccCHHHHHHhcCCc-ccEEEEecCCccccC---ceEEEeCCCC
Confidence 999999999999886 67777888888444 4333 44445677766432 245555444443322 3333333
Q ss_pred CCHhHHHHHHHHHHHhcCCeEEeC-C-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccc
Q 018303 208 GDKSLYNTVAPLLDIMGKSRFYLG-D-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA 282 (358)
Q Consensus 208 g~~~~~~~v~~ll~~~g~~~~~~g-~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s 282 (358)
.+++.++.+..+++.+|+.++.+. + +| ++.|-+... .++|++.+.++...++++++.++..+.+..
T Consensus 160 T~~e~~~~~~~f~~~lGk~pV~v~kd~pG------Fi~NRl~~a---~~~EA~~lv~eGvas~edID~a~~~g~g~r 227 (321)
T PRK07066 160 TAPEAVDAAMGIYRALGMRPLHVRKEVPG------FIADRLLEA---LWREALHLVNEGVATTGEIDDAIRFGAGIR 227 (321)
T ss_pred CCHHHHHHHHHHHHHcCCEeEecCCCCcc------HHHHHHHHH---HHHHHHHHHHhCCCCHHHHHHHHHhCCCCC
Confidence 378999999999999999999884 5 77 555554443 467999999998899999999998776553
No 66
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.78 E-value=7.9e-18 Score=164.34 Aligned_cols=186 Identities=19% Similarity=0.309 Sum_probs=146.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhH-----------HhCC-------------CccCCCHHHHhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAAS 126 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~ 126 (358)
++|||||+|.||..||..++..|++|.+||++++..+.. .+.| +....++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 589999999999999999999999999999999877652 3334 466678866 569
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccCCCCCEEE-EccCCChhHHHHHHHHHHh----cCCeEec-CCCCCCCCcCCCC
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLE-APVSGSKKPAEDG 200 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~----~~~~~~~-~~~~~~~~~~~~~ 200 (358)
||+||.++|++.++++.+| .++....++++++. |+|+.++. .+.+.+.. .|++|++ +|++
T Consensus 87 aDlViEav~E~~~vK~~vf--~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~--------- 152 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALF--AQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM--------- 152 (507)
T ss_pred CCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC---------
Confidence 9999999999999999986 44555567888884 88887775 45555443 2667776 4444
Q ss_pred ceEEEecC---CHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303 201 QLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 276 (358)
Q Consensus 201 ~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 276 (358)
+++.+++| +++.++.+.++++.+|+.++++++ +| ++.|-+.. ..++|++.++++.+++++++++++.
T Consensus 153 ~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~~~~~~iD~al~ 223 (507)
T PRK08268 153 KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGVADPATIDAILR 223 (507)
T ss_pred eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35666664 899999999999999999999998 77 45454443 3678999999999999999999997
Q ss_pred hccc
Q 018303 277 QGAI 280 (358)
Q Consensus 277 ~~~~ 280 (358)
.+.+
T Consensus 224 ~~~G 227 (507)
T PRK08268 224 EAAG 227 (507)
T ss_pred hcCC
Confidence 6543
No 67
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.78 E-value=1e-17 Score=151.19 Aligned_cols=251 Identities=14% Similarity=0.164 Sum_probs=174.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC----cEEEEcCCccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~----~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++|||||+|+||.++++.|.+.|+ +|+++||++++.+.+.+ .|+....+..+++++||+||+|+| +..+..++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-
Confidence 489999999999999999998874 69999999888777664 577677788899999999999996 78999999
Q ss_pred ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCcCCCCceEEEecC--CHhHHHHHHHHHHH
Q 018303 146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDI 222 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~ 222 (358)
+++.+.+++++++|++..|-.. +.+.+.+... ..++ -.|.. +.....+...+..+. +++..+.++.+|+.
T Consensus 81 --~~l~~~~~~~~lvISi~AGi~i--~~l~~~l~~~-~~vvR~MPN~--~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~ 153 (272)
T PRK12491 81 --NQIKDQIKNDVIVVTIAAGKSI--KSTENEFDRK-LKVIRVMPNT--PVLVGEGMSALCFNEMVTEKDIKEVLNIFNI 153 (272)
T ss_pred --HHHHHhhcCCcEEEEeCCCCcH--HHHHHhcCCC-CcEEEECCCh--HHHHcCceEEEEeCCCCCHHHHHHHHHHHHc
Confidence 7777778888999988766554 4566666432 1222 22332 222333444333332 56678899999999
Q ss_pred hcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc-cchhhhc--cccccccCCC
Q 018303 223 MGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSL--KGPSMIESLY 297 (358)
Q Consensus 223 ~g~~~~~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~-~s~~~~~--~~~~~~~~~~ 297 (358)
+|... .+.+ .....++--....+.+.++.++.++. .+.|++.++..+++.++.. ...++.. ..|..+.+..
T Consensus 154 ~G~~~-~~~E~~~d~~talsgsgPAf~~~~~eal~~a~---v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V 229 (272)
T PRK12491 154 FGQTE-VVNEKLMDVVTSISGSSPAYVYMFIEAMADAA---VLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMV 229 (272)
T ss_pred CCCEE-EEcHHHhhhHHHhccCcHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence 99864 5554 33222332234455555555555554 8899999999999998643 3333322 2233333333
Q ss_pred -CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303 298 -PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 341 (358)
Q Consensus 298 -~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g 341 (358)
+||.+... .++..++.|+.--+.+++.+..+++.+.+
T Consensus 230 ~sPGGtT~~-------gl~~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 230 CSPGGTTIE-------AVATLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred CCCchHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 57665444 35677789999999999999999987753
No 68
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.78 E-value=1e-16 Score=145.73 Aligned_cols=192 Identities=16% Similarity=0.318 Sum_probs=141.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHhCCCc-cCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGK 147 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~ 147 (358)
|+|+|||+|.||..+++.|...|+ +|.+||++++..+.+.+.|.. ...+..++. ++|+||+|+| +..+..++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp-~~~~~~~~--- 75 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIP-VDAIIEIL--- 75 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCc-HHHHHHHH---
Confidence 479999999999999999999885 788999998877777666653 345677765 5999999997 66777788
Q ss_pred ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCC----CCcC----CCCceEEEec---CCHhHHHH
Q 018303 148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGS----KKPA----EDGQLIFLAA---GDKSLYNT 215 (358)
Q Consensus 148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~----~~~~----~~~~~~~~~~---g~~~~~~~ 215 (358)
.++.+ ++++++|+++++......+.+.+. .+..+++. |+.+. +... ..+..++++. .+++.++.
T Consensus 76 ~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~ 151 (275)
T PRK08507 76 PKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQER 151 (275)
T ss_pred HHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHH
Confidence 77777 889999999877665544444333 22356765 87654 2221 1455555554 36778899
Q ss_pred HHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303 216 VAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 276 (358)
Q Consensus 216 v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 276 (358)
+.++++.+|.+++++++.+++...++++++.. ....++.+++ . .+.+.+.+.++..
T Consensus 152 v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~---~-~~~~~~~~~~~~~ 207 (275)
T PRK08507 152 AKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTV---L-KEEDERNIFDLAG 207 (275)
T ss_pred HHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHH---H-hcCChHHHHhhcc
Confidence 99999999999999999999999999998865 4444555554 1 3556665545443
No 69
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.78 E-value=4.8e-17 Score=153.48 Aligned_cols=180 Identities=16% Similarity=0.241 Sum_probs=141.7
Q ss_pred CCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303 69 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 147 (358)
Q Consensus 69 ~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~ 147 (358)
..++|+||| +|.||..+|+.|...|++|.+||++.. .+.++++++||+||+|+|. ..+..++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~-~~~~~~~--- 159 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPI-HLTEEVI--- 159 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcH-HHHHHHH---
Confidence 447999998 999999999999999999999998531 2567888999999999984 4677777
Q ss_pred ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCcCCCCceEEEecC-CHhHHHHHHHHHHHhcC
Q 018303 148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGK 225 (358)
Q Consensus 148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~v~~ll~~~g~ 225 (358)
+++.+ +++|++|+|+++.+......+.+.+. + .|+ .+|++|.+.....+..+++..+ +++.++.+.++++.+|.
T Consensus 160 ~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~-~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~ 235 (374)
T PRK11199 160 ARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--G-PVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGA 235 (374)
T ss_pred HHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--C-CEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCC
Confidence 66766 89999999999988776666665542 2 477 6788887665555566666655 66788999999999999
Q ss_pred CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018303 226 SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVE 273 (358)
Q Consensus 226 ~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~ 273 (358)
+++.+++.+++..+++++.+ .++.+++++..+++ .+.+.+.+.+
T Consensus 236 ~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 236 RLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred EEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 99999999999999999844 44455666666655 6778776544
No 70
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.77 E-value=1.2e-17 Score=162.64 Aligned_cols=186 Identities=18% Similarity=0.205 Sum_probs=142.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhH-----------HhCC-------------CccCCCHHHHhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAAS 126 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~ 126 (358)
++|||||+|.||..||..++..|++|.+||++++..+.. .+.| +..++++++ +.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 589999999999999999999999999999998876542 2223 345677766 569
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccCCCCCEEE-EccCCChhHHHHHHHHHHh----cCCeEec-CCCCCCCCcCCCC
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLE-APVSGSKKPAEDG 200 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~----~~~~~~~-~~~~~~~~~~~~~ 200 (358)
||+||.|+|.+.+++..+| .++....++++++. |+|+..+. .+.+.+.. .|+||++ +|++
T Consensus 85 aDlVIEav~E~~~vK~~vf--~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~--------- 150 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALF--AQLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVM--------- 150 (503)
T ss_pred CCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccC---------
Confidence 9999999999999999886 44555667777766 55554443 34454432 3566666 3443
Q ss_pred ceEEEecC---CHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303 201 QLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 276 (358)
Q Consensus 201 ~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 276 (358)
+++.+++| +++.++.+.++++.+|+.++++++ +| ++.|-+.. ..++|++.++++.+++++++++++.
T Consensus 151 ~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrl~~---~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 151 ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPG------FIVNRVAR---PYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCC------cHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 36677777 899999999999999999999998 77 34444443 4778999999999999999999998
Q ss_pred hccc
Q 018303 277 QGAI 280 (358)
Q Consensus 277 ~~~~ 280 (358)
.+.+
T Consensus 222 ~~~G 225 (503)
T TIGR02279 222 DGAG 225 (503)
T ss_pred hcCC
Confidence 6533
No 71
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.77 E-value=1.3e-16 Score=153.33 Aligned_cols=196 Identities=19% Similarity=0.300 Sum_probs=147.4
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhH-HhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303 71 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 148 (358)
Q Consensus 71 ~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~ 148 (358)
|+|+||| +|.||..+|+.|...|++|.+|+|+++..... .+.|+....+..+.+.++|+|++|+| +..+..++ +
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp-~~~~~~vl---~ 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVP-INVTEDVI---K 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecC-HHHHHHHH---H
Confidence 5899997 89999999999999999999999988765333 33466666788888999999999998 56778888 7
Q ss_pred cccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCCCcCCCCceEEEecC---CHhHHHHHHHHHHHhc
Q 018303 149 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSKKPAEDGQLIFLAAG---DKSLYNTVAPLLDIMG 224 (358)
Q Consensus 149 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~ll~~~g 224 (358)
++.+.++++++++|+++......+.+.+.++ .+..++++ |++|.......+..++++.+ +++.++.++++|+.+|
T Consensus 77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G 155 (437)
T PRK08655 77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEG 155 (437)
T ss_pred HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 8888899999999999988887777777754 35678876 88775544455666666544 5778899999999999
Q ss_pred CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018303 225 KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV 275 (358)
Q Consensus 225 ~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~ 275 (358)
.+++.+++..+......+ +.+..+...++..+ +++.|++.+...++.
T Consensus 156 ~~v~~~~~e~HD~~~a~v-s~lph~~a~al~~~---l~~~g~~~~~~~~~a 202 (437)
T PRK08655 156 ARVIVTSPEEHDRIMSVV-QGLTHFAYISIAST---LKRLGVDIKESRKFA 202 (437)
T ss_pred CEEEECCHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHcCCCHHHHHhhc
Confidence 999988887655555333 33333333333333 366798887765443
No 72
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.76 E-value=6.8e-17 Score=143.03 Aligned_cols=249 Identities=19% Similarity=0.231 Sum_probs=174.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC----CcEEEEcCCccchhhHH-hCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLI-SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g----~~V~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++|||||+|+||++++..|.+.| .+|++.+|++++.+.+. +.|+..+.+..+++.++|+|+++| +|...+.++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~~~vl- 79 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDLEEVL- 79 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhHHHHH-
Confidence 68999999999999999999998 68999999998886443 446655678889999999999999 799999999
Q ss_pred ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCcCCCCceEEEec--CCHhHHHHHHHHHHH
Q 018303 146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI 222 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~ 222 (358)
.++.+ ..++++||.+..+-+. +.+.+.+. +..++. .|... .....+...+..+ .+++..+.+..+|+.
T Consensus 80 --~~l~~-~~~~~lvISiaAGv~~--~~l~~~l~--~~~vvR~MPNt~--a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~ 150 (266)
T COG0345 80 --SKLKP-LTKDKLVISIAAGVSI--ETLERLLG--GLRVVRVMPNTP--ALVGAGVTAISANANVSEEDKAFVEALLSA 150 (266)
T ss_pred --HHhhc-ccCCCEEEEEeCCCCH--HHHHHHcC--CCceEEeCCChH--HHHcCcceeeecCccCCHHHHHHHHHHHHh
Confidence 66666 7789999987665444 45777775 333433 23322 2223344434333 277888899999999
Q ss_pred hcCCeEEeCCcChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-ccchhhhccc--cccccCCC
Q 018303 223 MGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKG--PSMIESLY 297 (358)
Q Consensus 223 ~g~~~~~~g~~g~~~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~-~~s~~~~~~~--~~~~~~~~ 297 (358)
+|..+ .+.+.....+..+. ...+.+.++.++.++ +.+.|++.+...+++.++. |...++.... |..++...
T Consensus 151 ~G~v~-~v~E~~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~V 226 (266)
T COG0345 151 VGKVV-EVEESLMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQV 226 (266)
T ss_pred cCCeE-EechHHhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence 99755 44453333333333 344444444444443 4889999999999999864 3344444433 33444444
Q ss_pred -CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303 298 -PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 341 (358)
Q Consensus 298 -~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g 341 (358)
+||.+.... ++..++.|+..-+.+++.+.++++.+.|
T Consensus 227 tSPGGtTiag-------l~~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 227 TSPGGTTIAG-------LRVLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred cCCCchHHHH-------HHHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 677765554 3455588999999999999999888754
No 73
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.76 E-value=8.3e-17 Score=145.80 Aligned_cols=252 Identities=18% Similarity=0.176 Sum_probs=165.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC---CcEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g---~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
+|+|+|||+|+||..+++.|...| ++|.+++|++++.+.+.+. ++....+..++++++|+|++|+| +..++.++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~-~~~~~~v~- 79 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVK-PQVMEEVL- 79 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcC-HHHHHHHH-
Confidence 368999999999999999999988 7899999998887777664 67677788888999999999996 77888888
Q ss_pred ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCCCcCCCCceEEEecC--CHhHHHHHHHHHHH
Q 018303 146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDI 222 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~ 222 (358)
+++.+.+ +++||+++.+... +.+.+.+. .+..++.. |. .+.....+...+..+. +++..+.++.+|+.
T Consensus 80 --~~l~~~~--~~~vvs~~~gi~~--~~l~~~~~-~~~~iv~~~P~--~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~ 150 (267)
T PRK11880 80 --SELKGQL--DKLVVSIAAGVTL--ARLERLLG-ADLPVVRAMPN--TPALVGAGMTALTANALVSAEDRELVENLLSA 150 (267)
T ss_pred --HHHHhhc--CCEEEEecCCCCH--HHHHHhcC-CCCcEEEecCC--chHHHcCceEEEecCCCCCHHHHHHHHHHHHh
Confidence 6665555 5788888776643 34555553 23344432 32 2222333333334443 78889999999999
Q ss_pred hcCCeEEeC-CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc-cchhhhc--cccccccCCC-
Q 018303 223 MGKSRFYLG-DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSL--KGPSMIESLY- 297 (358)
Q Consensus 223 ~g~~~~~~g-~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~-~s~~~~~--~~~~~~~~~~- 297 (358)
+|. ++.+. +.....+.-+..+...+ ....+..+...+.+.|+++++..+++..... ....+.. ..+..+....
T Consensus 151 lG~-~~~~~~e~~~d~~~a~~~~~pa~-~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~v~ 228 (267)
T PRK11880 151 FGK-VVWVDDEKQMDAVTAVSGSGPAY-VFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDNVT 228 (267)
T ss_pred CCe-EEEECChHhcchHHHHhcChHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCC
Confidence 997 44555 33323333333332111 1122223333357899999999988887532 2222221 1122221112
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303 298 PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 341 (358)
Q Consensus 298 ~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g 341 (358)
.||.+ +...++..++.|++-.+.+++.+.++++.+.+
T Consensus 229 tpgG~-------t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 229 SPGGT-------TIAALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred CCcHH-------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 34433 34456778889999999999999999998753
No 74
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.76 E-value=4.9e-17 Score=146.45 Aligned_cols=244 Identities=16% Similarity=0.153 Sum_probs=161.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCc---EEEEcCCccchhhHHhC--CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCD---VTVWNRTKSKCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~---V~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
|+|||||+|+||+.+++.|...|+. +.+++|++++.+.+.+. +...+.+..++++++|+|++|+| +.....++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl- 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL- 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 4799999999999999999988854 57899998887776653 45667789999999999999997 78888888
Q ss_pred ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHhHHHHHHHHHHHhcC
Q 018303 146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK 225 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~ 225 (358)
+++ .+++++++|+++. ....+.+.+.+......+..+|+.... ...+. ..++.++ +.++++|+.+|.
T Consensus 79 --~~l--~~~~~~~vis~~a--g~~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~-t~~~~~~----~~~~~l~~~lG~ 145 (258)
T PRK06476 79 --RAL--RFRPGQTVISVIA--ATDRAALLEWIGHDVKLVRAIPLPFVA--ERKGV-TAIYPPD----PFVAALFDALGT 145 (258)
T ss_pred --HHh--ccCCCCEEEEECC--CCCHHHHHHHhCCCCCEEEECCCChhh--hCCCC-eEecCCH----HHHHHHHHhcCC
Confidence 554 2578899998764 445556777775444455566663222 22232 2333332 579999999998
Q ss_pred CeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccc-hh-hhc--cccccccCC-CCCC
Q 018303 226 SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA-PM-YSL--KGPSMIESL-YPTA 300 (358)
Q Consensus 226 ~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s-~~-~~~--~~~~~~~~~-~~~~ 300 (358)
.++ +.+...-..+..+.. ..+.....+.++..++++.|++++++.+++......+ .+ ... ..+..+.+. -+||
T Consensus 146 ~~~-~~~e~~~d~~~a~~s-~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spg 223 (258)
T PRK06476 146 AVE-CDSEEEYDLLAAASA-LMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKG 223 (258)
T ss_pred cEE-ECChHhccceeehhc-cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCC
Confidence 776 443221111211222 2333335677888889999999999999988754332 23 121 222333333 3566
Q ss_pred CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303 301 FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK 338 (358)
Q Consensus 301 ~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~ 338 (358)
.+... .++..++.|+.-.+.+++.+..+++.
T Consensus 224 GtT~~-------gl~~le~~~~~~~~~~a~~aa~~r~~ 254 (258)
T PRK06476 224 GLNEQ-------VLNDFSRQGGYAALTDALDRVLRRIN 254 (258)
T ss_pred chHHH-------HHHHHHHCChHHHHHHHHHHHHHHhh
Confidence 54444 35566778888888777777766654
No 75
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.76 E-value=7.2e-17 Score=146.88 Aligned_cols=175 Identities=18% Similarity=0.251 Sum_probs=133.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-cCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 149 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~ 149 (358)
|+|+|||+|.||..+|..|.+.|++|.+||++++..+.+.+.|.. ...+..+.++++|+||+|+| +..+..++ ++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp-~~~~~~~~---~~ 76 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALP-IGLLLPPS---EQ 76 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCC-HHHHHHHH---HH
Confidence 489999999999999999999999999999998877777666542 22233356789999999997 66677777 77
Q ss_pred ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCc-C-------CCCceEEEec---CCHhHHHHHH
Q 018303 150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-A-------EDGQLIFLAA---GDKSLYNTVA 217 (358)
Q Consensus 150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~-~-------~~~~~~~~~~---g~~~~~~~v~ 217 (358)
+.+.++++.+++|+++.+....+.+.+.. ..|++ +|+++.+.. . -.+..++++. ++++.++.++
T Consensus 77 l~~~l~~~~ii~d~~Svk~~~~~~~~~~~----~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~ 152 (279)
T PRK07417 77 LIPALPPEAIVTDVGSVKAPIVEAWEKLH----PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVE 152 (279)
T ss_pred HHHhCCCCcEEEeCcchHHHHHHHHHHhh----CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHH
Confidence 87888899999999888765544443322 24776 688776521 1 1233344433 4778899999
Q ss_pred HHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHH
Q 018303 218 PLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMAT 253 (358)
Q Consensus 218 ~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~ 253 (358)
++++.+|.+++++++.+++...+++++........+
T Consensus 153 ~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l 188 (279)
T PRK07417 153 ELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAAL 188 (279)
T ss_pred HHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHH
Confidence 999999999999999999999999988776655433
No 76
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.75 E-value=9.3e-17 Score=148.32 Aligned_cols=255 Identities=18% Similarity=0.174 Sum_probs=169.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-------------cCCCHHHHhhcCCEEEEeeCCh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------------YQPSPDEVAASCDVTFAMLADP 137 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~aDivi~~vp~~ 137 (358)
|+|+|||+|.||..+|..|++.|++|.+++| +++.+.+.+.|.. ..++.+++.+.+|+|++|+| +
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk-~ 78 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK-A 78 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec-c
Confidence 5899999999999999999999999999999 6666666554421 13455666688999999996 6
Q ss_pred hhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc----CCeEecCCCCCCCCcCCCCceEEEecC----C
Q 018303 138 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKPAEDGQLIFLAAG----D 209 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g----~ 209 (358)
.+++.++ +.+.+.+.++.+||.+.++- ...+.+.+.+.+. ++.++.+...+.......+...+..+. .
T Consensus 79 ~~~~~~~---~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 79 YQLDAAI---PDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred cCHHHHH---HHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 7888888 77777788888888887764 3344566665443 223333333322111111211222322 2
Q ss_pred HhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH
Q 018303 210 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGLDP 268 (358)
Q Consensus 210 ~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~---------------------~~~~~~Ea~~l~~~~G~~~ 268 (358)
.+..+.+..+|...|..+....+.....|.|++.|...+. +..++.|...++++.|++.
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3456678888888888777777788899999998865533 4467899999999999863
Q ss_pred --HHHHHHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303 269 --NVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK 338 (358)
Q Consensus 269 --~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~ 338 (358)
+...+.+...... .....++|.+ |+..+ .+++.+ .+.++++++++|+++|.++.+.++++...
T Consensus 235 ~~~~~~~~~~~~~~~---~~~~~sSm~~-D~~~gr~tEid~i---~G~vv~~a~~~gv~~P~~~~l~~~~~~~~ 301 (305)
T PRK12921 235 RDDVVEEIVKIFAGA---PGDMKTSMLR-DMEKGRPLEIDHL---QGVLLRRARAHGIPTPILDTVYALLKAYE 301 (305)
T ss_pred ChhHHHHHHHHHhcc---CCCCCcHHHH-HHHcCCcccHHHH---HHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence 3333333321000 0011222332 22222 234444 67899999999999999999999987654
No 77
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.74 E-value=3.1e-16 Score=146.24 Aligned_cols=260 Identities=12% Similarity=0.034 Sum_probs=183.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCC-------CcEEEEcCCccc-----hhhHHhC--------------CCccCCCHHH
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKSK-----CDPLISL--------------GAKYQPSPDE 122 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g-------~~V~~~~~~~~~-----~~~~~~~--------------g~~~~~~~~~ 122 (358)
..++|+|||.|+||+++|..|...| ++|.+|.|+++. .+.+.+. ++..++|+.+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 3469999999999999999999876 899999998752 3433321 2344678889
Q ss_pred HhhcCCEEEEeeCChhhHhhhhcccccccc--cCCCCCEEEEccCCChh-------HHHHHHHHHHhcCCeEecCCCCCC
Q 018303 123 VAASCDVTFAMLADPESAMDVACGKHGAAS--GMGPGKGYVDVSTVDGD-------TSKLINGHIKATGASFLEAPVSGS 193 (358)
Q Consensus 123 ~~~~aDivi~~vp~~~~~~~~~~~~~~~~~--~l~~~~~vi~~s~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~~ 193 (358)
+++++|+|++++| +..++.++ +++.+ .++++.++|+++-|-.. ..+.+.+.+. ..+.++..|.+..
T Consensus 90 av~~aDiIvlAVP-sq~l~~vl---~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~-~~~~~LsGPs~A~ 164 (365)
T PTZ00345 90 AVEDADLLIFVIP-HQFLESVL---SQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG-IPCCALSGANVAN 164 (365)
T ss_pred HHhcCCEEEEEcC-hHHHHHHH---HHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC-CCeEEEECCCHHH
Confidence 9999999999997 88899999 77776 67778889988665332 2334444442 3566778888776
Q ss_pred CCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEeCC-cC--hHHHHHHH--------------HHHHHHHHHHHHHH
Q 018303 194 KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VG--NGAAMKLV--------------VNMIMGSMMATFSE 256 (358)
Q Consensus 194 ~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~-~g--~~~~~k~~--------------~n~~~~~~~~~~~E 256 (358)
+..........+.+.+++..+.++.+|..-.++++...| .| .+-++|-+ .|.-...+..++.|
T Consensus 165 Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~E 244 (365)
T PTZ00345 165 DVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEE 244 (365)
T ss_pred HHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 665555566666777888889999999877777776666 33 23344433 35666677899999
Q ss_pred HHHHHHHcCC--CHHHHHHHHhhc----cccchhhhcc--ccccccCC--CC--C------CCchhhHHHHHHHHHHHHH
Q 018303 257 GLLHSEKVGL--DPNVLVEVVSQG----AISAPMYSLK--GPSMIESL--YP--T------AFPLKHQQKDLRLALGLAE 318 (358)
Q Consensus 257 a~~l~~~~G~--~~~~~~~~~~~~----~~~s~~~~~~--~~~~~~~~--~~--~------~~~~~~~~kd~~~~~~~a~ 318 (358)
+.+++++.|- ++++++.+...+ +..| .+++ +..+.++. .. . ...+..+......+.++++
T Consensus 245 m~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~ 322 (365)
T PTZ00345 245 MKLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLE 322 (365)
T ss_pred HHHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHH
Confidence 9999999974 888888765543 2223 2322 23333321 00 0 0122345666788999999
Q ss_pred hcCC--CchHHHHHHHHHH
Q 018303 319 SVSQ--STPIAAAANELYK 335 (358)
Q Consensus 319 ~~gi--~~p~~~a~~~~~~ 335 (358)
++++ ++|+++++++++.
T Consensus 323 ~~~i~~~~Pi~~~vy~il~ 341 (365)
T PTZ00345 323 SHDLKKEFPLFTVTYKIAF 341 (365)
T ss_pred HcCCCCCCCHHHHHHHHHh
Confidence 9999 8999999999984
No 78
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.74 E-value=2.7e-16 Score=145.19 Aligned_cols=256 Identities=21% Similarity=0.217 Sum_probs=168.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-----------cCCCHHHHhhcCCEEEEeeCChhh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-----------YQPSPDEVAASCDVTFAMLADPES 139 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-----------~~~~~~~~~~~aDivi~~vp~~~~ 139 (358)
|+|+|||+|.||+.+|..|+..|++|.+++|+++..+.+.+.|.. ...+..++ +.+|+|++++| +.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k-~~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVK-AYQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecc-ccc
Confidence 589999999999999999999999999999987777766665542 23455555 88999999996 678
Q ss_pred HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCe----EecCCCCC--CCCcCCCCceEEEec-CCHhH
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS----FLEAPVSG--SKKPAEDGQLIFLAA-GDKSL 212 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~-g~~~~ 212 (358)
++.++ +.+.+.+.++++||.+.++.. ..+.+.+.+....+. +..+-..+ .......+...+... +..+.
T Consensus 79 ~~~~~---~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 79 LPAAL---PSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred HHHHH---HHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 88888 778778888888888877643 334455555432211 11111111 111112233322211 12234
Q ss_pred HHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH--H
Q 018303 213 YNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGLDP--N 269 (358)
Q Consensus 213 ~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~---------------------~~~~~~Ea~~l~~~~G~~~--~ 269 (358)
.+.+.++|+..+..+....+.....|.|++.|...+. +..++.|...++++.|++. +
T Consensus 155 ~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~ 234 (304)
T PRK06522 155 AEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVE 234 (304)
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChH
Confidence 6778888888888877777788899999998864432 3467899999999998754 4
Q ss_pred HHHHHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303 270 VLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS 339 (358)
Q Consensus 270 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~ 339 (358)
.+.+.+...... .....++|.+ |...+ -+++.+ +++++++++++|+++|+++.+.++++....
T Consensus 235 ~~~~~~~~~~~~---~~~~~sSm~~-D~~~gr~tEid~i---~G~~v~~a~~~gv~~P~~~~l~~~~~~~~~ 299 (304)
T PRK06522 235 EVREYVRQVIQK---TAANTSSMLQ-DLEAGRPTEIDAI---VGYVLRRGRKHGIPTPLNDALYGLLKAKES 299 (304)
T ss_pred HHHHHHHHHhhc---cCCCCchHHH-HHHcCCCcccchh---ccHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 444443321100 0011123332 22112 233444 678999999999999999999999877654
No 79
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.74 E-value=1.5e-16 Score=144.97 Aligned_cols=194 Identities=15% Similarity=0.180 Sum_probs=141.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhh-----------HHhCC-------------CccCCCHHHHhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAAS 126 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~ 126 (358)
++|||||+|.||..+|..++..|++|++||++++..+. +.+.| +..++++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999999987655 22222 2356677 55799
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccC-CCCCEEEEccCCChhHHHHHHHHHHhc--CCeEecCCCCCCCCcCCCCceE
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGM-GPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLEAPVSGSKKPAEDGQLI 203 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l-~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~ 203 (358)
||+|+.|+|++.+++..+| ..+-+.. ++++++++.+++.+....+.....+++ +++|++. ++....-.++
T Consensus 85 ~d~ViEav~E~~~~K~~l~--~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P-----~~~~~lvElv 157 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIF--AELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNP-----VPVLPLVELV 157 (286)
T ss_pred CCEEEEecccCHHHHHHHH--HHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCC-----cccCceEEEe
Confidence 9999999999999999885 3444445 789999988777777654433333333 4455542 2211111333
Q ss_pred EEecCCHhHHHHHHHHHH-HhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc
Q 018303 204 FLAAGDKSLYNTVAPLLD-IMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS 281 (358)
Q Consensus 204 ~~~~g~~~~~~~v~~ll~-~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~ 281 (358)
....++++.++.+.+++. .+|+.++.+++ +| ++.|-+. ...++|++.++++...++++++.++..+.+.
T Consensus 158 ~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~nRi~---~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~ 228 (286)
T PRK07819 158 PTLVTSEATVARAEEFASDVLGKQVVRAQDRSG------FVVNALL---VPYLLSAIRMVESGFATAEDIDKAMVLGCAH 228 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCceEecCCCC------hHHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 334568999999999988 69999999988 77 4444443 3446699999888667899999998765443
No 80
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.73 E-value=1.9e-16 Score=145.41 Aligned_cols=187 Identities=17% Similarity=0.229 Sum_probs=135.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhh-----------HHhCC-------------CccCCCHHHHhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAAS 126 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~ 126 (358)
++|+|||+|.||..+|..++..|++|.+||++++..+. +.+.| ....++. +.+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence 58999999999999999999999999999999876542 22222 2233344 56899
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccCCCCCEEE-EccCCChhHHHHHHHHHHh----cCCeEecCCCCCCCCcCCCCc
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQ 201 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~ 201 (358)
||+||+|+|.+.+++..++ .++.+.++++++|+ |+|+..+. .+.+.+.. .+++++++|... +
T Consensus 84 aD~Vieav~e~~~~k~~v~--~~l~~~~~~~~il~s~tS~i~~~---~l~~~~~~~~r~~g~h~~~pp~~~--------~ 150 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLF--SELDRICKPSAILASNTSSISIT---RLASATQRPQQVIGMHFMNPPPIM--------K 150 (295)
T ss_pred CCEEEEcCccCHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCCcceEEEeccCCcccC--------c
Confidence 9999999999899888875 55666788998887 66666544 34444432 244555555432 2
Q ss_pred eEEEec---CCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 018303 202 LIFLAA---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ 277 (358)
Q Consensus 202 ~~~~~~---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 277 (358)
++.++. ++++.++.+.++++.+|+.++.+++ +| .++++++. ..++|+++++++...++++++..+..
T Consensus 151 lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-----~i~nri~~----~~~~ea~~~~~~gv~~~~~iD~~~~~ 221 (295)
T PLN02545 151 LVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-----FIVNRILM----PMINEAFYALYTGVASKEDIDTGMKL 221 (295)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-----HHHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 334443 4889999999999999999999988 56 23333333 34679999988877889999988776
Q ss_pred ccc
Q 018303 278 GAI 280 (358)
Q Consensus 278 ~~~ 280 (358)
+.+
T Consensus 222 g~g 224 (295)
T PLN02545 222 GTN 224 (295)
T ss_pred ccC
Confidence 543
No 81
>PRK07680 late competence protein ComER; Validated
Probab=99.73 E-value=3.1e-16 Score=142.41 Aligned_cols=195 Identities=16% Similarity=0.247 Sum_probs=135.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC----cEEEEcCCccchhhHHhC--CCccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~----~V~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~ 144 (358)
|+|+|||+|+||..+++.|.+.|+ +|.+|+|++++.+.+.+. ++....+..++++++|+|++++| +..+..++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence 479999999999999999998883 799999998877666553 56667788898999999999995 78899998
Q ss_pred cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEec--CCHhHHHHHHHHHHH
Q 018303 145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI 222 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~ 222 (358)
+++.+.++++++||+++.+. ..+.+.+.+....+.++.. .+.....+...+..+ .+++..+.++++|+.
T Consensus 80 ---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~ 150 (273)
T PRK07680 80 ---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLERLFSN 150 (273)
T ss_pred ---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHHHHHHc
Confidence 77777788899999998654 4556666654333334321 112223455544444 356778899999999
Q ss_pred hcCCeEEeCCcChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018303 223 MGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG 278 (358)
Q Consensus 223 ~g~~~~~~g~~g~~~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 278 (358)
+|. ++.+.+.-......+. ...+...++.++.++. .++.|+++++..+++...
T Consensus 151 ~G~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~ 205 (273)
T PRK07680 151 IST-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEM 205 (273)
T ss_pred CCC-EEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHH
Confidence 995 5555542111112222 2334444444444443 244899999999888875
No 82
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.72 E-value=6.3e-16 Score=143.12 Aligned_cols=256 Identities=18% Similarity=0.167 Sum_probs=169.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc--------------cCCCHHHHhhcCCEEEEe
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------------YQPSPDEVAASCDVTFAM 133 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~--------------~~~~~~~~~~~aDivi~~ 133 (358)
+..|+|+|||+|.||+.+|..|++.|++|.++.|++. +.....|.. ...+. +....+|+|++|
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vila 79 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVG 79 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence 4457999999999999999999999999999999753 334443321 11122 345679999999
Q ss_pred eCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcC----CeEecCCCCCCC--CcCCCCceEEE-e
Q 018303 134 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSK--KPAEDGQLIFL-A 206 (358)
Q Consensus 134 vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~--~~~~~~~~~~~-~ 206 (358)
++ ..++..++ +.+.+.+.++..++...+|.. ..+.+.+.+.... +.++++...+.. .....+...+- .
T Consensus 80 vK-~~~~~~~~---~~l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~ 154 (313)
T PRK06249 80 LK-TTANALLA---PLIPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYH 154 (313)
T ss_pred ec-CCChHhHH---HHHhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecC
Confidence 95 66777777 677777888888888877644 3445666664432 222222222211 11122333321 1
Q ss_pred cC-C-----HhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Q 018303 207 AG-D-----KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLL 259 (358)
Q Consensus 207 ~g-~-----~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~---------------------~~~~~~Ea~~ 259 (358)
.+ + .+..+.+..+|+..|..+....++....|.|++.|...+. +..++.|+..
T Consensus 155 ~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~ 234 (313)
T PRK06249 155 SGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQ 234 (313)
T ss_pred CCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHH
Confidence 22 2 3566778889999999988888888899999998864432 4567899999
Q ss_pred HHHHcCCCH--HHHHHHHhhccccchhhhccccccccCCCCCCC--chhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 018303 260 HSEKVGLDP--NVLVEVVSQGAISAPMYSLKGPSMIESLYPTAF--PLKHQQKDLRLALGLAESVSQSTPIAAAANELYK 335 (358)
Q Consensus 260 l~~~~G~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~ 335 (358)
++++.|++. +.+.+.+...... + ...++|.+ |...|. +++.+ .+.++++++++|+++|+++.++++++
T Consensus 235 va~a~Gi~~~~~~~~~~~~~~~~~-~---~~~sSM~q-D~~~gr~tEid~i---~G~vv~~a~~~Gi~~P~~~~l~~~l~ 306 (313)
T PRK06249 235 GAAACGHTLPEGYADHMLAVTERM-P---DYRPSMYH-DFEEGRPLELEAI---YANPLAAARAAGCAMPRVEMLYQALE 306 (313)
T ss_pred HHHhcCCCCChhHHHHHHHHhhcC-C---CCCChHHH-HHHCCCcccHHHH---hhHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999863 3233333221111 0 11244553 443333 35555 78999999999999999999999888
Q ss_pred HHHH
Q 018303 336 VAKS 339 (358)
Q Consensus 336 ~a~~ 339 (358)
...+
T Consensus 307 ~~e~ 310 (313)
T PRK06249 307 FLDR 310 (313)
T ss_pred HHHh
Confidence 7654
No 83
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=3.8e-16 Score=143.23 Aligned_cols=189 Identities=16% Similarity=0.209 Sum_probs=133.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------CC-------------CccCCCHHHHhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAAS 126 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~ 126 (358)
++|+|||+|.||..+|..++..|++|.+||++++..+...+ .| +...++++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 58999999999999999999999999999999877654321 12 34456664 4789
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccCCCCCEEE-EccCCChhHHHHHHHHHHhc----CCeEecCCCCCCCCcCCCCc
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKPAEDGQ 201 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~ 201 (358)
||+|++|+|...+.+..++ +++.+.++++++++ |+|+..+. .+.+.+... ++++++. ++....-.
T Consensus 84 aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p-----~~~~~~ve 153 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNP-----VPVMKLVE 153 (292)
T ss_pred CCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCC-----cccCceEE
Confidence 9999999998777766653 56777889999888 55554432 466655321 3445541 11111111
Q ss_pred eEEEecCCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 018303 202 LIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA 279 (358)
Q Consensus 202 ~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 279 (358)
.....+++++.++.+.++++.+|+.++++++ +| +++++++.. .++|++.+.++.-.++++++.++..+.
T Consensus 154 i~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~pg-----~i~nRl~~~----~~~ea~~~~~~g~~~~~~iD~~~~~g~ 223 (292)
T PRK07530 154 LIRGIATDEATFEAAKEFVTKLGKTITVAEDFPA-----FIVNRILLP----MINEAIYTLYEGVGSVEAIDTAMKLGA 223 (292)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcCC-----hHHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 1111346899999999999999999999988 54 444555433 456998888884458999999887554
No 84
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.71 E-value=4.2e-16 Score=144.37 Aligned_cols=257 Identities=12% Similarity=0.066 Sum_probs=177.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCC--------CcEEEEcCC-----ccchhhHHhC--------------CCccCCCHHHHh
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAG--------CDVTVWNRT-----KSKCDPLISL--------------GAKYQPSPDEVA 124 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g--------~~V~~~~~~-----~~~~~~~~~~--------------g~~~~~~~~~~~ 124 (358)
+|+|||+|++|+++|..|+..| ++|.+|.|+ .+..+.+.+. ++...+|+++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999999988 999999983 2222222211 133557889999
Q ss_pred hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhH-------HHHHHHHHHhcCCeEecCCCCCCCCcC
Q 018303 125 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-------SKLINGHIKATGASFLEAPVSGSKKPA 197 (358)
Q Consensus 125 ~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~-------~~~l~~~l~~~~~~~~~~~~~~~~~~~ 197 (358)
+++|+|++++| +..++.++ +++.+.+++++.+|+++-|-... .+.+.+.+ ...+.++..|.+..+...
T Consensus 81 ~~ADiIIlAVP-s~~i~~vl---~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A~Eva~ 155 (342)
T TIGR03376 81 KGADILVFVIP-HQFLEGIC---KQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLANEVAK 155 (342)
T ss_pred hcCCEEEEECC-hHHHHHHH---HHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchHHHHHc
Confidence 99999999997 78899988 78888888899999987663322 23444445 335667788887766555
Q ss_pred CCCceEEEecCC----HhHHHHHHHHHHHhcCCeEEeCC-cC--hHHHHHHH--------------HHHHHHHHHHHHHH
Q 018303 198 EDGQLIFLAAGD----KSLYNTVAPLLDIMGKSRFYLGD-VG--NGAAMKLV--------------VNMIMGSMMATFSE 256 (358)
Q Consensus 198 ~~~~~~~~~~g~----~~~~~~v~~ll~~~g~~~~~~g~-~g--~~~~~k~~--------------~n~~~~~~~~~~~E 256 (358)
.......+.+.+ .+..+.++.+|..-.++++...+ .| .+-++|-+ .|.-...+..++.|
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~E 235 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLE 235 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 555555556666 78888899998876666666665 33 23344433 25666677899999
Q ss_pred HHHHHHHcCCCHH--HHHHHHhhcc----ccchhhhc--ccccccc-CCC-C----C--CCchhhHHHHHHHHHHHHHhc
Q 018303 257 GLLHSEKVGLDPN--VLVEVVSQGA----ISAPMYSL--KGPSMIE-SLY-P----T--AFPLKHQQKDLRLALGLAESV 320 (358)
Q Consensus 257 a~~l~~~~G~~~~--~~~~~~~~~~----~~s~~~~~--~~~~~~~-~~~-~----~--~~~~~~~~kd~~~~~~~a~~~ 320 (358)
+.+++++.|.+++ +++.+..-+. ..| .++ .+..+.+ +.. . . ...+..+......+.++++++
T Consensus 236 m~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~ 313 (342)
T TIGR03376 236 MIKFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNK 313 (342)
T ss_pred HHHHHHHhCCCCCCCcccccchhhhhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHc
Confidence 9999999999777 7765544331 222 222 2233333 211 0 0 112233455578889999999
Q ss_pred CCC--chHHHHHHHHHH
Q 018303 321 SQS--TPIAAAANELYK 335 (358)
Q Consensus 321 gi~--~p~~~a~~~~~~ 335 (358)
+++ +|+++++++++.
T Consensus 314 ~i~~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 314 NKDDEFPLFEAVYQILY 330 (342)
T ss_pred CCCcCCCHHHHHHHHHh
Confidence 999 999999999884
No 85
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=7.1e-16 Score=142.78 Aligned_cols=193 Identities=15% Similarity=0.146 Sum_probs=136.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-----C--------------CccCCCHHHHhhcCCEEE
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----G--------------AKYQPSPDEVAASCDVTF 131 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-----g--------------~~~~~~~~~~~~~aDivi 131 (358)
++|+|||+|.||..+|..|+..|++|++||++++..+.+.+. + +...++..+++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 589999999999999999999999999999988776554321 1 234567888889999999
Q ss_pred EeeCChhhH-hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecC--
Q 018303 132 AMLADPESA-MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG-- 208 (358)
Q Consensus 132 ~~vp~~~~~-~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-- 208 (358)
+|+|...+. ..++ .++...++++++|+..+.+.+ ...+.+.+.. ...++....+..+.. ..+..++.+
T Consensus 85 ~av~~~~~~~~~v~---~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~-~~~~ig~h~~~p~~~---~~l~~i~~g~~ 155 (311)
T PRK06130 85 EAVPEKLELKRDVF---ARLDGLCDPDTIFATNTSGLP--ITAIAQAVTR-PERFVGTHFFTPADV---IPLVEVVRGDK 155 (311)
T ss_pred EeccCcHHHHHHHH---HHHHHhCCCCcEEEECCCCCC--HHHHHhhcCC-cccEEEEccCCCCcc---CceEEEeCCCC
Confidence 999876544 4455 555555666766654444333 3356666543 223444433332221 123334444
Q ss_pred -CHhHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc
Q 018303 209 -DKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS 281 (358)
Q Consensus 209 -~~~~~~~v~~ll~~~g~~~~~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~ 281 (358)
+++.++.+.++++.+|+.++.++. +|. +++|.+ ...++|++.++++.|++++++++++..+.+.
T Consensus 156 t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~nr~~----~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~ 222 (311)
T PRK06130 156 TSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IANRIQ----HALAREAISLLEKGVASAEDIDEVVKWSLGI 222 (311)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhcCCC
Confidence 689999999999999999999974 562 445553 3568899999999999999999999876554
No 86
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=1.2e-15 Score=139.55 Aligned_cols=193 Identities=13% Similarity=0.132 Sum_probs=136.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-------------------------CCCccCCCHHHHhh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------------LGAKYQPSPDEVAA 125 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-------------------------~g~~~~~~~~~~~~ 125 (358)
++|+|||+|.||..+|..++..|++|.+||++++..+...+ .++...++++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 58999999999999999999999999999999876544321 12345678888899
Q ss_pred cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEE
Q 018303 126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 205 (358)
Q Consensus 126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||+||+|+|...+.+..++ +++.+.++++++|++.+++.+. ..+.+.+.. .-.++..+.+..+. ..+++.+
T Consensus 84 ~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~~--~~~~~~~~~-~~r~vg~Hf~~p~~---~~~lvev 155 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLLP--SQFAEATGR-PEKFLALHFANEIW---KNNTAEI 155 (287)
T ss_pred CCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCCH--HHHHhhcCC-cccEEEEcCCCCCC---cCCeEEE
Confidence 99999999997766655543 5676778888888544443333 234444432 23456554444322 2234444
Q ss_pred e---cCCHhHHHHHHHHHHHhcCCeEEeC-C-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018303 206 A---AGDKSLYNTVAPLLDIMGKSRFYLG-D-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI 280 (358)
Q Consensus 206 ~---~g~~~~~~~v~~ll~~~g~~~~~~g-~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~ 280 (358)
+ ..+++.++.+.++++.+|+.++.+. + +| ++.|-+.. ..++|++.++++...++++++.++..+.+
T Consensus 156 v~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pg------fi~nRi~~---~~~~ea~~l~~~g~a~~~~iD~a~~~~~g 226 (287)
T PRK08293 156 MGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPG------YILNSLLV---PFLSAALALWAKGVADPETIDKTWMIATG 226 (287)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCC------HhHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhccC
Confidence 3 3488999999999999999998885 4 66 34343333 34579999988877899999999876544
No 87
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.69 E-value=3.6e-14 Score=126.89 Aligned_cols=198 Identities=13% Similarity=0.143 Sum_probs=135.5
Q ss_pred CeEEEEcCChh--------------------HHHHHHHHHHCCCcEEEEcCCccch-----hhHHhCCCccCCCHHHHhh
Q 018303 71 GRIGFLGMGIM--------------------GTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQPSPDEVAA 125 (358)
Q Consensus 71 ~~IgIIG~G~i--------------------G~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~ 125 (358)
|+|.|.|+|+. |..+|++|.+.|++|++|||++++. +.+.+.|+..+++..++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 57889999986 8999999999999999999987644 3467778888989999999
Q ss_pred cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHH-HH--hcCCeEe---cCCCCCCCCcCCC
Q 018303 126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH-IK--ATGASFL---EAPVSGSKKPAED 199 (358)
Q Consensus 126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~-l~--~~~~~~~---~~~~~~~~~~~~~ 199 (358)
++|+||+|+|.+.+++.++ ..+++.+++|+++||+|+.+|.......+. |+ +..+.+. .+.+.+.+..
T Consensus 81 ~ADVVIL~LPd~aaV~eVl---~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~--- 154 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIA---RTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQH--- 154 (341)
T ss_pred CCCEEEEecCCHHHHHHHH---HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCC---
Confidence 9999999999999999998 678889999999999999999876555544 33 2333333 2333333321
Q ss_pred CceEEEec--------CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHH
Q 018303 200 GQLIFLAA--------GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHS-EKVGLDPNV 270 (358)
Q Consensus 200 ~~~~~~~~--------g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~-~~~G~~~~~ 270 (358)
...++.+ .+++.++++.++.++.++.++.+...-......+. ..+.....+.+.+-...+ +-.|.+.+.
T Consensus 155 -~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~-s~vta~~~~gil~y~~~~t~i~~ap~~~ 232 (341)
T TIGR01724 155 -GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMG-SLVTAVALAGVLDYYYVGTQIINAPKEM 232 (341)
T ss_pred -ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 1111111 17899999999999999998877552112222222 222233333333444443 346666655
Q ss_pred HHHHHh
Q 018303 271 LVEVVS 276 (358)
Q Consensus 271 ~~~~~~ 276 (358)
+...+.
T Consensus 233 ~~~~~~ 238 (341)
T TIGR01724 233 IEKQIL 238 (341)
T ss_pred HHHHHH
Confidence 544333
No 88
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.69 E-value=1.2e-14 Score=134.25 Aligned_cols=175 Identities=17% Similarity=0.316 Sum_probs=129.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHhCCC--ccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGA--KYQPSPDEVAASCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~aDivi~~vp~~~~~~~~~ 144 (358)
..++|+|||+|.||..+++.|...|+ +|.+|||+++..+.+.+.|. ....+.+++++++|+||+|+| +..+..++
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-~~~~~~v~ 83 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-VGASGAVA 83 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-HHHHHHHH
Confidence 34689999999999999999999885 89999999887777666654 234577888899999999997 45667777
Q ss_pred cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCCCc-CC-------CCceEEEe---cCCHhH
Q 018303 145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSKKP-AE-------DGQLIFLA---AGDKSL 212 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~-~~-------~~~~~~~~---~g~~~~ 212 (358)
+++.+.++++.+|+++++......+.+.+.+. .++.+++. |+.+.+.. .. .+..++++ +++++.
T Consensus 84 ---~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~ 159 (307)
T PRK07502 84 ---AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAA 159 (307)
T ss_pred ---HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHH
Confidence 66777789999999998877665555555443 35677775 77764421 11 22233333 347888
Q ss_pred HHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH
Q 018303 213 YNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 248 (358)
Q Consensus 213 ~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~ 248 (358)
++.+.++++.+|.+++.+++..+.....++......
T Consensus 160 ~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~ 195 (307)
T PRK07502 160 VARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHL 195 (307)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHH
Confidence 999999999999999999887767666666554433
No 89
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.69 E-value=7.2e-15 Score=138.33 Aligned_cols=195 Identities=18% Similarity=0.227 Sum_probs=139.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc----cCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK----YQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
++|+|||+|.||.++|+.|++.|++|.+|+++++........+.. ..+++++++++||+||+|+| +..+..++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP-~~~~~~vl-- 77 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVP-VDATAALL-- 77 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCC-HHHHHHHH--
Confidence 379999999999999999999999999999887664433332222 23567788999999999998 56788888
Q ss_pred cccccc-cCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCC--------cCCCCceEEEec---CCHhHH
Q 018303 147 KHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKK--------PAEDGQLIFLAA---GDKSLY 213 (358)
Q Consensus 147 ~~~~~~-~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~---g~~~~~ 213 (358)
+++.+ .++++.+|.|+++.+....+.+.+.+ .....|++ +|+.+.+. ....+..++++. .+++.+
T Consensus 78 -~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~-~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~ 155 (359)
T PRK06545 78 -AELADLELKPGVIVTDVGSVKGAILAEAEALL-GDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAV 155 (359)
T ss_pred -HHHhhcCCCCCcEEEeCccccHHHHHHHHHhc-CCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHH
Confidence 77766 47899999999998887666665553 34567887 57776532 122344444544 378889
Q ss_pred HHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 018303 214 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ 277 (358)
Q Consensus 214 ~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 277 (358)
+.++++++.+|..++.+++..+.....+++..-.... +++ +...+.+.+...++...
T Consensus 156 ~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia-----~al--~~~~~~~~~~~~~la~~ 212 (359)
T PRK06545 156 AELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILA-----SSL--AARLAGEHPLALRLAAG 212 (359)
T ss_pred HHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHH-----HHH--HHhhccCchHHHhhhcc
Confidence 9999999999999999988776777766655544333 222 34445555555555443
No 90
>PLN02256 arogenate dehydrogenase
Probab=99.68 E-value=6.3e-15 Score=134.86 Aligned_cols=171 Identities=17% Similarity=0.181 Sum_probs=129.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHh-hcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~vp~~~~~~~~~~ 145 (358)
+..+++|+|||+|.||..+++.|.+.|++|.+|+++.. .+...+.|+....+.++++ .++|+|++|+| +..+..++
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e~~~~~aDvVilavp-~~~~~~vl- 109 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDDFCEEHPDVVLLCTS-ILSTEAVL- 109 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHHHhhCCCCEEEEecC-HHHHHHHH-
Confidence 45668999999999999999999999999999999863 2334445676667888876 46999999997 67888888
Q ss_pred ccccc-cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCc--CCCCceEEEec-------CCHhHHH
Q 018303 146 GKHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--AEDGQLIFLAA-------GDKSLYN 214 (358)
Q Consensus 146 ~~~~~-~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~-------g~~~~~~ 214 (358)
+++ ...++++++|+|+++++....+.+.+.+.. +..++. +|+++.+.. ...+...+... .+++..+
T Consensus 110 --~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 186 (304)
T PLN02256 110 --RSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCE 186 (304)
T ss_pred --HhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHH
Confidence 666 566899999999999887777777777643 445665 477766532 12233333322 2677889
Q ss_pred HHHHHHHHhcCCeEEeCCcChHHHHHHHH
Q 018303 215 TVAPLLDIMGKSRFYLGDVGNGAAMKLVV 243 (358)
Q Consensus 215 ~v~~ll~~~g~~~~~~g~~g~~~~~k~~~ 243 (358)
.+.++++.+|.+++.+.+..+...+..++
T Consensus 187 ~l~~l~~~lGa~v~~~~~eeHD~~vA~iS 215 (304)
T PLN02256 187 RFLDIFEEEGCRMVEMSCEEHDRYAAGSQ 215 (304)
T ss_pred HHHHHHHHCCCEEEEeCHHHHhHHHHhhh
Confidence 99999999999999999877666655443
No 91
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.67 E-value=2.6e-14 Score=128.52 Aligned_cols=172 Identities=20% Similarity=0.325 Sum_probs=131.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc--hhhHHhCCCccC--CCH-HHHhhcCCEEEEeeCChhhHhhhh
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAKYQ--PSP-DEVAASCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~--~~~~~~~g~~~~--~~~-~~~~~~aDivi~~vp~~~~~~~~~ 144 (358)
.++|+|+|+|.||+.+|+.+++.|+.|.+++++... .+...+.|+... .+. .+....+|+||++|| -..+..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavP-i~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVP-IEATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEecc-HHHHHHHH
Confidence 368999999999999999999999988776665543 333333444321 222 566778999999998 78999999
Q ss_pred cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCC--CcCCCCceEEEecC---CHhHHHHHHH
Q 018303 145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSK--KPAEDGQLIFLAAG---DKSLYNTVAP 218 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~g---~~~~~~~v~~ 218 (358)
+++.+.+++|++|+|+++.+....+++.+.+.+.. .+++. |++|++ .....+..++++.. +.+.++.+.+
T Consensus 82 ---~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~ 157 (279)
T COG0287 82 ---KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKR 157 (279)
T ss_pred ---HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHH
Confidence 88888999999999999999988888888886656 77764 777773 33334555555543 4568899999
Q ss_pred HHHHhcCCeEEeCCcChHHHHHHHHHHH
Q 018303 219 LLDIMGKSRFYLGDVGNGAAMKLVVNMI 246 (358)
Q Consensus 219 ll~~~g~~~~~~g~~g~~~~~k~~~n~~ 246 (358)
+++.+|.+++.+.+..+......++.+-
T Consensus 158 ~~~~~ga~~v~~~~eeHD~~~a~vshLp 185 (279)
T COG0287 158 LWEALGARLVEMDAEEHDRVMAAVSHLP 185 (279)
T ss_pred HHHHcCCEEEEcChHHHhHHHHHHHHHH
Confidence 9999999999998877677766665443
No 92
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.67 E-value=6.2e-15 Score=134.53 Aligned_cols=193 Identities=17% Similarity=0.167 Sum_probs=134.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhh-----------HHhCC-------------CccCCCHHHHhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAAS 126 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~ 126 (358)
++|+|||+|.||..+|..++..|++|+++|++++..+. +.+.| +...++.++ +++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence 48999999999999999999999999999999887642 22222 233556654 789
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEE-
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL- 205 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 205 (358)
||+|++|+|....++..++ +++.+.++++++++..+++.+. ..+.+.+... -.++....+...+... .. .+.
T Consensus 83 aDlVi~av~e~~~~k~~~~--~~l~~~~~~~~il~s~ts~~~~--~~la~~~~~~-~r~ig~h~~~P~~~~~-~v-ev~~ 155 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIF--AQLDEIAKPEAILATNTSSLSI--TELAAATKRP-DKVIGMHFFNPVPVMK-LV-EIIR 155 (282)
T ss_pred CCeeeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHHhhCCC-cceEEeeccCCcccCc-cE-EEeC
Confidence 9999999998777774443 6677778889888544333332 3666666432 2344443333222111 11 122
Q ss_pred -ecCCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018303 206 -AAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI 280 (358)
Q Consensus 206 -~~g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~ 280 (358)
.+.+++..+.+.++++.+|+.++.+++ +| .+.|-+. ...++|+..+.++.-.++++++..+..+.+
T Consensus 156 g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g------~i~~Ri~---~~~~~ea~~~~~~gv~~~~diD~~~~~g~g 223 (282)
T PRK05808 156 GLATSDATHEAVEALAKKIGKTPVEVKNAPG------FVVNRIL---IPMINEAIFVLAEGVATAEDIDEGMKLGCN 223 (282)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEecCccC------hHHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 234899999999999999999999987 55 3434333 344679999988866789999998876543
No 93
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.67 E-value=1.7e-15 Score=138.85 Aligned_cols=189 Identities=17% Similarity=0.167 Sum_probs=131.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh--------------CC-------------CccCCCHHHH
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--------------LG-------------AKYQPSPDEV 123 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--------------~g-------------~~~~~~~~~~ 123 (358)
++|+|||+|.||..+|..++..|++|++||++++..+...+ .+ +...++. +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 48999999999999999999999999999999877653211 11 1234455 56
Q ss_pred hhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc----CCeEec-CCCCCCCCcCC
Q 018303 124 AASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLE-APVSGSKKPAE 198 (358)
Q Consensus 124 ~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~-~~~~~~~~~~~ 198 (358)
+++||+|++|+|...+.+..++ +++.+.+++++++++.+++. ....+.+.+... ++++++ +++....
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~v---- 154 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLI---- 154 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccE----
Confidence 7899999999997776555553 55666788889888555543 344566666432 334444 2222211
Q ss_pred CCceEEEec--CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303 199 DGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 276 (358)
Q Consensus 199 ~~~~~~~~~--g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 276 (358)
-++.+ .+++.++.+.++++.+|+.++.+++.+.....++..| .++|++.+.++.-.++++++.++.
T Consensus 155 ----Ev~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~a~~~~iD~~~~ 222 (291)
T PRK06035 155 ----EVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGIATIKDIDEMCK 222 (291)
T ss_pred ----EEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCCCCHHHHHHHHh
Confidence 11111 2789999999999999999999998443444444433 355888888774468999999987
Q ss_pred hccc
Q 018303 277 QGAI 280 (358)
Q Consensus 277 ~~~~ 280 (358)
.+.+
T Consensus 223 ~~~g 226 (291)
T PRK06035 223 LAFG 226 (291)
T ss_pred hcCC
Confidence 6543
No 94
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.67 E-value=6.3e-15 Score=132.66 Aligned_cols=245 Identities=17% Similarity=0.172 Sum_probs=156.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC----CcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g----~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
.|+|+|||+|+||.++++.|.+.+ .+|++++|+.++. +.....+..++++++|+||+|+| +..++.++
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl- 74 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL- 74 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 368999999999999999999876 2489999876542 23345678888899999999995 88999999
Q ss_pred ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEec--CCHhHHHHHHHHHHHh
Q 018303 146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDIM 223 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~~ 223 (358)
+++.+.++++ .+|.+..+-. .+.+.+.+......+--.|. .+.....+...+... .+++..+.++.+|+.+
T Consensus 75 --~~i~~~l~~~-~iIS~~aGi~--~~~l~~~~~~~~~vvr~mPn--~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~ 147 (260)
T PTZ00431 75 --LEIKPYLGSK-LLISICGGLN--LKTLEEMVGVEAKIVRVMPN--TPSLVGQGSLVFCANNNVDSTDKKKVIDIFSAC 147 (260)
T ss_pred --HHHHhhccCC-EEEEEeCCcc--HHHHHHHcCCCCeEEEECCC--chhHhcceeEEEEeCCCCCHHHHHHHHHHHHhC
Confidence 7777666654 5554444333 23344444322111111121 222233343333332 2567788999999999
Q ss_pred cCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc-cchhhhc--cccccccCCC-
Q 018303 224 GKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSL--KGPSMIESLY- 297 (358)
Q Consensus 224 g~~~~~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~-~s~~~~~--~~~~~~~~~~- 297 (358)
|..... .+ .....+.--....+.+.++.++.++. .+.|++.++..+++.++.. ...++.. ..|..+.+..
T Consensus 148 G~~~~v-~E~~~d~~ta~~gsgPA~~~~~~~al~~~~---v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~ 223 (260)
T PTZ00431 148 GIIQEI-KEKDMDIATAISGCGPAYVFLFIESLIDAG---VKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVC 223 (260)
T ss_pred CcEEEE-ChHHcchhhhhcCCHHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCC
Confidence 986644 44 22222222234555555555555554 8899999999999998643 3333332 2333333333
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018303 298 PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 340 (358)
Q Consensus 298 ~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~ 340 (358)
+||.+...+ ++..++.|+.--+.+++.+..+++.+.
T Consensus 224 spgG~T~~g-------l~~le~~g~~~~~~~a~~aa~~r~~~l 259 (260)
T PTZ00431 224 SPGGITIVG-------LYTLEKHAFKYTVMDAVESACQKSKSM 259 (260)
T ss_pred CCChHHHHH-------HHHHHHCChHHHHHHHHHHHHHHHHhc
Confidence 676654443 556678999999999999999888764
No 95
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.66 E-value=1.1e-14 Score=133.53 Aligned_cols=257 Identities=19% Similarity=0.208 Sum_probs=177.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc------------CCCHHHHhhcCCEEEEeeCChh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY------------QPSPDEVAASCDVTFAMLADPE 138 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~------------~~~~~~~~~~aDivi~~vp~~~ 138 (358)
|||.|+|+|.||+.++..|+..|++|+++.|++. .+.+.+.|+.. .....+....+|+|++++ ++.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v-Ka~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV-KAY 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe-ccc
Confidence 5899999999999999999999999999999765 67776654321 112234456899999999 899
Q ss_pred hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc----CCeEecCCCC--CCCCcCCCCceEEE--ecCCH
Q 018303 139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVS--GSKKPAEDGQLIFL--AAGDK 210 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~--~~~~~~~~~~~~~~--~~g~~ 210 (358)
+++.++ +.+.+.+++.+.|+-+-+|....+ .+.+..... |+...++--- +.......+...+- .++.+
T Consensus 79 q~~~al---~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 79 QLEEAL---PSLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cHHHHH---HHhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 999999 899999999999998888777665 677766654 1111111111 11111122232221 12244
Q ss_pred hHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcC--CC
Q 018303 211 SLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVG--LD 267 (358)
Q Consensus 211 ~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~---------------------~~~~~~Ea~~l~~~~G--~~ 267 (358)
+..+.+.++|+..+..+.+..++-...|.|++.|...+. +...+.|...++.+.| ++
T Consensus 155 ~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~ 234 (307)
T COG1893 155 ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELP 234 (307)
T ss_pred HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 678888888999999998888888899999999876552 4568899999999999 45
Q ss_pred HHHHHHHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018303 268 PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 340 (358)
Q Consensus 268 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~ 340 (358)
.+.+.+......... ....++|.+ |...+ -+++.. .+.+++.++++|+++|+++.++++++.....
T Consensus 235 ~~~~~~v~~~~~~~~---~~~~sSM~q-Dl~~gr~tEid~i---~G~vv~~a~~~gi~~P~~~~L~~lvk~~e~~ 302 (307)
T COG1893 235 EEVVERVLAVIRATD---AENYSSMLQ-DLEKGRPTEIDAI---NGAVVRLAKKHGLATPVNDTLYALLKAKEAE 302 (307)
T ss_pred HHHHHHHHHHHHhcc---cccCchHHH-HHHcCCcccHHHH---hhHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 533333333211010 011223332 22122 234444 7889999999999999999999999988764
No 96
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.65 E-value=1.7e-14 Score=132.86 Aligned_cols=258 Identities=15% Similarity=0.067 Sum_probs=166.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCccC-----------CCHHHHhhcCCEEEEeeCChh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQ-----------PSPDEVAASCDVTFAMLADPE 138 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~-----------~~~~~~~~~aDivi~~vp~~~ 138 (358)
|+|+|||+|.||+.+|..|++.|++|++++|+.++.+.+.+. |+... ....+....+|+|++++ +..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v-K~~ 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC-KAY 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC-CHH
Confidence 689999999999999999999999999999987666656543 32110 11112235789999999 889
Q ss_pred hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcC----CeEecCCCCCCCCcCCCCceEEEecC-CHhHH
Q 018303 139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKKPAEDGQLIFLAAG-DKSLY 213 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~ 213 (358)
++...+ +.+.+.+.+++.++-+-+|-... +.+.+.+.+.. +.++++...+.-.....+...+..+. +.+..
T Consensus 82 ~~~~al---~~l~~~l~~~t~vv~lQNGv~~~-e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~~~ 157 (305)
T PRK05708 82 DAEPAV---ASLAHRLAPGAELLLLQNGLGSQ-DAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNPTA 157 (305)
T ss_pred hHHHHH---HHHHhhCCCCCEEEEEeCCCCCH-HHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCcch
Confidence 999998 88888899999999887775533 35555554332 11222211111111111111122332 33445
Q ss_pred HHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHcCCCH--HHHHH
Q 018303 214 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS------------------MMATFSEGLLHSEKVGLDP--NVLVE 273 (358)
Q Consensus 214 ~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~------------------~~~~~~Ea~~l~~~~G~~~--~~~~~ 273 (358)
+.+.++|...|..+....++....|.|++.|...+. +..++.|...++++.|++. +.+.+
T Consensus 158 ~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~~ 237 (305)
T PRK05708 158 PAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLHE 237 (305)
T ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHHH
Confidence 677788888888777777788899999998864442 3467889999999999753 22333
Q ss_pred HHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018303 274 VVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 340 (358)
Q Consensus 274 ~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~ 340 (358)
.+...... .....++|.+ |...| -+++.+ .+.++++++++|+++|+++.+.++++....+
T Consensus 238 ~~~~~~~~---~~~~~sSM~q-D~~~gR~tEid~i---~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~ 299 (305)
T PRK05708 238 EVQRVIQA---TAANYSSMYQ-DVRAGRRTEISYL---LGYACRAADRHGLPLPRLQHLQQRLVAHLRA 299 (305)
T ss_pred HHHHHHHh---ccCCCcHHHH-HHHcCCceeehhh---hhHHHHHHHHcCCCCchHHHHHHHHHHHHHh
Confidence 32211000 0011223332 22222 234444 7889999999999999999999888776654
No 97
>PLN02712 arogenate dehydrogenase
Probab=99.63 E-value=3.3e-14 Score=142.80 Aligned_cols=167 Identities=19% Similarity=0.246 Sum_probs=123.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhh-cCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~vp~~~~~~~~~~ 145 (358)
+..+++|||||+|.||..+|+.|.+.|++|.+|||+... +...+.|+....++++++. .+|+|++|+| +..+..++
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~vi- 442 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKVL- 442 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHHH-
Confidence 567789999999999999999999999999999998543 4444567766778888876 5899999998 67889988
Q ss_pred ccccccc-cCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCcCCCC---ceE----EEecCCH---hHH
Q 018303 146 GKHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPAEDG---QLI----FLAAGDK---SLY 213 (358)
Q Consensus 146 ~~~~~~~-~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~---~~~----~~~~g~~---~~~ 213 (358)
.++.. .+++|++|+|+++++....+.+.+.+. .+..++ .+|+++.+... .| ... .+++++. +..
T Consensus 443 --~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~-~~~~~v~~HPm~G~e~~~-~G~~~~~~lf~~~~v~~~~~~~~~~ 518 (667)
T PLN02712 443 --KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP-QDFDILCTHPMFGPESGK-NGWNNLAFVFDKVRIGSDDRRVSRC 518 (667)
T ss_pred --HHHHHhcCCCCcEEEECCCccHHHHHHHHHhcc-CCCceEeeCCCCCccccc-cchhhhhhhccCcEeCCCcchHHHH
Confidence 55543 588999999999998666656665554 356677 67888876431 11 111 1223433 344
Q ss_pred HHHHHHHHHhcCCeEEeCCcChHHHHH
Q 018303 214 NTVAPLLDIMGKSRFYLGDVGNGAAMK 240 (358)
Q Consensus 214 ~~v~~ll~~~g~~~~~~g~~g~~~~~k 240 (358)
+.+..+++.+|.+++.+....+...+.
T Consensus 519 ~~l~~l~~~lGa~vv~ms~eeHD~~~A 545 (667)
T PLN02712 519 DSFLDIFAREGCRMVEMSCAEHDWHAA 545 (667)
T ss_pred HHHHHHHHHcCCEEEEeCHHHHHHHHH
Confidence 556689999999999988877564443
No 98
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.63 E-value=1.3e-14 Score=131.82 Aligned_cols=247 Identities=12% Similarity=0.138 Sum_probs=156.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC----CcEEEEcCCcc-chhhHHhC--CCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS-KCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDV 143 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g----~~V~~~~~~~~-~~~~~~~~--g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~ 143 (358)
++|+|||+|+||.++++.|...| ++|.+|+|+.+ +.+.+... +.....+..++++++|+||+|+| +..+..+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 58999999999999999999888 78999998653 33333332 23445678888999999999997 7888888
Q ss_pred hcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCcCCCCceEEEecC--CHhHHHHHHHHH
Q 018303 144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLL 220 (358)
Q Consensus 144 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll 220 (358)
+ +++.+.++++++||.+..|-.. +.+.+.+... .++. .|.. +.....+...+..+. +++..+.++.+|
T Consensus 81 l---~~l~~~l~~~~~ivS~~aGi~~--~~l~~~~~~~--~vvR~MPN~--~~~~g~g~t~~~~~~~~~~~~~~~v~~l~ 151 (277)
T PRK06928 81 L---KDCAPVLTPDRHVVSIAAGVSL--DDLLEITPGL--QVSRLIPSL--TSAVGVGTSLVAHAETVNEANKSRLEETL 151 (277)
T ss_pred H---HHHHhhcCCCCEEEEECCCCCH--HHHHHHcCCC--CEEEEeCcc--HHHHhhhcEEEecCCCCCHHHHHHHHHHH
Confidence 8 7777778888899988776444 3576666421 2222 2322 122233433333332 567788999999
Q ss_pred HHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhcccc-chhhh--cccccccc
Q 018303 221 DIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKV-GLDPNVLVEVVSQGAIS-APMYS--LKGPSMIE 294 (358)
Q Consensus 221 ~~~g~~~~~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~-G~~~~~~~~~~~~~~~~-s~~~~--~~~~~~~~ 294 (358)
+.+|..... .+ .....++--....+.+.++.++.++ +.+. |++.++..+++.++... ..++. ...|..+.
T Consensus 152 ~~~G~~~~v-~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~~p~~l~ 227 (277)
T PRK06928 152 SHFSHVMTI-REENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGTI 227 (277)
T ss_pred HhCCCEEEE-chhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 999986643 33 2212222222334444444444444 3676 79999999999976432 33332 13344444
Q ss_pred CCC-CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018303 295 SLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS 339 (358)
Q Consensus 295 ~~~-~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~ 339 (358)
+.. +||.+...+ ++..++ |++--+.+++.+..++...
T Consensus 228 ~~v~spgGtT~~g-------l~~le~-~~~~~~~~~~~~a~~r~~~ 265 (277)
T PRK06928 228 ERVATKGGITAEG-------AEVIQA-QLPQFFDELLDRTQKKYAS 265 (277)
T ss_pred HhCCCCChHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 343 566654443 334444 7777777777777776665
No 99
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.62 E-value=2.1e-14 Score=128.45 Aligned_cols=197 Identities=17% Similarity=0.194 Sum_probs=131.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC---c-EEEEcCC-ccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhh
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGC---D-VTVWNRT-KSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMD 142 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~---~-V~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~ 142 (358)
..+||+|||+|+||.+++..+...|. + +.+++|+ +++.+.+.+ .++..+.+.+++++++|+|++++| +...+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp-~~~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMP-PSAHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecC-HHHHHH
Confidence 34689999999999999999988763 3 6778874 566666554 366667788899999999999997 667788
Q ss_pred hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEe--cCCHhHHHHHHHHH
Q 018303 143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA--AGDKSLYNTVAPLL 220 (358)
Q Consensus 143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~v~~ll 220 (358)
++ +++.+.++ +++||+++.+-... .+.+.+..........|.+.. ....+...+.. ..+++..+.++.+|
T Consensus 82 v~---~~l~~~~~-~~~vis~~~gi~~~--~l~~~~~~~~~v~r~~Pn~a~--~v~~g~~~~~~~~~~~~~~~~~v~~lf 153 (245)
T PRK07634 82 LL---AELSPLLS-NQLVVTVAAGIGPS--YLEERLPKGTPVAWIMPNTAA--EIGKSISLYTMGQSVNETHKETLQLIL 153 (245)
T ss_pred HH---HHHHhhcc-CCEEEEECCCCCHH--HHHHHcCCCCeEEEECCcHHH--HHhcCCeEEeeCCCCCHHHHHHHHHHH
Confidence 87 66655554 67899887665443 466666432222234454332 22223222222 34788889999999
Q ss_pred HHhcCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018303 221 DIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG 278 (358)
Q Consensus 221 ~~~g~~~~~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 278 (358)
+.+|..++ +.+ .....+.--....+...++.++.++ +.+.|+++++..+++.+.
T Consensus 154 ~~~G~~~~-~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~Gl~~~~a~~~~~~~ 209 (245)
T PRK07634 154 KGIGTSQL-CTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYGVDEETAKHLVIQM 209 (245)
T ss_pred HhCCCEEE-ECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHH
Confidence 99998885 444 2222222223334444454444444 588999999999988875
No 100
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.62 E-value=1e-14 Score=123.13 Aligned_cols=168 Identities=21% Similarity=0.244 Sum_probs=115.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhC-C-CccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISL-G-AKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~-g-~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
+|+|+|+|+|+||..+|++|...||+|++-+|+.++ .+...+. + .....+++++.+.+|+|++++| ......++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP-~~a~~~v~-- 77 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVP-FEAIPDVL-- 77 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEecc-HHHHHhHH--
Confidence 378999999999999999999999999998665443 3333221 1 1224578899999999999998 56778887
Q ss_pred cccccccCCCCCEEEEccCCC---------------hhHHHHHHHHHHhcCC----eEecCCCCCCCCcCCCCceEEEec
Q 018303 147 KHGAASGMGPGKGYVDVSTVD---------------GDTSKLINGHIKATGA----SFLEAPVSGSKKPAEDGQLIFLAA 207 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~~---------------~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 207 (358)
+++...+. |++|||++..- ....+.+.+.+++..+ +-+.+..+...........+++++
T Consensus 78 -~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vag 155 (211)
T COG2085 78 -AELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAG 155 (211)
T ss_pred -HHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEec
Confidence 77777765 99999997741 1123344444443311 111222222222222345567788
Q ss_pred CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH
Q 018303 208 GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV 242 (358)
Q Consensus 208 g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~ 242 (358)
+|+++.+.+.++.+.+|+.++.+|+...+..+.-.
T Consensus 156 DD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~~ 190 (211)
T COG2085 156 DDAEAKAVVAELAEDIGFRPLDAGPLENARILEPG 190 (211)
T ss_pred CcHHHHHHHHHHHHhcCcceeeccccccccccccc
Confidence 89999999999999999999999996545444333
No 101
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.61 E-value=5.9e-14 Score=128.49 Aligned_cols=196 Identities=16% Similarity=0.160 Sum_probs=128.5
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch-hhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
.+.+++|||||+|+||.++|+.|+..|++|.+++++..+. +...+.|+... +..+++++||+|++++|.. ....++
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~-~~~~V~- 90 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDE-VQAEVY- 90 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHH-HHHHHH-
Confidence 5677899999999999999999999999999887764433 33344566654 8999999999999999854 457777
Q ss_pred ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCC-----cCCCCceEEE-ecCC--HhHHHHH
Q 018303 146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKK-----PAEDGQLIFL-AAGD--KSLYNTV 216 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~-~~g~--~~~~~~v 216 (358)
++++++.+++|++|+-+ .|..... +. .....++.++- +|...... ....|...++ +..+ .++.+.+
T Consensus 91 -~~~I~~~Lk~g~iL~~a-~G~~i~~--~~-~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a 165 (330)
T PRK05479 91 -EEEIEPNLKEGAALAFA-HGFNIHF--GQ-IVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLA 165 (330)
T ss_pred -HHHHHhcCCCCCEEEEC-CCCChhh--ce-eccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHH
Confidence 46688889999988544 4433222 11 11122333332 23322220 0233444444 4444 7888999
Q ss_pred HHHHHHhcCCeE-----EeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018303 217 APLLDIMGKSRF-----YLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLV 272 (358)
Q Consensus 217 ~~ll~~~g~~~~-----~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 272 (358)
..+++++|.... .+.+ ..+...-. ...+.+.+..++..++..+.+.|.+|+.++
T Consensus 166 ~~l~~aiG~~~~g~~~ttf~~e~~~dl~ge--q~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay 225 (330)
T PRK05479 166 LAYAKGIGGTRAGVIETTFKEETETDLFGE--QAVLCGGLTELIKAGFETLVEAGYQPEMAY 225 (330)
T ss_pred HHHHHHcCCCccceeeeeecccccccchhh--HHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999998753 2222 11111111 334555666777788888899999998765
No 102
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.57 E-value=7.5e-14 Score=122.51 Aligned_cols=169 Identities=17% Similarity=0.204 Sum_probs=117.1
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------CC---ccCCCHHHHhhcCCEEEEeeCChh
Q 018303 71 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------GA---KYQPSPDEVAASCDVTFAMLADPE 138 (358)
Q Consensus 71 ~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------g~---~~~~~~~~~~~~aDivi~~vp~~~ 138 (358)
|+|+||| +|+||+.+++.|.+.|++|.+++|++++.+.+.+. +. ....+..+.++++|+||+++| +.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp-~~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVP-WD 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECC-HH
Confidence 5899997 89999999999999999999999998776654431 21 112366788899999999996 77
Q ss_pred hHhhhhcccccccccCCCCCEEEEccCCChhH---------------HHHHHHHHHhcCCeEecC-C-----CCCCCCcC
Q 018303 139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDT---------------SKLINGHIKATGASFLEA-P-----VSGSKKPA 197 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~---------------~~~l~~~l~~~~~~~~~~-~-----~~~~~~~~ 197 (358)
....++ +++...+. +++||+++.+...+ .+.+.+.+.. +..++.+ + +... ...
T Consensus 80 ~~~~~l---~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~-~~~ 153 (219)
T TIGR01915 80 HVLKTL---ESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQD-VDD 153 (219)
T ss_pred HHHHHH---HHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcC-CCC
Confidence 788887 55544454 58999997775431 1345555532 1233332 1 1222 112
Q ss_pred CCCceEEEecCCHhHHHHHHHHHHHh-cCCeEEeCCcChHHHHHHHHHHH
Q 018303 198 EDGQLIFLAAGDKSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVNMI 246 (358)
Q Consensus 198 ~~~~~~~~~~g~~~~~~~v~~ll~~~-g~~~~~~g~~g~~~~~k~~~n~~ 246 (358)
..+...+++++++++.+.+..+.+.+ |+.++++|+...+..+.-...++
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~~~~l~ 203 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVESLTPLL 203 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHhHHHHH
Confidence 22344567777888999999999999 99999999977555554443333
No 103
>PLN02712 arogenate dehydrogenase
Probab=99.57 E-value=2.8e-13 Score=136.18 Aligned_cols=171 Identities=16% Similarity=0.207 Sum_probs=125.2
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHh-hcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~vp~~~~~~~~~~ 145 (358)
+.+.++|||||+|.||+.+|+.|.+.|++|.+|+++... +...+.|+....++++++ +++|+|++|+| +..+..++
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP-~~~~~~vl- 125 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTS-IISTENVL- 125 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCC-HHHHHHHH-
Confidence 455679999999999999999999999999999998443 444556777777888866 56999999998 67899998
Q ss_pred cccccc-ccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCc--CCCCceEEEe----cCCH---hHHH
Q 018303 146 GKHGAA-SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--AEDGQLIFLA----AGDK---SLYN 214 (358)
Q Consensus 146 ~~~~~~-~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~----~g~~---~~~~ 214 (358)
.++. ..++++++|+|+++......+.+.+.+.. +..++. +|++|.+.. ...+...++. +.++ +..+
T Consensus 126 --~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~-~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 202 (667)
T PLN02712 126 --KSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE-DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCK 202 (667)
T ss_pred --HhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC-CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHH
Confidence 6654 56899999999998887666666666643 445665 588877632 1122223333 2222 3456
Q ss_pred HHHHHHHHhcCCeEEeCCcChHHHHHHHH
Q 018303 215 TVAPLLDIMGKSRFYLGDVGNGAAMKLVV 243 (358)
Q Consensus 215 ~v~~ll~~~g~~~~~~g~~g~~~~~k~~~ 243 (358)
.+.++++.+|.+++.+....+......++
T Consensus 203 ~l~~l~~~lGa~v~~ms~eeHD~~~A~vs 231 (667)
T PLN02712 203 SFLEVFEREGCKMVEMSCTEHDKYAAESQ 231 (667)
T ss_pred HHHHHHHHcCCEEEEeCHHHHHHHHHHHH
Confidence 77799999999999998877565555544
No 104
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.56 E-value=2.3e-13 Score=123.01 Aligned_cols=193 Identities=14% Similarity=0.176 Sum_probs=139.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHH-----------hC-------------CCccCCCHHHHhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAAS 126 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~~ 126 (358)
++|+|||+|.||..+|..++..|++|.++|++++..+... +. .+....++. .+++
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~ 82 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKD 82 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhcc
Confidence 5899999999999999999998899999999966543321 11 133344444 6789
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEe
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA 206 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (358)
||+||.++|...++++-+| .++-...++++++-..+++-+. ..+.+.+. +.-.++..+.|..++.. +++-++
T Consensus 83 ~DlVIEAv~E~levK~~vf--~~l~~~~~~~aIlASNTSsl~i--t~ia~~~~-rper~iG~HFfNP~~~m---~LVEvI 154 (307)
T COG1250 83 ADLVIEAVVEDLELKKQVF--AELEALAKPDAILASNTSSLSI--TELAEALK-RPERFIGLHFFNPVPLM---PLVEVI 154 (307)
T ss_pred CCEEEEeccccHHHHHHHH--HHHHhhcCCCcEEeeccCCCCH--HHHHHHhC-CchhEEEEeccCCCCcc---eeEEEe
Confidence 9999999999999998775 6666677888888744443333 35666663 33345555555544332 233333
Q ss_pred cC---CHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc
Q 018303 207 AG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS 281 (358)
Q Consensus 207 ~g---~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~ 281 (358)
.| +++.++.+.++.+.+|+.++...+ +| ++.|-+.... +.|+..+.++...++++++.++..+.+.
T Consensus 155 ~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG------Fi~NRil~~~---~~eA~~l~~eGva~~e~ID~~~~~~~G~ 224 (307)
T COG1250 155 RGEKTSDETVERVVEFAKKIGKTPVVVKDVPG------FIVNRLLAAL---LNEAIRLLEEGVATPEEIDAAMRQGLGL 224 (307)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc------eehHhHHHHH---HHHHHHHHHhCCCCHHHHHHHHHhccCC
Confidence 33 789999999999999988877677 77 5555554443 5699988888889999999999986544
No 105
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.53 E-value=4.8e-13 Score=120.74 Aligned_cols=198 Identities=17% Similarity=0.142 Sum_probs=124.6
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
.+.+++|||||+|+||+++|++|+.+|++|+++++.....+.....|... .+++|+++.||+|++++|+ +++++++
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd-~~t~~V~-- 88 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPD-EQQAHVY-- 88 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCC-hHHHHHH--
Confidence 67889999999999999999999999999999987654444444556655 4899999999999999997 5668888
Q ss_pred cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCc-----CCCCceEEEec--C-CHhHHHHHH
Q 018303 147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKP-----AEDGQLIFLAA--G-DKSLYNTVA 217 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~--g-~~~~~~~v~ 217 (358)
++++++.|++|++++-. .+.-+... ...+..++.++ -+|--.+... ...|.+.++.- + +..+.+.+-
T Consensus 89 ~~eil~~MK~GaiL~f~-hgfni~~~---~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~al 164 (335)
T PRK13403 89 KAEVEENLREGQMLLFS-HGFNIHFG---QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVAL 164 (335)
T ss_pred HHHHHhcCCCCCEEEEC-CCcceecC---ceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHH
Confidence 57799999999987643 33322111 11112233222 1222111111 11233333321 1 345677778
Q ss_pred HHHHHhcCCe--EEeCCcChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018303 218 PLLDIMGKSR--FYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLV 272 (358)
Q Consensus 218 ~ll~~~g~~~--~~~g~~g~~~~~k~~--~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 272 (358)
....++|..- +.-.......-..+. ...+.+.+..++.-.+..+.+.|.+|+.++
T Consensus 165 a~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ay 223 (335)
T PRK13403 165 AYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAY 223 (335)
T ss_pred HHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 8888888762 222222212222222 224455555666666677789999998665
No 106
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.52 E-value=1.4e-12 Score=121.82 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=118.8
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHH-CCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303 70 PGRIGFLGM-GIMGTPMAQNLLK-AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 147 (358)
Q Consensus 70 ~~~IgIIG~-G~iG~~~a~~l~~-~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~ 147 (358)
.++|+|||+ |.||+.+|+.|++ .|++|+++|++.+ ...++.+.+++||+||+|+| ...+..++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavP-v~~~~~~l--- 68 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAP-IRHTAALI--- 68 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCC-HHHHHHHH---
Confidence 469999999 9999999999986 5889999998521 12467788999999999998 77888888
Q ss_pred cccccc---CCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCc-CCCCceEEEecC-CHhHHHHHHHHHH
Q 018303 148 HGAASG---MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-AEDGQLIFLAAG-DKSLYNTVAPLLD 221 (358)
Q Consensus 148 ~~~~~~---l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~g-~~~~~~~v~~ll~ 221 (358)
+++.+. ++++++|.|+++.+....+.+. ..+..|++ +|++|.+.. .-.+..++++.+ ..+..+.++.+++
T Consensus 69 ~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~----~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~ 144 (370)
T PRK08818 69 EEYVALAGGRAAGQLWLDVTSIKQAPVAAML----ASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCS 144 (370)
T ss_pred HHHhhhhcCCCCCeEEEECCCCcHHHHHHHH----hcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHH
Confidence 666654 7999999999999865554442 22446776 477777533 234555555554 4455788999999
Q ss_pred HhcCCeEEeCCcChHHHHHHHH
Q 018303 222 IMGKSRFYLGDVGNGAAMKLVV 243 (358)
Q Consensus 222 ~~g~~~~~~g~~g~~~~~k~~~ 243 (358)
.+|.+++.+.+..+......++
T Consensus 145 ~~Ga~v~~~~aeeHD~~~A~vS 166 (370)
T PRK08818 145 ALQAECVYATPEHHDRVMALVQ 166 (370)
T ss_pred HcCCEEEEcCHHHHHHHHHHHH
Confidence 9999999999988777777775
No 107
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.52 E-value=1.2e-12 Score=134.79 Aligned_cols=183 Identities=17% Similarity=0.256 Sum_probs=134.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhhHHhCCCc--cCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISLGAK--YQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
++|+|||+|.||..+++.+...| ++|.+||+++++.+.+.+.|.. ...+..++++++|+|++|+| +..+..++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp-~~~~~~vl-- 80 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVP-VLAMEKVL-- 80 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCC-HHHHHHHH--
Confidence 48999999999999999999988 4799999998887766666653 34567888999999999997 56888888
Q ss_pred cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCc--------CCCCceEEEec---CCHhHHH
Q 018303 147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKP--------AEDGQLIFLAA---GDKSLYN 214 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~---g~~~~~~ 214 (358)
+++.+.++++.+|+++++.+....+.+.+.+....+.++ ++|+.+.+.. .-.+..++++. .+++..+
T Consensus 81 -~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 159 (735)
T PRK14806 81 -ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALA 159 (735)
T ss_pred -HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHH
Confidence 777777889999999999887777777777654455554 5677655431 11222333333 3677889
Q ss_pred HHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHH
Q 018303 215 TVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL 258 (358)
Q Consensus 215 ~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~ 258 (358)
.+.++++.+|..++.+++..+.....+++.. -+.....+.|++
T Consensus 160 ~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~-ph~~~~~l~~~l 202 (735)
T PRK14806 160 RVDRLWRAVGADVLHMDVAHHDEVLAATSHL-PHLLAFSLVDQL 202 (735)
T ss_pred HHHHHHHHcCCEEEEcCHHHHhHHHHHhcch-HHHHHHHHHHHH
Confidence 9999999999989888876655555444433 333334445554
No 108
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.49 E-value=7.1e-13 Score=134.93 Aligned_cols=190 Identities=15% Similarity=0.125 Sum_probs=139.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHH-----------hC-------------CCccCCCHHHHhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAAS 126 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~~ 126 (358)
++|+|||+|.||..||..++..|++|.++|++++..+... +. .+.+..+++ .+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence 6899999999999999999999999999999987654321 11 244556664 4689
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEe
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA 206 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (358)
||+||.++|...++++-+| .++-+.+++++++...+++-+++ .+.+.+.. .-.++..+.+..++.. +++-++
T Consensus 393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~-p~r~~g~Hff~P~~~~---~lVEvv 464 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTSTISIS--LLAKALKR-PENFCGMHFFNPVHRM---PLVEVI 464 (715)
T ss_pred CCEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCC-CccEEEEecCCccccc---ceEEee
Confidence 9999999999999998885 66777788998887555544443 46666543 2346665555444332 233333
Q ss_pred c---CCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 018303 207 A---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA 279 (358)
Q Consensus 207 ~---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 279 (358)
. .+++.++.+..+++.+|+.++.+.+ +| ++.|-+... .++|++.+.++ |.++++++.++..+.
T Consensus 465 ~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG------fv~nRi~~~---~~~ea~~lv~~-Ga~~e~ID~a~~~~~ 531 (715)
T PRK11730 465 RGEKTSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLFP---YFAGFSQLLRD-GADFRQIDKVMEKQF 531 (715)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCceEEecCcCc------hhHHHHHHH---HHHHHHHHHHc-CCCHHHHHHHHHhhC
Confidence 3 3789999999999999999999988 77 555555443 35698888876 599999999987643
No 109
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.49 E-value=7.8e-13 Score=121.86 Aligned_cols=181 Identities=18% Similarity=0.171 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCccch-------hh-----------HHhC-------------CCccCCC--HHHHhhcC
Q 018303 81 MGTPMAQNLLKAGCDVTVWNRTKSKC-------DP-----------LISL-------------GAKYQPS--PDEVAASC 127 (358)
Q Consensus 81 iG~~~a~~l~~~g~~V~~~~~~~~~~-------~~-----------~~~~-------------g~~~~~~--~~~~~~~a 127 (358)
||..||..++..|++|.++|++++.. +. +.+. .+.+..+ ..+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 79999999999999999999998531 11 1111 1333333 56788999
Q ss_pred CEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHh----cCCeEecCCCCCCCCcCCCCceE
Q 018303 128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQLI 203 (358)
Q Consensus 128 Divi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~ 203 (358)
|+||.++|.+.+++..+| .++.+.+++++++. |+.+......+.+.+.. .++||+++|... +++
T Consensus 81 D~ViEav~E~~~~K~~~f--~~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~--------~lv 148 (314)
T PRK08269 81 DLVFEAVPEVLDAKREAL--RWLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHWLNPAYLM--------PLV 148 (314)
T ss_pred CEEEECCcCCHHHHHHHH--HHHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEecCCccccC--------ceE
Confidence 999999999999999986 55777889999885 55555556677777643 245555554221 122
Q ss_pred EEe---cCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018303 204 FLA---AGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI 280 (358)
Q Consensus 204 ~~~---~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~ 280 (358)
-++ .++++.++.+.++++.+|+.++++++.+ + +.+...+...++|++.++++.++++++++.++..+.+
T Consensus 149 EVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G 220 (314)
T PRK08269 149 EVSPSDATDPAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFG 220 (314)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 222 3488999999999999999999999844 2 2344455667889999999999999999999987654
Q ss_pred c
Q 018303 281 S 281 (358)
Q Consensus 281 ~ 281 (358)
.
T Consensus 221 ~ 221 (314)
T PRK08269 221 L 221 (314)
T ss_pred C
Confidence 3
No 110
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.48 E-value=1.1e-12 Score=133.37 Aligned_cols=191 Identities=15% Similarity=0.123 Sum_probs=139.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHH-----------hC-------------CCccCCCHHHHhh
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAA 125 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~ 125 (358)
-++|+|||+|.||..||..++..|++|.++|++++..+... +. .+....+++ .++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 391 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFD 391 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence 36899999999999999999999999999999987654321 11 244556664 468
Q ss_pred cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEE
Q 018303 126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 205 (358)
Q Consensus 126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||+||.++|...+++.-+| .++-+.+++++++...+++-++ ..+.+.+.. .-.++..+.+..++.. +++-+
T Consensus 392 ~aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~l~i--~~ia~~~~~-p~r~ig~Hff~P~~~~---~lvEv 463 (714)
T TIGR02437 392 NVDIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTSTISI--SLLAKALKR-PENFCGMHFFNPVHRM---PLVEV 463 (714)
T ss_pred CCCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-cccEEEEecCCCcccC---ceEee
Confidence 99999999999999988775 6677788899988755444444 346666543 2345665555444322 23333
Q ss_pred ec---CCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 018303 206 AA---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA 279 (358)
Q Consensus 206 ~~---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 279 (358)
+. .+++.++.+..+++.+|+.++.+.+ +| ++.|-+... .+.|+..+.++ |.++++++.++..+.
T Consensus 464 v~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~NRl~~~---~~~ea~~l~~e-G~~~~~ID~a~~~~~ 531 (714)
T TIGR02437 464 IRGEKSSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLFP---YFGGFSKLLRD-GADFVRIDKVMEKQF 531 (714)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEeCCccc------chHHHHHHH---HHHHHHHHHHC-CCCHHHHHHHHHhcC
Confidence 33 3789999999999999999999988 77 555555443 35699888865 699999999987643
No 111
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.48 E-value=2.1e-12 Score=118.58 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=122.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCC-ccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT-KSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 147 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~ 147 (358)
.+++|||||+|+||.++|+.|...|++|+++++. .+..+.+.+.|+... +..+++++||+|++++|...+...+.
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~--- 77 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE--- 77 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---
Confidence 4579999999999999999999999998876544 344455556677654 68889999999999998543555444
Q ss_pred ccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCc-----CCCCceEEE-ecC--CHhHHHHHHH
Q 018303 148 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKP-----AEDGQLIFL-AAG--DKSLYNTVAP 218 (358)
Q Consensus 148 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~-~~g--~~~~~~~v~~ 218 (358)
+++.+.++++. +|..+.|-.... +...+.. +..++ -+|....... ...|...++ ... +.+..+.+..
T Consensus 78 ~ei~~~l~~g~-iVs~aaG~~i~~--~~~~~~~-~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~ 153 (314)
T TIGR00465 78 AEIQPLLKEGK-TLGFSHGFNIHF--VQIVPPK-DVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALA 153 (314)
T ss_pred HHHHhhCCCCc-EEEEeCCccHhh--ccccCCC-CCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHH
Confidence 66777788886 666666655432 3333432 23333 3343322210 034444443 332 5677889999
Q ss_pred HHHHhcCC-------eE--EeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018303 219 LLDIMGKS-------RF--YLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG 278 (358)
Q Consensus 219 ll~~~g~~-------~~--~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 278 (358)
+++.+|.. .+ .+.+ .+...+ ++. -....+..+.|++ .+.|++++.++..+.+.
T Consensus 154 ~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~--l~G--s~pa~v~~~~eal---v~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 154 YAKAIGGGRAGVLETTFKEETESDLFGEQAV--LCG--GLTALIKAGFDTL---VEAGYQPELAYFETVHE 217 (314)
T ss_pred HHHHcCCCccceeechhHhhhhHHhcCcchh--HHh--HHHHHHHHHHHHH---HHcCCCHHHHHHHHHHH
Confidence 99999987 21 1111 221111 111 1112223333665 79999999999887764
No 112
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.46 E-value=1.7e-13 Score=116.24 Aligned_cols=152 Identities=14% Similarity=0.206 Sum_probs=101.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------C-------------CCccCCCHHHHhhcC
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAASC 127 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~a 127 (358)
+|+|||+|.||..+|..++..|++|.+||++++..+...+ . .+.+.++++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999999876543211 1 245678898888 99
Q ss_pred CEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEec
Q 018303 128 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA 207 (358)
Q Consensus 128 Divi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (358)
|+||.++|...+.+.-+| +++-+.++++++|...+++-+.. .+.+.+... -.++..+.+.++.. .+++-++.
T Consensus 80 dlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl~i~--~la~~~~~p-~R~ig~Hf~~P~~~---~~lVEvv~ 151 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSLSIS--ELAAALSRP-ERFIGMHFFNPPHL---MPLVEVVP 151 (180)
T ss_dssp SEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS-HH--HHHTTSSTG-GGEEEEEE-SSTTT-----EEEEEE
T ss_pred heehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCCCHH--HHHhccCcC-ceEEEEeccccccc---CceEEEeC
Confidence 999999999998888775 67777888999888665555443 455555332 23444444432221 12232222
Q ss_pred ---CCHhHHHHHHHHHHHhcCCeEEeCC
Q 018303 208 ---GDKSLYNTVAPLLDIMGKSRFYLGD 232 (358)
Q Consensus 208 ---g~~~~~~~v~~ll~~~g~~~~~~g~ 232 (358)
.+++.++.+..+++.+|+.++.+.+
T Consensus 152 ~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 152 GPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp -TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3789999999999999999988743
No 113
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.45 E-value=2.4e-13 Score=114.39 Aligned_cols=196 Identities=13% Similarity=0.136 Sum_probs=140.2
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----------C------------------CCccC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L------------------GAKYQ 117 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~------------------g~~~~ 117 (358)
....+.|+|||+|.||+.||+..+..|++|.++|++.+...+..+ . .+...
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~ 87 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS 87 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence 345568999999999999999999999999999999876544321 0 12346
Q ss_pred CCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc----CCeEecC-CCCC
Q 018303 118 PSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEA-PVSG 192 (358)
Q Consensus 118 ~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~-~~~~ 192 (358)
++..+++.++|+||.++-.+..++.-+| +++-...++.+++. ++.+......+...+++. |.||+.. |++.
T Consensus 88 tnv~~~v~dadliiEAivEn~diK~~lF--~~l~~~ak~~~il~--tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMK 163 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVENLDIKRKLF--KDLDKIAKSSTILA--TNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMK 163 (298)
T ss_pred CCHHHhhhhhHHHHHHHHHhHHHHHHHH--HHHHhhcccceEEe--ecccceeHHHHHhhccChhhhceeeccCCchhHH
Confidence 6788889999999999988888887775 45555566677666 333333334555555442 5555543 3332
Q ss_pred CCCcCCCCceEEEecCCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018303 193 SKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL 271 (358)
Q Consensus 193 ~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 271 (358)
.. ..+--...+++.+..+..+-+.+|+.++-+.+ +| -+++.++...+ .|++++.++...+.+++
T Consensus 164 Lv------EVir~~~TS~eTf~~l~~f~k~~gKttVackDtpG-----FIVNRlLiPyl----~ea~r~yerGdAskeDI 228 (298)
T KOG2304|consen 164 LV------EVIRTDDTSDETFNALVDFGKAVGKTTVACKDTPG-----FIVNRLLIPYL----MEAIRMYERGDASKEDI 228 (298)
T ss_pred Hh------hhhcCCCCCHHHHHHHHHHHHHhCCCceeecCCCc-----hhhhHHHHHHH----HHHHHHHHhcCCcHhhH
Confidence 22 11111123688999999999999999999998 88 34455555544 49999999999999999
Q ss_pred HHHHhhcccc
Q 018303 272 VEVVSQGAIS 281 (358)
Q Consensus 272 ~~~~~~~~~~ 281 (358)
+..+..+++.
T Consensus 229 DtaMklGagy 238 (298)
T KOG2304|consen 229 DTAMKLGAGY 238 (298)
T ss_pred HHHHhccCCC
Confidence 9999987665
No 114
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.45 E-value=1.9e-12 Score=131.83 Aligned_cols=187 Identities=15% Similarity=0.117 Sum_probs=136.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHH-----------hC-------------CCccCCCHHHHhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAAS 126 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~~ 126 (358)
++|+|||+|.||..||..++..|++|.++|++++..+... +. .+..+.+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5899999999999999999999999999999987654321 11 244556775 5689
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEe
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA 206 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (358)
||+||.++|...+++.-+| .++-+.+++++++...+++-++ ..+.+.+... -.++..+.+..++.. +++-++
T Consensus 415 aDlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~p-~r~ig~Hff~P~~~m---~LvEvv 486 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTSALPI--KDIAAVSSRP-EKVIGMHYFSPVDKM---QLLEII 486 (737)
T ss_pred CCeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCCc-cceEEEeccCCcccC---ceEEEe
Confidence 9999999999999998775 6677778899888744443333 4566665432 245555555433322 233333
Q ss_pred c---CCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303 207 A---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 276 (358)
Q Consensus 207 ~---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 276 (358)
. .+++.++.+..+++.+|+.++.+++ +| ++.|-+.. ..++|+..+.++ |+++++++.++.
T Consensus 487 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------Fi~NRi~~---~~~~ea~~lv~e-Gv~~~~ID~a~~ 550 (737)
T TIGR02441 487 THDGTSKDTLASAVAVGLKQGKVVIVVKDGPG------FYTTRCLG---PMLAEVIRLLQE-GVDPKKLDKLTT 550 (737)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC------chHHHHHH---HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 3 3789999999999999999999988 77 55554443 346798888765 789999999864
No 115
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.45 E-value=2.5e-12 Score=130.64 Aligned_cols=188 Identities=13% Similarity=0.103 Sum_probs=135.2
Q ss_pred CCeEEEEcCChhHHHHHHHHH-HCCCcEEEEcCCccchhhHH-----------h-------------CCCccCCCHHHHh
Q 018303 70 PGRIGFLGMGIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLI-----------S-------------LGAKYQPSPDEVA 124 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~-~~g~~V~~~~~~~~~~~~~~-----------~-------------~g~~~~~~~~~~~ 124 (358)
.++|+|||+|.||..+|..++ ..|++|.++|++++..+... + ..+...++++ .+
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 382 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GF 382 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hh
Confidence 368999999999999999998 58999999999987543321 1 1244556664 57
Q ss_pred hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEE
Q 018303 125 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 204 (358)
Q Consensus 125 ~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (358)
++||+||.++|...+++.-+| .++-+..++++++...+++-+++ .+.+.+... -.++..+.+..++.. +++-
T Consensus 383 ~~adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p-~r~~g~HffnP~~~~---~lVE 454 (699)
T TIGR02440 383 KDVDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSSLPIG--QIAAAASRP-ENVIGLHYFSPVEKM---PLVE 454 (699)
T ss_pred ccCCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCHH--HHHHhcCCc-ccEEEEecCCccccC---ceEE
Confidence 899999999999999998775 66777788888887554444443 466665432 245555555443322 2333
Q ss_pred Eec---CCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303 205 LAA---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 276 (358)
Q Consensus 205 ~~~---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 276 (358)
++. .+++.++.+..+++.+|+.++.+.+ +| ++.|-+.. ..++|+..+.+ .|+++++++.++.
T Consensus 455 vv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl~~---~~~~Ea~~l~~-~G~~~~dID~a~~ 520 (699)
T TIGR02440 455 VIPHAGTSEQTIATTVALAKKQGKTPIVVADKAG------FYVNRILA---PYMNEAARLLL-EGEPVEHIDKALV 520 (699)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccc------hHHHHHHH---HHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 333 3789999999999999999999987 66 44444443 34569988877 4689999999875
No 116
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.44 E-value=3e-12 Score=130.38 Aligned_cols=188 Identities=14% Similarity=0.108 Sum_probs=137.0
Q ss_pred CCeEEEEcCChhHHHHHHHHH-HCCCcEEEEcCCccchhhHH-----------hC-------------CCccCCCHHHHh
Q 018303 70 PGRIGFLGMGIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVA 124 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~-~~g~~V~~~~~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~ 124 (358)
-++|+|||+|.||..+|..++ ..|++|.++|++++..+... +. .+..++++ +.+
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 387 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGF 387 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHh
Confidence 368999999999999999998 88999999999877544321 11 24455666 457
Q ss_pred hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEE
Q 018303 125 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIF 204 (358)
Q Consensus 125 ~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (358)
++||+||.++|...+++.-+| +++-+.++|++++...+++-+++ .+.+.+... -.++..+.+..+... +++-
T Consensus 388 ~~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~l~i~--~la~~~~~p-~r~ig~Hff~P~~~~---~lVE 459 (708)
T PRK11154 388 KHADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSSLPIG--QIAAAAARP-EQVIGLHYFSPVEKM---PLVE 459 (708)
T ss_pred ccCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH--HHHHhcCcc-cceEEEecCCccccC---ceEE
Confidence 899999999999999988775 66777789999888555554443 466665432 356666555444322 2333
Q ss_pred Eec---CCHhHHHHHHHHHHHhcCCeEEeCC-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018303 205 LAA---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 276 (358)
Q Consensus 205 ~~~---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 276 (358)
++. .+++.++.+..+++.+|+.++.+.+ +| ++.|-+... .++|+..++++ |+++++++.++.
T Consensus 460 vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl~~~---~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 460 VIPHAKTSAETIATTVALAKKQGKTPIVVRDGAG------FYVNRILAP---YINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred EECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc------HHHHHHHHH---HHHHHHHHHHc-CCCHHHHHHHHH
Confidence 333 3789999999999999999999877 77 444544443 35699888776 789999998876
No 117
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.44 E-value=1.7e-13 Score=104.16 Aligned_cols=90 Identities=26% Similarity=0.427 Sum_probs=75.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCC---CcEEE-EcCCccchhhHHhC-CCccCC-CHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAG---CDVTV-WNRTKSKCDPLISL-GAKYQP-SPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g---~~V~~-~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
||||||+|+||.++++.|.+.| ++|.+ ++|++++.+.+.+. +..... +..|+++++|+|++|+| +....+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~-p~~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK-PQQLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S--GGGHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC-HHHHHHHH-
Confidence 6999999999999999999999 89995 59999988877554 555455 89999999999999995 88999998
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
+++ ....+++++|++..+
T Consensus 79 --~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 --SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp --HHH-HHHHTTSEEEEESTT
T ss_pred --HHH-hhccCCCEEEEeCCC
Confidence 777 777899999998653
No 118
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.41 E-value=4.8e-13 Score=111.07 Aligned_cols=136 Identities=17% Similarity=0.266 Sum_probs=98.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------------CCccCCCHHHHhhcCCEEEEeeCCh
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLADP 137 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivi~~vp~~ 137 (358)
||+|||.|++|.++|..|+..|++|.+|.|+++..+.+.+. .+..++|++++++++|+|++++| +
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP-s 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP-S 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S--G
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc-H
Confidence 69999999999999999999999999999998777766542 13457789999999999999997 7
Q ss_pred hhHhhhhcccccccccCCCCCEEEEccCCC-h----hHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecCCHh
Q 018303 138 ESAMDVACGKHGAASGMGPGKGYVDVSTVD-G----DTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKS 211 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~-~----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 211 (358)
...+.++ +++.+.++++..+|.++.|- . ...+.+.+.+....+.++..|.+..+..........+.+.+++
T Consensus 80 ~~~~~~~---~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 80 QAHREVL---EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp GGHHHHH---HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred HHHHHHH---HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 7889999 88999999999999997764 1 2344556666555577788888766655444444445555543
No 119
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.40 E-value=7.6e-13 Score=125.79 Aligned_cols=104 Identities=15% Similarity=0.098 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
.+.+++|+|||+|.||+.+|++++.+|++|+++++++.+.......|+.. .+++++++.+|+|++|+. +++++
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atG----t~~iI-- 323 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATG----NKDII-- 323 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCC----ccccc--
Confidence 46678999999999999999999999999999999877654444456554 478999999999999973 56777
Q ss_pred cccccccCCCCCEEEEccCCChhHHHHHHHHHHh
Q 018303 147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA 180 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~ 180 (358)
+.+.+..|++|++++|++++. .+...+.+..
T Consensus 324 ~~e~~~~MKpGAiLINvGr~d---~Ei~i~aL~~ 354 (476)
T PTZ00075 324 TLEHMRRMKNNAIVGNIGHFD---NEIQVAELEA 354 (476)
T ss_pred CHHHHhccCCCcEEEEcCCCc---hHHhHHHHHh
Confidence 567889999999999999984 3344455554
No 120
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.37 E-value=2e-11 Score=109.77 Aligned_cols=157 Identities=20% Similarity=0.302 Sum_probs=112.3
Q ss_pred HHHHHHHCC--CcEEEEcCCccchhhHHhCCCccCC-CHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEE
Q 018303 85 MAQNLLKAG--CDVTVWNRTKSKCDPLISLGAKYQP-SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 161 (358)
Q Consensus 85 ~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi 161 (358)
+|+.|++.| ++|.++|++++..+...+.|+.... +..+.++++|+||+|+| ...+..++ +++.+.+++|++|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP-~~~~~~~l---~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVP-VSAIEDVL---EEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S--HHHHHHHH---HHHHCGS-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCC-HHHHHHHH---HHhhhhcCCCcEEE
Confidence 578898888 7899999999887777666654321 22578899999999998 77899999 88888899999999
Q ss_pred EccCCChhHHHHHHHHHHhcCCeEecC-CCCCCC--------CcCCCCceEEEecC---CHhHHHHHHHHHHHhcCCeEE
Q 018303 162 DVSTVDGDTSKLINGHIKATGASFLEA-PVSGSK--------KPAEDGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFY 229 (358)
Q Consensus 162 ~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~ 229 (358)
|+++.+....+.+.+.+. .+..|++. |++|.+ ...-.+..++++.+ +++.++.+..+++.+|.+++.
T Consensus 77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~ 155 (258)
T PF02153_consen 77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE 155 (258)
T ss_dssp E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence 999999988888888776 56677764 777773 23334666666643 467889999999999999999
Q ss_pred eCCcChHHHHHHHHHHH
Q 018303 230 LGDVGNGAAMKLVVNMI 246 (358)
Q Consensus 230 ~g~~g~~~~~k~~~n~~ 246 (358)
+....+.....+++.+-
T Consensus 156 ~~~eeHD~~~A~vshlp 172 (258)
T PF02153_consen 156 MDAEEHDRIMAYVSHLP 172 (258)
T ss_dssp --HHHHHHHHHHHTHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 87777666666665443
No 121
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.37 E-value=7.1e-13 Score=104.82 Aligned_cols=111 Identities=24% Similarity=0.372 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEE-EcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~-~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
...++|+|||+|++|..+++.|.+.|++|.. |+|+....+.+... +.....+++|+++++|++++++| +..+..+.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavp-DdaI~~va- 85 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVP-DDAIAEVA- 85 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S--CCHHHHHH-
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEec-hHHHHHHH-
Confidence 4457999999999999999999999999875 67887666655543 33445578899999999999998 45888888
Q ss_pred cccccccc--CCCCCEEEEccCCChhHHHHHHHHHHhcCCeE
Q 018303 146 GKHGAASG--MGPGKGYVDVSTVDGDTSKLINGHIKATGASF 185 (358)
Q Consensus 146 ~~~~~~~~--l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~ 185 (358)
+++... .++|++|+.||.....+ +.+.+.+.|...
T Consensus 86 --~~La~~~~~~~g~iVvHtSGa~~~~---vL~p~~~~Ga~~ 122 (127)
T PF10727_consen 86 --EQLAQYGAWRPGQIVVHTSGALGSD---VLAPARERGAIV 122 (127)
T ss_dssp --HHHHCC--S-TT-EEEES-SS--GG---GGHHHHHTT-EE
T ss_pred --HHHHHhccCCCCcEEEECCCCChHH---hhhhHHHCCCeE
Confidence 777766 78999999998876654 334455555443
No 122
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.35 E-value=7.3e-12 Score=106.50 Aligned_cols=121 Identities=21% Similarity=0.249 Sum_probs=82.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--------------------CCccCCCHHHHhhcCCEE
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDVT 130 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDiv 130 (358)
|+|+|||+|.+|..+|..|+..|++|+++|.++++.+.+.+. ...+.++..+.++++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 699999999999999999999999999999999877765421 235567888889999999
Q ss_pred EEeeCChh---------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHH-HHHHhcC-----CeEecCCCCCCC
Q 018303 131 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLIN-GHIKATG-----ASFLEAPVSGSK 194 (358)
Q Consensus 131 i~~vp~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~-~~l~~~~-----~~~~~~~~~~~~ 194 (358)
++|+|.+. .++.++ +.+.+.++++++||.-|+..|...+.+. ..+.+.+ ..+..+|.+-.+
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~---~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~ 156 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAI---ESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLRE 156 (185)
T ss_dssp EE----EBETTTSBETHHHHHHH---HHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------T
T ss_pred EEecCCCccccCCccHHHHHHHH---HHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCC
Confidence 99998553 245555 6777888999999999999999988554 4444433 355566765443
No 123
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.34 E-value=5.4e-11 Score=109.15 Aligned_cols=243 Identities=18% Similarity=0.166 Sum_probs=155.1
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc--------------cCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 80 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------------YQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 80 ~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~--------------~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
.||..+|..|+..|++|.+++|+ +..+.+.+.|+. ..+++++ ...+|+|++++ +..+++.++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~v-Ks~~~~~~l- 76 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITV-KAYQTEEAA- 76 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEec-cchhHHHHH-
Confidence 38999999999999999999997 445556544421 1223344 56899999999 477899988
Q ss_pred ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCC----eEecCCCCCCC--CcCCCCceEEEecC---CHhHHHHH
Q 018303 146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA----SFLEAPVSGSK--KPAEDGQLIFLAAG---DKSLYNTV 216 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~g---~~~~~~~v 216 (358)
+.+.+.+.++++|+.+.+|-.. .+.+.+.+....+ .+..+-..+.. .....+.. .++. ..+..+.+
T Consensus 77 --~~l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~--~iG~~~~~~~~~~~l 151 (293)
T TIGR00745 77 --ALLLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGAT--KIGDYVGENEAVEAL 151 (293)
T ss_pred --HHhHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccE--EEecCCCchHHHHHH
Confidence 7888888899999988777543 3455555543221 11111111111 11111222 2222 22445677
Q ss_pred HHHHHHhcCCeEEeCCcChHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCCH--HHHHH
Q 018303 217 APLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG---------------------SMMATFSEGLLHSEKVGLDP--NVLVE 273 (358)
Q Consensus 217 ~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~---------------------~~~~~~~Ea~~l~~~~G~~~--~~~~~ 273 (358)
.++|+..+..+....+.....|.|++.|...+ .+..++.|+..++++.|+++ +.+.+
T Consensus 152 ~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~ 231 (293)
T TIGR00745 152 AELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEE 231 (293)
T ss_pred HHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 78888888888888888889999999886433 23467899999999999753 33444
Q ss_pred HHhhccccchhhhccccccccCCCCCCC--chhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018303 274 VVSQGAISAPMYSLKGPSMIESLYPTAF--PLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK 338 (358)
Q Consensus 274 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~ 338 (358)
.+.......+ ...++|.+ |+..|. +++.+ .+.++++++++|+++|.++.++++++...
T Consensus 232 ~~~~~~~~~~---~~~sSm~~-D~~~gr~tEid~i---~G~~v~~a~~~gv~~P~~~~l~~~~~~~e 291 (293)
T TIGR00745 232 LVRAVIRMTA---ENTSSMLQ-DLLRGRRTEIDAI---NGAVVRLAEKLGIDAPVNRTLYALLKALE 291 (293)
T ss_pred HHHHHHhcCC---CCCChHHH-HHHcCCcchHHHh---ccHHHHHHHHcCCCCChHHHHHHHHHHhh
Confidence 4433110000 01123332 222222 34444 78899999999999999999999887643
No 124
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.27 E-value=1.1e-10 Score=104.09 Aligned_cols=225 Identities=16% Similarity=0.188 Sum_probs=147.4
Q ss_pred CcEEEEcCCccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHH
Q 018303 94 CDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSK 172 (358)
Q Consensus 94 ~~V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~ 172 (358)
++|.+++|++++.+.+.+ .|+....+..++++++|+||+|++ +..++.++ +++...+.++++||+++.+-+. +
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl---~~l~~~~~~~~~ivS~~agi~~--~ 83 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL---SELKSEKGKDKLLISIAAGVTL--E 83 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH---HHHhhhccCCCEEEEecCCCCH--H
Confidence 679999999888777655 377777888899999999999996 89999998 7776656778899988776555 4
Q ss_pred HHHHHHHhcCCeEec-CCCCCCCCcCCCCceEEEecC--CHhHHHHHHHHHHHhcCCeEEeCC--cChHHHHHHHHHHHH
Q 018303 173 LINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIM 247 (358)
Q Consensus 173 ~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~~g~~~~~~g~--~g~~~~~k~~~n~~~ 247 (358)
.+.+.+... ..++- .|.. +.....+...+..+. +++..+.++.+|+.+|..+ .+.+ .......--....+.
T Consensus 84 ~l~~~~~~~-~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~-~v~E~~~~~~talsgsgPA~~ 159 (245)
T TIGR00112 84 KLSQLLGGT-RRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVV-ELPEALMDAVTALSGSGPAYV 159 (245)
T ss_pred HHHHHcCCC-CeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEE-EECHHHcchHHhhccCcHHHH
Confidence 466666432 12332 2322 222233433333332 5667789999999999765 4444 332333333445555
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc-cchhhhc--cccccccCCC-CCCCchhhHHHHHHHHHHHHHhcCCC
Q 018303 248 GSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSL--KGPSMIESLY-PTAFPLKHQQKDLRLALGLAESVSQS 323 (358)
Q Consensus 248 ~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~-~s~~~~~--~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~gi~ 323 (358)
+.++..+.++ +.+.|+++++..+++.++.. ...++.. ..+..+.... .||.+... .++..++.|+.
T Consensus 160 ~~~~~al~~~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~~-------gl~~Le~~~~~ 229 (245)
T TIGR00112 160 FLFIEALADA---GVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTIA-------GLAVLEEKGVR 229 (245)
T ss_pred HHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHHH-------HHHHHHHCChH
Confidence 5565555554 48899999999999998643 3333322 2233222232 56554444 45667788999
Q ss_pred chHHHHHHHHHHHHH
Q 018303 324 TPIAAAANELYKVAK 338 (358)
Q Consensus 324 ~p~~~a~~~~~~~a~ 338 (358)
--+.+++.+.++++.
T Consensus 230 ~~~~~a~~aa~~r~~ 244 (245)
T TIGR00112 230 GAVIEAVEAAVRRSR 244 (245)
T ss_pred HHHHHHHHHHHHHhc
Confidence 889888888887764
No 125
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.27 E-value=2.3e-10 Score=102.11 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=119.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhh-cCCEEEEeeCChhhHhhhhccccc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACGKHG 149 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~vp~~~~~~~~~~~~~~ 149 (358)
.+|||||+|+||+.+|..+...||.|+.++|+. .-......|...++.+.++++ .+|+|++|+ ....++.++ +.
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlct-silsiekil---at 127 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCT-SILSIEKIL---AT 127 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEe-hhhhHHHHH---Hh
Confidence 589999999999999999999999999999975 323334457777788888875 599999999 688899998 55
Q ss_pred cccc-CCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCCCcCCCC---ceEEE--ecC----CHhHHHHHHH
Q 018303 150 AASG-MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSKKPAEDG---QLIFL--AAG----DKSLYNTVAP 218 (358)
Q Consensus 150 ~~~~-l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~---~~~~~--~~g----~~~~~~~v~~ 218 (358)
+-.+ ++.|+++++..+...-....+.+.|++. ...+.+ |++|........ +.++. -.| .++..+.+.+
T Consensus 128 ypfqrlrrgtlfvdvlSvKefek~lfekYLPkd-fDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fle 206 (480)
T KOG2380|consen 128 YPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD-FDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLE 206 (480)
T ss_pred cCchhhccceeEeeeeecchhHHHHHHHhCccc-cceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHH
Confidence 5444 8999999999888887777888888653 455544 666665333222 22221 123 3678899999
Q ss_pred HHHHhcCCeEEeCCcC
Q 018303 219 LLDIMGKSRFYLGDVG 234 (358)
Q Consensus 219 ll~~~g~~~~~~g~~g 234 (358)
++...|++.+++.-..
T Consensus 207 If~cegckmVemS~ee 222 (480)
T KOG2380|consen 207 IFACEGCKMVEMSYEE 222 (480)
T ss_pred HHHhcCCeEEEEEeec
Confidence 9999999999886533
No 126
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.24 E-value=3.7e-11 Score=109.28 Aligned_cols=113 Identities=20% Similarity=0.236 Sum_probs=86.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc--CCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY--QPSPDEVAASCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~aDivi~~vp~~~~~~~~~ 144 (358)
++.+++++|||+|.||+.+|+.|+.+|++|++++|++++.+...+.+... ..++.++++++|+||.++|.+ ++
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii 222 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VL 222 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----Hh
Confidence 56678999999999999999999999999999999987665555545432 235678889999999999864 33
Q ss_pred cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCC
Q 018303 145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 189 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~ 189 (358)
+++.++.++++.++||++..+.... + +..++.|+..+-+|
T Consensus 223 --~~~~l~~~k~~aliIDlas~Pg~td--f-~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 223 --TADVLSKLPKHAVIIDLASKPGGTD--F-EYAKKRGIKALLAP 262 (287)
T ss_pred --CHHHHhcCCCCeEEEEeCcCCCCCC--H-HHHHHCCCEEEEeC
Confidence 3455678899999999988654432 3 45667777766544
No 127
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.23 E-value=2.7e-09 Score=91.80 Aligned_cols=197 Identities=16% Similarity=0.233 Sum_probs=140.3
Q ss_pred CeEEEEcCChh--------------------HHHHHHHHHHCCCcEEEEcCCccch-----hhHHhCCCccCCCHHHHhh
Q 018303 71 GRIGFLGMGIM--------------------GTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQPSPDEVAA 125 (358)
Q Consensus 71 ~~IgIIG~G~i--------------------G~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~ 125 (358)
|+|.|+|+|+. |..+|-.++..||+|...+++.+-. ++..+.|+..++|-.++++
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~ 81 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAE 81 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhh
Confidence 68889999886 8889999999999999999876543 3455669999999999999
Q ss_pred cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhH-HHHHHHHHHhc----CCe-EecCCCCCCCCcCCC
Q 018303 126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-SKLINGHIKAT----GAS-FLEAPVSGSKKPAED 199 (358)
Q Consensus 126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~-~~~l~~~l~~~----~~~-~~~~~~~~~~~~~~~ 199 (358)
.+.+.++.+|....|-.+. .++++.++.|+++.|+++.+|.. ...|...|+.. |+. +..+.+.|.+. +
T Consensus 82 ~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~---h 155 (340)
T COG4007 82 HGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ---H 155 (340)
T ss_pred cceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC---C
Confidence 9999999999999999999 99999999999999999998764 23344444332 222 22233444432 2
Q ss_pred CceEEEec----C----CHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH
Q 018303 200 GQLIFLAA----G----DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNV 270 (358)
Q Consensus 200 ~~~~~~~~----g----~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~ 270 (358)
+.. ++.+ | .++.+++..+++++.|+.++.+.. ..-.+..-....+....+.++.+-+.+..+ .|.+.+.
T Consensus 156 ~~y-viagr~t~g~elATeEQi~r~velaes~Gk~~yv~pa-dv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eM 233 (340)
T COG4007 156 GHY-VIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPA-DVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKEM 233 (340)
T ss_pred ceE-EEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 222 2222 1 688899999999999999877663 223333333445555566666677766653 6777776
Q ss_pred HHHHH
Q 018303 271 LVEVV 275 (358)
Q Consensus 271 ~~~~~ 275 (358)
+.+-+
T Consensus 234 IekQi 238 (340)
T COG4007 234 IEKQI 238 (340)
T ss_pred HHHHH
Confidence 65443
No 128
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.16 E-value=2e-09 Score=93.00 Aligned_cols=252 Identities=16% Similarity=0.192 Sum_probs=163.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC----cEEEEcCCccchhh-HHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDP-LISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~----~V~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
|++|+||.|+|..++++.+.+.|. ++..+..+...... +...|+..+.+..+.++.+|++++++ ++..++.++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~sv-Kp~~i~~vl- 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSV-KPQVIESVL- 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEee-cchhHHHHh-
Confidence 479999999999999999998884 56666663333333 55567777767789999999999999 788999998
Q ss_pred ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecC--CHhHHHHHHHHHHHh
Q 018303 146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIM 223 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~~ 223 (358)
.++-..+..+++++.+.-|.... .+...+. ....++.. +...+.....+..++..+. ..+..+.++.++..+
T Consensus 79 --s~~~~~~~~~~iivS~aaG~tl~--~l~~~l~-~~~rviRv-mpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~v 152 (267)
T KOG3124|consen 79 --SEIKPKVSKGKIIVSVAAGKTLS--SLESKLS-PPTRVIRV-MPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAV 152 (267)
T ss_pred --hcCccccccceEEEEEeecccHH--HHHHhcC-CCCceEEe-cCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhc
Confidence 66666678889999887665554 3555554 11222221 1112223333443333332 566678999999999
Q ss_pred cCCeEEeCC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-ccchhhhc--cccccccCCC-
Q 018303 224 GKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSL--KGPSMIESLY- 297 (358)
Q Consensus 224 g~~~~~~g~--~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~-~~s~~~~~--~~~~~~~~~~- 297 (358)
|+..- +.+ +.....+--....+.+.++.++.+. .-+.|++++..+++..++. |...+... -.|..++++.
T Consensus 153 G~~~e-vpE~~iDavTgLsGSgPAy~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V~ 228 (267)
T KOG3124|consen 153 GLCEE-VPEKCIDAVTGLSGSGPAYVFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDVC 228 (267)
T ss_pred Cccee-CcHHhhhHHhhccCCcHHHHHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCCC
Confidence 97542 222 1111111111223344444333333 3789999999999988763 44444332 2466777666
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018303 298 PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 341 (358)
Q Consensus 298 ~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~g 341 (358)
+|+.+... .+...|+-|++..+.+++.+.-.++++.|
T Consensus 229 SPgG~TI~-------glh~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 229 SPGGTTIY-------GLHALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred CCCcchHH-------HHHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 57654443 35677788999999999999999888754
No 129
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.14 E-value=1.6e-10 Score=93.84 Aligned_cols=90 Identities=27% Similarity=0.283 Sum_probs=67.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc-chhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 147 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~ 147 (358)
++++|+|||+|+.|.+.|..|+..|.+|++..|... ..+...+.|... .+..|+++.+|+|++.+| +.....++ .
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~P-D~~q~~vy--~ 78 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLP-DEVQPEVY--E 78 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S--HHHHHHHH--H
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCC-hHHHHHHH--H
Confidence 467999999999999999999999999999888766 556666778775 489999999999999998 45556666 4
Q ss_pred ccccccCCCCCEEEE
Q 018303 148 HGAASGMGPGKGYVD 162 (358)
Q Consensus 148 ~~~~~~l~~~~~vi~ 162 (358)
+++.+.|++|++++-
T Consensus 79 ~~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 79 EEIAPNLKPGATLVF 93 (165)
T ss_dssp HHHHHHS-TT-EEEE
T ss_pred HHHHhhCCCCCEEEe
Confidence 778889999998773
No 130
>PLN02494 adenosylhomocysteinase
Probab=99.13 E-value=1.8e-10 Score=109.49 Aligned_cols=104 Identities=13% Similarity=0.023 Sum_probs=85.8
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
.+.+++|+|+|+|.||+.+|++++.+|++|+++++++.+.......|.... +++++++.+|+|+.++. +++++
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTG----t~~vI-- 323 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTG----NKDII-- 323 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCC----Cccch--
Confidence 367899999999999999999999999999999999876555555566543 78899999999998653 45555
Q ss_pred cccccccCCCCCEEEEccC-CChhHHHHHHHH
Q 018303 147 KHGAASGMGPGKGYVDVST-VDGDTSKLINGH 177 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~-~~~~~~~~l~~~ 177 (358)
+.+.+..|++|++++|+++ +..++..+|.+.
T Consensus 324 ~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 324 MVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred HHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 4667789999999999999 568888888876
No 131
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.13 E-value=3.7e-10 Score=102.06 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=85.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHH--CCCcEE-EEcCCccchhhHHhC-C-CccCCCHHHHhhcCCEEEEeeCChhhHhh
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLK--AGCDVT-VWNRTKSKCDPLISL-G-AKYQPSPDEVAASCDVTFAMLADPESAMD 142 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~--~g~~V~-~~~~~~~~~~~~~~~-g-~~~~~~~~~~~~~aDivi~~vp~~~~~~~ 142 (358)
+..+||||||+|+||+.+++.+.. .++++. ++||++++.+.+.+. + ...+.+++++++++|+|++|+|.... ..
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e 82 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RA 82 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HH
Confidence 345799999999999999999986 377776 789998877665543 4 34567899999999999999985443 44
Q ss_pred hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeE
Q 018303 143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 185 (358)
Q Consensus 143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~ 185 (358)
+. . ..++.|+.++..+.+...+.+++.+..++++..+
T Consensus 83 ~~---~---~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 83 IV---E---PVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred HH---H---HHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 43 2 3456788888788777777889999998887764
No 132
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.13 E-value=2.6e-10 Score=94.42 Aligned_cols=115 Identities=21% Similarity=0.190 Sum_probs=86.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC-CC----ccCCCHHHHhhcCCEEEEeeCChhh-H
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GA----KYQPSPDEVAASCDVTFAMLADPES-A 140 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-g~----~~~~~~~~~~~~aDivi~~vp~~~~-~ 140 (358)
..+++|+|+|+|.||..+++.+...| .+|.+++|++++.+.+.+. +. ....+..++++++|+|++++|.+.. .
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~ 96 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPG 96 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCC
Confidence 44579999999999999999999986 7899999998877665433 22 2345777878999999999986654 3
Q ss_pred hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303 141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 188 (358)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~ 188 (358)
+...+. ...++++.+++|++..+... .+.+.+++.|+.+++.
T Consensus 97 ~~~~~~----~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~g 138 (155)
T cd01065 97 DELPLP----PSLLKPGGVVYDVVYNPLET--PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCC----HHHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeCC
Confidence 333311 12368999999998875544 7888888888777654
No 133
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=99.10 E-value=6.9e-09 Score=91.92 Aligned_cols=244 Identities=16% Similarity=0.174 Sum_probs=167.3
Q ss_pred CeEEEEcCChhHHHHHHHHHH--CCCcEEEEcCCccchhhHH-------------------hCCCccCCCHHHHhhcCCE
Q 018303 71 GRIGFLGMGIMGTPMAQNLLK--AGCDVTVWNRTKSKCDPLI-------------------SLGAKYQPSPDEVAASCDV 129 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~--~g~~V~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~aDi 129 (358)
++|.-||+|.+|......++- -..+|.++|.+..+...+. ..+..+.++.+..++++|+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 589999999999887666543 2357888988876654332 1245677899999999999
Q ss_pred EEEeeCChhhHhhhhccc-----------ccccccCCCCCEEEEccCCChhHHHHHHHHHHhc--CCe--EecCCCCCCC
Q 018303 130 TFAMLADPESAMDVACGK-----------HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GAS--FLEAPVSGSK 194 (358)
Q Consensus 130 vi~~vp~~~~~~~~~~~~-----------~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~--~~~~~~~~~~ 194 (358)
|++.+..+..+..+=.|. .-+.+.-...++++.-|+.++...+.+...+... ++. .++.|.|-.+
T Consensus 82 vfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpeflae 161 (481)
T KOG2666|consen 82 VFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLAE 161 (481)
T ss_pred EEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhcc
Confidence 999997665554332100 1122334567899999999999999998888532 443 4555655332
Q ss_pred CcC---CCCceEEEecC--CHhHHHHH---HHHHHHhc-CCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018303 195 KPA---EDGQLIFLAAG--DKSLYNTV---APLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG 265 (358)
Q Consensus 195 ~~~---~~~~~~~~~~g--~~~~~~~v---~~ll~~~g-~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G 265 (358)
..+ -..+--+++|| .++..+.+ ..+.+.+- ..-+.....-+.+..|++.|.+++--+..++...++|++.|
T Consensus 162 gtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatg 241 (481)
T KOG2666|consen 162 GTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATG 241 (481)
T ss_pred cchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence 211 12233355666 34444444 44455543 22345556777999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhccccchhhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCC
Q 018303 266 LDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS 323 (358)
Q Consensus 266 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~ 323 (358)
.|.+++..++...+. .++.+++ .+-||....++||+-..+-+.+-+|+|
T Consensus 242 adv~eva~avg~d~r-------ig~kfl~--asvgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 242 ADVSEVAYAVGTDSR-------IGSKFLN--ASVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred CCHHHHHHHhccccc-------ccHHHhh--cccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 999999887775431 1222332 244677788999999999999999887
No 134
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.09 E-value=5.8e-10 Score=105.23 Aligned_cols=107 Identities=16% Similarity=0.071 Sum_probs=87.8
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
.+.+++|+|+|+|.+|+.+|+.++.+|++|+++++++.+.......|... .+++++++.+|+||.+++ +++++
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v-~~leeal~~aDVVItaTG----~~~vI-- 264 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKIGDIFITATG----NKDVI-- 264 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEe-CCHHHHHhcCCEEEECCC----CHHHH--
Confidence 36788999999999999999999999999999999887655555556644 367889999999998774 35555
Q ss_pred cccccccCCCCCEEEEccCCCh-hHHHHHHHHHHh
Q 018303 147 KHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKA 180 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~ 180 (358)
+.+.+..|++|++++|.++... ++.++|.+.+.+
T Consensus 265 ~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 265 RGEHFENMKDGAIVANIGHFDVEIDVKALEELAVE 299 (406)
T ss_pred HHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence 3456788999999999999886 888888887654
No 135
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.01 E-value=5.3e-08 Score=83.27 Aligned_cols=129 Identities=13% Similarity=0.187 Sum_probs=91.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 149 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~ 149 (358)
|+|+|||. |.||+.+++.|.+.|+.|. +++||+|++|+| ...+..++ ++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavP-v~~~~~~i---~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVP-IDAALNYI---ES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCC-HHHHHHHH---HH
Confidence 58999988 9999999999999999985 368999999998 66777777 44
Q ss_pred ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC-CCCCCCCcCCC-CceEEEec--CCHhHHHHHHHHHHHhcC
Q 018303 150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA-PVSGSKKPAED-GQLIFLAA--GDKSLYNTVAPLLDIMGK 225 (358)
Q Consensus 150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~--g~~~~~~~v~~ll~~~g~ 225 (358)
+. .+++|+++.+.... +. ...+++. |++|....... ....+++. .+++..+.++.+++ |.
T Consensus 51 ~~------~~v~Dv~SvK~~i~----~~----~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~ 114 (197)
T PRK06444 51 YD------NNFVEISSVKWPFK----KY----SGKIVSIHPLFGPMSYNDGVHRTVIFINDISRDNYLNEINEMFR--GY 114 (197)
T ss_pred hC------CeEEeccccCHHHH----Hh----cCCEEecCCCCCCCcCcccccceEEEECCCCCHHHHHHHHHHHc--CC
Confidence 42 37999998877422 21 2356764 77763332211 12333332 25666788899988 78
Q ss_pred CeEEeCCcChHHHHHHHHHH
Q 018303 226 SRFYLGDVGNGAAMKLVVNM 245 (358)
Q Consensus 226 ~~~~~g~~g~~~~~k~~~n~ 245 (358)
+++.+.+..+......++.+
T Consensus 115 ~~~~~t~eeHD~~~A~ishL 134 (197)
T PRK06444 115 HFVEMTADEHDLLMSEIMVK 134 (197)
T ss_pred EEEEeCHHHHHHHHHHHHHH
Confidence 88888887777777666544
No 136
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.96 E-value=3e-08 Score=89.10 Aligned_cols=277 Identities=14% Similarity=0.075 Sum_probs=156.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHC-------CCcEEEEcCCccchh---hHHh------------------CCCccCCC
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKA-------GCDVTVWNRTKSKCD---PLIS------------------LGAKYQPS 119 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~-------g~~V~~~~~~~~~~~---~~~~------------------~g~~~~~~ 119 (358)
....+|+|||.|++|+++|+.+... ..+|..|-+...... .+.+ .++..++|
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 3446999999999999999998752 235666654322111 1211 12456789
Q ss_pred HHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChh---------HHHHHHHHHHhcCCeEecCCC
Q 018303 120 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD---------TSKLINGHIKATGASFLEAPV 190 (358)
Q Consensus 120 ~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~---------~~~~l~~~l~~~~~~~~~~~~ 190 (358)
+.++++++|++|..+| .+.+..++ +++...++++...|.++-|-.. ..+.+.+++. -...++..+.
T Consensus 99 l~ea~~dADilvf~vP-hQf~~~ic---~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lg-I~~~vL~GaN 173 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVP-HQFIPRIC---EQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALG-IPCSVLMGAN 173 (372)
T ss_pred HHHHhccCCEEEEeCC-hhhHHHHH---HHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhC-CCceeecCCc
Confidence 9999999999999998 78999999 8999999999999998655321 1223333331 1334565555
Q ss_pred CCCCCcCCCCceEEEecC-CHhHHHHHHHHHHHhcCCeEEeCCcC---hHHHHHHH--------------HHHHHHHHHH
Q 018303 191 SGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVG---NGAAMKLV--------------VNMIMGSMMA 252 (358)
Q Consensus 191 ~~~~~~~~~~~~~~~~~g-~~~~~~~v~~ll~~~g~~~~~~g~~g---~~~~~k~~--------------~n~~~~~~~~ 252 (358)
+..+.....-.-..+.+. +.+.-..+..+|+.-.+.++...+.. .+-++|-+ +|.-.+.+..
T Consensus 174 iA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~ 253 (372)
T KOG2711|consen 174 IASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRL 253 (372)
T ss_pred hHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHh
Confidence 544433222222222222 33333358888888877777766622 22223322 2334444556
Q ss_pred HHHHHHHHHHHc-CC-CHHHHH------HHHhhcccc--chhhh---ccccccccCCC--CCCCchhhHHHHHHHHHHHH
Q 018303 253 TFSEGLLHSEKV-GL-DPNVLV------EVVSQGAIS--APMYS---LKGPSMIESLY--PTAFPLKHQQKDLRLALGLA 317 (358)
Q Consensus 253 ~~~Ea~~l~~~~-G~-~~~~~~------~~~~~~~~~--s~~~~---~~~~~~~~~~~--~~~~~~~~~~kd~~~~~~~a 317 (358)
.+.|+..+++.. .- .++.+. +++....+. .+..+ ..+..+...+. -.|. ...+.-..+.+.+++
T Consensus 254 Gl~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq-~~QG~~Ta~~Vy~~L 332 (372)
T KOG2711|consen 254 GLLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQ-KLQGPATAKEVYELL 332 (372)
T ss_pred hHHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCC-cccCcHHHHHHHHHH
Confidence 667777666652 22 233222 222222111 11111 00110000000 0110 111233357788899
Q ss_pred HhcCC--CchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018303 318 ESVSQ--STPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 357 (358)
Q Consensus 318 ~~~gi--~~p~~~a~~~~~~~a~~~g~~~~d~~~~~~~~~~~ 357 (358)
++.++ ..|+..++++++. ++....++++.++.+
T Consensus 333 ~~~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~~ 367 (372)
T KOG2711|consen 333 QKKGLVEKFPLFTAVYKICY-------ERLPPQALLECLRNH 367 (372)
T ss_pred HHcChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhcc
Confidence 99998 7899999988774 344677788777653
No 137
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.94 E-value=4.3e-09 Score=96.32 Aligned_cols=112 Identities=22% Similarity=0.268 Sum_probs=84.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC--CCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~aDivi~~vp~~~~~~~~~ 144 (358)
.+.+++++|||+|.+|+.++..|+.+|.+|++++|++++.+.....|.... .++.+.++++|+||.++|.. ++
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~-----~i 223 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPAL-----VL 223 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChh-----hh
Confidence 456789999999999999999999999999999999877666555565433 35678889999999999742 23
Q ss_pred cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303 145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 188 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~ 188 (358)
+++.++.|+++.++||++....... + +..+..|+..+.+
T Consensus 224 --~~~~l~~~~~g~vIIDla~~pggtd--~-~~a~~~Gv~~~~~ 262 (296)
T PRK08306 224 --TKEVLSKMPPEALIIDLASKPGGTD--F-EYAEKRGIKALLA 262 (296)
T ss_pred --hHHHHHcCCCCcEEEEEccCCCCcC--e-eehhhCCeEEEEE
Confidence 3555678999999999977553322 2 3445566665543
No 138
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.91 E-value=2.9e-09 Score=87.08 Aligned_cols=95 Identities=19% Similarity=0.157 Sum_probs=68.2
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
.+.++++.|+|+|.+|+.+|+.|+..|.+|++++++|-+.-+....|.... +++++++.+|++|.++.. ++++
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~----~~vi-- 92 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGN----KDVI-- 92 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSS----SSSB--
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCC----cccc--
Confidence 567889999999999999999999999999999999876655555677654 799999999999998853 3344
Q ss_pred cccccccCCCCCEEEEccCCCh
Q 018303 147 KHGAASGMGPGKGYVDVSTVDG 168 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~~~ 168 (358)
..+.+..||+|+++.|.+....
T Consensus 93 ~~e~~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 93 TGEHFRQMKDGAILANAGHFDV 114 (162)
T ss_dssp -HHHHHHS-TTEEEEESSSSTT
T ss_pred CHHHHHHhcCCeEEeccCcCce
Confidence 3455678999999999976544
No 139
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.90 E-value=1.1e-08 Score=88.16 Aligned_cols=111 Identities=16% Similarity=0.221 Sum_probs=82.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCccCCCHHHHhh-cCCEEEEeeCChhhHhhhh
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAA-SCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~aDivi~~vp~~~~~~~~~ 144 (358)
++.+|+|+|+|+|+||+.+|+.|.+.|++|+++|+++++.+.+.+. +.... +.++++. +||+++.|.... ++
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~~~-----~I 98 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCALGG-----VI 98 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccccc-----cc
Confidence 5777899999999999999999999999999999998877766554 55544 3455554 799999776432 33
Q ss_pred cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
+++.++.++ ..+|+.-+++...+ ..-.+.|+++|+.+++
T Consensus 99 --~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 99 --NDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGILYAP 137 (200)
T ss_pred --CHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCEEeC
Confidence 344445554 56788777765544 5677888899998875
No 140
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.89 E-value=3.3e-08 Score=93.08 Aligned_cols=200 Identities=15% Similarity=0.091 Sum_probs=116.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCC------ccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT------KSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA 140 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~ 140 (358)
.+.+++|+|||+|++|.+.|..|+..|++|.+--|. .+..+.+.+.|..+ .++.|+++.||+|++.+|++ .
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~- 109 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-Q- 109 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-H-
Confidence 577899999999999999999999999999855443 23444444567654 68999999999999999977 4
Q ss_pred hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCCc-----CCCCceEEEe-c---C-C
Q 018303 141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKP-----AEDGQLIFLA-A---G-D 209 (358)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~-~---g-~ 209 (358)
++.+ .+++++.|++|+++.- |.|--+... ......++.++ -+|--.+... ...|.+.++. - + +
T Consensus 110 q~~v--~~~i~p~LK~Ga~L~f-sHGFni~~~---~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~ 183 (487)
T PRK05225 110 HSDV--VRAVQPLMKQGAALGY-SHGFNIVEV---GEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPK 183 (487)
T ss_pred HHHH--HHHHHhhCCCCCEEEe-cCCceeeeC---ceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCC
Confidence 5555 3889999999998763 344332211 11111233322 2232222211 1123333322 2 1 3
Q ss_pred HhHHHHHHHHHHHhcCC--eEEeCCcChHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHH
Q 018303 210 KSLYNTVAPLLDIMGKS--RFYLGDVGNGAAMKLV-VNMIMGSMMATFSE-GLLHSEKVGLDPNVLVEVV 275 (358)
Q Consensus 210 ~~~~~~v~~ll~~~g~~--~~~~g~~g~~~~~k~~-~n~~~~~~~~~~~E-a~~l~~~~G~~~~~~~~~~ 275 (358)
..+.+.+.....++|.. .+.-..........+. .+.++...++...+ .+..+.+.|.+|+.++..+
T Consensus 184 g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~ 253 (487)
T PRK05225 184 GEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLI 253 (487)
T ss_pred chHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 45677777888888876 1222222111112222 22223333322222 2333577899999887533
No 141
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.89 E-value=7.9e-09 Score=98.16 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=81.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
.+.+++|+|+|+|.||+.+|+.++.+|++|+++++++.+.......|... .+++++++.+|+||.++. +.+++
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG----~~~vI-- 281 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATG----NKDVI-- 281 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCC----CHHHH--
Confidence 35778999999999999999999999999999999987765555556554 478899999999998874 24455
Q ss_pred cccccccCCCCCEEEEccCCCh-hHHHHHHH
Q 018303 147 KHGAASGMGPGKGYVDVSTVDG-DTSKLING 176 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~ 176 (358)
+.+.+..|++|++++|.++... .+...+.+
T Consensus 282 ~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 282 TAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 3456788999999999988764 34444443
No 142
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.85 E-value=1.8e-08 Score=90.86 Aligned_cols=107 Identities=21% Similarity=0.293 Sum_probs=78.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--CCc-EEEEcCCccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKA--GCD-VTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~--g~~-V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
|+|||||+|.||+.+++.+... +++ +.++|+++++.+.+.+ .+...+.++++++.++|+|++|+| +.......
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~-~~~~~~~~-- 78 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECAS-VNAVEEVV-- 78 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCC-hHHHHHHH--
Confidence 6899999999999999999875 455 4579999887766554 355667889999899999999997 44555554
Q ss_pred cccccccCCCCCEEEEccCC---ChhHHHHHHHHHHhcCCe
Q 018303 147 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGAS 184 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~~~~~ 184 (358)
.. .++.|+.++..+.+ .....+.+.+..++.+..
T Consensus 79 -~~---al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 79 -PK---SLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred -HH---HHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 33 34567767766654 334456788888777754
No 143
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=98.84 E-value=1.4e-09 Score=98.33 Aligned_cols=158 Identities=11% Similarity=0.020 Sum_probs=122.8
Q ss_pred CCCCCCccccccCCCCCccccccCCCCCCCCCCCCcccccccccccCCCcCCCCCCeEEEEcCChhHHHHHHHHHHCCCc
Q 018303 16 SSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEDELPGRIGFLGMGIMGTPMAQNLLKAGCD 95 (358)
Q Consensus 16 ~~~~~~~~~~~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IgIIG~G~iG~~~a~~l~~~g~~ 95 (358)
++.-++-+++++.|+-+...+..++|.|......... ...-....++.+.|++|+|+.|++++.+...+|+.
T Consensus 132 ~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e--------~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~ 203 (435)
T KOG0067|consen 132 TADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVRE--------AACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFV 203 (435)
T ss_pred HHHHHHHHHHhhhcccchhhhhhcccceeechhhhhh--------hhhccccccccceeeeccccccceehhhhhcccce
Confidence 3344455666778888888888999988754321100 00001156778999999999999999999999999
Q ss_pred EEEEcCCccchhhHH-hCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHH
Q 018303 96 VTVWNRTKSKCDPLI-SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLI 174 (358)
Q Consensus 96 V~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l 174 (358)
|+.||+.... -+. ..|...+.+++|++-++|-+.+++..++..++++ +.--..+|+.|..++|++++..+++.+|
T Consensus 204 ~ifydp~~~~--g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~li--n~~tikqm~qGaflvnta~gglvdekaL 279 (435)
T KOG0067|consen 204 VIFYDPYLID--GIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELI--NDFTIKQMRQGAFLVNTARGGLVDEKAL 279 (435)
T ss_pred eeeecchhhh--hhhhhcccceecccchhhhhccceeeecccCccccccc--ccccceeecccceEeeecccccCChHHH
Confidence 9999975332 111 2356667789999999999999999999999999 6666788999999999999999999999
Q ss_pred HHHHHhcCCeE
Q 018303 175 NGHIKATGASF 185 (358)
Q Consensus 175 ~~~l~~~~~~~ 185 (358)
.++|+++.++.
T Consensus 280 aqaLk~G~i~~ 290 (435)
T KOG0067|consen 280 AQALKSGRIRG 290 (435)
T ss_pred HhhhccCceec
Confidence 99999876663
No 144
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.78 E-value=2.8e-08 Score=89.84 Aligned_cols=77 Identities=27% Similarity=0.383 Sum_probs=65.5
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.+++|+|||.| .||+.+|..|.+.|++|++|++... ++.++.++||+||++++.+..++..+
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~- 220 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADW- 220 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhh-
Confidence 6789999999996 9999999999999999999987532 68899999999999998765444332
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
+++|+++||++..
T Consensus 221 --------ik~GaiVIDvgin 233 (301)
T PRK14194 221 --------LKPGAVVIDVGIN 233 (301)
T ss_pred --------ccCCcEEEEeccc
Confidence 7899999999753
No 145
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.73 E-value=9.4e-08 Score=90.68 Aligned_cols=94 Identities=17% Similarity=0.091 Sum_probs=77.5
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
.+.+++|+|+|+|.||..+++.++.+|.+|+++++++.+.+.....|+... +.+++++.+|+||.++.. .+++
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~----~~~i-- 271 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGN----KDII-- 271 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCC----HHHH--
Confidence 457889999999999999999999999999999999888777777777544 567888999999998853 3344
Q ss_pred cccccccCCCCCEEEEccCCC
Q 018303 147 KHGAASGMGPGKGYVDVSTVD 167 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~~ 167 (358)
+...+..+++|.+++|+++..
T Consensus 272 ~~~~l~~mk~GgilvnvG~~~ 292 (413)
T cd00401 272 TGEHFEQMKDGAIVCNIGHFD 292 (413)
T ss_pred HHHHHhcCCCCcEEEEeCCCC
Confidence 244467899999999998764
No 146
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.71 E-value=4.1e-08 Score=90.84 Aligned_cols=111 Identities=14% Similarity=0.219 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHhC----C--CccCCCHHHHhhcCCEEEEeeCChhh
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAASCDVTFAMLADPES 139 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~aDivi~~vp~~~~ 139 (358)
...++|+|||+|.||..+++.+.. .+ .+|.+|+|++++.+.+.+. + +....+.++++++||+|+.++|.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~-- 200 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST-- 200 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence 345799999999999999986654 44 6899999999887776553 3 445678899999999998888743
Q ss_pred HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
+.++ . .+.+++|+ +||+.........++...+..+...|+|
T Consensus 201 -~pvl---~--~~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD 241 (314)
T PRK06141 201 -EPLV---R--GEWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVD 241 (314)
T ss_pred -CCEe---c--HHHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEc
Confidence 4555 1 14578998 5555555444444555555444334444
No 147
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.70 E-value=6.4e-07 Score=76.13 Aligned_cols=197 Identities=15% Similarity=0.117 Sum_probs=132.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhH-----------HhCC--------------CccCCCHHHHhhc
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG--------------AKYQPSPDEVAAS 126 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-----------~~~g--------------~~~~~~~~~~~~~ 126 (358)
+|+|+|.|.+|+..|-.++..|++|..||..++..... .+.| +..+.+++|+.++
T Consensus 5 ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~ 84 (313)
T KOG2305|consen 5 KIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKG 84 (313)
T ss_pred ceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhh
Confidence 79999999999999999999999999999987654321 1111 3457799999999
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEe
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA 206 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (358)
+=.|-.|+|..-..+.-+| +++-+...+..++- .|+ +......+.+.+.++.-..+.+|+...- .-+++-++
T Consensus 85 Ai~iQEcvpE~L~lkk~ly--~qlD~i~d~~tIla-SST-St~mpS~~s~gL~~k~q~lvaHPvNPPy----fiPLvElV 156 (313)
T KOG2305|consen 85 AIHIQECVPEDLNLKKQLY--KQLDEIADPTTILA-SST-STFMPSKFSAGLINKEQCLVAHPVNPPY----FIPLVELV 156 (313)
T ss_pred hhhHHhhchHhhHHHHHHH--HHHHHhcCCceEEe-ccc-cccChHHHhhhhhhhhheeEecCCCCCc----ccchheec
Confidence 9999999998888877763 44444444444443 333 3333334555555544345555543210 01111111
Q ss_pred c---CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018303 207 A---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP 283 (358)
Q Consensus 207 ~---g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~ 283 (358)
. .+++.+++..++.+.+|.+++.....-.+ ++.|-+- .+.++|..+++...++...+++..++++.|...
T Consensus 157 PaPwTsp~tVdrt~~lM~sigq~pV~l~rei~G----f~lnriq---~Ailne~wrLvasGil~v~dvD~VmS~GLG~RY 229 (313)
T KOG2305|consen 157 PAPWTSPDTVDRTRALMRSIGQEPVTLKREILG----FALNRIQ---YAILNETWRLVASGILNVNDVDAVMSAGLGPRY 229 (313)
T ss_pred cCCCCChhHHHHHHHHHHHhCCCCccccccccc----ceecccc---HHHHHHHHHHHHccCcchhhHHHHHhcCCCcch
Confidence 1 36888999999999999988876652212 2223333 345679999999999999999999998765543
No 148
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.68 E-value=1.4e-07 Score=74.50 Aligned_cols=108 Identities=17% Similarity=0.256 Sum_probs=80.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--CCcEE-EEcCCccchhhHH-hCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKA--GCDVT-VWNRTKSKCDPLI-SLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~--g~~V~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~ 144 (358)
++|||||+|.+|+.....+... ++++. ++|+++++.+.+. ..++..++|.+++++ +.|+|++++|.....+.+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 3799999999999999998876 45554 6899988777654 357888899999998 6999999998655554443
Q ss_pred cccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303 145 CGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF 185 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~ 185 (358)
..++.|..++.- -.....+.+++.+..++.+..+
T Consensus 81 -------~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 81 -------KALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp -------HHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred -------HHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 334556655544 2346677788888888776543
No 149
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.65 E-value=2.7e-08 Score=80.37 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=68.8
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCccchhhHHhCC------CccCCCHHHHhhcCCEEEEeeCChhh
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLG------AKYQPSPDEVAASCDVTFAMLADPES 139 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~aDivi~~vp~~~~ 139 (358)
+++++++.|||+|.+|+.++..|...|.+ |++++|+.++.+.+.+.- ....+++.+.+.++|+||.++|.+..
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 56788999999999999999999999987 999999998887776531 22345677778999999999986543
Q ss_pred HhhhhcccccccccCCCC-CEEEEccC
Q 018303 140 AMDVACGKHGAASGMGPG-KGYVDVST 165 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~-~~vi~~s~ 165 (358)
.+ .++.+....+. .+++|++.
T Consensus 89 ---~i--~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 89 ---II--TEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp ---SS--THHHHTTTCHHCSEEEES-S
T ss_pred ---cc--CHHHHHHHHhhhhceecccc
Confidence 33 23333333222 48999964
No 150
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.60 E-value=1.6e-07 Score=83.24 Aligned_cols=197 Identities=17% Similarity=0.186 Sum_probs=114.5
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
-+.+++|+|||+|+.|.+-|..|+..|.+|++--|.... .+...+.|..+ .+.+|+++.+|+|++.+| +..-..++
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~P-De~q~~vy- 91 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLP-DEQQKEVY- 91 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCc-hhhHHHHH-
Confidence 356789999999999999999999999999987765444 45556667775 489999999999999998 45556666
Q ss_pred ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe-cCCCCCCCC-----cCCCCceEEEec--C-CHhHHHHH
Q 018303 146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKK-----PAEDGQLIFLAA--G-DKSLYNTV 216 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~--g-~~~~~~~v 216 (358)
.+++.+.|++|+.+. -+.|.-+....+ .....+.++ -+|-..+.. ....|.+.++.- + +-.+.+.+
T Consensus 92 -~~~I~p~Lk~G~aL~-FaHGfNihf~~i---~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~A 166 (338)
T COG0059 92 -EKEIAPNLKEGAALG-FAHGFNIHFGLI---VPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIA 166 (338)
T ss_pred -HHHhhhhhcCCceEE-eccccceeccee---cCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHH
Confidence 357888899998553 344433222111 111222222 222211111 112233333322 1 34567777
Q ss_pred HHHHHHhcCC---eEEeCCcChHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018303 217 APLLDIMGKS---RFYLGDVGNGAAMKLV-VN-MIMGSMMATFSEGLLHSEKVGLDPNVLV 272 (358)
Q Consensus 217 ~~ll~~~g~~---~~~~g~~g~~~~~k~~-~n-~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 272 (358)
......+|.. ++.. ......-..+. .+ .+.+.+..++.-++..+.+.|.+|+.++
T Consensus 167 la~AkgiGg~RaGvieT-TFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~Ay 226 (338)
T COG0059 167 LAYAKGIGGTRAGVIET-TFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAY 226 (338)
T ss_pred HHHHHhcCCCccceEee-eeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 7888888743 2211 11100111111 11 2223334444455555678898887554
No 151
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.60 E-value=2.2e-07 Score=84.27 Aligned_cols=76 Identities=30% Similarity=0.378 Sum_probs=63.8
Q ss_pred CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEc-CCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303 67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWN-RTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~ 144 (358)
++.+++|+||| .|.||..+|..|.+.|++|++|+ |++ ++++++++||+|+++++.+..++..
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~- 218 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGD- 218 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchh-
Confidence 57899999999 99999999999999999999995 543 4678899999999999876543332
Q ss_pred cccccccccCCCCCEEEEccCC
Q 018303 145 CGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
.+++|+++||++..
T Consensus 219 --------~lk~GavVIDvGin 232 (296)
T PRK14188 219 --------WIKPGATVIDVGIN 232 (296)
T ss_pred --------eecCCCEEEEcCCc
Confidence 27899999999753
No 152
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.59 E-value=8.8e-08 Score=78.89 Aligned_cols=101 Identities=19% Similarity=0.308 Sum_probs=76.8
Q ss_pred EEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC--------------CCHHHHhhcCCEEEEeeCChh
Q 018303 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--------------PSPDEVAASCDVTFAMLADPE 138 (358)
Q Consensus 73 IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~--------------~~~~~~~~~aDivi~~vp~~~ 138 (358)
|.|+|+|.||..+|..|++.|++|.++.|++ ..+.+.+.|+... .+..+....+|+|++|+ +..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v-Ka~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV-KAY 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S-SGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe-ccc
Confidence 7899999999999999999999999999987 6666665543221 11224567899999999 789
Q ss_pred hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHH
Q 018303 139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 179 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~ 179 (358)
+++.++ +.+.+.+.+++.++-..++... .+.+.+.+.
T Consensus 79 ~~~~~l---~~l~~~~~~~t~iv~~qNG~g~-~~~l~~~~~ 115 (151)
T PF02558_consen 79 QLEQAL---QSLKPYLDPNTTIVSLQNGMGN-EEVLAEYFP 115 (151)
T ss_dssp GHHHHH---HHHCTGEETTEEEEEESSSSSH-HHHHHCHST
T ss_pred chHHHH---HHHhhccCCCcEEEEEeCCCCc-HHHHHHHcC
Confidence 999999 7788888888888877777543 345655553
No 153
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.53 E-value=5.1e-07 Score=76.78 Aligned_cols=94 Identities=19% Similarity=0.302 Sum_probs=72.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--CCc-EEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKA--GCD-VTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~--g~~-V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
++|||||+|.||+.+.+.+... +++ +.+||++.++...+... +....++++|++++.|+++.|. .+++++...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaA-S~~Av~e~~-- 77 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAA-SPEAVREYV-- 77 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeC-CHHHHHHHh--
Confidence 4799999999999999999853 343 77899999888766543 4445589999999999999999 578888777
Q ss_pred cccccccCCCCCEEEEccCCChhHH
Q 018303 147 KHGAASGMGPGKGYVDVSTVDGDTS 171 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~~~~~~ 171 (358)
. +.|+.|.-+|-+|.|...++
T Consensus 78 -~---~~L~~g~d~iV~SVGALad~ 98 (255)
T COG1712 78 -P---KILKAGIDVIVMSVGALADE 98 (255)
T ss_pred -H---HHHhcCCCEEEEechhccCh
Confidence 3 34567776666677766644
No 154
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.53 E-value=1.9e-07 Score=88.18 Aligned_cols=96 Identities=22% Similarity=0.315 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCc---cC---CCHHHHhhcCCEEEEeeCCh-hh
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAK---YQ---PSPDEVAASCDVTFAMLADP-ES 139 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~---~~---~~~~~~~~~aDivi~~vp~~-~~ 139 (358)
....+|.|||+|.+|...++.+...|.+|.++|+++++.+.+... +.. .. .++.+.++++|+||.+++.+ ..
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 456789999999999999999999999999999998776665432 221 11 24566788999999998532 22
Q ss_pred HhhhhcccccccccCCCCCEEEEccC
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~ 165 (358)
...++ +++.+..|+++.+|||++-
T Consensus 245 ~p~li--t~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 245 APKLV--SNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCcCc--CHHHHhcCCCCCEEEEEec
Confidence 34445 4667788999999999974
No 155
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.49 E-value=2.6e-07 Score=85.38 Aligned_cols=94 Identities=22% Similarity=0.293 Sum_probs=68.2
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC-CCcc--CCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GAKY--QPSPDEVAASCDVTFAMLADPESAMDV 143 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-g~~~--~~~~~~~~~~aDivi~~vp~~~~~~~~ 143 (358)
..+++|+|||+|.||..+++.+...| .+|++++|++++...+.+. |... .+++.+.+.++|+||.++|.+.. ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 46789999999999999999998865 6899999998876655543 4322 23456778899999999985543 444
Q ss_pred hcccccccccC-CCCCEEEEccC
Q 018303 144 ACGKHGAASGM-GPGKGYVDVST 165 (358)
Q Consensus 144 ~~~~~~~~~~l-~~~~~vi~~s~ 165 (358)
+ +...... .++.++||++.
T Consensus 255 ~---~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 255 V---ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred H---HHHHhhCCCCCeEEEEeCC
Confidence 4 3332222 36789999975
No 156
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.47 E-value=7.2e-07 Score=80.86 Aligned_cols=115 Identities=24% Similarity=0.270 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC----CCccCCCHHHH-hhcCCEEEEeeCChh--hH
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEV-AASCDVTFAMLADPE--SA 140 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~~~~~~~~~-~~~aDivi~~vp~~~--~~ 140 (358)
..++++.|+|+|.+|++++..|...|++|.+++|++++.+.+.+. +.....+.++. ..++|+||.++|... ..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 346789999999999999999999999999999998776655432 21112233333 357999999998642 12
Q ss_pred hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303 141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 188 (358)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~ 188 (358)
....+ ....++++.+++|++..++.+ .+.+..++.|..+++.
T Consensus 195 ~~~~~----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG 236 (270)
T TIGR00507 195 DEPPV----PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDG 236 (270)
T ss_pred CCCCC----CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCC
Confidence 11110 124578899999998877655 4777777777766653
No 157
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.44 E-value=8.3e-07 Score=79.76 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=64.2
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.+++|+|||. |.||..+|..|.+.|+.|++|... +.++.+.+++||+||.+++.+..++..
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~-- 218 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKE-- 218 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHH--
Confidence 578899999999 999999999999999999999321 126788999999999999876554433
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
.+++|+++||++..
T Consensus 219 -------~ik~GavVIDvgin 232 (284)
T PRK14179 219 -------FVKEGAVVIDVGMN 232 (284)
T ss_pred -------HccCCcEEEEecce
Confidence 38899999999744
No 158
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.44 E-value=8.2e-07 Score=83.11 Aligned_cols=109 Identities=21% Similarity=0.306 Sum_probs=81.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhCC---C-------ccCCCHHHHhhcCCEEEEeeCChh
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLG---A-------KYQPSPDEVAASCDVTFAMLADPE 138 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~g---~-------~~~~~~~~~~~~aDivi~~vp~~~ 138 (358)
+|+|.|||+|.+|+.+|..|++.| .+|++.||+.++++++.... + .-...+.+++++.|+||.+.| +.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p-~~ 79 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAP-PF 79 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCC-ch
Confidence 368999999999999999999988 99999999998888775542 1 223356788999999999998 44
Q ss_pred hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303 139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 186 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~ 186 (358)
....++ + ..++.|..++|+|-..+.. .++.+..++.|+.++
T Consensus 80 ~~~~i~---k---a~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v 120 (389)
T COG1748 80 VDLTIL---K---ACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAV 120 (389)
T ss_pred hhHHHH---H---HHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEE
Confidence 444555 2 3466788888887766654 566666666665433
No 159
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.40 E-value=1.7e-06 Score=68.64 Aligned_cols=112 Identities=24% Similarity=0.305 Sum_probs=71.2
Q ss_pred CeEEEEcC-ChhHHHHHHHHHH-CCCcEE-EEcCCccc-h----hhH---HhCCCccCCCHHHHhhcCCEEEEeeCChhh
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLK-AGCDVT-VWNRTKSK-C----DPL---ISLGAKYQPSPDEVAASCDVTFAMLADPES 139 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~-~g~~V~-~~~~~~~~-~----~~~---~~~g~~~~~~~~~~~~~aDivi~~vp~~~~ 139 (358)
|||+|+|+ |+||+.+++.+.+ .++++. +++++++. . ..+ ...++...++++++++.+|++|-.+ .+..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 48999999 9999999999988 678855 57777621 1 111 1235677889999999999999998 6777
Q ss_pred HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCC
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 190 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~ 190 (358)
+...+ +.. ++.+.-+|-.++|.........+.+.+. +.++-+|.
T Consensus 80 ~~~~~---~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a~N 123 (124)
T PF01113_consen 80 VYDNL---EYA---LKHGVPLVIGTTGFSDEQIDELEELAKK-IPVLIAPN 123 (124)
T ss_dssp HHHHH---HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-SS
T ss_pred hHHHH---HHH---HhCCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEeCC
Confidence 77776 433 3447777776777654443444444333 44544443
No 160
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.40 E-value=1.1e-06 Score=81.62 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=71.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHC--CCcEEEEcCCccchhhHHh----CC--CccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLIS----LG--AKYQPSPDEVAASCDVTFAMLADPESA 140 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~----~g--~~~~~~~~~~~~~aDivi~~vp~~~~~ 140 (358)
...++||||+|.+|...++.+... ..+|.+|||++++.+.+.+ .+ +..+.+.++++++||+|++|+|..
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~--- 203 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR--- 203 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---
Confidence 346899999999999988887652 3679999999988776544 24 345789999999999999999743
Q ss_pred hhhhcccccccccCCCCCEEEEccCCChh
Q 018303 141 MDVACGKHGAASGMGPGKGYVDVSTVDGD 169 (358)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~ 169 (358)
+.++ + .+.+++|++|..++.-.|.
T Consensus 204 ~P~~--~---~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 204 KPVV--K---ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred CcEe--c---HHHcCCCCEEEecCCCCcc
Confidence 3444 1 2357999999988776553
No 161
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=7.3e-06 Score=69.88 Aligned_cols=193 Identities=16% Similarity=0.124 Sum_probs=125.3
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEE-EcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
+...+.+||||.|+.|++...+....++.... ..|+++..+.+.+--+...-+.+...+-.+++++-+|+. ....+.
T Consensus 7 ~~~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~va- 84 (289)
T COG5495 7 RPARVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVA- 84 (289)
T ss_pred cceeeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHH-
Confidence 34457899999999999966666555565543 456766666555432222223444444567888888754 333333
Q ss_pred ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCC--C-CCCCcC--CCCceEEEecCCHhHHHHHHHH
Q 018303 146 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APV--S-GSKKPA--EDGQLIFLAAGDKSLYNTVAPL 219 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~--~-~~~~~~--~~~~~~~~~~g~~~~~~~v~~l 219 (358)
. ...-.||+++++||..... .+.+.+...|..-.+ +|. | +.+... -.++.+.+..+|+.....++.+
T Consensus 85 --a--~~~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~l 157 (289)
T COG5495 85 --A--TSLNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSL 157 (289)
T ss_pred --H--hcccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHH
Confidence 1 1235699999999876554 344445444432222 232 2 222222 2344445556777788899999
Q ss_pred HHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018303 220 LDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN 269 (358)
Q Consensus 220 l~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~ 269 (358)
...+|.+++.+-+ +.-..++...+...++.+..+.++..+.+..|+|.-
T Consensus 158 a~emgg~~f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~ 206 (289)
T COG5495 158 ALEMGGEPFCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQP 206 (289)
T ss_pred HHHhCCCceeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCc
Confidence 9999998876654 447778888888888888899999999999998753
No 162
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.37 E-value=3.6e-06 Score=77.14 Aligned_cols=109 Identities=13% Similarity=0.142 Sum_probs=73.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC-CCcEEE-EcCCc-cchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKA-GCDVTV-WNRTK-SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~-g~~V~~-~~~~~-~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
..||+|||+|+||+.+++.+... ++++.+ +++++ ++.. ...++....+.++++.+.|+|++|+|.....+...
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~-- 78 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQA-- 78 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHH--
Confidence 36999999999999999999765 788764 78875 3222 12244445577788889999999998766544443
Q ss_pred cccccccCCCCCEEEEccCC---ChhHHHHHHHHHHh-cCCeEec
Q 018303 147 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKA-TGASFLE 187 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~-~~~~~~~ 187 (358)
+.+..|..+|++.-. .+...+.+.++.++ +++.++.
T Consensus 79 -----~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~ 118 (324)
T TIGR01921 79 -----PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS 118 (324)
T ss_pred -----HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 446788888877432 22345566666664 3444443
No 163
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.37 E-value=1.8e-06 Score=78.62 Aligned_cols=117 Identities=25% Similarity=0.205 Sum_probs=80.2
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC-C----CccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-G----AKYQPSPDEVAASCDVTFAMLADPESA 140 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-g----~~~~~~~~~~~~~aDivi~~vp~~~~~ 140 (358)
...++++.|+|+|.+|++++..|...| .+|++++|+.++.+.+.+. + +....+..+.+.++|+||.++|....-
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~ 199 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG 199 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence 456789999999999999999999999 7899999998887766542 1 111113346678899999999865432
Q ss_pred hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
..-. ..-....++++.+++|+.-.+.. + .+.+..++.|..+++
T Consensus 200 ~~~~--~~~~~~~l~~~~~v~DivY~P~~-T-~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 200 ELPL--PPLPLSLLRPGTIVYDMIYGPLP-T-PFLAWAKAQGARTID 242 (278)
T ss_pred CCCC--CCCCHHHcCCCCEEEEeecCCCC-C-HHHHHHHHCcCeecC
Confidence 1100 01112457789999999764433 2 466666666665544
No 164
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.35 E-value=3.2e-06 Score=76.31 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=69.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHC-CCcEEE-EcCCcc--chhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKA-GCDVTV-WNRTKS--KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V~~-~~~~~~--~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
+||||||+|+||+.+++.+... +.++.+ +++... +.......+...+++++++..+.|+|+.|+|.. ......
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~e~~-- 78 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALKEHV-- 78 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHHHHH--
Confidence 6899999999999999999875 566543 444322 111111124566778888745699999999744 444444
Q ss_pred cccccccCCCCCEEEEccCC---ChhHHHHHHHHHHhcCCe
Q 018303 147 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGAS 184 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~~~~~ 184 (358)
...++.|..++..+.+ .....+.+.+..++.|..
T Consensus 79 ----~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 79 ----VPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred ----HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 2346678777766554 233356677777777654
No 165
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.34 E-value=2.9e-06 Score=75.09 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=75.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC---CcE-EEEcCCccchhhHHhCCCccCCCHHHH-hhcCCEEEEeeCChhhHhhhhc
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAG---CDV-TVWNRTKSKCDPLISLGAKYQPSPDEV-AASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g---~~V-~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~aDivi~~vp~~~~~~~~~~ 145 (358)
+||||||+|.||+.+++.+...+ +++ .+++|++++.+.+... .....+++++ ...+|+|+.|.+ ...+++..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~-~~av~e~~- 79 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAG-QQAIAEHA- 79 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCC-HHHHHHHH-
Confidence 58999999999999999997642 443 4578877666666544 6678899997 578999999994 77777776
Q ss_pred ccccccccCCCCCEEEEccCCChhH---HHHHHHHHHhcC
Q 018303 146 GKHGAASGMGPGKGYVDVSTVDGDT---SKLINGHIKATG 182 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~~~~---~~~l~~~l~~~~ 182 (358)
..+ |..|.-++-.|-+...| .+.+.+..+..+
T Consensus 80 --~~i---L~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g 114 (267)
T PRK13301 80 --EGC---LTAGLDMIICSAGALADDALRARLIAAAEAGG 114 (267)
T ss_pred --HHH---HhcCCCEEEEChhHhcCHHHHHHHHHHHHhCC
Confidence 433 56677777777665543 556666666554
No 166
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.32 E-value=2.9e-06 Score=78.07 Aligned_cols=95 Identities=16% Similarity=0.215 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHhC----CCcc-CCCHHHHhhcCCEEEEeeCChhhH
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL----GAKY-QPSPDEVAASCDVTFAMLADPESA 140 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~aDivi~~vp~~~~~ 140 (358)
...++++|||+|.+|+..++.+.. .+ .+|.+|+|++++.+.+.+. ++.. +.+.++++.++|+|+.|+|.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~--- 199 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR--- 199 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---
Confidence 445799999999999999999975 55 4699999999887766542 2222 468889999999999999844
Q ss_pred hhhhcccccccccCCCCCEEEEccCCChhHH
Q 018303 141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTS 171 (358)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~ 171 (358)
+.++ .. .++||++|..++.-.|...
T Consensus 200 ~Pl~---~~---~~~~g~hi~~iGs~~p~~~ 224 (304)
T PRK07340 200 TPVY---PE---AARAGRLVVAVGAFTPDMA 224 (304)
T ss_pred Ccee---Cc---cCCCCCEEEecCCCCCCcc
Confidence 3555 22 4789999999887666433
No 167
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.32 E-value=4.2e-06 Score=75.21 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=67.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 147 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~ 147 (358)
++|+|+|+ |+||+.+++.+... ++++. ++|++++........++..+.+++++++++|+|+.++| +......+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~-p~~~~~~~--- 77 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT-PEATLENL--- 77 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC-HHHHHHHH---
Confidence 68999998 99999999998864 67765 48887765443323355567899999988999998886 44445444
Q ss_pred ccccccCCCCCEEEEccCC-ChhHHHHHHH
Q 018303 148 HGAASGMGPGKGYVDVSTV-DGDTSKLING 176 (358)
Q Consensus 148 ~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~ 176 (358)
...++.|..++..+++ ...+.+.+.+
T Consensus 78 ---~~al~~G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 78 ---EFALEHGKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred ---HHHHHcCCCEEEECCCCCHHHHHHHHH
Confidence 2345667666644444 3444445555
No 168
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.31 E-value=7.9e-05 Score=65.45 Aligned_cols=158 Identities=11% Similarity=0.080 Sum_probs=101.9
Q ss_pred CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303 113 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192 (358)
Q Consensus 113 g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 192 (358)
|+..++|-.|+++++|++|+-+|....+..++ +++.+.+++|+++.|+++.++..--.+.+.+.+..+.+.+... +
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HP-a 201 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHP-G 201 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCC-C
Confidence 56778888899999999999999999899999 9999999999999999999988666666666555444433221 1
Q ss_pred CCCcCCCCceEEEec-CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHH
Q 018303 193 SKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHS-EKVGLDPNV 270 (358)
Q Consensus 193 ~~~~~~~~~~~~~~~-g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~-~~~G~~~~~ 270 (358)
..|... ++..+..+ .++++++++.++.++.++.++.+...-.+....+. ..+....++++.+-...+ +-.|.+.+.
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMg-S~VTAv~~aGiL~Y~~~~t~IlgAP~~m 279 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMC-SAVTAIVYAGLLAYRDAVTKILGAPADF 279 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 122222 23322222 38999999999999999998876542112222221 222233333333433332 336666665
Q ss_pred HHHHHh
Q 018303 271 LVEVVS 276 (358)
Q Consensus 271 ~~~~~~ 276 (358)
+...+.
T Consensus 280 iq~qa~ 285 (340)
T TIGR01723 280 AQMMAD 285 (340)
T ss_pred HHHHHH
Confidence 544433
No 169
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.31 E-value=1.2e-05 Score=60.49 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhccccccccCCCCC--CCchhhHHHHHHH
Q 018303 235 NGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLRL 312 (358)
Q Consensus 235 ~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~ 312 (358)
.++..|++.|.+....++.++|...+|++.|+|..++.+.+.... ++...-+.| |+....+.||...
T Consensus 3 ~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~-----------ri~~~~~~pg~g~GG~ClpkD~~~ 71 (96)
T PF00984_consen 3 EAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDP-----------RIGPHYLRPGPGFGGSCLPKDPYA 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTST-----------TTTSSS-S-SSS--SSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCc-----------ccccccCCCCCCCCCcchhhhHHH
Confidence 588999999999999999999999999999999999999988642 222222233 4556789999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHH
Q 018303 313 ALGLAESVSQSTPIAAAANELYK 335 (358)
Q Consensus 313 ~~~~a~~~gi~~p~~~a~~~~~~ 335 (358)
+...++++|.+.++++++.+...
T Consensus 72 L~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 72 LIYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhcC
Confidence 99999999999999998887654
No 170
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.30 E-value=3.5e-06 Score=76.76 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=79.1
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-----C---CccCCCHHHHhhcCCEEEEeeCCh
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-----G---AKYQPSPDEVAASCDVTFAMLADP 137 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-----g---~~~~~~~~~~~~~aDivi~~vp~~ 137 (358)
...++++.|||+|.+|++++..|...|. +|+++||+.++.+.+.+. . +....+..+.+.++|+||.++|..
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 3556799999999999999999999997 799999998887776542 1 111234455678899999999854
Q ss_pred hhHh-h-hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 138 ESAM-D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 138 ~~~~-~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
..-. . -+ + ...++++.+++|+.-.+..+ .+.+..+++|...++
T Consensus 204 m~~~~~~~~--~---~~~l~~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 204 MAKHPGLPL--P---AELLRPGLWVADIVYFPLET--ELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCCCCC--C---HHHcCCCcEEEEeeeCCCCC--HHHHHHHHCCCeEec
Confidence 3211 1 11 1 13467888999997655443 466666666655544
No 171
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.30 E-value=8.5e-05 Score=65.16 Aligned_cols=155 Identities=13% Similarity=0.103 Sum_probs=102.2
Q ss_pred CCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec---CC
Q 018303 113 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE---AP 189 (358)
Q Consensus 113 g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~---~~ 189 (358)
|+..++|-.|+++++|++++-+|....+..++ +++.+.+++|++|.|+++.++...-.+.+.+.+..+.+.+ +.
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56778888899999999999999999899999 9999999999999999999988666665556555443333 33
Q ss_pred CCCCCCcCCCCceEEEec-CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCC
Q 018303 190 VSGSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHS-EKVGLD 267 (358)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~-g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~-~~~G~~ 267 (358)
+.+.+ |+...-.+ .+++.++++.++.++.++.++.+...-.+....+. ..+....++++.+-...+ +-.|.+
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMg-S~VTAv~~aGiL~Y~~~~tqIlgAP 278 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMC-SAVTAIVYAGILAYRDAVTQILGAP 278 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHH-HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33333 33322111 28899999999999999998877552112222222 222333333333443333 336666
Q ss_pred HHHHHHHHh
Q 018303 268 PNVLVEVVS 276 (358)
Q Consensus 268 ~~~~~~~~~ 276 (358)
.+.+...+.
T Consensus 279 ~~mie~qa~ 287 (342)
T PRK00961 279 ADFAQMMAD 287 (342)
T ss_pred HHHHHHHHH
Confidence 665544433
No 172
>PLN00203 glutamyl-tRNA reductase
Probab=98.29 E-value=1e-06 Score=86.26 Aligned_cols=70 Identities=26% Similarity=0.392 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--CC----ccCCCHHHHhhcCCEEEEeeCCh
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--GA----KYQPSPDEVAASCDVTFAMLADP 137 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--g~----~~~~~~~~~~~~aDivi~~vp~~ 137 (358)
+.+++|+|||+|.||..+++.|...|. +|++++|++++.+.+.+. +. ...++..+++.++|+||.|+|.+
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 557899999999999999999999996 699999999888777653 22 12346677889999999998643
No 173
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.27 E-value=4.1e-06 Score=77.94 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=71.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHh-----CCC--ccCCCHHHHhhcCCEEEEeeCChhh
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS-----LGA--KYQPSPDEVAASCDVTFAMLADPES 139 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~-----~g~--~~~~~~~~~~~~aDivi~~vp~~~~ 139 (358)
..++++|||+|.+|+..+..+.. .+ .+|.+|+|++++.+.+.+ .++ ..+.+.+++++++|+|+.|+|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 45789999999999999988754 45 478999999988776654 133 34678899999999999999844
Q ss_pred HhhhhcccccccccCCCCCEEEEccCCChh
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVSTVDGD 169 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~ 169 (358)
+.++ . ..+++|++|+.++.-.|.
T Consensus 204 -~p~i---~---~~l~~G~hV~~iGs~~p~ 226 (325)
T PRK08618 204 -TPVF---S---EKLKKGVHINAVGSFMPD 226 (325)
T ss_pred -Ccch---H---HhcCCCcEEEecCCCCcc
Confidence 3455 2 567999999988776553
No 174
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.27 E-value=3.8e-06 Score=70.14 Aligned_cols=80 Identities=23% Similarity=0.317 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcCChh-HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.+++|.|||+|.| |..+++.|.+.|.+|.+++|+. .++.+.+.++|+||.+++.+. ++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii- 101 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LV- 101 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----ee-
Confidence 578899999999997 8889999999999999999863 356678999999999997542 44
Q ss_pred ccccccccCCCCCEEEEccCCChh
Q 018303 146 GKHGAASGMGPGKGYVDVSTVDGD 169 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~~~ 169 (358)
+.+ .++++.++||++....+
T Consensus 102 -~~~---~~~~~~viIDla~prdv 121 (168)
T cd01080 102 -KGD---MVKPGAVVIDVGINRVP 121 (168)
T ss_pred -cHH---HccCCeEEEEccCCCcc
Confidence 222 36778999999765433
No 175
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.22 E-value=4.1e-06 Score=76.86 Aligned_cols=93 Identities=8% Similarity=0.089 Sum_probs=71.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHC-C-CcEEEEcCCccchhhHHhC-----C--CccCCCHHHHhhcCCEEEEeeCChhh
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKA-G-CDVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPES 139 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~-g-~~V~~~~~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivi~~vp~~~~ 139 (358)
..+++||||+|.+|...++.+... . -+|.+|+|++++.+.+.+. + +..+.+.++++++||+|+.++|..
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~-- 193 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD-- 193 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--
Confidence 346899999999999999998763 3 4699999999987766432 3 445679999999999999999743
Q ss_pred HhhhhcccccccccCCCCCEEEEccCCChh
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVSTVDGD 169 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~ 169 (358)
+.++ + .++++||.+|.-++.-.|.
T Consensus 194 -~P~~--~---~~~l~pg~hV~aiGs~~p~ 217 (301)
T PRK06407 194 -TPIF--N---RKYLGDEYHVNLAGSNYPN 217 (301)
T ss_pred -CcEe--c---HHHcCCCceEEecCCCCCC
Confidence 3555 2 2367899888877666553
No 176
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.22 E-value=9.2e-06 Score=76.15 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=80.5
Q ss_pred CCeEEEEcCChhH-HHHHHHHHHCCC---cEEEEcCCccchhhHHhC-CC-ccCCCHHHHhhc--CCEEEEeeCChhhHh
Q 018303 70 PGRIGFLGMGIMG-TPMAQNLLKAGC---DVTVWNRTKSKCDPLISL-GA-KYQPSPDEVAAS--CDVTFAMLADPESAM 141 (358)
Q Consensus 70 ~~~IgIIG~G~iG-~~~a~~l~~~g~---~V~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~~--aDivi~~vp~~~~~~ 141 (358)
.+||||||+|.++ ...+..+...+. -|.++|+++++++.+.+. ++ ..+++.+++++. .|+|++++|...+.+
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e 82 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE 82 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence 4689999999666 458888888763 356789999887776653 55 377899999986 599999999776666
Q ss_pred hhhcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303 142 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF 185 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~ 185 (358)
.+. ..++.|+.|+.- -.....+.+++.+..++.+..+
T Consensus 83 ~~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 83 LAL-------AALEAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred HHH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 665 457788888765 2345566777888887765443
No 177
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=98.21 E-value=6.5e-06 Score=80.47 Aligned_cols=106 Identities=19% Similarity=0.277 Sum_probs=74.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCccCCCHHHH--hhcCCEEEEeeCChhhHhhh
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEV--AASCDVTFAMLADPESAMDV 143 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~--~~~aDivi~~vp~~~~~~~~ 143 (358)
++.+++++|+|+|.+|++++..|...|++|.+++|+.++.+.+.+. +... .+.+++ +.++|+||.|+|....+...
T Consensus 329 ~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~-~~~~~~~~l~~~DiVInatP~g~~~~~~ 407 (477)
T PRK09310 329 PLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKA-FPLESLPELHRIDIIINCLPPSVTIPKA 407 (477)
T ss_pred CcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccce-echhHhcccCCCCEEEEcCCCCCcchhH
Confidence 4567899999999999999999999999999999998776665442 1111 122222 46899999999976432211
Q ss_pred hcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 144 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 144 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
+. .+++|+...+..+. +.+..++.|...++
T Consensus 408 ----------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 408 ----------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred ----------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 11 38899988766554 66777777765554
No 178
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.21 E-value=4.9e-06 Score=76.81 Aligned_cols=94 Identities=19% Similarity=0.284 Sum_probs=71.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHC-C-CcEEEEcCCccchhhHHh----CC--CccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKA-G-CDVTVWNRTKSKCDPLIS----LG--AKYQPSPDEVAASCDVTFAMLADPESA 140 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~-g-~~V~~~~~~~~~~~~~~~----~g--~~~~~~~~~~~~~aDivi~~vp~~~~~ 140 (358)
..++++|||+|.++...++.+... . -+|.+|+|++++.+.+.+ .+ +..+++.++++++||+|+.++|.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~--- 203 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR--- 203 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---
Confidence 346899999999999999998753 2 479999999998776553 13 333678999999999999999633
Q ss_pred hhhhcccccccccCCCCCEEEEccCCChhH
Q 018303 141 MDVACGKHGAASGMGPGKGYVDVSTVDGDT 170 (358)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~ 170 (358)
..++ + .+++++|++|+.++.-.|..
T Consensus 204 ~P~~--~---~~~l~~G~hi~~iGs~~p~~ 228 (315)
T PRK06823 204 EPLL--Q---AEDIQPGTHITAVGADSPGK 228 (315)
T ss_pred Ccee--C---HHHcCCCcEEEecCCCCccc
Confidence 3555 2 24678999999887766643
No 179
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=98.19 E-value=7e-06 Score=75.59 Aligned_cols=111 Identities=14% Similarity=0.234 Sum_probs=82.6
Q ss_pred CeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHh----CC---CccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS----LG---AKYQPSPDEVAASCDVTFAMLADPESAM 141 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~----~g---~~~~~~~~~~~~~aDivi~~vp~~~~~~ 141 (358)
.+++|||+|.++...++.+.. ++ -+|.+|+|+++..+.+.. .+ +..+.+.++++++||+|+.|+|...
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--- 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--- 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence 589999999999999999986 34 479999999998877653 22 4567899999999999999998543
Q ss_pred hhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCC
Q 018303 142 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 189 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~ 189 (358)
.++ . .++++||++|..++...|.-.+--.+.+...+..++|.+
T Consensus 208 Pil--~---~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 208 PVL--K---AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred Cee--c---HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 666 2 346889999998887655544333444444444566543
No 180
>PRK06046 alanine dehydrogenase; Validated
Probab=98.16 E-value=6.1e-06 Score=76.79 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=69.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH-CCC-cEEEEcCCccchhhHHhC-----C--CccCCCHHHHhhcCCEEEEeeCChhh
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPES 139 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~-~g~-~V~~~~~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivi~~vp~~~~ 139 (358)
...+|||||+|.+|...++.+.. .+. .|.+|||++++.+.+.+. + +..+++.+++++ +|+|++|+|..
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~-- 204 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR-- 204 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC--
Confidence 34689999999999999999875 343 688899998877765542 3 334678899887 99999999853
Q ss_pred HhhhhcccccccccCCCCCEEEEccCCChh
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVSTVDGD 169 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~ 169 (358)
..++ + .+++++|++|..++.-.|.
T Consensus 205 -~P~~--~---~~~l~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 205 -KPVV--K---AEWIKEGTHINAIGADAPG 228 (326)
T ss_pred -CcEe--c---HHHcCCCCEEEecCCCCCc
Confidence 3555 1 2457999999888766553
No 181
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.16 E-value=1.1e-05 Score=74.22 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=63.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHH----h--------CCCccCCCHHHHhhcCCEEEEeeCCh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----S--------LGAKYQPSPDEVAASCDVTFAMLADP 137 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~----~--------~g~~~~~~~~~~~~~aDivi~~vp~~ 137 (358)
|+|+|||+|.||..+|..++..|+ +|.++|++.+..+... + ..+....+.++ +++||+||++++.+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 589999999999999999999876 8999999765433111 1 01334567776 78999999999743
Q ss_pred hh---------------HhhhhcccccccccCCCCCEEEEccCCChh
Q 018303 138 ES---------------AMDVACGKHGAASGMGPGKGYVDVSTVDGD 169 (358)
Q Consensus 138 ~~---------------~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~ 169 (358)
.. ++.++ +++.+. .++.++|+.++-...
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~---~~I~~~-~p~~~iIv~tNP~di 123 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVT---GRIMEH-SPNPIIVVVSNPLDA 123 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHH---HHHHHH-CCCeEEEEecCcHHH
Confidence 21 12222 334333 467788887664333
No 182
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.16 E-value=7.3e-06 Score=76.28 Aligned_cols=92 Identities=14% Similarity=0.267 Sum_probs=69.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHhC-----CC--ccCCCHHHHhhcCCEEEEeeCChhh
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL-----GA--KYQPSPDEVAASCDVTFAMLADPES 139 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~~-----g~--~~~~~~~~~~~~aDivi~~vp~~~~ 139 (358)
..++++|||+|.+|...++.+.. .+ .+|.+|+|++++.+.+.+. ++ ...++++++++++|+|+.|+|..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 34689999999999999999974 66 4699999999887766542 33 23578899999999999999753
Q ss_pred HhhhhcccccccccCCCCCEEEEccCCCh
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVSTVDG 168 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~ 168 (358)
..++ . .+.+++|.++..++.-.+
T Consensus 206 -~p~i--~---~~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 206 -TPIL--H---AEWLEPGQHVTAMGSDAE 228 (326)
T ss_pred -CcEe--c---HHHcCCCcEEEeeCCCCC
Confidence 2454 1 135789998887765433
No 183
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.15 E-value=2.3e-06 Score=82.28 Aligned_cols=71 Identities=24% Similarity=0.354 Sum_probs=56.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC-CCc--cCCCHHHHhhcCCEEEEeeCCh
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GAK--YQPSPDEVAASCDVTFAMLADP 137 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-g~~--~~~~~~~~~~~aDivi~~vp~~ 137 (358)
...+++|+|||+|.||..+++.|...| .+|++++|++++...+.+. +.. ...++.+.+.++|+||.|++.+
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~ 251 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAP 251 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCC
Confidence 356789999999999999999999999 7899999998776655442 321 2245667788999999998644
No 184
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.15 E-value=7.4e-06 Score=64.83 Aligned_cols=92 Identities=17% Similarity=0.300 Sum_probs=59.0
Q ss_pred eEEEEcC-ChhHHHHHHHHHHC-CCcEEEE-cCCccchhhHHhCC--Cc--cC--CCHHHH-hhcCCEEEEeeCChhhHh
Q 018303 72 RIGFLGM-GIMGTPMAQNLLKA-GCDVTVW-NRTKSKCDPLISLG--AK--YQ--PSPDEV-AASCDVTFAMLADPESAM 141 (358)
Q Consensus 72 ~IgIIG~-G~iG~~~a~~l~~~-g~~V~~~-~~~~~~~~~~~~~g--~~--~~--~~~~~~-~~~aDivi~~vp~~~~~~ 141 (358)
||+|+|+ |.+|..++..+... ++++..+ +++.++.+.+...+ +. .. .+.+++ ..++|+|++|+|.. ...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~-~~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG-VSK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH-HHH
Confidence 5899995 99999999999884 7777654 55443333333221 10 00 111122 24899999999854 555
Q ss_pred hhhcccccccccCCCCCEEEEccCCC
Q 018303 142 DVACGKHGAASGMGPGKGYVDVSTVD 167 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~~~ 167 (358)
.++ ..+...+++|+++||+++..
T Consensus 80 ~~~---~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 80 EIA---PLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred HHH---HHHHhhhcCCCEEEECCccc
Confidence 554 33345578999999998753
No 185
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.12 E-value=2.4e-05 Score=70.63 Aligned_cols=113 Identities=18% Similarity=0.239 Sum_probs=72.4
Q ss_pred CeEEEEc-CChhHHHHHHHHHH-CCCcEE-EEcCC-ccch-hhHHh------CCCccCCCHHHHhhcCCEEEEeeCChhh
Q 018303 71 GRIGFLG-MGIMGTPMAQNLLK-AGCDVT-VWNRT-KSKC-DPLIS------LGAKYQPSPDEVAASCDVTFAMLADPES 139 (358)
Q Consensus 71 ~~IgIIG-~G~iG~~~a~~l~~-~g~~V~-~~~~~-~~~~-~~~~~------~g~~~~~~~~~~~~~aDivi~~vp~~~~ 139 (358)
++|+|+| +|+||+.+++.+.. .++++. ++||. ++.. ....+ .++..+++++++...+|+||.++| +..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~-p~~ 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT-PEG 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC-hHH
Confidence 5899999 69999999999986 577765 47753 2221 11111 245667888888657999999996 555
Q ss_pred HhhhhcccccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhcCCeEecCCC
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPV 190 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~ 190 (358)
....+ . ..++.|..+|..+++ ...+.+.+.++.++.++.++-.+.
T Consensus 81 ~~~~~---~---~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N 126 (266)
T TIGR00036 81 VLNHL---K---FALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN 126 (266)
T ss_pred HHHHH---H---HHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence 55555 2 345666656644444 344556666666665555554443
No 186
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.12 E-value=6.7e-06 Score=70.71 Aligned_cols=99 Identities=21% Similarity=0.138 Sum_probs=68.8
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-----CC--cc--CCC---HHHHhhcCCEEEEe
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GA--KY--QPS---PDEVAASCDVTFAM 133 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-----g~--~~--~~~---~~~~~~~aDivi~~ 133 (358)
+++++++.|+|. |.+|+.+++.|...|++|.+++|+.++.+.+.+. +. .. ..+ ..++++++|+||.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 456679999995 9999999999999999999999998776555431 11 11 122 34678899999999
Q ss_pred eCChhhHhhhhcccccccccCCCCCEEEEccCCChhHH
Q 018303 134 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 171 (358)
Q Consensus 134 vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~ 171 (358)
+|.+..+.... ....+++.+++|+....+...
T Consensus 105 t~~g~~~~~~~------~~~~~~~~vv~D~~~~~~~~~ 136 (194)
T cd01078 105 GAAGVELLEKL------AWAPKPLAVAADVNAVPPVGI 136 (194)
T ss_pred CCCCceechhh------hcccCceeEEEEccCCCCCCc
Confidence 98655421111 123455789999877665543
No 187
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=1.2e-05 Score=72.38 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=63.9
Q ss_pred CCCCCeEEEEcCChh-HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||.|.+ |+.++..|...|..|+++... +.++.+.+++||+||.++|.+ +++
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~----~~i- 215 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKR----NVL- 215 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCc----Ccc-
Confidence 578899999999999 999999999999999988642 236778899999999999843 345
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
+. .++++|+++||++..
T Consensus 216 -~~---~~ik~gavVIDVGin 232 (285)
T PRK14189 216 -TA---DMVKPGATVIDVGMN 232 (285)
T ss_pred -CH---HHcCCCCEEEEcccc
Confidence 22 568999999999754
No 188
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.11 E-value=1.1e-05 Score=75.14 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=66.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHhC-----CCc--cCCCHHHHhhcCCEEEEeeCChhh
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL-----GAK--YQPSPDEVAASCDVTFAMLADPES 139 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~~-----g~~--~~~~~~~~~~~aDivi~~vp~~~~ 139 (358)
..++|+|||+|.+|+..+..+.. .+ .+|.+|+|++++.+.+.+. ++. ...++++++.++|+|+.++|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 34689999999999999998875 45 5799999999888776542 332 3578899999999999999753
Q ss_pred HhhhhcccccccccCCCCCEEEEccC
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~ 165 (358)
..++ .. ..+++|+++..++.
T Consensus 209 -~p~i--~~---~~l~~g~~v~~vg~ 228 (330)
T PRK08291 209 -EPIL--KA---EWLHPGLHVTAMGS 228 (330)
T ss_pred -CcEe--cH---HHcCCCceEEeeCC
Confidence 2444 11 24678887766544
No 189
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.10 E-value=1.4e-05 Score=72.10 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=63.6
Q ss_pred CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
+++++++.|||.|. +|+.+|..|...|..|+++++.. .++.+.+++||+||.+++.+. ++
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~----~i- 215 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPG----LV- 215 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCc----cc-
Confidence 57889999999999 99999999999999999998642 367788999999999998643 34
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
.. ..+++|+++||++..
T Consensus 216 -~~---~~vk~gavVIDvGi~ 232 (286)
T PRK14175 216 -TK---DVVKEGAVIIDVGNT 232 (286)
T ss_pred -CH---HHcCCCcEEEEcCCC
Confidence 22 247899999999753
No 190
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.09 E-value=4.1e-06 Score=80.79 Aligned_cols=71 Identities=25% Similarity=0.349 Sum_probs=55.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-CCc--cCCCHHHHhhcCCEEEEeeCChh
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAK--YQPSPDEVAASCDVTFAMLADPE 138 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~~--~~~~~~~~~~~aDivi~~vp~~~ 138 (358)
..+++|+|||+|.||..+++.|...|. +|++++|++++...+... |.. ...+..+.+.++|+||.|+|.+.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 567899999999999999999999997 799999998876655443 322 12355667788999999997543
No 191
>PRK11579 putative oxidoreductase; Provisional
Probab=98.07 E-value=4e-05 Score=72.13 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=73.4
Q ss_pred CeEEEEcCChhHHH-HHHHHHHC-CCcEE-EEcCCccchhhHHhC-CCccCCCHHHHhh--cCCEEEEeeCChhhHhhhh
Q 018303 71 GRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 71 ~~IgIIG~G~iG~~-~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~ 144 (358)
.+|||||+|.||.. .+..+... ++++. ++|+++++.. ... +...++|++++++ +.|+|++|+|...+.+.++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~ 82 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK 82 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 58999999999984 56666553 67765 5888875543 122 4556789999996 4799999999766655554
Q ss_pred cccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303 145 CGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF 185 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~ 185 (358)
..++.|+.|+.- -.....+.+++.++.++.++.+
T Consensus 83 -------~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 83 -------AALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred -------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 346678877743 2234456677777777766543
No 192
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=98.07 E-value=7e-06 Score=75.89 Aligned_cols=95 Identities=17% Similarity=0.256 Sum_probs=61.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHhC----C--CccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAASCDVTFAMLADPESA 140 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~aDivi~~vp~~~~~ 140 (358)
...+++|||+|..|...++.+.. ++ -+|.+|+|++++.+.+.+. + +..+++.++++++||+|+.|+|.....
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~ 206 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA 206 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC
Confidence 34689999999999999999875 44 4799999999887766542 2 345778999999999999999744322
Q ss_pred hhhhcccccccccCCCCCEEEEccCCChh
Q 018303 141 MDVACGKHGAASGMGPGKGYVDVSTVDGD 169 (358)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~ 169 (358)
.++ + ..++++|.+|+.++...+.
T Consensus 207 -P~~--~---~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 207 -PVF--D---AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp -ESB------GGGS-TT-EEEE-S-SSTT
T ss_pred -ccc--c---HHHcCCCcEEEEecCCCCc
Confidence 555 2 2468999999988876663
No 193
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=98.06 E-value=4.7e-05 Score=70.96 Aligned_cols=110 Identities=11% Similarity=0.144 Sum_probs=81.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--CCcEE-EEcCCccchhhHHh-CCCccCCCHHHHhhcCCEEEEeeCCh--hhHhhhh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKA--GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADP--ESAMDVA 144 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~--g~~V~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~vp~~--~~~~~~~ 144 (358)
.+|||||+ .||...++.+... ++++. ++|+++++.+.+.+ .|+..+++.++++++.|++++++|.. .....-+
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 58999999 6899999999875 46654 68999888877765 47777899999999999999999742 2222111
Q ss_pred cccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303 145 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 186 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~ 186 (358)
....++.|+.|+.---....+.+++.+..+++++.+.
T Consensus 83 -----a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 83 -----ARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred -----HHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 1245778888886644456677788888888777654
No 194
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.05 E-value=1.1e-05 Score=76.06 Aligned_cols=69 Identities=26% Similarity=0.305 Sum_probs=58.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC-C--CccCCCHHHHhhcCCEEEEeeC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-G--AKYQPSPDEVAASCDVTFAMLA 135 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-g--~~~~~~~~~~~~~aDivi~~vp 135 (358)
++.++++.|||+|.||..+|+.|...| .+|++.+|+.+++..+++. | +...+++.+.+.++|+||.++.
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS 247 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC
Confidence 467889999999999999999999999 6799999999998877653 4 2334566778899999999984
No 195
>PRK07589 ornithine cyclodeaminase; Validated
Probab=98.04 E-value=9.9e-06 Score=75.51 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=70.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHh----CC--CccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS----LG--AKYQPSPDEVAASCDVTFAMLADPESAM 141 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~----~g--~~~~~~~~~~~~~aDivi~~vp~~~~~~ 141 (358)
..+++|||+|..+...++.+.. +. .+|.+|+|++++.+.+.+ .+ +..+++.++++++||+|+.++| +....
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~-S~~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTA-DKTNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecC-CCCCC
Confidence 4689999999999999888765 33 479999999988776553 23 3446899999999999999996 32323
Q ss_pred hhhcccccccccCCCCCEEEEccCCChhH
Q 018303 142 DVACGKHGAASGMGPGKGYVDVSTVDGDT 170 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~ 170 (358)
.++ . .+++++|++|.-++.-.|..
T Consensus 208 Pvl--~---~~~lkpG~hV~aIGs~~p~~ 231 (346)
T PRK07589 208 TIL--T---DDMVEPGMHINAVGGDCPGK 231 (346)
T ss_pred cee--c---HHHcCCCcEEEecCCCCCCc
Confidence 455 1 24679999988777655543
No 196
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.02 E-value=3e-05 Score=71.68 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=47.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHH----hC----C----CccCCCHHHHhhcCCEEEEeeC
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----SL----G----AKYQPSPDEVAASCDVTFAMLA 135 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~----~~----g----~~~~~~~~~~~~~aDivi~~vp 135 (358)
+||+|||+|.||..+|..++..|. +|.++|++++..+... +. + +....+. +.+++||+||+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 699999999999999999998765 9999999876543211 11 1 1223455 45789999999973
No 197
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.02 E-value=9.8e-06 Score=67.98 Aligned_cols=97 Identities=24% Similarity=0.253 Sum_probs=68.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc---c-----------------------CCCH
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK---Y-----------------------QPSP 120 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~---~-----------------------~~~~ 120 (358)
.....+|.|+|.|+.|..-++.+...|++|..+|.++...+.....+.. . ...+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 3455799999999999999999999999999999988766655443221 1 1134
Q ss_pred HHHhhcCCEEEEeeC-ChhhHhhhhcccccccccCCCCCEEEEccC
Q 018303 121 DEVAASCDVTFAMLA-DPESAMDVACGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 121 ~~~~~~aDivi~~vp-~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~ 165 (358)
.+.++.+|+||.++- .......++ .++..+.|+++.+|+|+|-
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lv--t~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLV--TEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SB--EHHHHHTSSTTEEEEETTG
T ss_pred HHHHhhCcEEeeecccCCCCCCEEE--EhHHhhccCCCceEEEEEe
Confidence 566788999997552 344555666 5777889999999999964
No 198
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.01 E-value=3.3e-05 Score=81.03 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=77.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHC-CCc-------------EEEEcCCccchhhHHhC--C---Ccc-CCCHHHHh---h
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKA-GCD-------------VTVWNRTKSKCDPLISL--G---AKY-QPSPDEVA---A 125 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~-g~~-------------V~~~~~~~~~~~~~~~~--g---~~~-~~~~~~~~---~ 125 (358)
.+++|+|||+|.||+.+++.|+.. +.+ |.++|++++.++.+.+. + +.. +.+.+++. +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 467999999999999999999864 333 88999998877766542 3 222 45666655 5
Q ss_pred cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
++|+|++|+|...+ ..++ ...++.|+.+++.+ -......++.+..++.++.++.
T Consensus 648 ~~DaVIsalP~~~H-~~VA------kaAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 648 QVDVVISLLPASCH-AVVA------KACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred CCCEEEECCCchhh-HHHH------HHHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 79999999986433 2222 24466778888776 4455566777777777766543
No 199
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.00 E-value=3.4e-05 Score=71.59 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=62.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHH----h----CC----CccCCCHHHHhhcCCEEEEee--
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLI----S----LG----AKYQPSPDEVAASCDVTFAML-- 134 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~----~----~g----~~~~~~~~~~~~~aDivi~~v-- 134 (358)
.+||+|||+|.||..++..+...| .++.++|++++..+... + .+ +....+.+ .+++||+||++.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag~ 83 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAGV 83 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCCC
Confidence 469999999999999999999888 68999999876543211 1 01 12234665 679999999999
Q ss_pred CChh-------------hHhhhhcccccccccCCCCCEEEEccCCC
Q 018303 135 ADPE-------------SAMDVACGKHGAASGMGPGKGYVDVSTVD 167 (358)
Q Consensus 135 p~~~-------------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~ 167 (358)
|..+ -.+.+. +++.+ ..|.+++|+.++..
T Consensus 84 ~~~~g~~r~dll~~n~~i~~~i~---~~i~~-~~p~a~vivvsNP~ 125 (319)
T PTZ00117 84 QRKEEMTREDLLTINGKIMKSVA---ESVKK-YCPNAFVICVTNPL 125 (319)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH---HHHHH-HCCCeEEEEecChH
Confidence 3221 122333 33333 45788888886543
No 200
>PRK06199 ornithine cyclodeaminase; Validated
Probab=98.00 E-value=1.3e-05 Score=75.74 Aligned_cols=92 Identities=18% Similarity=0.257 Sum_probs=68.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH-C-C-CcEEEEcCCccchhhHHh----C--C---CccCCCHHHHhhcCCEEEEeeCC
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLK-A-G-CDVTVWNRTKSKCDPLIS----L--G---AKYQPSPDEVAASCDVTFAMLAD 136 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~-~-g-~~V~~~~~~~~~~~~~~~----~--g---~~~~~~~~~~~~~aDivi~~vp~ 136 (358)
..++++|||+|.++...++.+.. + . -+|.+|+|++++.+.+.+ . + +..+++.++++++||+|+.|++.
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence 34689999999999999999876 3 2 479999999988776543 1 2 44568999999999999999964
Q ss_pred hh---hHhhhhcccccccccCCCCCEEEEccC
Q 018303 137 PE---SAMDVACGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 137 ~~---~~~~~~~~~~~~~~~l~~~~~vi~~s~ 165 (358)
.. ....++ + .+++++|++|+..+.
T Consensus 234 ~~~~~s~~Pv~--~---~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 234 ETGDPSTYPYV--K---REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCCcCcEe--c---HHHcCCCcEEecCCc
Confidence 32 233555 2 246789998875433
No 201
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.98 E-value=3.1e-05 Score=71.79 Aligned_cols=67 Identities=22% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhh--H---Hh---C----CCccCCCHHHHhhcCCEEEEe
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDP--L---IS---L----GAKYQPSPDEVAASCDVTFAM 133 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~--~---~~---~----g~~~~~~~~~~~~~aDivi~~ 133 (358)
....+||+|||+|.||..+|..++..|. +|.++|++++.... + .. . .+....+. +.+++||+||++
T Consensus 3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~t 81 (321)
T PTZ00082 3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVT 81 (321)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEEC
Confidence 3445799999999999999999998885 89999998875421 1 00 1 12333566 567999999997
Q ss_pred e
Q 018303 134 L 134 (358)
Q Consensus 134 v 134 (358)
.
T Consensus 82 a 82 (321)
T PTZ00082 82 A 82 (321)
T ss_pred C
Confidence 7
No 202
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.97 E-value=4.2e-05 Score=56.47 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=51.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHC-CCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
.+.+++++|+|+|.+|+.++..+... +.+|.+||| |+++.+++.+.....
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~--- 70 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLE--- 70 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchH---
Confidence 45667999999999999999999998 578999988 999999975433322
Q ss_pred ccccccccCCCCCEEEEcc
Q 018303 146 GKHGAASGMGPGKGYVDVS 164 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s 164 (358)
+....++++.++++++
T Consensus 71 ---~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 ---EATAKINEGAVVIDLA 86 (86)
T ss_pred ---HHHHhcCCCCEEEecC
Confidence 1234567888888763
No 203
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.95 E-value=3.2e-05 Score=60.55 Aligned_cols=104 Identities=21% Similarity=0.295 Sum_probs=72.9
Q ss_pred CeEEEEc----CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 71 GRIGFLG----MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 71 ~~IgIIG----~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
++|+||| -++.|..+.+.|.+.|++|+.+++..+... |...+.++.|.-...|++++++| +..+..++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v-- 72 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----GIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIV-- 72 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----TEE-BSSGGGCSST-SEEEE-S--HHHHHHHH--
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----cEEeeccccCCCCCCCEEEEEcC-HHHHHHHH--
Confidence 4799999 689999999999999999999988765432 56677888884478999999996 77888888
Q ss_pred cccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303 147 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 188 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~ 188 (358)
+++.+. ..+.+++..+ ...+++.+.+++.++.+++.
T Consensus 73 -~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 73 -DEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -HHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEES
T ss_pred -HHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeC
Confidence 655443 4555666444 55667888888888888754
No 204
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.95 E-value=5.3e-05 Score=62.50 Aligned_cols=79 Identities=24% Similarity=0.353 Sum_probs=56.6
Q ss_pred CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||-+. +|+.++..|...|..|+.++.+. .++++.++++|+||.+++.+.. +
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~----i- 93 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNL----I- 93 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-----B-
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccccc----c-
Confidence 57889999999985 99999999999999999987643 3677889999999999975433 3
Q ss_pred ccccccccCCCCCEEEEccCCCh
Q 018303 146 GKHGAASGMGPGKGYVDVSTVDG 168 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~~ 168 (358)
. ..++++|+++||++....
T Consensus 94 -~---~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 94 -K---ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp -----GGGS-TTEEEEE--CEEE
T ss_pred -c---cccccCCcEEEecCCccc
Confidence 1 235799999999976544
No 205
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.92 E-value=2.1e-05 Score=71.58 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=79.5
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
-+.+|++-|.|+|..|+.+|.+++..|.+|+++..+|-++-...-.|..+. ..+|+...+|++|.++. .++++
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TG----nkdVi-- 278 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATG----NKDVI-- 278 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccC----CcCcc--
Confidence 467889999999999999999999999999999998866544444566654 78899999999999985 45566
Q ss_pred cccccccCCCCCEEEEccCCCh-hHHHHHH
Q 018303 147 KHGAASGMGPGKGYVDVSTVDG-DTSKLIN 175 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~ 175 (358)
..+-+..||.|+++.|.+.-.. ++...|.
T Consensus 279 ~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~ 308 (420)
T COG0499 279 RKEHFEKMKDGAILANAGHFDVEIDVAGLE 308 (420)
T ss_pred CHHHHHhccCCeEEecccccceeccHHHHH
Confidence 4566778999999999875433 3333443
No 206
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.92 E-value=3.9e-05 Score=74.67 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc--CC---------------C----------H
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY--QP---------------S----------P 120 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~--~~---------------~----------~ 120 (358)
..+.++.|+|+|.+|...++.+...|..|+++|+++++.+.....|... .+ + +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 3457999999999999999999999999999999988777666555432 00 0 3
Q ss_pred HHHhhcCCEEEEeeCC-hhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303 121 DEVAASCDVTFAMLAD-PESAMDVACGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 121 ~~~~~~aDivi~~vp~-~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
.+.++++|+||.++-- ......++ .++..+.|++|.++||++..
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP~Li--t~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAPKLI--TEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCCeee--hHHHHhhCCCCCEEEEeeeC
Confidence 3456789999998811 11122344 36667899999999999653
No 207
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.91 E-value=1.8e-05 Score=75.79 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=57.3
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-C-C--ccCCCHHHHhhcCCEEEEeeCCh
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G-A--KYQPSPDEVAASCDVTFAMLADP 137 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g-~--~~~~~~~~~~~~aDivi~~vp~~ 137 (358)
.+.+++|.|||+|.||+.++..|...|. +|++++|+.++.+.+.+. + . ...+++.+.+.++|+||.|++.+
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL 253 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC
Confidence 4667899999999999999999999985 799999998887777653 2 2 22345567788999999999744
No 208
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.90 E-value=3e-05 Score=61.24 Aligned_cols=89 Identities=19% Similarity=0.311 Sum_probs=57.3
Q ss_pred eEEEEc-CChhHHHHHHHHHHC-CCcE-EEEcCCccchhhHHhC--------CCccCCCHHHHhhcCCEEEEeeCChhhH
Q 018303 72 RIGFLG-MGIMGTPMAQNLLKA-GCDV-TVWNRTKSKCDPLISL--------GAKYQPSPDEVAASCDVTFAMLADPESA 140 (358)
Q Consensus 72 ~IgIIG-~G~iG~~~a~~l~~~-g~~V-~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~aDivi~~vp~~~~~ 140 (358)
||+||| +|.+|+.+.+.|.+. .+++ .+++++......+... .....+...+.+.++|+|++|+| ....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~-~~~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALP-HGAS 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SC-HHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCc-hhHH
Confidence 699999 999999999999884 3454 4456655233333221 11122222344589999999997 5555
Q ss_pred hhhhcccccccccCCCCCEEEEccCCC
Q 018303 141 MDVACGKHGAASGMGPGKGYVDVSTVD 167 (358)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~ 167 (358)
.... +.+ +++|..+||.|...
T Consensus 80 ~~~~---~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 80 KELA---PKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp HHHH---HHH---HHTTSEEEESSSTT
T ss_pred HHHH---HHH---hhCCcEEEeCCHHH
Confidence 5555 333 57888999998754
No 209
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.89 E-value=2.9e-05 Score=74.88 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=49.9
Q ss_pred CeEEEEcCChhHHHHHH--HH----HHCCCcEEEEcCCccchhhHHh--------C----CCccCCCHHHHhhcCCEEEE
Q 018303 71 GRIGFLGMGIMGTPMAQ--NL----LKAGCDVTVWNRTKSKCDPLIS--------L----GAKYQPSPDEVAASCDVTFA 132 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~--~l----~~~g~~V~~~~~~~~~~~~~~~--------~----g~~~~~~~~~~~~~aDivi~ 132 (358)
++|+|||+|.+|.+.+. .+ ...|++|.+||+++++.+.... . .+..++|+.+++++||+|++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 47999999999998665 23 3457899999999877654322 1 23446788899999999999
Q ss_pred eeC
Q 018303 133 MLA 135 (358)
Q Consensus 133 ~vp 135 (358)
++|
T Consensus 81 ai~ 83 (423)
T cd05297 81 TIQ 83 (423)
T ss_pred eeE
Confidence 998
No 210
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.88 E-value=0.0001 Score=64.84 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=71.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCc---EEEEcCC----ccch-------hhHHhC-C-CccCCCHHHHhhcCCEE
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCD---VTVWNRT----KSKC-------DPLISL-G-AKYQPSPDEVAASCDVT 130 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~---V~~~~~~----~~~~-------~~~~~~-g-~~~~~~~~~~~~~aDiv 130 (358)
.+++++|.|+|+|.+|+.++..|...|.. |+++||+ .++. ..+.+. + .....++.+.++++|+|
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvl 101 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVF 101 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEE
Confidence 45667999999999999999999999974 9999998 3432 122221 1 11113676888899999
Q ss_pred EEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCe
Q 018303 131 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 184 (358)
Q Consensus 131 i~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~ 184 (358)
|-++|... + +++..+.|.++.++.++++ |.. +.+.+...+.+..
T Consensus 102 IgaT~~G~-----~--~~~~l~~m~~~~ivf~lsn--P~~-e~~~~~A~~~ga~ 145 (226)
T cd05311 102 IGVSRPGV-----V--KKEMIKKMAKDPIVFALAN--PVP-EIWPEEAKEAGAD 145 (226)
T ss_pred EeCCCCCC-----C--CHHHHHhhCCCCEEEEeCC--CCC-cCCHHHHHHcCCc
Confidence 99997332 2 2344456678888888873 332 3344444444543
No 211
>PRK10206 putative oxidoreductase; Provisional
Probab=97.87 E-value=9.5e-05 Score=69.46 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=71.9
Q ss_pred CeEEEEcCChhHHH-HHHHHHH--CCCcEE-EEcCCccchhhHHhCC-CccCCCHHHHhh--cCCEEEEeeCChhhHhhh
Q 018303 71 GRIGFLGMGIMGTP-MAQNLLK--AGCDVT-VWNRTKSKCDPLISLG-AKYQPSPDEVAA--SCDVTFAMLADPESAMDV 143 (358)
Q Consensus 71 ~~IgIIG~G~iG~~-~a~~l~~--~g~~V~-~~~~~~~~~~~~~~~g-~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~ 143 (358)
.||||||+|.++.. .+..+.. .+++|. ++|+++++.+.....+ +..++|.+++++ +.|+|++++|...+.+.+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~ 81 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA 81 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHH
Confidence 48999999998753 4554533 356665 6899875543233333 566789999996 579999999977665555
Q ss_pred hcccccccccCCCCCEEEEc--cCCChhHHHHHHHHHHhcCCeE
Q 018303 144 ACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF 185 (358)
Q Consensus 144 ~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~ 185 (358)
. ..++.|+.|+.- -.....+.+++.+..++.++.+
T Consensus 82 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 118 (344)
T PRK10206 82 K-------RALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTV 118 (344)
T ss_pred H-------HHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence 4 345667766543 2234566777888877776554
No 212
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.86 E-value=1.8e-05 Score=69.01 Aligned_cols=109 Identities=11% Similarity=0.102 Sum_probs=65.6
Q ss_pred CCCeEEEEcCChhHHHHHHHH--HHCCCcEE-EEcCCccchhhHHh-CCCccCCCHHHHhhc--CCEEEEeeCChhh---
Q 018303 69 LPGRIGFLGMGIMGTPMAQNL--LKAGCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAAS--CDVTFAMLADPES--- 139 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l--~~~g~~V~-~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~--aDivi~~vp~~~~--- 139 (358)
...+|+|||+|.+|..+++.+ ...|+++. ++|+++++...... ..+....++.+++++ .|++++|+|....
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i 162 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEV 162 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHH
Confidence 346899999999999999864 35678776 47887655432211 112233467777755 9999999986543
Q ss_pred HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHH
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 179 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~ 179 (358)
...+. ...+...+....+.+++.++..++..++...+.
T Consensus 163 ~~~l~--~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~ 200 (213)
T PRK05472 163 ADRLV--EAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQ 200 (213)
T ss_pred HHHHH--HcCCCEEeecCceeecCCCCCEEEEechHHHHH
Confidence 22222 222333344445555666655555555555543
No 213
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.86 E-value=0.00012 Score=59.13 Aligned_cols=78 Identities=18% Similarity=0.255 Sum_probs=63.4
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
+.++++|.|+|- ...|..++..|.+.|..|..++++. .++++.+++||+|+.+++.+ +++
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~----~~i- 85 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKP----EKV- 85 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCC----Ccc-
Confidence 577889999988 6679999999999999999998642 26778899999999999755 334
Q ss_pred ccccccccCCCCCEEEEccCCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTVD 167 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~ 167 (358)
+ .+++++|++++|++...
T Consensus 86 -~---~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 -P---TEWIKPGATVINCSPTK 103 (140)
T ss_pred -C---HHHcCCCCEEEEcCCCc
Confidence 2 24589999999987655
No 214
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.86 E-value=7.3e-05 Score=67.31 Aligned_cols=77 Identities=26% Similarity=0.344 Sum_probs=63.5
Q ss_pred CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||-|. +|+.++..|...|..|+++.+. +.++.+.++++|+||.+++.+.. +
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~----v- 216 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGF----I- 216 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCccc----c-
Confidence 57889999999999 9999999999999999999764 23678889999999999975542 3
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
.. ..+++|+++||++..
T Consensus 217 -~~---~~vk~gavVIDvGin 233 (285)
T PRK10792 217 -PG---EWIKPGAIVIDVGIN 233 (285)
T ss_pred -cH---HHcCCCcEEEEcccc
Confidence 11 457999999999743
No 215
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.84 E-value=9.7e-05 Score=67.31 Aligned_cols=117 Identities=16% Similarity=0.066 Sum_probs=74.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-C----CccCC---CHHHHhhcCCEEEEeeCChh
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G----AKYQP---SPDEVAASCDVTFAMLADPE 138 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g----~~~~~---~~~~~~~~aDivi~~vp~~~ 138 (358)
..++++.|||+|.+|++++..|...|. +|++++|+.++.+.+.+. + +.... +..+.+.++|+||.|+|...
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 456799999999999999999999997 699999999888777542 1 11121 23355678999999998653
Q ss_pred hHhh-hhcccccc--cccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303 139 SAMD-VACGKHGA--ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 186 (358)
Q Consensus 139 ~~~~-~~~~~~~~--~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~ 186 (358)
.... .+...... ...+.++.+++|+.=.+..+ .+.+..++.|...+
T Consensus 203 ~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~ 251 (282)
T TIGR01809 203 PADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPT--PLVAIVSAAGWRVI 251 (282)
T ss_pred CCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCC--HHHHHHHHCCCEEE
Confidence 2211 11000000 01234677888886543332 35555555555444
No 216
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.84 E-value=8e-05 Score=67.70 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=64.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC-CCcEE-EEcCCccch--hhHHhCCCcc-CCCHHHHhh-----cCCEEEEeeCChhh
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKC--DPLISLGAKY-QPSPDEVAA-----SCDVTFAMLADPES 139 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~--~~~~~~g~~~-~~~~~~~~~-----~aDivi~~vp~~~~ 139 (358)
+.+|||||+|+||+.+...+.+. +.++. ++|+++++. +...+.|+.. +.+.+++++ +.|+|+.++|...+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 46899999999999988887753 56655 588887542 3344457665 468899985 58999999975444
Q ss_pred HhhhhcccccccccCCCCCEEEEccCCC
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVSTVD 167 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~ 167 (358)
.+... ...+.|+.+||.+...
T Consensus 84 ~e~a~-------~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 84 VRHAA-------KLREAGIRAIDLTPAA 104 (302)
T ss_pred HHHHH-------HHHHcCCeEEECCccc
Confidence 33332 3457899999986543
No 217
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.84 E-value=0.00011 Score=64.55 Aligned_cols=110 Identities=19% Similarity=0.230 Sum_probs=71.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcC----------CccchhhHHhC-C-------CccCCCHHHHh-hc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNR----------TKSKCDPLISL-G-------AKYQPSPDEVA-AS 126 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~----------~~~~~~~~~~~-g-------~~~~~~~~~~~-~~ 126 (358)
++.+++|.|.|+|++|+.+++.|.+.|.+|+ +.|. +.+.+....+. | .... +.++++ .+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~ 106 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELD 106 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeec
Confidence 5677899999999999999999999999988 5665 33332222221 2 1111 223332 36
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
||+++-|.+...-+.+.+ + .++ =++|+--++... . ....+.|.++|+.++.
T Consensus 107 ~Dvlip~a~~~~i~~~~~---~----~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~~~P 157 (227)
T cd01076 107 CDILIPAALENQITADNA---D----RIK-AKIIVEAANGPT-T-PEADEILHERGVLVVP 157 (227)
T ss_pred ccEEEecCccCccCHHHH---h----hce-eeEEEeCCCCCC-C-HHHHHHHHHCCCEEEC
Confidence 899999997655555555 3 332 345555555544 4 5677888899988764
No 218
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=7.5e-05 Score=67.72 Aligned_cols=77 Identities=23% Similarity=0.321 Sum_probs=62.0
Q ss_pred CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
+..++++.|||.|. .|+.++..|...|..|+++++.. .++.+.++++|+||.+++.+. .+
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~----~v- 216 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPE----LI- 216 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCC----cC-
Confidence 67889999999998 99999999999999999998731 245667789999999997433 34
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
+. +.+++|++++|++-.
T Consensus 217 -~~---~~lk~gavViDvg~n 233 (283)
T PRK14192 217 -KK---DWIKQGAVVVDAGFH 233 (283)
T ss_pred -CH---HHcCCCCEEEEEEEe
Confidence 22 357999999999643
No 219
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.82 E-value=0.00012 Score=67.51 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=49.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhhHHhC--------C--Cc-cCCCHHHHhhcCCEEEEeeCCh
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISL--------G--AK-YQPSPDEVAASCDVTFAMLADP 137 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~--------g--~~-~~~~~~~~~~~aDivi~~vp~~ 137 (358)
+|+|||+|.+|..+|..|...| .+|.++|+++++.+..... + .. ...+. +.+++||+||+++..+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~ 79 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP 79 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence 7999999999999999999988 5899999998876544321 1 11 12344 4578999999999653
No 220
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.81 E-value=0.00016 Score=66.09 Aligned_cols=116 Identities=13% Similarity=0.066 Sum_probs=73.5
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCc---cchhhHHh----CC----Ccc--CC---CHHHHhhcCCE
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTK---SKCDPLIS----LG----AKY--QP---SPDEVAASCDV 129 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~---~~~~~~~~----~g----~~~--~~---~~~~~~~~aDi 129 (358)
...++++.|+|+|.+|++++..|+..|.+ |.+++|+. ++.+.+.+ .+ +.. .. +..+.++.+|+
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 35567899999999999999999999986 99999986 44444322 11 110 11 22344567899
Q ss_pred EEEeeCChhh--HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 130 TFAMLADPES--AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 130 vi~~vp~~~~--~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
||.++|.... ..... -.....+.++.+++|+.=.+..+ .+.+..++.|...++
T Consensus 203 lINaTp~Gm~~~~~~~~---~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 257 (289)
T PRK12548 203 LVNATLVGMKPNDGETN---IKDTSVFRKDLVVADTVYNPKKT--KLLEDAEAAGCKTVG 257 (289)
T ss_pred EEEeCCCCCCCCCCCCC---CCcHHhcCCCCEEEEecCCCCCC--HHHHHHHHCCCeeeC
Confidence 9999985432 11111 00123467888999986654432 466666666655543
No 221
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.79 E-value=8.2e-05 Score=68.53 Aligned_cols=62 Identities=21% Similarity=0.163 Sum_probs=45.4
Q ss_pred EEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhH----HhC--------CCccCCCHHHHhhcCCEEEEeeC
Q 018303 73 IGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPL----ISL--------GAKYQPSPDEVAASCDVTFAMLA 135 (358)
Q Consensus 73 IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~----~~~--------g~~~~~~~~~~~~~aDivi~~vp 135 (358)
|+|||+|.||..+|..++..|. +|.++|++++..+.. .+. .+....+. +.+++||+||++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999998776 999999987653211 111 12223454 45799999999884
No 222
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.76 E-value=0.00012 Score=66.28 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=63.6
Q ss_pred CeEEEEcCChhHHHHHHHHHH-CCCcEE-EEcCCccch--hhHHhCCCcc-CCCHHHHhh--cCCEEEEeeCChhhHhhh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLK-AGCDVT-VWNRTKSKC--DPLISLGAKY-QPSPDEVAA--SCDVTFAMLADPESAMDV 143 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~-~g~~V~-~~~~~~~~~--~~~~~~g~~~-~~~~~~~~~--~aDivi~~vp~~~~~~~~ 143 (358)
.+|||||+|+||+.++..+.. .++++. ++++++++. +...+.|+.. +.+.+++++ +.|+|++++|...+.+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 489999999999998777764 456665 588887653 3334456643 457888885 578899999866555444
Q ss_pred hcccccccccCCCCCEEEEccCCC
Q 018303 144 ACGKHGAASGMGPGKGYVDVSTVD 167 (358)
Q Consensus 144 ~~~~~~~~~~l~~~~~vi~~s~~~ 167 (358)
. ..+..|+.+++.+...
T Consensus 82 ~-------~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 82 R-------LLAELGKIVIDLTPAA 98 (285)
T ss_pred H-------HHHHcCCEEEECCccc
Confidence 3 3467888888875443
No 223
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.76 E-value=0.00013 Score=65.81 Aligned_cols=77 Identities=19% Similarity=0.189 Sum_probs=63.2
Q ss_pred CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||.|. +|+.++..|...|..|++++... .++.+..+++|+||.++..+. ++
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p~----~i- 221 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGVKH----LI- 221 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCCcc----cc-
Confidence 57889999999999 99999999999999999998532 367788899999999997553 33
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
.. ..+++|+++||++..
T Consensus 222 -~~---~~vk~gavVIDvGin 238 (287)
T PRK14176 222 -KA---DMVKEGAVIFDVGIT 238 (287)
T ss_pred -CH---HHcCCCcEEEEeccc
Confidence 12 357899999999753
No 224
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.76 E-value=9.6e-05 Score=71.34 Aligned_cols=110 Identities=18% Similarity=0.277 Sum_probs=71.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--------C--Cc-EEEEcCCccchhhHHhCCCccCCCHHHHhhc--CCEEEEeeCCh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKA--------G--CD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADP 137 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~--------g--~~-V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~ 137 (358)
.+|||+|+|.||+.+++.+.+. | .+ +.++++++++.......+..++++.++++.+ .|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 5899999999999999888543 3 34 3457887665432222234567789999864 79999998643
Q ss_pred hhHhhhhcccccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhcCCeEe
Q 018303 138 ESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFL 186 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~ 186 (358)
......+ ...++.|+.|+...-. .....++|.+..+++++.+.
T Consensus 84 ~~~~~~~------~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~ 127 (426)
T PRK06349 84 EPARELI------LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY 127 (426)
T ss_pred hHHHHHH------HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 2223333 3567788888844221 12334677777777777543
No 225
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.75 E-value=6.8e-05 Score=65.95 Aligned_cols=73 Identities=19% Similarity=0.355 Sum_probs=53.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh--CCCcc----CCC---HHHH-hhcCCEEEEeeCChhhH
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKY----QPS---PDEV-AASCDVTFAMLADPESA 140 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--~g~~~----~~~---~~~~-~~~aDivi~~vp~~~~~ 140 (358)
|++.|||+|++|..+|+.|.+.|++|.+.++++++++.... ..... .++ +.++ +.++|+++.++. ...+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~-~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG-NDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC-CCHH
Confidence 58999999999999999999999999999999988777433 22111 112 2333 466999999995 4444
Q ss_pred hhhh
Q 018303 141 MDVA 144 (358)
Q Consensus 141 ~~~~ 144 (358)
.-++
T Consensus 80 N~i~ 83 (225)
T COG0569 80 NSVL 83 (225)
T ss_pred HHHH
Confidence 4444
No 226
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.74 E-value=9.2e-05 Score=66.86 Aligned_cols=89 Identities=16% Similarity=0.239 Sum_probs=61.3
Q ss_pred EEEEcC-ChhHHHHHHHHHHCC----CcEEEEcCCccchhhHHh-----------CCCccCCCHHHHhhcCCEEEEeeCC
Q 018303 73 IGFLGM-GIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLIS-----------LGAKYQPSPDEVAASCDVTFAMLAD 136 (358)
Q Consensus 73 IgIIG~-G~iG~~~a~~l~~~g----~~V~~~~~~~~~~~~~~~-----------~g~~~~~~~~~~~~~aDivi~~vp~ 136 (358)
|+|||+ |.+|..++..+...| .+|.++|+++++.+.... ..+...+|+.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 999999999999888 689999998876543221 1223355667889999999996522
Q ss_pred h--------------h-hHhhhhcccccccccCCCCCEEEEccC
Q 018303 137 P--------------E-SAMDVACGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 137 ~--------------~-~~~~~~~~~~~~~~~l~~~~~vi~~s~ 165 (358)
+ . ..+.+. +++ ....|++++++.++
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~---~~i-~~~~p~a~~i~~tN 120 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIG---DNI-EKYSPDAWIIVVSN 120 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHH---HHH-HHHCCCeEEEEecC
Confidence 1 1 122232 333 23458888998854
No 227
>PRK04148 hypothetical protein; Provisional
Probab=97.74 E-value=0.00015 Score=57.67 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-----cCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-----YQPSPDEVAASCDVTFAMLADPESAMDV 143 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~~~aDivi~~vp~~~~~~~~ 143 (358)
++++|.+||+| -|..+|..|++.|++|++.|.+++..+.+.+.+.. .+....++.+++|+|...=| ++++..-
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp-p~el~~~ 93 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-PRDLQPF 93 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC-CHHHHHH
Confidence 34789999999 99999999999999999999999987776665432 23334467788888887776 5555555
Q ss_pred hcccccccccCCCCCEEEEccCCC
Q 018303 144 ACGKHGAASGMGPGKGYVDVSTVD 167 (358)
Q Consensus 144 ~~~~~~~~~~l~~~~~vi~~s~~~ 167 (358)
+ -++.......-++...+.-.
T Consensus 94 ~---~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 94 I---LELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred H---HHHHHHcCCCEEEEcCCCCC
Confidence 5 44555555444554444433
No 228
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.74 E-value=0.0003 Score=61.35 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=69.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCc----------cchhhHHhC-CCccCC-----CHHHHh-hcCC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTK----------SKCDPLISL-GAKYQP-----SPDEVA-ASCD 128 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~----------~~~~~~~~~-g~~~~~-----~~~~~~-~~aD 128 (358)
++.+++|.|.|+|++|+.+|+.|.+.|.. |.+.|.+. +..+...+. ++..+. +.++++ .+||
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 99 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence 56778999999999999999999999885 55678776 443333322 121111 123332 3699
Q ss_pred EEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 129 VTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 129 ivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
+++-|.+.+.-+.... ..++ -++|+.-++++... .-.+.|.++|+.++.
T Consensus 100 VlipaA~~~~i~~~~a-------~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~v~P 148 (217)
T cd05211 100 IFAPCALGNVIDLENA-------KKLK-AKVVAEGANNPTTD--EALRILHERGIVVAP 148 (217)
T ss_pred EEeeccccCccChhhH-------hhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcEEEC
Confidence 9999996543333332 3332 34555555554433 567788888877764
No 229
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.73 E-value=0.00023 Score=65.90 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=49.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHh----C-----CCccCCCHHHHhhcCCEEEEeeCC
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS----L-----GAKYQPSPDEVAASCDVTFAMLAD 136 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~----~-----g~~~~~~~~~~~~~aDivi~~vp~ 136 (358)
.++||+|||+|.+|..+|..+...|. ++.++|++.++++.... . ......+..+.+++||+||++.-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 44699999999999999999998886 79999998776543221 1 112222333558999999998743
No 230
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.72 E-value=0.00011 Score=68.60 Aligned_cols=88 Identities=9% Similarity=0.073 Sum_probs=57.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHC-CCcEEE-EcCCccchhhHHh-------------------CCCccCCCHHHHhhcCCE
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDV 129 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~-g~~V~~-~~~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDi 129 (358)
+||||+|+|+||+.+++.+... ++++.+ ++++++....+.. .++....+.++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 5899999999999999998764 577665 5655433222211 123344567788888999
Q ss_pred EEEeeCChhhHhhhhcccccccccCCCCCEEEEccC
Q 018303 130 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 130 vi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~ 165 (358)
|+.|+|.. ...... + ..++.|..+|+.+.
T Consensus 82 VIdaT~~~-~~~e~a---~---~~~~aGk~VI~~~~ 110 (341)
T PRK04207 82 VVDATPGG-VGAKNK---E---LYEKAGVKAIFQGG 110 (341)
T ss_pred EEECCCch-hhHHHH---H---HHHHCCCEEEEcCC
Confidence 99999744 333333 2 23445677776654
No 231
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.72 E-value=0.00014 Score=65.52 Aligned_cols=77 Identities=22% Similarity=0.316 Sum_probs=62.0
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.+++|.|||-| .+|+.+|..|...|..|+++.... .++.+.+++||+||.+++.+. ++
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~----~i- 214 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPD----LI- 214 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCC----cC-
Confidence 5788999999999 999999999999999999985421 246688999999999997543 23
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
.. .++++|+++||++..
T Consensus 215 -~~---~~vk~GavVIDvGi~ 231 (285)
T PRK14191 215 -KA---SMVKKGAVVVDIGIN 231 (285)
T ss_pred -CH---HHcCCCcEEEEeecc
Confidence 12 246999999999753
No 232
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.71 E-value=8e-05 Score=72.76 Aligned_cols=96 Identities=20% Similarity=0.295 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC--C-----------------CH--------
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--P-----------------SP-------- 120 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~--~-----------------~~-------- 120 (358)
..+.+|.|+|+|.+|...++.++..|.+|+++|+++++.+...+.|..+. + +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 34679999999999999999999999999999999988887777776521 1 10
Q ss_pred HHHhhcCCEEEEeeCChhh-HhhhhcccccccccCCCCCEEEEccC
Q 018303 121 DEVAASCDVTFAMLADPES-AMDVACGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 121 ~~~~~~aDivi~~vp~~~~-~~~~~~~~~~~~~~l~~~~~vi~~s~ 165 (358)
.+.++.+|+||.++..+.. ...++ .++.++.|++|.++++++-
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~li--t~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLI--TAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchH--HHHHHHhcCCCCEEEEEcc
Confidence 1112469999999953221 12222 1455678999999999975
No 233
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.70 E-value=6.7e-05 Score=71.69 Aligned_cols=106 Identities=27% Similarity=0.345 Sum_probs=67.4
Q ss_pred EEEEcCChhHHHHHHHHHHCC-C-cEEEEcCCccchhhHHhC----CC-----cc--CCCHHHHhhcCCEEEEeeCChhh
Q 018303 73 IGFLGMGIMGTPMAQNLLKAG-C-DVTVWNRTKSKCDPLISL----GA-----KY--QPSPDEVAASCDVTFAMLADPES 139 (358)
Q Consensus 73 IgIIG~G~iG~~~a~~l~~~g-~-~V~~~~~~~~~~~~~~~~----g~-----~~--~~~~~~~~~~aDivi~~vp~~~~ 139 (358)
|+|+|+|.+|+.+++.|.+.+ + +|++.||+.++.+.+.+. .+ .. ..++.++++++|+||.|+|.. .
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence 789999999999999999876 4 899999999887776542 11 11 123567889999999999743 4
Q ss_pred HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 186 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~ 186 (358)
...++ + ..+..|...||++- .......+.+..++.++.++
T Consensus 80 ~~~v~---~---~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l 119 (386)
T PF03435_consen 80 GEPVA---R---ACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTAL 119 (386)
T ss_dssp HHHHH---H---HHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE
T ss_pred hHHHH---H---HHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEE
Confidence 44444 2 33556777887322 23344455555655565444
No 234
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.65 E-value=0.00017 Score=62.10 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 102 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~ 102 (358)
.+...+|+|+|+|.+|+.+|..|+..|. +++++|++
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4566799999999999999999999998 69999987
No 235
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.65 E-value=0.00027 Score=64.27 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-----CC--ccCCC---HHHHhhcCCEEEEeeCC
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-----GA--KYQPS---PDEVAASCDVTFAMLAD 136 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-----g~--~~~~~---~~~~~~~aDivi~~vp~ 136 (358)
..++++.|+|+|..|++++..|...|. +|.+++|+.++.+.+.+. +. ....+ ..+.+..+|+||-++|.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 456799999999999999999999996 689999999887776542 11 01112 23456789999999985
Q ss_pred hhhHh-h-hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 137 PESAM-D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 137 ~~~~~-~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
...-. . .+ + ...+.++.++.|+.=.+..+ .+.+..++.|...++
T Consensus 205 Gm~~~~~~~~--~---~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 205 GMPAHPGTAF--D---VSCLTKDHWVGDVVYMPIET--ELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCCCC--C---HHHcCCCcEEEEcccCCCCC--HHHHHHHHCCCEEEc
Confidence 43211 0 11 1 13466778888886544332 356666666655443
No 236
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.64 E-value=5.4e-05 Score=67.76 Aligned_cols=96 Identities=25% Similarity=0.360 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CC--c----cCCCHHHHhhcCCEEEEeeCC-hhh
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GA--K----YQPSPDEVAASCDVTFAMLAD-PES 139 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~--~----~~~~~~~~~~~aDivi~~vp~-~~~ 139 (358)
...-+|.|||.|-+|..-|+.+...|-+|++.|+|.++...+.+. +. . ....+++.+.++|+||-++-- ...
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence 344589999999999999999999999999999998887766542 11 1 123567888999999988721 234
Q ss_pred HhhhhcccccccccCCCCCEEEEccC
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~ 165 (358)
...++ ..+..++|+||+++||++-
T Consensus 246 aPkLv--t~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 246 APKLV--TREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred Cceeh--hHHHHHhcCCCcEEEEEEE
Confidence 44455 3677899999999999954
No 237
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.62 E-value=0.00028 Score=63.85 Aligned_cols=114 Identities=24% Similarity=0.241 Sum_probs=79.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC----CC-ccCCCHHHH--hhcCCEEEEeeCChh
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL----GA-KYQPSPDEV--AASCDVTFAMLADPE 138 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~----g~-~~~~~~~~~--~~~aDivi~~vp~~~ 138 (358)
...++++.|+|+|-.+++++..|+..|. +|.+++|+.++.+.+.+. +. .......++ ..++|+||.++|...
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm 202 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM 202 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence 3456899999999999999999999995 799999999988877653 11 011122222 226999999999665
Q ss_pred hHhh---hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 139 SAMD---VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 139 ~~~~---~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
.-.. .+ . ...++++.++.|+-=.+..+ .+.+..++.|...++
T Consensus 203 ~~~~~~~~~---~--~~~l~~~~~v~D~vY~P~~T--plL~~A~~~G~~~id 247 (283)
T COG0169 203 AGPEGDSPV---P--AELLPKGAIVYDVVYNPLET--PLLREARAQGAKTID 247 (283)
T ss_pred CCCCCCCCC---c--HHhcCcCCEEEEeccCCCCC--HHHHHHHHcCCeEEC
Confidence 4431 22 1 45678999999996655543 366666666655544
No 238
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.61 E-value=0.0004 Score=58.72 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=64.1
Q ss_pred CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchh----hHHhCCCccCCC----HHHHhhcCCEEEEeeCCh
Q 018303 67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCD----PLISLGAKYQPS----PDEVAASCDVTFAMLADP 137 (358)
Q Consensus 67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~----~~~~~g~~~~~~----~~~~~~~aDivi~~vp~~ 137 (358)
++++++|.|||-+. +|+.++..|...|..|++++.+.-... ...+. -....+ +.+.+++||+||.+++.+
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs-~t~~~~~~~~l~~~~~~ADIVIsAvG~~ 137 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHE-KHHVTDEEAMTLDCLSQSDVVITGVPSP 137 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccc-cccccchhhHHHHHhhhCCEEEEccCCC
Confidence 68889999999865 699999999999999999975432110 00000 000013 678899999999999865
Q ss_pred hhHhhhhcccccccccCCCCCEEEEccCCC
Q 018303 138 ESAMDVACGKHGAASGMGPGKGYVDVSTVD 167 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~ 167 (358)
... + . .+.+++|+++||++...
T Consensus 138 ~~~---i--~---~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 138 NYK---V--P---TELLKDGAICINFASIK 159 (197)
T ss_pred CCc---c--C---HHHcCCCcEEEEcCCCc
Confidence 430 2 1 23478999999997553
No 239
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.59 E-value=0.00031 Score=63.08 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=62.2
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||-+ .+|+.++..|...|..|+++.... .++.+..++||+||.+++.+.- +
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~----i- 214 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNL----I- 214 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccc----c-
Confidence 6789999999998 889999999999999999885421 3567889999999999975533 3
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
. ..++++|+++||++..
T Consensus 215 -~---~~~vk~gavvIDvGin 231 (281)
T PRK14183 215 -T---EDMVKEGAIVIDIGIN 231 (281)
T ss_pred -C---HHHcCCCcEEEEeecc
Confidence 1 2357899999999743
No 240
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.59 E-value=0.00024 Score=63.82 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=63.4
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||.+ ..|+.++..|...|..|+.+.++. .++.+.+++||+||.+++.+ +++
T Consensus 149 ~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~----~lv- 209 (279)
T PRK14178 149 SIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKA----GFI- 209 (279)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcc----ccc-
Confidence 5788999999999 999999999999999999987642 36778899999999999754 344
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
.++ .+++|+++||++..
T Consensus 210 -~~~---~vk~GavVIDVgi~ 226 (279)
T PRK14178 210 -TPD---MVKPGATVIDVGIN 226 (279)
T ss_pred -CHH---HcCCCcEEEEeecc
Confidence 233 36999999999754
No 241
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.59 E-value=0.0002 Score=56.16 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=64.4
Q ss_pred cCChhHHHHHHHHHHC----CCcEE-EEcCC--ccchhhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhhccc
Q 018303 77 GMGIMGTPMAQNLLKA----GCDVT-VWNRT--KSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVACGK 147 (358)
Q Consensus 77 G~G~iG~~~a~~l~~~----g~~V~-~~~~~--~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~~~~ 147 (358)
|+|.||+.+++.+.+. +++|. +++|+ ..........+.....++++++. ..|+||-|.+ +......+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~-~~~~~~~~--- 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTS-SEAVAEYY--- 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SS-CHHHHHHH---
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCC-chHHHHHH---
Confidence 8999999999999875 55654 57777 11111111223556789999998 8999999975 55555555
Q ss_pred ccccccCCCCCEEEEccCCChh---HHHHHHHHHHhcCCeE
Q 018303 148 HGAASGMGPGKGYVDVSTVDGD---TSKLINGHIKATGASF 185 (358)
Q Consensus 148 ~~~~~~l~~~~~vi~~s~~~~~---~~~~l~~~l~~~~~~~ 185 (358)
.+.++.|..||..+-+... ..+.|.+..++++..+
T Consensus 77 ---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 77 ---EKALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp ---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred ---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 2456789999977665444 4566666666666554
No 242
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.58 E-value=0.00018 Score=66.47 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=49.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhh----HHhCC-----C-ccCCCHHHHhhcCCEEEEeeCCh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDP----LISLG-----A-KYQPSPDEVAASCDVTFAMLADP 137 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~----~~~~g-----~-~~~~~~~~~~~~aDivi~~vp~~ 137 (358)
|+|+|||+|.+|..+|..++..| .+|.++|+++++.+. +.+.. . ....+. +.+++||+|+++++.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 58999999999999999999988 589999998866542 22110 0 112344 5578999999999753
No 243
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.57 E-value=0.0002 Score=66.36 Aligned_cols=113 Identities=15% Similarity=0.199 Sum_probs=76.6
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHH-CC-CcEEEEcCCccchhhHHhC-CCccCCCHHHHhhcCCEEEEeeCChhhHhh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMD 142 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~-~g-~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~vp~~~~~~~ 142 (358)
++.+++|.|+|+ |.||+.+++.|.. .| .++++++|+.++...+... +.....++++.+.++|+|+.++..+. .
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~---~ 228 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK---G 228 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc---C
Confidence 567899999999 8999999999975 45 5899999987776665443 11122367788999999998884222 2
Q ss_pred h-hcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303 143 V-ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192 (358)
Q Consensus 143 ~-~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 192 (358)
+ + ++ ..++++.++||.+.-.-++. .+ ...++.+++..+..
T Consensus 229 ~~I--~~---~~l~~~~~viDiAvPRDVd~-~v----~~~~V~v~~gG~V~ 269 (340)
T PRK14982 229 VEI--DP---ETLKKPCLMIDGGYPKNLDT-KV----QGPGIHVLKGGIVE 269 (340)
T ss_pred CcC--CH---HHhCCCeEEEEecCCCCCCc-cc----CCCCEEEEeCCccc
Confidence 2 3 22 24578999999977544443 11 22456666654433
No 244
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.57 E-value=0.00063 Score=66.13 Aligned_cols=109 Identities=18% Similarity=0.283 Sum_probs=78.6
Q ss_pred CCCeEEEEcC----ChhHHHHHHHHHHCCC--cEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhh
Q 018303 69 LPGRIGFLGM----GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMD 142 (358)
Q Consensus 69 ~~~~IgIIG~----G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~ 142 (358)
+.++|+|||+ |++|..+.+.+.+.|+ +|+.+++..+.. .|+..+.+++|+-...|++++++| +..+..
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp-~~~~~~ 79 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVP-AKYVPQ 79 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecC-HHHHHH
Confidence 4468999999 8899999999999887 577677654322 367778899998888999999997 778888
Q ss_pred hhcccccccccCCCCCEEEEccCCCh-------hHHHHHHHHHHhcCCeEecC
Q 018303 143 VACGKHGAASGMGPGKGYVDVSTVDG-------DTSKLINGHIKATGASFLEA 188 (358)
Q Consensus 143 ~~~~~~~~~~~l~~~~~vi~~s~~~~-------~~~~~l~~~l~~~~~~~~~~ 188 (358)
++ ++..+. .-..++| ++.+.. ..++++.+..++.++.+++.
T Consensus 80 ~l---~e~~~~-gv~~~vi-~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 80 VV---EECGEK-GVKGAVV-ITAGFKEVGEEGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred HH---HHHHhc-CCCEEEE-ECCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence 88 555543 3333333 233322 23567888888888887763
No 245
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.56 E-value=0.018 Score=53.82 Aligned_cols=264 Identities=17% Similarity=0.267 Sum_probs=155.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHh----C-----------------C----CccCCCHHHHh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS----L-----------------G----AKYQPSPDEVA 124 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~----~-----------------g----~~~~~~~~~~~ 124 (358)
.+|.|+|+|..+-.+|..+...+ ++|-+++|...+.+.+.+ . | -....+.+++.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 47999999999999999999766 478889996655444321 0 1 02355778888
Q ss_pred hcCCEEEEeeCChhhHhhhhcccccccc-cCCCCCEEEEccCCChhHHHHHHHHHHhc--CCeEecCC-------CCCCC
Q 018303 125 ASCDVTFAMLADPESAMDVACGKHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLEAP-------VSGSK 194 (358)
Q Consensus 125 ~~aDivi~~vp~~~~~~~~~~~~~~~~~-~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~~~-------~~~~~ 194 (358)
.+=|.+|+||| ..+-..++ +++-. .++.=+.+|-+|..-... .-+...+.+. .+.+++.. .+...
T Consensus 82 g~WdtlILavt-aDAY~~VL---~ql~~~~L~~vk~iVLvSPtfGS~-~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 82 GEWDTLILAVT-ADAYLDVL---QQLPWEVLKRVKSIVLVSPTFGSH-LLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred ccccEEEEEec-hHHHHHHH---HhcCHHHHhhCCEEEEECcccchH-HHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 88999999997 56666676 44432 233334555555433222 1233333332 23333321 11111
Q ss_pred Cc------CCCCceEEEec--CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHH-----------------------
Q 018303 195 KP------AEDGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVV----------------------- 243 (358)
Q Consensus 195 ~~------~~~~~~~~~~~--g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~----------------------- 243 (358)
+. +-+..+ ++.+ ++...++++..+++.+|-....+..+-.++...+..
T Consensus 157 ~~~~vlt~~vK~ki-YigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~ 235 (429)
T PF10100_consen 157 QPNRVLTTAVKKKI-YIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVP 235 (429)
T ss_pred CcceehhhhhhceE-EEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCc
Confidence 11 011111 2222 256778999999999998777666543333322110
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc-------chhhhcc--cc-----------
Q 018303 244 -------------NMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS-------APMYSLK--GP----------- 290 (358)
Q Consensus 244 -------------n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~-------s~~~~~~--~~----------- 290 (358)
..+..-|..+..|.+.+..+.|++.-.+.+.+....-. ..-.+.+ .+
T Consensus 236 kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVR 315 (429)
T PF10100_consen 236 KYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVR 315 (429)
T ss_pred ceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHH
Confidence 13444577889999999999999988888888763110 0000000 00
Q ss_pred --ccccCCCC-C---C----C----------------chhhH----HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018303 291 --SMIESLYP-T---A----F----------------PLKHQ----QKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 340 (358)
Q Consensus 291 --~~~~~~~~-~---~----~----------------~~~~~----~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~ 340 (358)
.++-+-|+ | | | .++.+ .+-+..+..+|+.+++++|.++...+.++.+.++
T Consensus 316 YtsiLIDPFS~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~~ 395 (429)
T PF10100_consen 316 YTSILIDPFSEPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLSQ 395 (429)
T ss_pred hhhheeCCCCCCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 11111110 0 0 0 12222 2236888999999999999999999888887764
No 246
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.56 E-value=0.00066 Score=61.91 Aligned_cols=112 Identities=19% Similarity=0.252 Sum_probs=79.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHH---CCCcEE-EEcCCccchhhHHhC-C---CccCCCHHHHhhcC--CEEEEeeCChhh
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLK---AGCDVT-VWNRTKSKCDPLISL-G---AKYQPSPDEVAASC--DVTFAMLADPES 139 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~---~g~~V~-~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~a--Divi~~vp~~~~ 139 (358)
.-|+||+|+|.|++-+++.+.. .++.|. +++|+.+++..+++. + .+.+.+.++++++. |+|.+..|.+.+
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH 85 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH 85 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccH
Confidence 3589999999999999999864 367655 578988777776653 3 35678999999875 999999987766
Q ss_pred HhhhhcccccccccCCCCC-EEEEcc-CCChhHHHHHHHHHHhcCCeEecC
Q 018303 140 AMDVACGKHGAASGMGPGK-GYVDVS-TVDGDTSKLINGHIKATGASFLEA 188 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~-~vi~~s-~~~~~~~~~l~~~l~~~~~~~~~~ 188 (358)
.+-+. ..+..|+ +++.-- .....+.+.+.++.+.+++.+++.
T Consensus 86 ~evv~-------l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 86 YEVVM-------LALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred HHHHH-------HHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 55544 1223333 444332 234566778899999888777653
No 247
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.55 E-value=0.00028 Score=66.14 Aligned_cols=91 Identities=25% Similarity=0.338 Sum_probs=57.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHC-CCcEEE-EcCCccchhhHHhC-----CC--ccCCCHHH-HhhcCCEEEEeeCChhh
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDPLISL-----GA--KYQPSPDE-VAASCDVTFAMLADPES 139 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~-g~~V~~-~~~~~~~~~~~~~~-----g~--~~~~~~~~-~~~~aDivi~~vp~~~~ 139 (358)
++|+|||+ |.+|+.+++.|... ++++.. +++. +..+.+.+. +. ..+.+.++ ..+++|+|++|+|.. .
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~-~ 80 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG-V 80 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH-H
Confidence 68999997 99999999999876 567654 5542 222222210 10 01223332 456799999999854 4
Q ss_pred HhhhhcccccccccCCCCCEEEEccCCChh
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVSTVDGD 169 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~ 169 (358)
..+++ .. .++.|..|||.|.....
T Consensus 81 ~~~~v---~~---a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 81 SMDLA---PQ---LLEAGVKVIDLSADFRL 104 (343)
T ss_pred HHHHH---HH---HHhCCCEEEECCcccCC
Confidence 34444 22 23578999999876544
No 248
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.54 E-value=0.00032 Score=65.81 Aligned_cols=93 Identities=20% Similarity=0.311 Sum_probs=60.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHC-CCcEE-EEcCCccchhhHHh-C----C---Ccc-CCCHHHHhhcCCEEEEeeCChh
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-L----G---AKY-QPSPDEVAASCDVTFAMLADPE 138 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~-~----g---~~~-~~~~~~~~~~aDivi~~vp~~~ 138 (358)
++|+|||+ |.+|+.+++.|... ++++. +++++....+.+.+ . + ..+ ..+.+++++++|+|++|+|. .
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~-~ 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPH-G 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCc-h
Confidence 48999998 99999999999976 56777 44544322222221 1 1 111 11456666689999999984 4
Q ss_pred hHhhhhcccccccccCCCCCEEEEccCCChhH
Q 018303 139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 170 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~ 170 (358)
....+. ..+ ...|..|||.|...-.+
T Consensus 80 ~s~~~~---~~~---~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 80 VSAELA---PEL---LAAGVKVIDLSADFRLK 105 (346)
T ss_pred HHHHHH---HHH---HhCCCEEEeCChhhhcC
Confidence 445554 333 34789999998764443
No 249
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=97.54 E-value=0.00021 Score=63.67 Aligned_cols=95 Identities=16% Similarity=0.051 Sum_probs=72.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
...++.+-|-|+|.+|+.-|+.|+.+|..|++...+|=.+-...-+|..+ ..++|++++.||++.++. -++++
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V-~tm~ea~~e~difVTtTG----c~dii-- 283 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEV-TTLEEAIREVDIFVTTTG----CKDII-- 283 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEe-eeHHHhhhcCCEEEEccC----Ccchh--
Confidence 34566677779999999999999999999999988775443333346554 489999999999998874 34455
Q ss_pred cccccccCCCCCEEEEccCCCh
Q 018303 147 KHGAASGMGPGKGYVDVSTVDG 168 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~~~ 168 (358)
..+-+..|+.++++.|++.-..
T Consensus 284 ~~~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 284 TGEHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred hHHHHHhCcCCcEEeccccccc
Confidence 2556788999999999866543
No 250
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.54 E-value=0.00059 Score=63.00 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=47.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHH----hC-------CCccCCCHHHHhhcCCEEEEeeC
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----SL-------GAKYQPSPDEVAASCDVTFAMLA 135 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~----~~-------g~~~~~~~~~~~~~aDivi~~vp 135 (358)
+||+|||+|.+|..+|..+...|. ++.++|++.++++... +. .+....+.++ +++||+||++.-
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG 80 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAG 80 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCC
Confidence 589999999999999999987774 6899999876543221 11 1222346665 799999999763
No 251
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.53 E-value=0.0015 Score=63.12 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=47.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCCh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP 137 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~ 137 (358)
++|.|||.|.+|.++|+.|.+.|++|.++|+++..........-....+.+...+++|+||.+.+.+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 5899999999999999999999999999998765433211000011223344457799888887544
No 252
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.52 E-value=0.00025 Score=65.55 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=46.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML 134 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v 134 (358)
++.+++|.|||+|.||..+++.|.+.|. +|++++|+.... .+.+. .....+...++|+||.|+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~----~~~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTV----VREELSFQDPYDVIFFGS 234 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhh----hhhhhhcccCCCEEEEcC
Confidence 5678899999999999999999999995 699999987531 11110 001114456899999873
No 253
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.51 E-value=9.3e-05 Score=60.10 Aligned_cols=65 Identities=15% Similarity=0.267 Sum_probs=48.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCC--CcEEEEcCCccchhhHHh--------C--CCccCCCHHHHhhcCCEEEEeeC
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLIS--------L--GAKYQPSPDEVAASCDVTFAMLA 135 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~--------~--g~~~~~~~~~~~~~aDivi~~vp 135 (358)
|||+|||+ |++|..+|..|...+ -++.++|+++++.+.... . ......+..+.+++||+|+++..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 58999999 999999999998766 479999998765443221 0 12223355677889999999884
No 254
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.51 E-value=0.00014 Score=62.92 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 103 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~ 103 (358)
.+...+|.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 3556799999999999999999999997 799999874
No 255
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.47 E-value=0.0013 Score=51.19 Aligned_cols=85 Identities=22% Similarity=0.391 Sum_probs=59.0
Q ss_pred EEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc----CCCHHHH----hhcCCEEEEeeCChhhHhhhh
Q 018303 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEV----AASCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 73 IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~----~~~aDivi~~vp~~~~~~~~~ 144 (358)
|-|+|+|.+|..+++.|.+.+.+|.+.+++++..+.+.+.+... ..+.+.+ ++++|.|+++++.+.....+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 56899999999999999997779999999999888888776432 1222222 467999999997654444443
Q ss_pred cccccccccCCCCCEEE
Q 018303 145 CGKHGAASGMGPGKGYV 161 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi 161 (358)
..+..+.+...++
T Consensus 81 ----~~~r~~~~~~~ii 93 (116)
T PF02254_consen 81 ----LLARELNPDIRII 93 (116)
T ss_dssp ----HHHHHHTTTSEEE
T ss_pred ----HHHHHHCCCCeEE
Confidence 2334444555555
No 256
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.47 E-value=0.00081 Score=61.36 Aligned_cols=115 Identities=16% Similarity=0.108 Sum_probs=73.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCcc---chhhHHhC-C------CccCCCH------HHHhhcCCE
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKS---KCDPLISL-G------AKYQPSP------DEVAASCDV 129 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~---~~~~~~~~-g------~~~~~~~------~~~~~~aDi 129 (358)
+..++++.|+|+|..+++++..+...|. +|.+++|+++ +.+.+.+. + +.. .++ .+.+.++|+
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~aDi 199 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEALASADI 199 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhhcccCCE
Confidence 3566799999999999999999998886 7999999853 55555431 1 111 222 234567999
Q ss_pred EEEeeCChhh--HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 130 TFAMLADPES--AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 130 vi~~vp~~~~--~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
||.++|.... ..... ..-...++++.++.|+.=.+..+ .+.+..+++|...++
T Consensus 200 vINaTp~Gm~~~~~~~~---~~~~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 200 LTNGTKVGMKPLENESL---VNDISLLHPGLLVTECVYNPHMT--KLLQQAQQAGCKTID 254 (288)
T ss_pred EEECCCCCCCCCCCCCC---CCcHHHCCCCCEEEEecCCCccC--HHHHHHHHCCCeEEC
Confidence 9999985432 11111 00113467888899886544332 466666666665554
No 257
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.46 E-value=0.00025 Score=65.54 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=47.6
Q ss_pred EEEEcCChhHHHHHHHHHH-CCCcEEE-EcCCccchhhHHh-------------------CCCccCCCHHHHhhcCCEEE
Q 018303 73 IGFLGMGIMGTPMAQNLLK-AGCDVTV-WNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDVTF 131 (358)
Q Consensus 73 IgIIG~G~iG~~~a~~l~~-~g~~V~~-~~~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDivi 131 (358)
|||+|+|+||+.+++.+.. .+++|.+ .|.+++....+.. .++....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6899999999999999875 3567654 6665553323322 12333557899999999999
Q ss_pred EeeCChhh
Q 018303 132 AMLADPES 139 (358)
Q Consensus 132 ~~vp~~~~ 139 (358)
.|+|....
T Consensus 81 e~Tp~~~~ 88 (333)
T TIGR01546 81 DATPGGIG 88 (333)
T ss_pred ECCCCCCC
Confidence 99986543
No 258
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.45 E-value=0.00022 Score=59.19 Aligned_cols=65 Identities=23% Similarity=0.227 Sum_probs=49.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-----CCCccCCCHHHHhhcCCEEEEeeC
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----LGAKYQPSPDEVAASCDVTFAMLA 135 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~aDivi~~vp 135 (358)
|||+|||+ |..|+.+++-+...||+|+..-|++.+...... ..+.-.+++.+.+..-|+||.+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 68999998 999999999999999999999999987654321 112222233466778899998874
No 259
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.45 E-value=0.00033 Score=68.33 Aligned_cols=67 Identities=25% Similarity=0.314 Sum_probs=52.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHh-CCCcc-------CCCHHHH-hhcCCEEEEeeCCh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKY-------QPSPDEV-AASCDVTFAMLADP 137 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-~g~~~-------~~~~~~~-~~~aDivi~~vp~~ 137 (358)
|+|.|+|+|.+|+.+++.|...|++|.++++++++.+.+.+ .++.. ...+.++ +.++|.|+++++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~ 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence 58999999999999999999999999999999988777654 33221 1123344 67899999999753
No 260
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.44 E-value=0.0011 Score=66.48 Aligned_cols=86 Identities=17% Similarity=0.294 Sum_probs=63.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc----CCCHHHH-----hhcCCEEEEeeCChhhHh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEV-----AASCDVTFAMLADPESAM 141 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~-----~~~aDivi~~vp~~~~~~ 141 (358)
-+|-|+|+|++|+.+++.|.+.|++|.+.|.++++.+.+++.|... ..+. +. ++++|.++++++++.+..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~-~~L~~a~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANE-EIMQLAHLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCH-HHHHhcCccccCEEEEEcCChHHHH
Confidence 4789999999999999999999999999999999988887765422 1222 22 357999999998766655
Q ss_pred hhhcccccccccCCCCCEEE
Q 018303 142 DVACGKHGAASGMGPGKGYV 161 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi 161 (358)
.++ ....+ ..++..++
T Consensus 497 ~iv---~~~~~-~~~~~~ii 512 (558)
T PRK10669 497 EIV---ASARE-KRPDIEII 512 (558)
T ss_pred HHH---HHHHH-HCCCCeEE
Confidence 555 32322 34555555
No 261
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.43 E-value=0.00071 Score=68.32 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=65.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc----CCCHHHH----hhcCCEEEEeeCChhhHh
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEV----AASCDVTFAMLADPESAM 141 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~----~~~aDivi~~vp~~~~~~ 141 (358)
..+|-|+|+|++|+.+++.|.+.|+++++.|.|+++.+.+++.|... .++.+-+ ++++|.++++++++....
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 35799999999999999999999999999999999988887766432 1222211 457999999998766665
Q ss_pred hhhcccccccccCCCCCEEE
Q 018303 142 DVACGKHGAASGMGPGKGYV 161 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi 161 (358)
.++ .. ...+.|+..++
T Consensus 480 ~i~---~~-~r~~~p~~~Ii 495 (601)
T PRK03659 480 KIV---EL-CQQHFPHLHIL 495 (601)
T ss_pred HHH---HH-HHHHCCCCeEE
Confidence 555 22 33455665666
No 262
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.42 E-value=0.00078 Score=60.82 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||- ..+|+.++..|...|..|+++.... .++.+..++||+||.+++.+. ++
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGkp~----~i- 212 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGRPH----LI- 212 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcC----cc-
Confidence 578899999998 5679999999999999999886532 367788999999999998653 33
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
+ .+++++|+++||++..
T Consensus 213 -~---~~~vk~GavVIDVGin 229 (287)
T PRK14173 213 -T---PEMVRPGAVVVDVGIN 229 (287)
T ss_pred -C---HHHcCCCCEEEEccCc
Confidence 1 2347899999999754
No 263
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.41 E-value=0.00079 Score=60.61 Aligned_cols=77 Identities=22% Similarity=0.283 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||- ..+|+.++..|...|..|++++... .++.+..++||+||.+++.+.. +
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk~~~----i- 216 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGKPEF----I- 216 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCCcCc----c-
Confidence 678899999998 5579999999999999999987532 3677889999999999986543 3
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
. ...+++|+++||++..
T Consensus 217 -~---~~~ik~gavVIDvGin 233 (284)
T PRK14177 217 -K---ADWISEGAVLLDAGYN 233 (284)
T ss_pred -C---HHHcCCCCEEEEecCc
Confidence 1 2357899999999754
No 264
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.41 E-value=0.0007 Score=60.38 Aligned_cols=77 Identities=25% Similarity=0.352 Sum_probs=62.7
Q ss_pred CCCCCeEEEEcCChh-HHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~i-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
+++++++.|||-+++ |+.++..|...++.|+++.... .++.+..+++|+|+.++-.+. ++
T Consensus 153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p~----~i- 213 (283)
T COG0190 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKPH----FI- 213 (283)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCcc----cc-
Confidence 678999999999875 9999999999999999997643 367788999999999996543 33
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
. .+++++|+++||++..
T Consensus 214 -~---~d~vk~gavVIDVGin 230 (283)
T COG0190 214 -K---ADMVKPGAVVIDVGIN 230 (283)
T ss_pred -c---cccccCCCEEEecCCc
Confidence 1 2458999999998654
No 265
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.40 E-value=0.0008 Score=61.05 Aligned_cols=77 Identities=25% Similarity=0.334 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||-+ -+|+.++..|...|..|+++... +.++.+..++||+||.+++.+. ++
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvIsAvGkp~----~i- 215 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------TQDLASITREADILVAAAGRPN----LI- 215 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcC----cc-
Confidence 5788999999985 57999999999999999998643 1367788999999999998653 33
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
. ..++++|+++||++..
T Consensus 216 -~---~~~ik~gavVIDvGin 232 (297)
T PRK14186 216 -G---AEMVKPGAVVVDVGIH 232 (297)
T ss_pred -C---HHHcCCCCEEEEeccc
Confidence 1 2357899999999754
No 266
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.40 E-value=0.00082 Score=60.39 Aligned_cols=76 Identities=25% Similarity=0.348 Sum_probs=61.5
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||-+ .+|+.++..|...|..|+++... +.++.+..++||+||.+++.+.. +
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~----i- 215 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKF----I- 215 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCc----c-
Confidence 5788999999985 57999999999999999998753 23677889999999999986543 3
Q ss_pred ccccccccCCCCCEEEEccC
Q 018303 146 GKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~ 165 (358)
+ .+.+++|+++||++.
T Consensus 216 -~---~~~ik~gavVIDvGi 231 (278)
T PRK14172 216 -D---EEYVKEGAIVIDVGT 231 (278)
T ss_pred -C---HHHcCCCcEEEEeec
Confidence 1 134789999999954
No 267
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.39 E-value=0.00086 Score=60.39 Aligned_cols=77 Identities=21% Similarity=0.342 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
+..++++.|||-+ .+|+.++..|...|..|+++.... .++.+..++||+||.+++.+.. +
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p~~----i- 213 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVPHF----I- 213 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCcCc----c-
Confidence 5788999999985 579999999999999999886432 3677889999999999986543 3
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
+ .+++++|+++||++..
T Consensus 214 -~---~~~vk~GavVIDvGin 230 (282)
T PRK14169 214 -G---ADAVKPGAVVIDVGIS 230 (282)
T ss_pred -C---HHHcCCCcEEEEeecc
Confidence 1 1357899999999753
No 268
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.39 E-value=0.00088 Score=60.32 Aligned_cols=78 Identities=24% Similarity=0.269 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||-+ .+|+.++..|...|..|+++.... .++.+..++||+||.+++.+.- +
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~~~~----i- 214 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGLAKF----V- 214 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCc----c-
Confidence 6789999999985 569999999999999999886421 3677889999999999986543 3
Q ss_pred ccccccccCCCCCEEEEccCCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTVD 167 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~ 167 (358)
. .+.+++|+++||++...
T Consensus 215 -~---~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 215 -K---KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred -C---HHHcCCCCEEEEccCcc
Confidence 1 13478999999997543
No 269
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.37 E-value=0.00043 Score=65.94 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=51.4
Q ss_pred CeEEEEcCChhHH-HHHHHHHHCCCcEEEEcCCccchhhHHhCCCc---c---------------C--CCHHH---Hhhc
Q 018303 71 GRIGFLGMGIMGT-PMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK---Y---------------Q--PSPDE---VAAS 126 (358)
Q Consensus 71 ~~IgIIG~G~iG~-~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~---~---------------~--~~~~~---~~~~ 126 (358)
|||.++|+|+||+ .+...|...|++|+++|+++..++.+.++|.. . . .+.++ .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 5899999999999 45888899999999999887777777665421 0 1 01122 3347
Q ss_pred CCEEEEeeCChhhHhhhh
Q 018303 127 CDVTFAMLADPESAMDVA 144 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~ 144 (358)
+|+|++++. +..++.+.
T Consensus 81 ~dlvt~~v~-~~~~~s~~ 97 (381)
T PRK02318 81 ADLVTTAVG-PNILPFIA 97 (381)
T ss_pred CCEEEeCCC-cccchhHH
Confidence 899998884 44444444
No 270
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.37 E-value=0.00092 Score=60.19 Aligned_cols=76 Identities=24% Similarity=0.239 Sum_probs=61.5
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||-+ .+|+.++..|...|..|+++.... .++.+..++||+||.+++.+.. +
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~----i- 214 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNL----L- 214 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----c-
Confidence 5788999999985 579999999999999999887532 3677889999999999986543 3
Q ss_pred ccccccccCCCCCEEEEccC
Q 018303 146 GKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~ 165 (358)
+. ..+++|+++||++.
T Consensus 215 -~~---~~vk~GavVIDvGi 230 (282)
T PRK14166 215 -RS---DMVKEGVIVVDVGI 230 (282)
T ss_pred -CH---HHcCCCCEEEEecc
Confidence 11 34789999999974
No 271
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.36 E-value=0.00096 Score=60.20 Aligned_cols=76 Identities=22% Similarity=0.395 Sum_probs=61.3
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||-+ -+|+.++..|...|..|+++... +.++.+..++||+||.++..+. ++
T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------------T~~L~~~~~~ADIvV~AvGkp~----~i- 216 (288)
T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------------THNLSSITSKADIVVAAIGSPL----KL- 216 (288)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCCC----cc-
Confidence 5788999999985 56999999999999999988742 2367788999999999998653 33
Q ss_pred ccccccccCCCCCEEEEccC
Q 018303 146 GKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~ 165 (358)
. ...+++|+++||++-
T Consensus 217 -~---~~~vk~GavVIDvGi 232 (288)
T PRK14171 217 -T---AEYFNPESIVIDVGI 232 (288)
T ss_pred -C---HHHcCCCCEEEEeec
Confidence 1 134789999999964
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.35 E-value=0.00061 Score=62.86 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=61.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCC-----CH-HHHhhcCCEEEEeeCChhhHhh
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP-----SP-DEVAASCDVTFAMLADPESAMD 142 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~-----~~-~~~~~~aDivi~~vp~~~~~~~ 142 (358)
.+.+|+|+|+|.+|..-.+.+++.|.+|+++++++++.+...+.|...+- +. +++-+.+|+++.++| +.....
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~ 244 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEP 244 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHH
Confidence 35799999999999998888888999999999999988777766543211 11 122222788888876 544444
Q ss_pred hhcccccccccCCCCCEEEEccC
Q 018303 143 VACGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 143 ~~~~~~~~~~~l~~~~~vi~~s~ 165 (358)
.+ ..++++..++-++-
T Consensus 245 ~l-------~~l~~~G~~v~vG~ 260 (339)
T COG1064 245 SL-------KALRRGGTLVLVGL 260 (339)
T ss_pred HH-------HHHhcCCEEEEECC
Confidence 43 45566666665543
No 273
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.34 E-value=0.00096 Score=60.19 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||- ..+|+.++..|...|..|+++... +.++.+.+++||+||.+++.+. ++
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~----~i- 215 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPK----LI- 215 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCC----cC-
Confidence 578899999998 567999999999999999998642 2367788999999999997554 34
Q ss_pred ccccccccCCCCCEEEEccCCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTVD 167 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~~ 167 (358)
+. +.+++|+++||++...
T Consensus 216 -~~---~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 216 -TA---DMVKEGAVVIDVGVNR 233 (284)
T ss_pred -CH---HHcCCCCEEEEeeccc
Confidence 22 3468999999997543
No 274
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.34 E-value=0.00099 Score=59.99 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=61.3
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++++++|.|||-+ .+|+.++..|...|..|+++.... .++.+..++||+||.+++.+.. +
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~----i- 215 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNF----I- 215 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCc----C-
Confidence 5788999999985 579999999999999999986532 3677788999999999986543 3
Q ss_pred ccccccccCCCCCEEEEccC
Q 018303 146 GKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~ 165 (358)
. ...+++|+++||++.
T Consensus 216 -~---~~~vk~gavVIDvGi 231 (282)
T PRK14180 216 -T---ADMVKEGAVVIDVGI 231 (282)
T ss_pred -C---HHHcCCCcEEEEecc
Confidence 1 134789999999964
No 275
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.34 E-value=0.00062 Score=58.81 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=53.1
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCC-CccCC-C-HHHHhhcCCEEEEeeCChhhHhh
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLG-AKYQP-S-PDEVAASCDVTFAMLADPESAMD 142 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g-~~~~~-~-~~~~~~~aDivi~~vp~~~~~~~ 142 (358)
++++++|.|||.|.+|...++.|.+.|.+|++++++... ...+.+.+ +.... . ..+.+.++|+||.++. ++++..
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~-d~elN~ 85 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATN-DPRVNE 85 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCC-CHHHHH
Confidence 678899999999999999999999999999999876432 22333322 21110 1 1234678898888885 455555
Q ss_pred hh
Q 018303 143 VA 144 (358)
Q Consensus 143 ~~ 144 (358)
.+
T Consensus 86 ~i 87 (202)
T PRK06718 86 QV 87 (202)
T ss_pred HH
Confidence 55
No 276
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.32 E-value=0.0011 Score=59.65 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=62.0
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHH--CCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLK--AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 143 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~--~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~ 143 (358)
++.++++.|||- ..+|+.++..|.. .+..|+++... +.++.+..++||+||.+++.+. +
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~----~ 216 (284)
T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAH----L 216 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcC----c
Confidence 578899999998 5679999999988 68899988653 2367888999999999998653 3
Q ss_pred hcccccccccCCCCCEEEEccCCC
Q 018303 144 ACGKHGAASGMGPGKGYVDVSTVD 167 (358)
Q Consensus 144 ~~~~~~~~~~l~~~~~vi~~s~~~ 167 (358)
+ . ...+++|+++||++...
T Consensus 217 i--~---~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 217 V--T---ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred c--C---HHHcCCCCEEEEccccc
Confidence 3 1 23578999999997543
No 277
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.31 E-value=0.0028 Score=64.94 Aligned_cols=119 Identities=11% Similarity=0.069 Sum_probs=91.5
Q ss_pred EEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec-CCCCCCCCcC--------CCC
Q 018303 130 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPA--------EDG 200 (358)
Q Consensus 130 vi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~--------~~~ 200 (358)
||+|+| ...+..++ +++.+.++++++|.|+++.+....+++.+.+......|++ +|+.|.+... -.+
T Consensus 1 vila~P-v~~~~~~~---~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAP-VAQTGPLL---ARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVG 76 (673)
T ss_pred CEEEcC-HHHHHHHH---HHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCC
Confidence 689997 78899999 8888889999999999999987777776666543345776 4777766443 246
Q ss_pred ceEEEecC---CHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHH
Q 018303 201 QLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMA 252 (358)
Q Consensus 201 ~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~ 252 (358)
..++++.. +++.++.+.++++.+|.+++.+.+..+...+.+++.+-.....+
T Consensus 77 ~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~ 131 (673)
T PRK11861 77 RNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFA 131 (673)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHH
Confidence 66666643 67788999999999999999999988888888887665444443
No 278
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.31 E-value=0.0013 Score=64.44 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=49.2
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEe
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 133 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~ 133 (358)
++.+++|.|||.|..|.+.|+.|.+.|++|.++|..+.....+...|+.......+-+.++|+||..
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 3556799999999999999999999999999999765444444455665432222335679988763
No 279
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.30 E-value=0.0012 Score=59.79 Aligned_cols=77 Identities=25% Similarity=0.295 Sum_probs=62.0
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||-+ .+|+.++..|...|..|+++.... .++.+..++||+||.+++.+.. +
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp~~----i- 217 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIPNF----V- 217 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCc----c-
Confidence 5788999999985 579999999999999999987532 3677889999999999986543 3
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
. ..++++|+++||++..
T Consensus 218 -~---~~~ik~gaiVIDVGin 234 (294)
T PRK14187 218 -K---YSWIKKGAIVIDVGIN 234 (294)
T ss_pred -C---HHHcCCCCEEEEeccc
Confidence 1 1347899999999643
No 280
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.30 E-value=0.0012 Score=59.89 Aligned_cols=77 Identities=26% Similarity=0.376 Sum_probs=62.5
Q ss_pred CCCCCeEEEEcCCh-hHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G~-iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||-+. +|+.++..|...|..|+++... +.++.+.+++||+||.++..+ +++
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~----~~i- 224 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQA----MMI- 224 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCc----Ccc-
Confidence 67889999999855 6999999999999999998653 236788899999999999764 344
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
. .+++++|+++||++..
T Consensus 225 -~---~~~vk~gavVIDvGin 241 (299)
T PLN02516 225 -K---GDWIKPGAAVIDVGTN 241 (299)
T ss_pred -C---HHHcCCCCEEEEeecc
Confidence 2 2458999999999753
No 281
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.29 E-value=0.0026 Score=51.65 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=67.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeCChhhH
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLADPESA 140 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp~~~~~ 140 (358)
+|.|||+|.+|..+++.|...|. ++.++|.+.-....+..+ |-..+....+.++ ..++-+...+.....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 58999999999999999999997 699998764332222211 2111111222222 124444444321111
Q ss_pred hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303 141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192 (358)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 192 (358)
.. ....+++-.++|++... ......+.+.+.+.++.++++...+
T Consensus 81 ~~-------~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 81 DN-------LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hh-------HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 11 12234566788877655 5556678888888888888877655
No 282
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.29 E-value=0.0021 Score=53.16 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=52.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC-CccC-CCH-HHHhhcCCEEEEeeCChhhHhhh
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG-AKYQ-PSP-DEVAASCDVTFAMLADPESAMDV 143 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-~~~~-~~~-~~~~~~aDivi~~vp~~~~~~~~ 143 (358)
++++++|.|||.|.+|...++.|.+.|++|+++++. ..+.+.+.+ +.+. ..+ ++-++++|+|+.++. +.++...
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~-d~e~N~~ 86 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELPYITWKQKTFSNDDIKDAHLIYAATN-QHAVNMM 86 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhccCcEEEecccChhcCCCceEEEECCC-CHHHHHH
Confidence 688899999999999999999999999999999643 334443321 1110 011 122578999999984 5555555
Q ss_pred h
Q 018303 144 A 144 (358)
Q Consensus 144 ~ 144 (358)
+
T Consensus 87 i 87 (157)
T PRK06719 87 V 87 (157)
T ss_pred H
Confidence 4
No 283
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.28 E-value=0.0023 Score=62.55 Aligned_cols=116 Identities=20% Similarity=0.255 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch-----hhHHhCCCccC--CCHHHHhhcCCEEEEeeCCh---
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQ--PSPDEVAASCDVTFAMLADP--- 137 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~-----~~~~~~g~~~~--~~~~~~~~~aDivi~~vp~~--- 137 (358)
+.+++|+|+|+|..|.++|+.|.+.|++|.++|+++... +.+...|+... ....+.+.++|+||+.-.-+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~~~ 91 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRIDS 91 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCCCc
Confidence 345689999999999999999999999999999865321 23555565442 22235467899988873111
Q ss_pred hhHhhhh------cccccccccCCCCCEEEEc-cCCChhHHHHHHHHHHhcCC
Q 018303 138 ESAMDVA------CGKHGAASGMGPGKGYVDV-STVDGDTSKLINGHIKATGA 183 (358)
Q Consensus 138 ~~~~~~~------~~~~~~~~~l~~~~~vi~~-s~~~~~~~~~l~~~l~~~~~ 183 (358)
+...... .+..+++....+..+|--+ |.|...+..-+...|...+.
T Consensus 92 p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~ 144 (458)
T PRK01710 92 PELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGY 144 (458)
T ss_pred hHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 1221111 0111122122222333333 55666677777777776554
No 284
>PLN02602 lactate dehydrogenase
Probab=97.27 E-value=0.0025 Score=59.67 Aligned_cols=64 Identities=16% Similarity=0.260 Sum_probs=46.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHH----hC----C-Ccc--CCCHHHHhhcCCEEEEeeC
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----SL----G-AKY--QPSPDEVAASCDVTFAMLA 135 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~----~~----g-~~~--~~~~~~~~~~aDivi~~vp 135 (358)
+||+|||+|++|..+|..+...+. ++.++|+++++++... +. + ... ..+.++ +++||+||++.-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCC
Confidence 699999999999999999987774 6899999876553321 10 1 122 234444 789999999964
No 285
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.27 E-value=0.0011 Score=61.30 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=46.3
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC--cEEEEcCCc--cchhhH----Hh----CC----CccCCCHHHHhhcCCEEEEe
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTK--SKCDPL----IS----LG----AKYQPSPDEVAASCDVTFAM 133 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~--~V~~~~~~~--~~~~~~----~~----~g----~~~~~~~~~~~~~aDivi~~ 133 (358)
|+|+|||+ |.+|..++..+...|+ +|.++|+++ ++.+.. .+ .+ +....+. +.+++||+||++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 58999998 9999999999999886 499999954 333211 11 11 2223354 458999999999
Q ss_pred eCC
Q 018303 134 LAD 136 (358)
Q Consensus 134 vp~ 136 (358)
...
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 953
No 286
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.27 E-value=0.00047 Score=53.05 Aligned_cols=83 Identities=12% Similarity=0.060 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHCCCcEEEEcCCccchhhHH---hCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCC
Q 018303 80 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI---SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGP 156 (358)
Q Consensus 80 ~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~ 156 (358)
+-+..+++.|.+.|.+|.+||+.-....... ..++...+++++.++.+|.||++++.+ +...+- -+++...|++
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~--~~~~~~~~~~ 93 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELD--WEEIAKLMRK 93 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCG--HHHHHHHSCS
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccC--HHHHHHhcCC
Confidence 3467899999999999999999766544333 135777789999999999999999644 444432 1556667788
Q ss_pred CCEEEEccC
Q 018303 157 GKGYVDVST 165 (358)
Q Consensus 157 ~~~vi~~s~ 165 (358)
+.+|+|+-+
T Consensus 94 ~~~iiD~~~ 102 (106)
T PF03720_consen 94 PPVIIDGRN 102 (106)
T ss_dssp SEEEEESSS
T ss_pred CCEEEECcc
Confidence 899999854
No 287
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.27 E-value=0.00085 Score=63.60 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=62.4
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHC-CCcEEEEcCCccchhhHHhCC-------CccCCCHH-HHhhcCCEEEEeeCChh
Q 018303 69 LPGRIGFLGM-GIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLG-------AKYQPSPD-EVAASCDVTFAMLADPE 138 (358)
Q Consensus 69 ~~~~IgIIG~-G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~-~~~~~aDivi~~vp~~~ 138 (358)
..++|+|+|+ |.+|+.+.+.|... +++|..+.++....+.+.+.. .....+.+ +.++++|+|++++| ..
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp-~~ 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLP-HG 115 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCC-HH
Confidence 4569999998 99999999999887 678887766543333222111 11112222 22478999999997 44
Q ss_pred hHhhhhcccccccccCCCCCEEEEccCCChhHH
Q 018303 139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 171 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~ 171 (358)
...+++ + .+..|..|||.|...-.+.
T Consensus 116 ~s~~i~---~----~~~~g~~VIDlSs~fRl~~ 141 (381)
T PLN02968 116 TTQEII---K----ALPKDLKIVDLSADFRLRD 141 (381)
T ss_pred HHHHHH---H----HHhCCCEEEEcCchhccCC
Confidence 555555 3 3456899999987654443
No 288
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.26 E-value=0.0014 Score=60.28 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=47.3
Q ss_pred EEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhhHHhC--------C---CccCCCHHHHhhcCCEEEEeeCC
Q 018303 73 IGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISL--------G---AKYQPSPDEVAASCDVTFAMLAD 136 (358)
Q Consensus 73 IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~--------g---~~~~~~~~~~~~~aDivi~~vp~ 136 (358)
|+|||+|.+|..+|..++..| .++.++|++.++++..... . +....+ .+.+++||+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCC
Confidence 689999999999999999888 5799999988765543321 0 111233 4578899999999964
No 289
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.26 E-value=0.0013 Score=60.88 Aligned_cols=76 Identities=22% Similarity=0.407 Sum_probs=61.5
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||-+ -+|+.++..|...|..|+++.... .++.+..++|||||.+++.+.. +
T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGkp~~----i- 288 (364)
T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQPNM----V- 288 (364)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----C-
Confidence 6789999999985 569999999999999999986432 3677889999999999986543 3
Q ss_pred ccccccccCCCCCEEEEccC
Q 018303 146 GKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~ 165 (358)
. .+.+++|+++||++-
T Consensus 289 -~---~d~vK~GAvVIDVGI 304 (364)
T PLN02616 289 -R---GSWIKPGAVVIDVGI 304 (364)
T ss_pred -C---HHHcCCCCEEEeccc
Confidence 1 234789999999964
No 290
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.26 E-value=0.001 Score=62.27 Aligned_cols=114 Identities=19% Similarity=0.158 Sum_probs=67.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHC----------CCcEE-EEcCCcc----------chhhHHh-CCC-c------cCCCHH
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKA----------GCDVT-VWNRTKS----------KCDPLIS-LGA-K------YQPSPD 121 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~----------g~~V~-~~~~~~~----------~~~~~~~-~g~-~------~~~~~~ 121 (358)
.+|+|+|+|.||+.+++.+.+. +.+|. ++|++.. ....+.+ .+. . ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 4899999999999999999764 34544 4675321 1111111 121 1 124788
Q ss_pred HHhh--cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCC-hhHHHHHHHHHHhcCCeEe
Q 018303 122 EVAA--SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD-GDTSKLINGHIKATGASFL 186 (358)
Q Consensus 122 ~~~~--~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~-~~~~~~l~~~l~~~~~~~~ 186 (358)
+++. +.|+|+.|+|...+..... .+-....+..|..||...... ....+++.+..++++..+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a--~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~ 148 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPA--LSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFR 148 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchH--HHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEE
Confidence 8874 5899999998644422111 012235677888888543222 1234577777777776553
No 291
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.25 E-value=0.0016 Score=58.62 Aligned_cols=77 Identities=25% Similarity=0.301 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
+..++++.|||-+ .+|+.++..|...|..|+++... +.++.+..++||+||.+++.+. ++
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~----~i- 214 (282)
T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAE----LV- 214 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcC----cc-
Confidence 5788999999985 57999999999999999998653 2367788899999999997543 33
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
. .+++++|+++||++..
T Consensus 215 -~---~~~ik~gaiVIDvGin 231 (282)
T PRK14182 215 -K---GAWVKEGAVVIDVGMN 231 (282)
T ss_pred -C---HHHcCCCCEEEEeece
Confidence 1 2357899999999643
No 292
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=97.24 E-value=0.0039 Score=49.81 Aligned_cols=127 Identities=13% Similarity=0.131 Sum_probs=75.7
Q ss_pred EEecCCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018303 204 FLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP 283 (358)
Q Consensus 204 ~~~~g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~ 283 (358)
+.+.|+++..+.++.+++.+|.+++.+.+.. -..++.+.-+..++...++..+..++++.|++.++..+++. |
T Consensus 4 ~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~-r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~------P 76 (132)
T PF10728_consen 4 FAIEGDEEALEVLQELAKELGGRPFEIDSEQ-RALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALL------P 76 (132)
T ss_dssp EEEEESHHHHHHHHHHHHHTTSEEEE--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHH------H
T ss_pred EEEecCHHHHHHHHHHHHHhCCceEEeCHHh-HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHH------H
Confidence 3444599999999999999999999886644 66666776666777777778888999999999966444443 2
Q ss_pred hhhccccccccCCCCCCCchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018303 284 MYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA 337 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a 337 (358)
+.+.....+.+.......+.+..+.|...+.+-.+.+.-.-|-...++..+.+.
T Consensus 77 Li~~t~~n~~~~g~~~alTGP~~RgD~~Tv~kHl~~L~~~~p~~~~lY~~ls~~ 130 (132)
T PF10728_consen 77 LIRETLENILQLGPADALTGPAARGDIGTVAKHLAALDDHDPELKELYRALSRA 130 (132)
T ss_dssp HHHHHHHHHHHS-HHHH--SCCHCTHHHHHHHHHHHCCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhccCCCcccCCHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 222212222221111122334556677777666666644335555555555443
No 293
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.22 E-value=0.0017 Score=58.63 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=61.0
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHC----CCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM 141 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~ 141 (358)
++.++++.|||-+ .+|+.++..|... +..|+++.... .++.+.+++||+||.+++.+.
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~p~--- 212 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGVPL--- 212 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC---
Confidence 5788999999985 5699999999987 78899876421 367888999999999998653
Q ss_pred hhhcccccccccCCCCCEEEEccCC
Q 018303 142 DVACGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
++ . .+++++|+++||++..
T Consensus 213 -~i--~---~~~ik~GavVIDvGin 231 (287)
T PRK14181 213 -FI--K---EEMIAEKAVIVDVGTS 231 (287)
T ss_pred -cc--C---HHHcCCCCEEEEeccc
Confidence 33 1 2357899999999743
No 294
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.22 E-value=0.0011 Score=58.82 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=68.2
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcCC-----cc-----chhhH---Hh-CC------------CccCCC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT-----KS-----KCDPL---IS-LG------------AKYQPS 119 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~~-----~~-----~~~~~---~~-~g------------~~~~~~ 119 (358)
++.++||.|.|+|++|+..|+.|.+.|.+|+ +.|.+ ++ .+..+ .+ .+ .... +
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~ 113 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-E 113 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-C
Confidence 5678899999999999999999999999988 55522 11 11111 11 11 2222 3
Q ss_pred HHHH-hhcCCEEEEeeCChhhHhhhhcccccccccCC--CCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 120 PDEV-AASCDVTFAMLADPESAMDVACGKHGAASGMG--PGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 120 ~~~~-~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~--~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
.+++ ..+|||++-|- +.+.+ +.+..+.++ .=++|+..++++. +. +-.+.|.++|+.++.
T Consensus 114 ~~~~~~~~~DIliPcA-----l~~~I--~~~na~~i~~~~ak~I~EgAN~p~-t~-~a~~~L~~rGI~vvP 175 (254)
T cd05313 114 GKKPWEVPCDIAFPCA-----TQNEV--DAEDAKLLVKNGCKYVAEGANMPC-TA-EAIEVFRQAGVLFAP 175 (254)
T ss_pred CcchhcCCCcEEEecc-----ccccC--CHHHHHHHHHcCCEEEEeCCCCCC-CH-HHHHHHHHCCcEEEC
Confidence 3343 34699988775 44444 333334442 2345665556554 44 567788899988874
No 295
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.22 E-value=0.0015 Score=60.17 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhc
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~ 145 (358)
++.++++.|||-+ .+|+.++..|...|..|+++.... .++.+..++|||||.+++.+.- +
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGkp~~----v- 271 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGIPNL----V- 271 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCCcCc----c-
Confidence 6789999999985 469999999999999999886432 3577889999999999986543 3
Q ss_pred ccccccccCCCCCEEEEccCC
Q 018303 146 GKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 146 ~~~~~~~~l~~~~~vi~~s~~ 166 (358)
. .+++++|+++||++..
T Consensus 272 -~---~d~vk~GavVIDVGin 288 (345)
T PLN02897 272 -R---GSWLKPGAVVIDVGTT 288 (345)
T ss_pred -C---HHHcCCCCEEEEcccc
Confidence 1 2357899999999753
No 296
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.21 E-value=0.0029 Score=62.38 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=51.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCC--CHHHHhhcCCEEEEeeC
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP--SPDEVAASCDVTFAMLA 135 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~aDivi~~vp 135 (358)
.+++|.|+|+|..|.+.++.|...|.+|+++|+++...+.+.+.|+.... ...+.++++|+||.+-.
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpG 79 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPG 79 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCC
Confidence 45789999999999999999999999999999876555545555664432 23455678998888763
No 297
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=97.20 E-value=0.0021 Score=58.17 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=72.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC-CCccCCCHHHH-hhcCCEEEEeeCChhhH--h--h
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEV-AASCDVTFAMLADPESA--M--D 142 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~aDivi~~vp~~~~~--~--~ 142 (358)
++++.|+|+|..+++++..|...|. +|.+++|++++.+.+.+. +.... +++ ...+|+||.|+|....- . .
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~---~~~~~~~~dlvINaTp~Gm~~~~~~~~ 198 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR---PDLGGIEADILVNVTPIGMAGGPEADK 198 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch---hhcccccCCEEEECCccccCCCCcccc
Confidence 3589999999999999999999997 599999999888777653 21111 111 24589999999854321 0 0
Q ss_pred -hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 143 -VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 143 -~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
-+ + ...++++.+++|+.-.+..+ .+.+..++.|...++
T Consensus 199 ~pi--~---~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 199 LAF--P---EAEIDAASVVFDVVALPAET--PLIRYARARGKTVIT 237 (272)
T ss_pred CCC--C---HHHcCCCCEEEEeecCCccC--HHHHHHHHCcCeEeC
Confidence 11 1 23467788999986654432 466666666655543
No 298
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.20 E-value=0.00089 Score=50.46 Aligned_cols=72 Identities=24% Similarity=0.287 Sum_probs=52.7
Q ss_pred CeEEEEcCChhHHHHHHHH-HHCCCcE-EEEcCCccchhhHHhCCCccCCCHHHHhhc--CCEEEEeeCChhhHhhhh
Q 018303 71 GRIGFLGMGIMGTPMAQNL-LKAGCDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVA 144 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l-~~~g~~V-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~~ 144 (358)
.++.|+|+|+.|++++... ...|+.+ .++|.++++..... .|+..+.+.+++.+. .|+-++++| +...+.++
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP-~~~a~~~~ 79 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVP-AEAAQEVA 79 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES--HHHHHHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcC-HHHHHHHH
Confidence 3799999999999998554 4467664 56888887654221 256667788888877 999999998 56666666
No 299
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.20 E-value=0.00069 Score=63.28 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=33.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 103 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~ 103 (358)
.+..++|.|||+|.+|+.+|..|+..|+ ++.++|++.
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4566799999999999999999999997 788899875
No 300
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.18 E-value=0.0021 Score=65.11 Aligned_cols=88 Identities=22% Similarity=0.354 Sum_probs=63.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc----CCCHHHH----hhcCCEEEEeeCChhhHh
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY----QPSPDEV----AASCDVTFAMLADPESAM 141 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~----~~~~~~~----~~~aDivi~~vp~~~~~~ 141 (358)
..+|-|+|+|++|+.+++.|.+.|.++++.|.++++++.+++.|... .++.+-+ ++++|.++++++++....
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 35899999999999999999999999999999999998887766432 1222211 347999999997665555
Q ss_pred hhhcccccccccCCCCCEEE
Q 018303 142 DVACGKHGAASGMGPGKGYV 161 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi 161 (358)
.++ . ....+.|+..++
T Consensus 480 ~i~---~-~ar~~~p~~~ii 495 (621)
T PRK03562 480 QLV---E-LVKEHFPHLQII 495 (621)
T ss_pred HHH---H-HHHHhCCCCeEE
Confidence 554 2 233344554455
No 301
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=97.17 E-value=0.0054 Score=55.84 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=77.3
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccCCCHHHHhhc--CCEEEEeeCChhhHhhhhcc
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~~~~ 146 (358)
.+|.|.|. |++|..+.+.|.++|++ .+|-.+|.. .+.+ .|+..+.++.|+-+. .|+.++++| ...+.+++
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp-~~~v~~~l-- 82 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVP-PPFAADAI-- 82 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcC-HHHHHHHH--
Confidence 37999998 88999999999999987 444333331 1111 367788899999887 899999997 67777777
Q ss_pred cccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhcCCeEecCCC
Q 018303 147 KHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPV 190 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~ 190 (358)
++..+. .-...+|- +.+ ...+++++.+..++.++.+++...
T Consensus 83 -~e~~~~-gvk~avI~-s~Gf~~~~~~~l~~~a~~~girvlGPNc 124 (291)
T PRK05678 83 -LEAIDA-GIDLIVCI-TEGIPVLDMLEVKAYLERKKTRLIGPNC 124 (291)
T ss_pred -HHHHHC-CCCEEEEE-CCCCCHHHHHHHHHHHHHcCCEEECCCC
Confidence 555542 22233333 444 344445888888888888887443
No 302
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=97.15 E-value=0.0025 Score=63.29 Aligned_cols=113 Identities=13% Similarity=0.055 Sum_probs=72.7
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CC--ccCCCHHHHh-hcCCEEEEeeCChhhH--
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GA--KYQPSPDEVA-ASCDVTFAMLADPESA-- 140 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~--~~~~~~~~~~-~~aDivi~~vp~~~~~-- 140 (358)
+..++++.|+|+|.+|++++..|+..|++|.+++|+.++.+.+.+. +. ....+..+.. ..+|+|+.++|....-
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~ 455 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNV 455 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCC
Confidence 3566899999999999999999999999999999998877766542 21 1112222222 3578888888754321
Q ss_pred hh-hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303 141 MD-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 186 (358)
Q Consensus 141 ~~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~ 186 (358)
.. -+ + ...+++..+++|+.-.+..+ .+.+..++.|...+
T Consensus 456 ~~~pl--~---~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~ 495 (529)
T PLN02520 456 DETPI--S---KHALKHYSLVFDAVYTPKIT--RLLREAEESGAIIV 495 (529)
T ss_pred CCCcc--c---HhhCCCCCEEEEeccCCCcC--HHHHHHHHCCCeEe
Confidence 11 11 1 13466788899886654432 35555555555444
No 303
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.12 E-value=0.00059 Score=52.17 Aligned_cols=73 Identities=22% Similarity=0.163 Sum_probs=47.6
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-CCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QPSPDEVAASCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~aDivi~~vp~~~~~~~~~ 144 (358)
++++++|.|||.|.+|..=++.|.+.|.+|+++++.. ... +..+.. ....++.++.+|+|+.+++ ++.+...+
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~-~~~i~~~~~~~~~~l~~~~lV~~at~-d~~~n~~i 77 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFS-EGLIQLIRREFEEDLDGADLVFAATD-DPELNEAI 77 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHH-HTSCEEEESS-GGGCTTESEEEE-SS--HHHHHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhh-hhHHHHHhhhHHHHHhhheEEEecCC-CHHHHHHH
Confidence 5778899999999999999999999999999999875 111 111111 1122345677888888885 44444444
No 304
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=97.11 E-value=0.0063 Score=55.27 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=78.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccCCCHHHHhhc--CCEEEEeeCChhhHhhhhcc
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~~~~ 146 (358)
.+|.|.|. |.+|..+-+.+...|++ .++..+|.+ .+. -.|+..+.++.|+.+. .|+.++++| ...+.+++
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vp-a~~v~~~l-- 80 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVP-APFAADAI-- 80 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecC-HHHHHHHH--
Confidence 47999997 99999999999999988 555665552 111 1377888899998876 799999997 67778787
Q ss_pred cccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhcCCeEecCC
Q 018303 147 KHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAP 189 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~ 189 (358)
++..+. .-...+|- +.+ ...+++++.+..++.++.+++..
T Consensus 81 -~e~~~~-Gvk~avIi-s~Gf~e~~~~~l~~~a~~~girilGPN 121 (286)
T TIGR01019 81 -FEAIDA-GIELIVCI-TEGIPVHDMLKVKRYMEESGTRLIGPN 121 (286)
T ss_pred -HHHHHC-CCCEEEEE-CCCCCHHHHHHHHHHHHHcCCEEECCC
Confidence 555442 22233332 444 33446788888888888888643
No 305
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.11 E-value=0.003 Score=60.76 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=70.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEE-cC----------CccchhhHHhC------------CCccCCCHHHH
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW-NR----------TKSKCDPLISL------------GAKYQPSPDEV 123 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~-~~----------~~~~~~~~~~~------------g~~~~~~~~~~ 123 (358)
++.++||.|.|+|++|+.+|+.|.+.|.+|+++ |. +.+.+....+. +.... +.+++
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~i 307 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGSP 307 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCccc
Confidence 577899999999999999999999999998876 62 32222111111 11111 33344
Q ss_pred hh-cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 124 AA-SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 124 ~~-~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
+. +|||++-|.....-+.+-. ..+.+ ..-++|+..++++. + .+-.+.|.++|+.++.
T Consensus 308 ~~~d~DVliPaAl~n~It~~~a---~~i~~--~~akiIvEgAN~p~-t-~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 308 WSVPCDIALPCATQNELDEEDA---KTLIA--NGVKAVAEGANMPS-T-PEAIEVFLEAGVLFAP 365 (445)
T ss_pred cccCCcEEEecCCcCcCCHHHH---HHHHH--cCCeEEEcCCCCCC-C-HHHHHHHHHCCcEEEC
Confidence 33 6999999986444444433 22211 02245665566655 3 3466788888988763
No 306
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=97.11 E-value=0.0021 Score=57.14 Aligned_cols=111 Identities=19% Similarity=0.252 Sum_probs=67.2
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEE--------cCCccchhhHHh----CCC--ccCC----------CHH-
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW--------NRTKSKCDPLIS----LGA--KYQP----------SPD- 121 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~--------~~~~~~~~~~~~----~g~--~~~~----------~~~- 121 (358)
.++++++.|-|+|++|...|+.|.+.|.+|.+. |++.-..+.+.+ .+. .... +.+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 477889999999999999999999999887654 444333333322 122 1111 221
Q ss_pred HHh-hcCCEEEEeeCChhhHhhhhcccccccc-cCCCCC-EEEEccCCChhHHHHHHHHHHhcCCeEe
Q 018303 122 EVA-ASCDVTFAMLADPESAMDVACGKHGAAS-GMGPGK-GYVDVSTVDGDTSKLINGHIKATGASFL 186 (358)
Q Consensus 122 ~~~-~~aDivi~~vp~~~~~~~~~~~~~~~~~-~l~~~~-~vi~~s~~~~~~~~~l~~~l~~~~~~~~ 186 (358)
+++ .+|||++-|-- .+.+ +++... .+++++ +|+.-++. |...++.. .|.++|+.++
T Consensus 109 ~il~~~~DiliP~A~-----~~~I--~~~~~~~~i~~~akiIvegAN~-p~t~~a~~-~L~~rGI~vi 167 (244)
T PF00208_consen 109 EILSVDCDILIPCAL-----GNVI--NEDNAPSLIKSGAKIIVEGANG-PLTPEADE-ILRERGILVI 167 (244)
T ss_dssp HGGTSSSSEEEEESS-----STSB--SCHHHCHCHHTT-SEEEESSSS-SBSHHHHH-HHHHTT-EEE
T ss_pred ccccccccEEEEcCC-----CCee--CHHHHHHHHhccCcEEEeCcch-hccHHHHH-HHHHCCCEEE
Confidence 454 47999999863 2333 233334 455555 44444454 44454554 8888887765
No 307
>PRK05086 malate dehydrogenase; Provisional
Probab=97.10 E-value=0.005 Score=56.96 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=45.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHH---CCCcEEEEcCCccch---hhHHhCC--Ccc----CCCHHHHhhcCCEEEEeeCC
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLK---AGCDVTVWNRTKSKC---DPLISLG--AKY----QPSPDEVAASCDVTFAMLAD 136 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~---~g~~V~~~~~~~~~~---~~~~~~g--~~~----~~~~~~~~~~aDivi~~vp~ 136 (358)
|||+|||+ |.+|+.++..+.. .++++.++|+++... -.+.+.+ ... .+++.+.++++|+||++.-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 58999999 9999999988854 346888999875431 1122211 111 24556778899999999853
No 308
>PLN02477 glutamate dehydrogenase
Probab=97.10 E-value=0.0029 Score=60.35 Aligned_cols=110 Identities=18% Similarity=0.217 Sum_probs=69.7
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcCC----------ccchhhHHhC--------CCccCCCHHHH-hhc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLISL--------GAKYQPSPDEV-AAS 126 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~~~--------g~~~~~~~~~~-~~~ 126 (358)
++.+++|.|.|+|++|+.+|+.|.+.|.+|+ +.|.+ .+.+....+. +.... +.+++ ..+
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~ 281 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEP 281 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceecc
Confidence 5778999999999999999999999999988 56665 2222111111 11112 22333 347
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
|||++-|. +.+.+ +++..+.+ +-++|+.-++++. +. +..+.|.++|+.++.
T Consensus 282 ~DvliP~A-----l~~~I--~~~na~~i-~ak~I~egAN~p~-t~-ea~~~L~~rGI~~~P 332 (410)
T PLN02477 282 CDVLIPAA-----LGGVI--NKENAADV-KAKFIVEAANHPT-DP-EADEILRKKGVVVLP 332 (410)
T ss_pred ccEEeecc-----ccccC--CHhHHHHc-CCcEEEeCCCCCC-CH-HHHHHHHHCCcEEEC
Confidence 99988776 23344 33333333 3456666666665 33 466888899988874
No 309
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.10 E-value=0.0025 Score=57.70 Aligned_cols=77 Identities=30% Similarity=0.431 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHC----CCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM 141 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~ 141 (358)
++.++++.|||-+ .+|+.++..|... +..|+++.... .++.+..++||+||.+++.+..
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGkp~~-- 217 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQPEF-- 217 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCCcCc--
Confidence 5788999999985 5699999999887 57888886432 3677889999999999986543
Q ss_pred hhhcccccccccCCCCCEEEEccCC
Q 018303 142 DVACGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
+ . .+++++|+++||++..
T Consensus 218 --i--~---~~~vk~gavVIDvGin 235 (293)
T PRK14185 218 --V--K---ADMVKEGAVVIDVGTT 235 (293)
T ss_pred --c--C---HHHcCCCCEEEEecCc
Confidence 3 1 2357899999999753
No 310
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.09 E-value=0.0015 Score=60.61 Aligned_cols=113 Identities=14% Similarity=0.076 Sum_probs=65.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHC------C--CcEE-EEcCCccch-------hhH---HhCC-C--ccCC--CHHHHh-h
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKA------G--CDVT-VWNRTKSKC-------DPL---ISLG-A--KYQP--SPDEVA-A 125 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~------g--~~V~-~~~~~~~~~-------~~~---~~~g-~--~~~~--~~~~~~-~ 125 (358)
|+|+|||+|++|+.+++.|.+. | .+|. ++|++.... +.+ .+.+ + .... ++++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 4899999999999999999762 3 4433 456553211 111 1111 1 1112 455553 4
Q ss_pred cCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChh-HHHHHHHHHHhcCCeEe
Q 018303 126 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-TSKLINGHIKATGASFL 186 (358)
Q Consensus 126 ~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~-~~~~l~~~l~~~~~~~~ 186 (358)
++|+||-|+|....-.... .-+.+.++.|..||-.+-+... ...++.+..++++..+.
T Consensus 81 ~~DVvVE~t~~~~~g~~~~---~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~ 139 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREK---NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIR 139 (326)
T ss_pred CCCEEEECCCCCCcCchHH---HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEE
Confidence 6899999997432111122 2234567889988866544332 34566666666666543
No 311
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.06 E-value=0.0028 Score=57.56 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=60.5
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHC----CCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM 141 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~ 141 (358)
++.+++|.|||- ..+|+.++..|... +..|+++... +.++.+..++||+||.++..+.-
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------------T~~l~~~~~~ADIvVsAvGkp~~-- 221 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------------SKNLARHCQRADILIVAAGVPNL-- 221 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------------CcCHHHHHhhCCEEEEecCCcCc--
Confidence 678899999998 56799999999987 6789887543 13677889999999999976542
Q ss_pred hhhcccccccccCCCCCEEEEccCC
Q 018303 142 DVACGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
+ . .+++++|+++||++..
T Consensus 222 --i--~---~~~ik~gavVIDvGin 239 (297)
T PRK14168 222 --V--K---PEWIKPGATVIDVGVN 239 (297)
T ss_pred --c--C---HHHcCCCCEEEecCCC
Confidence 3 1 2357899999999743
No 312
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.0013 Score=60.58 Aligned_cols=65 Identities=26% Similarity=0.317 Sum_probs=48.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhH-HhCCCc-cCC---CHHHHhhcCCEE---EEeeC
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAK-YQP---SPDEVAASCDVT---FAMLA 135 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~-~~~---~~~~~~~~aDiv---i~~vp 135 (358)
++|||||-|..|+.++......|++|++.|++++....- .+.-+. .++ .+.++++.||+| +.++|
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~ 74 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVP 74 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCC
Confidence 689999999999999999999999999999887653322 221111 122 466888899999 45665
No 313
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.04 E-value=0.00087 Score=56.65 Aligned_cols=62 Identities=27% Similarity=0.393 Sum_probs=48.4
Q ss_pred EEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-------cCCCHHHHhhcCCEEEEeeCC
Q 018303 73 IGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLAD 136 (358)
Q Consensus 73 IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivi~~vp~ 136 (358)
|.|+|+ |.+|+.+++.|.+.|++|++..|++++.+. ..++. -.+++.++++++|+|+.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 678986 999999999999999999999999887664 22221 112345678899999999964
No 314
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.04 E-value=0.025 Score=48.98 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=48.3
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc-chhhHHhCC-Ccc---CCCHHHHhhcCCEEEEeeCC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCDPLISLG-AKY---QPSPDEVAASCDVTFAMLAD 136 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~-~~~~~~~~g-~~~---~~~~~~~~~~aDivi~~vp~ 136 (358)
++++++|.|||.|.+|..-++.|.+.|.+|++++++.. ....+.+.+ +.+ ... .+.+..+|+|+.++..
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~d 79 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATDD 79 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCCC
Confidence 57788999999999999999999999999999988654 222333322 221 112 2345677777777743
No 315
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.03 E-value=0.0028 Score=59.26 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=66.5
Q ss_pred CeEEEEcCChhHHHHHHHHHH--------CCC--cEE-EEcCCccc-----h--hhHHh---C-C-C-cc-------CCC
Q 018303 71 GRIGFLGMGIMGTPMAQNLLK--------AGC--DVT-VWNRTKSK-----C--DPLIS---L-G-A-KY-------QPS 119 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~--------~g~--~V~-~~~~~~~~-----~--~~~~~---~-g-~-~~-------~~~ 119 (358)
.+|+|+|+|++|+.+++.+.+ .|. +|. +.|++... . +.+.+ . + . .+ ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 589999999999999999876 564 333 34543211 1 11111 1 1 0 00 126
Q ss_pred HHHHh--hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCCh-hHHHHHHHHHHhcCCeEec
Q 018303 120 PDEVA--ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFLE 187 (358)
Q Consensus 120 ~~~~~--~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~~~~ 187 (358)
.++++ .++|+||-+++ +......+ ...+..|..+|-.+.+.. ...+++.+..+.++..+.-
T Consensus 83 ~~ell~~~~~DVvVd~t~-~~~a~~~~------~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ 146 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTN-DKNAHEWH------LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLF 146 (336)
T ss_pred HHHHHhcCCCCEEEECCC-cHHHHHHH------HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEE
Confidence 77877 47999999995 44555554 345678888885554322 3455677776667766553
No 316
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.02 E-value=0.0023 Score=53.87 Aligned_cols=32 Identities=22% Similarity=0.463 Sum_probs=29.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 103 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~ 103 (358)
+|+|||+|.+|+.++..|+..|. ++.++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999998 499998875
No 317
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.00 E-value=0.0044 Score=56.89 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=77.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhH---hhhhc-
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA---MDVAC- 145 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~---~~~~~- 145 (358)
+++++|||--.=-..+++.|.+.|++|.++.-+.+. ....|+...++.+++++++|+|+..+|.+..- +..+.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 458999999999999999999999999987643221 12236777778889999999999998853221 11110
Q ss_pred ----ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303 146 ----GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 188 (358)
Q Consensus 146 ----~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~ 188 (358)
-+.+.++.|+++.+++ .+...+. +.+.+.++++.+++.
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~~~~ 120 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKLVEL 120 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeEEEE
Confidence 0245678899998555 3555554 334566788877754
No 318
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.99 E-value=0.0019 Score=60.42 Aligned_cols=89 Identities=18% Similarity=0.161 Sum_probs=56.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCcE---EEEcCCccchhhHHhCC--CccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGCDV---TVWNRTKSKCDPLISLG--AKYQPSPDEVAASCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V---~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~ 144 (358)
++|+|+|+ |..|+.+.+.|.+.+|++ ....+..+..+.+.-.+ +...+...+.++++|+||+|+| ....+...
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g-~g~s~~~~ 80 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAG-GSVSKKYA 80 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCC-hHHHHHHH
Confidence 58999987 999999999999987753 55544333222221111 2221111133478999999997 44555555
Q ss_pred cccccccccCCCCCEEEEccCC
Q 018303 145 CGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
+.+ ++.|..|||.|..
T Consensus 81 ---~~~---~~~G~~VIDlS~~ 96 (334)
T PRK14874 81 ---PKA---AAAGAVVIDNSSA 96 (334)
T ss_pred ---HHH---HhCCCEEEECCch
Confidence 333 3568899999864
No 319
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.96 E-value=0.0028 Score=58.79 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=46.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCCccc--hhh----HHhC------CCccCCCHHHHhhcCCEE
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LISL------GAKYQPSPDEVAASCDVT 130 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~~----~~~~------g~~~~~~~~~~~~~aDiv 130 (358)
+||+|||+ |++|..+|..+...|. ++.++|++... ++. +.+. .+....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 58999999 9999999999987664 68899985432 221 1111 122334555778999999
Q ss_pred EEeeCC
Q 018303 131 FAMLAD 136 (358)
Q Consensus 131 i~~vp~ 136 (358)
|++.-.
T Consensus 83 vitaG~ 88 (322)
T cd01338 83 LLVGAK 88 (322)
T ss_pred EEeCCC
Confidence 998743
No 320
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.96 E-value=0.0046 Score=57.37 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=46.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCCc--cchhhHH----hC------CCccCCCHHHHhhcCCEE
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTK--SKCDPLI----SL------GAKYQPSPDEVAASCDVT 130 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~--~~~~~~~----~~------g~~~~~~~~~~~~~aDiv 130 (358)
.||+|||+ |.+|..+|..+...|. ++.++|+++ ++++... +. +.....+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999999987774 789999864 2222111 11 122223555778999999
Q ss_pred EEeeCC
Q 018303 131 FAMLAD 136 (358)
Q Consensus 131 i~~vp~ 136 (358)
|++.-.
T Consensus 84 VitAG~ 89 (323)
T TIGR01759 84 LLVGAF 89 (323)
T ss_pred EEeCCC
Confidence 998743
No 321
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.96 E-value=0.0039 Score=56.65 Aligned_cols=77 Identities=25% Similarity=0.343 Sum_probs=60.3
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHHC----CCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM 141 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~~----g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~ 141 (358)
++.++++.|||-+ .+|+.++..|... +..|+++.... .++.+..++||+||.++..+.
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGkp~--- 216 (297)
T PRK14167 154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGVPE--- 216 (297)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC---
Confidence 5788999999985 5799999999876 78899875422 367788999999999997654
Q ss_pred hhhcccccccccCCCCCEEEEccCC
Q 018303 142 DVACGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
++ . .+++++|+++||++-.
T Consensus 217 -~i--~---~~~ik~gaiVIDvGin 235 (297)
T PRK14167 217 -LI--D---GSMLSEGATVIDVGIN 235 (297)
T ss_pred -cc--C---HHHcCCCCEEEEcccc
Confidence 33 1 1357899999999743
No 322
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.96 E-value=0.01 Score=57.78 Aligned_cols=115 Identities=21% Similarity=0.132 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch----hhHHhCCCccC--CCHHHHhhc-CCEEEEee--CCh-
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKYQ--PSPDEVAAS-CDVTFAML--ADP- 137 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~g~~~~--~~~~~~~~~-aDivi~~v--p~~- 137 (358)
+.+++|.|+|.|.+|.+.|+.|++.|++|.++|++.... +.+.+.|+... .+..+++.. +|+||... |.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~ 82 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN 82 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence 456789999999999999999999999999999865321 33444455432 234455554 89887765 222
Q ss_pred hhHhhhh------cccccccccCCCCC-EEEEccCCChhHHHHHHHHHHhcC
Q 018303 138 ESAMDVA------CGKHGAASGMGPGK-GYVDVSTVDGDTSKLINGHIKATG 182 (358)
Q Consensus 138 ~~~~~~~------~~~~~~~~~l~~~~-~vi~~s~~~~~~~~~l~~~l~~~~ 182 (358)
+...... .+..++...+.+.. +-|--+.|...+..-+...|...+
T Consensus 83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g 134 (447)
T PRK02472 83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG 134 (447)
T ss_pred HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence 2221111 11122322332333 333335666777777777777654
No 323
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=96.93 E-value=0.0045 Score=55.86 Aligned_cols=96 Identities=20% Similarity=0.197 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hccccchhhhccccccccCCCCCCCchhh------
Q 018303 236 GAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVS---QGAISAPMYSLKGPSMIESLYPTAFPLKH------ 305 (358)
Q Consensus 236 ~~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~------ 305 (358)
++.+||+.|.+.++++++++|+..+++. .|.+.+++.+++. .+...|++++.....+.+.+...+.-++.
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~ 80 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAG 80 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S---
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccC
Confidence 5789999999999999999999999985 7888887776666 45566777775444443333211111111
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHH
Q 018303 306 QQKDLRLALGLAESVSQSTPIAAAAN 331 (358)
Q Consensus 306 ~~kd~~~~~~~a~~~gi~~p~~~a~~ 331 (358)
-...-.+.++.|-++|+|+|++.++.
T Consensus 81 ~kGtG~Wt~~~a~~~gvp~p~I~~a~ 106 (291)
T PF00393_consen 81 QKGTGKWTVQEALELGVPAPTIAAAV 106 (291)
T ss_dssp -BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred CCCccchHHHHHHHhCCCccHHHHHH
Confidence 12234778889999999999987664
No 324
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.93 E-value=0.0026 Score=59.54 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=55.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHCCCc---EEEE--cCCccchhhHHhCCCccC-CCHHHHhhcCCEEEEeeCChhhHh
Q 018303 69 LPGRIGFLGM-GIMGTPMAQNLLKAGCD---VTVW--NRTKSKCDPLISLGAKYQ-PSPDEVAASCDVTFAMLADPESAM 141 (358)
Q Consensus 69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~---V~~~--~~~~~~~~~~~~~g~~~~-~~~~~~~~~aDivi~~vp~~~~~~ 141 (358)
..++|+|+|+ |..|..+.+.|...+|+ +... .|+..+.-.......... .+. +.++++|+||+|+|. ....
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~-~~~~~~D~vf~a~p~-~~s~ 83 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTE-DSFDGVDIALFSAGG-SISK 83 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCH-HHHcCCCEEEECCCc-HHHH
Confidence 3468999987 99999999999987763 3222 233222111111111111 122 445789999999984 4555
Q ss_pred hhhcccccccccCCCCCEEEEccCC
Q 018303 142 DVACGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
.+. +++ .+.|..|||.|..
T Consensus 84 ~~~---~~~---~~~g~~VIDlS~~ 102 (344)
T PLN02383 84 KFG---PIA---VDKGAVVVDNSSA 102 (344)
T ss_pred HHH---HHH---HhCCCEEEECCch
Confidence 555 322 3478999999854
No 325
>PLN00106 malate dehydrogenase
Probab=96.93 E-value=0.0071 Score=56.05 Aligned_cols=69 Identities=9% Similarity=0.143 Sum_probs=48.1
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCCC--cEEEEcCCccchh--hHHhC----CCc---cCCCHHHHhhcCCEEEEeeC
Q 018303 68 ELPGRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLISL----GAK---YQPSPDEVAASCDVTFAMLA 135 (358)
Q Consensus 68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~----g~~---~~~~~~~~~~~aDivi~~vp 135 (358)
....||+|||+ |++|..+|..|...+. ++.++|+++...+ .+.+. .+. ..++..+.++++|+||++.-
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 34469999999 9999999999986654 7999998762221 11111 111 13345688999999999874
Q ss_pred C
Q 018303 136 D 136 (358)
Q Consensus 136 ~ 136 (358)
.
T Consensus 96 ~ 96 (323)
T PLN00106 96 V 96 (323)
T ss_pred C
Confidence 3
No 326
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.17 Score=45.99 Aligned_cols=265 Identities=15% Similarity=0.198 Sum_probs=151.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC--------------------CC----ccCCCHHHHh
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL--------------------GA----KYQPSPDEVA 124 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~--------------------g~----~~~~~~~~~~ 124 (358)
..++.++|+|...-.+|.-+...| +.+-.++|-..+.+++.+. |- .+..++.++.
T Consensus 4 m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~~ 83 (431)
T COG4408 4 MLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQAV 83 (431)
T ss_pred ccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHhh
Confidence 357999999999999999998876 6788888855444443220 10 1245677888
Q ss_pred hcCCEEEEeeCChhhHhhhhccccccc-ccCCCCCEEEEccCC--ChhHHHHHHHHHHhcCCeEecCC-------CCCCC
Q 018303 125 ASCDVTFAMLADPESAMDVACGKHGAA-SGMGPGKGYVDVSTV--DGDTSKLINGHIKATGASFLEAP-------VSGSK 194 (358)
Q Consensus 125 ~~aDivi~~vp~~~~~~~~~~~~~~~~-~~l~~~~~vi~~s~~--~~~~~~~l~~~l~~~~~~~~~~~-------~~~~~ 194 (358)
.+-+.+|+||| ..+...++ +++- +.++.=+.+|-+|.. +-.-...+...+. ..+.+++.. .+..+
T Consensus 84 ~dwqtlilav~-aDaY~dvl---qqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~-~daeViS~SsY~~dTk~id~~ 158 (431)
T COG4408 84 GDWQTLILAVP-ADAYYDVL---QQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAG-RDAEVISLSSYYADTKYIDAE 158 (431)
T ss_pred chhheEEEEee-cHHHHHHH---hcCCHhHhccccEEEEecccccccHHHHHHHhhhC-CCceEEEeehhcccceeeccc
Confidence 88999999997 55666666 3332 234433444444433 3222223333322 334444321 11111
Q ss_pred CcCCC-----CceEEEec--CCHhHHHHHHHHHHHhcCCeEEeCCcChHHHHHHH-------------------------
Q 018303 195 KPAED-----GQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV------------------------- 242 (358)
Q Consensus 195 ~~~~~-----~~~~~~~~--g~~~~~~~v~~ll~~~g~~~~~~g~~g~~~~~k~~------------------------- 242 (358)
+.... ..-+.+.+ ++....+.+.++++..|-.+..+..+-.++-..+.
T Consensus 159 ~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p~ 238 (431)
T COG4408 159 QPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRPQ 238 (431)
T ss_pred CcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCCc
Confidence 11000 01112222 25666778899999888776665554333322211
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccc--hhhhcc-------cc------------
Q 018303 243 -----------VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA--PMYSLK-------GP------------ 290 (358)
Q Consensus 243 -----------~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s--~~~~~~-------~~------------ 290 (358)
...++.-+.....|.++++.+.|+++-.+.+.++...-.- .++.+. .+
T Consensus 239 yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dId~F~~~~~i~QeYlLfVRY 318 (431)
T COG4408 239 YVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDIDEFPQLPPIEQEYLLFVRY 318 (431)
T ss_pred eeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccchhhcccCChHHHHHHHHHHH
Confidence 0234445667888999999999999988888887542110 011100 00
Q ss_pred -ccccCCCCC----C-------------------------CchhhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018303 291 -SMIESLYPT----A-------------------------FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 340 (358)
Q Consensus 291 -~~~~~~~~~----~-------------------------~~~~~~~kd~~~~~~~a~~~gi~~p~~~a~~~~~~~a~~~ 340 (358)
.++-+-|++ | -..+- ..-++.+.-++..+++++|.++-....++.|..+
T Consensus 319 talLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~ED-y~kla~iq~la~~l~v~~Pt~dq~lt~ye~a~k~ 397 (431)
T COG4408 319 TALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLED-YYKLATIQLLAGALDVVMPTADQLLTRYEQALKA 397 (431)
T ss_pred HHHhcCCCCCccccCccccccccceeeeeecccccccCCCCcHHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 011111110 0 01111 2226888999999999999999998888888764
No 327
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.92 E-value=0.0065 Score=58.41 Aligned_cols=125 Identities=23% Similarity=0.214 Sum_probs=74.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch----hhHHhCCCccCC--CHHHHhhcCCEEEEeeCCh---hh
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKYQP--SPDEVAASCDVTFAMLADP---ES 139 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~g~~~~~--~~~~~~~~aDivi~~vp~~---~~ 139 (358)
.+|+|.|+|+|.-|.+.++.|.+.|++|+++|.++... ......++.+.. ...+...++|+||..=.-+ +.
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~ 85 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPL 85 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHH
Confidence 37899999999999999999999999999999766551 111223433221 1225567899999874222 21
Q ss_pred Hhhhh------cccccccccCC-CCCEEEEc-cCCChhHHHHHHHHHHhcCCeEecCCCCCC
Q 018303 140 AMDVA------CGKHGAASGMG-PGKGYVDV-STVDGDTSKLINGHIKATGASFLEAPVSGS 193 (358)
Q Consensus 140 ~~~~~------~~~~~~~~~l~-~~~~vi~~-s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 193 (358)
++... .++-+++.... +..+|--+ ++|+..++.-+...++..|....-+...|.
T Consensus 86 v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~ 147 (448)
T COG0771 86 VEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGT 147 (448)
T ss_pred HHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCc
Confidence 22111 01223333331 23333333 567777777777888877765544444333
No 328
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.91 E-value=0.0044 Score=56.34 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=60.1
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHH----CCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLK----AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM 141 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~----~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~ 141 (358)
++.++++.|||-+ .+|+.++..|.+ .+..|+.+..+. .++.+.+++||+||.+++.+
T Consensus 156 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~---- 217 (295)
T PRK14174 156 ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKA---- 217 (295)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCcc----
Confidence 5788999999985 569999999987 578888877542 25778899999999999754
Q ss_pred hhhcccccccccCCCCCEEEEccCC
Q 018303 142 DVACGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
+++ ..+ .+++|+++||++-.
T Consensus 218 ~li--~~~---~vk~GavVIDVgi~ 237 (295)
T PRK14174 218 RFI--TAD---MVKPGAVVIDVGIN 237 (295)
T ss_pred Ccc--CHH---HcCCCCEEEEeecc
Confidence 344 233 35999999999743
No 329
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.89 E-value=0.011 Score=58.03 Aligned_cols=68 Identities=25% Similarity=0.354 Sum_probs=50.1
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhH-HhCCCccCC--CHHHHhhcCCEEEEee
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQP--SPDEVAASCDVTFAML 134 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~aDivi~~v 134 (358)
.+.+++|.|+|+|..|.++++.|...|++|.++|++......+ .+.|+.... ...+.+.++|+||..-
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Sp 82 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSP 82 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCC
Confidence 4556789999999999999999999999999999875543332 334655432 2234467889888763
No 330
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.88 E-value=0.0022 Score=59.56 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=48.8
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018303 71 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA 135 (358)
Q Consensus 71 ~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~vp 135 (358)
|+|.|.| .|.+|+.+++.|.+.|++|.+.+|++++...+...++.. ..++.++++++|+|+.+++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899998 599999999999999999999999875544333333321 2245667889999988764
No 331
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.88 E-value=0.0044 Score=55.96 Aligned_cols=76 Identities=26% Similarity=0.358 Sum_probs=59.8
Q ss_pred CCCCCeEEEEcCC-hhHHHHHHHHHH----CCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHh
Q 018303 67 DELPGRIGFLGMG-IMGTPMAQNLLK----AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM 141 (358)
Q Consensus 67 ~~~~~~IgIIG~G-~iG~~~a~~l~~----~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~ 141 (358)
+..++++.|||-+ .+|+.++..|.. .+..|+.+..+. .++.+.+++||+||.+++.+.
T Consensus 154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~p~--- 216 (286)
T PRK14184 154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGRPR--- 216 (286)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCC---
Confidence 5788999999985 569999999998 678888887532 367888999999999996543
Q ss_pred hhhcccccccccCCCCCEEEEccC
Q 018303 142 DVACGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~ 165 (358)
++ .. +.+++|+++||++-
T Consensus 217 -li--~~---~~vk~GavVIDVGi 234 (286)
T PRK14184 217 -FV--TA---DMVKPGAVVVDVGI 234 (286)
T ss_pred -cC--CH---HHcCCCCEEEEeee
Confidence 33 22 34689999999964
No 332
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.86 E-value=0.0051 Score=60.25 Aligned_cols=116 Identities=22% Similarity=0.230 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCChhHHH-HHHHHHHCCCcEEEEcCCccc-hhhHHhCCCccC-CCHHHHhhcCCEEEEeeCCh---hhHh
Q 018303 68 ELPGRIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQ-PSPDEVAASCDVTFAMLADP---ESAM 141 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~-~a~~l~~~g~~V~~~~~~~~~-~~~~~~~g~~~~-~~~~~~~~~aDivi~~vp~~---~~~~ 141 (358)
..+++|.|||+|..|.+ +|+.|.+.|++|.++|.+... .+.+.+.|+... ....+.+.++|+||+.---+ +..+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 44578999999999999 899999999999999976432 233555566543 22234566899888764222 2222
Q ss_pred hhh------cccccccccC-CCCCEE-EEccCCChhHHHHHHHHHHhcCC
Q 018303 142 DVA------CGKHGAASGM-GPGKGY-VDVSTVDGDTSKLINGHIKATGA 183 (358)
Q Consensus 142 ~~~------~~~~~~~~~l-~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~ 183 (358)
... .+..+++..+ ++..+| |--+.|...+..-+...|+..|.
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 211 1223343333 222333 33356777777777788877663
No 333
>PRK05442 malate dehydrogenase; Provisional
Probab=96.83 E-value=0.0047 Score=57.34 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=45.4
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCCccc--hhh----HHhC------CCccCCCHHHHhhcCCEE
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LISL------GAKYQPSPDEVAASCDVT 130 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~~----~~~~------g~~~~~~~~~~~~~aDiv 130 (358)
+||+|||+ |.+|..+|..+...|. ++.++|+++.. ++. +.+. ......+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 58999998 9999999999876553 68899985432 211 1111 123334555778999999
Q ss_pred EEeeC
Q 018303 131 FAMLA 135 (358)
Q Consensus 131 i~~vp 135 (358)
|++.-
T Consensus 85 VitaG 89 (326)
T PRK05442 85 LLVGA 89 (326)
T ss_pred EEeCC
Confidence 99874
No 334
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.78 E-value=0.0049 Score=56.79 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=58.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCC--cEEEEcCCccchh--hHHhC----CCccC---CCHHHHhhcCCEEEEeeCChh
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLISL----GAKYQ---PSPDEVAASCDVTFAMLADPE 138 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~----g~~~~---~~~~~~~~~aDivi~~vp~~~ 138 (358)
|||+|||+ |++|..+|..+...|. ++.++|++....+ .+.+. .+... +++.+.+++||+||++...+.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 58999999 9999999999988774 7889998711111 12221 11111 233577899999999875421
Q ss_pred ---hHhh-hhccc--------ccccccCCCCCEEEEccCC
Q 018303 139 ---SAMD-VACGK--------HGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 139 ---~~~~-~~~~~--------~~~~~~l~~~~~vi~~s~~ 166 (358)
.++. ++..| +.+.+ ..|++++|+.++-
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~-~~p~a~vivvtNP 119 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAK-ACPKALILIISNP 119 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCc
Confidence 1111 11011 22322 3578899988663
No 335
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.78 E-value=0.0044 Score=53.97 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRT 102 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~ 102 (358)
.+...+|.|||+|.+|+.++..|+..|.. +.++|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45667999999999999999999999974 8889886
No 336
>PRK15076 alpha-galactosidase; Provisional
Probab=96.77 E-value=0.0016 Score=62.85 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=47.4
Q ss_pred CeEEEEcCChhHHHHHH--HHH----HCCCcEEEEcCCccchhhHHh--------CC----CccCCCHHHHhhcCCEEEE
Q 018303 71 GRIGFLGMGIMGTPMAQ--NLL----KAGCDVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFA 132 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~--~l~----~~g~~V~~~~~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivi~ 132 (358)
+||+|||+|++|...+. .+. -.+.+|.++|+++++.+.... .+ +..++|..+++++||+|++
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 58999999999966544 332 135689999999877653211 11 3446677899999999999
Q ss_pred eeCC
Q 018303 133 MLAD 136 (358)
Q Consensus 133 ~vp~ 136 (358)
++..
T Consensus 82 ti~v 85 (431)
T PRK15076 82 AIQV 85 (431)
T ss_pred eeee
Confidence 9854
No 337
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.77 E-value=0.018 Score=52.70 Aligned_cols=41 Identities=27% Similarity=0.489 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH-CCCcEEE-EcCCccchhhH
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLK-AGCDVTV-WNRTKSKCDPL 109 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~-~g~~V~~-~~~~~~~~~~~ 109 (358)
+.-|||+||+|.||+.+....+. .|++|.. .||+.+...+.
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A 58 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRA 58 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHH
Confidence 34589999999999999988875 6888764 67887765544
No 338
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.77 E-value=0.0059 Score=56.35 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=57.6
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCC--cEEEEcCCccchhh--HHhC----CCcc-C-C-CHHHHhhcCCEEEEeeCChh-
Q 018303 72 RIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDP--LISL----GAKY-Q-P-SPDEVAASCDVTFAMLADPE- 138 (358)
Q Consensus 72 ~IgIIG~-G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~--~~~~----g~~~-~-~-~~~~~~~~aDivi~~vp~~~- 138 (358)
||+|||+ |++|..+|..+...+. ++.++|+++...+. +.+. .+.. . + ++.+.+++||+||++...+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5999999 9999999999987764 78899987622111 1111 1111 1 1 23578899999999885321
Q ss_pred --hHh-hhhccc--------ccccccCCCCCEEEEccCC
Q 018303 139 --SAM-DVACGK--------HGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 139 --~~~-~~~~~~--------~~~~~~l~~~~~vi~~s~~ 166 (358)
..+ +++..+ +++.+ ..|++++|++++-
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~-~~p~~iiivvsNP 118 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAE-SCPKAMILVITNP 118 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHH-hCCCeEEEEecCc
Confidence 111 111001 23322 3588888888663
No 339
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.76 E-value=0.01 Score=52.48 Aligned_cols=112 Identities=21% Similarity=0.241 Sum_probs=68.4
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCC-CcEE-EEcCCccch-----hhH---HhCCCccCCCHHHHhhcCCEEEEeeCChh
Q 018303 70 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVT-VWNRTKSKC-----DPL---ISLGAKYQPSPDEVAASCDVTFAMLADPE 138 (358)
Q Consensus 70 ~~~IgIIG~-G~iG~~~a~~l~~~g-~~V~-~~~~~~~~~-----~~~---~~~g~~~~~~~~~~~~~aDivi~~vp~~~ 138 (358)
+++|+|.|+ |+||+.+.+.+.... +++. .+++.++.. ..+ ...++...+++.....++|++|=-+ .|.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT-~P~ 80 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT-TPE 80 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC-Cch
Confidence 468999999 999999999998754 5544 567765422 111 1235566667777888999999888 466
Q ss_pred hHhhhhcccccccccCCCCCEEEEccCC-ChhHHHHHHHHHHhcCCeEecCCC
Q 018303 139 SAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPV 190 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~ 190 (358)
.+...+ +-. ++.+..+|--++| +....+.+.+..+. +..+-+|.
T Consensus 81 ~~~~~l---~~~---~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~N 125 (266)
T COG0289 81 ATLENL---EFA---LEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPN 125 (266)
T ss_pred hhHHHH---HHH---HHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEecc
Confidence 666666 222 2334434434444 44444455555443 44444443
No 340
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.73 E-value=0.0095 Score=55.40 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=46.3
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCC-------CcEEEEcCCccc--hhh----HHh------CCCccCCCHHHHhhcCCEE
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAG-------CDVTVWNRTKSK--CDP----LIS------LGAKYQPSPDEVAASCDVT 130 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g-------~~V~~~~~~~~~--~~~----~~~------~g~~~~~~~~~~~~~aDiv 130 (358)
.+|+|+|+ |.+|+.++..|...+ .+|.++|+++.. .+. +.+ ..+....++.+.+++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 47999999 999999999998744 489999986532 221 111 0122235666888999999
Q ss_pred EEeeCC
Q 018303 131 FAMLAD 136 (358)
Q Consensus 131 i~~vp~ 136 (358)
|++.-.
T Consensus 83 I~tAG~ 88 (325)
T cd01336 83 ILVGAM 88 (325)
T ss_pred EEeCCc
Confidence 998743
No 341
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.71 E-value=0.0034 Score=57.86 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=45.8
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhH----HhC-------CCccCCCHHHHhhcCCEEEEeeC
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPL----ISL-------GAKYQPSPDEVAASCDVTFAMLA 135 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~----~~~-------g~~~~~~~~~~~~~aDivi~~vp 135 (358)
||+|||+|.+|..+|..+...+. ++.++|++.++++.. .+. ......+..+.+++||+||++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 59999999999999999987774 689999987654322 110 11122223466899999999874
No 342
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=96.68 E-value=0.0068 Score=58.32 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=49.4
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHC-------CC--cEEEEcCCccchhhHH----h------CCCccCCCHHHHhhcCCE
Q 018303 70 PGRIGFLGM-GIMGTPMAQNLLKA-------GC--DVTVWNRTKSKCDPLI----S------LGAKYQPSPDEVAASCDV 129 (358)
Q Consensus 70 ~~~IgIIG~-G~iG~~~a~~l~~~-------g~--~V~~~~~~~~~~~~~~----~------~g~~~~~~~~~~~~~aDi 129 (358)
..+|+|||+ |++|..+|..+... |. ++..+|++.++++... + ..+....+..+.+++||+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 468999999 99999999999876 54 6888999887765322 1 022323345577899999
Q ss_pred EEEeeCC
Q 018303 130 TFAMLAD 136 (358)
Q Consensus 130 vi~~vp~ 136 (358)
||++...
T Consensus 180 VVitAG~ 186 (444)
T PLN00112 180 ALLIGAK 186 (444)
T ss_pred EEECCCC
Confidence 9998754
No 343
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.68 E-value=0.0035 Score=55.31 Aligned_cols=64 Identities=28% Similarity=0.345 Sum_probs=49.3
Q ss_pred EEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccc--hhhHHhCCCcc-------CCCHHHHhhcCCEEEEeeCC
Q 018303 73 IGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAKY-------QPSPDEVAASCDVTFAMLAD 136 (358)
Q Consensus 73 IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~--~~~~~~~g~~~-------~~~~~~~~~~aDivi~~vp~ 136 (358)
|.|+|+ |.+|+.+++.|.+.+++|.+..|++.+ .+.+.+.|+.. .+++.++++.+|.|++++|.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 679986 999999999999999999999998643 34455555432 22455678899999999973
No 344
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.66 E-value=0.0054 Score=59.85 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=49.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc-cch----hhHHhCCCcc--CCCHHHHhhcCCEEEEeeC
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK-SKC----DPLISLGAKY--QPSPDEVAASCDVTFAMLA 135 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~-~~~----~~~~~~g~~~--~~~~~~~~~~aDivi~~vp 135 (358)
+.+++|.|+|.|.+|..+|+.|++.|++|+++|++. +.. +.+...|+.. .+..++....+|+||.+.-
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g 77 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPG 77 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCC
Confidence 456899999999999999999999999999999975 222 2222334332 2233455678999999874
No 345
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.66 E-value=0.0077 Score=55.30 Aligned_cols=100 Identities=16% Similarity=0.298 Sum_probs=60.8
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC-----CC---cc-CCCHHHH-hhcCCEEEEeeCCh
Q 018303 70 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-----GA---KY-QPSPDEV-AASCDVTFAMLADP 137 (358)
Q Consensus 70 ~~~IgIIG~-G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-----g~---~~-~~~~~~~-~~~aDivi~~vp~~ 137 (358)
++||+|+|+ |.-|..+.+.|...- .++..+..+..+-+.+.+. |. .. ..+.+++ .++||+||+|+|..
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg 81 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHG 81 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCch
Confidence 468999987 999999999998753 5666555433222323221 11 11 1133343 45599999999854
Q ss_pred hhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHH
Q 018303 138 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING 176 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~ 176 (358)
....++ .++ +.+|..|||+|...-.....+.+
T Consensus 82 -~s~~~v---~~l---~~~g~~VIDLSadfR~~d~~~ye 113 (349)
T COG0002 82 -VSAELV---PEL---LEAGCKVIDLSADFRLKDPEVYE 113 (349)
T ss_pred -hHHHHH---HHH---HhCCCeEEECCcccccCCHHHHH
Confidence 444444 333 34566699999876554334433
No 346
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.65 E-value=0.033 Score=48.24 Aligned_cols=71 Identities=28% Similarity=0.306 Sum_probs=51.6
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc-cchhhHHhCC-Ccc---CCCHHHHhhcCCEEEEeeCChh
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK-SKCDPLISLG-AKY---QPSPDEVAASCDVTFAMLADPE 138 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~-~~~~~~~~~g-~~~---~~~~~~~~~~aDivi~~vp~~~ 138 (358)
++++++|.|||.|..|..=++.|.+.|.+|+++..+. +....+.+.+ +.. .-+.++ +..+++|+.+++++.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~ 84 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEE 84 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHH
Confidence 6788999999999999999999999999999998866 3333333332 211 123334 345999999996543
No 347
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.64 E-value=0.0069 Score=56.63 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 103 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~ 103 (358)
.+...+|.|||+|.+|+.+|..|+..|. ++.++|.+.
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 3556799999999999999999999998 899999864
No 348
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.63 E-value=0.0067 Score=56.32 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=45.8
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCCc--cchhhH----HhC------CCccCCCHHHHhhcCCEEE
Q 018303 72 RIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTK--SKCDPL----ISL------GAKYQPSPDEVAASCDVTF 131 (358)
Q Consensus 72 ~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~--~~~~~~----~~~------g~~~~~~~~~~~~~aDivi 131 (358)
||+|||+ |++|..++..|...|. ++.++|+++ +..+.. .+. +.....+..+.+++||+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 7999999 9999999999987552 488999976 433211 111 1222245678899999999
Q ss_pred EeeC
Q 018303 132 AMLA 135 (358)
Q Consensus 132 ~~vp 135 (358)
++.-
T Consensus 82 itAG 85 (323)
T cd00704 82 LVGA 85 (323)
T ss_pred EeCC
Confidence 9874
No 349
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.62 E-value=0.0051 Score=54.22 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 103 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~ 103 (358)
.+...+|.|+|+|.+|+.+++.|+..|. +++++|.+.
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 3556799999999999999999999996 688888754
No 350
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.62 E-value=0.0077 Score=58.78 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=52.4
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC--CCcc----CCCHHHH----hhcCCEEEEeeCCh
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKY----QPSPDEV----AASCDVTFAMLADP 137 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~--g~~~----~~~~~~~----~~~aDivi~~vp~~ 137 (358)
...++|.|+|+|.+|..+++.|.+.|++|++++++++..+.+.+. +... ..+.+.+ ++++|.|+++++.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 346789999999999999999999999999999999887776553 2221 1222222 35789998888643
No 351
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.61 E-value=0.006 Score=56.88 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=53.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCcEE---EEcCCccchh-hHHhCC--CccC-CCHHHHhhcCCEEEEeeCChhhHhh
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGCDVT---VWNRTKSKCD-PLISLG--AKYQ-PSPDEVAASCDVTFAMLADPESAMD 142 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~---~~~~~~~~~~-~~~~~g--~~~~-~~~~~~~~~aDivi~~vp~~~~~~~ 142 (358)
++|+|+|+ |.+|..+.+.|.+.+|++. .. .+.++.. .+...+ ..+. .+..+ ++++|++++++| ......
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p-~~~s~~ 81 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAG-AAVSRS 81 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCC-HHHHHH
Confidence 68999997 9999999999997666432 22 2222211 111111 1111 12233 478999999998 344444
Q ss_pred hhcccccccccCCCCCEEEEccCCC
Q 018303 143 VACGKHGAASGMGPGKGYVDVSTVD 167 (358)
Q Consensus 143 ~~~~~~~~~~~l~~~~~vi~~s~~~ 167 (358)
++ +.+ .+.|..+||.|...
T Consensus 82 ~v---~~~---~~~G~~VIDlS~~f 100 (336)
T PRK05671 82 FA---EKA---RAAGCSVIDLSGAL 100 (336)
T ss_pred HH---HHH---HHCCCeEEECchhh
Confidence 54 333 34688999998543
No 352
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.61 E-value=0.012 Score=53.56 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=38.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCccchhhHHhCCC
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGA 114 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g~ 114 (358)
.+.+|.|+|.|.+|...++.++..|.+ |++.++++++.+.+.+.|.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 166 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA 166 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 467899999999999999999999987 8888888877766666554
No 353
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.60 E-value=0.007 Score=58.11 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=68.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEE--------EcCC---ccchhhHHh---C-------------CCccCCC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV--------WNRT---KSKCDPLIS---L-------------GAKYQPS 119 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~--------~~~~---~~~~~~~~~---~-------------g~~~~~~ 119 (358)
++.++||.|-|+|++|...|+.|.+.|.+|++ ||.+ .++++.+.+ . +.... +
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~ 303 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-A 303 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-C
Confidence 57789999999999999999999999999988 6743 222211111 0 22222 2
Q ss_pred HHHHh-hcCCEEEEeeCChhhHhhhhcccccccccCC--CCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 120 PDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMG--PGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 120 ~~~~~-~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~--~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
.++++ .+|||++-|. +++.+ +.+..+.+. .-++|+.-+++ |.+. +-.+.|.++|+.++.
T Consensus 304 ~~~~~~~~cDVliPcA-----l~n~I--~~~na~~l~~~~ak~V~EgAN~-p~t~-eA~~iL~~rGI~~vP 365 (445)
T PRK14030 304 GKKPWEQKVDIALPCA-----TQNEL--NGEDADKLIKNGVLCVAEVSNM-GCTA-EAIDKFIAAKQLFAP 365 (445)
T ss_pred CccceeccccEEeecc-----ccccC--CHHHHHHHHHcCCeEEEeCCCC-CCCH-HHHHHHHHCCCEEeC
Confidence 23333 3588887666 44444 333333332 23456666666 5555 455778888887764
No 354
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.59 E-value=0.0061 Score=52.44 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=65.8
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLA 135 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp 135 (358)
.+...+|.|+|+|.+|..+++.|+..|. ++.++|.+.-....+..+ |-..+....+.++ +.|+-+.+.+
T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 3556799999999999999999999997 588898764322222111 1111111111111 2555555443
Q ss_pred ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303 136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 192 (358)
... .... .++ ++.-.++|++. ........+.+.+.+.++.++.+.+.+
T Consensus 98 ~~~--~~~~---~~~---~~~~dvVi~~~-~~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 98 DDI--SEKP---EEF---FSQFDVVVATE-LSRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred cCc--cccH---HHH---HhCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 211 1111 222 22335666653 345555667788888888777766544
No 355
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.58 E-value=0.0031 Score=52.53 Aligned_cols=67 Identities=10% Similarity=0.185 Sum_probs=46.8
Q ss_pred CCeEEEEcCChhHHHHHHHH--HHCCCcEE-EEcCCccchhhHHhC-CCccCCCHHHHhh--cCCEEEEeeCC
Q 018303 70 PGRIGFLGMGIMGTPMAQNL--LKAGCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLAD 136 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l--~~~g~~V~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivi~~vp~ 136 (358)
.-++.|||+|++|++++..= ...|+++. ++|.+++........ .+.-.+++++.++ +.|+.++|||.
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 34799999999999999873 35778765 689988765432221 1223445666666 68899999984
No 356
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.56 E-value=0.0025 Score=60.31 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 102 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~ 102 (358)
.+...+|.|||+|.+|..++..|+..|. ++.++|.+
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3556799999999999999999999996 78888876
No 357
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.55 E-value=0.022 Score=55.67 Aligned_cols=113 Identities=10% Similarity=0.027 Sum_probs=73.9
Q ss_pred CCCCCeEEEEcC----------ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC----------------------CC
Q 018303 67 DELPGRIGFLGM----------GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----------------------GA 114 (358)
Q Consensus 67 ~~~~~~IgIIG~----------G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----------------------g~ 114 (358)
.+.+++|+|+|+ ..-...+++.|.+.|.+|.+||+.-...+.-... ++
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 367789999998 4578899999999999999999864332110011 13
Q ss_pred ccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303 115 KYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 188 (358)
Q Consensus 115 ~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~ 188 (358)
....+..++++++|+|+++++.+ +.+.+- -+.+...|++..+|+|.-+.-. . +.+++.|..|...
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~l~--~~~~~~~m~~~~~viD~rn~l~--~----~~~~~~G~~y~~~ 465 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWD-EFKTLD--YQKIYDNMQKPAFVFDGRNVLD--H----EKLREIGFIVYSI 465 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCCh-HhcccC--HHHHHHhccCCCEEEECCCCCC--H----HHHHhCCcEEEEe
Confidence 44556678999999999999644 444331 0444455666668999765542 2 2223446666553
No 358
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.53 E-value=0.0065 Score=48.80 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=61.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeCChhh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLADPES 139 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp~~~~ 139 (358)
++|.|+|+|.+|+.+++.|+..|. ++.++|.+.=....+..+ |...+.-..+.+. ..++=+.+.|...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~- 81 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI- 81 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc-
Confidence 589999999999999999999997 688898754322221111 2111111222222 1233344443222
Q ss_pred HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCC
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~ 191 (358)
....+ .+++ +.-.++|++.. .......+.+.+.+.++.++.+...
T Consensus 82 ~~~~~---~~~~---~~~d~vi~~~d-~~~~~~~l~~~~~~~~~p~i~~~~~ 126 (135)
T PF00899_consen 82 DEENI---EELL---KDYDIVIDCVD-SLAARLLLNEICREYGIPFIDAGVN 126 (135)
T ss_dssp SHHHH---HHHH---HTSSEEEEESS-SHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred ccccc---cccc---cCCCEEEEecC-CHHHHHHHHHHHHHcCCCEEEEEee
Confidence 12222 2222 23356666543 3555567777888888877766543
No 359
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.53 E-value=0.017 Score=56.39 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=68.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc--hhhHHh--CCCccCC--CHHHHhhcCCEEEEee--CC-hhhH
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLIS--LGAKYQP--SPDEVAASCDVTFAML--AD-PESA 140 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~--~~~~~~--~g~~~~~--~~~~~~~~aDivi~~v--p~-~~~~ 140 (358)
+-.|.|||.|..|.++|+.|.+.|++|.++|..... .+.+.+ .|+.... ...+.+.++|+||+.- |. .+..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 458999999999999999999999999999975432 223443 2554421 1234567899887754 21 2222
Q ss_pred hhhh------cccccccccCCCCCEE-EEccCCChhHHHHHHHHHHhcCCeE
Q 018303 141 MDVA------CGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGASF 185 (358)
Q Consensus 141 ~~~~------~~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~~~ 185 (358)
...- .+..+++..+.+..+| |--+.|+..+..-+...|...|..+
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~ 137 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRV 137 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCe
Confidence 2111 0112333332233333 3335566777777777787765433
No 360
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.52 E-value=0.015 Score=54.81 Aligned_cols=110 Identities=18% Similarity=0.276 Sum_probs=69.3
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc------------------chhhHHhC-CCccCCCHHHHh-hc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS------------------KCDPLISL-GAKYQPSPDEVA-AS 126 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~------------------~~~~~~~~-g~~~~~~~~~~~-~~ 126 (358)
+++++||.|=|.|++|+..|+.+...|.+|++++-+.. +...+.+. +...... ++++ -+
T Consensus 204 ~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~~ 282 (411)
T COG0334 204 DLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEVD 282 (411)
T ss_pred CcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccccc
Confidence 37889999999999999999999999999988766554 22222221 3344433 4444 36
Q ss_pred CCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 127 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 127 aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
|||++=|. +++.+ +.+-.+.++.. +|+.-++++.. .+ ..+.+.++|+.|+.
T Consensus 283 cDIl~PcA-----~~n~I--~~~na~~l~ak-~V~EgAN~P~t-~e-A~~i~~erGIl~~P 333 (411)
T COG0334 283 CDILIPCA-----LENVI--TEDNADQLKAK-IVVEGANGPTT-PE-ADEILLERGILVVP 333 (411)
T ss_pred CcEEcccc-----ccccc--chhhHHHhhhc-EEEeccCCCCC-HH-HHHHHHHCCCEEcC
Confidence 89876554 55555 34444555544 56655555443 33 34444577876653
No 361
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.49 E-value=0.015 Score=54.52 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=39.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCc
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAK 115 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~ 115 (358)
.+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 46799999999999999999999998 588899988887766666643
No 362
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.47 E-value=0.0095 Score=54.73 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=44.7
Q ss_pred EEcCChhHHHHHHHHHHCCC--cEEEEcCCccchhhHH----h------CCCccCCCHHHHhhcCCEEEEeeCC
Q 018303 75 FLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----S------LGAKYQPSPDEVAASCDVTFAMLAD 136 (358)
Q Consensus 75 IIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~----~------~g~~~~~~~~~~~~~aDivi~~vp~ 136 (358)
|||+|++|..+|..+...+. ++.++|++.++++... + .......+..+.+++||+||++.-.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA 74 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence 69999999999999987774 6999999876544322 1 1122333445678999999998753
No 363
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.47 E-value=0.013 Score=55.12 Aligned_cols=89 Identities=29% Similarity=0.353 Sum_probs=56.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcC---CccchhhHHhCCCccCCCH----HH--HhhcCCEEEEeeCChhh
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR---TKSKCDPLISLGAKYQPSP----DE--VAASCDVTFAMLADPES 139 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~---~~~~~~~~~~~g~~~~~~~----~~--~~~~aDivi~~vp~~~~ 139 (358)
.+.+|.|+|+|.+|...++.++..|.+|++.++ ++++.+.+.+.|+...... .+ .....|+|+-++..+..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~ 251 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPL 251 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHH
Confidence 457899999999999999999999999999988 4556555555555432111 11 11235777777743222
Q ss_pred HhhhhcccccccccCCCCCEEEEcc
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVS 164 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s 164 (358)
+.. .+..++++..++.++
T Consensus 252 ~~~-------~~~~l~~~G~~v~~G 269 (355)
T cd08230 252 AFE-------ALPALAPNGVVILFG 269 (355)
T ss_pred HHH-------HHHHccCCcEEEEEe
Confidence 222 234556666555544
No 364
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.47 E-value=0.011 Score=56.81 Aligned_cols=112 Identities=16% Similarity=0.093 Sum_probs=66.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEE-Ec----------CCccchh---hHHh------------CCCccCCCH
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WN----------RTKSKCD---PLIS------------LGAKYQPSP 120 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~-~~----------~~~~~~~---~~~~------------~g~~~~~~~ 120 (358)
++.++||.|.|+|++|...|+.|.+.|.+|++ .| .+.++.. .+.. .+.... +.
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~ 303 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EG 303 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CC
Confidence 67889999999999999999999999999887 55 2221111 0000 022222 33
Q ss_pred HHHh-hcCCEEEEeeCChhhHhhhhcccccccccCC-CCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 121 DEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMG-PGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 121 ~~~~-~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~-~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
++++ .+|||++=|. +++.+ +.+..+.++ ++..+|..+...|.+.+ -.+.+.++++.++.
T Consensus 304 d~~~~~~cDIliPaA-----l~n~I--~~~na~~l~a~g~~~V~EgAN~P~t~e-A~~~L~~rgI~~~P 364 (444)
T PRK14031 304 ARPWGEKGDIALPSA-----TQNEL--NGDDARQLVANGVIAVSEGANMPSTPE-AIKVFQDAKILYAP 364 (444)
T ss_pred cccccCCCcEEeecc-----ccccc--CHHHHHHHHhcCCeEEECCCCCCCCHH-HHHHHHHCCcEEeC
Confidence 3432 4588887766 33444 333334443 34444444444466654 44567777877763
No 365
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.44 E-value=0.012 Score=52.55 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=64.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLA 135 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp 135 (358)
.+...+|.|||+|.+|+.+++.|+..|. +++++|.+.-....+..+ |-..+....+.+. +.++-+.+.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 3566799999999999999999999996 688888764332222211 1111111112121 2344444443
Q ss_pred ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCC
Q 018303 136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPV 190 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~ 190 (358)
..- ...-+ . ..++.-.+||+++- .+.....+.+.+...++.++.+.+
T Consensus 109 ~~i-~~~~~---~---~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~ip~v~~~~ 155 (245)
T PRK05690 109 ARL-DDDEL---A---ALIAGHDLVLDCTD-NVATRNQLNRACFAAKKPLVSGAA 155 (245)
T ss_pred ccC-CHHHH---H---HHHhcCCEEEecCC-CHHHHHHHHHHHHHhCCEEEEeee
Confidence 211 11111 1 12334457776643 444455566777777777776544
No 366
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.42 E-value=0.0063 Score=56.33 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=46.2
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCC--CcEEEEcCCccchh--hHHhC----CCccCCC---HHHHhhcCCEEEEeeC
Q 018303 68 ELPGRIGFLGM-GIMGTPMAQNLLKAG--CDVTVWNRTKSKCD--PLISL----GAKYQPS---PDEVAASCDVTFAMLA 135 (358)
Q Consensus 68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~--~~~~~----g~~~~~~---~~~~~~~aDivi~~vp 135 (358)
..++||+|||+ |++|+.++..++..+ .++.++|++....+ .+.+. .+...++ ..+.++++|+||++.-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 44569999999 999999999998554 57999998432221 11111 1111212 2578899999999874
Q ss_pred C
Q 018303 136 D 136 (358)
Q Consensus 136 ~ 136 (358)
.
T Consensus 86 ~ 86 (321)
T PTZ00325 86 V 86 (321)
T ss_pred C
Confidence 3
No 367
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.42 E-value=0.01 Score=53.89 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=26.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 102 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~ 102 (358)
+|.|||+|.+|..+|+.|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 58999999999999999999996 57777653
No 368
>PRK08328 hypothetical protein; Provisional
Probab=96.38 E-value=0.026 Score=49.83 Aligned_cols=118 Identities=14% Similarity=0.194 Sum_probs=69.1
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccCCC-----HHHH----hh--cCCEEEEee
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPS-----PDEV----AA--SCDVTFAML 134 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~-----~~~~----~~--~aDivi~~v 134 (358)
.+...+|.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+-.....+ -.++ ++ +.|+.+.+.
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~ 103 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF 103 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 3556799999999999999999999996 6888887654433332211100000 1111 11 467777665
Q ss_pred CChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303 135 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192 (358)
Q Consensus 135 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 192 (358)
+..- .+.-+ .+ .++.-.+||++.-. ......+.+.+...++.++.+.+.+
T Consensus 104 ~~~~-~~~~~---~~---~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 104 VGRL-SEENI---DE---VLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred eccC-CHHHH---HH---HHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 4221 11112 12 23455678877443 4445556667777788887765543
No 369
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.37 E-value=0.0099 Score=55.21 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=44.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCC-------cEEEEcCCccc--hhh----HHhC------CCccCCCHHHHhhcCCEEE
Q 018303 72 RIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LISL------GAKYQPSPDEVAASCDVTF 131 (358)
Q Consensus 72 ~IgIIG~-G~iG~~~a~~l~~~g~-------~V~~~~~~~~~--~~~----~~~~------g~~~~~~~~~~~~~aDivi 131 (358)
+|+|||+ |++|..++..+...+. ++.++|++++. .+. +.+. .+....+..+.+++||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999987553 58899986542 211 1110 1222225467889999999
Q ss_pred EeeCC
Q 018303 132 AMLAD 136 (358)
Q Consensus 132 ~~vp~ 136 (358)
++.-.
T Consensus 81 itAG~ 85 (324)
T TIGR01758 81 LVGAF 85 (324)
T ss_pred EcCCC
Confidence 98743
No 370
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.35 E-value=0.013 Score=53.94 Aligned_cols=79 Identities=23% Similarity=0.279 Sum_probs=53.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccc
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 148 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~ 148 (358)
.+|+|||+ |..|..+.+.|.... .++.....+..+ . . .+.++.++++|++|+|+|.. ....+. +
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-~------~---~~~~~~~~~~DvvFlalp~~-~s~~~~---~ 68 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-D------A---AARRELLNAADVAILCLPDD-AAREAV---A 68 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-c------c---cCchhhhcCCCEEEECCCHH-HHHHHH---H
Confidence 58999995 999999999998865 344433332221 1 1 23345667899999999844 444444 3
Q ss_pred cccccCCCCCEEEEccCC
Q 018303 149 GAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 149 ~~~~~l~~~~~vi~~s~~ 166 (358)
++ .+.|..|||.|..
T Consensus 69 ~~---~~~g~~VIDlSad 83 (313)
T PRK11863 69 LI---DNPATRVIDASTA 83 (313)
T ss_pred HH---HhCCCEEEECChh
Confidence 33 2468899999854
No 371
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.34 E-value=0.016 Score=53.31 Aligned_cols=121 Identities=23% Similarity=0.283 Sum_probs=68.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--------CCcEE---EEcCCccchhhHHhCC-CccCCCH-----HHHhh--cCCEEE
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKA--------GCDVT---VWNRTKSKCDPLISLG-AKYQPSP-----DEVAA--SCDVTF 131 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~--------g~~V~---~~~~~~~~~~~~~~~g-~~~~~~~-----~~~~~--~aDivi 131 (358)
.+|+|+|+|.+|+.+++.+.+. |.++. +.+|+........-.+ ..+..+. .+++. +.|+|+
T Consensus 4 v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvv 83 (333)
T COG0460 4 VKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDVVV 83 (333)
T ss_pred EEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCEEE
Confidence 5899999999999999999864 34433 3455443322111011 1222333 34443 467999
Q ss_pred EeeCC-hhhHhhhhcccccccccCCCCCEEEEccCCCh-hHHHHHHHHHHhcCCe-EecCCCCCCCC
Q 018303 132 AMLAD-PESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGAS-FLEAPVSGSKK 195 (358)
Q Consensus 132 ~~vp~-~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~-~~~~~~~~~~~ 195 (358)
.+++- ....+. . ..+...++.|.+||-..-... ..-.++.+..++.+.. +..+.+.++.|
T Consensus 84 e~~~~d~~~~~~-~---~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 84 ELVGGDVEPAEP-A---DLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred ecCcccCCchhh-H---HHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 99975 333443 3 445677889999984322211 2234577776666654 44455554443
No 372
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=96.34 E-value=0.006 Score=57.09 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=53.8
Q ss_pred eEEEEc-CChhHHHHHHHHHHCCCcE---EEEcCCccchhhHHhCC--CccC-CCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303 72 RIGFLG-MGIMGTPMAQNLLKAGCDV---TVWNRTKSKCDPLISLG--AKYQ-PSPDEVAASCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 72 ~IgIIG-~G~iG~~~a~~l~~~g~~V---~~~~~~~~~~~~~~~~g--~~~~-~~~~~~~~~aDivi~~vp~~~~~~~~~ 144 (358)
+|+||| .|.+|..+.+.|.+.+|++ .++.+..+..+.+...+ .... .+. +.++++|+|++|+| ........
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~-~~~~~~D~v~~a~g-~~~s~~~a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKI-ESFEGIDIALFSAG-GSVSKEFA 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCCh-HHhcCCCEEEECCC-HHHHHHHH
Confidence 589999 5999999999999988763 23333332222222112 1111 122 34578999999997 44555555
Q ss_pred cccccccccCCCCCEEEEccC
Q 018303 145 CGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi~~s~ 165 (358)
+.+ ++.|..|||.|.
T Consensus 79 ---~~~---~~~G~~VID~ss 93 (339)
T TIGR01296 79 ---PKA---AKCGAIVIDNTS 93 (339)
T ss_pred ---HHH---HHCCCEEEECCH
Confidence 333 346888999875
No 373
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.32 E-value=0.018 Score=55.33 Aligned_cols=112 Identities=20% Similarity=0.188 Sum_probs=67.2
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEE-EEcCC----------ccchhhHHh---C-------------CCccCCC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLIS---L-------------GAKYQPS 119 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~-~~~~~----------~~~~~~~~~---~-------------g~~~~~~ 119 (358)
++.++||.|=|+|++|...|+.|.+.|.+|+ +.|.+ .+++..+.+ . +.... +
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~-~ 312 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV-P 312 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-C
Confidence 5788999999999999999999999999988 66665 222211111 0 12222 1
Q ss_pred HHHHh-hcCCEEEEeeCChhhHhhhhcccccccccC-CCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 120 PDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGM-GPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 120 ~~~~~-~~aDivi~~vp~~~~~~~~~~~~~~~~~~l-~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
.++++ -+|||.+-|. +.+.+ +.+-.+.+ +.++.+|--+...|.+. +-.+.+.++++.++.
T Consensus 313 ~~~~~~~~cDI~iPcA-----~~n~I--~~~~a~~l~~~~ak~V~EgAN~p~t~-eA~~~L~~~GI~~~P 374 (454)
T PTZ00079 313 GKKPWEVPCDIAFPCA-----TQNEI--NLEDAKLLIKNGCKLVAEGANMPTTI-EATHLFKKNGVIFCP 374 (454)
T ss_pred CcCcccCCccEEEecc-----ccccC--CHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHCCcEEEC
Confidence 22222 3688887665 34444 22222222 33444444444445555 455778888887764
No 374
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.32 E-value=0.015 Score=54.72 Aligned_cols=89 Identities=21% Similarity=0.287 Sum_probs=61.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHh-CCCccCCCH-H--------HHh--hcCCEEEEeeCCh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-LGAKYQPSP-D--------EVA--ASCDVTFAMLADP 137 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~-~g~~~~~~~-~--------~~~--~~aDivi~~vp~~ 137 (358)
.++.|+|+|.||...+..++..|. +|++.|+++++++..++ .+.....+. + +.- ..+|+++.|+...
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~ 249 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSP 249 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence 389999999999999888888884 67888999998887766 343322221 1 111 2489999999744
Q ss_pred hhHhhhhcccccccccCCCCCEEEEccCC
Q 018303 138 ESAMDVACGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
...... +..++++..++.++-.
T Consensus 250 ~~~~~a-------i~~~r~gG~v~~vGv~ 271 (350)
T COG1063 250 PALDQA-------LEALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHHH-------HHHhcCCCEEEEEecc
Confidence 333333 4567777777766544
No 375
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=96.31 E-value=0.035 Score=43.81 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHcCCC--HHHHHHHHhhccccchhhhccccccccCCCCCC--CchhhHHHHHHHHHHHHHhcCCCc
Q 018303 249 SMMATFSEGLLHSEKVGLD--PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQST 324 (358)
Q Consensus 249 ~~~~~~~Ea~~l~~~~G~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gi~~ 324 (358)
.+..++.|+..++++.|++ .+.+.+.+.......+ ...++|.. |+..| .+++.. .+.++++++++|+++
T Consensus 39 ~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~---~~~~SM~~-D~~~gr~tEid~i---~G~vv~~a~~~gv~~ 111 (125)
T PF08546_consen 39 LIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTP---DNRSSMLQ-DIEAGRPTEIDYI---NGYVVRLAKKHGVPT 111 (125)
T ss_dssp HHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTT---TT--HHHH-HHHTTB--SHHHT---HHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC---CccccHHH-HHHHcccccHHHH---HHHHHHHHHHHCCCC
Confidence 3566889999999999974 3334444432211100 01222322 22222 234444 789999999999999
Q ss_pred hHHHHHHHHHHHH
Q 018303 325 PIAAAANELYKVA 337 (358)
Q Consensus 325 p~~~a~~~~~~~a 337 (358)
|.++.++++++..
T Consensus 112 P~~~~i~~lvk~~ 124 (125)
T PF08546_consen 112 PVNETIYALVKAI 124 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh
Confidence 9999999988753
No 376
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=96.31 E-value=0.017 Score=54.64 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=45.8
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCC-c----EE--EE--cCCccchhhHH----h------CCCccCCCHHHHhhcCCE
Q 018303 70 PGRIGFLGM-GIMGTPMAQNLLKAGC-D----VT--VW--NRTKSKCDPLI----S------LGAKYQPSPDEVAASCDV 129 (358)
Q Consensus 70 ~~~IgIIG~-G~iG~~~a~~l~~~g~-~----V~--~~--~~~~~~~~~~~----~------~g~~~~~~~~~~~~~aDi 129 (358)
..||+|||+ |++|..+|-.+...|. . |. ++ |++.++++... + ..+....+..+.+++||+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDI 123 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADW 123 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCE
Confidence 358999999 9999999999987653 2 33 34 77776654321 1 122323445577899999
Q ss_pred EEEeeCC
Q 018303 130 TFAMLAD 136 (358)
Q Consensus 130 vi~~vp~ 136 (358)
||++...
T Consensus 124 VVitAG~ 130 (387)
T TIGR01757 124 ALLIGAK 130 (387)
T ss_pred EEECCCC
Confidence 9998743
No 377
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.30 E-value=0.023 Score=55.95 Aligned_cols=116 Identities=22% Similarity=0.205 Sum_probs=68.2
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-----hhhHHhCCCccCCC-HHHHhhcCCEEEEeeCC---h
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-----CDPLISLGAKYQPS-PDEVAASCDVTFAMLAD---P 137 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-----~~~~~~~g~~~~~~-~~~~~~~aDivi~~vp~---~ 137 (358)
...+++|.|||.|.+|..+|+.|...|++|.++|+++.. .+.+.+.|+..... ..+....+|+||++..- .
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~ 92 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDA 92 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCC
Confidence 345679999999999999999999999999999965421 12344456554321 11234569999988632 2
Q ss_pred hhHhhhh------ccccccc-ccCCCC----CEEEEccCCChhHHHHHHHHHHhcC
Q 018303 138 ESAMDVA------CGKHGAA-SGMGPG----KGYVDVSTVDGDTSKLINGHIKATG 182 (358)
Q Consensus 138 ~~~~~~~------~~~~~~~-~~l~~~----~~vi~~s~~~~~~~~~l~~~l~~~~ 182 (358)
+.....- .++.+++ ..+.+. .+-|--+.|+..+..-+...|...+
T Consensus 93 ~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g 148 (480)
T PRK01438 93 PLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG 148 (480)
T ss_pred HHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence 2211111 1112232 223221 2333335666667766777776643
No 378
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.30 E-value=0.018 Score=52.75 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=53.0
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303 72 RIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 149 (358)
Q Consensus 72 ~IgIIG~-G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~ 149 (358)
||+|+|. |..|..+.+.|.... +++.....+.. .. ..+.+++++++|++++|+|. ....... +.
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~-~~~~~~~~~~~D~vFlalp~-~~s~~~~---~~ 68 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KD-AAERAKLLNAADVAILCLPD-DAAREAV---SL 68 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cC-cCCHhHhhcCCCEEEECCCH-HHHHHHH---HH
Confidence 7999987 999999999998763 34443322211 11 12456777899999999984 4445554 33
Q ss_pred ccccCCCCCEEEEccCC
Q 018303 150 AASGMGPGKGYVDVSTV 166 (358)
Q Consensus 150 ~~~~l~~~~~vi~~s~~ 166 (358)
+ ...|..|||.|..
T Consensus 69 ~---~~~g~~VIDlSad 82 (310)
T TIGR01851 69 V---DNPNTCIIDASTA 82 (310)
T ss_pred H---HhCCCEEEECChH
Confidence 3 3478899999853
No 379
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=96.30 E-value=0.015 Score=51.14 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=59.9
Q ss_pred EEEEcCCccchhhHHh-CCCccCCCHHHHh-hcCCEEEEeeCChhhHhhhhcccccccccCCCCCEEEEccCC---ChhH
Q 018303 96 VTVWNRTKSKCDPLIS-LGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV---DGDT 170 (358)
Q Consensus 96 V~~~~~~~~~~~~~~~-~g~~~~~~~~~~~-~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~---~~~~ 170 (358)
+.+||+++++.+.+.+ .|+..++++++++ .+.|+|++|+|...+.+... ..++.|+.++..+.+ ....
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~-------~aL~aGkhVl~~s~gAlad~e~ 77 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAE-------KILKNGKDLLIMSVGALADREL 77 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHH-------HHHHCCCCEEEECCcccCCHHH
Confidence 4579999888777655 3677788999987 57999999998554444443 456778777766665 3455
Q ss_pred HHHHHHHHHhcCCeEe
Q 018303 171 SKLINGHIKATGASFL 186 (358)
Q Consensus 171 ~~~l~~~l~~~~~~~~ 186 (358)
.+++.+..++.|..+.
T Consensus 78 ~~~l~~aA~~~g~~l~ 93 (229)
T TIGR03855 78 RERLREVARSSGRKVY 93 (229)
T ss_pred HHHHHHHHHhcCCEEE
Confidence 7778888887766543
No 380
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.29 E-value=0.0066 Score=55.24 Aligned_cols=65 Identities=15% Similarity=0.051 Sum_probs=45.2
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC----CCccCCCHHHHh------hc-CCEEEEeeCC
Q 018303 72 RIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEVA------AS-CDVTFAMLAD 136 (358)
Q Consensus 72 ~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~~~~~~~~~~------~~-aDivi~~vp~ 136 (358)
+|.|+|+ |.+|+.+++.|.+.|++|.+..|++++....... ...-.+++.+++ +. +|.|+++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 4778877 9999999999999999999999988654311000 111122444555 45 8999988764
No 381
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.29 E-value=0.011 Score=58.61 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=47.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc--hhhHHhC--CCccC--CCHHHHhhcCCEEEEe
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISL--GAKYQ--PSPDEVAASCDVTFAM 133 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~--~~~~~~~--g~~~~--~~~~~~~~~aDivi~~ 133 (358)
+.+++|.|+|.|..|.++|+.|.+.|++|.++|..... .+.+... |+... ....+.+.++|+||..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 44578999999999999999999999999999975432 2234333 33321 1234556789999887
No 382
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.29 E-value=0.02 Score=51.05 Aligned_cols=91 Identities=11% Similarity=0.203 Sum_probs=58.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccccc
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 149 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~ 149 (358)
..++-|+|.|.+++.+++.+...|++|+++|..++.... .....++.++...| ...+
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~-------------~~~~~~~~~~~~~~-----~~~~----- 156 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE-------------DLPDGVATLVTDEP-----EAEV----- 156 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc-------------cCCCCceEEecCCH-----HHHH-----
Confidence 368999999999999999999999999999976542110 00123332222221 1222
Q ss_pred ccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeE
Q 018303 150 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 185 (358)
Q Consensus 150 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~ 185 (358)
..+.+++.+|-++++...|.+.+..++++....|
T Consensus 157 --~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~Y 190 (246)
T TIGR02964 157 --AEAPPGSYFLVLTHDHALDLELCHAALRRGDFAY 190 (246)
T ss_pred --hcCCCCcEEEEEeCChHHHHHHHHHHHhCCCCcE
Confidence 1234667777777877778877887774433333
No 383
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=96.28 E-value=0.024 Score=55.03 Aligned_cols=112 Identities=22% Similarity=0.213 Sum_probs=66.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-hhh----HH-hCCCccC--CCHHHHhhcCCEEEEeeCC---hhhH
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDP----LI-SLGAKYQ--PSPDEVAASCDVTFAMLAD---PESA 140 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~~~----~~-~~g~~~~--~~~~~~~~~aDivi~~vp~---~~~~ 140 (358)
+|.|||.|..|.++|+.|.+.|++|.++|..+.. ... +. ..|+... .+ .+.+.++|+||..--- .+..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 4789999999999999999999999999975432 111 22 2355432 23 4456789988776522 2222
Q ss_pred hhhh------cccccccccCCCCC-EEEEccCCChhHHHHHHHHHHhcCCe
Q 018303 141 MDVA------CGKHGAASGMGPGK-GYVDVSTVDGDTSKLINGHIKATGAS 184 (358)
Q Consensus 141 ~~~~------~~~~~~~~~l~~~~-~vi~~s~~~~~~~~~l~~~l~~~~~~ 184 (358)
...- .+..+++..+.+.. +-|.-+.|...+..-+...|...+..
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~ 130 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLK 130 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 2111 11223332322323 33333566777777777778776544
No 384
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.27 E-value=0.03 Score=49.69 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLA 135 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp 135 (358)
.+...+|.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+ |-..+....+.+. +.++-+.+.+
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~ 100 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN 100 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 3556799999999999999999999995 688888764333222211 1111111112222 2455555553
Q ss_pred ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303 136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 192 (358)
..-. ..-+ . +.++.-.+||++. ..+.....+.+.+.+.++.++.+...+
T Consensus 101 ~~i~-~~~~---~---~~~~~~DlVvd~~-D~~~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 101 AKLD-DAEL---A---ALIAEHDIVVDCT-DNVEVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred ccCC-HHHH---H---HHhhcCCEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 2111 1111 1 2234456777664 345555567777777788777655443
No 385
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.25 E-value=0.039 Score=53.80 Aligned_cols=116 Identities=15% Similarity=0.092 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc--hhhHHh--CCCccC--CCHHHHhhcCCEEEEeeCCh---h
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLIS--LGAKYQ--PSPDEVAASCDVTFAMLADP---E 138 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~--~~~~~~--~g~~~~--~~~~~~~~~aDivi~~vp~~---~ 138 (358)
+.+++|.|+|.|.+|.+.|+.|.+.|++|.++|.++.. .+.+.+ .|+... ...++...++|+||...--+ +
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 34579999999999999999999999999999976543 233333 254432 11234456899998875322 2
Q ss_pred hHhhhh------ccccccccc-CC--CCCEEEEc-cCCChhHHHHHHHHHHhcCC
Q 018303 139 SAMDVA------CGKHGAASG-MG--PGKGYVDV-STVDGDTSKLINGHIKATGA 183 (358)
Q Consensus 139 ~~~~~~------~~~~~~~~~-l~--~~~~vi~~-s~~~~~~~~~l~~~l~~~~~ 183 (358)
..+... .+..+++.. ++ +..+|--+ +.|+..+..-+...|...+.
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~ 137 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL 137 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 332221 011223322 22 12333333 55666677777777776554
No 386
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.25 E-value=0.012 Score=56.06 Aligned_cols=118 Identities=20% Similarity=0.172 Sum_probs=64.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLA 135 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp 135 (358)
.+...+|.|+|+|.+|+.++..|+..|. ++.++|++.-....+..+ |...+....+.+. +.++-+...+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 211 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ 211 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 4566899999999999999999999997 688898863222212111 1111111122221 1333333332
Q ss_pred ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303 136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 192 (358)
..- ....+ .+ .++.-.+|||++-. ......+.+.+.+.++.++.+.+.+
T Consensus 212 ~~~-~~~~~---~~---~~~~~D~Vv~~~d~-~~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 212 ERV-TSDNV---EA---LLQDVDVVVDGADN-FPTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred ccC-ChHHH---HH---HHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 111 11111 11 12334577776443 3334456677777788777765543
No 387
>PRK06153 hypothetical protein; Provisional
Probab=96.25 E-value=0.012 Score=55.35 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 102 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~ 102 (358)
.+...+|+|||+|..|+.++..|++.|. ++.++|.+
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 4567899999999999999999999996 78888875
No 388
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.22 E-value=0.035 Score=45.88 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=61.6
Q ss_pred CCeEEEEcC--ChhHHHHHHHHHHCCCcEEEEcCCccc--h--hhH-------HhCC--CccCCCHHHHhhcCCEEEEee
Q 018303 70 PGRIGFLGM--GIMGTPMAQNLLKAGCDVTVWNRTKSK--C--DPL-------ISLG--AKYQPSPDEVAASCDVTFAML 134 (358)
Q Consensus 70 ~~~IgIIG~--G~iG~~~a~~l~~~g~~V~~~~~~~~~--~--~~~-------~~~g--~~~~~~~~~~~~~aDivi~~v 134 (358)
+++|++||= +++..+++..++.+|+++.++.+..-. . +.+ .+.| +..+++++++++++|+|..-.
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~~ 81 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTDR 81 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEES
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEcC
Confidence 468999993 899999999999999999988875521 1 111 1123 466789999999999998877
Q ss_pred CCh---hhHhhhh-----cc-cccccccCCCCCEEEEcc
Q 018303 135 ADP---ESAMDVA-----CG-KHGAASGMGPGKGYVDVS 164 (358)
Q Consensus 135 p~~---~~~~~~~-----~~-~~~~~~~l~~~~~vi~~s 164 (358)
--+ .+-..-+ |. +.++++..+++.+|.++.
T Consensus 82 ~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 82 WQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred cccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 431 1111100 11 355555666777777763
No 389
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.18 E-value=0.035 Score=54.18 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=64.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhC-CCc-cCCCHHHHhhcCCEEEEeeCC---hhhHhhhh
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAK-YQPSPDEVAASCDVTFAMLAD---PESAMDVA 144 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~~aDivi~~vp~---~~~~~~~~ 144 (358)
+++|+|+|+|.-|.+.++.|.. |.+|+++|..+.....+.+. ... ......+.+.++|+||..-.- .+.....-
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a~ 84 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIAK 84 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHHH
Confidence 4689999999999999999995 99999999654432222211 111 111223456789988776421 22222211
Q ss_pred ------cccccccccCCCC-CEEEEc-cCCChhHHHHHHHHHHhcCCe
Q 018303 145 ------CGKHGAASGMGPG-KGYVDV-STVDGDTSKLINGHIKATGAS 184 (358)
Q Consensus 145 ------~~~~~~~~~l~~~-~~vi~~-s~~~~~~~~~l~~~l~~~~~~ 184 (358)
.++-+++....+. .+|--+ +.|+..+..-+...|...|..
T Consensus 85 ~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~ 132 (454)
T PRK01368 85 NFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLD 132 (454)
T ss_pred HCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCC
Confidence 1122332222222 333333 556677777777778775543
No 390
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.18 E-value=0.012 Score=55.84 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=44.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchh-hHHhCCC-ccCCC---HHHHhhcCCEEEE
Q 018303 70 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGA-KYQPS---PDEVAASCDVTFA 132 (358)
Q Consensus 70 ~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-~~~~~g~-~~~~~---~~~~~~~aDivi~ 132 (358)
+++|||||.|..|+.++..+.+.|++|+++|.+++... .+.+.-+ ....| +.++++.||+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 36899999999999999999999999999998765422 2222111 11233 4567788998754
No 391
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.17 E-value=0.021 Score=51.13 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=57.9
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHh-hcCCEEEEeeCChhhHhhhh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~vp~~~~~~~~~ 144 (358)
...++++.|-|+ +.||..+|+.|++.|++|++..|+.++++.++++ +++.- -+++++-+=+..+.....+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~-------l~~~~~v~v~vi~~DLs~~~~~~~l~ 75 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKE-------LEDKTGVEVEVIPADLSDPEALERLE 75 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHH-------HHHhhCceEEEEECcCCChhHHHHHH
Confidence 345668888898 9999999999999999999999999888776542 22211 12333333333445555555
Q ss_pred cccccccccCCCCCEEEEccC
Q 018303 145 CGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi~~s~ 165 (358)
.++.....+=.++||.+.
T Consensus 76 ---~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 76 ---DELKERGGPIDVLVNNAG 93 (265)
T ss_pred ---HHHHhcCCcccEEEECCC
Confidence 444333233456777643
No 392
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.13 E-value=0.011 Score=53.57 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=44.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~ 144 (358)
.+++|||+|+|.+|..=.+...++|++|++.|++..+.+.+.+ . + .+|..+...-++..++++.
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~----------~-L-GAd~fv~~~~d~d~~~~~~ 244 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIK----------S-L-GADVFVDSTEDPDIMKAIM 244 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHH----------h-c-CcceeEEecCCHHHHHHHH
Confidence 6789999999999988888888899999999998644433222 0 1 3566666664444444443
No 393
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=96.08 E-value=0.014 Score=53.47 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=44.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CcEEEEcCCccchhhHH----hC------CCccCC-CHHHHhhcCCEEEEee
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLI----SL------GAKYQP-SPDEVAASCDVTFAML 134 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~----~~------g~~~~~-~~~~~~~~aDivi~~v 134 (358)
+||+|||+|++|+++|..|...+ -++.++|+..++.+-.. +. ...... ...+.++++|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 48999999999999999996544 48999999855433211 10 112222 1245678999999998
No 394
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.06 E-value=0.014 Score=54.44 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=55.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHH-CCCc---EEEEcCCccchhhH--HhCCCccC-CCHHHHhhcCCEEEEeeCChhhHh
Q 018303 70 PGRIGFLGM-GIMGTPMAQNLLK-AGCD---VTVWNRTKSKCDPL--ISLGAKYQ-PSPDEVAASCDVTFAMLADPESAM 141 (358)
Q Consensus 70 ~~~IgIIG~-G~iG~~~a~~l~~-~g~~---V~~~~~~~~~~~~~--~~~g~~~~-~~~~~~~~~aDivi~~vp~~~~~~ 141 (358)
.++|||||+ |..|+.+.+.|.. ..++ +..+......-+.+ ........ .+.++ ++++|++++|+| ....+
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~-~~~s~ 82 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAG-GEVSR 82 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCC-hHHHH
Confidence 368999998 9999999999995 6666 44333221111111 11112211 13444 478999999997 44555
Q ss_pred hhhcccccccccCCCCCEEEEccCC
Q 018303 142 DVACGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
.+. +.+ .+.|..+||.|..
T Consensus 83 ~~~---~~~---~~~G~~VID~Ss~ 101 (347)
T PRK06728 83 QFV---NQA---VSSGAIVIDNTSE 101 (347)
T ss_pred HHH---HHH---HHCCCEEEECchh
Confidence 555 332 3578999999753
No 395
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.04 E-value=0.03 Score=50.24 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=35.9
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
+++++++-|.|. |.||+.+++.|.+.|++|++.+|+.+..+.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAV 46 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 456678989976 9999999999999999999999987654443
No 396
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.03 E-value=0.015 Score=54.15 Aligned_cols=90 Identities=19% Similarity=0.212 Sum_probs=55.4
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHCCC---cEEEEcCCccchhhH--HhCCCccCCCHHHH-hhcCCEEEEeeCChhhHh
Q 018303 69 LPGRIGFLGM-GIMGTPMAQNLLKAGC---DVTVWNRTKSKCDPL--ISLGAKYQPSPDEV-AASCDVTFAMLADPESAM 141 (358)
Q Consensus 69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~---~V~~~~~~~~~~~~~--~~~g~~~~~~~~~~-~~~aDivi~~vp~~~~~~ 141 (358)
..++|+|||+ |..|..+.+.|....| ++.........-+.+ ......+. ++++. +.++|++++|+|. ....
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~-~~s~ 80 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGR-EASA 80 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCH-HHHH
Confidence 4569999998 9999999999998433 454443222211111 11112222 34443 2689999999974 4444
Q ss_pred hhhcccccccccCCCCCEEEEccCC
Q 018303 142 DVACGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
.+. +++ .+.|..|||.|..
T Consensus 81 ~~~---~~~---~~~g~~VIDlS~~ 99 (336)
T PRK08040 81 AYA---EEA---TNAGCLVIDSSGL 99 (336)
T ss_pred HHH---HHH---HHCCCEEEECChH
Confidence 554 333 3468999999853
No 397
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=96.03 E-value=0.021 Score=50.79 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=46.4
Q ss_pred cCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhh-cCCEEEEeeCC
Q 018303 77 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLAD 136 (358)
Q Consensus 77 G~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~vp~ 136 (358)
|.|-||+.+..+|.+.||+|++..|++.+.+......+...+.+++... .+|+||.-.-.
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~ 66 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGE 66 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCC
Confidence 7899999999999999999999999988766544333333445556655 69999987754
No 398
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=96.02 E-value=0.0067 Score=49.51 Aligned_cols=92 Identities=12% Similarity=0.148 Sum_probs=58.2
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
...+++|++||+ +. .+++.+...+.++.++|++++..... .+.....+.++++++||+|++.- +.-+.+-+
T Consensus 8 ~~~~~~V~~VG~--f~-P~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTG--sTlvN~Ti-- 78 (147)
T PF04016_consen 8 IGPGDKVGMVGY--FQ-PLVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITG--STLVNGTI-- 78 (147)
T ss_dssp TTTTSEEEEES----H-CCHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEEC--HHCCTTTH--
T ss_pred hcCCCEEEEEcC--cH-HHHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEe--eeeecCCH--
Confidence 345679999996 11 26777877889999999998653321 11224457788999999999887 33333444
Q ss_pred cccccccCCCCCEEEEccCCCh
Q 018303 147 KHGAASGMGPGKGYVDVSTVDG 168 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~~~ 168 (358)
++++...++++.++-.+...+
T Consensus 79 -~~iL~~~~~~~~vil~GpS~~ 99 (147)
T PF04016_consen 79 -DDILELARNAREVILYGPSAP 99 (147)
T ss_dssp -HHHHHHTTTSSEEEEESCCGG
T ss_pred -HHHHHhCccCCeEEEEecCch
Confidence 555666666776666655444
No 399
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=95.98 E-value=0.017 Score=54.12 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=53.0
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCC-CcEEEE-cCCccchhhHHhC-------CC-------ccCCCHHHHhhcCCEEEEe
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAG-CDVTVW-NRTKSKCDPLISL-------GA-------KYQPSPDEVAASCDVTFAM 133 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g-~~V~~~-~~~~~~~~~~~~~-------g~-------~~~~~~~~~~~~aDivi~~ 133 (358)
++|+|+|+ |.+|+.+++.+.... +++... ++.....+.+.+. +. .+.....+...++|+|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 47999996 999999999998865 677655 4433221211110 00 1101112345789999999
Q ss_pred eCChhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303 134 LADPESAMDVACGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 134 vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
+|.. ....+. +.+ ...|..+|+.|..
T Consensus 81 ~p~~-~s~~~~---~~~---~~~G~~VIDlsg~ 106 (341)
T TIGR00978 81 LPSE-VAEEVE---PKL---AEAGKPVFSNASN 106 (341)
T ss_pred CCHH-HHHHHH---HHH---HHCCCEEEECChh
Confidence 9844 334443 222 3467788887654
No 400
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=95.97 E-value=0.011 Score=59.05 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 102 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~ 102 (358)
+...+|.|+|+|.+|..+|+.|++.|. +++++|.+
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 456799999999999999999999996 57777653
No 401
>PRK08223 hypothetical protein; Validated
Probab=95.93 E-value=0.05 Score=49.31 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 103 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~ 103 (358)
.+...+|.|||+|.+|+.++..|+..|. ++.++|.+.
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3566799999999999999999999996 688888754
No 402
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=95.93 E-value=0.028 Score=49.61 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=76.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCC---CcEEEEcCCccchhhHHhC----------CCccCCCHHHHhhcCCEEEEeeCChh
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLISL----------GAKYQPSPDEVAASCDVTFAMLADPE 138 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g---~~V~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~aDivi~~vp~~~ 138 (358)
.+.|+|.|..+-.......+.- .+|.+|+|+++.++.+++. .+....++++++..+|||+.|++
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atl--- 216 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATL--- 216 (333)
T ss_pred EEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccc---
Confidence 5788999999998888776543 4799999998877766541 23456788999999999999996
Q ss_pred hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecC
Q 018303 139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 188 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~ 188 (358)
.++.++| ..+++||+++=-++.-.|..- +..+.+-+....|+|.
T Consensus 217 stePilf-----gewlkpgthIdlVGsf~p~mh-EcDdelIq~a~vfVDs 260 (333)
T KOG3007|consen 217 STEPILF-----GEWLKPGTHIDLVGSFKPVMH-ECDDELIQSACVFVDS 260 (333)
T ss_pred cCCceee-----eeeecCCceEeeeccCCchHH-HHhHHHhhhheEEEec
Confidence 4666774 357899987665566556543 3333343445567664
No 403
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.93 E-value=0.018 Score=57.14 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=35.1
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
.+++|.|.|. |.||+.+++.|.+.|++|.+++|+.++.+.+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l 120 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESL 120 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 4578888876 9999999999999999999999988765443
No 404
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.92 E-value=0.035 Score=49.22 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=29.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCC-----------CcEEEEcCCc
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAG-----------CDVTVWNRTK 103 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g-----------~~V~~~~~~~ 103 (358)
+..+|.|||+|.+|+.+++.|+..| .+++++|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 3468999999999999999999863 2788888753
No 405
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.90 E-value=0.028 Score=52.94 Aligned_cols=88 Identities=19% Similarity=0.308 Sum_probs=54.0
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCC-CcEEEEcCCccchh-hHHh---C-----------CCcc-CCCHHHHhhcCCEEEE
Q 018303 71 GRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCD-PLIS---L-----------GAKY-QPSPDEVAASCDVTFA 132 (358)
Q Consensus 71 ~~IgIIG-~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~-~~~~---~-----------g~~~-~~~~~~~~~~aDivi~ 132 (358)
++|+|+| .|.+|+.+.+.|.... +++.++.++..... .+.. . ...+ ..+.++ +.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence 6899998 7999999999998764 47777644432221 1110 0 0111 123444 478999999
Q ss_pred eeCChhhHhhhhcccccccccCCCCCEEEEccCC
Q 018303 133 MLADPESAMDVACGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 133 ~vp~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
++|.. ....+. +.+ ...|..+|+.+..
T Consensus 83 a~p~~-~s~~~~---~~~---~~~G~~vIDls~~ 109 (349)
T PRK08664 83 ALPSD-VAGEVE---EEF---AKAGKPVFSNASA 109 (349)
T ss_pred eCChh-HHHHHH---HHH---HHCCCEEEECCch
Confidence 99853 334443 222 2467778888754
No 406
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.88 E-value=0.068 Score=45.99 Aligned_cols=119 Identities=14% Similarity=0.199 Sum_probs=66.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC----------CCccCCCHHHHhh--cCCEEEEe
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL----------GAKYQPSPDEVAA--SCDVTFAM 133 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~--~aDivi~~ 133 (358)
.++..+|.|||+|.+|..+++.|...|. +++++|.+.-....+..+ |...+....+.++ +.|+-+..
T Consensus 16 ~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~ 95 (198)
T cd01485 16 KLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI 95 (198)
T ss_pred HHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence 3455799999999999999999999996 588888763222212111 1111111111111 24555555
Q ss_pred eCChhh-HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCC
Q 018303 134 LADPES-AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 192 (358)
Q Consensus 134 vp~~~~-~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 192 (358)
.+.... ..... .++ +++-.+||++ .........+.+.+.+.++.++.+...+
T Consensus 96 ~~~~~~~~~~~~---~~~---~~~~dvVi~~-~d~~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 96 VEEDSLSNDSNI---EEY---LQKFTLVIAT-EENYERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred EecccccchhhH---HHH---HhCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 432211 01111 222 2334567766 4445555677788888888777765443
No 407
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.86 E-value=0.017 Score=54.53 Aligned_cols=37 Identities=22% Similarity=0.454 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCc
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 103 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~ 103 (358)
.+...+|.|||+|.+|+.++..|+..|. ++.++|.+.
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3556799999999999999999999996 688888764
No 408
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.86 E-value=0.21 Score=45.00 Aligned_cols=145 Identities=11% Similarity=0.018 Sum_probs=76.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCC-CcEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLA 135 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp 135 (358)
.+...+|.|+|+|.+|+.+|..|+..| .+++++|.+.-....+..+ |-..+.-..+-+. +.++-+...+
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~ 106 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD 106 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence 456679999999999999999999999 5788888764322222111 1000111112121 2344344443
Q ss_pred ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEec-----CCH
Q 018303 136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA-----GDK 210 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~ 210 (358)
..- +..-+ .+++ ...-.+||++.- .+.....+.+.+.+.++.++...=.++. ..+.-+-++ ...
T Consensus 107 ~~i-~~e~~---~~ll--~~~~D~VIdaiD-~~~~k~~L~~~c~~~~ip~I~~gGag~k----~dp~~~~~~di~~t~~~ 175 (268)
T PRK15116 107 DFI-TPDNV---AEYM--SAGFSYVIDAID-SVRPKAALIAYCRRNKIPLVTTGGAGGQ----IDPTQIQVVDLAKTIQD 175 (268)
T ss_pred ccc-ChhhH---HHHh--cCCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEECCcccC----CCCCeEEEEeeecccCC
Confidence 211 11111 1111 112356776643 4444557888888888887765322221 111112222 134
Q ss_pred hHHHHHHHHHHH
Q 018303 211 SLYNTVAPLLDI 222 (358)
Q Consensus 211 ~~~~~v~~ll~~ 222 (358)
.....++..|+.
T Consensus 176 pla~~~R~~lr~ 187 (268)
T PRK15116 176 PLAAKLRERLKS 187 (268)
T ss_pred hHHHHHHHHHHH
Confidence 466778888876
No 409
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.85 E-value=0.042 Score=51.48 Aligned_cols=90 Identities=11% Similarity=0.079 Sum_probs=64.0
Q ss_pred CCCCeEEEEcCC----------hhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCCh
Q 018303 68 ELPGRIGFLGMG----------IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP 137 (358)
Q Consensus 68 ~~~~~IgIIG~G----------~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~ 137 (358)
+.+++|||+|+- .-...++.+|.+.|.+|.+||+-...-......++...+++.++++.||++++++ .-
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~t-ew 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINT-EW 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEec-cH
Confidence 677899999974 3467889999999999999998543221111114678889999999999999999 56
Q ss_pred hhHhhhhcccccccccCCCCCEEEEc
Q 018303 138 ESAMDVACGKHGAASGMGPGKGYVDV 163 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~~~vi~~ 163 (358)
.+.+.+- -+.. +.++.+|+|-
T Consensus 387 ~ef~~~d---~~~~--~m~~~~v~Dg 407 (414)
T COG1004 387 DEFRDLD---FEKL--LMKTPVVIDG 407 (414)
T ss_pred HHHhccC---hhhh--hccCCEEEec
Confidence 6666654 2222 3355666653
No 410
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.85 E-value=0.037 Score=50.71 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
.+.+++|-|.|. |.||..+++.|++.|++|++.+|+.+..+.+
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~ 80 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV 80 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 455678999976 9999999999999999999999987655443
No 411
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.84 E-value=0.041 Score=56.18 Aligned_cols=37 Identities=27% Similarity=0.457 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 104 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~ 104 (358)
..+++|.|||.|..|...|..|+..|++|+++++.+.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 3578999999999999999999999999999998753
No 412
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.82 E-value=0.03 Score=57.37 Aligned_cols=37 Identities=30% Similarity=0.501 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 104 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~ 104 (358)
..+++|.|||.|..|...|..|+..|++|+++++.+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3568999999999999999999999999999998643
No 413
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.82 E-value=0.066 Score=52.07 Aligned_cols=112 Identities=16% Similarity=0.093 Sum_probs=65.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--CCcEEEEcCCccch--hhHHhCCCccC-C-CHHHHhhcCCEEEEeeCC---hhhHh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKC--DPLISLGAKYQ-P-SPDEVAASCDVTFAMLAD---PESAM 141 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~--g~~V~~~~~~~~~~--~~~~~~g~~~~-~-~~~~~~~~aDivi~~vp~---~~~~~ 141 (358)
++|.|||.|..|.+.++.|... |++|.++|..+... +.+.+ |+... . ...+.+.++|+||..--- .+...
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~ 86 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQ 86 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHH
Confidence 5899999999999999999887 58899999754321 23432 55442 1 123445789988776522 22222
Q ss_pred hhh------cccccccccCCCCCEEEEc-cCCChhHHHHHHHHHHhcCC
Q 018303 142 DVA------CGKHGAASGMGPGKGYVDV-STVDGDTSKLINGHIKATGA 183 (358)
Q Consensus 142 ~~~------~~~~~~~~~l~~~~~vi~~-s~~~~~~~~~l~~~l~~~~~ 183 (358)
... .+..+++..+.+..+|--+ +.|+..+..-+...|...+.
T Consensus 87 ~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~ 135 (438)
T PRK04663 87 QVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGV 135 (438)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCC
Confidence 211 1112333322233333333 55667777777777776554
No 414
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.81 E-value=0.032 Score=49.44 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=34.3
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccch
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC 106 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~ 106 (358)
.++++++-|.|. |.||..+++.|.+.|++|++.+|+++..
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~ 43 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGA 43 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 355678999987 9999999999999999999999976543
No 415
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.81 E-value=0.035 Score=49.09 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=35.0
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 108 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~ 108 (358)
.+.++++.|.|. |.||..+++.|.+.|++|.+.+|++++.+.
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARE 46 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 345678999986 999999999999999999999988765443
No 416
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.80 E-value=0.02 Score=41.27 Aligned_cols=35 Identities=29% Similarity=0.493 Sum_probs=31.8
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC 106 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~ 106 (358)
+|.|||.|.+|..+|..|+..|.+|+++.+++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58899999999999999999999999999876544
No 417
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.79 E-value=0.025 Score=50.51 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=34.8
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 107 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~ 107 (358)
...+|+|.|+|+ |.+|+.+++.|...|++|++..|++++..
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 55 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK 55 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 345689999995 99999999999999999999988876543
No 418
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.79 E-value=0.039 Score=51.44 Aligned_cols=90 Identities=20% Similarity=0.215 Sum_probs=61.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHH-HhhcCCEEEEeeCChhhHhhhhccc
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDE-VAASCDVTFAMLADPESAMDVACGK 147 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~aDivi~~vp~~~~~~~~~~~~ 147 (358)
.+.+|.|.|.|.+|...++.++..|.+|++.++++++.+.+.+.|+..+-+..+ .-+..|+++.+..... .+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~----~~--- 237 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGG----LV--- 237 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHH----HH---
Confidence 457899999999999999888889999999999888887777777644322111 1124677777664332 23
Q ss_pred ccccccCCCCCEEEEccC
Q 018303 148 HGAASGMGPGKGYVDVST 165 (358)
Q Consensus 148 ~~~~~~l~~~~~vi~~s~ 165 (358)
...++.++++..++..+.
T Consensus 238 ~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 238 PPALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHHHhhCCCcEEEEEec
Confidence 334466777777776543
No 419
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.79 E-value=0.064 Score=52.36 Aligned_cols=112 Identities=20% Similarity=0.243 Sum_probs=68.6
Q ss_pred eEEEEcCChhHHH-HHHHHHHCCCcEEEEcCCcc-chhhHHhCCCccCC-CHHHHhhcCCEEEEee--CC-hhhHhhhh-
Q 018303 72 RIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQP-SPDEVAASCDVTFAML--AD-PESAMDVA- 144 (358)
Q Consensus 72 ~IgIIG~G~iG~~-~a~~l~~~g~~V~~~~~~~~-~~~~~~~~g~~~~~-~~~~~~~~aDivi~~v--p~-~~~~~~~~- 144 (358)
+|-|||.|..|.+ +|+.|++.|++|.++|.+.. ..+.+.+.|+.... ...+.++++|+||..- |. .+......
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 3789999999998 99999999999999997543 22335555665432 2234566799888764 21 22232221
Q ss_pred -----cccccccccC-CCCCEE-EEccCCChhHHHHHHHHHHhcCC
Q 018303 145 -----CGKHGAASGM-GPGKGY-VDVSTVDGDTSKLINGHIKATGA 183 (358)
Q Consensus 145 -----~~~~~~~~~l-~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~ 183 (358)
.+..+++..+ ++..+| |--+.|+..+..-+...|...+.
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 1122333222 222333 33356777777777788877664
No 420
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.75 E-value=0.053 Score=49.86 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=53.2
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCc---EEEE--cCCccch-hhHHhCCCccCC--CHHHHhhcCCEEEEeeCChhhHh
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGCD---VTVW--NRTKSKC-DPLISLGAKYQP--SPDEVAASCDVTFAMLADPESAM 141 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~~---V~~~--~~~~~~~-~~~~~~g~~~~~--~~~~~~~~aDivi~~vp~~~~~~ 141 (358)
++|||+|+ |.+|+.+.+.|.+..+. +.++ .|+..+. ..+.......-. ......+++|+++.|.|. ...+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~-~~s~ 80 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGG-SVSK 80 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCch-HHHH
Confidence 58999976 99999999999985543 2232 3332221 122221112111 112335589999999974 3445
Q ss_pred hhhcccccccccCCCCCEEEEccCC
Q 018303 142 DVACGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
.+. +++ .+.|.++||.++.
T Consensus 81 ~~~---p~~---~~~G~~VIdnsSa 99 (334)
T COG0136 81 EVE---PKA---AEAGCVVIDNSSA 99 (334)
T ss_pred HHH---HHH---HHcCCEEEeCCcc
Confidence 555 333 4578889988664
No 421
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.75 E-value=0.058 Score=48.04 Aligned_cols=92 Identities=26% Similarity=0.281 Sum_probs=59.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccC-----CCHHHH-----hhcCCEEEEeeCCh
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ-----PSPDEV-----AASCDVTFAMLADP 137 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~-----~~~~~~-----~~~aDivi~~vp~~ 137 (358)
..+.+|.|.|.|.+|..+++.++..|.+|++.++++++.+.+.+.+.... .+..+. -...|+++.+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 34578999999999999999999999999999998776665554432111 011111 13478888777532
Q ss_pred hhHhhhhcccccccccCCCCCEEEEccCC
Q 018303 138 ESAMDVACGKHGAASGMGPGKGYVDVSTV 166 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~ 166 (358)
...... +..++++..+++.+..
T Consensus 213 ~~~~~~-------~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 213 ETLAQA-------LRLLRPGGRIVVVGGT 234 (271)
T ss_pred HHHHHH-------HHhcccCCEEEEEccC
Confidence 232222 3456677777766544
No 422
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.74 E-value=0.036 Score=51.77 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=36.2
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
.+.++++.|.|+ |.||..+++.|++.|++|++.+|++++.+.+
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~ 47 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAV 47 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 455678989987 8999999999999999999999987665443
No 423
>PRK07478 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.04 Score=49.05 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=35.3
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
++.++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.+
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~ 46 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQL 46 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 345678888876 8999999999999999999999987655443
No 424
>PRK05867 short chain dehydrogenase; Provisional
Probab=95.71 E-value=0.037 Score=49.28 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=35.8
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
.+.++++-|.|. |.||..+++.|.+.|++|.+.+|+.++.+.+
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 49 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKL 49 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 355678989987 8999999999999999999999987655443
No 425
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.70 E-value=0.043 Score=50.61 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=53.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhccc
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 147 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~ 147 (358)
.+.++.|+|+|.+|...++.++..|.+ |.+.++++++.+...... ..+..++.-...|+|+-++.........+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~~~~~~~~--- 218 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDPSLIDTLV--- 218 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCHHHHHHHH---
Confidence 456899999999999999999999987 556777665544332211 11111111234688888875333333333
Q ss_pred ccccccCCCCCEEEEcc
Q 018303 148 HGAASGMGPGKGYVDVS 164 (358)
Q Consensus 148 ~~~~~~l~~~~~vi~~s 164 (358)
+.++++..++.++
T Consensus 219 ----~~l~~~G~iv~~G 231 (308)
T TIGR01202 219 ----RRLAKGGEIVLAG 231 (308)
T ss_pred ----HhhhcCcEEEEEe
Confidence 4566777666654
No 426
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.69 E-value=0.088 Score=51.17 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=66.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch--hhHHhCCCccCC--CHHHHhhcCCEEEEeeCCh---hhH
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC--DPLISLGAKYQP--SPDEVAASCDVTFAMLADP---ESA 140 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~--~~~~~~g~~~~~--~~~~~~~~aDivi~~vp~~---~~~ 140 (358)
..+++|.|||.|..|.+.++.|++.|++|.++|..+... +.+. .|+.... ...+.++..|+||..-.-+ +..
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASPGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHH
Confidence 345789999999999999999999999999999754321 2232 2544321 2234466788766554221 222
Q ss_pred hhhh------cccccccccCCCCCEE-EEccCCChhHHHHHHHHHHhcCC
Q 018303 141 MDVA------CGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGA 183 (358)
Q Consensus 141 ~~~~------~~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~ 183 (358)
.... ....+++..+.+..+| |--+.|...+..-+...|...+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~ 132 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGW 132 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 2111 0111233222222333 33356677777777777876543
No 427
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.69 E-value=0.075 Score=52.00 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=64.8
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc-h----hhHHhCCCccCC--CHH-----HHhhcCCEEEEeeCChh-
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-C----DPLISLGAKYQP--SPD-----EVAASCDVTFAMLADPE- 138 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~-~----~~~~~~g~~~~~--~~~-----~~~~~aDivi~~vp~~~- 138 (358)
+|.|||.|..|.+.|+.|...|++|.++|+.+.. . +.+...|+.... ..+ +.+.+.|.|+....-++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 6899999999999999999999999999986532 1 124444554421 111 35678998888543222
Q ss_pred --hHhhhh------ccccccc-ccCCCCCEEEEc-cCCChhHHHHHHHHHHhcC
Q 018303 139 --SAMDVA------CGKHGAA-SGMGPGKGYVDV-STVDGDTSKLINGHIKATG 182 (358)
Q Consensus 139 --~~~~~~------~~~~~~~-~~l~~~~~vi~~-s~~~~~~~~~l~~~l~~~~ 182 (358)
.....- .+..+++ ..+.+..+|--+ +.|...+..-+...|...+
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g 135 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAG 135 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 221111 0111121 222233333333 5566666766677776654
No 428
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.67 E-value=0.048 Score=48.56 Aligned_cols=42 Identities=21% Similarity=0.156 Sum_probs=35.5
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 108 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~ 108 (358)
.+++++|.|.|. |.||+.+++.|.+.|++|++++|+++..+.
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~ 50 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEA 50 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 466789999976 999999999999999999999998755443
No 429
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.66 E-value=0.044 Score=48.84 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=35.0
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 107 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~ 107 (358)
.+.+++|.|.|. |.+|..+++.|.+.|++|.+.+|++++.+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~ 48 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLA 48 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 356689999976 99999999999999999999999876543
No 430
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.66 E-value=0.071 Score=51.19 Aligned_cols=107 Identities=10% Similarity=0.080 Sum_probs=63.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHh--hcCCEEEEee--CCh-hhH---hh
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA--ASCDVTFAML--ADP-ESA---MD 142 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~aDivi~~v--p~~-~~~---~~ 142 (358)
|+|.|+|+|.-|.++|+.|. .|.+|.++|..+.... ..+.|+... . ++.. +++|+||..- |.+ +.. +.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 57999999999999999999 9999999996543221 223355442 2 2333 4689877652 322 222 12
Q ss_pred hhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcC
Q 018303 143 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG 182 (358)
Q Consensus 143 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~ 182 (358)
++ +..+++..+.+..+-|--+.|+..+..-+...|...+
T Consensus 77 i~-~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g 115 (401)
T PRK03815 77 LI-SEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFG 115 (401)
T ss_pred Hh-hHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCC
Confidence 22 1122322222223334335667777777777777654
No 431
>PRK07576 short chain dehydrogenase; Provisional
Probab=95.62 E-value=0.051 Score=48.83 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=35.2
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 107 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~ 107 (358)
++.+++|.|.|. |.||..+++.|.+.|++|++.+|+++..+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~ 47 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVD 47 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 456779999977 89999999999999999999999866543
No 432
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.62 E-value=0.042 Score=48.43 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=33.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303 70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 108 (358)
Q Consensus 70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~ 108 (358)
++++.|.|. |.+|..+++.|.+.|++|++.+|++++.+.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 45 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEA 45 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 467888875 999999999999999999999998765443
No 433
>PRK07411 hypothetical protein; Validated
Probab=95.56 E-value=0.029 Score=53.55 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=30.8
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 102 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~ 102 (358)
.+...+|.|||+|.+|..++..|+..|. +++++|.+
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3556799999999999999999999996 57778765
No 434
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=95.55 E-value=0.065 Score=48.01 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=52.6
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcc
Q 018303 68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~ 146 (358)
+.++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.+.+. +-....++..-+......+.++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~~-- 71 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQR----------FGDHVLVVEGDVTSYADNQRAV-- 71 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------hCCcceEEEccCCCHHHHHHHH--
Confidence 45678888876 7899999999999999999999987665444321 0011223333333344555555
Q ss_pred cccccccCCCCCEEEEccC
Q 018303 147 KHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~ 165 (358)
+++.+...+=.++||...
T Consensus 72 -~~~~~~~g~id~li~~ag 89 (263)
T PRK06200 72 -DQTVDAFGKLDCFVGNAG 89 (263)
T ss_pred -HHHHHhcCCCCEEEECCC
Confidence 444443333456676654
No 435
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.54 E-value=0.05 Score=54.65 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=48.3
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchh-hHHhCCC-ccCCC---HHHHhhcCCEEEEeeC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGA-KYQPS---PDEVAASCDVTFAMLA 135 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-~~~~~g~-~~~~~---~~~~~~~aDivi~~vp 135 (358)
....++|||||.|..|+.++..+.+.|++|.++|.+++... .+.+.-+ ..+.| +.++++++|+|.....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 35668999999999999999999999999999998765321 1111111 11234 3455678999876543
No 436
>PLN02427 UDP-apiose/xylose synthase
Probab=95.54 E-value=0.034 Score=53.07 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=47.1
Q ss_pred CCCCCeEEEEc-CChhHHHHHHHHHHC-CCcEEEEcCCccchhhHHhC-------CCc-------cCCCHHHHhhcCCEE
Q 018303 67 DELPGRIGFLG-MGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISL-------GAK-------YQPSPDEVAASCDVT 130 (358)
Q Consensus 67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~-g~~V~~~~~~~~~~~~~~~~-------g~~-------~~~~~~~~~~~aDiv 130 (358)
..+.|+|.|.| +|-||+.+++.|.+. |++|.+.+|+..+...+... ++. -..++.++++++|+|
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V 90 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT 90 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence 45668999997 599999999999987 59999999876544332211 111 112345667789988
Q ss_pred EEee
Q 018303 131 FAML 134 (358)
Q Consensus 131 i~~v 134 (358)
|-+.
T Consensus 91 iHlA 94 (386)
T PLN02427 91 INLA 94 (386)
T ss_pred EEcc
Confidence 7665
No 437
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.54 E-value=0.05 Score=50.26 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=45.7
Q ss_pred CCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhHH---hC-----C-------CccCCCHHHHhhcCCEEEEe
Q 018303 70 PGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI---SL-----G-------AKYQPSPDEVAASCDVTFAM 133 (358)
Q Consensus 70 ~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~---~~-----g-------~~~~~~~~~~~~~aDivi~~ 133 (358)
+++|.|.| +|.||+.+++.|.+.|++|.+.+|+........ .. . +.-..+.+++++++|+||-+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 83 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHT 83 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEe
Confidence 46899998 699999999999999999999888765422111 00 1 11122455677788888776
Q ss_pred eC
Q 018303 134 LA 135 (358)
Q Consensus 134 vp 135 (358)
..
T Consensus 84 A~ 85 (322)
T PLN02662 84 AS 85 (322)
T ss_pred CC
Confidence 63
No 438
>PRK08589 short chain dehydrogenase; Validated
Probab=95.53 E-value=0.06 Score=48.61 Aligned_cols=39 Identities=15% Similarity=0.025 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccch
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC 106 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~ 106 (358)
.+.++++-|.|. |.||..+++.|.+.|++|++.+|+ +..
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~ 42 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAV 42 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHH
Confidence 355678888877 899999999999999999999997 443
No 439
>PRK05876 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.044 Score=49.69 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=34.3
Q ss_pred CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303 67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD 107 (358)
Q Consensus 67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~ 107 (358)
++.++++-|.| .|.||+.+++.|++.|++|++.+|+.+..+
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~ 44 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLR 44 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45667888886 589999999999999999999999865544
No 440
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.53 E-value=0.072 Score=51.35 Aligned_cols=90 Identities=14% Similarity=0.119 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcC----------ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCC
Q 018303 67 DELPGRIGFLGM----------GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLAD 136 (358)
Q Consensus 67 ~~~~~~IgIIG~----------G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~ 136 (358)
.+.+++|+|+|+ ..-...+++.|.+.|.+|.+||+...... ... .....++.++++++|.|+++++.
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-~~~--~~~~~~~~~~~~~ad~~v~~t~~ 386 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-VKG--LPLIDDLEEALKGADALVILTDH 386 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-hhh--cccCCCHHHHHhCCCEEEEecCC
Confidence 357789999998 34678999999999999999998754322 111 22246888999999999999964
Q ss_pred hhhHhhhhcccccccccCCCCCEEEEc
Q 018303 137 PESAMDVACGKHGAASGMGPGKGYVDV 163 (358)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~~~~vi~~ 163 (358)
+ +.+.+-+ +.+...|+ ..+++|.
T Consensus 387 ~-~~~~~~~--~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 387 D-EFKDLDL--EKIKDLMK-GKVVVDT 409 (411)
T ss_pred H-HHhccCH--HHHHHhcC-CCEEEeC
Confidence 4 4443310 33333343 4577774
No 441
>PRK05872 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.085 Score=48.34 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEE--EeeCChhhHhhh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTF--AMLADPESAMDV 143 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi--~~vp~~~~~~~~ 143 (358)
.+.++++.|.|. |.||..+++.|.+.|++|++.+|+.++.+.+.+. +-...+++. +-+.+..+++.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~----------l~~~~~~~~~~~Dv~d~~~v~~~ 75 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAE----------LGGDDRVLTVVADVTDLAAMQAA 75 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------hcCCCcEEEEEecCCCHHHHHHH
Confidence 566778999976 8999999999999999999999987655544321 101223333 223334455555
Q ss_pred hcccccccccCCCCCEEEEccC
Q 018303 144 ACGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 144 ~~~~~~~~~~l~~~~~vi~~s~ 165 (358)
+ +++...+.+=.++||...
T Consensus 76 ~---~~~~~~~g~id~vI~nAG 94 (296)
T PRK05872 76 A---EEAVERFGGIDVVVANAG 94 (296)
T ss_pred H---HHHHHHcCCCCEEEECCC
Confidence 5 444444434356666643
No 442
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.51 E-value=0.051 Score=47.77 Aligned_cols=85 Identities=9% Similarity=0.043 Sum_probs=53.4
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEE--eeCChhhHhhhh
Q 018303 68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA--MLADPESAMDVA 144 (358)
Q Consensus 68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~--~vp~~~~~~~~~ 144 (358)
+.++++-|.|. +.||.++++.|++.|++|.+.+|+.++.+...+. ..+. ..+++.. -+....+++.++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~-------i~~~--~~~~~~~~~D~~~~~~~~~~~ 73 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQ-------CSAL--TDNVYSFQLKDFSQESIRHLF 73 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH-------HHhc--CCCeEEEEccCCCHHHHHHHH
Confidence 45678889987 5599999999999999999999987765544321 1110 1223322 233456666666
Q ss_pred cccccccccCC-CCCEEEEcc
Q 018303 145 CGKHGAASGMG-PGKGYVDVS 164 (358)
Q Consensus 145 ~~~~~~~~~l~-~~~~vi~~s 164 (358)
+++.+.+. +=.++||..
T Consensus 74 ---~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 74 ---DAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred ---HHHHHHhCCCCCEEEECC
Confidence 55544443 334677665
No 443
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=95.50 E-value=0.063 Score=50.44 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=37.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCC
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG 113 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g 113 (358)
.+.+|.|+|+|.+|...++.++..|.+|++.++++++.+.+.+.|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~G 210 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFG 210 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC
Confidence 357899999999999999999999999999999887766554444
No 444
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.50 E-value=0.048 Score=57.13 Aligned_cols=70 Identities=29% Similarity=0.357 Sum_probs=54.2
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc------------hh---------hHHhCCCcc--------C
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK------------CD---------PLISLGAKY--------Q 117 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~------------~~---------~~~~~g~~~--------~ 117 (358)
.-++++|+|||.|.-|.+-|..|-+.||.|++|.|+..- .+ .+.++|+.+ .
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence 456789999999999999999999999999999986431 11 122335433 3
Q ss_pred CCHHHHhhcCCEEEEeeCC
Q 018303 118 PSPDEVAASCDVTFAMLAD 136 (358)
Q Consensus 118 ~~~~~~~~~aDivi~~vp~ 136 (358)
.+++++.+.-|.|++|+..
T Consensus 1862 vs~d~l~~~~daiv~a~gs 1880 (2142)
T KOG0399|consen 1862 VSLDELKKENDAIVLATGS 1880 (2142)
T ss_pred ccHHHHhhccCeEEEEeCC
Confidence 4789999999999999854
No 445
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.50 E-value=0.083 Score=47.22 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=70.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCccchhhHHh----CCCccCCCHHHHhh---cCCEEEEeeCChhhH
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLIS----LGAKYQPSPDEVAA---SCDVTFAMLADPESA 140 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~---~aDivi~~vp~~~~~ 140 (358)
.+++|.-||+|. |. ++..++..|.. |+++|.++...+...+ .++. +..++.. ..|+|+... .....
T Consensus 119 ~~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~---~~~~~~~~~~~fD~Vvani-~~~~~ 192 (250)
T PRK00517 119 PGKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE---LNVYLPQGDLKADVIVANI-LANPL 192 (250)
T ss_pred CCCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC---ceEEEccCCCCcCEEEEcC-cHHHH
Confidence 567999999998 74 45556667765 9999999877655433 2321 0001111 478888766 34556
Q ss_pred hhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 141 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
..++ +++...+++|..++-. .......+.+.+.+.+.|...+.
T Consensus 193 ~~l~---~~~~~~LkpgG~lils-gi~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 193 LELA---PDLARLLKPGGRLILS-GILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHH---HHHHHhcCCCcEEEEE-ECcHhhHHHHHHHHHHCCCEEEE
Confidence 6666 7778889999887743 23344556777788777766553
No 446
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.49 E-value=0.052 Score=50.75 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=54.3
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEee--CChhhHhhh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML--ADPESAMDV 143 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~v--p~~~~~~~~ 143 (358)
.+.+++|.|.|. |.||..+++.|.+.|++|++.+|++++.+.+.+. +.+ ..+++.++.+ .+..+++.+
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~-------l~~--~g~~~~~v~~Dv~d~~~v~~~ 75 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAE-------IRA--AGGEALAVVADVADAEAVQAA 75 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHH--cCCcEEEEEecCCCHHHHHHH
Confidence 455678888876 9999999999999999999999987654433221 111 1233433333 234455555
Q ss_pred hcccccccccCCCCCEEEEccC
Q 018303 144 ACGKHGAASGMGPGKGYVDVST 165 (358)
Q Consensus 144 ~~~~~~~~~~l~~~~~vi~~s~ 165 (358)
+ +.+.+.+.+=.++||.+.
T Consensus 76 ~---~~~~~~~g~iD~lInnAg 94 (334)
T PRK07109 76 A---DRAEEELGPIDTWVNNAM 94 (334)
T ss_pred H---HHHHHHCCCCCEEEECCC
Confidence 5 444444444456777654
No 447
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.48 E-value=0.083 Score=49.26 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=38.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCc-EEEEcCCccchhhHHhCCC
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGA 114 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g~ 114 (358)
.+.+|.|+|.|.+|...++.++..|.+ |++.++++++.+.+.+.|+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga 209 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA 209 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 367999999999999999999999998 9999988877666555453
No 448
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.48 E-value=0.023 Score=52.55 Aligned_cols=65 Identities=26% Similarity=0.364 Sum_probs=45.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCc-------cCCCHHHHhhcCCEEEEeeC
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------YQPSPDEVAASCDVTFAMLA 135 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~aDivi~~vp 135 (358)
|+|.|.|. |.+|+.+++.|.+.|++|.+.+|+++....+...++. -..++.++++.+|+|+.+.+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 47889975 9999999999999999999999976653322221221 11234566777888877663
No 449
>PRK06182 short chain dehydrogenase; Validated
Probab=95.47 E-value=0.079 Score=47.76 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=33.8
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
+++|.|.|. |.+|+.+++.|.+.|++|++.+|++++.+.+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~ 43 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDL 43 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 468889985 9999999999999999999999987655433
No 450
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.47 E-value=0.049 Score=48.52 Aligned_cols=40 Identities=25% Similarity=0.271 Sum_probs=33.7
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303 68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 107 (358)
Q Consensus 68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~ 107 (358)
+.+++|.|.|. |.||+.+++.|.+.|++|++.+|+++..+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~ 43 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLD 43 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 34578889975 99999999999999999999999875443
No 451
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.46 E-value=0.049 Score=48.60 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=35.9
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
.+.++++.|.|. |.||..+++.|.+.|++|.+.+|+++..+..
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAV 47 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence 345678999987 9999999999999999999999987654443
No 452
>PRK07060 short chain dehydrogenase; Provisional
Probab=95.45 E-value=0.038 Score=48.76 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=36.2
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
.+.++++.|.|. |.+|..+++.|.+.|++|++++|++++.+.+
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~ 49 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRL 49 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 355679999987 8999999999999999999999987654433
No 453
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=95.43 E-value=0.21 Score=45.72 Aligned_cols=109 Identities=14% Similarity=0.089 Sum_probs=72.9
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCcEE-EEcCCccchhhHHhCCCccCCCHHHHhhc--CCEEEEeeCChhhHhhhhcc
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVACG 146 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~~~~ 146 (358)
.+|.|.|. |..|+...+...+.|-+|. ++++... .+.. .|+..+.++.|+.+. .|+.++++| ...+.+.+
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~-~~~i--~G~~~y~sv~dlp~~~~~DlAvI~vP-a~~v~~al-- 86 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTEH--LGLPVFNTVAEAKAETKANASVIYVP-PPFAAAAI-- 86 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCC-CceE--cCeeccCCHHHHhhccCCCEEEEecC-HHHHHHHH--
Confidence 58999997 9999999999999998866 4665421 1111 367788899998876 799999998 66777777
Q ss_pred cccccccCCCCCEEEEccCCChhH--HHHHHHHHHhcCCeEecC
Q 018303 147 KHGAASGMGPGKGYVDVSTVDGDT--SKLINGHIKATGASFLEA 188 (358)
Q Consensus 147 ~~~~~~~l~~~~~vi~~s~~~~~~--~~~l~~~l~~~~~~~~~~ 188 (358)
++..+.=-+. +|-++.+.+.. ++.+.+..++.++.++..
T Consensus 87 -~e~~~~Gvk~--~vIisaGf~e~g~~~~~~~~ar~~girviGP 127 (300)
T PLN00125 87 -LEAMEAELDL--VVCITEGIPQHDMVRVKAALNRQSKTRLIGP 127 (300)
T ss_pred -HHHHHcCCCE--EEEECCCCCcccHHHHHHHHHhhcCCEEECC
Confidence 5554421122 33335544332 334444466677777764
No 454
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.43 E-value=0.056 Score=47.44 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=33.9
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303 69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 108 (358)
Q Consensus 69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~ 108 (358)
.+++|.|+|. |.+|..+++.|.+.|++|++.+|++++...
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~ 45 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEE 45 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHH
Confidence 4568999975 999999999999999999999998765443
No 455
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.43 E-value=0.025 Score=49.95 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=67.9
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh-----HHh-CCCccCCCHHHHhhcCCEEEEeeCChhh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----LIS-LGAKYQPSPDEVAASCDVTFAMLADPES 139 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~-----~~~-~g~~~~~~~~~~~~~aDivi~~vp~~~~ 139 (358)
++...+++|+|+ |.||..+|+.|+..+......-|+.+..++ +.+ .+.....+++....+.|++|.....+
T Consensus 164 dlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~~-- 241 (351)
T COG5322 164 DLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASMP-- 241 (351)
T ss_pred CHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeecC--
Confidence 667789999998 999999999999988877777766543322 111 13333445555555555555444222
Q ss_pred HhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhc-CCeEecCCC
Q 018303 140 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT-GASFLEAPV 190 (358)
Q Consensus 140 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~-~~~~~~~~~ 190 (358)
....+ + -..+|||.+++|-+.-.-+++ ..++. ++..++...
T Consensus 242 ~g~~I--~---pq~lkpg~~ivD~g~P~dvd~-----~vk~~~~V~Ii~GGl 283 (351)
T COG5322 242 KGVEI--F---PQHLKPGCLIVDGGYPKDVDT-----SVKNVGGVRIIPGGL 283 (351)
T ss_pred CCcee--c---hhhccCCeEEEcCCcCccccc-----ccccCCCeEEecCcc
Confidence 22233 1 235899999998866443332 33333 355555443
No 456
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.42 E-value=0.057 Score=52.97 Aligned_cols=35 Identities=31% Similarity=0.509 Sum_probs=32.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCc
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 103 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~ 103 (358)
.+++|.|||.|..|...|..|+..|++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 56799999999999999999999999999998765
No 457
>PRK06057 short chain dehydrogenase; Provisional
Probab=95.40 E-value=0.095 Score=46.69 Aligned_cols=41 Identities=17% Similarity=0.066 Sum_probs=35.1
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303 68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 108 (358)
Q Consensus 68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~ 108 (358)
+.+++|-|+|. |.||..+++.+.+.|++|++.+|+....+.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~ 46 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKA 46 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 55679999988 999999999999999999999998655443
No 458
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.40 E-value=0.061 Score=47.27 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=34.3
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303 68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 107 (358)
Q Consensus 68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~ 107 (358)
+.+++|.|.|. |.+|..+++.|.+.|++|++.+|++++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~ 43 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAE 43 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHH
Confidence 44578999986 99999999999999999999999876544
No 459
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=95.39 E-value=0.2 Score=40.22 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=67.5
Q ss_pred HHHHHHHHHCCCcEEEEcCCccch----hhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhHhhhhcccccccccCCCCC
Q 018303 83 TPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGK 158 (358)
Q Consensus 83 ~~~a~~l~~~g~~V~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~~~~~~~~~~~~l~~~~ 158 (358)
-..++.|.+.|++|.+=.-..... +...+.|+...++.++++.+||+|+-.-|.+ .+.+..|++|+
T Consensus 17 P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~----------~~e~~~l~~g~ 86 (136)
T PF05222_consen 17 PEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS----------EEELALLKPGQ 86 (136)
T ss_dssp HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-------------GGGGGGS-TTC
T ss_pred HHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC----------HHHHhhcCCCc
Confidence 356778888899999854432221 3345568888888889999999998777532 23346789999
Q ss_pred EEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCC
Q 018303 159 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS 193 (358)
Q Consensus 159 ~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 193 (358)
++|... .+.....+.+.+.++++..++......
T Consensus 87 ~li~~~--~~~~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 87 TLIGFL--HPAQNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EEEEE----GGGHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred EEEEee--ccccCHHHHHHHHHCCCEEEEhhhCcC
Confidence 999554 444567788888889999888765544
No 460
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.39 E-value=0.025 Score=52.46 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=23.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCC----CcEEEEc
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAG----CDVTVWN 100 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g----~~V~~~~ 100 (358)
+|||+|+|+||+.+.+.+.+.+ ++|...+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn 33 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN 33 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 5999999999999999988753 6666543
No 461
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.38 E-value=0.044 Score=48.16 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=35.2
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
+++++|.|.|. |.+|..+++.|.+.|++|++.+|++++.+.+
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 44578999977 8899999999999999999999987655433
No 462
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.38 E-value=0.054 Score=49.78 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=51.7
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh---HHhC------------CCccCCCHHHHhhcCCEEEE
Q 018303 69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP---LISL------------GAKYQPSPDEVAASCDVTFA 132 (358)
Q Consensus 69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~---~~~~------------g~~~~~~~~~~~~~aDivi~ 132 (358)
.+++|.|-|+ |-||+.+.+.|...||.|.+.-|+++..+. +.+. .+.-..+++++++.||.|+-
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 5679999987 999999999999999999999998876322 2221 12335678899999999976
Q ss_pred ee
Q 018303 133 ML 134 (358)
Q Consensus 133 ~v 134 (358)
+.
T Consensus 85 ~A 86 (327)
T KOG1502|consen 85 TA 86 (327)
T ss_pred eC
Confidence 54
No 463
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.35 E-value=0.071 Score=47.31 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=32.6
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303 71 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 108 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~ 108 (358)
|+|.|+|. |.+|..+++.|.+.|++|++.+|++++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 39 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQE 39 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 47889975 999999999999999999999998765443
No 464
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.34 E-value=0.12 Score=50.71 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=45.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc-chh---hHHhCCCcc-CCCHHHHhhcCCEEEEee
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCD---PLISLGAKY-QPSPDEVAASCDVTFAML 134 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~-~~~---~~~~~g~~~-~~~~~~~~~~aDivi~~v 134 (358)
++++|+|+|+|.-|.+.++.|.+.|.+|+++|.+.. ... .+.+.+... .....+.+.++|+||..-
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECC
Confidence 457899999999999999999999999999995432 211 233222111 112235567899988765
No 465
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.33 E-value=0.042 Score=51.70 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=35.2
Q ss_pred CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303 67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD 107 (358)
Q Consensus 67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~ 107 (358)
+..+|+|.|.| +|.||+.+++.|.+.|++|++.+|++...+
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~ 48 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSL 48 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence 66778999998 599999999999999999999888765433
No 466
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.33 E-value=0.067 Score=48.51 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=46.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCCccCCCHHH
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDE 122 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~ 122 (358)
..+.+++|+|+|.+|.+++...+.+|. +|++.|.++++.+...+.|++-.-++.|
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d 246 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKD 246 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhh
Confidence 356799999999999999999999985 7999999999988888877765545543
No 467
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.32 E-value=0.048 Score=51.28 Aligned_cols=88 Identities=15% Similarity=0.264 Sum_probs=53.3
Q ss_pred CeEEEEcC-ChhHHHHHH-HHHHCCCc---EEEEcCCc--cchhhHHhCCCccC--CCHHHHhhcCCEEEEeeCChhhHh
Q 018303 71 GRIGFLGM-GIMGTPMAQ-NLLKAGCD---VTVWNRTK--SKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAM 141 (358)
Q Consensus 71 ~~IgIIG~-G~iG~~~a~-~l~~~g~~---V~~~~~~~--~~~~~~~~~g~~~~--~~~~~~~~~aDivi~~vp~~~~~~ 141 (358)
++|+|||+ |..|+.+.+ .+....++ +..++... .+...+........ .+.+ .++++|++++|+| ....+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~-~~~~~Divf~a~~-~~~s~ 79 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDID-ALKKLDIIITCQG-GDYTN 79 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChh-HhcCCCEEEECCC-HHHHH
Confidence 58999998 999999998 56666666 55554421 11111111111111 2233 4578999999997 44555
Q ss_pred hhhcccccccccCCCC--CEEEEccCC
Q 018303 142 DVACGKHGAASGMGPG--KGYVDVSTV 166 (358)
Q Consensus 142 ~~~~~~~~~~~~l~~~--~~vi~~s~~ 166 (358)
.+. +++ .+.| .++||.|..
T Consensus 80 ~~~---~~~---~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 80 EVY---PKL---RAAGWQGYWIDAAST 100 (369)
T ss_pred HHH---HHH---HhCCCCeEEEECChH
Confidence 555 333 2467 679998743
No 468
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=95.31 E-value=0.066 Score=47.82 Aligned_cols=41 Identities=22% Similarity=0.172 Sum_probs=34.9
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 107 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~ 107 (358)
+++++++.|.|. |.||..+++.|.+.|++|++.+|+.++.+
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~ 50 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELE 50 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 456678999975 99999999999999999999999865543
No 469
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.29 E-value=0.064 Score=47.66 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=34.6
Q ss_pred CCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 69 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 69 ~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
++++|.|.| .|.+|..+++.|.+.|++|.+.+|++++.+.+
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~ 44 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAA 44 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 346899997 59999999999999999999999987655443
No 470
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=95.27 E-value=0.28 Score=45.15 Aligned_cols=111 Identities=13% Similarity=0.120 Sum_probs=72.8
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCcEE-EEcCCccchhhHHhCCCccCCCHHHHhhc--CCEEEEeeCChhhHhhhhc
Q 018303 70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVAC 145 (358)
Q Consensus 70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~~~~ 145 (358)
..||.|-|. |+.|+..++...+.|-+|. ++++... -+.....|+..+.+..|+.+. +|+.++++| ++...+.+
T Consensus 29 ~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~Pgkg-g~~v~~~Gvpvy~sv~ea~~~~~~D~avI~VP-a~~v~dai- 105 (317)
T PTZ00187 29 NTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKA-GTTHLKHGLPVFATVKEAKKATGADASVIYVP-PPHAASAI- 105 (317)
T ss_pred CCeEEEecCCChHHHHHHHHHHHhCCcEEEEECCCCC-CceEecCCccccCCHHHHhcccCCCEEEEecC-HHHHHHHH-
Confidence 358999998 9999999999999998765 4665431 011111267888999999987 999999998 56666666
Q ss_pred ccccccccCCCC-CEEEEccCC-ChhHHHHHHHHHH-hcCCeEecC
Q 018303 146 GKHGAASGMGPG-KGYVDVSTV-DGDTSKLINGHIK-ATGASFLEA 188 (358)
Q Consensus 146 ~~~~~~~~l~~~-~~vi~~s~~-~~~~~~~l~~~l~-~~~~~~~~~ 188 (358)
.+..+ .| ..+|-++.+ +..+...+.+.++ +.++.++..
T Consensus 106 --~Ea~~---aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGP 146 (317)
T PTZ00187 106 --IEAIE---AEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGP 146 (317)
T ss_pred --HHHHH---cCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECC
Confidence 33332 33 223333444 4444455665554 357776653
No 471
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.26 E-value=0.1 Score=48.93 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=56.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH-C-CCcEEEEcCCccchhhHHhCCCccCCCHHHHhh--cCCEEEEeeCChhhHhhhh
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLK-A-GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~-~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~vp~~~~~~~~~ 144 (358)
.+.+|.|+|+|.+|...++.++. . +.+|++.++++++.+.+.+.+... ..++..+ ..|+|+-++... .....+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G~~-~~~~~~ 239 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVGGR-GSQSAI 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCCCC-ccHHHH
Confidence 35789999999999998888875 4 468999999887776654433221 1222222 368888877521 112222
Q ss_pred cccccccccCCCCCEEEEcc
Q 018303 145 CGKHGAASGMGPGKGYVDVS 164 (358)
Q Consensus 145 ~~~~~~~~~l~~~~~vi~~s 164 (358)
...+..++++..++..+
T Consensus 240 ---~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 240 ---NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ---HHHHHhCcCCcEEEEEe
Confidence 33345667777666554
No 472
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.25 E-value=0.12 Score=45.23 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=34.5
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303 68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 107 (358)
Q Consensus 68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~ 107 (358)
+++++|.|.|. |.+|..+++.|.+.|++|++.+|++++..
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~ 45 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLS 45 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHH
Confidence 45679999976 99999999999999999999999876543
No 473
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.24 E-value=0.054 Score=47.89 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=34.2
Q ss_pred CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccch
Q 018303 67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKC 106 (358)
Q Consensus 67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~ 106 (358)
++.+++|.|.| .|.+|..+++.|.+.|++|++.+|++++.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~ 43 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDA 43 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 45567899998 59999999999999999999999986543
No 474
>PRK06398 aldose dehydrogenase; Validated
Probab=95.24 E-value=0.088 Score=47.10 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=33.0
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS 104 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~ 104 (358)
+++++++.|.|. |.||..+++.|.+.|++|++.+|+..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 456678999975 79999999999999999999998754
No 475
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=95.23 E-value=0.079 Score=47.16 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=34.8
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 108 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~ 108 (358)
.+.++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~ 48 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAEL 48 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 356678888875 899999999999999999999998665443
No 476
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.22 E-value=0.089 Score=48.06 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=71.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccchhhHHhCCCccCCCHHHHhhcCCEEEEeeCChhhH---hhhhc--
Q 018303 71 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA---MDVAC-- 145 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~---~~~~~-- 145 (358)
++++|||--.==..+++.|.+.|++|..+.-.... ..+ .|+....+.++.++++|+|++.+|-+..- +..+.
T Consensus 2 ~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 2 IHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-DGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred cEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-ccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 58999999999999999999999999988753110 111 14555667777799999999999944322 11110
Q ss_pred ---ccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEec
Q 018303 146 ---GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 187 (358)
Q Consensus 146 ---~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 187 (358)
-++++++.++++.++. ++.. . ..+...++++++.+.+
T Consensus 79 ~~~l~~~~l~~~~~~~~~~-~G~~-~---~~l~~~a~~~gi~v~~ 118 (287)
T TIGR02853 79 KVVLTPELLESTKGHCTIY-VGIS-N---PYLEQLAADAGVKLIE 118 (287)
T ss_pred CccccHHHHHhcCCCCEEE-EecC-C---HHHHHHHHHCCCeEEE
Confidence 0345677777655433 2222 2 2344467778887774
No 477
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.21 E-value=0.097 Score=48.15 Aligned_cols=41 Identities=22% Similarity=0.142 Sum_probs=34.8
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 107 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~ 107 (358)
++.+++|.|.|. |.||..+++.|.+.|++|++.+|+.++.+
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~ 54 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGK 54 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 556678988875 99999999999999999999999866543
No 478
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=95.21 E-value=0.18 Score=45.41 Aligned_cols=111 Identities=17% Similarity=0.106 Sum_probs=63.0
Q ss_pred eEEEEcC-ChhHHHHHHHHHHCCCcEEEE--cCCcc--chhhHHhCCCcc------CCCHHHHhhc-CC-EEEEeeCChh
Q 018303 72 RIGFLGM-GIMGTPMAQNLLKAGCDVTVW--NRTKS--KCDPLISLGAKY------QPSPDEVAAS-CD-VTFAMLADPE 138 (358)
Q Consensus 72 ~IgIIG~-G~iG~~~a~~l~~~g~~V~~~--~~~~~--~~~~~~~~g~~~------~~~~~~~~~~-aD-ivi~~vp~~~ 138 (358)
+|.|.|+ |+||+.+++...+.++++... ++... ....+...++.. ..+++++++. +| ++|=-+ .|.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT-~P~ 80 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT-HPS 80 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC-ChH
Confidence 6889998 999999999998888987764 43221 111121113444 6788888877 89 555444 566
Q ss_pred hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCC
Q 018303 139 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 191 (358)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~ 191 (358)
.+...+ +. ..+.+..+|--++|.... .+.+.....++.++-+|.+
T Consensus 81 ~~~~n~---~~---~~~~gv~~ViGTTG~~~~--~~~~l~~~~~i~~l~apNf 125 (275)
T TIGR02130 81 AVNDNA---AF---YGKHGIPFVMGTTGGDRE--ALAKLVADAKHPAVIAPNM 125 (275)
T ss_pred HHHHHH---HH---HHHCCCCEEEcCCCCCHH--HHHHHHHhcCCCEEEECcc
Confidence 666665 22 234455455444443332 2333332233444444443
No 479
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.20 E-value=0.086 Score=46.99 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=35.0
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
+.++++-|.|. |.+|..+++.|.+.|++|.+.+|+.+..+..
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~ 46 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLA 46 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 44568889975 9999999999999999999999987655443
No 480
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.19 E-value=0.058 Score=47.71 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=35.1
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303 68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 108 (358)
Q Consensus 68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~ 108 (358)
+.++++.|+|. |.+|..+++.|.+.|++|++.+|++++.+.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~ 44 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAER 44 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45578999986 999999999999999999999998765443
No 481
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.19 E-value=0.084 Score=47.57 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=35.2
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
+.+++|.|.|. |.||..+++.|.+.|++|.+.+|++++.+.+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~ 45 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKET 45 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 44578999976 9999999999999999999999987665443
No 482
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.19 E-value=0.073 Score=51.77 Aligned_cols=70 Identities=24% Similarity=0.392 Sum_probs=53.3
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccch---------------------hhHHhCCCcc--------C
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC---------------------DPLISLGAKY--------Q 117 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~~---------------------~~~~~~g~~~--------~ 117 (358)
..++++|+|||.|.-|.+.|..|...|++|+++++.+... +.+.+.|+.+ .
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~ 199 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRD 199 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCc
Confidence 4456899999999999999999999999999998865431 1122233221 3
Q ss_pred CCHHHHhhcCCEEEEeeCC
Q 018303 118 PSPDEVAASCDVTFAMLAD 136 (358)
Q Consensus 118 ~~~~~~~~~aDivi~~vp~ 136 (358)
-+++++.++.|.|++++..
T Consensus 200 it~~~L~~e~Dav~l~~G~ 218 (457)
T COG0493 200 ITLEELLKEYDAVFLATGA 218 (457)
T ss_pred CCHHHHHHhhCEEEEeccc
Confidence 4788998889999999853
No 483
>PRK06194 hypothetical protein; Provisional
Probab=95.17 E-value=0.07 Score=48.45 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=34.1
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 107 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~ 107 (358)
.+.++++.|.|. |.||+.+++.|.+.|++|++.+|+.+..+
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~ 44 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALD 44 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence 345678888875 89999999999999999999999765544
No 484
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.17 E-value=0.59 Score=41.21 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhC--------CCccCCCHHHHhh--cCCEEEEeeC
Q 018303 67 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLA 135 (358)
Q Consensus 67 ~~~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~vp 135 (358)
.+...+|.|+|+|.+|+.+++.|+..|. +++++|.+.-....+..+ |-..+.-..+-+. +.++-+...+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 4556799999999999999999999996 788888764322222111 1111111111111 2344444442
Q ss_pred ChhhHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHHHHhcCCeEecCCCCCCCCcCCCCceEEEecC-----CH
Q 018303 136 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG-----DK 210 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~ 210 (358)
.. -+..-+ .+++ ...-.+||++.- .......+.+.+.+.++.++...-.++.. .+.-+-+.+ ..
T Consensus 88 ~~-i~~~~~---~~l~--~~~~D~VvdaiD-~~~~k~~L~~~c~~~~ip~I~s~g~g~~~----dp~~i~i~di~~t~~~ 156 (231)
T cd00755 88 EF-LTPDNS---EDLL--GGDPDFVVDAID-SIRAKVALIAYCRKRKIPVISSMGAGGKL----DPTRIRVADISKTSGD 156 (231)
T ss_pred ee-cCHhHH---HHHh--cCCCCEEEEcCC-CHHHHHHHHHHHHHhCCCEEEEeCCcCCC----CCCeEEEccEeccccC
Confidence 11 111111 1111 112356776643 34445567888888888888754333321 111122221 23
Q ss_pred hHHHHHHHHHHHhc----CCeEEeCC
Q 018303 211 SLYNTVAPLLDIMG----KSRFYLGD 232 (358)
Q Consensus 211 ~~~~~v~~ll~~~g----~~~~~~g~ 232 (358)
.....++.-|+.-| ..+++..+
T Consensus 157 pla~~~R~~Lrk~~~~~~~~~v~S~E 182 (231)
T cd00755 157 PLARKVRKRLRKRGIFFGVPVVYSTE 182 (231)
T ss_pred cHHHHHHHHHHHcCCCCCeEEEeCCC
Confidence 35567777777643 34566555
No 485
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.16 E-value=0.08 Score=48.25 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=26.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-cEEEEcCC
Q 018303 72 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 102 (358)
Q Consensus 72 ~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~ 102 (358)
+|.|||+|.+|..+++.|+..|. ++.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 58999999999999999999986 57777754
No 486
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.15 E-value=0.093 Score=55.19 Aligned_cols=113 Identities=17% Similarity=0.136 Sum_probs=69.9
Q ss_pred CeEEEEcCChhHHHH-HHHHHHCCCcEEEEcCCcc-chhhHHhCCCccCC-CHHHHhhcCCEEEEeeCCh---hhHhhhh
Q 018303 71 GRIGFLGMGIMGTPM-AQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQP-SPDEVAASCDVTFAMLADP---ESAMDVA 144 (358)
Q Consensus 71 ~~IgIIG~G~iG~~~-a~~l~~~g~~V~~~~~~~~-~~~~~~~~g~~~~~-~~~~~~~~aDivi~~vp~~---~~~~~~~ 144 (358)
++|.|||+|..|.+. |+.|.+.|++|.++|.+.. ..+.+.+.|+.... ...+.+.++|+||..-.-+ +......
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 479999999999997 9999999999999997543 23345555665422 2335567899988764222 2222211
Q ss_pred ------cccccccccCCCC-C-EEEEccCCChhHHHHHHHHHHhcCC
Q 018303 145 ------CGKHGAASGMGPG-K-GYVDVSTVDGDTSKLINGHIKATGA 183 (358)
Q Consensus 145 ------~~~~~~~~~l~~~-~-~vi~~s~~~~~~~~~l~~~l~~~~~ 183 (358)
.+..+++..+.++ . +-|--++|+..+..-+...|...+.
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 0112233332233 3 3333356777777777888877653
No 487
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.14 E-value=0.096 Score=53.65 Aligned_cols=68 Identities=24% Similarity=0.459 Sum_probs=49.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCcEEEEcCCccc---------------------hhhHHhCCCccC--------CC
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK---------------------CDPLISLGAKYQ--------PS 119 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~~---------------------~~~~~~~g~~~~--------~~ 119 (358)
.+++|.|||.|..|...|..|+..|++|+++++++.. .+.+...|+... .+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~ 271 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDIT 271 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccC
Confidence 4579999999999999999999999999999986532 122233343321 13
Q ss_pred HHHHhhcCCEEEEeeCC
Q 018303 120 PDEVAASCDVTFAMLAD 136 (358)
Q Consensus 120 ~~~~~~~aDivi~~vp~ 136 (358)
.+++....|.|++++..
T Consensus 272 ~~~~~~~~DaVilAtGa 288 (652)
T PRK12814 272 LEELQKEFDAVLLAVGA 288 (652)
T ss_pred HHHHHhhcCEEEEEcCC
Confidence 44555569999999853
No 488
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=95.14 E-value=0.069 Score=48.28 Aligned_cols=41 Identities=27% Similarity=0.443 Sum_probs=34.6
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 107 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~ 107 (358)
++.++++-|.|. |.||+.+++.|.+.|++|.+.+|+.+..+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~ 48 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAE 48 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 455678888876 89999999999999999999999865443
No 489
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.14 E-value=0.075 Score=47.67 Aligned_cols=41 Identities=27% Similarity=0.247 Sum_probs=34.3
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303 68 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 108 (358)
Q Consensus 68 ~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~ 108 (358)
+.++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~ 49 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDE 49 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45678989976 679999999999999999999998765443
No 490
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.13 E-value=0.063 Score=49.91 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=34.1
Q ss_pred CCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 70 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 70 ~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
++++-|.|+ |.||.++|+.|++.|++|++.+|++++.+.+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~ 93 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDV 93 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence 567888876 8899999999999999999999998765544
No 491
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.13 E-value=0.1 Score=46.96 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCC---hhHHHHHHHHHHCCCcEEEEcCC
Q 018303 68 ELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRT 102 (358)
Q Consensus 68 ~~~~~IgIIG~G---~iG~~~a~~l~~~g~~V~~~~~~ 102 (358)
+.++++-|.|.+ .||.++|+.|++.|++|++.+|+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence 456788899997 59999999999999999988886
No 492
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.11 E-value=0.072 Score=42.81 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=27.2
Q ss_pred EEEEcCChhHHHHHHHHHHCCCcEEEEcCCcc
Q 018303 73 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS 104 (358)
Q Consensus 73 IgIIG~G~iG~~~a~~l~~~g~~V~~~~~~~~ 104 (358)
+-|+|.|.++.++++.++..|++|+++|..++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 35899999999999999999999999998754
No 493
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=95.09 E-value=0.078 Score=51.33 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=66.4
Q ss_pred CeEEEEcCChhHH-HHHHHHHHC-----CCcEEEEcCCccchhhHHh--------CC----CccCCCHHHHhhcCCEEEE
Q 018303 71 GRIGFLGMGIMGT-PMAQNLLKA-----GCDVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFA 132 (358)
Q Consensus 71 ~~IgIIG~G~iG~-~~a~~l~~~-----g~~V~~~~~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivi~ 132 (358)
|||.|||.|+.=+ .+.+-+... +-+|..+|.++++.+.... .| +..+.|.++++++||+|+.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 5899999998511 233333322 3579999999977654321 12 4567899999999999999
Q ss_pred eeCChh-----------------------------------hHhhhhcccccccccCCCCCEEEEccCCChhHHHHHHHH
Q 018303 133 MLADPE-----------------------------------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH 177 (358)
Q Consensus 133 ~vp~~~-----------------------------------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~ 177 (358)
..--.. .+..++ +++ ....|++++||.++-.......+.+.
T Consensus 81 ~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~---~~i-~~~~pda~lin~tNP~~~vt~~~~~~ 156 (437)
T cd05298 81 QIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELI---DDI-EKYSPDAWILNYSNPAAIVAEALRRL 156 (437)
T ss_pred EeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHH---HHH-HHHCCCeEEEEecCcHHHHHHHHHHH
Confidence 874221 111111 222 23458999999988766666666555
Q ss_pred H
Q 018303 178 I 178 (358)
Q Consensus 178 l 178 (358)
.
T Consensus 157 ~ 157 (437)
T cd05298 157 F 157 (437)
T ss_pred C
Confidence 3
No 494
>PRK07877 hypothetical protein; Provisional
Probab=95.08 E-value=0.034 Score=56.92 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=51.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCC--cEEEEcCCccch------------------hhHHh----C--CC--c----
Q 018303 68 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKC------------------DPLIS----L--GA--K---- 115 (358)
Q Consensus 68 ~~~~~IgIIG~G~iG~~~a~~l~~~g~--~V~~~~~~~~~~------------------~~~~~----~--g~--~---- 115 (358)
+...+|+|+|+| +|+.+|..|+..|. +++++|.+.=.. +.+++ . .+ .
T Consensus 105 L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 105 LGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred HhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 566799999999 99999999999884 788887642111 11110 0 00 0
Q ss_pred --cCCCHHHHhhcCCEEEEeeCChhhHhhhh
Q 018303 116 --YQPSPDEVAASCDVTFAMLADPESAMDVA 144 (358)
Q Consensus 116 --~~~~~~~~~~~aDivi~~vp~~~~~~~~~ 144 (358)
..++.+++++++|+|+-|+ ++.+++.++
T Consensus 184 ~i~~~n~~~~l~~~DlVvD~~-D~~~~R~~l 213 (722)
T PRK07877 184 GLTEDNVDAFLDGLDVVVEEC-DSLDVKVLL 213 (722)
T ss_pred cCCHHHHHHHhcCCCEEEECC-CCHHHHHHH
Confidence 0235677888899999999 677777777
No 495
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.07 E-value=0.086 Score=49.99 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=38.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC-cEEEEcCCccchhhHHhCCC
Q 018303 69 LPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA 114 (358)
Q Consensus 69 ~~~~IgIIG~G~iG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~ 114 (358)
.+.+|.|+|.|.+|...++.++..|. +|++.++++++.+.+.+.|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga 237 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA 237 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence 35689999999999999999999998 59989998887766655554
No 496
>PRK09186 flagellin modification protein A; Provisional
Probab=95.07 E-value=0.099 Score=46.46 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=34.6
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchhhH
Q 018303 69 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 109 (358)
Q Consensus 69 ~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~~ 109 (358)
.++++.|.|. |.||..+|+.|.+.|++|.+.+|++++.+..
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~ 44 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNEL 44 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHH
Confidence 4578999976 8999999999999999999999987665443
No 497
>PLN02214 cinnamoyl-CoA reductase
Probab=95.05 E-value=0.074 Score=49.89 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=47.5
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccchh-----hHHhC--CC-------ccCCCHHHHhhcCCEEE
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD-----PLISL--GA-------KYQPSPDEVAASCDVTF 131 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~~~-----~~~~~--g~-------~~~~~~~~~~~~aDivi 131 (358)
...+++|.|.|. |.+|+.+++.|.+.|++|.+.+|+.+... .+... .+ .-..++.++++.+|+||
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 345678999987 99999999999999999999988765321 11100 11 11223456677888887
Q ss_pred EeeC
Q 018303 132 AMLA 135 (358)
Q Consensus 132 ~~vp 135 (358)
-+..
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 7763
No 498
>PLN00198 anthocyanidin reductase; Provisional
Probab=95.04 E-value=0.091 Score=49.05 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=32.6
Q ss_pred CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303 67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSK 105 (358)
Q Consensus 67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~ 105 (358)
...+++|.|.| +|-+|+.+++.|.+.|++|.+..|+.+.
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~ 45 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPEN 45 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 34467899997 7999999999999999999887776543
No 499
>PRK07035 short chain dehydrogenase; Provisional
Probab=95.04 E-value=0.094 Score=46.56 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=34.5
Q ss_pred CCCCCeEEEEc-CChhHHHHHHHHHHCCCcEEEEcCCccchhh
Q 018303 67 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 108 (358)
Q Consensus 67 ~~~~~~IgIIG-~G~iG~~~a~~l~~~g~~V~~~~~~~~~~~~ 108 (358)
.+.++++-|.| .|.||..+++.|.+.|++|++.+|+.+..+.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~ 47 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQA 47 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 35567888886 5999999999999999999999997655443
No 500
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.03 E-value=0.031 Score=53.52 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcC-ChhHHHHHHHHHHCCCcEEEEcCCccc
Q 018303 67 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK 105 (358)
Q Consensus 67 ~~~~~~IgIIG~-G~iG~~~a~~l~~~g~~V~~~~~~~~~ 105 (358)
...+++|.|+|. |.||+.+++.|.+.|++|.+.+|++..
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~ 96 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG 96 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence 456789999976 999999999999999999999997653
Done!