Query 018306
Match_columns 358
No_of_seqs 238 out of 490
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:52:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02485 Branch: Core-2/I-Bran 100.0 8.2E-47 1.8E-51 353.3 11.1 232 79-325 1-244 (244)
2 PLN03183 acetylglucosaminyltra 100.0 7.3E-44 1.6E-48 355.8 26.3 252 75-357 76-366 (421)
3 KOG0799 Branching enzyme [Carb 99.9 2.1E-21 4.6E-26 196.6 16.1 221 78-316 104-350 (439)
4 PF01405 PsbT: Photosystem II 20.4 1.3E+02 0.0028 19.2 2.6 18 5-22 3-20 (29)
5 PRK11875 psbT photosystem II r 18.5 1.4E+02 0.0031 19.2 2.5 18 5-22 3-20 (31)
6 CHL00031 psbT photosystem II p 16.5 1.6E+02 0.0035 19.3 2.4 17 6-22 4-20 (33)
7 KOG0681 Actin-related protein 16.1 73 0.0016 33.9 1.2 62 91-152 132-215 (645)
8 PRK15361 pathogenicity island 16.1 93 0.002 28.5 1.8 27 23-52 11-37 (195)
9 PF15337 Vasculin: Vascular pr 14.7 1.7E+02 0.0036 23.9 2.7 37 142-185 8-45 (97)
10 PRK14583 hmsR N-glycosyltransf 14.5 3.7E+02 0.008 27.3 5.9 92 75-175 73-171 (444)
No 1
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=8.2e-47 Score=353.28 Aligned_cols=232 Identities=24% Similarity=0.291 Sum_probs=150.2
Q ss_pred EEEEEEeCC-CCChhHHHHHHHccCCCceEEEEEcCCCCCCC--C-----CCCcccceeec-CcccccCCccHHHHHHHH
Q 018306 79 IAFLFLTNS-DLVFAPVWSQFFSGNERLYNIYVHADPSAKLS--D-----THKLFQNRFIP-AKRTERASPTLISAARRL 149 (358)
Q Consensus 79 iAfLfLa~~-~~~l~~Lwe~ff~~~~~~~sIYVH~D~k~~~~--~-----~~svf~~r~Ip-r~~V~WG~~SlV~AelrL 149 (358)
|||||+||+ +.++...|.+++. ++...+|||+|+|++.. . .......+.++ |++|.|||+|||+||++|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~--~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~l~l 78 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY--HPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGFSLVEATLNL 78 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH----TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSHHHHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc--CCCCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCccHHHHHHHH
Confidence 799999987 7766666666655 35667889999996532 1 02222334677 999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEcCCCccCCChHHHHHHHccCCcccccccccccccceeeeeccccc-cccccccccccccccCC
Q 018306 150 MANAILDDPLNLYFALVSQSCIPLHSFRFVYRSLFGNSIRVLNAFSTQSKHKSFIEILSRDP-NLAERYAARGQYVMLPE 228 (358)
Q Consensus 150 L~~AL~d~~~n~~FvLLSgsdiPL~s~~~I~~~L~~~~~~~~~~~~~~~~~~sFie~~~~~~-~~~~Ry~~r~~~~m~p~ 228 (358)
|+.|++.++.++|||||||+|+||+++++|++||+.++++ .+|++....+. ...+||..+....+.+.
T Consensus 79 l~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~-----------~~f~~~~~~~~~~~~~r~~~~~~~~~~~~ 147 (244)
T PF02485_consen 79 LREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGD-----------NNFIESFSDEDPRESGRYNPRIYDPFRPF 147 (244)
T ss_dssp HHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT-------------B---BEE--GGGG-HHHHEEEETTEEEE
T ss_pred HHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCC-----------Ccceecccccccchhhcceeeeeeecccc
Confidence 9999993378999999999999999999999999988531 57888766432 12266665422223333
Q ss_pred CCcccceeccceeeecHHHHHHHHhcHHHHHHhhccccCCCCccCcchhHhHhhcCC--CCCCCCCCceeEEeeCCCCCC
Q 018306 229 VPFEKFRVGSQFFILAKRHALLVLKDRKLWKKFKLPCLNIHSCYPEEHYFPTLLSMK--DPEGCSHYTLTRVNWTDSVDG 306 (358)
Q Consensus 229 i~~~~~rkGSQWfsLtR~~A~~Iv~d~~~~~~F~~~c~~~~~c~pDE~yf~TlL~~~--~~~~~~n~~ltyidW~~~~~~ 306 (358)
++..++++|||||+|||++|++|++|....+.|+++|+. +|+|||+||||||.|. ....+.++++|||||++.+++
T Consensus 148 ~~~~~~~~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~~~--~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~~~~ 225 (244)
T PF02485_consen 148 FRKRTLYKGSQWFSLTRDFVEYILDDPNYRPKLKKYFRF--SLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRRGGC 225 (244)
T ss_dssp EEEE--EEE-S--EEEHHHHHHHHH-HHHHHHHHHHT-T--SSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT-SS
T ss_pred cccccccccceeeEeeHHHHHHhhhhHHHHHHHHHhhcC--ccCcchhhHHHhhcccchhcccccCCCEEEEECCCCCCC
Confidence 444589999999999999999999999988999999854 6789999999999987 456789999999999944789
Q ss_pred CCccccCCCCCHHHHHHHH
Q 018306 307 HPHTYDTGEISPALIHTLR 325 (358)
Q Consensus 307 hP~~~~~~Dv~~e~l~~lr 325 (358)
||++++..+++.++++.|+
T Consensus 226 ~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 226 HPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp ---SSEEEE--GGGHHHH-
T ss_pred CCCeeeeeeeCHHHHHhhC
Confidence 9999999999999988774
No 2
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=7.3e-44 Score=355.80 Aligned_cols=252 Identities=19% Similarity=0.222 Sum_probs=185.2
Q ss_pred CCCcEEEEEEeC-CCC-ChhHHHHHHHccCCCceEEEEEcCCCCCCCC------------CCCccccee-ec-CcccccC
Q 018306 75 ARPKIAFLFLTN-SDL-VFAPVWSQFFSGNERLYNIYVHADPSAKLSD------------THKLFQNRF-IP-AKRTERA 138 (358)
Q Consensus 75 ~~~KiAfLfLa~-~~~-~l~~Lwe~ff~~~~~~~sIYVH~D~k~~~~~------------~~svf~~r~-Ip-r~~V~WG 138 (358)
.+||+||||++| |+. .+.+|.+.+ .++.+.+|||+|+|++... .-+.+.+.. +. +..|.||
T Consensus 76 ~~~r~AYLI~~h~~d~~~l~RLL~aL---YhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WG 152 (421)
T PLN03183 76 KLPRFAYLVSGSKGDLEKLWRTLRAL---YHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYR 152 (421)
T ss_pred CCCeEEEEEEecCCcHHHHHHHHHHh---cCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccC
Confidence 479999999998 674 466665554 3478889999999987531 011233333 34 5779999
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEEEcCCCccCCChHH-HHHHHccCCcccccccccccccceeeeeccccc-ccc--
Q 018306 139 SPTLISAARRLMANAILDDPLNLYFALVSQSCIPLHSFRF-VYRSLFGNSIRVLNAFSTQSKHKSFIEILSRDP-NLA-- 214 (358)
Q Consensus 139 ~~SlV~AelrLL~~AL~d~~~n~~FvLLSgsdiPL~s~~~-I~~~L~~~~~~~~~~~~~~~~~~sFie~~~~~~-~~~-- 214 (358)
|+|||+||+++++.+|....+++|||+|||+|+||+++++ |+.|+..+++ ++||++.+... ...
T Consensus 153 G~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~------------~NFI~~~s~~~wk~~~r 220 (421)
T PLN03183 153 GPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRN------------LNFIEHTSQLGWKEEKR 220 (421)
T ss_pred ChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCC------------ceeeecccccccchhhh
Confidence 9999999999999998854789999999999999999999 6788887775 78998765211 011
Q ss_pred --------ccccccccccc---c-CCCC-cccceeccceeeecHHHHHHHHh--c--HHHHHHhhccccCCCCccCcchh
Q 018306 215 --------ERYAARGQYVM---L-PEVP-FEKFRVGSQFFILAKRHALLVLK--D--RKLWKKFKLPCLNIHSCYPEEHY 277 (358)
Q Consensus 215 --------~Ry~~r~~~~m---~-p~i~-~~~~rkGSQWfsLtR~~A~~Iv~--d--~~~~~~F~~~c~~~~~c~pDE~y 277 (358)
+.|..+....+ . ...| ..++++|||||+|||++|+||+. | .+....|.+. +++|||+|
T Consensus 221 ~~~~i~~pgl~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~-----t~~pdE~f 295 (421)
T PLN03183 221 AMPLIIDPGLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTN-----FVSSPEGY 295 (421)
T ss_pred cceEEecCceeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhc-----CCCCchHH
Confidence 11110000000 0 0112 24689999999999999999995 2 3445556554 34599999
Q ss_pred HhHhhcCCC--CCCCCCCceeEEeeCCCCCCCCccccCCCCCHHHHHHHHhcCCCCCceEEecCCCCCcHHHHHHhhhhc
Q 018306 278 FPTLLSMKD--PEGCSHYTLTRVNWTDSVDGHPHTYDTGEISPALIHTLRQSNSRYSYFFARKFSPDCIKPLMKIASKVI 355 (358)
Q Consensus 278 f~TlL~~~~--~~~~~n~~ltyidW~~~~~~hP~~~~~~Dv~~e~l~~lr~~~~~~~~LFARKF~~~~~~~Ll~~~~~~~ 355 (358)
|||+|+|.. ...+.|.++|||||.++++.||++|+.+| +++|.++ +++|||||+. .+++|+.+|+.+
T Consensus 296 FqTVl~NS~~f~~t~vn~nLRyI~W~~~~~~~P~~l~~~D-----~~~l~~S----~~lFARKFd~--d~~vl~~Id~~l 364 (421)
T PLN03183 296 FHTVICNVPEFAKTAVNHDLHYISWDNPPKQHPHTLSLND-----TEKMIAS----GAAFARKFRR--DDPVLDKIDKEL 364 (421)
T ss_pred HHHHHhhcccccccccCCceeEEecCCCCCCCCcccCHHH-----HHHHHhC----CCccccCCCC--ChHHHHHHHHHH
Confidence 999999963 45678899999999985556999998654 5778774 7899999997 468999999887
Q ss_pred cC
Q 018306 356 FR 357 (358)
Q Consensus 356 ~~ 357 (358)
++
T Consensus 365 l~ 366 (421)
T PLN03183 365 LG 366 (421)
T ss_pred hC
Confidence 64
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.87 E-value=2.1e-21 Score=196.59 Aligned_cols=221 Identities=17% Similarity=0.153 Sum_probs=151.5
Q ss_pred cEEEEEEeCCCCChhHHHHHHHcc-CCCceEEEEEcCCCCCCC------CCCCcccceeec--CcccccCCccHHHHHHH
Q 018306 78 KIAFLFLTNSDLVFAPVWSQFFSG-NERLYNIYVHADPSAKLS------DTHKLFQNRFIP--AKRTERASPTLISAARR 148 (358)
Q Consensus 78 KiAfLfLa~~~~~l~~Lwe~ff~~-~~~~~sIYVH~D~k~~~~------~~~svf~~r~Ip--r~~V~WG~~SlV~Aelr 148 (358)
=+||+.+++|+.. ..+++++. .++.+-.+||+|.++... +-.++|.|..|. +..|.|||.|++.|.++
T Consensus 104 ~~a~~~~v~kd~~---~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~a~l~ 180 (439)
T KOG0799|consen 104 PAAFLRVVYKDYE---QVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILAAHLN 180 (439)
T ss_pred ceEEEEeecccHH---HHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhHHHHH
Confidence 4677777799952 22444443 346667789999998754 346677776653 78999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCCccCCChHHHHHHHccCCcccccccccccccceeeeeccccccc---cccccc------
Q 018306 149 LMANAILDDPLNLYFALVSQSCIPLHSFRFVYRSLFGNSIRVLNAFSTQSKHKSFIEILSRDPNL---AERYAA------ 219 (358)
Q Consensus 149 LL~~AL~d~~~n~~FvLLSgsdiPL~s~~~I~~~L~~~~~~~~~~~~~~~~~~sFie~~~~~~~~---~~Ry~~------ 219 (358)
+|+.+++...+++||++|||+|+||+++.++.+.|..-++ ..||+........ ..++..
T Consensus 181 c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g------------~N~i~~~~~~~~~~~~~~k~~~~~~~~~ 248 (439)
T KOG0799|consen 181 CLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRG------------ANFVEHTSEIGWKLNRKAKWDIIDLKYF 248 (439)
T ss_pred HHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCC------------cccccCcccccHHHhcccCCcccccchh
Confidence 9999998645699999999999999999999999987664 6677764421110 111110
Q ss_pred ccccccc-CCCC-cccceeccceeeecHHHHHHHHhcHHHHHHhhccccCCCCccCcchhHhHhhcCCCCCCCCCCc--e
Q 018306 220 RGQYVML-PEVP-FEKFRVGSQFFILAKRHALLVLKDRKLWKKFKLPCLNIHSCYPEEHYFPTLLSMKDPEGCSHYT--L 295 (358)
Q Consensus 220 r~~~~m~-p~i~-~~~~rkGSQWfsLtR~~A~~Iv~d~~~~~~F~~~c~~~~~c~pDE~yf~TlL~~~~~~~~~n~~--l 295 (358)
+.+..+. +.+| ..++++||.|++|+|++|++++.... -+.+.++.++ +..|||+||+|++.|.....-.+.+ +
T Consensus 249 ~~~s~~~~~~lp~~~ki~~Gs~~~~LsR~fv~y~i~~~~-~~~ll~~~~~--t~~~dE~f~~Tl~~n~~~~~g~~~~~~l 325 (439)
T KOG0799|consen 249 RNKSPLPWVILPTALKLFKGSAWVSLSRAFVEYLISGNL-PRTLLMYYNN--TYSPDEGFFHTLQCNPFGMPGVFNDECL 325 (439)
T ss_pred eecCCCccccCCCceEEEecceeEEEeHHHHHHHhcCcc-HHHHHHHHhC--ccCcchhhhHhhhccccCCCCcccchhh
Confidence 0000111 1112 24588999999999999999998633 2233333332 5569999999999998222223334 8
Q ss_pred eEEeeCC----CCCCCCccccCCCC
Q 018306 296 TRVNWTD----SVDGHPHTYDTGEI 316 (358)
Q Consensus 296 tyidW~~----~~~~hP~~~~~~Dv 316 (358)
|++.|.. .-+.||+.++..|.
T Consensus 326 r~~~W~~~~~~~~~~~c~~~~~~~~ 350 (439)
T KOG0799|consen 326 RYTNWDRKDVDPPKQHCHSLTVRDF 350 (439)
T ss_pred cceecccccccccccCCcccccccc
Confidence 9999986 22457888776664
No 4
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=20.39 E-value=1.3e+02 Score=19.15 Aligned_cols=18 Identities=39% Similarity=0.768 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 018306 5 PYFYSFALFISLSLLFFL 22 (358)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (358)
.+|++++|...+-++||-
T Consensus 3 a~vY~~ll~~tlgilffA 20 (29)
T PF01405_consen 3 ALVYTFLLIGTLGILFFA 20 (29)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhh
Confidence 368899999888888873
No 5
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=18.54 E-value=1.4e+02 Score=19.24 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 018306 5 PYFYSFALFISLSLLFFL 22 (358)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (358)
-++++|+|.+.|-++||-
T Consensus 3 al~Ytfll~~tlgiiFFA 20 (31)
T PRK11875 3 SFAYILILTLALVTLFFA 20 (31)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 368899999998888883
No 6
>CHL00031 psbT photosystem II protein T
Probab=16.51 E-value=1.6e+02 Score=19.29 Aligned_cols=17 Identities=35% Similarity=0.819 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHh
Q 018306 6 YFYSFALFISLSLLFFL 22 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (358)
++++++|.+.|-++||-
T Consensus 4 lvYtfll~~tlgilFFA 20 (33)
T CHL00031 4 LVYTFLLVSTLGIIFFA 20 (33)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 68889998888888883
No 7
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=16.10 E-value=73 Score=33.89 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=42.0
Q ss_pred hhHHHHHHHc---------cCCCceEEEEEcCCCCCCC--------CCC---Ccccceee-c-CcccccCCccHHHHHHH
Q 018306 91 FAPVWSQFFS---------GNERLYNIYVHADPSAKLS--------DTH---KLFQNRFI-P-AKRTERASPTLISAARR 148 (358)
Q Consensus 91 l~~Lwe~ff~---------~~~~~~sIYVH~D~k~~~~--------~~~---svf~~r~I-p-r~~V~WG~~SlV~Aelr 148 (358)
-..+-|.+|. |.+.+|++|=|..+..+.+ ..+ .|-.|+.| . .+.++|||++.++--.+
T Consensus 132 R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~ 211 (645)
T KOG0681|consen 132 RSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSR 211 (645)
T ss_pred HHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHH
Confidence 4556677776 4678999988777766432 111 23334433 2 57899999999999888
Q ss_pred HHHH
Q 018306 149 LMAN 152 (358)
Q Consensus 149 LL~~ 152 (358)
||+.
T Consensus 212 Lmq~ 215 (645)
T KOG0681|consen 212 LMQL 215 (645)
T ss_pred HHhc
Confidence 8876
No 8
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=16.07 E-value=93 Score=28.46 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=22.7
Q ss_pred hcCccCCCCCCCCCCCCCCCCCChHHHHHh
Q 018306 23 YGPHILPLKHPPTSHISIADDLDDLSLFRN 52 (358)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 52 (358)
-||.+++|.+.| -|+..+|+-+..+|+
T Consensus 11 ~~~~~~~~~~~~---~~~~~~md~~s~l~~ 37 (195)
T PRK15361 11 PAPSLLTPSSTP---SPSGEGMGTESMLLL 37 (195)
T ss_pred cCccccCCCCCC---CCCcccCCHHHHHHH
Confidence 789999998876 566789999998887
No 9
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=14.69 E-value=1.7e+02 Score=23.86 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHH-HhcCCCCcEEEEEcCCCccCCChHHHHHHHcc
Q 018306 142 LISAARRLMANA-ILDDPLNLYFALVSQSCIPLHSFRFVYRSLFG 185 (358)
Q Consensus 142 lV~AelrLL~~A-L~d~~~n~~FvLLSgsdiPL~s~~~I~~~L~~ 185 (358)
-++||-|||++. -+.++.|+ +.|.|| +-+++..|.++
T Consensus 8 SLEaEhRLLk~MGWqEy~eNd------e~~~Pl-TEDElkEF~~k 45 (97)
T PF15337_consen 8 SLEAEHRLLKAMGWQEYPEND------ENCLPL-TEDELKEFQVK 45 (97)
T ss_pred HHHHHHHHHHHhcccccCcCC------cccCcC-cHHHHHHHHHH
Confidence 479999999986 34445565 789998 34556666544
No 10
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=14.49 E-value=3.7e+02 Score=27.29 Aligned_cols=92 Identities=9% Similarity=0.013 Sum_probs=54.1
Q ss_pred CCCcEEEEEEeCCCC-ChhHHHHHHHccCCCceEEEEEcCCCCCCCC-C-CCc---cc-ceeecCcccccCCccHHHHHH
Q 018306 75 ARPKIAFLFLTNSDL-VFAPVWSQFFSGNERLYNIYVHADPSAKLSD-T-HKL---FQ-NRFIPAKRTERASPTLISAAR 147 (358)
Q Consensus 75 ~~~KiAfLfLa~~~~-~l~~Lwe~ff~~~~~~~sIYVH~D~k~~~~~-~-~sv---f~-~r~Ipr~~V~WG~~SlV~Ael 147 (358)
..|+++.++-++++. .+.+..+.+.+...+.++|+|--|.+.+... . ... .. .+.+.. ...+| .-.
T Consensus 73 ~~p~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~--~~n~G--ka~--- 145 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHL--AHNQG--KAI--- 145 (444)
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEe--CCCCC--HHH---
Confidence 357899999999874 4777788877665567899887776643320 0 000 00 011111 11223 222
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCCccCCC
Q 018306 148 RLMANAILDDPLNLYFALVSQSCIPLHS 175 (358)
Q Consensus 148 rLL~~AL~d~~~n~~FvLLSgsdiPL~s 175 (358)
-+..++.. ...++++.+-..|+|=.+
T Consensus 146 -AlN~gl~~-a~~d~iv~lDAD~~~~~d 171 (444)
T PRK14583 146 -ALRMGAAA-ARSEYLVCIDGDALLDKN 171 (444)
T ss_pred -HHHHHHHh-CCCCEEEEECCCCCcCHH
Confidence 23444444 467999999999998443
Done!