Query 018307
Match_columns 358
No_of_seqs 190 out of 2305
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:53:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00343 triose or hexose phos 100.0 2.2E-38 4.8E-43 290.8 37.6 295 53-350 46-350 (350)
2 TIGR00817 tpt Tpt phosphate/ph 100.0 1.8E-37 3.9E-42 281.0 32.2 294 56-355 2-300 (302)
3 KOG1441 Glucose-6-phosphate/ph 100.0 6.2E-38 1.3E-42 276.5 14.4 301 53-356 14-315 (316)
4 PLN00411 nodulin MtN21 family 100.0 6E-30 1.3E-34 234.0 32.0 292 54-354 11-334 (358)
5 PF08449 UAA: UAA transporter 100.0 1.3E-29 2.8E-34 229.2 30.1 286 63-354 7-303 (303)
6 KOG1444 Nucleotide-sugar trans 100.0 1.3E-29 2.8E-34 218.6 26.9 300 53-356 9-308 (314)
7 PRK11272 putative DMT superfam 100.0 1.6E-26 3.5E-31 208.1 33.4 274 56-352 12-289 (292)
8 PF06027 DUF914: Eukaryotic pr 100.0 4.5E-27 9.7E-32 210.5 28.4 274 71-353 28-310 (334)
9 PRK11689 aromatic amino acid e 100.0 7.6E-27 1.6E-31 210.5 30.2 271 53-351 5-290 (295)
10 KOG1443 Predicted integral mem 100.0 5.6E-28 1.2E-32 205.3 21.0 295 52-348 12-315 (349)
11 PRK11453 O-acetylserine/cystei 100.0 6E-26 1.3E-30 205.1 31.9 280 53-351 5-290 (299)
12 PRK15430 putative chlorampheni 100.0 1.1E-25 2.4E-30 203.0 30.5 276 53-349 9-286 (296)
13 PRK10532 threonine and homoser 100.0 7E-25 1.5E-29 197.5 32.8 271 53-354 13-287 (293)
14 TIGR00950 2A78 Carboxylate/Ami 99.9 9E-25 2E-29 193.9 28.3 252 72-343 5-259 (260)
15 KOG1442 GDP-fucose transporter 99.9 1.2E-27 2.7E-32 199.9 5.0 300 54-356 26-335 (347)
16 COG5070 VRG4 Nucleotide-sugar 99.9 1.3E-24 2.9E-29 176.5 17.6 288 59-355 9-303 (309)
17 KOG1581 UDP-galactose transpor 99.9 6.4E-23 1.4E-27 174.8 23.5 293 53-353 11-318 (327)
18 TIGR03340 phn_DUF6 phosphonate 99.9 2.5E-22 5.3E-27 180.0 26.7 268 66-345 11-280 (281)
19 KOG1580 UDP-galactose transpor 99.9 2.3E-23 4.9E-28 170.7 14.8 261 84-352 50-317 (337)
20 TIGR00688 rarD rarD protein. T 99.9 3.3E-20 7.1E-25 164.2 27.7 248 53-323 3-255 (256)
21 KOG2765 Predicted membrane pro 99.9 3E-21 6.5E-26 169.0 17.8 297 53-351 11-393 (416)
22 COG0697 RhaT Permeases of the 99.9 7E-19 1.5E-23 158.5 33.0 270 62-349 13-288 (292)
23 KOG1582 UDP-galactose transpor 99.9 3.1E-20 6.6E-25 155.5 18.5 290 53-350 40-334 (367)
24 COG5006 rhtA Threonine/homoser 99.9 6.2E-19 1.3E-23 146.6 25.9 256 73-354 29-288 (292)
25 KOG4510 Permease of the drug/m 99.8 2.1E-22 4.6E-27 168.1 -1.4 276 55-350 38-327 (346)
26 PF04142 Nuc_sug_transp: Nucle 99.8 4.9E-19 1.1E-23 153.7 18.6 215 119-339 13-244 (244)
27 COG2962 RarD Predicted permeas 99.8 5.8E-17 1.3E-21 138.6 30.3 280 53-354 8-289 (293)
28 KOG2234 Predicted UDP-galactos 99.8 1E-16 2.2E-21 141.0 28.8 283 64-352 23-326 (345)
29 KOG3912 Predicted integral mem 99.8 1E-17 2.3E-22 141.1 21.1 285 62-348 9-334 (372)
30 TIGR00776 RhaT RhaT L-rhamnose 99.8 7E-17 1.5E-21 144.8 27.7 265 54-348 3-288 (290)
31 KOG1583 UDP-N-acetylglucosamin 99.8 4.6E-19 9.9E-24 149.0 12.4 264 74-349 21-315 (330)
32 PF03151 TPT: Triose-phosphate 99.8 2.5E-17 5.5E-22 134.0 16.1 145 204-348 1-153 (153)
33 KOG2766 Predicted membrane pro 99.7 4.4E-17 9.6E-22 135.6 4.2 265 67-350 29-301 (336)
34 TIGR00803 nst UDP-galactose tr 99.4 1.7E-12 3.8E-17 112.2 12.4 194 147-346 2-222 (222)
35 KOG4314 Predicted carbohydrate 99.4 2.9E-13 6.3E-18 108.7 6.2 226 120-354 50-282 (290)
36 COG2510 Predicted membrane pro 99.3 8.9E-12 1.9E-16 93.2 9.4 126 66-194 13-138 (140)
37 PF00892 EamA: EamA-like trans 99.3 2E-11 4.4E-16 95.4 9.7 120 70-194 5-125 (126)
38 COG2510 Predicted membrane pro 99.2 8.3E-11 1.8E-15 88.1 9.3 135 204-347 4-138 (140)
39 PF13536 EmrE: Multidrug resis 99.2 2.1E-10 4.6E-15 88.0 9.3 107 92-199 2-110 (113)
40 PF00892 EamA: EamA-like trans 99.1 4.7E-10 1E-14 87.6 10.2 124 213-347 1-125 (126)
41 PF06800 Sugar_transport: Suga 99.1 7.1E-08 1.5E-12 83.8 21.8 210 120-345 42-268 (269)
42 PRK15430 putative chlorampheni 98.9 1E-07 2.2E-12 86.1 18.2 141 199-347 4-144 (296)
43 TIGR00688 rarD rarD protein. T 98.9 8.1E-08 1.7E-12 84.9 17.2 139 203-347 2-141 (256)
44 TIGR00950 2A78 Carboxylate/Ami 98.8 1.7E-07 3.6E-12 83.1 16.0 128 59-190 131-259 (260)
45 TIGR03340 phn_DUF6 phosphonate 98.8 1.7E-07 3.8E-12 84.0 15.0 133 205-348 3-135 (281)
46 PRK13499 rhamnose-proton sympo 98.7 2.4E-05 5.1E-10 71.0 25.0 287 53-348 4-341 (345)
47 PF05653 Mg_trans_NIPA: Magnes 98.7 1.4E-07 3.1E-12 84.5 10.4 209 130-351 57-295 (300)
48 PLN00411 nodulin MtN21 family 98.6 1.7E-06 3.7E-11 79.8 15.5 137 204-348 14-156 (358)
49 PRK15051 4-amino-4-deoxy-L-ara 98.5 1.7E-06 3.6E-11 65.7 11.0 65 131-195 45-109 (111)
50 PF03151 TPT: Triose-phosphate 98.5 7.1E-06 1.5E-10 66.4 15.2 132 61-193 5-151 (153)
51 PRK10532 threonine and homoser 98.5 6.3E-06 1.4E-10 74.4 16.3 129 59-194 151-280 (293)
52 PRK11272 putative DMT superfam 98.4 8.1E-06 1.8E-10 73.6 15.3 109 87-196 177-286 (292)
53 COG2962 RarD Predicted permeas 98.4 2.4E-05 5.2E-10 67.9 15.3 142 201-350 5-146 (293)
54 PRK11689 aromatic amino acid e 98.4 1.6E-05 3.5E-10 71.7 15.0 129 59-195 159-287 (295)
55 TIGR00817 tpt Tpt phosphate/ph 98.3 7.8E-06 1.7E-10 74.1 12.4 138 57-195 146-293 (302)
56 PRK02971 4-amino-4-deoxy-L-ara 98.3 1.9E-05 4.2E-10 61.5 12.7 123 203-352 2-126 (129)
57 PRK11453 O-acetylserine/cystei 98.3 3.9E-05 8.6E-10 69.4 16.6 140 57-196 144-288 (299)
58 PTZ00343 triose or hexose phos 98.2 5.9E-05 1.3E-09 69.8 16.2 138 56-194 194-347 (350)
59 PF13536 EmrE: Multidrug resis 98.2 6.3E-05 1.4E-09 57.5 12.4 73 279-352 37-110 (113)
60 TIGR00776 RhaT RhaT L-rhamnose 98.1 6.1E-05 1.3E-09 67.8 12.7 132 204-350 2-138 (290)
61 KOG2922 Uncharacterized conser 98.0 1.6E-05 3.5E-10 69.7 7.6 210 129-352 70-310 (335)
62 PF08449 UAA: UAA transporter 98.0 0.0002 4.3E-09 64.9 14.0 132 214-354 11-142 (303)
63 PRK02971 4-amino-4-deoxy-L-ara 97.9 5.5E-05 1.2E-09 58.9 8.2 72 126-197 51-124 (129)
64 COG0697 RhaT Permeases of the 97.8 0.0012 2.6E-08 59.1 16.1 132 57-196 155-288 (292)
65 PRK10452 multidrug efflux syst 97.8 0.00013 2.9E-09 55.7 7.4 71 126-196 33-104 (120)
66 PRK15051 4-amino-4-deoxy-L-ara 97.7 0.00032 7E-09 53.2 9.3 57 291-347 52-108 (111)
67 COG5006 rhtA Threonine/homoser 97.6 0.0013 2.9E-08 56.0 12.3 127 59-191 151-278 (292)
68 PF04657 DUF606: Protein of un 97.6 0.0018 4E-08 51.1 12.7 130 205-345 3-138 (138)
69 PF06027 DUF914: Eukaryotic pr 97.6 0.0017 3.6E-08 59.1 14.0 141 203-350 13-153 (334)
70 PRK10650 multidrug efflux syst 97.6 0.0011 2.4E-08 49.8 10.6 69 126-194 38-107 (109)
71 PRK09541 emrE multidrug efflux 97.6 0.00041 8.8E-09 52.3 8.0 70 127-196 34-104 (110)
72 PRK11431 multidrug efflux syst 97.6 0.00043 9.4E-09 51.7 7.9 71 124-194 30-101 (105)
73 COG2076 EmrE Membrane transpor 97.5 0.00044 9.6E-09 51.1 7.2 72 124-195 31-103 (106)
74 COG4975 GlcU Putative glucose 97.5 2.2E-05 4.7E-10 66.2 0.0 268 53-350 3-287 (288)
75 PF06800 Sugar_transport: Suga 97.4 0.0027 5.8E-08 55.6 12.1 105 69-183 151-255 (269)
76 PRK10452 multidrug efflux syst 97.4 0.0047 1E-07 47.3 11.8 59 294-352 48-107 (120)
77 PRK09541 emrE multidrug efflux 97.4 0.0038 8.3E-08 47.1 11.0 57 294-350 48-105 (110)
78 PF04142 Nuc_sug_transp: Nucle 97.3 0.0014 2.9E-08 57.3 9.1 79 274-352 15-93 (244)
79 PRK10650 multidrug efflux syst 97.3 0.011 2.4E-07 44.4 12.4 53 295-347 54-107 (109)
80 PRK13499 rhamnose-proton sympo 97.2 0.0097 2.1E-07 54.3 13.5 139 201-349 5-154 (345)
81 COG2076 EmrE Membrane transpor 97.1 0.014 3E-07 43.2 10.9 55 295-349 49-104 (106)
82 PF04657 DUF606: Protein of un 97.1 0.029 6.4E-07 44.3 13.3 121 68-192 13-138 (138)
83 KOG2234 Predicted UDP-galactos 97.0 0.054 1.2E-06 48.8 15.7 144 205-348 17-164 (345)
84 PRK11431 multidrug efflux syst 96.9 0.027 5.8E-07 42.1 11.4 53 296-348 49-102 (105)
85 PF00893 Multi_Drug_Res: Small 96.9 0.0026 5.7E-08 46.6 5.7 59 128-186 34-93 (93)
86 PF05653 Mg_trans_NIPA: Magnes 96.8 0.0086 1.9E-07 54.0 9.6 121 200-350 4-124 (300)
87 TIGR00803 nst UDP-galactose tr 96.8 0.018 4E-07 49.5 11.4 67 126-192 155-221 (222)
88 COG3238 Uncharacterized protei 96.8 0.044 9.6E-07 43.4 12.3 137 202-347 4-145 (150)
89 KOG1441 Glucose-6-phosphate/ph 96.6 0.0051 1.1E-07 55.4 6.6 140 54-195 161-307 (316)
90 PF10639 UPF0546: Uncharacteri 96.6 0.004 8.7E-08 46.9 4.5 65 129-193 47-112 (113)
91 KOG4510 Permease of the drug/m 96.2 0.0019 4.1E-08 55.5 1.0 134 202-349 37-170 (346)
92 KOG1581 UDP-galactose transpor 96.1 0.15 3.3E-06 44.9 12.4 139 54-193 170-311 (327)
93 COG4975 GlcU Putative glucose 95.7 0.0087 1.9E-07 50.9 2.9 136 204-355 3-143 (288)
94 KOG2765 Predicted membrane pro 95.5 0.023 5E-07 51.4 5.1 81 274-354 157-237 (416)
95 PF00893 Multi_Drug_Res: Small 95.4 0.15 3.3E-06 37.2 8.3 47 293-339 46-93 (93)
96 COG3238 Uncharacterized protei 95.4 1.1 2.3E-05 35.7 13.7 126 66-194 15-145 (150)
97 PF07857 DUF1632: CEO family ( 95.3 0.039 8.4E-07 48.1 5.5 131 204-352 1-138 (254)
98 KOG1580 UDP-galactose transpor 94.9 0.058 1.3E-06 45.6 5.3 132 211-352 21-161 (337)
99 KOG1444 Nucleotide-sugar trans 93.9 0.45 9.8E-06 42.4 8.9 138 57-195 158-300 (314)
100 COG5070 VRG4 Nucleotide-sugar 93.4 2.8 6E-05 35.6 12.2 108 87-194 185-295 (309)
101 PF06379 RhaT: L-rhamnose-prot 92.9 4.6 0.0001 36.7 13.7 141 202-351 6-156 (344)
102 KOG4314 Predicted carbohydrate 92.6 0.079 1.7E-06 43.6 2.1 64 288-351 65-128 (290)
103 PF10639 UPF0546: Uncharacteri 91.6 0.41 8.8E-06 36.2 4.7 52 294-345 59-111 (113)
104 KOG2922 Uncharacterized conser 86.0 0.31 6.7E-06 43.5 0.8 126 199-354 17-142 (335)
105 PF07857 DUF1632: CEO family ( 85.0 25 0.00053 30.9 12.0 101 86-194 26-133 (254)
106 KOG1583 UDP-N-acetylglucosamin 84.6 16 0.00036 32.2 10.5 139 52-194 160-313 (330)
107 PF02694 UPF0060: Uncharacteri 84.1 9.8 0.00021 28.2 7.6 46 304-349 59-104 (107)
108 KOG1442 GDP-fucose transporter 81.5 4.8 0.0001 35.4 6.1 124 70-194 199-326 (347)
109 PRK02237 hypothetical protein; 77.8 26 0.00057 26.1 9.3 46 304-349 61-106 (109)
110 KOG3912 Predicted integral mem 77.7 5.6 0.00012 35.0 5.3 58 291-348 101-158 (372)
111 KOG1582 UDP-galactose transpor 74.3 25 0.00055 31.0 8.3 112 88-199 221-336 (367)
112 PF04342 DUF486: Protein of un 73.5 3.4 7.3E-05 30.5 2.5 31 315-345 75-105 (108)
113 KOG4831 Unnamed protein [Funct 72.4 4.1 8.9E-05 30.0 2.7 63 131-193 60-123 (125)
114 PF04342 DUF486: Protein of un 67.3 49 0.0011 24.6 9.5 53 140-192 52-105 (108)
115 COG3169 Uncharacterized protei 66.8 14 0.0003 26.8 4.4 35 312-346 79-113 (116)
116 PF02694 UPF0060: Uncharacteri 63.3 13 0.00027 27.7 3.7 39 158-196 66-104 (107)
117 PF05297 Herpes_LMP1: Herpesvi 62.2 2.5 5.5E-05 37.0 0.0 109 145-256 45-158 (381)
118 KOG2766 Predicted membrane pro 60.7 2.2 4.7E-05 37.0 -0.6 66 283-348 85-150 (336)
119 COG2116 FocA Formate/nitrite f 49.4 1.8E+02 0.0039 25.8 9.2 64 235-298 110-181 (265)
120 PF06379 RhaT: L-rhamnose-prot 49.1 2.2E+02 0.0047 26.2 24.3 228 119-347 69-339 (344)
121 TIGR03810 arg_ornith_anti argi 49.0 2.5E+02 0.0055 27.0 13.4 22 331-352 412-433 (468)
122 PF07444 Ycf66_N: Ycf66 protei 45.2 20 0.00043 25.5 2.2 27 327-353 4-30 (84)
123 COG1742 Uncharacterized conser 42.2 1.4E+02 0.0031 22.1 6.6 45 306-350 62-106 (109)
124 PF05977 MFS_3: Transmembrane 41.8 3.5E+02 0.0077 26.6 16.2 25 299-323 343-367 (524)
125 COG1742 Uncharacterized conser 34.2 2E+02 0.0042 21.4 8.7 38 159-196 68-105 (109)
126 PRK10435 cadB lysine/cadaverin 33.2 4.3E+02 0.0093 25.1 11.7 29 330-358 405-433 (435)
127 TIGR01167 LPXTG_anchor LPXTG-m 32.5 44 0.00096 18.7 2.0 15 328-342 10-24 (34)
128 TIGR02865 spore_II_E stage II 32.2 6E+02 0.013 26.5 16.5 44 150-193 11-54 (764)
129 COG4657 RnfA Predicted NADH:ub 32.0 2.8E+02 0.006 22.5 10.6 59 167-225 89-154 (193)
130 COG4858 Uncharacterized membra 32.0 3E+02 0.0065 22.9 7.3 14 64-77 108-121 (226)
131 TIGR00905 2A0302 transporter, 31.8 4.7E+02 0.01 25.1 17.2 24 331-354 417-440 (473)
132 KOG1443 Predicted integral mem 31.5 4E+02 0.0087 24.2 13.0 56 138-193 258-313 (349)
133 COG3169 Uncharacterized protei 31.1 2.1E+02 0.0046 20.9 11.5 30 165-194 85-114 (116)
134 PRK02237 hypothetical protein; 30.7 2.3E+02 0.005 21.2 10.8 39 158-196 68-106 (109)
135 PF08627 CRT-like: CRT-like; 30.0 1.8E+02 0.004 22.4 5.4 52 52-104 53-104 (130)
136 PF07168 Ureide_permease: Urei 29.6 45 0.00097 30.0 2.4 134 209-347 2-145 (336)
137 PF06946 Phage_holin_5: Phage 28.1 2.4E+02 0.0052 20.5 5.6 62 294-355 22-87 (93)
138 PF08693 SKG6: Transmembrane a 26.6 50 0.0011 19.8 1.5 18 334-351 21-38 (40)
139 KOG3817 Uncharacterized conser 26.0 1.8E+02 0.004 26.8 5.6 78 72-157 205-285 (452)
140 PF06123 CreD: Inner membrane 25.9 6E+02 0.013 24.4 13.8 57 169-227 317-375 (430)
141 COG3086 RseC Positive regulato 25.5 1.6E+02 0.0035 23.3 4.6 28 297-324 69-96 (150)
142 PF01102 Glycophorin_A: Glycop 25.0 53 0.0012 25.2 1.9 19 335-354 76-94 (122)
143 COG3086 RseC Positive regulato 24.0 1.6E+02 0.0034 23.4 4.2 22 149-170 74-95 (150)
144 KOG4831 Unnamed protein [Funct 23.7 1.2E+02 0.0027 22.5 3.4 52 294-345 70-122 (125)
145 cd01324 cbb3_Oxidase_CcoQ Cyto 23.7 73 0.0016 19.9 2.0 20 335-354 18-37 (48)
146 KOG1623 Multitransmembrane pro 23.4 1.8E+02 0.0039 25.4 5.0 74 172-246 92-171 (243)
147 PRK02935 hypothetical protein; 22.4 2.1E+02 0.0046 21.2 4.4 23 329-351 41-63 (110)
148 PRK11715 inner membrane protei 22.2 7.1E+02 0.015 23.9 13.8 55 171-227 325-381 (436)
149 PF05545 FixQ: Cbb3-type cytoc 22.1 89 0.0019 19.4 2.2 20 335-354 17-36 (49)
150 COG3247 HdeD Uncharacterized c 21.7 4.7E+02 0.01 21.7 15.8 40 171-210 15-58 (185)
151 PF07123 PsbW: Photosystem II 21.4 1.2E+02 0.0026 23.7 3.1 28 199-226 102-129 (138)
152 PF09656 PGPGW: Putative trans 20.8 2.4E+02 0.0053 18.1 5.0 44 178-226 4-47 (53)
153 PF00909 Ammonium_transp: Ammo 20.2 7.3E+02 0.016 23.4 20.1 77 170-250 244-322 (399)
No 1
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=2.2e-38 Score=290.81 Aligned_cols=295 Identities=25% Similarity=0.371 Sum_probs=251.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccc-cHHHHHHHHHHHH
Q 018307 53 PHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHIL-SRKQFLKIFALSA 131 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 131 (358)
..++....++.|+..++...+.||+++++ +|+|+.++++|++++.+++.++.. .+.++.++.. .+.+++..++.|+
T Consensus 46 ~~~~~~~~~~~wy~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~llp~gl 122 (350)
T PTZ00343 46 FKWKLALLFLTWYALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIKSLKLFLKNFLPQGL 122 (350)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999998 888999999999999877655543 2333323332 4567889999999
Q ss_pred HHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccccchHHHHHHHHHH
Q 018307 132 IFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEPLFHLFGFLVCVGS 211 (358)
Q Consensus 132 ~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~a 211 (358)
++...+...+.|+++++++.++++++++|+++++++++++|||++++++.+++++++|+.+.+.+|.+.+..|++++++|
T Consensus 123 ~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s 202 (350)
T PTZ00343 123 CHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLS 202 (350)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHH
Confidence 99887888889999999999999999999999999999999999999999999999999999988888888999999999
Q ss_pred HHHHHHHHHHHHHhhcccC---CCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHh-----hhc-cchHHHHHHHHH
Q 018307 212 TAGRALKSVVQGILLTSEA---EKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIE-----KAS-EDRFVLFLLLGN 282 (358)
Q Consensus 212 ~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~ 282 (358)
++++++++++.|+.+++++ ++.++.+...++.+++.++++|+....|+........ ... .....+..++.+
T Consensus 203 ~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s 282 (350)
T PTZ00343 203 NLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFS 282 (350)
T ss_pred HHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHH
Confidence 9999999999999984322 2467888888889999999999988766533221110 011 112344567778
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhc
Q 018307 283 ATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAK 350 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~ 350 (358)
++..+++|.+.++++++++|++.++.++++|++++++|++++||++++.+++|.++++.|+++|++.|
T Consensus 283 ~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 283 GVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 88899999999999999999999999999999999999999999999999999999999999998753
No 2
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=1.8e-37 Score=280.96 Aligned_cols=294 Identities=25% Similarity=0.375 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHH
Q 018307 56 FTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSF 135 (358)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (358)
+..+.+..|++.++..+++||+++++ +++|+.+++.|+.++.+++.+... .+.++++ ..++++++.+++.|++++.
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~g~~~~~ 77 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLNV--FPYPYFKTLISLAVGSLYCLLSWS-SGLPKRL-KISSALLKLLLPVAIVHTI 77 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHH-hCCCCCC-CCCHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999987 888999999999998877665532 2222222 2457789999999999999
Q ss_pred HHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHH
Q 018307 136 SVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEPLFHLFGFLVCVGSTAGR 215 (358)
Q Consensus 136 ~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~ 215 (358)
+..+.|.+++|+++++++++++++|+++++++++++|||++++++.+++++++|+.+...++.+.+..|+++++++++++
T Consensus 78 ~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~ 157 (302)
T TIGR00817 78 GHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITF 157 (302)
T ss_pred HHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887666677788999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHH--HHhh--hccchHHHHHHHHHH-HHHHHHH
Q 018307 216 ALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAAT--TIEK--ASEDRFVLFLLLGNA-TVAYLVN 290 (358)
Q Consensus 216 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~-~~~~~~~ 290 (358)
+++.++.||.. ++++.|+.+++.|++..+.+.++|.....|++.... +... .......+...+..+ .+...+|
T Consensus 158 a~~~v~~k~~~--~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (302)
T TIGR00817 158 VSRNIFSKKAM--TIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQ 235 (302)
T ss_pred HHHHHHHHHhh--ccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 99999999986 334789999999999999999999987766533211 1110 011112233232333 2444566
Q ss_pred HHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhcccccc
Q 018307 291 LTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRSKV 355 (358)
Q Consensus 291 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~~~~ 355 (358)
...+.+++++||++.++.++++|++++++|++++||+++..+++|.++++.|+++|++.|.||++
T Consensus 236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~ 300 (302)
T TIGR00817 236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPK 300 (302)
T ss_pred HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcC
Confidence 67778999999999999999999999999999999999999999999999999999988776654
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-38 Score=276.54 Aligned_cols=301 Identities=44% Similarity=0.670 Sum_probs=268.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHH
Q 018307 53 PHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAI 132 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (358)
+.....+.+..|++++++..+.||++++.++||+|++++.++...+.+....... .+..+..+..++..++..+++|+.
T Consensus 14 ~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~-l~~~~~~~~~~~~~~~~llpl~~~ 92 (316)
T KOG1441|consen 14 KILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKV-LKLVPPSKISSKLPLRTLLPLGLV 92 (316)
T ss_pred hhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHH-hcCCCCCccccccchHHHHHHHHH
Confidence 5678888899999999999999999999888999999999977777666655554 666666666677899999999999
Q ss_pred HHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccccchHHHHHHHHHHH
Q 018307 133 FSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEPLFHLFGFLVCVGST 212 (358)
Q Consensus 133 ~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~a~ 212 (358)
++++.++.|.+++++|++++|++|++.|+++.++++++.+|++++..+.+++.++.||.+.+..|.++++.|...++++.
T Consensus 93 ~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~ 172 (316)
T KOG1441|consen 93 FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISN 172 (316)
T ss_pred HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHH-HHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 018307 213 AGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILL-PFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAYLVNL 291 (358)
Q Consensus 213 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (358)
+..++++++.|+.+++++++.|+.+++.|+++++.+.++ |+....|++.. .......++...+..++.+ ++++++|.
T Consensus 173 ~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s-v~~f~~Nl 250 (316)
T KOG1441|consen 173 LAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVTFLILLLNS-VLAFLLNL 250 (316)
T ss_pred HHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchhhHHHHHHH-HHHHHHHH
Confidence 999999999999997777899999999999999999999 88877776554 1111212333344444444 99999999
Q ss_pred HHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccccccc
Q 018307 292 TNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRSKVT 356 (358)
Q Consensus 292 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~~~~~ 356 (358)
..|+++++++|++.++.+.+|.++.+..|+++|+|+.++.+.+|+++.+.|+++|++.|.++++.
T Consensus 251 s~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 251 SAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999887664
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=6e-30 Score=234.04 Aligned_cols=292 Identities=14% Similarity=0.113 Sum_probs=221.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHH
Q 018307 54 HIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIF 133 (358)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (358)
.....+.++.--.+...+..+.|..++. +.+ |..+.++|+.++++++.++.+..++.++.+..+++++......+++.
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~-G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSK-GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHC-CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 3445566666667777788889999966 788 99999999999999988877643322222222355667777777776
Q ss_pred HHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHH------hccccchHHHHHHHHHHHhhhhhccccc---------
Q 018307 134 SFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLI------TCKKESAEVYCALMPVVFGIVLASNSEP--------- 198 (358)
Q Consensus 134 ~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~------~~e~~~~~~~~~~~~~~~Gv~l~~~~~~--------- 198 (358)
...+.+.+.+++|++++.++++.++.|++++++++++ +|||.++++++|++++++|+.++...+.
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~ 168 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSP 168 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccc
Confidence 6667789999999999999999999999999999988 6999999999999999999998763210
Q ss_pred ---------------cch-HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCH-HHHHHHHHHHHHHHHHHHHHHhcchh
Q 018307 199 ---------------LFH-LFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHS-MNLLLYMAPMSALILLPFTLYIEGNV 261 (358)
Q Consensus 199 ---------------~~~-~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (358)
..+ ..|+++.++++++|++|.+++|+.. .++++ ....+++..++.+.+.+.....++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~----~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~ 244 (358)
T PLN00411 169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIM----SEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNN 244 (358)
T ss_pred ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCcHhHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 112 4599999999999999999999986 33433 45566777777666666555544322
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHH
Q 018307 262 AATTIEKASEDRFVLFLLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIM 341 (358)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~ 341 (358)
...+ ...++...+. ++..++...+.+..+++++++.+|.+++++.+++|++++++|++++||++++.+++|.++++.
T Consensus 245 ~~~~--~~~~~~~~~~-i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~ 321 (358)
T PLN00411 245 PSVW--IIHFDITLIT-IVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITL 321 (358)
T ss_pred cccc--eeccchHHHH-HHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 2111 1111222222 333444444555678889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccc
Q 018307 342 GVVLYSEAKKRSK 354 (358)
Q Consensus 342 g~~~~~~~~~~~~ 354 (358)
|+++.++.++||.
T Consensus 322 Gv~l~~~~~~~~~ 334 (358)
T PLN00411 322 GFYAVMWGKANEE 334 (358)
T ss_pred HHHHHHhhhhhhh
Confidence 9999987766543
No 5
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.98 E-value=1.3e-29 Score=229.22 Aligned_cols=286 Identities=21% Similarity=0.303 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHhhhh
Q 018307 63 SWYLSNIGVLLLNKYLLSFYGYR-YPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVVCGN 141 (358)
Q Consensus 63 ~~~~~~~~~~~~~K~~~~~~~~~-~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (358)
..+++.....++.+.+.+..... +|.++++.|++...+...+.....+ .+..++..++++++.++++.++..+.|
T Consensus 7 ~i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF08449_consen 7 GIFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK----FPKSRKIPLKKYAILSFLFFLASVLSN 82 (303)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----ccCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 33344444566677777653333 7999999999999888777766333 112355677888999999999999999
Q ss_pred ccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcccccc----c------hHHHHHHHHHH
Q 018307 142 TSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEPL----F------HLFGFLVCVGS 211 (358)
Q Consensus 142 ~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~----~------~~~G~~~~l~a 211 (358)
.+++|+|.++.+++|++.|+++++++.+++|||++++++.++++.++|+++...++.. . ...|+++.+++
T Consensus 83 ~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~s 162 (303)
T PF08449_consen 83 AALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLS 162 (303)
T ss_pred HHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998855421 1 12399999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 018307 212 TAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAYLVNL 291 (358)
Q Consensus 212 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (358)
.+++|...+++||.+ ++++.++.++++|.+.++.+..++.....+.....+........+..+..++..++.++..+.
T Consensus 163 l~~~a~~~~~qe~~~--~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~ 240 (303)
T PF08449_consen 163 LLLDAFTGVYQEKLF--KKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQF 240 (303)
T ss_pred HHHHHHHHHHHHHHH--HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 567889999999999999998887776632111112222222345577788888888888888
Q ss_pred HHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccccc
Q 018307 292 TNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRSK 354 (358)
Q Consensus 292 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~~~ 354 (358)
..+.++++.||++.++++++|.+.++++++++||+++++.+|+|.++++.|..+|.+.|+|++
T Consensus 241 ~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 241 FIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 889999999999999999999999999999999999999999999999999999999887764
No 6
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-29 Score=218.61 Aligned_cols=300 Identities=25% Similarity=0.309 Sum_probs=259.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHH
Q 018307 53 PHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAI 132 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (358)
.....+...+.++.++..+++.||++++.|+||--+++...|.+.+.+.+....+ .|..+.++ .+++..|+++|.+++
T Consensus 9 ~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~-~~lv~~~~-l~~~~~kk~~P~~~l 86 (314)
T KOG1444|consen 9 KQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKR-LGLVNFRP-LDLRTAKKWFPVSLL 86 (314)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH-hceeecCC-cChHHHHHHccHHHH
Confidence 4556678889999999999999999999977775666667999988888776655 55555544 457788899999999
Q ss_pred HHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccccchHHHHHHHHHHH
Q 018307 133 FSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEPLFHLFGFLVCVGST 212 (358)
Q Consensus 133 ~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~a~ 212 (358)
+..+.+....+++|++++++++++..+|+++++.+..++|.|++...|.++..+.+|.......|.+++..|+.+.....
T Consensus 87 f~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~ 166 (314)
T KOG1444|consen 87 FVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANC 166 (314)
T ss_pred HHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 018307 213 AGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAYLVNLT 292 (358)
Q Consensus 213 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (358)
++.+.+.++.|+.. +..+.+.+.+++|+++.+.+.+.....+.++.+..............+..+.++|+++++.+++
T Consensus 167 ~~~a~~~v~~kk~v--d~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~ 244 (314)
T KOG1444|consen 167 LTTAAFVVYVKKSV--DSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYT 244 (314)
T ss_pred HHHHHHHHHHHHhh--ccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 6677889999999999999998888877766541111111233467788899999999999999
Q ss_pred HHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccccccc
Q 018307 293 NFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRSKVT 356 (358)
Q Consensus 293 ~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~~~~~ 356 (358)
.++|.+..|+++.++++......+.+.+.+++|+++++...+|..+.+.|..+|++.+.|+|+.
T Consensus 245 s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 245 SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 9999999999999999966666666666777778899999999999999999999998777654
No 7
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.96 E-value=1.6e-26 Score=208.08 Aligned_cols=274 Identities=14% Similarity=0.124 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHH-H
Q 018307 56 FTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIF-S 134 (358)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 134 (358)
..+...++|... ....|...++ .+ |..++++|+..+.+++.++....+. + ..++++++.....+++. .
T Consensus 12 ~~~~~~~iWg~~----~~~~K~~~~~--~~-p~~~~~~R~~~a~l~ll~~~~~~~~-~---~~~~~~~~~~~~~g~~~~~ 80 (292)
T PRK11272 12 ALFALYIIWGST----YLVIRIGVES--WP-PLMMAGVRFLIAGILLLAFLLLRGH-P---LPTLRQWLNAALIGLLLLA 80 (292)
T ss_pred HHHHHHHHHhhH----HHHHHHHhcc--CC-HHHHHHHHHHHHHHHHHHHHHHhCC-C---CCcHHHHHHHHHHHHHHHH
Confidence 344455555554 5556988876 66 9999999999999888777653321 1 12455666666667654 5
Q ss_pred HHHhhhhccc-cccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccc-cccchHHHHHHHHHHH
Q 018307 135 FSVVCGNTSL-RYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNS-EPLFHLFGFLVCVGST 212 (358)
Q Consensus 135 ~~~~~~~~al-~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~-~~~~~~~G~~~~l~a~ 212 (358)
.++.+.+++. ++++++.++++.++.|+++.+++.+ +|||++++++++++++++|+.++..+ +.+.+..|++++++++
T Consensus 81 ~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~ 159 (292)
T PRK11272 81 VGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIAS 159 (292)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHH
Confidence 6677888888 9999999999999999999999975 69999999999999999999988644 3345567999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHH-HHHHHH
Q 018307 213 AGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATV-AYLVNL 291 (358)
Q Consensus 213 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 291 (358)
++||.+.++.||.. .+ ++.....++...+.+.+.+.....+.+.. ...+...|..++..++. ....+.
T Consensus 160 ~~~a~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~l~i~~s~~~~~ 228 (292)
T PRK11272 160 ASWAFGSVWSSRLP----LP-VGMMAGAAEMLAAGVVLLIASLLSGERLT------ALPTLSGFLALGYLAVFGSIIAIS 228 (292)
T ss_pred HHHHHHHHHHHhcC----CC-cchHHHHHHHHHHHHHHHHHHHHcCCccc------ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999863 22 34556678888888777776654332110 01122334444444444 334445
Q ss_pred HHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccc
Q 018307 292 TNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKR 352 (358)
Q Consensus 292 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~ 352 (358)
.++.++++.++.+.++..+++|+++++++++++||++++.+++|.++++.|+++.++.++|
T Consensus 229 l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 229 AYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788999999999999999999999999999999999999999999999999998775554
No 8
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=4.5e-27 Score=210.54 Aligned_cols=274 Identities=17% Similarity=0.166 Sum_probs=222.0
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHhhhhccccccchh
Q 018307 71 VLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVVCGNTSLRYLPVS 150 (358)
Q Consensus 71 ~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 150 (358)
....++.+-++ +.+.|.+.+++.++...++.......++..++.....+.++++.+..+++...++.+.+.|++|++.+
T Consensus 28 t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvt 106 (334)
T PF06027_consen 28 TGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVT 106 (334)
T ss_pred HHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHh
Confidence 34445555555 78889999999998777665555443322222122234566777788999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccc---------cchHHHHHHHHHHHHHHHHHHHH
Q 018307 151 FNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEP---------LFHLFGFLVCVGSTAGRALKSVV 221 (358)
Q Consensus 151 ~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~---------~~~~~G~~~~l~a~~~~a~~~v~ 221 (358)
.++++.+++.+++++++++++|+|+++.+++|++++++|++++...|. +....|++++++++++||+++++
T Consensus 107 S~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~ 186 (334)
T PF06027_consen 107 SVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVL 186 (334)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998875432 23478999999999999999999
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 018307 222 QGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAYLVNLTNFLVTKHTS 301 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (358)
+|+.. ++.+..+.+.+..+++.++..+....+|....... .++...+.+++..+++-+..+...-..++..+
T Consensus 187 ~E~~v----~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~----~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ss 258 (334)
T PF06027_consen 187 EEKLV----KKAPRVEFLGMLGLFGFIISGIQLAILERSGIESI----HWTSQVIGLLVGYALCLFLFYSLVPIVLRMSS 258 (334)
T ss_pred HHHhc----ccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhcc----CCChhhHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99997 34578899999999999998888887776554322 23445556666666666666666667899999
Q ss_pred hhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhcccc
Q 018307 302 ALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRS 353 (358)
Q Consensus 302 ~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~~ 353 (358)
|+..++-....++.+++++++++|+++++..++|.++++.|+++|+..++++
T Consensus 259 At~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 259 ATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred cceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 9999998888999999999999999999999999999999999998765543
No 9
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.96 E-value=7.6e-27 Score=210.46 Aligned_cols=271 Identities=14% Similarity=0.068 Sum_probs=200.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHH
Q 018307 53 PHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAI 132 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (358)
..+.....+++|...+.. .|...++ +| |..+.++|+..+.+++.++.. +++ .++..++..+..++.
T Consensus 5 ~~l~~l~a~~~Wg~~~~~----~k~~~~~--~~-P~~~~~~R~~~a~l~l~~~~~----~~~---~~~~~~~~~~~~~l~ 70 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGL----IRGVSES--LG-PVGGAAMIYSVSGLLLLLTVG----FPR---LRQFPKRYLLAGGLL 70 (295)
T ss_pred hhHHHHHHHHHHHHHHHH----HHHHHcc--CC-hHHHHHHHHHHHHHHHHHHcc----ccc---cccccHHHHHHHhHH
Confidence 566777888888877555 5988887 77 999999999999888775431 111 112223344455555
Q ss_pred HHHHHhhhhcccc----ccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccc----------
Q 018307 133 FSFSVVCGNTSLR----YLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEP---------- 198 (358)
Q Consensus 133 ~~~~~~~~~~al~----~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~---------- 198 (358)
+..+..+.+.+++ +.+++.+.++.++.|+++.+++++++|||++++++++++++++|++++..++.
T Consensus 71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~ 150 (295)
T PRK11689 71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINN 150 (295)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhc
Confidence 5666777776665 46788889999999999999999999999999999999999999998875432
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHH
Q 018307 199 -LFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLF 277 (358)
Q Consensus 199 -~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (358)
..+..|++++++++++||.|.++.||.. ++.++..... ..+.+.+.+.... ++... ...+...|.
T Consensus 151 ~~~~~~G~~~~l~aa~~~A~~~v~~k~~~----~~~~~~~~~~---~~~~~~l~~~~~~-~~~~~------~~~~~~~~~ 216 (295)
T PRK11689 151 IASNPLSYGLAFIGAFIWAAYCNVTRKYA----RGKNGITLFF---ILTALALWIKYFL-SPQPA------MVFSLPAII 216 (295)
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHhhcc----CCCCchhHHH---HHHHHHHHHHHHH-hcCcc------ccCCHHHHH
Confidence 1234699999999999999999999974 3445554322 2233333333222 22111 112233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhcc
Q 018307 278 LLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKK 351 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~ 351 (358)
.++..++.....+..+++++++.++...+++.+++|+++++++++++||+++..+++|.++++.|+++....++
T Consensus 217 ~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 217 KLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 44455555666677889999999999999999999999999999999999999999999999999987765443
No 10
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.96 E-value=5.6e-28 Score=205.31 Aligned_cols=295 Identities=19% Similarity=0.360 Sum_probs=256.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhccc---ccccccHHHHHHHHH
Q 018307 52 SPHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVP---IQHILSRKQFLKIFA 128 (358)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~ 128 (358)
..+...+.++.+|++++++.++++|+.-.+ |++|++++.+|.++-........+..+... +....+++..++..|
T Consensus 12 ~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~--f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aP 89 (349)
T KOG1443|consen 12 MNRVLTLALVLLYYFLSIGLTFYFKWLTKN--FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAP 89 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcC--cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhh
Confidence 456777778899999999999999888876 888999999999988877766655433222 234557888899999
Q ss_pred HHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccccchHHHHHHH
Q 018307 129 LSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEPLFHLFGFLVC 208 (358)
Q Consensus 129 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~ 208 (358)
.++..++...+.|++++|++.+.+++.|+++++|+.+++.++.-||+++.-...+.++..|+.+.+..+.+++..|..++
T Consensus 90 talata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv 169 (349)
T KOG1443|consen 90 TALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLV 169 (349)
T ss_pred hhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccC-CCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHh---hhcc--chHHHHHHHHH
Q 018307 209 VGSTAGRALKSVVQGILLTSEA-EKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIE---KASE--DRFVLFLLLGN 282 (358)
Q Consensus 209 l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~ 282 (358)
.+++++.++++.+.|.++++.+ .+-+|...+....+...+.++|..+.+||+....+.. .... .......+...
T Consensus 170 ~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~ 249 (349)
T KOG1443|consen 170 LAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLG 249 (349)
T ss_pred HHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHH
Confidence 9999999999999999997544 5568999999999999999999999999877542222 1111 23455667788
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhh
Q 018307 283 ATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSE 348 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~ 348 (358)
+..+++.-.+-+..+.+++..+.++.+..+.+.+.+++.++.+|+++..+|+|..+...|+..|..
T Consensus 250 g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 250 GLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 888998888899999999999999999999999999999999999999999999999999999943
No 11
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=6e-26 Score=205.10 Aligned_cols=280 Identities=13% Similarity=0.192 Sum_probs=200.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHH
Q 018307 53 PHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAI 132 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (358)
+.+..++..++|...+.. .|...++ ++ |..+.++|+.++++++.++.. + ++. .++..+..++.
T Consensus 5 ~~l~~l~~~~~Wg~~~~~----~k~~~~~--~~-p~~~~~~R~~~a~~~l~~~~~--~--~~~------~~~~~~~~g~~ 67 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVV----IKVGLHN--MP-PLMLAGLRFMLVAFPAIFFVA--R--PKV------PLNLLLGYGLT 67 (299)
T ss_pred HHHHHHHHHHHHhhhHHH----HHHHHhc--CC-HHHHHHHHHHHHHHHHHHHhc--C--CCC------chHHHHHHHHH
Confidence 445567777777777555 5888876 77 999999999988766554432 1 111 12233344443
Q ss_pred H-HHHHhhhhccccc-cchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcccc---ccchHHHHHH
Q 018307 133 F-SFSVVCGNTSLRY-LPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSE---PLFHLFGFLV 207 (358)
Q Consensus 133 ~-~~~~~~~~~al~~-~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~---~~~~~~G~~~ 207 (358)
. .....+.+.++++ .|++.+.++.++.|+++.+++++++|||++++++++++++++|+.++..++ .+.+..|+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l 147 (299)
T PRK11453 68 ISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFML 147 (299)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHH
Confidence 3 3445566778887 689999999999999999999999999999999999999999999887432 2234579999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHH
Q 018307 208 CVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAY 287 (358)
Q Consensus 208 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (358)
+++++++|+.+.++.|+..+ +....+......++...+.+.........+++.... ......+...|..++..++.+.
T Consensus 148 ~l~aal~~a~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~i~~t 225 (299)
T PRK11453 148 TLAAAFSWACGNIFNKKIMS-HSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI-HSLVTIDMTTILSLMYLAFVAT 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh-hhhccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999752 112223334455555555544444444444332110 1111223344555555555444
Q ss_pred -HHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhcc
Q 018307 288 -LVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKK 351 (358)
Q Consensus 288 -~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~ 351 (358)
..+..++..+++.++.+.++..+++|+++.+++++++||+++..+++|.++++.|+++..+.++
T Consensus 226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 3445577889999999999999999999999999999999999999999999999998776654
No 12
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.95 E-value=1.1e-25 Score=203.03 Aligned_cols=276 Identities=9% Similarity=0.089 Sum_probs=193.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc-c-ccccHHHHHHHHHHH
Q 018307 53 PHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPI-Q-HILSRKQFLKIFALS 130 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 130 (358)
..+..++..++|... ....|.. .+ .+ |..++++|+.++.+++.++....++.+. + +..+++.+...+..+
T Consensus 9 g~~~~l~a~~~wg~~----~~~~k~~-~~--~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (296)
T PRK15430 9 GVLLALAAYFIWGIA----PAYFKLI-YY--VP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSA 80 (296)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHh-cC--CC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHH
Confidence 344444555555444 5556875 34 66 9999999999998877666543222111 0 011223333334555
Q ss_pred HHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccccchHHHHHHHHH
Q 018307 131 AIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEPLFHLFGFLVCVG 210 (358)
Q Consensus 131 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~ 210 (358)
+....++.+.+++++++|++.++++.++.|+++.+++++++|||+++++|.+++++++|++++..++.+. ..++++
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l~ 156 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIALG 156 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHHH
Confidence 6677889999999999999999999999999999999999999999999999999999999886433222 246888
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 018307 211 STAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAYLVN 290 (358)
Q Consensus 211 a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (358)
++++||.|.+..|+.. ++...+......+....+.+...+.. +.+ .. .........+..++..++.+...+
T Consensus 157 aa~~~a~~~i~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~---~~~~~~~~~~~~~~~~g~~t~i~~ 227 (296)
T PRK15430 157 LAFSFAFYGLVRKKIA--VEAQTGMLIETMWLLPVAAIYLFAIA---DSS-TS---HMGQNPMSLNLLLIAAGIVTTVPL 227 (296)
T ss_pred HHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHHHHHHHHHHHc---cCC-cc---cccCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999998863 11222333334444444443322211 111 00 000111122344444455555667
Q ss_pred HHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhh
Q 018307 291 LTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEA 349 (358)
Q Consensus 291 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~ 349 (358)
.+++.++++.++..++.+.+++|+++.++|++++||++++.+++|+++++.|+.+....
T Consensus 228 ~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 228 LCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999998888877654
No 13
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.95 E-value=7e-25 Score=197.50 Aligned_cols=271 Identities=16% Similarity=0.141 Sum_probs=199.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHH
Q 018307 53 PHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAI 132 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (358)
.....++.+++|. ......|+..++ ++ |..+.++|++++.+++.++.. .+ ++ + .++++++..+..+++
T Consensus 13 ~~~~~~la~~~~~----~~~~~~K~~~~~--~~-~~~~~~~R~~~a~l~l~~~~~-~~-~~--~-~~~~~~~~~~~~g~~ 80 (293)
T PRK10532 13 PILLLLIAMASIQ----SGASLAKSLFPL--VG-APGVTALRLALGTLILIAIFK-PW-RL--R-FAKEQRLPLLFYGVS 80 (293)
T ss_pred HHHHHHHHHHHHH----hhHHHHHHHHHH--cC-HHHHHHHHHHHHHHHHHHHHh-HH-hc--c-CCHHHHHHHHHHHHH
Confidence 4444555555554 445568999987 66 999999999999888876643 11 11 1 235566677778888
Q ss_pred HHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccc---cccchHHHHHHHH
Q 018307 133 FSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNS---EPLFHLFGFLVCV 209 (358)
Q Consensus 133 ~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~---~~~~~~~G~~~~l 209 (358)
....+.+.+++++++|++.++++..+.|+++.+++ +|++.+ +.++.++++|+.++... ..+.+..|+++++
T Consensus 81 ~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l 154 (293)
T PRK10532 81 LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALAL 154 (293)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHH
Confidence 88888889999999999999999999999998876 355554 45567778999876522 2233567999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHH-HHH
Q 018307 210 GSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATV-AYL 288 (358)
Q Consensus 210 ~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 288 (358)
+++++||.|.+..|+.. ++.++... .++..++++++.|+....++.. ..+...+...+..++. ...
T Consensus 155 ~aa~~~a~~~v~~r~~~----~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 155 GAGACWAIYILSGQRAG----AEHGPATV-AIGSLIAALIFVPIGALQAGEA--------LWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred HHHHHHHHHHHHHHHHh----ccCCchHH-HHHHHHHHHHHHHHHHHccCcc--------cCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999985 34455554 4566777777777665432210 0122223333333443 334
Q ss_pred HHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccccc
Q 018307 289 VNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRSK 354 (358)
Q Consensus 289 ~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~~~ 354 (358)
.+..+++++++.++.+++++.+++|+++.++|++++||++++.+++|.++++.|.+.+++..+||.
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~ 287 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREP 287 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 445678899999999999999999999999999999999999999999999999999987665543
No 14
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.95 E-value=9e-25 Score=193.92 Aligned_cols=252 Identities=18% Similarity=0.170 Sum_probs=196.3
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHH-HHHHHHHhhhhccccccchh
Q 018307 72 LLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALS-AIFSFSVVCGNTSLRYLPVS 150 (358)
Q Consensus 72 ~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~~~~~ 150 (358)
.+..|+.+++ +.| |..+.+.|++.+.+++.+... .+ +++++++..+..+ +...++..+.++|++++|++
T Consensus 5 ~~~~k~~~~~-~~~-~~~~~~~r~~~~~l~l~~~~~-~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~ 74 (260)
T TIGR00950 5 GVVIGQYLEG-QVP-LYFAVFRRLIFALLLLLPLLR-RR-------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVG 74 (260)
T ss_pred HHHHHHHHhc-CCC-HHHHHHHHHHHHHHHHHHHHH-hc-------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 4456998876 345 889999999888777766544 22 1233444444444 55688899999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018307 151 FNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSE-PLFHLFGFLVCVGSTAGRALKSVVQGILLTSE 229 (358)
Q Consensus 151 ~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~-~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~ 229 (358)
.++++.++.|+++++++.+++|||++++++.++.++++|+.++..++ .+.+..|+.++++++++|+.+.++.|+.. +
T Consensus 75 ~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~--~ 152 (260)
T TIGR00950 75 EAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLV--K 152 (260)
T ss_pred hhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHh--h
Confidence 99999999999999999999999999999999999999999876443 34567899999999999999999999985 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHH-HHHHHHHHHHHHhccchhHHHHh
Q 018307 230 AEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATV-AYLVNLTNFLVTKHTSALTLQVL 308 (358)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~ 308 (358)
+.+.++.....+....+.+.+.+.....+.+.. .+...+..++..+++ ....+..+++++++.++.+++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~ 224 (260)
T TIGR00950 153 KEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQ--------ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASIL 224 (260)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 233334455556778888887777665432211 123344444444444 34555668889999999999999
Q ss_pred hhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHH
Q 018307 309 GNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGV 343 (358)
Q Consensus 309 ~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~ 343 (358)
.+++|+++.+++++++||++++.+++|.++++.|+
T Consensus 225 ~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 225 ALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999886
No 15
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-27 Score=199.89 Aligned_cols=300 Identities=19% Similarity=0.235 Sum_probs=253.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCchHHHHHHHHHHHHHHHHHHHHHhhcc----ccccc-ccHHHHHHH
Q 018307 54 HIFTALIIASWYLSNIGVLLLNKYLLSF--YGYRYPIFLTMLHMISCAVYSYVAIHFLELV----PIQHI-LSRKQFLKI 126 (358)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~K~~~~~--~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~----~~~~~-~~~~~~~~~ 126 (358)
..+.......+...++.+.+.||++++. ...+.|.++++.|.++...++..+-...... ..+.. .+-+..+++
T Consensus 26 ~~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~v 105 (347)
T KOG1442|consen 26 AKQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQV 105 (347)
T ss_pred hhchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhh
Confidence 4445555666778889999999999986 3467799999999999888877665432221 11111 356677889
Q ss_pred HHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcccc---ccchHH
Q 018307 127 FALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSE---PLFHLF 203 (358)
Q Consensus 127 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~---~~~~~~ 203 (358)
+++++.+.++..+.|++++|++++++++-++.+.+|+.+++++++|+|-+..-..++.++++|..+-+..| ...++.
T Consensus 106 lplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~ 185 (347)
T KOG1442|consen 106 LPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWI 185 (347)
T ss_pred cchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888766 466789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHH
Q 018307 204 GFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNA 283 (358)
Q Consensus 204 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (358)
|.++++.++++-|+..++.||.. .+.+-.-+.+..|+++.+.++.+|...+.+. ...-+..+..+...+|.++.++|
T Consensus 186 GvifGVlaSl~vAlnaiytkk~l--~~v~~~iw~lt~ynnv~a~lLflpll~lnge-~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 186 GVIFGVLASLAVALNAIYTKKVL--PPVGDCIWRLTAYNNVNALLLFLPLLILNGE-FQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred hhHHHHHHHHHHHHHHHhhheec--ccccCeehhhHHHHHHHHHHHHHHHHHHcch-HHHHcCcccchHHHHHHHHHHHH
Confidence 99999999999999999999887 3344457899999999999999998776533 22222223445678899999999
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccccccc
Q 018307 284 TVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRSKVT 356 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~~~~~ 356 (358)
+++|..++...+-+|.+||++..+-++.|.....++++.+++|..+..-|-|-+++++|...|++.|++++++
T Consensus 263 lfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 263 LFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred HHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999988776543
No 16
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.93 E-value=1.3e-24 Score=176.46 Aligned_cols=288 Identities=18% Similarity=0.245 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHh
Q 018307 59 LIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVV 138 (358)
Q Consensus 59 ~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (358)
...+.++++++.+++.||++++..+|+--+.+.+.|.+++.+-+.+..+ .|..+. +....+.+++.+++...+.+
T Consensus 9 ~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~-l~~~~f----R~t~aK~WfpiSfLLv~MIy 83 (309)
T COG5070 9 TASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKF-LRLVEF----RLTKAKKWFPISFLLVVMIY 83 (309)
T ss_pred hHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHH-HhHhhe----ehhhhhhhcCHHHHHHHHHH
Confidence 4557889999999999999999989988889999999988777665544 343332 24566888999999999999
Q ss_pred hhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccccch-------HHHHHHHHHH
Q 018307 139 CGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEPLFH-------LFGFLVCVGS 211 (358)
Q Consensus 139 ~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~-------~~G~~~~l~a 211 (358)
....+++|++++.+++++.++.+.++..+..++|.|.+..+..+.+++++.-+....+|.+.. ..|++|....
T Consensus 84 t~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~N 163 (309)
T COG5070 84 TSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTN 163 (309)
T ss_pred hcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehh
Confidence 999999999999999999999999999999999999999999999999999999988876322 2499999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 018307 212 TAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAYLVNL 291 (358)
Q Consensus 212 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (358)
.+..+.+-...|+.. +-.+......++|.++.+..+++.+...+|+++......... .-.......+++++++..+
T Consensus 164 clssaafVL~mrkri--~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~--~d~l~am~ISgl~svgiSy 239 (309)
T COG5070 164 CLSSAAFVLIMRKRI--KLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLS--VDSLMAMFISGLCSVGISY 239 (309)
T ss_pred hHhHHHHHHHHHHhh--cccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCC--hHHHHHHHHHHHHHhhhhh
Confidence 999999988888876 445566788999999999999999999988876554333222 2235567889999999999
Q ss_pred HHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhcccccc
Q 018307 292 TNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRSKV 355 (358)
Q Consensus 292 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~~~~ 355 (358)
+..|+++.++.++.++++.++.....+.|.++|||+.+...+..+.+-..+..+|.+.|+++++
T Consensus 240 ~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 240 CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred ccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999988776544
No 17
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.92 E-value=6.4e-23 Score=174.84 Aligned_cols=293 Identities=17% Similarity=0.236 Sum_probs=241.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-----CCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHH
Q 018307 53 PHIFTALIIASWYLSNIGVLLLNKYLLSF-Y-----GYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKI 126 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~-~-----~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 126 (358)
+....+..+..-+...+...++.+-+.++ | .|.+|.++.+.|-+++.++........ +++ ...++.++..
T Consensus 11 ~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~---k~~-~~~~apl~~y 86 (327)
T KOG1581|consen 11 KIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWW---KKE-LSGVAPLYKY 86 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcc---ccc-CCCCCchhHH
Confidence 44555555555556666666666555543 2 477799999999999998886655422 222 3456778888
Q ss_pred HHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccc--------
Q 018307 127 FALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEP-------- 198 (358)
Q Consensus 127 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~-------- 198 (358)
...++.+.++..|++.|++|++-++..+.|++..+.++++..++.|+|++..+++...++.+|+.+....+.
T Consensus 87 ~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g 166 (327)
T KOG1581|consen 87 SLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSG 166 (327)
T ss_pred hHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccC
Confidence 888999999999999999999999999999999999999999999999999999999999999998873321
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHH
Q 018307 199 -LFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLF 277 (358)
Q Consensus 199 -~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (358)
+++++|+.+...+.++.++.+..++++. +..+++++.++++.|+++++......+. .+ ...+........+..+.
T Consensus 167 ~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf--~~~k~s~~~mM~~vNLf~~i~~~~~li~-qg-~~~~av~F~~~hp~~~~ 242 (327)
T KOG1581|consen 167 RENSPIGILLLFGYLLFDGFTNATQDSLF--KKYKVSSLHMMFGVNLFSAILNGTYLIL-QG-HLLPAVSFIKEHPDVAF 242 (327)
T ss_pred CCCchHhHHHHHHHHHHHhhHHhHHHHHh--ccCCccHhHHHHHHHHHHHHHHHHhhhc-CC-CCchHHHHHHcChhHHH
Confidence 2458999999999999999999999999 6789999999999999999887766332 22 22233334445667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhcccc
Q 018307 278 LLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRS 353 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~~ 353 (358)
-++..++++.+.+...+..+++.|+.+...+++.|.++++.++.+.||++++..||+|..++++|+.+-...|+|+
T Consensus 243 Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~ 318 (327)
T KOG1581|consen 243 DILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKK 318 (327)
T ss_pred HHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHhc
Confidence 8888899999999999999999999999999999999999999999999999999999999999999877766653
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.92 E-value=2.5e-22 Score=180.01 Aligned_cols=268 Identities=13% Similarity=0.078 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHhhhhcccc
Q 018307 66 LSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVVCGNTSLR 145 (358)
Q Consensus 66 ~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 145 (358)
+........+|...++ -+ + ..+++.....+++.++......++..+..+++.+...+..++....++.+.+.+++
T Consensus 11 ~~~a~~~~~~k~~~~~--~~-~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 85 (281)
T TIGR03340 11 LMHAGWNLMAKSHADK--EP-D--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYH 85 (281)
T ss_pred HHHHHHHHHHhhcCCc--hh-H--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444446667866554 11 3 24666666666665555422111211223344555556666777888999999999
Q ss_pred ccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccc-cchHHHHHHHHHHHHHHHHHHHHHHH
Q 018307 146 YLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEP-LFHLFGFLVCVGSTAGRALKSVVQGI 224 (358)
Q Consensus 146 ~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~-~~~~~G~~~~l~a~~~~a~~~v~~~~ 224 (358)
+.|++..+.+.++.|+++.+++++++|||+++++|+|+.+++.|+.++..++. ..+..|+.++++++++|+.|.+..|+
T Consensus 86 ~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~ 165 (281)
T TIGR03340 86 HADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKA 165 (281)
T ss_pred cCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999998764432 34456888999999999999998887
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHH-HHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 018307 225 LLTSEAEKLHSMNLLLYMAPMSALIL-LPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAYLVNLTNFLVTKHTSAL 303 (358)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (358)
.. ++.++..........+.+.. .|............ ........+..+..+++.....+..++.++++.++.
T Consensus 166 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~ 238 (281)
T TIGR03340 166 AA----LGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS---MFPYARQILPSATLGGLMIGGAYALVLWAMTRLPVA 238 (281)
T ss_pred cc----cchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCce
Confidence 53 22222211111111222221 22222110000000 001122334445555666666667788999999999
Q ss_pred HHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHH
Q 018307 304 TLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVL 345 (358)
Q Consensus 304 ~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~ 345 (358)
..+...+++|+++.++|++++||+++..+++|.++++.|+.+
T Consensus 239 ~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 239 TVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred EEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999999875
No 19
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.91 E-value=2.3e-23 Score=170.72 Aligned_cols=261 Identities=19% Similarity=0.240 Sum_probs=215.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHH
Q 018307 84 YRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFT 163 (358)
Q Consensus 84 ~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~ 163 (358)
|.+...++++|.....+..-++..+++..+. ++..-+.....++.+.+.++..|.+++|+|.++..+-+++.|+.+
T Consensus 50 FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~----D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPV 125 (337)
T KOG1580|consen 50 FTFALALVFFQCTANTVFAKVLFLIRKKTEI----DNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPV 125 (337)
T ss_pred ehHHHHHHHHHHHHHHHHHHhheeecccccc----cCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcce
Confidence 6678889999998888777665543332222 223335567788999999999999999999999999999999999
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHhhhhhccccc-------cchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 018307 164 AIFAFLITCKKESAEVYCALMPVVFGIVLASNSEP-------LFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSM 236 (358)
Q Consensus 164 ~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~-------~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~ 236 (358)
++++.++.+++++|+++.++..++.|+++....+. +....|-++.+++....++....++|+. +.++-+..
T Consensus 126 MilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrir--a~yq~~g~ 203 (337)
T KOG1580|consen 126 MILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIR--ASYQRTGT 203 (337)
T ss_pred eeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHH--HhhccCch
Confidence 99999999999999999999999999999986532 3345799999999999999999999996 55667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHH
Q 018307 237 NLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVA 316 (358)
Q Consensus 237 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 316 (358)
.++.+.++++.+.+....++. ++.+ ++.......+..|+-+...++++.+.+.+.|..+...+|.+-|++++.+..++
T Consensus 204 ~MM~~~NlwStL~Lg~g~lfT-GElw-eF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFT 281 (337)
T KOG1580|consen 204 SMMFYTNLWSTLYLGAGLLFT-GELW-EFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFT 281 (337)
T ss_pred hhHHHHHHHHHHHhhhhheeh-hhHH-HHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHH
Confidence 899999999998887665543 3322 22223334556677777888888888999999999999999999999999999
Q ss_pred HHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccc
Q 018307 317 AVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKR 352 (358)
Q Consensus 317 ~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~ 352 (358)
++.++++|+++++.+||+|.++++.|...-....++
T Consensus 282 il~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 282 ILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK 317 (337)
T ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence 999999999999999999999999998877655443
No 20
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.89 E-value=3.3e-20 Score=164.16 Aligned_cols=248 Identities=9% Similarity=0.004 Sum_probs=169.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhccc----c-cccccHHHHHHHH
Q 018307 53 PHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVP----I-QHILSRKQFLKIF 127 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~----~-~~~~~~~~~~~~~ 127 (358)
.....++..++|... ..+.|. ..+ .+ |..++++|++++.+++.++....++++ + ++..+++.+....
T Consensus 3 g~~~~i~a~~~wg~~----~~~~k~-~~~--~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (256)
T TIGR00688 3 GIIVSLLASFLFGYM----YYYSKL-LKP--LP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLL 74 (256)
T ss_pred cHHHHHHHHHHHHHH----HHHHHH-hcc--CC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHH
Confidence 345555566666655 455687 444 66 999999999999888766554232211 0 0111222234456
Q ss_pred HHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccccchHHHHHH
Q 018307 128 ALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEPLFHLFGFLV 207 (358)
Q Consensus 128 ~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~ 207 (358)
..+++...+..+.++++++++++.++++.++.|+++++++++++|||+++++|++++++++|++++..++.+.+ .+
T Consensus 75 ~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~ 150 (256)
T TIGR00688 75 LCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WE 150 (256)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HH
Confidence 67777888999999999999999999999999999999999999999999999999999999998764332222 35
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHH
Q 018307 208 CVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAY 287 (358)
Q Consensus 208 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (358)
+++++++|+.|.+..|+.. ++ +..+.... .........+.....+.+.. ........|..++..++.+.
T Consensus 151 ~l~aa~~~a~~~i~~~~~~---~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~g~~t~ 219 (256)
T TIGR00688 151 ALVLAFSFTAYGLIRKALK---NT--DLAGFCLE-TLSLMPVAIYYLLQTDFATV-----QQTNPFPIWLLLVLAGLITG 219 (256)
T ss_pred HHHHHHHHHHHHHHHhhcC---CC--CcchHHHH-HHHHHHHHHHHHHHhccCcc-----cccCchhHHHHHHHHHHHHH
Confidence 7889999999999999873 22 22222211 11111111111111111100 00011124555556666666
Q ss_pred HHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhh
Q 018307 288 LVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLI 323 (358)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~ 323 (358)
..+..++.++++.++..++++.+++|+++.+++.+.
T Consensus 220 i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 220 TPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 777888999999999999999999999999999764
No 21
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.88 E-value=3e-21 Score=168.97 Aligned_cols=297 Identities=15% Similarity=0.176 Sum_probs=229.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHH------HHh-hcccc-----------
Q 018307 53 PHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAI------HFL-ELVPI----------- 114 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~------~~~-~~~~~----------- 114 (358)
++...+++..+.-..++..+.+++.+++++.++.|++.++.....-.+.+.++. +.. ++.++
T Consensus 11 r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~d~ 90 (416)
T KOG2765|consen 11 RWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEADA 90 (416)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhhhh
Confidence 345555555555566667788899999998888899998887654444443322 100 11000
Q ss_pred ------------------------------------------------cccccH------------HHHHHHHHHHHHHH
Q 018307 115 ------------------------------------------------QHILSR------------KQFLKIFALSAIFS 134 (358)
Q Consensus 115 ------------------------------------------------~~~~~~------------~~~~~~~~~~~~~~ 134 (358)
.+...| +..+.-+..+.+..
T Consensus 91 e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~lWF 170 (416)
T KOG2765|consen 91 EGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPLWF 170 (416)
T ss_pred hccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 001111 33444556666778
Q ss_pred HHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccc--------cchHHHHH
Q 018307 135 FSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEP--------LFHLFGFL 206 (358)
Q Consensus 135 ~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~--------~~~~~G~~ 206 (358)
+.+...|.|+.+++++..+++.+++-+||..++.++.+||+++.|.+++.+.+.|++++..++. +....|.+
T Consensus 171 ~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~l 250 (416)
T KOG2765|consen 171 LANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNL 250 (416)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999986633 23478999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHH
Q 018307 207 VCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVA 286 (358)
Q Consensus 207 ~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (358)
+++++++.||+|.++.||...++..++|......|..++..+++.|...+.+......+ ..........+++.+++..
T Consensus 251 laL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F--~lP~~~q~~~vv~~~ligt 328 (416)
T KOG2765|consen 251 LALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERF--ELPSSTQFSLVVFNNLIGT 328 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcc--cCCCCceeEeeeHhhHHHH
Confidence 99999999999999999998654468899999999999999999888776654322211 1122333444555566667
Q ss_pred HHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhcc
Q 018307 287 YLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKK 351 (358)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~ 351 (358)
++.-+.+.++.-.++|+++.+..+++.+++++.+.++-|.++++..++|.+.+++|.+..++..+
T Consensus 329 vvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 329 VVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 77788899999999999999999999999999999999999999999999999999999887644
No 22
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.87 E-value=7e-19 Score=158.48 Aligned_cols=270 Identities=20% Similarity=0.197 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHhhhh
Q 018307 62 ASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVVCGN 141 (358)
Q Consensus 62 ~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (358)
+++...+.......|...+. ...+......|...+......... .+.... ....++.++..+..++.......+.+
T Consensus 13 l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (292)
T COG0697 13 LLWGLLWGLSFIALKLAVES--LDPFLFAAALRFLIAALLLLPLLL-LEPRGL-RPALRPWLLLLLLALLGLALPFLLLF 88 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHHHHHHHH-hhcccc-cccccchHHHHHHHHHHHHHHHHHHH
Confidence 33333334434445655554 222566666699888777333333 111111 11122233445566667788899999
Q ss_pred ccccccchhHHHHHhhhHHHHHHHHHH-HHhccccchHHHHHHHHHHHhhhhhccccccch---HHHHHHHHHHHHHHHH
Q 018307 142 TSLRYLPVSFNQAIGATTPFFTAIFAF-LITCKKESAEVYCALMPVVFGIVLASNSEPLFH---LFGFLVCVGSTAGRAL 217 (358)
Q Consensus 142 ~al~~~~~~~~~~l~~~~p~~~~~~~~-~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~---~~G~~~~l~a~~~~a~ 217 (358)
.++++++++.++++.++.|+++.+++. +++|||++++++.++.++++|++++..++...+ ..|..+++++++++++
T Consensus 89 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~ 168 (292)
T COG0697 89 LALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWAL 168 (292)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 777999999999999999999999997665443 5899999999999999
Q ss_pred HHHHHHHhhcccCCCCCHHHHHH-HHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHH-HHHHHHHH
Q 018307 218 KSVVQGILLTSEAEKLHSMNLLL-YMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAY-LVNLTNFL 295 (358)
Q Consensus 218 ~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 295 (358)
+.+..|+.. +.++..... ++.. ...+........... .......+..+...++.+. ..+..++.
T Consensus 169 ~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (292)
T COG0697 169 YTALVKRLS-----RLGPVTLALLLQLL--LALLLLLLFFLSGFG-------APILSRAWLLLLYLGVFSTGLAYLLWYY 234 (292)
T ss_pred HHHHHHHhc-----CCChHHHHHHHHHH--HHHHHHHHHHhcccc-------ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999873 445555555 3333 111111111111110 1112334555555555555 45677888
Q ss_pred HHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhh
Q 018307 296 VTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEA 349 (358)
Q Consensus 296 ~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~ 349 (358)
.+++.++...++..+++|+.+.+++++++||+++..+++|.++++.|+.+....
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 235 ALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999998876
No 23
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.86 E-value=3.1e-20 Score=155.52 Aligned_cols=290 Identities=16% Similarity=0.180 Sum_probs=241.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHH
Q 018307 53 PHIFTALIIASWYLSNIGVLLLNKYLLSFYGYR-YPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSA 131 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~-~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (358)
++.+.++.+....+.-....+..+++++..+|. +-|.++..|+++-..+.++... ..+++ ++...||....++.
T Consensus 40 kw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~--~~~~k---~r~iP~rtY~~la~ 114 (367)
T KOG1582|consen 40 KWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQ--LIQTK---RRVIPWRTYVILAF 114 (367)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEE--eeccc---ceecchhHhhhhHh
Confidence 677888888888888888889999999988888 7899999999876555444332 12222 23446677778888
Q ss_pred HHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccc----cchHHHHHH
Q 018307 132 IFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEP----LFHLFGFLV 207 (358)
Q Consensus 132 ~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~----~~~~~G~~~ 207 (358)
+....+.+++-++.|++.++-.++++|..+.+++.+.++-++|+.+.++.+..++.+|.+.....|. .++..|+.+
T Consensus 115 ~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~m 194 (367)
T KOG1582|consen 115 LTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMM 194 (367)
T ss_pred hhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHH
Confidence 8888999999999999999999999999999999999999999999999999999999999986654 567899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHH
Q 018307 208 CVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAY 287 (358)
Q Consensus 208 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (358)
.-++.++.|+-...+++.+ +..+-+..++++|...++.++++...... ++....+..-.+++.....+.++-+..++
T Consensus 195 IsgALl~DA~iGNvQEk~m--~~~~~ss~EmvfySy~iG~vflf~~mvlT-ge~f~a~~fcaehp~~tyGy~~~~s~~gy 271 (367)
T KOG1582|consen 195 ISGALLADAVIGNVQEKAM--KMNPASSSEMVFYSYGIGFVFLFAPMVLT-GELFSAWTFCAEHPVRTYGYAFLFSLAGY 271 (367)
T ss_pred HHHHHHHHHHhhHHHHHHH--hhCCCCcceEEEeeecccHHHHHHHHHhc-ccchhhhHHHHhCcHhHHHHHHHHHHHhH
Confidence 9999999999888888888 55666788999999999999887776654 33444444334445556666666777777
Q ss_pred HHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhc
Q 018307 288 LVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAK 350 (358)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~ 350 (358)
+........++..++.++..+++.+..+++++|.++|..++|....-|..+++.|+++-.+.|
T Consensus 272 lG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 272 LGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 777777788999999999999999999999999999999999999999999999999887776
No 24
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.86 E-value=6.2e-19 Score=146.59 Aligned_cols=256 Identities=19% Similarity=0.155 Sum_probs=204.3
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHhhhhccccccchhHH
Q 018307 73 LLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVVCGNTSLRYLPVSFN 152 (358)
Q Consensus 73 ~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 152 (358)
-+.|.++-. ++ |.-.+++|...+.+++..+.+ .++ +...+++++..+..++....++.++|.+++.+|.+++
T Consensus 29 s~Ak~LFP~--vG-~~g~t~lRl~~aaLIll~l~R-Pwr----~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiA 100 (292)
T COG5006 29 SFAKSLFPL--VG-AAGVTALRLAIAALILLALFR-PWR----RRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIA 100 (292)
T ss_pred HHHHHHccc--cC-hhhHHHHHHHHHHHHHHHHhh-HHH----hccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 356888876 44 999999999999999888765 322 2256778899999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcccc---ccchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 018307 153 QAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSE---PLFHLFGFLVCVGSTAGRALKSVVQGILLTSE 229 (358)
Q Consensus 153 ~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~---~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~ 229 (358)
..+..+-|+.+.+++. -+.+..+.+.+.+.|..+..... .+.|+.|..++++++.||+.|.+..||.-
T Consensus 101 VAiEF~GPL~vA~~~s------Rr~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g--- 171 (292)
T COG5006 101 VAIEFTGPLAVALLSS------RRLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAG--- 171 (292)
T ss_pred hhhhhccHHHHHHHhc------cchhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhc---
Confidence 9999999998887662 24456666777788888776332 46688999999999999999999999974
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH-HHHHHhccchhHHHHh
Q 018307 230 AEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAYLVNLT-NFLVTKHTSALTLQVL 308 (358)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~ 308 (358)
+..+....+...+.++.++.+|+.....++.. .++.....-+..++++...-++ -...+++.++.++++.
T Consensus 172 -~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l--------~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~L 242 (292)
T COG5006 172 -RAEHGTAGVAVGMLVAALIVLPIGAAQAGPAL--------FSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTL 242 (292)
T ss_pred -ccCCCchHHHHHHHHHHHHHhhhhhhhcchhh--------cChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHH
Confidence 35566777888889999999998776544432 2344455555555655544444 5567999999999999
Q ss_pred hhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccccc
Q 018307 309 GNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRSK 354 (358)
Q Consensus 309 ~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~~~ 354 (358)
..++|.++.+.|++++||++|..||+|++.++.+..-.+...+|+.
T Consensus 243 lSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 243 LSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred HHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence 9999999999999999999999999999999999886666554443
No 25
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.83 E-value=2.1e-22 Score=168.11 Aligned_cols=276 Identities=15% Similarity=0.152 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHH
Q 018307 55 IFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFS 134 (358)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (358)
...++..+. ++.+.++.+..|...++ |..+.-.|+++-.++.++.....+ .+. ...+...+..++.++...
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e~~-----p~e~a~~r~l~~mlit~pcliy~~-~~v--~gp~g~R~~LiLRg~mG~ 108 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLEND-----PMELASFRLLVRMLITYPCLIYYM-QPV--IGPEGKRKWLILRGFMGF 108 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhccC-----hhHhhhhhhhhehhhhheEEEEEe-eee--ecCCCcEEEEEeehhhhh
Confidence 333444444 66777777777776655 899999997776666665543221 111 011122244567788888
Q ss_pred HHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccc-----cc---------cc
Q 018307 135 FSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNS-----EP---------LF 200 (358)
Q Consensus 135 ~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~-----~~---------~~ 200 (358)
.+..+.+|+++|++.+.+.++..++|+|+.++++.++||+++..+.++..+.+.||++++.+ +. +.
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~ 188 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEY 188 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999732 11 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHH
Q 018307 201 HLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLL 280 (358)
Q Consensus 201 ~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (358)
+..|...++.++++-|--.++.|++- ++.|....+.|..+++.+..++.....+.. ...+....|++++
T Consensus 189 ~~~gt~aai~s~lf~asvyIilR~iG----k~~h~~msvsyf~~i~lV~s~I~~~~ig~~-------~lP~cgkdr~l~~ 257 (346)
T KOG4510|consen 189 DIPGTVAAISSVLFGASVYIILRYIG----KNAHAIMSVSYFSLITLVVSLIGCASIGAV-------QLPHCGKDRWLFV 257 (346)
T ss_pred cCCchHHHHHhHhhhhhHHHHHHHhh----ccccEEEEehHHHHHHHHHHHHHHhhccce-------ecCccccceEEEE
Confidence 35688888999988888888888874 566777777788888877766655444322 1223455677888
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhc
Q 018307 281 GNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAK 350 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~ 350 (358)
..|+.++..+....+.+++-.+...++..+...+++.++.+++|||.++++.|.|+++++.+.......|
T Consensus 258 ~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 258 NLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred EehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999988877665443
No 26
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.83 E-value=4.9e-19 Score=153.66 Aligned_cols=215 Identities=22% Similarity=0.233 Sum_probs=176.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccc
Q 018307 119 SRKQFLKIFALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEP 198 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~ 198 (358)
.+++..+..++++++.+.+.+.+.++++++++++++++++..+++++++++++|+|++++||.++.+.++|+.+...++.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 34455667788999999999999999999999999999999999999999999999999999999999999998863221
Q ss_pred -----------------cchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 018307 199 -----------------LFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNV 261 (358)
Q Consensus 199 -----------------~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (358)
.....|+++.++++++.++..++.||.+ |+++.+.+......+.++.++.++.....++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~l--K~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~ 170 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLL--KRSNVSLWIQNMQLYLFGILFNLLALLLSDGSA 170 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 1135899999999999999999999999 455567777777778888877776655544432
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHH
Q 018307 262 AATTIEKASEDRFVLFLLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVT 339 (358)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~li 339 (358)
..+......++...|..+...++.|.... ..+|+.+...-+....+..+++.++++++||.+++....+|..++
T Consensus 171 ~~~~g~f~G~~~~~~~~i~~~a~gGllva----~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 171 ISESGFFHGYSWWVWIVIFLQAIGGLLVA----FVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cccCCchhhcchHHHHHHHHHHHhhHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 22222233456667777777777776543 457999999999999999999999999999999999999998753
No 27
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.83 E-value=5.8e-17 Score=138.63 Aligned_cols=280 Identities=14% Similarity=0.087 Sum_probs=211.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc--cccHHHHHHHHHHH
Q 018307 53 PHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQH--ILSRKQFLKIFALS 130 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 130 (358)
+.+..+..-++|+. ..++.|.+-. .| +..+...|.+-+...+.......|+.+.-+ ..+.+.+..+...+
T Consensus 8 Gil~~l~Ay~lwG~----lp~y~kll~~---~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a 79 (293)
T COG2962 8 GILLALLAYLLWGL----LPLYFKLLEP---LP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTA 79 (293)
T ss_pred hhHHHHHHHHHHHH----HHHHHHHHcc---CC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHH
Confidence 44555555555544 4666777764 45 889999999888877776665443332211 12233444556666
Q ss_pred HHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccccchHHHHHHHHH
Q 018307 131 AIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEPLFHLFGFLVCVG 210 (358)
Q Consensus 131 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~ 210 (358)
++...+.....+|.+.-.+-.+++-...+|++..+++.+++|||+++.||+++++..+||..-.....+.++....++
T Consensus 80 ~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la-- 157 (293)
T COG2962 80 LLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALA-- 157 (293)
T ss_pred HHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH--
Confidence 777888889999999988888889999999999999999999999999999999999999999988888888776665
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 018307 211 STAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAYLVN 290 (358)
Q Consensus 211 a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (358)
++|++|...-|+ -++|+.+-.+...+.-.+..+......+.... .....+...+.+++..|.....--
T Consensus 158 --~sf~~Ygl~RK~------~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~----~~~~~~~~~~~LLv~aG~vTavpL 225 (293)
T COG2962 158 --LSFGLYGLLRKK------LKVDALTGLTLETLLLLPVALIYLLFLADSGQ----FLQQNANSLWLLLVLAGLVTAVPL 225 (293)
T ss_pred --HHHHHHHHHHHh------cCCchHHhHHHHHHHHhHHHHHHHHHHhcCch----hhhcCCchHHHHHHHhhHHHHHHH
Confidence 788889886554 36677777777666665555555444443221 111234556777777777766554
Q ss_pred HHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccccc
Q 018307 291 LTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRSK 354 (358)
Q Consensus 291 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~~~ 354 (358)
.....+-++.+-.+.++..+++|....+++++++||+++..+++..+++-.|..+|....-+++
T Consensus 226 ~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~ 289 (293)
T COG2962 226 LLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTA 289 (293)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556678999999999999999999999999999999999999999999999999997755443
No 28
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1e-16 Score=141.01 Aligned_cols=283 Identities=19% Similarity=0.174 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHhh----cccccc-----cccHHHHHHHHHHHHHH
Q 018307 64 WYLSNIGVLLLNKYLLSFYGYRY-PIFLTMLHMISCAVYSYVAIHFLE----LVPIQH-----ILSRKQFLKIFALSAIF 133 (358)
Q Consensus 64 ~~~~~~~~~~~~K~~~~~~~~~~-p~~l~~~r~~~~~~~l~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~ 133 (358)
-.+-..+.....|+.-++.+.++ |....++--.+-.+++........ .+..+. ...+....++.+.++.|
T Consensus 23 ~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iY 102 (345)
T KOG2234|consen 23 LTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIY 102 (345)
T ss_pred HHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHH
Confidence 33555566677777776643332 667777766666666655554321 111111 11232445567778999
Q ss_pred HHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcccc-----------ccchH
Q 018307 134 SFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSE-----------PLFHL 202 (358)
Q Consensus 134 ~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~-----------~~~~~ 202 (358)
++.+.+.+.++.+.+++++++..++..+.|+++..++++||.+++||.++++.+.|+.+...+. .+...
T Consensus 103 alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~ 182 (345)
T KOG2234|consen 103 ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPF 182 (345)
T ss_pred HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchh
Confidence 9999999999999999999999999999999999999999999999999999999999987211 12347
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHH
Q 018307 203 FGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGN 282 (358)
Q Consensus 203 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (358)
.|....+.+....++..++.++++ |+.+.+.+....-...+|.++.+......|+...........++...|..++..
T Consensus 183 ~G~~avl~~c~~SgfAgvYfEkiL--K~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~ 260 (345)
T KOG2234|consen 183 LGLVAVLVACFLSGFAGVYFEKIL--KGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLN 260 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH--hcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHH
Confidence 899999999999999999999999 566777887777777888877776666655544431122455677889999998
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccc
Q 018307 283 ATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKR 352 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~ 352 (358)
++-|....+ ..|+.+...-+....+..+++.+.++.++|.++|....+|..+++.++.+|...+.+
T Consensus 261 a~gGLlvs~----v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 261 AVGGLLVSL----VMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred hccchhHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 888865544 469999999999999999999999999999999999999999999999999966554
No 29
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.81 E-value=1e-17 Score=141.09 Aligned_cols=285 Identities=17% Similarity=0.172 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh-----cCCCchHHHHHHHHHHHHHHHHHHHHHhhccccc-------ccccHH----HHHH
Q 018307 62 ASWYLSNIGVLLLNKYLLSF-----YGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQ-------HILSRK----QFLK 125 (358)
Q Consensus 62 ~~~~~~~~~~~~~~K~~~~~-----~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~-------~~~~~~----~~~~ 125 (358)
++...++..+++..||.=+. .+|..|+..+..-|+.-+.++.++...+.+...+ ...+.+ .-+.
T Consensus 9 ~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~l 88 (372)
T KOG3912|consen 9 LIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVL 88 (372)
T ss_pred hhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcce
Confidence 44456677778888987653 3577788888877776666666655433221110 001111 1234
Q ss_pred HHHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccc-------
Q 018307 126 IFALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEP------- 198 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~------- 198 (358)
+++.+++...+..+.|.++.+++++.+|+++....+|+.+++.-+++++++.++|+|+....+|++++...|.
T Consensus 89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~ 168 (372)
T KOG3912|consen 89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPY 168 (372)
T ss_pred ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCc
Confidence 5778999999999999999999999999999999999999999999999999999999999999998874431
Q ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhc----chh--------HH
Q 018307 199 ---LFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIE----GNV--------AA 263 (358)
Q Consensus 199 ---~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~--------~~ 263 (358)
+....|+++.+.+-+.-|.+.++.+|.+ ++.+.+|.+...|..++|.+++........ +.. +.
T Consensus 169 ~d~s~iitGdllIiiaqiivaiQ~v~Eek~l--~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~e 246 (372)
T KOG3912|consen 169 TDYSSIITGDLLIIIAQIIVAIQMVCEEKQL--KKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLE 246 (372)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHhhh--hhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchh
Confidence 2336799999999999999999999998 678999999999999999766544433211 100 11
Q ss_pred HHH---hhhccchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHH
Q 018307 264 TTI---EKASEDRFVLFLLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTI 340 (358)
Q Consensus 264 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii 340 (358)
.+. ......+.....+....+...++|+.-....+..|+++..+...++.....+++.....|.+...|+.|.++.+
T Consensus 247 D~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi 326 (372)
T KOG3912|consen 247 DWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILI 326 (372)
T ss_pred hHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11112223333333333334456777777889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 018307 341 MGVVLYSE 348 (358)
Q Consensus 341 ~g~~~~~~ 348 (358)
.|+++|+.
T Consensus 327 ~Gi~lY~~ 334 (372)
T KOG3912|consen 327 MGIILYNQ 334 (372)
T ss_pred HHHHHHHH
Confidence 99999984
No 30
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.80 E-value=7e-17 Score=144.84 Aligned_cols=265 Identities=17% Similarity=0.159 Sum_probs=191.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHH
Q 018307 54 HIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIF 133 (358)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (358)
.+..++.+++|+...+. .|.+. +++ +.+.. |...+.+++..+....+. ++ ...+..+..-+..++..
T Consensus 3 ~l~~lia~~~wGs~g~~----~k~~~---g~~-~~~~~--~~~~g~l~~~~~~~~~~~-~~--~~~~~~~~~g~l~G~~w 69 (290)
T TIGR00776 3 ILIALIPALFWGSFVLI----NVKIG---GGP-YSQTL--GTTFGALILSIAIAIFVL-PE--FWALSIFLVGLLSGAFW 69 (290)
T ss_pred hHHHHHHHHHHhhhHHH----HhccC---CCH-HHHHH--HHHHHHHHHHHHHHHHhC-Cc--ccccHHHHHHHHHHHHH
Confidence 44556666677666444 46654 355 33333 676676666655543332 21 12244455556667778
Q ss_pred HHHHhhhhccccccchhHHHHHhh-hHHHHHHHHHHHHhccccchHH----HHHHHHHHHhhhhhcccccc-------ch
Q 018307 134 SFSVVCGNTSLRYLPVSFNQAIGA-TTPFFTAIFAFLITCKKESAEV----YCALMPVVFGIVLASNSEPL-------FH 201 (358)
Q Consensus 134 ~~~~~~~~~al~~~~~~~~~~l~~-~~p~~~~~~~~~~~~e~~~~~~----~~~~~~~~~Gv~l~~~~~~~-------~~ 201 (358)
..++.+.+.+.++++++.+..+.+ +.++++.+.+.+++|||.++++ ++|+++.++|+++....+.+ .+
T Consensus 70 ~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~ 149 (290)
T TIGR00776 70 ALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFN 149 (290)
T ss_pred HhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccc
Confidence 889999999999999999999998 8888999999999999999999 99999999999988643211 23
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHH---HHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHH
Q 018307 202 -LFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNL---LLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLF 277 (358)
Q Consensus 202 -~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (358)
..|++++++++++|+.|.+..|+. +.||... .++..+.+.++..+... ...+ + .....+.
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~----~-----~~~~~~~ 213 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAF------GVDGLSVLLPQAIGMVIGGIIFNLGHI-LAKP----L-----KKYAILL 213 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc------CCCcceehhHHHHHHHHHHHHHHHHHh-cccc----h-----HHHHHHH
Confidence 689999999999999999999975 2567766 34433444433332221 0011 0 1223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-ccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhh----hhHHHHHHHHHHhhh
Q 018307 278 LLLGNATVAYLVNLTNFLVTK-HTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGM----TGFAVTIMGVVLYSE 348 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~----~G~~lii~g~~~~~~ 348 (358)
.++ .|++....+..++...+ +.++.+.++..+++|+.+.+++++++||+.+..++ +|.++++.|+.+...
T Consensus 214 ~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 214 NIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 344 66665555666777788 99999999999999999999999999999999999 999999999887654
No 31
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.80 E-value=4.6e-19 Score=149.02 Aligned_cols=264 Identities=17% Similarity=0.236 Sum_probs=206.2
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHhhhhccccc-cchhHH
Q 018307 74 LNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVVCGNTSLRY-LPVSFN 152 (358)
Q Consensus 74 ~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~ 152 (358)
+-+.+.++ +-..-..+|+.|+++-+.--++..- +....+++-..+.++.....+...+++.|+++++ +|.+..
T Consensus 21 ~lE~L~~~-~pgsgNLITFaqFlFia~eGlif~s-----kf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlH 94 (330)
T KOG1583|consen 21 FLELLVRN-EPGSGNLITFAQFLFIATEGLIFTS-----KFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLH 94 (330)
T ss_pred HHHHHHHh-CCCCeeehHHHHHHHHHHhceeeec-----cccccCCCCchhhhheehheeeeeeeeccceeeecccceEE
Confidence 34555544 2233568899999877766555432 1111123334455556666777889999999998 999999
Q ss_pred HHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccc---cccc--------------h--HHHHHHHHHHHH
Q 018307 153 QAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNS---EPLF--------------H--LFGFLVCVGSTA 213 (358)
Q Consensus 153 ~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~---~~~~--------------~--~~G~~~~l~a~~ 213 (358)
.++++.+++-++.+++++.|+|++.+|+.++....+|+++.... |... . ..|+.+..++.+
T Consensus 95 iIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~ 174 (330)
T KOG1583|consen 95 IIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALL 174 (330)
T ss_pred EEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988632 1100 0 469999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhh-----------hccchHHHHHHHHH
Q 018307 214 GRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEK-----------ASEDRFVLFLLLGN 282 (358)
Q Consensus 214 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 282 (358)
..|...++++... ++++-++-+.++|.-..+. |+.++..++-...+... ....+..|.+++++
T Consensus 175 ~sa~mgiyqE~~Y--~kyGKh~~EalFytH~LsL----P~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n 248 (330)
T KOG1583|consen 175 LSAYMGIYQETTY--QKYGKHWKEALFYTHFLSL----PLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFN 248 (330)
T ss_pred HHHHHHHHHHHHH--HHhcCChHHHHHHHHHhcc----chHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHH
Confidence 9999999999998 5577789999999998884 44444333322222211 11245778999999
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhh
Q 018307 283 ATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEA 349 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~ 349 (358)
++.-+++.-..+.+..++++.+++++-++|..++.++|.++|.++++++.|+|.++++.|.++|...
T Consensus 249 ~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 249 VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9998888777888899999999999999999999999999999999999999999999999999754
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.76 E-value=2.5e-17 Score=134.03 Aligned_cols=145 Identities=37% Similarity=0.623 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc---CCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhc-----cchHH
Q 018307 204 GFLVCVGSTAGRALKSVVQGILLTSE---AEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKAS-----EDRFV 275 (358)
Q Consensus 204 G~~~~l~a~~~~a~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~ 275 (358)
|.+++++|.++.++++++.|+.++++ +++.++.++++|+++.+.+.++|.+...|++.......... .....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 78899999999999999999998542 36889999999999999999999999988876443322211 14577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhh
Q 018307 276 LFLLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSE 348 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~ 348 (358)
+..++.+|++++++|++.+.+++++||++.++.+.+|.+..+++|+++|||+++..+++|+++.+.|.++|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999975
No 33
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.66 E-value=4.4e-17 Score=135.59 Aligned_cols=265 Identities=13% Similarity=0.122 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHhhhhccccc
Q 018307 67 SNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVVCGNTSLRY 146 (358)
Q Consensus 67 ~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 146 (358)
+..+..+.+.++-++ +.+.|...+++.+..-+++.-++..+++ + .-+..|+..+.+++...-++.+...|.+|
T Consensus 29 ~~t~~a~tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~--~----~~~~~~~hYilla~~DVEaNy~vV~AyQy 101 (336)
T KOG2766|consen 29 LITSTAFTSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRR--K----YIKAKWRHYILLAFVDVEANYFVVKAYQY 101 (336)
T ss_pred HHHcchhhhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhh--H----HHHHHHHHhhheeEEeecccEEEeeehhh
Confidence 334445556666655 4677999999999888777776665332 1 34566777888888888889899999999
Q ss_pred cchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcccc--------ccchHHHHHHHHHHHHHHHHH
Q 018307 147 LPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSE--------PLFHLFGFLVCVGSTAGRALK 218 (358)
Q Consensus 147 ~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~--------~~~~~~G~~~~l~a~~~~a~~ 218 (358)
++....+++.+-..+-+++++|+++|.|+.+.++.|+++++.|+++++.+| ++....|+.+.++++-+||..
T Consensus 102 TsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVS 181 (336)
T KOG2766|consen 102 TSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVS 181 (336)
T ss_pred cchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeec
Confidence 999999999999999999999999999999999999999999999988654 234568999999999999999
Q ss_pred HHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018307 219 SVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAYLVNLTNFLVTK 298 (358)
Q Consensus 219 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (358)
++..+.+. ++.|..+++....++|+++..+- ++.|..+.. ...|+......+. .+++-|+.+-..-.+++
T Consensus 182 Nv~EEflv----kn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~----tl~w~~~i~~yl~-f~L~MFllYsl~pil~k 251 (336)
T KOG2766|consen 182 NVSEEFLV----KNADRVELMGFLGLFGAIISAIQ-FIFERHHVS----TLHWDSAIFLYLR-FALTMFLLYSLAPILIK 251 (336)
T ss_pred cccHHHHH----hcCcHHHHHHHHHHHHHHHHHHH-Hhhhcccee----eEeehHHHHHHHH-HHHHHHHHHHhhHHhee
Confidence 99999987 67789999999999999887766 444433221 1122233333333 44444444444556789
Q ss_pred ccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhc
Q 018307 299 HTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAK 350 (358)
Q Consensus 299 ~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~ 350 (358)
..|++.+++--.....+++++ ..||-+.+|...+..+.+..|.++|..++
T Consensus 252 ~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re 301 (336)
T KOG2766|consen 252 TNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE 301 (336)
T ss_pred cCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence 999999888888889999888 77899999999999999999999996543
No 34
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.43 E-value=1.7e-12 Score=112.18 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=133.9
Q ss_pred cchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccc--------------------cc-------c
Q 018307 147 LPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNS--------------------EP-------L 199 (358)
Q Consensus 147 ~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~--------------------~~-------~ 199 (358)
++++.....++..++++++..+.+.+||++..++++.++...|++....+ +. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 56778889999999999999999999999999999999999998753211 11 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHH
Q 018307 200 FHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLL 279 (358)
Q Consensus 200 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (358)
....|....+.+..+.++..+++++..+ .++.+.+.......+++.+.........+............++...|..+
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILK--DGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVG 159 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHccc--CCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHH
Confidence 3467888888888999999999999863 23322233233223333222111111111111111110122334445444
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHh
Q 018307 280 LGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLY 346 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~ 346 (358)
+.+++.+ .+..+.+++.++.+.++...++++.+.++++++|||+++..+++|..+++.|+++|
T Consensus 160 ~~~a~~~----~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 160 LLNVGGG----LCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHhcC----ceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 4443333 44567899999999999999999999999999999999999999999999998765
No 35
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.42 E-value=2.9e-13 Score=108.75 Aligned_cols=226 Identities=15% Similarity=0.132 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcccc--
Q 018307 120 RKQFLKIFALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSE-- 197 (358)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~-- 197 (358)
|..+++..|.+++....++.+..+++.++++.++.+.++.-.|+.+++++.+|+|+...+++++++.+.|++++...|
T Consensus 50 k~~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~ 129 (290)
T KOG4314|consen 50 KLFFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE 129 (290)
T ss_pred eeeeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch
Confidence 444556677888888999999999999999999999999999999999999999999999999999999999988544
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH----HHH-HHHhcchhHHHHHhhhccc
Q 018307 198 PLFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALIL----LPF-TLYIEGNVAATTIEKASED 272 (358)
Q Consensus 198 ~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~-~~~~~~~~~~~~~~~~~~~ 272 (358)
...++.|+.++++++...|+|.|..|+..+.. +--....+++-.+..-+ .|. .+.+.+ .+. .....
T Consensus 130 ~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA----n~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~--VE~---~qsFA 200 (290)
T KOG4314|consen 130 HADEIIGIACAVGSAFMAALYKVLFKMFIGNA----NFGDAAHFMSCLGFFNLCFISFPALILAFTG--VEH---LQSFA 200 (290)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC----cchhHHHHHHHHHHHHHHHHhhhHHHHHHhc--hHH---HHHHh
Confidence 45678999999999999999999999998322 22222223333332221 111 111211 111 11112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccc
Q 018307 273 RFVLFLLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKR 352 (358)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~ 352 (358)
...|..+...+.+....|+.....+..+.|...|+-.....+....++.++-+-.++.....|.+++..|.++......|
T Consensus 201 ~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 201 AAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred hCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 23356666667777777887777889999999999999999999999998877789999999999999999988877665
Q ss_pred cc
Q 018307 353 SK 354 (358)
Q Consensus 353 ~~ 354 (358)
.+
T Consensus 281 ~e 282 (290)
T KOG4314|consen 281 DE 282 (290)
T ss_pred hh
Confidence 54
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.34 E-value=8.9e-12 Score=93.22 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHhhhhcccc
Q 018307 66 LSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVVCGNTSLR 145 (358)
Q Consensus 66 ~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 145 (358)
++.....++.|..+++ .+ |.+.+.+|..+..+.+..+....++.+.....+++.|......++....+..+++.+++
T Consensus 13 ~fa~L~~iF~KIGl~~--vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk 89 (140)
T COG2510 13 LFAGLTPIFAKIGLEG--VD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALK 89 (140)
T ss_pred HHHHHHHHHHHHhccc--cC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHh
Confidence 3344447889999987 55 99999999999988888887766655443234566777778888888999999999999
Q ss_pred ccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhc
Q 018307 146 YLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLAS 194 (358)
Q Consensus 146 ~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~ 194 (358)
.-++|...-+..++|+++.+++++++|||++..+|+|+.++++|++++.
T Consensus 90 ~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 90 KGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred cCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999999999999998764
No 37
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.29 E-value=2e-11 Score=95.37 Aligned_cols=120 Identities=21% Similarity=0.333 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHH-HHHHHhhhhccccccc
Q 018307 70 GVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAI-FSFSVVCGNTSLRYLP 148 (358)
Q Consensus 70 ~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~ 148 (358)
...+++|...++ ++ |...+++|+..+.+ +.+.....+..+ ....+.+.+...+..+++ ...+..+.++++++++
T Consensus 5 ~~~~~~k~~~~~--~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 5 IYSVFSKKLLKK--IS-PLSITFWRFLIAGI-LLILLLILGRKP-FKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred eHHHHHHHHhcc--CC-HHHHHHHHHHHHHH-HHHHHHhhcccc-ccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 346677998887 66 99999999999987 544444333332 122344455566666666 5889999999999999
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhc
Q 018307 149 VSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLAS 194 (358)
Q Consensus 149 ~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~ 194 (358)
++..+.+..+.|+++.+++++++||++++++++|++++++|++++.
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998764
No 38
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.22 E-value=8.3e-11 Score=88.08 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHH
Q 018307 204 GFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNA 283 (358)
Q Consensus 204 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (358)
..++++++++++++..++.|.-. ++.||..-+..-++....++..........+ .....+...|..++.+|
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl----~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~-----~~~~~~~k~~lflilSG 74 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGL----EGVDPDFATTIRTIVILIFLLIVLLVTGNWQ-----AGGEIGPKSWLFLILSG 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----cccCccHHHHHHHHHHHHHHHHHHHhcCcee-----cccccCcceehhhhHHH
Confidence 46789999999999999999876 6778888888777777777666655543221 12223566788899999
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhh
Q 018307 284 TVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYS 347 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~ 347 (358)
+.+....+++|++++.-.+..+....-..++++++++++++||++|..+++|.+++..|..+..
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9998888999999999999999999999999999999999999999999999999999987654
No 39
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.16 E-value=2.1e-10 Score=87.95 Aligned_cols=107 Identities=18% Similarity=0.265 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-cccccHHHHHHHHHHHHHHH-HHHhhhhccccccchhHHHHHhhhHHHHHHHHHHH
Q 018307 92 MLHMISCAVYSYVAIHFLELVPI-QHILSRKQFLKIFALSAIFS-FSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFL 169 (358)
Q Consensus 92 ~~r~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~ 169 (358)
.+|+..+.+++..+....++.+. .+..+++.+..++..+++.. .++.+.++|+++.| +....+.+++|+++.+++.+
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 47888888887777664333221 11122334455556566654 88999999999999 58889999999999999999
Q ss_pred HhccccchHHHHHHHHHHHhhhhhcccccc
Q 018307 170 ITCKKESAEVYCALMPVVFGIVLASNSEPL 199 (358)
Q Consensus 170 ~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~ 199 (358)
++|||+++++|.++.++++|++++..++.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999877654
No 40
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.13 E-value=4.7e-10 Score=87.56 Aligned_cols=124 Identities=23% Similarity=0.242 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHH-HHHHHH
Q 018307 213 AGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATV-AYLVNL 291 (358)
Q Consensus 213 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 291 (358)
++||.+.++.|+.. ++.|+.....+....+.+ +++.....+... ....+...+......+++ ....+.
T Consensus 1 ~~~a~~~~~~k~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (126)
T PF00892_consen 1 FSWAIYSVFSKKLL----KKISPLSITFWRFLIAGI-LLILLLILGRKP------FKNLSPRQWLWLLFLGLLGTALAYL 69 (126)
T ss_pred ceeeeHHHHHHHHh----ccCCHHHHHHHHHHHHHH-HHHHHHhhcccc------ccCCChhhhhhhhHhhccceehHHH
Confidence 36788999999987 458999999999999987 666666544332 111223333334444444 466677
Q ss_pred HHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhh
Q 018307 292 TNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYS 347 (358)
Q Consensus 292 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~ 347 (358)
..+.++++.++...++...++|+++.++++++++|+++..+++|.++++.|+++.+
T Consensus 70 ~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 70 LYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999998764
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.07 E-value=7.1e-08 Score=83.80 Aligned_cols=210 Identities=16% Similarity=0.194 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHh-hhHHHHHHHHHHHHhccccchHHHH----HHHHHHHhhhhhc
Q 018307 120 RKQFLKIFALSAIFSFSVVCGNTSLRYLPVSFNQAIG-ATTPFFTAIFAFLITCKKESAEVYC----ALMPVVFGIVLAS 194 (358)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~p~~~~~~~~~~~~e~~~~~~~~----~~~~~~~Gv~l~~ 194 (358)
...+...+..+++...++..++.+++++.+|...-+. ....+.+.+.++++++|-.+..+++ ++++.++|+.+..
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 3566777888999999999999999999988877665 6777889999999999977665544 7888889999887
Q ss_pred ccccc--------chHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 018307 195 NSEPL--------FHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTI 266 (358)
Q Consensus 195 ~~~~~--------~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 266 (358)
..|.+ ....|+...+++.+.|..|.+..|.. +.|++....-+++--.+..+.+....+.+..
T Consensus 122 ~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~------~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~---- 191 (269)
T PF06800_consen 122 YQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF------HVSGWSAFLPQAIGMLIGAFIFNLFSKKPFF---- 191 (269)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc------CCChhHhHHHHHHHHHHHHHHHhhccccccc----
Confidence 54421 22569999999999999999997763 4677777776655333333333332211100
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccch----hhhhHHHHHHH
Q 018307 267 EKASEDRFVLFLLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVM----GMTGFAVTIMG 342 (358)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~----~~~G~~lii~g 342 (358)
... -+.-+.+|++.-..|+.++...++.+..+.=.++.+..+++.+.|.+++||+-+.. .++|.++++.|
T Consensus 192 -----~k~-~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G 265 (269)
T PF06800_consen 192 -----EKK-SWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIG 265 (269)
T ss_pred -----ccc-hHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHh
Confidence 111 22234556666677788888889999999999999999999999999999997765 55688888877
Q ss_pred HHH
Q 018307 343 VVL 345 (358)
Q Consensus 343 ~~~ 345 (358)
..+
T Consensus 266 ~il 268 (269)
T PF06800_consen 266 AIL 268 (269)
T ss_pred hhc
Confidence 653
No 42
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.93 E-value=1e-07 Score=86.11 Aligned_cols=141 Identities=11% Similarity=0.010 Sum_probs=108.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHH
Q 018307 199 LFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFL 278 (358)
Q Consensus 199 ~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (358)
+....|.++.++++++|+...++.|.. .+.+|.++..+...++.+++++......+.. ...... .+...+..
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-----~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~--~~~~~~-~~~~~~~~ 75 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-----YYVPADEILTHRVIWSFFFMVVLMSICRQWS--YLKTLI-QTPQKIFM 75 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHccHH--HHHHHH-cCHHHHHH
Confidence 345679999999999999999999764 4589999999999999887776654432211 100000 12222333
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhh
Q 018307 279 LLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYS 347 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~ 347 (358)
...+++.....+.+.++++++.++...++..+..|++..++++++++|+++..+++|.++.+.|+.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 334555555667778899999999999999999999999999999999999999999999999988764
No 43
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.93 E-value=8.1e-08 Score=84.94 Aligned_cols=139 Identities=12% Similarity=0.036 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhcc-chHHHHHHHH
Q 018307 203 FGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASE-DRFVLFLLLG 281 (358)
Q Consensus 203 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 281 (358)
.|..+.++++++|+...+..|.. .+.+|.++.++-.+++.+.+.+........... ....... ....+..+..
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-----~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 75 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-----KPLPATDILGHRMIWSFPFMLLSVTLFRQWAAL-IERLKRIQKRPLILSLLL 75 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHH-HHHHhCcccchHHHHHHH
Confidence 37899999999999999999974 358999999999999988876665443221110 0001101 1122444555
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhh
Q 018307 282 NATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYS 347 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~ 347 (358)
.++.....+.+.+.++++.++.+.++..+..|+++.++++++++|+++..+++|.++.+.|+.+..
T Consensus 76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 566666677788889999999999999999999999999999999999999999999999988654
No 44
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.84 E-value=1.7e-07 Score=83.05 Aligned_cols=128 Identities=16% Similarity=0.088 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHH-HHHHH
Q 018307 59 LIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAI-FSFSV 137 (358)
Q Consensus 59 ~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 137 (358)
.+.++-.++.....+..|...++++.+ +.....+++..+.+++.+.....+..+ . .+...+...+..+++ ...+.
T Consensus 131 ~~~l~a~~~~a~~~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~ 206 (260)
T TIGR00950 131 LLGLGSGISFALGTVLYKRLVKKEGPE-LLQFTGWVLLLGALLLLPFAWFLGPNP--Q-ALSLQWGALLYLGLIGTALAY 206 (260)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHhcCCCC--C-cchHHHHHHHHHHHHHHHHHH
Confidence 333333344444466678887664422 445565788888888777665322111 1 234455555556655 46789
Q ss_pred hhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Q 018307 138 VCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGI 190 (358)
Q Consensus 138 ~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv 190 (358)
.+.++++++.+++.++++.++.|++++++++++++|+++..++.|..+++.|+
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999986
No 45
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.80 E-value=1.7e-07 Score=83.98 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHH
Q 018307 205 FLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNAT 284 (358)
Q Consensus 205 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (358)
..+.+++++++|.+.+..|+.. ++.++ ...+....+.+.+.|+....... . .........+.....+++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~----~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~ 71 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHA----DKEPD--FLWWALLAHSVLLTPYGLWYLAQ--V---GWSRLPATFWLLLAISAV 71 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC----CchhH--HHHHHHHHHHHHHHHHHHHhccc--C---CCCCcchhhHHHHHHHHH
Confidence 5788999999999999999875 22233 23555566666666665542100 0 011112334555666777
Q ss_pred HHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhh
Q 018307 285 VAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSE 348 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~ 348 (358)
....+..+.+.+.++.++...+++.+..|+++.+++++++||+++..+++|.++++.|+.+...
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7777778888899999999999999999999999999999999999999999999999987654
No 46
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.69 E-value=2.4e-05 Score=71.01 Aligned_cols=287 Identities=13% Similarity=0.035 Sum_probs=168.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcc---cccccccHHHHHHHHHH
Q 018307 53 PHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELV---PIQHILSRKQFLKIFAL 129 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 129 (358)
+.+..++.+.+-.+++.+...-.|. .++.+++ .++. ...+++.++.....-....+ ..-...+...+...+..
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE-~~W~--v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWSWE-TMWS--VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCchh-HHHH--HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 3455666666666677766666676 3332333 1122 11112222222111101000 00111234556667788
Q ss_pred HHHHHHHHhhhhccccccchhHHHHHh-hhHHHHHHHHHHHHhcccc-------chHHHHHHHHHHHhhhhhcc----cc
Q 018307 130 SAIFSFSVVCGNTSLRYLPVSFNQAIG-ATTPFFTAIFAFLITCKKE-------SAEVYCALMPVVFGIVLASN----SE 197 (358)
Q Consensus 130 ~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~p~~~~~~~~~~~~e~~-------~~~~~~~~~~~~~Gv~l~~~----~~ 197 (358)
+++...++..+..+++++.+|...-+. .++.++..++..++++|-. ...-.+++++.++|+++... .|
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~ 159 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE 159 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 899999999999999999998877555 6788888888888887632 23567888899999998875 22
Q ss_pred c---------cchHHHHHHHHHHHHHHHHHH-------HHHHHhhcccCCCCCHHHHHHHHHH---HHHHHHHHHHHHh-
Q 018307 198 P---------LFHLFGFLVCVGSTAGRALKS-------VVQGILLTSEAEKLHSMNLLLYMAP---MSALILLPFTLYI- 257 (358)
Q Consensus 198 ~---------~~~~~G~~~~l~a~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~- 257 (358)
. .....|+++++++.+.+++|. ...+... +.+.++.....-+.. .+.++.-......
T Consensus 160 ~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~---~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~ 236 (345)
T PRK13499 160 RKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAA---ALGVDPLYAALPSYVVIMGGGAITNLGFCFIR 236 (345)
T ss_pred cccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhh---hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 123579999999999999999 4433321 234555544444433 3333222211111
Q ss_pred --cchhHHHHHhhhccc----hHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH----HhhhhhHHHHHHhhHhhcCCc
Q 018307 258 --EGNVAATTIEKASED----RFVLFLLLGNATVAYLVNLTNFLVTKHTSALTLQ----VLGNAKAAVAAVVSVLIFRNP 327 (358)
Q Consensus 258 --~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~l~~~~~~~~~~~~~ge~ 327 (358)
........ ...... ..-....++.|++-+..++.+...-++.+..... ....+..+++.+.|. ++||.
T Consensus 237 ~~k~~~~~~~-~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~ 314 (345)
T PRK13499 237 LAKNKDLSLK-ADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEW 314 (345)
T ss_pred HhhCCCcccc-hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhc
Confidence 00000000 011111 2233444666777666666666666666444333 333667788999998 59998
Q ss_pred cc------chhhhhHHHHHHHHHHhhh
Q 018307 328 VT------VMGMTGFAVTIMGVVLYSE 348 (358)
Q Consensus 328 ~~------~~~~~G~~lii~g~~~~~~ 348 (358)
=+ ...++|.+++++|..+...
T Consensus 315 K~a~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 315 KGASRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred cCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 77 5678999999999887654
No 47
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.68 E-value=1.4e-07 Score=84.55 Aligned_cols=209 Identities=16% Similarity=0.155 Sum_probs=120.1
Q ss_pred HHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcc-cccc---ch----
Q 018307 130 SAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASN-SEPL---FH---- 201 (358)
Q Consensus 130 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~-~~~~---~~---- 201 (358)
-+.+.++..+...|+.+.|.+..+-+.+...++..+++..++|||++++++.|+.+.++|..++.. ++.+ .+
T Consensus 57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l 136 (300)
T PF05653_consen 57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDEL 136 (300)
T ss_pred HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHH
Confidence 345677888999999999999999999999999999999999999999999999999999987652 2111 11
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHH-------HHHHHhcchhHHHHH
Q 018307 202 --------LFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILL-------PFTLYIEGNVAATTI 266 (358)
Q Consensus 202 --------~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~ 266 (358)
...+...... +...+.....+|.- ++ +........++++....+ .+....+++
T Consensus 137 ~~~~~~~~fl~y~~~~~~-~~~~L~~~~~~r~g---~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~------ 204 (300)
T PF05653_consen 137 IALLSQPGFLVYFILVLV-LILILIFFIKPRYG---RR--NILVYISICSLIGSFTVLSAKAISILIKLTFSGD------ 204 (300)
T ss_pred HHHhcCcceehhHHHHHH-HHHHHHHhhcchhc---cc--ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCc------
Confidence 1111111111 11111111122210 11 111000111111111100 000111111
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhh-hHHHHHHhhHhhcCCc--ccc----hhhhhHHHH
Q 018307 267 EKASEDRFVLFLLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNA-KAAVAAVVSVLIFRNP--VTV----MGMTGFAVT 339 (358)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l-~~~~~~~~~~~~~ge~--~~~----~~~~G~~li 339 (358)
.....+..|.+++....+....-...+.++++.++..+....+. -...+++-|.++|+|. .++ ....|..++
T Consensus 205 -~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~i 283 (300)
T PF05653_consen 205 -NQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLII 283 (300)
T ss_pred -hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 11123344555444444444444556778888887766655554 4456677778888875 455 356677888
Q ss_pred HHHHHHhhhhcc
Q 018307 340 IMGVVLYSEAKK 351 (358)
Q Consensus 340 i~g~~~~~~~~~ 351 (358)
+.|+++.+..|.
T Consensus 284 i~GV~lL~~~~~ 295 (300)
T PF05653_consen 284 IIGVFLLSSSKD 295 (300)
T ss_pred HHhhheeeccCc
Confidence 888888765443
No 48
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.60 E-value=1.7e-06 Score=79.82 Aligned_cols=137 Identities=12% Similarity=0.172 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHH
Q 018307 204 GFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNA 283 (358)
Q Consensus 204 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (358)
-....++..++|+...++.|..+ +.++++.....+-..+++++++|+....+.... ........+..+...+
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~---~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~-----~~~~~~~~~~~l~l~g 85 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVAT---SKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS-----LPPLSVSILSKIGLLG 85 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCcchHHHHHHHHHHH
Confidence 45667777899999999999997 578999999999999999998888766432110 0111223345555566
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhh------cCCcccchhhhhHHHHHHHHHHhhh
Q 018307 284 TVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLI------FRNPVTVMGMTGFAVTIMGVVLYSE 348 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~------~ge~~~~~~~~G~~lii~g~~~~~~ 348 (358)
++++.++...+..++++++...++..+..|+++.++++++ ++|+++..+++|.++.+.|+.+...
T Consensus 86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 6665566677889999999999999999999999999999 6999999999999999999887653
No 49
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.53 E-value=1.7e-06 Score=65.71 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=60.4
Q ss_pred HHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcc
Q 018307 131 AIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASN 195 (358)
Q Consensus 131 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~ 195 (358)
+++.....+...+++.+|.+.+..+.++.++++.+++++++|||+++++++|+.++++|++++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45677889999999999999999999999999999999999999999999999999999987653
No 50
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.51 E-value=7.1e-06 Score=66.38 Aligned_cols=132 Identities=10% Similarity=0.032 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-----cCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccc----c-c-----cHHHHHH
Q 018307 61 IASWYLSNIGVLLLNKYLLSF-----YGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQH----I-L-----SRKQFLK 125 (358)
Q Consensus 61 ~~~~~~~~~~~~~~~K~~~~~-----~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~----~-~-----~~~~~~~ 125 (358)
++...+......++.|..+++ .+.+ |..+..+....+.+++.+.....+..+..+ . . ....+..
T Consensus 5 ~l~s~~~~al~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (153)
T PF03151_consen 5 ALASSLFSALRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFL 83 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHH
Confidence 344445555556677887776 4666 888888888888888887766443332100 0 0 2244555
Q ss_pred HHHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhh
Q 018307 126 IFALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLA 193 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~ 193 (358)
.+..+++....+...+..++++++-+.+++.....+.+.+++.++++|+++..++.|+++.++|+++.
T Consensus 84 ~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 84 LILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 56667777888999999999999999999999999999999999999999999999999999999864
No 51
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.51 E-value=6.3e-06 Score=74.35 Aligned_cols=129 Identities=9% Similarity=-0.021 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHH-HHHHH
Q 018307 59 LIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAI-FSFSV 137 (358)
Q Consensus 59 ~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 137 (358)
+..++-.++.....+..|...++ .+ |..... ...++.+++.+....... ....+...+...+..+++ ..+++
T Consensus 151 ll~l~aa~~~a~~~v~~r~~~~~--~~-~~~~~~-~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 151 ALALGAGACWAIYILSGQRAGAE--HG-PATVAI-GSLIAALIFVPIGALQAG---EALWHWSILPLGLAVAILSTALPY 223 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--CC-chHHHH-HHHHHHHHHHHHHHHccC---cccCCHHHHHHHHHHHHHHHHHHH
Confidence 33344444444456666777655 33 555544 445555555554442211 111233344434455555 45678
Q ss_pred hhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhc
Q 018307 138 VCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLAS 194 (358)
Q Consensus 138 ~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~ 194 (358)
.++++++++.+++.++++..++|++..++++++++|+++..+++|.+++++|++...
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999998875
No 52
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.45 E-value=8.1e-06 Score=73.63 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHH-HHHHHhhhhccccccchhHHHHHhhhHHHHHHH
Q 018307 87 PIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAI-FSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAI 165 (358)
Q Consensus 87 p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~ 165 (358)
+...+.+++.++..++.+....... ......+...+...+..++. ...+..+.++++++.+++.++++..+.|++.++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i 255 (292)
T PRK11272 177 GMMAGAAEMLAAGVVLLIASLLSGE-RLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVL 255 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCC-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 5566778888887776665542221 11111234455566666665 467788999999999999999999999999999
Q ss_pred HHHHHhccccchHHHHHHHHHHHhhhhhccc
Q 018307 166 FAFLITCKKESAEVYCALMPVVFGIVLASNS 196 (358)
Q Consensus 166 ~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 196 (358)
+++++++|+++..+++|..+++.|+.+....
T Consensus 256 ~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 256 LGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887643
No 53
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.36 E-value=2.4e-05 Score=67.92 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHH
Q 018307 201 HLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLL 280 (358)
Q Consensus 201 ~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (358)
+..|+++++.+-+.|++--.+.|-+ ++.++.++..+-.+.+.++++.......... +..+ ...++..+..+.
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-----~~~~~~eIlahRviwS~~~~l~ll~~~r~~~--~~~~-~~~~p~~~~~~~ 76 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-----EPLPATEILAHRVIWSFPFMLALLFLLRQWR--ELKQ-LLKQPKTLLMLA 76 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHH-HHhCcHHHHHHH
Confidence 4469999999999999999999887 6788999999999999888776655543322 1111 223444555555
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhc
Q 018307 281 GNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAK 350 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~ 350 (358)
.+++.-..--....++..+-....+|..-+++|.+.+++|.++++|+++..|++..++...|+..-++..
T Consensus 77 l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 77 LTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 5555543333335567888899999999999999999999999999999999999999999998776543
No 54
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.35 E-value=1.6e-05 Score=71.75 Aligned_cols=129 Identities=15% Similarity=0.076 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHh
Q 018307 59 LIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVV 138 (358)
Q Consensus 59 ~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (358)
+++++-.+++....+++|...++ .+ |.... . ....+.+.+.....+ .. ....+.+.+...+..++...+++.
T Consensus 159 ~~~l~aa~~~A~~~v~~k~~~~~--~~-~~~~~--~-~~~~~~l~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~t~~~~~ 230 (295)
T PRK11689 159 GLAFIGAFIWAAYCNVTRKYARG--KN-GITLF--F-ILTALALWIKYFLSP-QP-AMVFSLPAIIKLLLAAAAMGFGYA 230 (295)
T ss_pred HHHHHHHHHHHHHHHHHhhccCC--CC-chhHH--H-HHHHHHHHHHHHHhc-Cc-cccCCHHHHHHHHHHHHHHHHHHH
Confidence 33444444445556667776554 33 54432 2 222233322222121 11 111233455555555666677899
Q ss_pred hhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcc
Q 018307 139 CGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASN 195 (358)
Q Consensus 139 ~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~ 195 (358)
+.++++++.+++..+.+.+..|++..++++++++|+++..+++|.++++.|+.+...
T Consensus 231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999999999999999999999999999987753
No 55
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.33 E-value=7.8e-06 Score=74.13 Aligned_cols=138 Identities=12% Similarity=0.006 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccc--------c-HHHHHHHH
Q 018307 57 TALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHIL--------S-RKQFLKIF 127 (358)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~--------~-~~~~~~~~ 127 (358)
..+.+.+..+++....+..|...++.+.+ |..++.++...+.+.+.+........+..... . ...+...+
T Consensus 146 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (302)
T TIGR00817 146 GFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSL 224 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHH
Confidence 44445555555555667778777632355 88999999988888877776532211100000 0 00111122
Q ss_pred HHHH-HHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcc
Q 018307 128 ALSA-IFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASN 195 (358)
Q Consensus 128 ~~~~-~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~ 195 (358)
..++ .+...+.+.+.+++++++.++++.....|+++.++++++++|+++..+++|.++++.|+.+...
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 225 VAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 2222 2333345667899999999999999999999999999999999999999999999999998764
No 56
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.32 E-value=1.9e-05 Score=61.46 Aligned_cols=123 Identities=13% Similarity=0.044 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHH
Q 018307 203 FGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGN 282 (358)
Q Consensus 203 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (358)
.|+++.+.+.++.+...++.|+-++ +.+ ..+.... .. . .... .. ++ +..+..+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~--~~g--~~~~~~~-~~-~----~~~~-~~--------------~p--~~~i~lg 54 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMS--RLP--LLSHAWD-FI-A----ALLA-FG--------------LA--LRAVLLG 54 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHh--hCC--CccchhH-HH-H----HHHH-Hh--------------cc--HHHHHHH
Confidence 3788899999999999999998762 111 1111000 00 0 0000 00 11 0011122
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHh--hcCCcccchhhhhHHHHHHHHHHhhhhccc
Q 018307 283 ATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVL--IFRNPVTVMGMTGFAVTIMGVVLYSEAKKR 352 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~--~~ge~~~~~~~~G~~lii~g~~~~~~~~~~ 352 (358)
.++.....+.+..++++.+...+..+..+.++...+.++. +|||++|+.+++|.++++.|+++.++.++|
T Consensus 55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 2222233355677889999999998888888778777774 899999999999999999999998765544
No 57
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.31 E-value=3.9e-05 Score=69.41 Aligned_cols=140 Identities=11% Similarity=0.022 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc----cccccHHHHHHHHHHHHH
Q 018307 57 TALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPI----QHILSRKQFLKIFALSAI 132 (358)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 132 (358)
..+++++-..++....+.+|...++.+-+.......+..+.+.+.............. ....+...+...+..+++
T Consensus 144 G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~ 223 (299)
T PRK11453 144 GFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFV 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHH
Confidence 3444444445555556667776544222213344455555554443333221111100 011233455555565654
Q ss_pred H-HHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccc
Q 018307 133 F-SFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNS 196 (358)
Q Consensus 133 ~-~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 196 (358)
. ..++.+.+.++++.+++.++.+....|++..++++++++|+++..+++|.+++++|+.+...+
T Consensus 224 ~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 224 ATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 4 567889999999999999999999999999999999999999999999999999999887643
No 58
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.24 E-value=5.9e-05 Score=69.76 Aligned_cols=138 Identities=12% Similarity=0.047 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCchHHHHHHHHHHHHHHHHHHHHHhhccccc--------cccc---
Q 018307 56 FTALIIASWYLSNIGVLLLNKYLLSFYG-----YRYPIFLTMLHMISCAVYSYVAIHFLELVPIQ--------HILS--- 119 (358)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~K~~~~~~~-----~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~--------~~~~--- 119 (358)
...+.+.+-.+++....++.|...++++ .+ +..+..+....+++++.++.......+.. ....
T Consensus 194 ~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 194 LAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLT-ASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 3444555555666666777888876532 33 55566666777777776665422111000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhc
Q 018307 120 RKQFLKIFALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLAS 194 (358)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~ 194 (358)
.......+..++.+.+.+.+.+++++++++.++++.....|+++.++++++++|+++..+++|.+++++|+.+..
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 111122233344455555566679999999999999999999999999999999999999999999999998764
No 59
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.17 E-value=6.3e-05 Score=57.50 Aligned_cols=73 Identities=15% Similarity=0.230 Sum_probs=59.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccc
Q 018307 279 LLGNATVAY-LVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKR 352 (358)
Q Consensus 279 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~ 352 (358)
.+..++++. ..+...+.+.++.++ .+.....+.|+++.++++++++|+++..+++|.++++.|+.+..+.+..
T Consensus 37 ~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 37 LILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 334344443 555667778899885 7889999999999999999999999999999999999999998776543
No 60
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.09 E-value=6.1e-05 Score=67.79 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHH
Q 018307 204 GFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNA 283 (358)
Q Consensus 204 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (358)
|++++++++++|+...+..|+. + +.++.+... ..++.+++.........+. ......+..-+.+|
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~---~--g~~~~~~~~--~~~g~l~~~~~~~~~~~~~--------~~~~~~~~~g~l~G 66 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKI---G--GGPYSQTLG--TTFGALILSIAIAIFVLPE--------FWALSIFLVGLLSG 66 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhcc---C--CCHHHHHHH--HHHHHHHHHHHHHHHhCCc--------ccccHHHHHHHHHH
Confidence 6789999999999999999986 2 555555542 3444444433333221111 12355566666777
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHhhh-hhHHHHHHhhHhhcCCcccchh----hhhHHHHHHHHHHhhhhc
Q 018307 284 TVAYLVNLTNFLVTKHTSALTLQVLGN-AKAAVAAVVSVLIFRNPVTVMG----MTGFAVTIMGVVLYSEAK 350 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~s~~~~-l~~~~~~~~~~~~~ge~~~~~~----~~G~~lii~g~~~~~~~~ 350 (358)
+.-...|+.++.++++.+....-.+.+ +.++.+.+++.+++||+.+..+ ++|.++++.|+++....+
T Consensus 67 ~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 67 AFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 777777888899999999998877777 7888999999999999999999 999999999998876654
No 61
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=1.6e-05 Score=69.72 Aligned_cols=210 Identities=17% Similarity=0.127 Sum_probs=123.4
Q ss_pred HHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccccccch-------
Q 018307 129 LSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNSEPLFH------- 201 (358)
Q Consensus 129 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~~------- 201 (358)
.-+.+.++-.+.+.|+.+.|++..+-+-+++.++.++++..+++||++....+|+.+.++|-.+++...++.+
T Consensus 70 G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~e 149 (335)
T KOG2922|consen 70 GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEE 149 (335)
T ss_pred HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHH
Confidence 3456788899999999999999999999999999999999999999999999999999999887763322111
Q ss_pred ------HHHHHHHHHHHH-HHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHH--------HH--HHhcchhHHH
Q 018307 202 ------LFGFLVCVGSTA-GRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLP--------FT--LYIEGNVAAT 264 (358)
Q Consensus 202 ------~~G~~~~l~a~~-~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~--~~~~~~~~~~ 264 (358)
-.+.+.-.+-.+ ...+-..+.+ .+.....++.|..+.+.+-.+- .+ ..+.+.
T Consensus 150 l~~~~~~~~Fliy~~~iil~~~il~~~~~-------p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~---- 218 (335)
T KOG2922|consen 150 VWELATEPGFLVYVIIIILIVLILIFFYA-------PRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN---- 218 (335)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHheeec-------ccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC----
Confidence 012111111111 1111111111 1111223444444444332110 00 011111
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhh-hHHHHHHhhHhhcCCc--ccc----hhhhhHH
Q 018307 265 TIEKASEDRFVLFLLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNA-KAAVAAVVSVLIFRNP--VTV----MGMTGFA 337 (358)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l-~~~~~~~~~~~~~ge~--~~~----~~~~G~~ 337 (358)
.....+..|..++....+....-...+.+++..++..++...++ -..++++.|.++|.|- .+. ....|..
T Consensus 219 ---~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ 295 (335)
T KOG2922|consen 219 ---NQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFV 295 (335)
T ss_pred ---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHH
Confidence 11112233433333333322222224567777777766666655 5667788888889874 333 3678888
Q ss_pred HHHHHHHHhhhhccc
Q 018307 338 VTIMGVVLYSEAKKR 352 (358)
Q Consensus 338 lii~g~~~~~~~~~~ 352 (358)
.++.|+++.+..|.+
T Consensus 296 ti~~G~flL~~~kd~ 310 (335)
T KOG2922|consen 296 TIFLGIFLLHRTKDM 310 (335)
T ss_pred HhhheeeEeeeeccc
Confidence 999998888655443
No 62
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.98 E-value=0.0002 Score=64.95 Aligned_cols=132 Identities=14% Similarity=0.115 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 018307 214 GRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNATVAYLVNLTN 293 (358)
Q Consensus 214 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (358)
++..+.+.+|++.+++.....+..+++.+.....+...+.......+. . ....+.-....+++.++.....
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK------S---RKIPLKKYAILSFLFFLASVLS 81 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC------C---CcChHHHHHHHHHHHHHHHHHH
Confidence 344566788888743222224777888887777766555444322010 0 1111222333345555666677
Q ss_pred HHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccccc
Q 018307 294 FLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRSK 354 (358)
Q Consensus 294 ~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~~~ 354 (358)
+.++++.+..+..+....+++.+++++.+++|++.+..++++.+++..|+.+....+.+++
T Consensus 82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 7889999999999999999999999999999999999999999999999999988765543
No 63
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.94 E-value=5.5e-05 Score=58.93 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHH--HhccccchHHHHHHHHHHHhhhhhcccc
Q 018307 126 IFALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFL--ITCKKESAEVYCALMPVVFGIVLASNSE 197 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~--~~~e~~~~~~~~~~~~~~~Gv~l~~~~~ 197 (358)
....-+++.++..+.++++++.|++.+.-+.+..+.++.+.++. ++||+++..+++|++++++|++++..++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 34444677889999999999999999999999999888888874 8999999999999999999999987543
No 64
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.82 E-value=0.0012 Score=59.08 Aligned_cols=132 Identities=19% Similarity=0.181 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHH-HHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHH-
Q 018307 57 TALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTM-LHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFS- 134 (358)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 134 (358)
.....+.-..+.....+.+|... + .+ +..... +++............ ...+ .......+......++...
T Consensus 155 g~~~~l~a~~~~a~~~~~~~~~~-~--~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~~ 226 (292)
T COG0697 155 GLLLALAAALLWALYTALVKRLS-R--LG-PVTLALLLQLLLALLLLLLFFL--SGFG--APILSRAWLLLLYLGVFSTG 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-C--CC-hHHHHHHHHHHHHHHHHHHHHh--cccc--ccCCHHHHHHHHHHHHHHHH
Confidence 33334444444445566667665 3 23 555555 454422222222221 1111 1234456666667776665
Q ss_pred HHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccc
Q 018307 135 FSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNS 196 (358)
Q Consensus 135 ~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 196 (358)
.++.+.+++++..+++..+.+..+.|++..++++++++|+++..+++|.++++.|+.+....
T Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999999999999999999999999999999987644
No 65
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.75 E-value=0.00013 Score=55.69 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhhhccccccchhHHHHHh-hhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccc
Q 018307 126 IFALSAIFSFSVVCGNTSLRYLPVSFNQAIG-ATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNS 196 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 196 (358)
.+...+++..++.+...+++++|.+.+..+- ....+.+.+.+.+++||++++.+++++.++++|++.+...
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 4555677888999999999999999998885 6899999999999999999999999999999999988643
No 66
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.73 E-value=0.00032 Score=53.20 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=51.0
Q ss_pred HHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhh
Q 018307 291 LTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYS 347 (358)
Q Consensus 291 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~ 347 (358)
+.....+++.+...+-..-.+.++.+.++|+++|||+++..+++|.++++.|+.+..
T Consensus 52 ~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 52 VLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 445567889999998888889999999999999999999999999999999988754
No 67
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.64 E-value=0.0013 Score=55.96 Aligned_cols=127 Identities=10% Similarity=0.021 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHH-HHHH
Q 018307 59 LIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIF-SFSV 137 (358)
Q Consensus 59 ~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 137 (358)
.+...-..++....+..|.+-+. -+ .-.-+..-+.+++++.+++... ...+ ...+.......+..+++. .+-+
T Consensus 151 ~~Al~AG~~Wa~YIv~G~r~g~~--~~-g~~g~a~gm~vAaviv~Pig~~-~ag~--~l~~p~ll~laLgvavlSSalPY 224 (292)
T COG5006 151 ALALGAGACWALYIVLGQRAGRA--EH-GTAGVAVGMLVAALIVLPIGAA-QAGP--ALFSPSLLPLALGVAVLSSALPY 224 (292)
T ss_pred HHHHHHhHHHHHHHHHcchhccc--CC-CchHHHHHHHHHHHHHhhhhhh-hcch--hhcChHHHHHHHHHHHHhcccch
Confidence 33444445556666667776643 22 3455667778888888877651 1111 122233333334445554 4567
Q ss_pred hhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhh
Q 018307 138 VCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIV 191 (358)
Q Consensus 138 ~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~ 191 (358)
.+...+++++|..++.++.+..|.+..+.++++++|++|..||.++..++.+..
T Consensus 225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 888999999999999999999999999999999999999999999999887765
No 68
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.64 E-value=0.0018 Score=51.10 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCC-CHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHH
Q 018307 205 FLVCVGSTAGRALKSVVQGILLTSEAEKL-HSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNA 283 (358)
Q Consensus 205 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (358)
.++++++.++-+++.....++- ++. ||+.........+++.+.......++.... ... .. .|+ ...+|
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~----~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~---~~~--~~-p~w-~~lGG 71 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLG----KALGSPLVASFISFGVGFILLLIILLITGRPSLA---SLS--SV-PWW-AYLGG 71 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhCccHHHHHHHHHHHHHHHHHHHHHhcccccc---hhc--cC-ChH-HhccH
Confidence 5678888888888888888875 233 588888888899988888777776554211 111 11 122 23378
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHhhhh-hHHHHHHhhHh-hc---CCcccchhhhhHHHHHHHHHH
Q 018307 284 TVAYLVNLTNFLVTKHTSALTLQVLGNA-KAAVAAVVSVL-IF---RNPVTVMGMTGFAVTIMGVVL 345 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l-~~~~~~~~~~~-~~---ge~~~~~~~~G~~lii~g~~~ 345 (358)
+++..+..+....+.+.++......... +.+.+.+++.+ +| .+++++.+++|.++++.|+.+
T Consensus 72 ~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 72 LLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 8888887888888999999988887777 55666777775 33 467999999999999999863
No 69
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.64 E-value=0.0017 Score=59.12 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHH
Q 018307 203 FGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGN 282 (358)
Q Consensus 203 ~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (358)
.+.+++-.-+++-+..++..+.+..+ ..+. |....+++...-.++..+......+. ..+.. ....-|+..+.-
T Consensus 13 ~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~-P~~Qs~~~Y~~l~~vy~~~~~~r~~~--~~~~~---~~~~~~w~y~ll 85 (334)
T PF06027_consen 13 IVLLLGQVLSLCITGTGTFSSLLANK-GVNI-PTFQSFFNYVLLALVYTPILLYRRGF--KKWLK---VLKRPWWKYFLL 85 (334)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhc-CccC-cHHHHHHHHHHHHHHHhhhhhhcccc--ccchh---hcchhHHHHHHH
Confidence 44555555556666666666666421 2222 33334444443333333433332221 11111 111223333444
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhc
Q 018307 283 ATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAK 350 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~ 350 (358)
+++-...|+....+.++++.+.+.+......+++++++++++++++++.+++|+++++.|+.+.....
T Consensus 86 a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 86 ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 77888889999999999999999999999999999999999999999999999999999998877654
No 70
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.63 E-value=0.0011 Score=49.77 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhhhhccccccchhHHHHHhh-hHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhc
Q 018307 126 IFALSAIFSFSVVCGNTSLRYLPVSFNQAIGA-TTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLAS 194 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~-~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~ 194 (358)
.+...+++..++.+...+++++|.+.+..+-+ ...+.+.+.+.+++||++++.+++++.+++.|++...
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 44556677788889999999999999887765 7788889999999999999999999999999998753
No 71
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.60 E-value=0.00041 Score=52.35 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhhhhccccccchhHHHHHh-hhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccc
Q 018307 127 FALSAIFSFSVVCGNTSLRYLPVSFNQAIG-ATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNS 196 (358)
Q Consensus 127 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 196 (358)
...-+++..++.+...+++++|.+.+..+. ....+.+.+.+++++||++++.+++|+.++++|++.+...
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344566778888889999999999998885 4788889999999999999999999999999999988643
No 72
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.59 E-value=0.00043 Score=51.66 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhhhhccccccchhHHHHHhh-hHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhc
Q 018307 124 LKIFALSAIFSFSVVCGNTSLRYLPVSFNQAIGA-TTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLAS 194 (358)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~-~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~ 194 (358)
...+...+++..++.+...+++++|.+.+..+-. ...+.+.+.+++++||++++.+++++.+++.|++...
T Consensus 30 ~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 30 TPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 3344556677888899999999999999887775 8888999999999999999999999999999999875
No 73
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.00044 Score=51.07 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHhhhhccccccchhHHHHHh-hhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcc
Q 018307 124 LKIFALSAIFSFSVVCGNTSLRYLPVSFNQAIG-ATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASN 195 (358)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~ 195 (358)
...+..-+++..++.+...+++++|.+++..+- ..-.+.+.+.+++++||+.+..+++++.+.+.|++....
T Consensus 31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 334555667788889999999999999887665 577888889999999999999999999999999997754
No 74
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.51 E-value=2.2e-05 Score=66.22 Aligned_cols=268 Identities=17% Similarity=0.209 Sum_probs=172.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHH
Q 018307 53 PHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAI 132 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (358)
+.+.+++-++.|+..-... ||.-- . |...+.-..+.+.++...... . .. +..+...+..-+..+++
T Consensus 3 ~~liaL~P~l~WGsip~v~---~k~GG-----~-p~qQ~lGtT~GALifaiiv~~-~-~~---p~~T~~~~iv~~isG~~ 68 (288)
T COG4975 3 DLLIALLPALGWGSIPLVA---NKFGG-----K-PYQQTLGTTLGALIFAIIVFL-F-VS---PELTLTIFIVGFISGAF 68 (288)
T ss_pred hHHHHHHHHHHhcccceee---eecCC-----C-hhHhhhhccHHHHHHHHHHhe-e-ec---CccchhhHHHHHHhhhH
Confidence 4566677777776543221 33221 2 666665555555444444333 2 12 22445555666777888
Q ss_pred HHHHHhhhhccccccchhHHHHHh-hhHHHHHHHHHHHHhccccchHH----HHHHHHHHHhhhhhccccc--------c
Q 018307 133 FSFSVVCGNTSLRYLPVSFNQAIG-ATTPFFTAIFAFLITCKKESAEV----YCALMPVVFGIVLASNSEP--------L 199 (358)
Q Consensus 133 ~~~~~~~~~~al~~~~~~~~~~l~-~~~p~~~~~~~~~~~~e~~~~~~----~~~~~~~~~Gv~l~~~~~~--------~ 199 (358)
...++..++.+.+++.+|.+.-+. .+..+-+.+++.+.++|-.+..+ ..++++.+.|+.+....|. +
T Consensus 69 Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~ 148 (288)
T COG4975 69 WSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPS 148 (288)
T ss_pred hhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChH
Confidence 899999999999999988877554 57778888899999999766544 3567778888888775442 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHH
Q 018307 200 FHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLL 279 (358)
Q Consensus 200 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (358)
+--.|+...+.|.+.|-.|-+..+.. +.|.+....-|+.-..+..+.+...-+.... +... +.-
T Consensus 149 n~kkgi~~L~iSt~GYv~yvvl~~~f------~v~g~saiLPqAiGMv~~ali~~~~~~~~~~---------~K~t-~~n 212 (288)
T COG4975 149 NLKKGIVILLISTLGYVGYVVLFQLF------DVDGLSAILPQAIGMVIGALILGFFKMEKRF---------NKYT-WLN 212 (288)
T ss_pred hhhhheeeeeeeccceeeeEeeeccc------cccchhhhhHHHHHHHHHHHHHhhcccccch---------HHHH-HHH
Confidence 12468888889999999999988775 2344444444333221111112221111111 1222 223
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchh----hhhHHHHHHHHHHhhhhc
Q 018307 280 LGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMG----MTGFAVTIMGVVLYSEAK 350 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~----~~G~~lii~g~~~~~~~~ 350 (358)
+..|+.....|+..+.+.++.+-.+.=.++.+.-+.+.+-|.++++|+-|..+ ++|.+++++|..+....|
T Consensus 213 ii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 213 IIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred HhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence 44566666677777777788887777777778889999999999999988764 578888888877655443
No 75
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.45 E-value=0.0027 Score=55.60 Aligned_cols=105 Identities=9% Similarity=0.009 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 018307 69 IGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVVCGNTSLRYLP 148 (358)
Q Consensus 69 ~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 148 (358)
.......|+.- .+ |+....-|.....+-..++..+. +++..+|..++. +..++.+..++.+...+.+...
T Consensus 151 ~~Y~~~~~~~~----~~-~~~~~lPqaiGm~i~a~i~~~~~----~~~~~~k~~~~n-il~G~~w~ignl~~~is~~~~G 220 (269)
T PF06800_consen 151 WIYSVIPKAFH----VS-GWSAFLPQAIGMLIGAFIFNLFS----KKPFFEKKSWKN-ILTGLIWGIGNLFYLISAQKNG 220 (269)
T ss_pred HHHHHHHHhcC----CC-hhHhHHHHHHHHHHHHHHHhhcc----cccccccchHHh-hHHHHHHHHHHHHHHHhHHhcc
Confidence 33344455522 33 66666666544433333333312 222234545554 5678999999999999999999
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHH
Q 018307 149 VSFNQAIGATTPFFTAIFAFLITCKKESAEVYCAL 183 (358)
Q Consensus 149 ~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~ 183 (358)
.+++..+.++.++...+.+.+++||+-+++++...
T Consensus 221 ~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~ 255 (269)
T PF06800_consen 221 VATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYT 255 (269)
T ss_pred chhhhhHHhHHHHHHHhhhheEEEecCchhhHHHH
Confidence 99999999999999999999999999888876543
No 76
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.43 E-value=0.0047 Score=47.28 Aligned_cols=59 Identities=17% Similarity=0.350 Sum_probs=46.7
Q ss_pred HHHHhccchh-HHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccc
Q 018307 294 FLVTKHTSAL-TLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKR 352 (358)
Q Consensus 294 ~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~ 352 (358)
..++++.+.. .+++..-+..+.+.++|+++|||++|+.+++|+.+++.|+...+...++
T Consensus 48 s~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~ 107 (120)
T PRK10452 48 SFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRK 107 (120)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3445655543 3455566788999999999999999999999999999999988765543
No 77
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.41 E-value=0.0038 Score=47.08 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=46.3
Q ss_pred HHHHhccchh-HHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhc
Q 018307 294 FLVTKHTSAL-TLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAK 350 (358)
Q Consensus 294 ~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~ 350 (358)
..++++.+.. .+++..-+..+.+.++|+++|||++++.+++|+.+++.|+...+...
T Consensus 48 ~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3446666543 44555667889999999999999999999999999999999987654
No 78
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.34 E-value=0.0014 Score=57.30 Aligned_cols=79 Identities=22% Similarity=0.210 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccc
Q 018307 274 FVLFLLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKR 352 (358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~ 352 (358)
........-+++....|...+..+++.+|.++.+....|.+++.++++++++++++..||++..+...|+.+.......
T Consensus 15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3345566777778888888999999999999999999999999999999999999999999999999999988766544
No 79
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.31 E-value=0.011 Score=44.37 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=44.2
Q ss_pred HHHhccch-hHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhh
Q 018307 295 LVTKHTSA-LTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYS 347 (358)
Q Consensus 295 ~~~~~~~~-~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~ 347 (358)
.++++.+. +.+++..-+..+.+.+.|+++|||++++.+++|+++++.|+...+
T Consensus 54 ~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 54 QAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34555554 456777788889999999999999999999999999999998753
No 80
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.22 E-value=0.0097 Score=54.27 Aligned_cols=139 Identities=14% Similarity=0.028 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHH--HHHHHH-HhcchhHHHHHhhhccchHHHH
Q 018307 201 HLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALI--LLPFTL-YIEGNVAATTIEKASEDRFVLF 277 (358)
Q Consensus 201 ~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 277 (358)
...|+++++++++|++-+.+-+|+. +.-++|.. |. ..+.+. +.|+.. ....+...+ .....+...+.
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~------k~w~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~--~~~~~~~~~~~ 74 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV------KKWSWETM-WS-VGGIFSWLILPWLIAALLLPDFWA--YYSSFSGSTLL 74 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc------CCCchhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHH--HHHhcCHHHHH
Confidence 4579999999999999999988873 22355555 43 222211 122111 111111111 12224566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHh-hhhhHHHHHHhhHhhcCCcc---c----chhhhhHHHHHHHHHHhhhh
Q 018307 278 LLLGNATVAYLVNLTNFLVTKHTSALTLQVL-GNAKAAVAAVVSVLIFRNPV---T----VMGMTGFAVTIMGVVLYSEA 349 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~l~~~~~~~~~~~~~ge~~---~----~~~~~G~~lii~g~~~~~~~ 349 (358)
..+.+|++--..|...+..+++.+....-.+ .-+..+.+.+++.+++||-. + ....+|.+++++|+.+..+.
T Consensus 75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888888888888888888886655444 44578889999999998643 2 34788999999999998873
No 81
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.014 Score=43.24 Aligned_cols=55 Identities=20% Similarity=0.348 Sum_probs=46.4
Q ss_pred HHHhccch-hHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhh
Q 018307 295 LVTKHTSA-LTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEA 349 (358)
Q Consensus 295 ~~~~~~~~-~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~ 349 (358)
..+|+.+- +.+++.+-+-.+.+.+.|+++|||++++.+++|..+++.|+...+..
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 34566553 45678888899999999999999999999999999999999887654
No 82
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.07 E-value=0.029 Score=44.28 Aligned_cols=121 Identities=10% Similarity=0.048 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 018307 68 NIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVVCGNTSLRYL 147 (358)
Q Consensus 68 ~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 147 (358)
......+|-.+-+. ...|+.-+++.+..+.+.+.++..+.++.+.+. ..+.+|+ ....+++......+..+....+
T Consensus 13 i~~q~~~N~~L~~~--~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~-~~~~p~w-~~lGG~lG~~~V~~~~~~vp~l 88 (138)
T PF04657_consen 13 IALQAAFNGQLGKA--LGSPLVASFISFGVGFILLLIILLITGRPSLAS-LSSVPWW-AYLGGLLGVFFVLSNIILVPRL 88 (138)
T ss_pred HHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhcccccch-hccCChH-HhccHHHHHHHHHHHHHHhhhh
Confidence 33334445555444 334999999999999999888777555432211 2222333 3447888888888999999999
Q ss_pred chhHHHHHhh-hHHHHHHHHHHH----HhccccchHHHHHHHHHHHhhhh
Q 018307 148 PVSFNQAIGA-TTPFFTAIFAFL----ITCKKESAEVYCALMPVVFGIVL 192 (358)
Q Consensus 148 ~~~~~~~l~~-~~p~~~~~~~~~----~~~e~~~~~~~~~~~~~~~Gv~l 192 (358)
+++....+.- -+.+..+++..+ .-|++++..|.+|+.++++|+.+
T Consensus 89 G~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 89 GAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9888776664 455555556653 23678999999999999999864
No 83
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.054 Score=48.83 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcch---hH-HHHHhhhccchHHHHHHH
Q 018307 205 FLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGN---VA-ATTIEKASEDRFVLFLLL 280 (358)
Q Consensus 205 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~ 280 (358)
.+..+...+-.+......|...++++.+..|....+..-+.-.++........+.. .. .+........+.....+.
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~ 96 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS 96 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence 33344444455555555555543334456677777777666665555444432211 11 111111111222344455
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhh
Q 018307 281 GNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSE 348 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~ 348 (358)
.-+++..+-|...+..+.+.+|.++++...++...+.+++.++++++++..||...++...|+.+...
T Consensus 97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 55666667777788899999999999999999999999999999999999999999999999998873
No 84
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.95 E-value=0.027 Score=42.07 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=45.0
Q ss_pred HHhccc-hhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhh
Q 018307 296 VTKHTS-ALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSE 348 (358)
Q Consensus 296 ~~~~~~-~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~ 348 (358)
++++.+ .+.+++..-+..+.+.+.|+++|||++++.+++|+.+++.|+...+.
T Consensus 49 al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 49 AMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 455555 35567888889999999999999999999999999999999988643
No 85
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.91 E-value=0.0026 Score=46.56 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhhccccccchhHHHHHh-hhHHHHHHHHHHHHhccccchHHHHHHHHH
Q 018307 128 ALSAIFSFSVVCGNTSLRYLPVSFNQAIG-ATTPFFTAIFAFLITCKKESAEVYCALMPV 186 (358)
Q Consensus 128 ~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~ 186 (358)
....++..+..+...+++++|.+.+..+. ....+.+.+.+.+++||+++..++.++.++
T Consensus 34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33447788889999999999999987665 599999999999999999999999998764
No 86
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.85 E-value=0.0086 Score=53.97 Aligned_cols=121 Identities=19% Similarity=0.129 Sum_probs=81.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHH
Q 018307 200 FHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLL 279 (358)
Q Consensus 200 ~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (358)
+...|..+++.++++.+....++|+-..+.+++ ...-- .. +.... ....|+.-
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~--~~~~~--~~--------~~~~l---------------~~~~W~~G 56 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRG--SLRAG--SG--------GRSYL---------------RRPLWWIG 56 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccccc--ch--------hhHHH---------------hhHHHHHH
Confidence 456899999999999999999999975322210 00000 00 00000 01112221
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhc
Q 018307 280 LGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAK 350 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~ 350 (358)
......+. ...+.++...++..++.++.+..+++.+++..++||+++...++|.++++.|..+.....
T Consensus 57 ~~~~~~g~---~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 57 LLLMVLGE---ILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred HHHHhcch---HHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 12222233 233456788999999999999999999999999999999999999999999988765443
No 87
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.84 E-value=0.018 Score=49.55 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh
Q 018307 126 IFALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVL 192 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l 192 (358)
.....+..+.+..+..+.++|.+..+..+...+.++++.+++.++++|+++..+|.|..+++.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3344566677888899999999999999999999999999999999999999999999999988754
No 88
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.044 Score=43.43 Aligned_cols=137 Identities=14% Similarity=0.148 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHH
Q 018307 202 LFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLG 281 (358)
Q Consensus 202 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (358)
....++++++.++-..+....-++. +.--+|..-.......+++.+.......++...... . ....|+.. .
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~---~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~--~---~~~pwW~~-~ 74 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLA---RYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAA--V---ASAPWWAW-I 74 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHH---HHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhh--c---cCCchHHH-H
Confidence 4567788888888888888888875 222257777777778888777766666544322221 1 11122322 3
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHhhhh-hHHHHHHhhHhhc-C---CcccchhhhhHHHHHHHHHHhh
Q 018307 282 NATVAYLVNLTNFLVTKHTSALTLQVLGNA-KAAVAAVVSVLIF-R---NPVTVMGMTGFAVTIMGVVLYS 347 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l-~~~~~~~~~~~~~-g---e~~~~~~~~G~~lii~g~~~~~ 347 (358)
+|+++..+-........+.++++...+... +.+.+.+++-+=+ | .+++...++|+++++.|+++..
T Consensus 75 GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 75 GGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred ccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 446666665666667788887776665554 5566666665433 3 4689999999999999965544
No 89
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.65 E-value=0.0051 Score=55.36 Aligned_cols=140 Identities=11% Similarity=0.019 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHHH-HHHHHhhccccc----ccccHHHHHHH
Q 018307 54 HIFTALIIASWYLSNIGVLLLNKYLLS--FYGYRYPIFLTMLHMISCAVYSY-VAIHFLELVPIQ----HILSRKQFLKI 126 (358)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~K~~~~--~~~~~~p~~l~~~r~~~~~~~l~-~~~~~~~~~~~~----~~~~~~~~~~~ 126 (358)
.....+....+.+.+..-.++.|.++. +++.+ ++.+...+.-.+.+.+. ++.... ..+.. ...+.-.....
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYV-EGNKFVGFLTAPWFVTFLIL 238 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhh-cccceeeeeccccchhhHHH
Confidence 456667777777888888888888884 45566 88888888777777777 554421 11111 10222224444
Q ss_pred HHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcc
Q 018307 127 FALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASN 195 (358)
Q Consensus 127 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~ 195 (358)
...+++....+...+..+..+++=++++.....=+++.+.++++++++.++.+.+|.++.++|+.+...
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 555566677788889999999999999999999999999999999999999999999999999998763
No 90
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.56 E-value=0.004 Score=46.86 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhhccccccchhHHHHH-hhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhh
Q 018307 129 LSAIFSFSVVCGNTSLRYLPVSFNQAI-GATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLA 193 (358)
Q Consensus 129 ~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~ 193 (358)
.=+++-.+.+.+++.+...|.|.+.-+ ++++-+||.+.++++.+|..++++++|+.+++.|+.+.
T Consensus 47 pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 47 PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 345667788888999999999988877 59999999999988888888999999999999998764
No 91
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.18 E-value=0.0019 Score=55.46 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHH
Q 018307 202 LFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLG 281 (358)
Q Consensus 202 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (358)
..|..+..++ ..+-...+..++.. ..+|.++--.-.+.-.+...|..++...+... + .... ..+++
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~-----e~~p~e~a~~r~l~~mlit~pcliy~~~~v~g----p--~g~R--~~LiL 102 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVL-----ENDPMELASFRLLVRMLITYPCLIYYMQPVIG----P--EGKR--KWLIL 102 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhh-----ccChhHhhhhhhhhehhhhheEEEEEeeeeec----C--CCcE--EEEEe
Confidence 4577777777 66667777777664 23555554444333333333333332221100 0 0111 11234
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhh
Q 018307 282 NATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEA 349 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~ 349 (358)
=|+.++..-+..+++.++.+-..+.++....|+++++++|++++|++|....+|..+.+.|+.+..+.
T Consensus 103 Rg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 103 RGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred ehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 45566655566778889999999999999999999999999999999999999999999999988764
No 92
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.15 Score=44.93 Aligned_cols=139 Identities=11% Similarity=0.021 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc-c--ccccHHHHHHHHHHH
Q 018307 54 HIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPI-Q--HILSRKQFLKIFALS 130 (358)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~ 130 (358)
....+.++..+.+.=.......+.++..++.. ++.+.+.-.+...+.-.......+.... . -....+.++.++..+
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s-~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s 248 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVS-SLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS 248 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCcc-HhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence 45666666666665555555667777776666 6655555555454444433321111110 0 013567788999999
Q ss_pred HHHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhh
Q 018307 131 AIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLA 193 (358)
Q Consensus 131 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~ 193 (358)
++.++++.+.++-++.-.+=+.+.+..+-=++.++++.+.++.+.++.+|.|+.+.+.|..+=
T Consensus 249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~ 311 (327)
T KOG1581|consen 249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLE 311 (327)
T ss_pred HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHH
Confidence 999999999999999888888888999999999999999999999999999999999887643
No 93
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.71 E-value=0.0087 Score=50.90 Aligned_cols=136 Identities=10% Similarity=0.117 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHH
Q 018307 204 GFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNA 283 (358)
Q Consensus 204 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (358)
.++++++=++.|+.--....|. +-+|.+...-..+-+.++.+....+.. | ..+...+..-+.+|
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~------GG~p~qQ~lGtT~GALifaiiv~~~~~-p---------~~T~~~~iv~~isG 66 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF------GGKPYQQTLGTTLGALIFAIIVFLFVS-P---------ELTLTIFIVGFISG 66 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec------CCChhHhhhhccHHHHHHHHHHheeec-C---------ccchhhHHHHHHhh
Confidence 4677788888888665554443 334555554444434333333333321 1 12455566667777
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHhhhh-hHHHHHHhhHhhcCCcccchh----hhhHHHHHHHHHHhhhhcccccc
Q 018307 284 TVAYLVNLTNFLVTKHTSALTLQVLGNA-KAAVAAVVSVLIFRNPVTVMG----MTGFAVTIMGVVLYSEAKKRSKV 355 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l-~~~~~~~~~~~~~ge~~~~~~----~~G~~lii~g~~~~~~~~~~~~~ 355 (358)
+.-.+.+...+.+.+..+...+...++- +.+-+.+++++.|||-.++.+ .+..++++.|+++-.+.++.+|+
T Consensus 67 ~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~ 143 (288)
T COG4975 67 AFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE 143 (288)
T ss_pred hHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccc
Confidence 7777777778888888877777666554 677889999999999988764 34668889999888877664333
No 94
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.54 E-value=0.023 Score=51.37 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhcccc
Q 018307 274 FVLFLLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRS 353 (358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~~ 353 (358)
.....-+.-|.+-+..|+....+++.++....+++....-.++..++.++-+|++|+.+.++..+.++|+++.+..+.++
T Consensus 157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 44555666788889999999999999999999999999999999999999999999999999999999999998876654
Q ss_pred c
Q 018307 354 K 354 (358)
Q Consensus 354 ~ 354 (358)
+
T Consensus 237 ~ 237 (416)
T KOG2765|consen 237 N 237 (416)
T ss_pred c
Confidence 3
No 95
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.40 E-value=0.15 Score=37.23 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=25.8
Q ss_pred HHHHHhccchhHH-HHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHH
Q 018307 293 NFLVTKHTSALTL-QVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVT 339 (358)
Q Consensus 293 ~~~~~~~~~~~~~-s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~li 339 (358)
...++++.+...+ .+..-+..+...+.|.++|||++|+.+++|+.++
T Consensus 46 l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 46 LSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 4446777666554 6666788899999999999999999999999875
No 96
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.38 E-value=1.1 Score=35.68 Aligned_cols=126 Identities=11% Similarity=0.050 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHhhhhcccc
Q 018307 66 LSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVVCGNTSLR 145 (358)
Q Consensus 66 ~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 145 (358)
.......-.|-.+-+. .+.|..-.+.-+.++.+++..+..+....+......+..|+. ...+++.............
T Consensus 15 ~~l~~Q~~iN~qL~~~--~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~-~~GG~lGa~~vt~s~~l~p 91 (150)
T COG3238 15 ALLPLQAAINGRLARY--LGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWA-WIGGLLGAIFVTSSILLAP 91 (150)
T ss_pred hhhhhHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHH-HHccchhhhhhhhhHHhcc
Confidence 3333334445555444 445999999999999888887777533222222223334443 4445655555555555666
Q ss_pred ccchhHHHHH-hhhHHHHHHHHHHHH-h---ccccchHHHHHHHHHHHhhhhhc
Q 018307 146 YLPVSFNQAI-GATTPFFTAIFAFLI-T---CKKESAEVYCALMPVVFGIVLAS 194 (358)
Q Consensus 146 ~~~~~~~~~l-~~~~p~~~~~~~~~~-~---~e~~~~~~~~~~~~~~~Gv~l~~ 194 (358)
.+.++..+.+ .+-+.+..+++..+= + +++++..+++++++.++|+.+..
T Consensus 92 ~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 92 RLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 6666555544 455555555555332 2 46789999999999999955543
No 97
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=95.25 E-value=0.039 Score=48.14 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHHHH
Q 018307 204 GFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLGNA 283 (358)
Q Consensus 204 G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (358)
|++.+++|+++++-..+=.||. ...|+.-.+.++.....+.........+.+ ..+.+..++|
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-----~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p-------------~f~p~amlgG 62 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-----DTGDGFFFQWVMCSGIFLVGLVVNLILGFP-------------PFYPWAMLGG 62 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-----cCCCcHHHHHHHHHHHHHHHHHHHHhcCCC-------------cceeHHHhhh
Confidence 5678899999999888888876 344677666666655554444444433322 2233344555
Q ss_pred HHHHHHHHHHHHHHhccch-hHHHHhhhhhHHHHHHhhHh-hcCCc-----ccchhhhhHHHHHHHHHHhhhhccc
Q 018307 284 TVAYLVNLTNFLVTKHTSA-LTLQVLGNAKAAVAAVVSVL-IFRNP-----VTVMGMTGFAVTIMGVVLYSEAKKR 352 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~l~~~~~~~~~~~-~~ge~-----~~~~~~~G~~lii~g~~~~~~~~~~ 352 (358)
.+-...|....-.++..+- ....+-+..+-+.+...|-+ +||++ -.+..++|++++++|..+|..-|.+
T Consensus 63 ~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 63 ALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred hhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 5555555555555555552 33344555566667776654 66653 3567999999999999999865543
No 98
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.89 E-value=0.058 Score=45.64 Aligned_cols=132 Identities=9% Similarity=0.058 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCC---------HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHHHHH
Q 018307 211 STAGRALKSVVQGILLTSEAEKLH---------SMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFLLLG 281 (358)
Q Consensus 211 a~~~~a~~~v~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (358)
--+||=.|.+.++|+.+.+ ++.+ ...+.+.+.....++.=+...+.+. ...++...+.+..+
T Consensus 21 ifvCYF~yGI~QEkitrGk-Yg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~--------~~~D~t~~~~YaAc 91 (337)
T KOG1580|consen 21 IFVCYFVYGIQQEKITRGK-YGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKK--------TEIDNTPTKMYAAC 91 (337)
T ss_pred hhheehhhhhHHHHhhccc-cCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccc--------ccccCCcchHHHHH
Confidence 3468889999999997422 2211 2233444444443332222122111 11112233333332
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccc
Q 018307 282 NATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKR 352 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~ 352 (358)
+ +...+...+.+.+++..+--+.-+..+.+|+-.+++|+++.+.+.++..+.-...+++|+.++.+.++|
T Consensus 92 s-~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 92 S-ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred H-HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 2 222223345677888888778888889999999999999999999999999999999999999887555
No 99
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.91 E-value=0.45 Score=42.41 Aligned_cols=138 Identities=11% Similarity=-0.026 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhccc-----ccccccHHHHHHHHHHHH
Q 018307 57 TALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVP-----IQHILSRKQFLKIFALSA 131 (358)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 131 (358)
...++...........+..|...+.-+++ -+-+.++..+.+...+.....+.+..+ .+.......+-.+...++
T Consensus 158 gY~w~~~n~~~~a~~~v~~kk~vd~~~l~-~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv 236 (314)
T KOG1444|consen 158 GYSWALANCLTTAAFVVYVKKSVDSANLN-KFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV 236 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccc-ceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence 34555555556666666677777654555 566777777777777766665554422 111122223444455555
Q ss_pred HHHHHHhhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhcc
Q 018307 132 IFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASN 195 (358)
Q Consensus 132 ~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~ 195 (358)
+...-.++..++.+..++.+.++...-.-..+.+...++.+++.++...+|+.++++|-++...
T Consensus 237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 5566688889999999999999999777777777777788889999999999999998887763
No 100
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=93.43 E-value=2.8 Score=35.57 Aligned_cols=108 Identities=8% Similarity=-0.019 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccc---ccccHHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHH
Q 018307 87 PIFLTMLHMISCAVYSYVAIHFLELVPIQ---HILSRKQFLKIFALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFT 163 (358)
Q Consensus 87 p~~l~~~r~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~ 163 (358)
-.--.++.-+.+..++..+-.+....... .-...+....++..|++...-.++.-++++-++.++++++-++.-...
T Consensus 185 d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~ 264 (309)
T COG5070 185 DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPI 264 (309)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChH
Confidence 45556677777766666665544333221 111233445667777888888899999999999999999999999999
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHhhhhhc
Q 018307 164 AIFAFLITCKKESAEVYCALMPVVFGIVLAS 194 (358)
Q Consensus 164 ~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~ 194 (358)
.+.+.++++|+.++.++.++.++++..++..
T Consensus 265 alaGlvffdap~nf~si~sillGflsg~iYa 295 (309)
T COG5070 265 ALAGLVFFDAPVNFLSIFSILLGFLSGAIYA 295 (309)
T ss_pred HHhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888776655443
No 101
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=92.90 E-value=4.6 Score=36.67 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHH-HHHHHHHHHHHHHH-HHhcchhHHHHHhhhccchHHHHHH
Q 018307 202 LFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLL-YMAPMSALILLPFT-LYIEGNVAATTIEKASEDRFVLFLL 279 (358)
Q Consensus 202 ~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (358)
..|+++-.+++++.+.+.+=.||. ++ =++|... .+.+++-++ +|.. ....-|+..+.... .+...+...
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv-----k~-WsWEs~Wlv~gi~swli-~P~~~a~l~ip~~~~i~~~--~~~~~l~~~ 76 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV-----KG-WSWESYWLVQGIFSWLI-VPWLWALLAIPDFFSIYSA--TPASTLFWT 76 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc-----CC-ccHHHHHHHHHHHHHHH-HHHHHHHHhCCcHHHHHHh--CChhHHHHH
Confidence 579999999999999999888876 22 3455443 333444333 3332 23334444333222 122233333
Q ss_pred HHHHHHHHHHHHHHHHHHhccchh-HHHHhhhhhHHHHHHhhHhhcC-------CcccchhhhhHHHHHHHHHHhhhhcc
Q 018307 280 LGNATVAYLVNLTNFLVTKHTSAL-TLQVLGNAKAAVAAVVSVLIFR-------NPVTVMGMTGFAVTIMGVVLYSEAKK 351 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~g-------e~~~~~~~~G~~lii~g~~~~~~~~~ 351 (358)
.+.+++--+..+..-..+++.+-. ..++.--+..++..++--++.| ++-....++|.+++++|+.+..+...
T Consensus 77 ~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~ 156 (344)
T PF06379_consen 77 FLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS 156 (344)
T ss_pred HHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence 333443222222222344554422 2222222333334444333332 33345689999999999999887643
No 102
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=92.64 E-value=0.079 Score=43.60 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhcc
Q 018307 288 LVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKK 351 (358)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~ 351 (358)
..|+.+..++++.+|+.++.....+..+..+++++++||++...+++..++.+.|+.+..+.++
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 3456666789999999999999999999999999999999999999999999999888776543
No 103
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=91.60 E-value=0.41 Score=36.16 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=40.7
Q ss_pred HHHHhccchhHHHHh-hhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHH
Q 018307 294 FLVTKHTSALTLQVL-GNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVL 345 (358)
Q Consensus 294 ~~~~~~~~~~~~s~~-~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~ 345 (358)
+..+++.+-+.+..+ +.+.-+++.+.++++..|..+...++|+++++.|+.+
T Consensus 59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 445666665555554 6888899999998887778888999999999999754
No 104
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.98 E-value=0.31 Score=43.45 Aligned_cols=126 Identities=12% Similarity=0.191 Sum_probs=83.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhccchHHHHH
Q 018307 199 LFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFTLYIEGNVAATTIEKASEDRFVLFL 278 (358)
Q Consensus 199 ~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (358)
.++..|..+++.+++..+...++.|+...+... ... -..+++. ... ..+.|+.
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----~~~----------------ra~~gg~--~yl-----~~~~Ww~ 69 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----SGL----------------RAGEGGY--GYL-----KEPLWWA 69 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhh----hcc----------------cccCCCc--chh-----hhHHHHH
Confidence 445679999999999999888888876521110 000 0001100 000 1123444
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhccccc
Q 018307 279 LLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAKKRSK 354 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~~~~~ 354 (358)
-+..-..|=..|++ +....+++-++..+.+..+.+.+++.++++|+++....+|.++.++|..+......+++
T Consensus 70 G~ltm~vGei~NFa---AYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~ 142 (335)
T KOG2922|consen 70 GMLTMIVGEIANFA---AYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ 142 (335)
T ss_pred HHHHHHHHhHhhHH---HHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc
Confidence 33334444444433 45778888889999999999999999999999999999999999999887765544443
No 105
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=85.04 E-value=25 Score=30.90 Aligned_cols=101 Identities=10% Similarity=0.057 Sum_probs=69.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHHHH
Q 018307 86 YPIFLTMLHMISCAVYSYVAIHFLELVPIQHILSRKQFLKIFALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFTAI 165 (358)
Q Consensus 86 ~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~ 165 (358)
++++.-++......+..++.....+ .+ .......+.|.+.+.++.+..-.++.+..+...++-++.-+.+--
T Consensus 26 Dg~~fQw~~~~~i~~~g~~v~~~~~-~p-------~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw 97 (254)
T PF07857_consen 26 DGFFFQWVMCSGIFLVGLVVNLILG-FP-------PFYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGW 97 (254)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcC-CC-------cceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3777777777666666555554221 11 122334566788899999999999999999999999886665544
Q ss_pred HH-HH-Hhc---c--ccchHHHHHHHHHHHhhhhhc
Q 018307 166 FA-FL-ITC---K--KESAEVYCALMPVVFGIVLAS 194 (358)
Q Consensus 166 ~~-~~-~~~---e--~~~~~~~~~~~~~~~Gv~l~~ 194 (358)
.. .+ +++ | +-++..++|++++++|..+..
T Consensus 98 ~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~ 133 (254)
T PF07857_consen 98 ASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFS 133 (254)
T ss_pred HHhhceeccccccccchhHHHHHHHHHHHHHHHhee
Confidence 33 22 333 2 236788999999999988775
No 106
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=84.63 E-value=16 Score=32.18 Aligned_cols=139 Identities=8% Similarity=-0.083 Sum_probs=82.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHH-------HhhcccccccccHHHHH
Q 018307 52 SPHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIH-------FLELVPIQHILSRKQFL 124 (358)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~ 124 (358)
..+...+.+..+-...+.-+.++++..+++||=+ +=...++..+......+.... .....+.-..+.. .
T Consensus 160 ~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh-~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~---g 235 (330)
T KOG1583|consen 160 FWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH-WKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLL---G 235 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceecccc---C
Confidence 3566777777777777888899999999987755 666666666654333222210 0000110000111 1
Q ss_pred HHHHHHHHHHHH-Hhhhhccccc-------cchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhc
Q 018307 125 KIFALSAIFSFS-VVCGNTSLRY-------LPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLAS 194 (358)
Q Consensus 125 ~~~~~~~~~~~~-~~~~~~al~~-------~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~ 194 (358)
..+|....+.+. ...++.|.+. +++=+.++....-=.+..+++.+.++..+++..|+|..+.++|..+..
T Consensus 236 ~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 236 FKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 114444444333 3344445443 222233344455566778889989999999999999999999998876
No 107
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=84.05 E-value=9.8 Score=28.21 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=38.9
Q ss_pred HHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhh
Q 018307 304 TLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEA 349 (358)
Q Consensus 304 ~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~ 349 (358)
.++..+-+=.+.+.++++.+-|++++...++|..+++.|..+....
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 3455666678889999999999999999999999999998876554
No 108
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.51 E-value=4.8 Score=35.36 Aligned_cols=124 Identities=9% Similarity=-0.028 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc----cccccHHHHHHHHHHHHHHHHHHhhhhcccc
Q 018307 70 GVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVAIHFLELVPI----QHILSRKQFLKIFALSAIFSFSVVCGNTSLR 145 (358)
Q Consensus 70 ~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 145 (358)
..++..|..+... -+.-+.++++.-+.+.++.++...+.+..+. +..+....|..+...|++.....+-+.+=++
T Consensus 199 lnaiytkk~l~~v-~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK 277 (347)
T KOG1442|consen 199 LNAIYTKKVLPPV-GDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIK 277 (347)
T ss_pred HHHHhhheecccc-cCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEE
Confidence 3445556444321 2346789999999998888777765544322 2333344444445555655555555555566
Q ss_pred ccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhc
Q 018307 146 YLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLAS 194 (358)
Q Consensus 146 ~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~ 194 (358)
.+++=+..+--.....--.+++..+++|..+...|-+.++++.|.....
T Consensus 278 ~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT 326 (347)
T KOG1442|consen 278 VTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYT 326 (347)
T ss_pred ecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHH
Confidence 6666666666666666677888899999999999999888887766554
No 109
>PRK02237 hypothetical protein; Provisional
Probab=77.84 E-value=26 Score=26.07 Aligned_cols=46 Identities=13% Similarity=0.074 Sum_probs=38.5
Q ss_pred HHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhh
Q 018307 304 TLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEA 349 (358)
Q Consensus 304 ~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~ 349 (358)
.++..+-+=.+.+.++++.+-|++++..-++|.++++.|..+....
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 4455566677888999999999999999999999999998776543
No 110
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=77.67 E-value=5.6 Score=35.04 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=49.1
Q ss_pred HHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhh
Q 018307 291 LTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSE 348 (358)
Q Consensus 291 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~ 348 (358)
...+..+-.++++.+.+..-...+++-+++..+++.+++..+|+|+..+..|+...-.
T Consensus 101 slm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 101 SLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 3344556778888888888888999999999999999999999999999999876543
No 111
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=74.34 E-value=25 Score=30.96 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc----ccccHHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhhhHHHHH
Q 018307 88 IFLTMLHMISCAVYSYVAIHFLELVPIQ----HILSRKQFLKIFALSAIFSFSVVCGNTSLRYLPVSFNQAIGATTPFFT 163 (358)
Q Consensus 88 ~~l~~~r~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~ 163 (358)
..++++-..++++.++....+.+..-.. .....+.....+..++...++...-..-++.-.+.++..+...---.|
T Consensus 221 ~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavT 300 (367)
T KOG1582|consen 221 SEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVT 300 (367)
T ss_pred ceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHH
Confidence 4455555555555555444433322110 001222334444445444444333333334455666777777777889
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHhhhhhcccccc
Q 018307 164 AIFAFLITCKKESAEVYCALMPVVFGIVLASNSEPL 199 (358)
Q Consensus 164 ~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~ 199 (358)
.+++++++-++++....-+..+++.|+.+=..++.+
T Consensus 301 i~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 301 ILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN 336 (367)
T ss_pred HHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence 999999999999999999999999999988766633
No 112
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=73.48 E-value=3.4 Score=30.50 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=26.3
Q ss_pred HHHHhhHhhcCCcccchhhhhHHHHHHHHHH
Q 018307 315 VAAVVSVLIFRNPVTVMGMTGFAVTIMGVVL 345 (358)
Q Consensus 315 ~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~ 345 (358)
.-..++++++||++++.+..|.++++++++.
T Consensus 75 vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 75 VFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred eeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 3456788999999999999999999888654
No 113
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=72.40 E-value=4.1 Score=30.00 Aligned_cols=63 Identities=22% Similarity=0.208 Sum_probs=47.4
Q ss_pred HHHHHHHhhhhccccccchhHHH-HHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhh
Q 018307 131 AIFSFSVVCGNTSLRYLPVSFNQ-AIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLA 193 (358)
Q Consensus 131 ~~~~~~~~~~~~al~~~~~~~~~-~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~ 193 (358)
.++-.+..+++.-++..|.+.+. +.++++-.|+.+.+..+..|....+.++|..+.++|+.+.
T Consensus 60 llNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 60 LLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 34455666677777777766655 4557788899999986666677888899999999998764
No 114
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=67.34 E-value=49 Score=24.56 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=34.8
Q ss_pred hhccccccchhHHHHHhh-hHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh
Q 018307 140 GNTSLRYLPVSFNQAIGA-TTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVL 192 (358)
Q Consensus 140 ~~~al~~~~~~~~~~l~~-~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l 192 (358)
+=+|.+..+.+.--+++= .+...-..++.+++||++++....|.++++.++..
T Consensus 52 NRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 52 NRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred hhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 333444445554444442 33333445778899999999999999999877654
No 115
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.75 E-value=14 Score=26.84 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=29.2
Q ss_pred hHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHh
Q 018307 312 KAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLY 346 (358)
Q Consensus 312 ~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~ 346 (358)
...+-+.+++++++|++.+.++.|..++.+|++..
T Consensus 79 tL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 79 TLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 34445678999999999999999999999887754
No 116
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=63.33 E-value=13 Score=27.65 Aligned_cols=39 Identities=5% Similarity=0.094 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccc
Q 018307 158 TTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNS 196 (358)
Q Consensus 158 ~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 196 (358)
...+...+-.+.+-|+||++..++|..++++|+.++...
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 445555667788889999999999999999999987643
No 117
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=62.20 E-value=2.5 Score=36.95 Aligned_cols=109 Identities=8% Similarity=0.010 Sum_probs=0.0
Q ss_pred cccchhHHHHHhhhHHHHHHHHH-HHHhccc-cchHHHHHHHHHHHhhhhhcccc--ccchHHHHHHHHHHHHHHHHHHH
Q 018307 145 RYLPVSFNQAIGATTPFFTAIFA-FLITCKK-ESAEVYCALMPVVFGIVLASNSE--PLFHLFGFLVCVGSTAGRALKSV 220 (358)
Q Consensus 145 ~~~~~~~~~~l~~~~p~~~~~~~-~~~~~e~-~~~~~~~~~~~~~~Gv~l~~~~~--~~~~~~G~~~~l~a~~~~a~~~v 220 (358)
+-.+-+..+++.+...+.+.++- ..++|+| +-..-.++++++++-..++..-. .+.-+.|+++.++..+..-.-+.
T Consensus 45 sd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~ 124 (381)
T PF05297_consen 45 SDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWF 124 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555667766665555544 3444554 44555666666555444443222 23334566555444332222222
Q ss_pred HHHHhhcccCCCCCHHHHHHHHHHH-HHHHHHHHHHH
Q 018307 221 VQGILLTSEAEKLHSMNLLLYMAPM-SALILLPFTLY 256 (358)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 256 (358)
+.. ++ ++.+.+-|+++.+...+ -.+++++++..
T Consensus 125 Ym~-lL--r~~GAs~WtiLaFcLAF~LaivlLIIAv~ 158 (381)
T PF05297_consen 125 YMW-LL--RELGASFWTILAFCLAFLLAIVLLIIAVL 158 (381)
T ss_dssp -------------------------------------
T ss_pred HHH-HH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22 44666777776553332 23333444443
No 118
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=60.70 E-value=2.2 Score=36.98 Aligned_cols=66 Identities=21% Similarity=0.223 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhh
Q 018307 283 ATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSE 348 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~ 348 (358)
++.-.-.|+....+.++++-+.......-..+...+++|++++.+-.+.++.|.+++++|+.....
T Consensus 85 a~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~ 150 (336)
T KOG2766|consen 85 AFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVF 150 (336)
T ss_pred eEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEE
Confidence 333334455555667888888889999999999999999999999999999999999999876543
No 119
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=49.42 E-value=1.8e+02 Score=25.76 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-----chhHH---HHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018307 235 SMNLLLYMAPMSALILLPFTLYIE-----GNVAA---TTIEKASEDRFVLFLLLGNATVAYLVNLTNFLVTK 298 (358)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (358)
-+...+..|++|+++...+..... ..... ........+....-.+.-+..|..+.+...+...+
T Consensus 110 ~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lVclAvwm~~~ 181 (265)
T COG2116 110 NWLVVYLGNLIGALFVALLFHLSGFNLTANGQWGLFVLGVAEHKLHHTFLEAFAKGILCNWLVCLAVWMSYS 181 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccchhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556677777766554432211 00110 00112233334445555556666666666555444
No 120
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=49.13 E-value=2.2e+02 Score=26.24 Aligned_cols=228 Identities=13% Similarity=0.086 Sum_probs=124.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHh-hhHHHHHHHHHHHHhcc-------ccchHHHHHHHHHHHhh
Q 018307 119 SRKQFLKIFALSAIFSFSVVCGNTSLRYLPVSFNQAIG-ATTPFFTAIFAFLITCK-------KESAEVYCALMPVVFGI 190 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~p~~~~~~~~~~~~e-------~~~~~~~~~~~~~~~Gv 190 (358)
+.+........+++...+...+-.+.+|+..+..+-+. .+..++-.++-.++.++ +-....++|+++.++|+
T Consensus 69 ~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGI 148 (344)
T PF06379_consen 69 PASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGI 148 (344)
T ss_pred ChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHH
Confidence 34566666778888888888888899998877665433 45555555554444332 23457889999999999
Q ss_pred hhhccc----c-------ccch-HHHHHHHHHHHHHHHHHHHHHHHhhcc----cCCCCCHHHHH----HHHHHHHHHHH
Q 018307 191 VLASNS----E-------PLFH-LFGFLVCVGSTAGRALKSVVQGILLTS----EAEKLHSMNLL----LYMAPMSALIL 250 (358)
Q Consensus 191 ~l~~~~----~-------~~~~-~~G~~~~l~a~~~~a~~~v~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~l 250 (358)
++.... | .+++ ..|++.++++.+..|+.+.-.+.-..- .+.+.+++... .....-+++.-
T Consensus 149 ai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN 228 (344)
T PF06379_consen 149 AICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITN 228 (344)
T ss_pred HHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHH
Confidence 988621 1 1222 369999999999988877765532100 01222332211 11111223333
Q ss_pred HHHHHHhcc-hh-H---HHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHhhhhhHHHHHHhhH
Q 018307 251 LPFTLYIEG-NV-A---ATTIEKASEDRFVLFLLLGNATVAYLVNLTNFLVTKHT----SALTLQVLGNAKAAVAAVVSV 321 (358)
Q Consensus 251 ~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~~l~~~~~~~~~~ 321 (358)
+...++... .. . .+..........-.....+.+++-+...+.+-+.-.+. +.....+.+.+..+++-++|.
T Consensus 229 ~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl 308 (344)
T PF06379_consen 229 LIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGL 308 (344)
T ss_pred HHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHH
Confidence 333333210 00 0 00000000111223444445555444433333333333 356677777778888888887
Q ss_pred hhcCCc------ccchhhhhHHHHHHHHHHhh
Q 018307 322 LIFRNP------VTVMGMTGFAVTIMGVVLYS 347 (358)
Q Consensus 322 ~~~ge~------~~~~~~~G~~lii~g~~~~~ 347 (358)
+ ++|- .-..-++|.++++.++.+.-
T Consensus 309 ~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG 339 (344)
T PF06379_consen 309 I-LKEWKGASKKTIRVLVLGIAVLILSVVIVG 339 (344)
T ss_pred H-HHHhccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5 5662 22345788888888876654
No 121
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=48.98 E-value=2.5e+02 Score=26.98 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=17.0
Q ss_pred hhhhhHHHHHHHHHHhhhhccc
Q 018307 331 MGMTGFAVTIMGVVLYSEAKKR 352 (358)
Q Consensus 331 ~~~~G~~lii~g~~~~~~~~~~ 352 (358)
...+|.++.+.|+.+|...+++
T Consensus 412 ~~~~~~~~~~~g~~~y~~~~~~ 433 (468)
T TIGR03810 412 YLLLSAILYAPGIYFYARARKE 433 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888889999999765444
No 122
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=45.20 E-value=20 Score=25.49 Aligned_cols=27 Identities=19% Similarity=0.141 Sum_probs=21.9
Q ss_pred cccchhhhhHHHHHHHHHHhhhhcccc
Q 018307 327 PVTVMGMTGFAVTIMGVVLYSEAKKRS 353 (358)
Q Consensus 327 ~~~~~~~~G~~lii~g~~~~~~~~~~~ 353 (358)
.+++..++|.++++.|..+|..++.|.
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~P 30 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRP 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 467889999999999999998665443
No 123
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=42.21 E-value=1.4e+02 Score=22.13 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=36.2
Q ss_pred HHhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHHhhhhc
Q 018307 306 QVLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVLYSEAK 350 (358)
Q Consensus 306 s~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~~~~~~ 350 (358)
+-.+-+-.+.+..+.+++-|..++..-++|.++.+.|..+.....
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 344555677888899999999999999999999999977665543
No 124
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=41.82 E-value=3.5e+02 Score=26.62 Aligned_cols=25 Identities=8% Similarity=-0.057 Sum_probs=13.8
Q ss_pred ccchhHHHHhhhhhHHHHHHhhHhh
Q 018307 299 HTSALTLQVLGNAKAAVAAVVSVLI 323 (358)
Q Consensus 299 ~~~~~~~s~~~~l~~~~~~~~~~~~ 323 (358)
|..+....+.....|+-+.+.|.+.
T Consensus 343 Rv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 343 RVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555666666666654
No 125
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=34.23 E-value=2e+02 Score=21.42 Aligned_cols=38 Identities=3% Similarity=-0.010 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccc
Q 018307 159 TPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNS 196 (358)
Q Consensus 159 ~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 196 (358)
......+-.+++-|+++++..|+|..+.++|+.++..+
T Consensus 68 yI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 68 YIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 34445556677889999999999999999998877654
No 126
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=33.24 E-value=4.3e+02 Score=25.09 Aligned_cols=29 Identities=14% Similarity=-0.004 Sum_probs=14.7
Q ss_pred chhhhhHHHHHHHHHHhhhhcccccccCC
Q 018307 330 VMGMTGFAVTIMGVVLYSEAKKRSKVTTH 358 (358)
Q Consensus 330 ~~~~~G~~lii~g~~~~~~~~~~~~~~~~ 358 (358)
....++..+.+.+...+.+.+++.+|.+|
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T PRK10435 405 SSFELAGTFIVSLIILMFYARKMHERQSH 433 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchhcc
Confidence 33455555555555555555555444443
No 127
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=32.55 E-value=44 Score=18.69 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=8.2
Q ss_pred ccchhhhhHHHHHHH
Q 018307 328 VTVMGMTGFAVTIMG 342 (358)
Q Consensus 328 ~~~~~~~G~~lii~g 342 (358)
-+...++|++++..+
T Consensus 10 ~~~~~~~G~~l~~~~ 24 (34)
T TIGR01167 10 NSLLLLLGLLLLGLG 24 (34)
T ss_pred cHHHHHHHHHHHHHH
Confidence 445566777444443
No 128
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=32.17 E-value=6e+02 Score=26.47 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=30.3
Q ss_pred hHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhh
Q 018307 150 SFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLA 193 (358)
Q Consensus 150 ~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~ 193 (358)
+-+.++..+.|.-.+.++.+...+|.....+.+.+-.++|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 34566788899888888887777775455566666666676644
No 129
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=32.05 E-value=2.8e+02 Score=22.51 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=40.0
Q ss_pred HHHHhccccchHHHHHHHH-------HHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 018307 167 AFLITCKKESAEVYCALMP-------VVFGIVLASNSEPLFHLFGFLVCVGSTAGRALKSVVQGIL 225 (358)
Q Consensus 167 ~~~~~~e~~~~~~~~~~~~-------~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~ 225 (358)
+.++.|..|+..+.+|+.+ .+.|+.+....+.+.-......++.+++.+++-.++..-+
T Consensus 89 Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~i 154 (193)
T COG4657 89 EMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAI 154 (193)
T ss_pred HHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 3445555566666666554 4568887777766665667888888888888877776555
No 130
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=32.00 E-value=3e+02 Score=22.90 Aligned_cols=14 Identities=14% Similarity=-0.095 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 018307 64 WYLSNIGVLLLNKY 77 (358)
Q Consensus 64 ~~~~~~~~~~~~K~ 77 (358)
....+...++++|-
T Consensus 108 ~aLlsgitaff~~n 121 (226)
T COG4858 108 MALLSGITAFFQKN 121 (226)
T ss_pred HHHHHHHHHHHhcC
Confidence 33445555666665
No 131
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=31.83 E-value=4.7e+02 Score=25.14 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=17.3
Q ss_pred hhhhhHHHHHHHHHHhhhhccccc
Q 018307 331 MGMTGFAVTIMGVVLYSEAKKRSK 354 (358)
Q Consensus 331 ~~~~G~~lii~g~~~~~~~~~~~~ 354 (358)
....|.++.+.|..+|.+.+++++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~~~~ 440 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARKERG 440 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456788888999888876554443
No 132
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=31.52 E-value=4e+02 Score=24.23 Aligned_cols=56 Identities=18% Similarity=0.093 Sum_probs=43.4
Q ss_pred hhhhccccccchhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhh
Q 018307 138 VCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLA 193 (358)
Q Consensus 138 ~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~ 193 (358)
.+.+.-+..++.=+.++..-..-+-+.+++.++.+++++...|+|..+...|+.+-
T Consensus 258 ~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 258 FSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 33344455566555556666667778888999999999999999999999999887
No 133
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.07 E-value=2.1e+02 Score=20.92 Aligned_cols=30 Identities=7% Similarity=0.014 Sum_probs=25.6
Q ss_pred HHHHHHhccccchHHHHHHHHHHHhhhhhc
Q 018307 165 IFAFLITCKKESAEVYCALMPVVFGIVLAS 194 (358)
Q Consensus 165 ~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~ 194 (358)
.++.+.+||++++..+.+..++..|+..+.
T Consensus 85 ~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 85 PFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 578889999999999999999988887653
No 134
>PRK02237 hypothetical protein; Provisional
Probab=30.73 E-value=2.3e+02 Score=21.21 Aligned_cols=39 Identities=3% Similarity=0.032 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhhccc
Q 018307 158 TTPFFTAIFAFLITCKKESAEVYCALMPVVFGIVLASNS 196 (358)
Q Consensus 158 ~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~l~~~~ 196 (358)
...+...+..+.+-|+|+++..++|..++++|+.++...
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 344455566788889999999999999999999887643
No 135
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=29.95 E-value=1.8e+02 Score=22.40 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=36.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHH
Q 018307 52 SPHIFTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYV 104 (358)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~ 104 (358)
++.+..++++++..++++...++-|.+...+. +||++++-+....-..+...
T Consensus 53 ke~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~-NY~fFL~QlTt~gyvpIffa 104 (130)
T PF08627_consen 53 KENFKLLVYVVVYVVSGVINRVLYKKMTNPMK-NYPFFLNQLTTFGYVPIFFA 104 (130)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHhcccceehHHHH
Confidence 35677888888888899998888888888742 46888877755444333333
No 136
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=29.59 E-value=45 Score=29.99 Aligned_cols=134 Identities=8% Similarity=0.056 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHH-HHhc--c---h-hHHHHHhhhccchHHHHHHHH
Q 018307 209 VGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSALILLPFT-LYIE--G---N-VAATTIEKASEDRFVLFLLLG 281 (358)
Q Consensus 209 l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~--~---~-~~~~~~~~~~~~~~~~~~~~~ 281 (358)
+++.+||+-+-..+|-.-+ +.+ ..+..+|-..++.++...+. +..+ + + ...-..+....++..+...+.
T Consensus 2 ~itmlcwGSW~nt~kL~~r--~gR--~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~a 77 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAER--RGR--LPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMA 77 (336)
T ss_pred eeehhhhcChHHHHHHHHh--cCC--ccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHH
Confidence 3456777766666655531 111 12234444444444433222 2211 1 1 111122233445555666677
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHhh-hhhHHHHHHhhHhhcCCccc--chhhhhHHHHHHHHHHhh
Q 018307 282 NATVAYLVNLTNFLVTKHTSALTLQVLG-NAKAAVAAVVSVLIFRNPVT--VMGMTGFAVTIMGVVLYS 347 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~l~~~~~~~~~~~~~ge~~~--~~~~~G~~lii~g~~~~~ 347 (358)
+|++.-+.|++..+.+...+-...-+++ .+..++.+.+.++ ..++.+ ..-..|..++++++++-.
T Consensus 78 GGvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 78 GGVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred hhHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHH
Confidence 7777667777766666555433222211 1222333333332 234443 356668888877776644
No 137
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=28.07 E-value=2.4e+02 Score=20.49 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=34.2
Q ss_pred HHHHhccchhHHHHhhhhhHHHHHHhhHhh---cCCc-ccchhhhhHHHHHHHHHHhhhhcccccc
Q 018307 294 FLVTKHTSALTLQVLGNAKAAVAAVVSVLI---FRNP-VTVMGMTGFAVTIMGVVLYSEAKKRSKV 355 (358)
Q Consensus 294 ~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~---~ge~-~~~~~~~G~~lii~g~~~~~~~~~~~~~ 355 (358)
..+++++.-...-..-.+.-+..+++|.+. .++. +-...|.|.+.-+.+..++....+|.+|
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~ 87 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKK 87 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhh
Confidence 345666654444444444455555555442 2322 3334578888778888887655555443
No 138
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=26.60 E-value=50 Score=19.78 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHhhhhcc
Q 018307 334 TGFAVTIMGVVLYSEAKK 351 (358)
Q Consensus 334 ~G~~lii~g~~~~~~~~~ 351 (358)
+|.++++++.+++.+.++
T Consensus 21 V~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred hHHHHHHHHHHhheEEec
Confidence 466666777777755443
No 139
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.99 E-value=1.8e+02 Score=26.80 Aligned_cols=78 Identities=13% Similarity=0.039 Sum_probs=40.7
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH---HHHhhcccccccccHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 018307 72 LLLNKYLLSFYGYRYPIFLTMLHMISCAVYSYVA---IHFLELVPIQHILSRKQFLKIFALSAIFSFSVVCGNTSLRYLP 148 (358)
Q Consensus 72 ~~~~K~~~~~~~~~~p~~l~~~r~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 148 (358)
.++-|.+.++++ -++......+.+.++...+ ..+.|..|....+++...- =.+..++..+.+.+.++..
T Consensus 205 lY~i~ql~~nLq---~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~RS~~ilm-----WtLqli~lvl~Yfsvq~p~ 276 (452)
T KOG3817|consen 205 LYVIKQLADNLQ---LIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDPRSQTILM-----WTLQLIGLVLAYFSVQHPS 276 (452)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHH-----HHHHHHHHHHHHHhcccHH
Confidence 444566666532 4444555555554332222 2234554433333333222 2355677778888888888
Q ss_pred hhHHHHHhh
Q 018307 149 VSFNQAIGA 157 (358)
Q Consensus 149 ~~~~~~l~~ 157 (358)
++.+.++..
T Consensus 277 ~a~A~iI~~ 285 (452)
T KOG3817|consen 277 AAIAAIIMV 285 (452)
T ss_pred HHHHHHHHH
Confidence 887655544
No 140
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=25.92 E-value=6e+02 Score=24.39 Aligned_cols=57 Identities=21% Similarity=0.155 Sum_probs=36.8
Q ss_pred HHhccccchHHHHHHHHHH--HhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018307 169 LITCKKESAEVYCALMPVV--FGIVLASNSEPLFHLFGFLVCVGSTAGRALKSVVQGILLT 227 (358)
Q Consensus 169 ~~~~e~~~~~~~~~~~~~~--~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~ 227 (358)
++.|.|..+.|++-+++.. +=+.++..+| .-.++....+.|+.|-++-..+.+.+++
T Consensus 317 ~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSE--hi~F~~AYliAa~a~i~Li~~Y~~~vl~ 375 (430)
T PF06123_consen 317 LLSKLRIHPIQYLLVGLALVLFYLLLLSLSE--HIGFNLAYLIAALACIGLISLYLSSVLK 375 (430)
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHHHh--hhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557788887776554444 3333444443 2235677777888888888888888873
No 141
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=25.49 E-value=1.6e+02 Score=23.28 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=18.1
Q ss_pred HhccchhHHHHhhhhhHHHHHHhhHhhc
Q 018307 297 TKHTSALTLQVLGNAKAAVAAVVSVLIF 324 (358)
Q Consensus 297 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~ 324 (358)
+..-+....+...|+-|++.++++.+++
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777777777776666553
No 142
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.05 E-value=53 Score=25.21 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHhhhhccccc
Q 018307 335 GFAVTIMGVVLYSEAKKRSK 354 (358)
Q Consensus 335 G~~lii~g~~~~~~~~~~~~ 354 (358)
|++.+++ ++.|..+++|+|
T Consensus 76 GvIg~Il-li~y~irR~~Kk 94 (122)
T PF01102_consen 76 GVIGIIL-LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHH-HHHHHHHHHS--
T ss_pred HHHHHHH-HHHHHHHHHhcc
Confidence 4444333 344555444444
No 143
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=23.98 E-value=1.6e+02 Score=23.40 Aligned_cols=22 Identities=5% Similarity=0.072 Sum_probs=14.9
Q ss_pred hhHHHHHhhhHHHHHHHHHHHH
Q 018307 149 VSFNQAIGATTPFFTAIFAFLI 170 (358)
Q Consensus 149 ~~~~~~l~~~~p~~~~~~~~~~ 170 (358)
.=.++++.+..|+++++++.++
T Consensus 74 lL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 74 LLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567778888888777644
No 144
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=23.70 E-value=1.2e+02 Score=22.48 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=33.6
Q ss_pred HHHHhccchhHHH-HhhhhhHHHHHHhhHhhcCCcccchhhhhHHHHHHHHHH
Q 018307 294 FLVTKHTSALTLQ-VLGNAKAAVAAVVSVLIFRNPVTVMGMTGFAVTIMGVVL 345 (358)
Q Consensus 294 ~~~~~~~~~~~~s-~~~~l~~~~~~~~~~~~~ge~~~~~~~~G~~lii~g~~~ 345 (358)
++.+++.+-+.+. +.+.+.-.++...|..+--|......++|..+++.|+.+
T Consensus 70 ~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 70 YLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 3445555544333 344556677777777644444666789999999999865
No 145
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=23.70 E-value=73 Score=19.92 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHhhhhccccc
Q 018307 335 GFAVTIMGVVLYSEAKKRSK 354 (358)
Q Consensus 335 G~~lii~g~~~~~~~~~~~~ 354 (358)
-+.++++|+++|.+.+++++
T Consensus 18 ~~~~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 18 YLALFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHHHHhCCCcch
Confidence 35677899999988766554
No 146
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=23.44 E-value=1.8e+02 Score=25.36 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=43.9
Q ss_pred ccccchHHHHHHHHHHHhhhhhc-----cc-cccchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 018307 172 CKKESAEVYCALMPVVFGIVLAS-----NS-EPLFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPM 245 (358)
Q Consensus 172 ~e~~~~~~~~~~~~~~~Gv~l~~-----~~-~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (358)
+|| +...+..+.++.+|+.++. -+ +...+..|.+++..+.+.+|.-..-.++..+.|+...=|..+.+...+.
T Consensus 92 ~k~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~ 170 (243)
T KOG1623|consen 92 KKK-TVKIVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLV 170 (243)
T ss_pred chh-eeEeeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHH
Confidence 444 4444445555555554443 12 2235678999999999999988888888875444443455554443333
Q ss_pred H
Q 018307 246 S 246 (358)
Q Consensus 246 ~ 246 (358)
+
T Consensus 171 a 171 (243)
T KOG1623|consen 171 A 171 (243)
T ss_pred H
Confidence 3
No 147
>PRK02935 hypothetical protein; Provisional
Probab=22.41 E-value=2.1e+02 Score=21.23 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=15.9
Q ss_pred cchhhhhHHHHHHHHHHhhhhcc
Q 018307 329 TVMGMTGFAVTIMGVVLYSEAKK 351 (358)
Q Consensus 329 ~~~~~~G~~lii~g~~~~~~~~~ 351 (358)
+...++|.+.++.+..+|-+...
T Consensus 41 ~ifm~~G~l~~l~S~vvYFwiGm 63 (110)
T PRK02935 41 TIFMLLGFLAVIASTVVYFWIGM 63 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556788888888888876543
No 148
>PRK11715 inner membrane protein; Provisional
Probab=22.17 E-value=7.1e+02 Score=23.94 Aligned_cols=55 Identities=16% Similarity=0.041 Sum_probs=35.6
Q ss_pred hccccchHHHHHHHHHHH--hhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018307 171 TCKKESAEVYCALMPVVF--GIVLASNSEPLFHLFGFLVCVGSTAGRALKSVVQGILLT 227 (358)
Q Consensus 171 ~~e~~~~~~~~~~~~~~~--Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~ 227 (358)
.|.|..+.|++-+++..+ =..++..+| .-.++..+.+.|+.|-.+-..+....++
T Consensus 325 ~~~~iHpiQYlLVGlAl~lFYLLLLSlSE--HigF~~AYliAa~a~v~li~~Y~~~vl~ 381 (436)
T PRK11715 325 KKLRIHPVQYLLVGLALVLFYLLLLSLSE--HIGFTLAYLIAALACVLLIGFYLSAVLR 381 (436)
T ss_pred cCceecHHHHHHHHHHHHHHHHHHHHHHh--hhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366788877765554443 333334443 2335677778888888888888888873
No 149
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.06 E-value=89 Score=19.40 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHhhhhccccc
Q 018307 335 GFAVTIMGVVLYSEAKKRSK 354 (358)
Q Consensus 335 G~~lii~g~~~~~~~~~~~~ 354 (358)
-..++++|++++.+.+++++
T Consensus 17 ~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHHcccchh
Confidence 34455778888887666543
No 150
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=21.70 E-value=4.7e+02 Score=21.74 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=26.2
Q ss_pred hccccchHHHHHHHHHHHhhhhhccccccc----hHHHHHHHHH
Q 018307 171 TCKKESAEVYCALMPVVFGIVLASNSEPLF----HLFGFLVCVG 210 (358)
Q Consensus 171 ~~e~~~~~~~~~~~~~~~Gv~l~~~~~~~~----~~~G~~~~l~ 210 (358)
++++-......|++..++|+.....+..+. ...|..+.+.
T Consensus 15 l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~~l~~~vG~~lli~ 58 (185)
T COG3247 15 LKKPWWWVLLLGVLLIILGLLALFNPAISTVALVYVVGILLLIS 58 (185)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455566678889999999999887654432 2345544433
No 151
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=21.45 E-value=1.2e+02 Score=23.71 Aligned_cols=28 Identities=18% Similarity=0.000 Sum_probs=24.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018307 199 LFHLFGFLVCVGSTAGRALKSVVQGILL 226 (358)
Q Consensus 199 ~~~~~G~~~~l~a~~~~a~~~v~~~~~~ 226 (358)
+++..|+++.-.-.+.|++|.++++.+-
T Consensus 102 sn~~LgwIL~gVf~lIWslY~~~~~~l~ 129 (138)
T PF07123_consen 102 SNNLLGWILLGVFGLIWSLYFVYTSTLD 129 (138)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhccccC
Confidence 5677899999888999999999999863
No 152
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=20.83 E-value=2.4e+02 Score=18.06 Aligned_cols=44 Identities=27% Similarity=0.158 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018307 178 EVYCALMPVVFGIVLASNSEPLFHLFGFLVCVGSTAGRALKSVVQGILL 226 (358)
Q Consensus 178 ~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~ 226 (358)
...+|..+.++|+++...+.. |.+..+++....+.+..+.|+..
T Consensus 4 v~v~G~~lv~~Gii~~~lPGp-----G~l~i~~GL~iLa~ef~wArr~l 47 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPGP-----GLLVIFLGLAILATEFPWARRLL 47 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCCC-----cHHHHHHHHHHHHHhhHHHHHHH
Confidence 346788888889888776542 56666666667777777777765
No 153
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=20.21 E-value=7.3e+02 Score=23.36 Aligned_cols=77 Identities=10% Similarity=-0.038 Sum_probs=33.5
Q ss_pred HhccccchHHHHHHHHHHHhhhhhccccc-cchHHHHHHHHHHH-HHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHH
Q 018307 170 ITCKKESAEVYCALMPVVFGIVLASNSEP-LFHLFGFLVCVGST-AGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMSA 247 (358)
Q Consensus 170 ~~~e~~~~~~~~~~~~~~~Gv~l~~~~~~-~~~~~G~~~~l~a~-~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (358)
+.++|++......- .+.|.+-++.+.. -..+..++.+++++ +++-....+.+|.. -++..+...+-....+++.
T Consensus 244 ~~~gk~~~~~~~nG--~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~~~--iDD~~~~~~vHg~~Gi~G~ 319 (399)
T PF00909_consen 244 LLSGKWSMVGICNG--ALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKRLK--IDDPVGAFAVHGVGGIWGT 319 (399)
T ss_dssp HHCSS--HHHHHHH--HHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHT--S-HTTGHHHHCHHHHHHHH
T ss_pred ccccccchhhhhhh--hhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccceeE--eccccceEeeeeccHHHHH
Confidence 44455555443322 2334443343333 33445566666664 34444433445442 2334455555555555554
Q ss_pred HHH
Q 018307 248 LIL 250 (358)
Q Consensus 248 ~~l 250 (358)
+..
T Consensus 320 i~~ 322 (399)
T PF00909_consen 320 ILT 322 (399)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
Done!