Query 018306
Match_columns 358
No_of_seqs 238 out of 490
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 13:11:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018306.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018306hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 54.1 36 0.0026 27.3 9.8 106 77-187 1-117 (255)
2 d2qalc1 d.52.3.1 (C:1-105) Rib 14.8 36 0.0026 25.0 2.0 30 237-266 18-47 (105)
3 d2uubc1 d.52.3.1 (C:2-106) Rib 10.7 35 0.0025 25.0 0.7 30 237-266 18-47 (105)
4 d1d4ta_ d.93.1.1 (A:) The Xlp 10.2 86 0.0063 21.7 2.9 22 131-152 2-23 (104)
5 d2axtk1 f.23.36.1 (K:10-46) Ph 9.7 47 0.0035 19.6 0.9 12 13-24 16-27 (37)
6 d1c9fa_ d.15.2.1 (A:) Caspase- 8.4 31 0.0023 24.7 -0.4 14 270-284 56-69 (87)
7 d1v54d_ f.23.1.1 (D:) Mitochon 7.7 81 0.0059 24.4 1.8 37 7-54 79-115 (144)
8 d1ibxa_ d.15.2.1 (A:) Caspase- 7.4 37 0.0027 23.9 -0.4 14 270-284 53-66 (81)
9 d1iioa_ a.39.4.1 (A:) Hypothet 6.4 44 0.0032 23.7 -0.4 20 165-184 60-79 (84)
10 d2axtz1 f.17.5.1 (Z:1-62) Phot 5.6 1.8E+02 0.013 19.1 2.5 16 6-21 13-28 (62)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=54.12 E-value=36 Score=27.33 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=61.3
Q ss_pred CcEEEEEEeCCCC-ChhHHHHHHHccCCCceEEEEEcCCCCCCC-CC-CCc---ccceeecCccccc----CCccHHHHH
Q 018306 77 PKIAFLFLTNSDL-VFAPVWSQFFSGNERLYNIYVHADPSAKLS-DT-HKL---FQNRFIPAKRTER----ASPTLISAA 146 (358)
Q Consensus 77 ~KiAfLfLa~~~~-~l~~Lwe~ff~~~~~~~sIYVH~D~k~~~~-~~-~sv---f~~r~Ipr~~V~W----G~~SlV~Ae 146 (358)
|||+.++-|++.. .+.+.++...+...+.+.|+|.-|.+.+.. .. .+. ..-+.+......+ ...+.-.|-
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~ 80 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALI 80 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhcccc
Confidence 7899999998764 488888887765447799999988665332 00 010 0001111111111 233333443
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCCccCCC-hHHHHHHHccCC
Q 018306 147 RRLMANAILDDPLNLYFALVSQSCIPLHS-FRFVYRSLFGNS 187 (358)
Q Consensus 147 lrLL~~AL~d~~~n~~FvLLSgsdiPL~s-~~~I~~~L~~~~ 187 (358)
-..++.| ..+|+++|-..|++..+ .+.+.+++.+++
T Consensus 81 N~gi~~a-----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~ 117 (255)
T d1qg8a_ 81 NQAIEMA-----EGEYITYATDDNIYMPDRLLKMVRELDTHP 117 (255)
T ss_dssp HHHHHHC-----CCSEEEEEETTEEECTTHHHHHHHHHHHCT
T ss_pred ccccccc-----ccccccccccccccccchHHHHHHHHHhCC
Confidence 3344433 35899999999999765 344556665554
No 2
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.78 E-value=36 Score=24.99 Aligned_cols=30 Identities=20% Similarity=0.090 Sum_probs=25.1
Q ss_pred ccceeeecHHHHHHHHhcHHHHHHhhcccc
Q 018306 237 GSQFFILAKRHALLVLKDRKLWKKFKLPCL 266 (358)
Q Consensus 237 GSQWfsLtR~~A~~Iv~d~~~~~~F~~~c~ 266 (358)
.|.||+=.++.+++|.+|.++.....+.+.
T Consensus 18 ~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2qalc1 18 NSTWFANTKEFADNLDSDFKVRQYLTKELA 47 (105)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCEEcCCccchHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999887766666554
No 3
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=10.65 E-value=35 Score=24.99 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=25.0
Q ss_pred ccceeeecHHHHHHHHhcHHHHHHhhcccc
Q 018306 237 GSQFFILAKRHALLVLKDRKLWKKFKLPCL 266 (358)
Q Consensus 237 GSQWfsLtR~~A~~Iv~d~~~~~~F~~~c~ 266 (358)
.|.||+=.++.++++.+|.++...+.+.+.
T Consensus 18 ~S~W~a~~~~y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2uubc1 18 ESRWYAGKKQYRHLLLEDQRIRGLLEKELY 47 (105)
T ss_dssp SCBCCCCTTTTTHHHHHHHHHHHHHHHSTT
T ss_pred CceEcCChhhhHHHHHHHHHHHHHHHhhcc
Confidence 699999899999999999887766666544
No 4
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.24 E-value=86 Score=21.72 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=18.3
Q ss_pred cCcccccCCccHHHHHHHHHHH
Q 018306 131 PAKRTERASPTLISAARRLMAN 152 (358)
Q Consensus 131 pr~~V~WG~~SlV~AelrLL~~ 152 (358)
++.+-+||..|--+||..|.+.
T Consensus 2 e~~pwyhG~isR~eAe~lL~~~ 23 (104)
T d1d4ta_ 2 DAVAVYHGKISRETGEKLLLAT 23 (104)
T ss_dssp TTCTTBCCSCCHHHHHHHHHHH
T ss_pred CcCCccccCCCHHHHHHHHhhC
Confidence 3567889999999999888765
No 5
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.72 E-value=47 Score=19.62 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhc
Q 018306 13 FISLSLLFFLYG 24 (358)
Q Consensus 13 ~~~~~~~~~~~~ 24 (358)
+=-+|++|+|||
T Consensus 16 lPiIPv~f~lLa 27 (37)
T d2axtk1 16 LPVIPVLFLALA 27 (37)
T ss_dssp GGGHHHHHHHHH
T ss_pred hccHHHHHHHHH
Confidence 345677777554
No 6
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.42 E-value=31 Score=24.67 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=10.6
Q ss_pred CccCcchhHhHhhcC
Q 018306 270 SCYPEEHYFPTLLSM 284 (358)
Q Consensus 270 ~c~pDE~yf~TlL~~ 284 (358)
+.. ||.|||||=.|
T Consensus 56 T~V-dEeYF~tLp~n 69 (87)
T d1c9fa_ 56 TEV-TDDCFPGLPND 69 (87)
T ss_dssp CCB-CTTSCSSCCTT
T ss_pred cEe-cHHHHhcCCCC
Confidence 565 89999998544
No 7
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.67 E-value=81 Score=24.41 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhcCccCCCCCCCCCCCCCCCCCChHHHHHhhc
Q 018306 7 FYSFALFISLSLLFFLYGPHILPLKHPPTSHISIADDLDDLSLFRNAT 54 (358)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~a~ 54 (358)
+..+++++|+.++++ ..-|..--+++| |.|++| |++.
T Consensus 79 ~g~~~~~i~~s~~i~-~~~r~~v~p~~P-------~T~~~E---wqea 115 (144)
T d1v54d_ 79 VGAAMFFIGFTALLL-IWEKHYVYGPIP-------HTFEEE---WVAK 115 (144)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHTCCCCC-------GGGSHH---HHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHcCCCCC-------CCCCHH---HHHH
Confidence 444667788887777 444553322233 669877 6654
No 8
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.37 E-value=37 Score=23.91 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=10.6
Q ss_pred CccCcchhHhHhhcC
Q 018306 270 SCYPEEHYFPTLLSM 284 (358)
Q Consensus 270 ~c~pDE~yf~TlL~~ 284 (358)
+.. ||.|||||=.|
T Consensus 53 T~V-~EeYF~tLp~n 66 (81)
T d1ibxa_ 53 TEL-TEDYFPSVPDN 66 (81)
T ss_dssp SCC-CSSSCSSCCSC
T ss_pred cEe-eHHHHhcCCCC
Confidence 565 88899998544
No 9
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=6.42 E-value=44 Score=23.65 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=16.6
Q ss_pred EEcCCCccCCChHHHHHHHc
Q 018306 165 LVSQSCIPLHSFRFVYRSLF 184 (358)
Q Consensus 165 LLSgsdiPL~s~~~I~~~L~ 184 (358)
+|.++|+|+++.+.+.+-+.
T Consensus 60 ~l~~~DFP~ksae~lad~ii 79 (84)
T d1iioa_ 60 VLTADDFPFKSAEEVADTIV 79 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHH
T ss_pred hcCcccCCCCCHHHHHHHHH
Confidence 46689999999999887765
No 10
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.59 E-value=1.8e+02 Score=19.08 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 018306 6 YFYSFALFISLSLLFF 21 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (358)
.++||.|..+.|++|-
T Consensus 13 i~~SF~lVVgVPV~~A 28 (62)
T d2axtz1 13 VILSFVMVIGVPVAYA 28 (62)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHheeceEEEE
Confidence 4678999999999887
Done!