Query 018306
Match_columns 358
No_of_seqs 238 out of 490
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 13:10:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 1.8E-52 6.2E-57 416.8 18.5 252 76-356 83-382 (391)
2 3arc_T Photosystem II reaction 17.6 1E+02 0.0034 19.2 2.6 18 6-23 4-21 (32)
3 1v54_D Cytochrome C oxidase su 10.1 1.2E+02 0.0041 25.5 1.9 34 6-47 81-114 (147)
4 3arc_K Photosystem II reaction 8.4 1.2E+02 0.0042 19.4 0.9 11 14-24 17-27 (37)
5 2fy7_A Beta-1,4-galactosyltran 8.2 1.1E+03 0.036 21.1 12.3 80 75-176 63-146 (287)
6 1wmi_B RELB, hypothetical prot 7.8 1.3E+02 0.0044 21.4 0.9 21 314-342 34-54 (67)
7 2y69_D Cytochrome C oxidase su 7.6 1.7E+02 0.0059 25.0 1.9 34 6-47 103-136 (169)
8 2crg_A Metastasis associated p 7.3 1.3E+02 0.0045 21.6 0.8 39 144-184 13-51 (70)
9 3ckj_A Putative uncharacterize 6.5 1.3E+03 0.043 20.6 7.6 109 74-187 45-161 (329)
10 3arc_M Photosystem II reaction 6.1 4.1E+02 0.014 16.9 2.6 16 6-21 7-22 (36)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=1.8e-52 Score=416.81 Aligned_cols=252 Identities=17% Similarity=0.186 Sum_probs=199.8
Q ss_pred CCcEEEEEEeCCCCChhHHHHHHHccC-CCceEEEEEcCCCCCCC------CCCCcccceee--cCcccccCCccHHHHH
Q 018306 76 RPKIAFLFLTNSDLVFAPVWSQFFSGN-ERLYNIYVHADPSAKLS------DTHKLFQNRFI--PAKRTERASPTLISAA 146 (358)
Q Consensus 76 ~~KiAfLfLa~~~~~l~~Lwe~ff~~~-~~~~sIYVH~D~k~~~~------~~~svf~~r~I--pr~~V~WG~~SlV~Ae 146 (358)
.+||||||++||++ +.|++++++. ++.+.+|||+|++++.. ...++|.++.| +|+.|.|||+|||+||
T Consensus 83 ~~kiAflil~h~d~---~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~A~ 159 (391)
T 2gak_A 83 GFPIAYSIVVHHKI---EMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTRVKAD 159 (391)
T ss_dssp TSCEEEEEEECSCH---HHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECSSCCCCCTTSHHHHHHH
T ss_pred CCCEEEEEEecCCH---HHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEeccCcccccCCchHHHHH
Confidence 58999999999985 6778888853 58889999999998642 12456777776 3899999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCCccCCChHHHHHHHccCCcccccccccccccceeeeecccccccccccccc------
Q 018306 147 RRLMANAILDDPLNLYFALVSQSCIPLHSFRFVYRSLFGNSIRVLNAFSTQSKHKSFIEILSRDPNLAERYAAR------ 220 (358)
Q Consensus 147 lrLL~~AL~d~~~n~~FvLLSgsdiPL~s~~~I~~~L~~~~~~~~~~~~~~~~~~sFie~~~~~~~~~~Ry~~r------ 220 (358)
++||++||+++.+|+|||||||+|+||+++++|++||+.+++ ++||++.+......+|+..+
T Consensus 160 l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~------------~nFIe~~~~~~~~~~R~~~~~~~~~~ 227 (391)
T 2gak_A 160 LNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTG------------ENNLETEKMPPNKEERWKKRYAVVDG 227 (391)
T ss_dssp HHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTT------------CCBCCBEECCGGGSHHHHEEEEEETT
T ss_pred HHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCC------------CceeeccCCCcccccceEeeeecccc
Confidence 999999998746899999999999999999999999998664 89999886432212232211
Q ss_pred ------ccccccCCCCcccceeccceeeecHHHHHHHHhcHHHHHHhhccccCCCCccCcchhHhHhhcCCCCC-C----
Q 018306 221 ------GQYVMLPEVPFEKFRVGSQFFILAKRHALLVLKDRKLWKKFKLPCLNIHSCYPEEHYFPTLLSMKDPE-G---- 289 (358)
Q Consensus 221 ------~~~~m~p~i~~~~~rkGSQWfsLtR~~A~~Iv~d~~~~~~F~~~c~~~~~c~pDE~yf~TlL~~~~~~-~---- 289 (358)
.+..+.|. ..+|++|||||+|||++|++|++|.. .+.|.++|+. +|+|||||||||+.+.+.. .
T Consensus 228 ~l~~~~~~k~~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k~--t~~pDE~ffqTll~~~~~pg~~~~~ 302 (391)
T 2gak_A 228 KLTNTGIVKAPPPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQD--TYSPDEFLWATIQRIPEVPGSFPSS 302 (391)
T ss_dssp EEEEEEEECCCCSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHTT--SSSGGGTHHHHHTTSTTSTTCCCSS
T ss_pred ceeeecccccCCcc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHcC--CcCCchhHHHHHhhccCCCCccccc
Confidence 01123342 35899999999999999999999865 7788888887 8999999999999876422 1
Q ss_pred ------CCCCceeEEeeCC------CCCCCCc----------cccCCCCCHHHHHHHHhcCCCCCceEEecCCCCCcHHH
Q 018306 290 ------CSHYTLTRVNWTD------SVDGHPH----------TYDTGEISPALIHTLRQSNSRYSYFFARKFSPDCIKPL 347 (358)
Q Consensus 290 ------~~n~~ltyidW~~------~~~~hP~----------~~~~~Dv~~e~l~~lr~~~~~~~~LFARKF~~~~~~~L 347 (358)
..++++|||+|+. .|++||. +|+.+| ++.|+++ ++||||||+++++.++
T Consensus 303 ~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~D-----l~~l~~s----~~lFARKF~~~~d~~~ 373 (391)
T 2gak_A 303 NKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGD-----LSWMLRQ----HHLFANKFDMDVDPFA 373 (391)
T ss_dssp GGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGG-----HHHHTTS----CCSEEECCCTTTCHHH
T ss_pred cccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHH-----HHHHHhC----CCceEEccCCccCHHH
Confidence 1377899999973 1345777 677655 5778763 8999999999999999
Q ss_pred HHHhhhhcc
Q 018306 348 MKIASKVIF 356 (358)
Q Consensus 348 l~~~~~~~~ 356 (358)
++.+++.+.
T Consensus 374 l~~l~~~l~ 382 (391)
T 2gak_A 374 IQCLDEHLR 382 (391)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 2
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=17.65 E-value=1e+02 Score=19.21 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 018306 6 YFYSFALFISLSLLFFLY 23 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (358)
+|++++|.+.|-++||-.
T Consensus 4 ~vYt~ll~~tlgiiFFAI 21 (32)
T 3arc_T 4 ITYVFIFACIIALFFFAI 21 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 678888888888888733
No 3
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=10.12 E-value=1.2e+02 Score=25.47 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCccCCCCCCCCCCCCCCCCCChH
Q 018306 6 YFYSFALFISLSLLFFLYGPHILPLKHPPTSHISIADDLDDL 47 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 47 (358)
.+..+++++++.++++ +.-|..--++.| |.|++|
T Consensus 81 v~g~v~~~i~~s~~~f-~~~r~~v~~p~P-------~T~~~E 114 (147)
T 1v54_D 81 VVGAAMFFIGFTALLL-IWEKHYVYGPIP-------HTFEEE 114 (147)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHTCCCCC-------GGGSHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHccCCCC-------CCCCHH
Confidence 4556677888888888 555665322333 668877
No 4
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=8.40 E-value=1.2e+02 Score=19.36 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=7.3
Q ss_pred HHHHHHHHhhc
Q 018306 14 ISLSLLFFLYG 24 (358)
Q Consensus 14 ~~~~~~~~~~~ 24 (358)
=-+|++|+|||
T Consensus 17 PiIPv~f~lLa 27 (37)
T 3arc_K 17 PVIPVLFLALA 27 (37)
T ss_dssp GGHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 34678887665
No 5
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=8.23 E-value=1.1e+03 Score=21.09 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=50.5
Q ss_pred CCCcEEEEEEeCCCC-ChhHHHHHHH---ccCCCceEEEEEcCCCCCCCCCCCcccceeecCcccccCCccHHHHHHHHH
Q 018306 75 ARPKIAFLFLTNSDL-VFAPVWSQFF---SGNERLYNIYVHADPSAKLSDTHKLFQNRFIPAKRTERASPTLISAARRLM 150 (358)
Q Consensus 75 ~~~KiAfLfLa~~~~-~l~~Lwe~ff---~~~~~~~sIYVH~D~k~~~~~~~svf~~r~Ipr~~V~WG~~SlV~AelrLL 150 (358)
..+||+.+|-+++.. .+....+.+. +.....|.|+|--| ..+ ++++...|.-..+
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdd-s~d--------------------~~f~~a~a~N~G~ 121 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQ-AGD--------------------TIFNRAKLLNVGF 121 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-CSS--------------------SCCCHHHHHHHHH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEe-CCC--------------------CccchhhhhhhHH
Confidence 468999999998874 4666666665 33446777775433 111 1122233333344
Q ss_pred HHHHhcCCCCcEEEEEcCCCccCCCh
Q 018306 151 ANAILDDPLNLYFALVSQSCIPLHSF 176 (358)
Q Consensus 151 ~~AL~d~~~n~~FvLLSgsdiPL~s~ 176 (358)
..|+.. ...+|++++-+.|+|..+.
T Consensus 122 ~~al~~-A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 122 QEALKD-YDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp HHHHHH-SCCCEEEEECTTEEESBTT
T ss_pred HHHHHh-CCCCEEEEECCCcccCCCc
Confidence 445554 4679999999999998774
No 6
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=7.81 E-value=1.3e+02 Score=21.44 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHHhcCCCCCceEEecCCCC
Q 018306 314 GEISPALIHTLRQSNSRYSYFFARKFSPD 342 (358)
Q Consensus 314 ~Dv~~e~l~~lr~~~~~~~~LFARKF~~~ 342 (358)
+|++++-|.+|-.- ||+|+++
T Consensus 34 e~v~eeEl~ei~~e--------ARd~~~e 54 (67)
T 1wmi_B 34 EDITEEEIAELLEL--------ARDEDPE 54 (67)
T ss_dssp TTCCHHHHHHHHHH--------HTCCCGG
T ss_pred CCCCHHHHHHHHHH--------Hhccchh
Confidence 56888888887763 8999874
No 7
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=7.56 E-value=1.7e+02 Score=25.05 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCccCCCCCCCCCCCCCCCCCChH
Q 018306 6 YFYSFALFISLSLLFFLYGPHILPLKHPPTSHISIADDLDDL 47 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 47 (358)
.+..+++++++.+++| +.-|..--++.| |.|++|
T Consensus 103 V~ggv~~~i~~s~~~f-~~~r~~v~~p~P-------~T~~~E 136 (169)
T 2y69_D 103 VVGAAMFFIGFTALLL-IWEKHYVYGPIP-------HTFEEE 136 (169)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHTCCCCC-------GGGSHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHccCCCC-------CCCCHH
Confidence 4556677888888888 555665322333 668877
No 8
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=7.30 E-value=1.3e+02 Score=21.62 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCCccCCChHHHHHHHc
Q 018306 144 SAARRLMANAILDDPLNLYFALVSQSCIPLHSFRFVYRSLF 184 (358)
Q Consensus 144 ~AelrLL~~AL~d~~~n~~FvLLSgsdiPL~s~~~I~~~L~ 184 (358)
+.|.+++..||..-+. -|+.|+...+|-++..+|..|.-
T Consensus 13 ~eE~~~Fe~~l~~yGK--df~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 13 ASEACLFEEALEKYGK--DFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp HHHHHHHHHHHHHTCS--CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc--cHHHHHHHHcCCCCHHHHHHHHH
Confidence 6778899998875233 38888866799999999988853
No 9
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=6.54 E-value=1.3e+03 Score=20.57 Aligned_cols=109 Identities=13% Similarity=0.072 Sum_probs=58.4
Q ss_pred CCCCcEEEEEEeCCCC-ChhHHHHHHHccCC-CceEEEEEcCCCCCCC-CCCCcccceeecCccc---ccCCccHHHHHH
Q 018306 74 NARPKIAFLFLTNSDL-VFAPVWSQFFSGNE-RLYNIYVHADPSAKLS-DTHKLFQNRFIPAKRT---ERASPTLISAAR 147 (358)
Q Consensus 74 ~~~~KiAfLfLa~~~~-~l~~Lwe~ff~~~~-~~~sIYVH~D~k~~~~-~~~svf~~r~Ipr~~V---~WG~~SlV~Ael 147 (358)
+..|+|..+|-+++.. .+.+..+.+.+... ..+.|.|=-|.+.+.. ....-+..+.++++.+ .=...+...|-.
T Consensus 45 ~~~~~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n 124 (329)
T 3ckj_A 45 KAGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRPGKGEALW 124 (329)
T ss_dssp TTTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCCCSHHHHHH
T ss_pred ccCCcEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhhhhccceeeeccCCCCCCHHHHHH
Confidence 3468999999998865 47888888776432 3478887544443322 0000011111121111 112233556655
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCCccCC-C-hHHHHHHHccCC
Q 018306 148 RLMANAILDDPLNLYFALVSQSCIPLH-S-FRFVYRSLFGNS 187 (358)
Q Consensus 148 rLL~~AL~d~~~n~~FvLLSgsdiPL~-s-~~~I~~~L~~~~ 187 (358)
..++.| ..+|++++-..|+.+. + ...+.+.+..++
T Consensus 125 ~g~~~a-----~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~ 161 (329)
T 3ckj_A 125 RSLAAS-----RGDIVVFVDSDLINPHPMFVPWLVGPLLTGD 161 (329)
T ss_dssp HHHHHC-----CCSEEEECCTTEESCCTTHHHHHHHHHHSCS
T ss_pred HHHHhC-----CCCEEEEECCCCCCcChHHHHHHHHHHHhCC
Confidence 555544 3478888888887332 2 355666655443
No 10
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=6.14 E-value=4.1e+02 Score=16.88 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 018306 6 YFYSFALFISLSLLFF 21 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (358)
-++..+|++.+|..|+
T Consensus 7 ~fiAt~Lfi~iPt~FL 22 (36)
T 3arc_M 7 GLIATALFVLVPSVFL 22 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567788999998777
Done!