Your job contains 1 sequence.
>018308
MSTCRAIIRTSFSFVESKFYFLPSKSFLSLSLRSQKPGPISPYSVRTRQYGSVQAAISLE
NGNNLIDDENDTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYLD
RYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRS
ADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTH
VGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGIL
MHHAVCDRATRLVGCNGDLTSEEKQILLAEFSLRHSKSAISIVHEYAKRKETTHMPKL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018308
(358 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2151001 - symbol:AT5G15390 species:3702 "Arabi... 1070 3.0e-108 1
TIGR_CMR|CPS_4975 - symbol:CPS_4975 "tRNA (guanosine-2'-O... 259 2.6e-22 1
UNIPROTKB|P0AGJ2 - symbol:trmH species:83333 "Escherichia... 241 2.1e-20 1
DICTYBASE|DDB_G0271370 - symbol:DDB_G0271370 "tRNA guanos... 155 4.8e-16 2
UNIPROTKB|Q3A9P4 - symbol:CHY_2335 "RNA methyltransferase... 170 1.4e-11 1
TIGR_CMR|CHY_2335 - symbol:CHY_2335 "RNA methyltransferas... 170 1.4e-11 1
TIGR_CMR|CPS_0784 - symbol:CPS_0784 "RNA methyltransferas... 162 1.8e-11 1
UNIPROTKB|Q47VA9 - symbol:rlmB "23S rRNA (guanosine-2'-O-... 165 2.2e-10 1
TIGR_CMR|CPS_4616 - symbol:CPS_4616 "RNA methyltransferas... 165 2.2e-10 1
UNIPROTKB|Q4KJ63 - symbol:rlmB "23S rRNA (guanosine-2'-O-... 164 3.3e-10 1
TIGR_CMR|SO_3934 - symbol:SO_3934 "RNA methyltransferase,... 162 4.6e-10 1
UNIPROTKB|P63177 - symbol:rlmB "23S rRNA 2'-O-ribose G225... 152 8.2e-09 1
DICTYBASE|DDB_G0285499 - symbol:DDB_G0285499 "Probable me... 135 1.0e-08 2
ZFIN|ZDB-GENE-060526-229 - symbol:mrm1 "mitochondrial rRN... 149 4.4e-08 1
UNIPROTKB|Q9F5K6 - symbol:aviRb "23S rRNA (uridine(2479)-... 147 7.0e-08 1
TIGR_CMR|CBU_0986 - symbol:CBU_0986 "RNA methyltransferas... 145 7.1e-08 1
UNIPROTKB|F1S1B8 - symbol:MRM1 "Uncharacterized protein" ... 146 1.7e-07 1
TIGR_CMR|GSU_1462 - symbol:GSU_1462 "RNA methyltransferas... 140 2.6e-07 1
UNIPROTKB|Q9KNY2 - symbol:rlmB "23S rRNA (guanosine-2'-O-... 140 2.7e-07 1
TIGR_CMR|BA_0091 - symbol:BA_0091 "RNA methyltransferase,... 140 2.7e-07 1
TIGR_CMR|VC_2598 - symbol:VC_2598 "RNA methyltransferase,... 140 2.7e-07 1
TIGR_CMR|BA_4805 - symbol:BA_4805 "RNA methyltransferase,... 136 9.1e-07 1
UNIPROTKB|E2RN23 - symbol:MRM1 "Uncharacterized protein" ... 139 9.6e-07 1
UNIPROTKB|Q6IN84 - symbol:MRM1 "rRNA methyltransferase 1,... 138 1.3e-06 1
UNIPROTKB|A7MBD2 - symbol:MRM1 "MRM1 protein" species:991... 137 1.8e-06 1
TIGR_CMR|CJE_0149 - symbol:CJE_0149 "RNA methyltransferas... 131 2.3e-06 1
UNIPROTKB|F1NX84 - symbol:MRM1 "Uncharacterized protein" ... 131 6.5e-06 1
MGI|MGI:2443470 - symbol:Mrm1 "mitochondrial rRNA methylt... 130 8.5e-06 1
ZFIN|ZDB-GENE-090313-347 - symbol:si:dkey-85a20.4 "si:dke... 120 2.1e-05 1
GENEDB_PFALCIPARUM|PF10_0300 - symbol:PF10_0300 "RNA meth... 120 2.2e-05 2
UNIPROTKB|Q8IJ98 - symbol:PF10_0300 "RNA methyltransferas... 120 2.2e-05 2
RGD|1566232 - symbol:Mrm1 "mitochondrial rRNA methyltrans... 123 5.4e-05 1
SGD|S000005727 - symbol:MRM1 "Ribose methyltransferase th... 124 6.6e-05 1
UNIPROTKB|Q3ABT2 - symbol:CHY_1573 "RNA methyltransferase... 120 7.1e-05 1
TIGR_CMR|CHY_1573 - symbol:CHY_1573 "RNA methyltransferas... 120 7.1e-05 1
WB|WBGene00012864 - symbol:Y45F3A.9 species:6239 "Caenorh... 121 7.4e-05 1
UNIPROTKB|K7EJT9 - symbol:MRM1 "rRNA methyltransferase 1,... 109 0.00012 1
UNIPROTKB|P94978 - symbol:tsnR "TrmH family RNA methyltra... 118 0.00012 1
DICTYBASE|DDB_G0273625 - symbol:DDB_G0273625 species:4468... 88 0.00015 2
DICTYBASE|DDB_G0273135 - symbol:DDB_G0273135 species:4468... 88 0.00015 2
UNIPROTKB|F1RGW6 - symbol:TARBP1 "Uncharacterized protein... 126 0.00024 1
UNIPROTKB|Q9KTT5 - symbol:VC_0803 "RNA methyltransferase,... 115 0.00026 1
TIGR_CMR|VC_0803 - symbol:VC_0803 "RNA methyltransferase,... 115 0.00026 1
UNIPROTKB|P96861 - symbol:MT3685 "Uncharacterized tRNA/rR... 116 0.00033 1
ZFIN|ZDB-GENE-090313-346 - symbol:tarbp1 "TAR (HIV-1) RNA... 124 0.00038 1
TAIR|locus:2130310 - symbol:AT4G15520 species:3702 "Arabi... 112 0.00039 1
TAIR|locus:2121075 - symbol:AT4G38020 species:3702 "Arabi... 116 0.00039 1
DICTYBASE|DDB_G0275919 - symbol:DDB_G0275919 "tRNA/rRNA m... 87 0.00045 2
MGI|MGI:1914640 - symbol:Rnmtl1 "RNA methyltransferase li... 112 0.00058 2
UNIPROTKB|E2QXE5 - symbol:RNMTL1 "Uncharacterized protein... 112 0.00060 2
UNIPROTKB|Q13395 - symbol:TARBP1 "Probable methyltransfer... 122 0.00065 1
UNIPROTKB|E1BBM0 - symbol:RNMTL1 "Uncharacterized protein... 109 0.00078 2
UNIPROTKB|F1RHK0 - symbol:RNMTL1 "Uncharacterized protein... 111 0.00098 2
>TAIR|locus:2151001 [details] [associations]
symbol:AT5G15390 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006396 "RNA
processing" evidence=IEA;ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001537 Pfam:PF00588 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 EMBL:AL353993 eggNOG:COG0566 EMBL:AK228831
IPI:IPI00546903 PIR:T49974 RefSeq:NP_197043.1 UniGene:At.31808
ProteinModelPortal:Q9LXE4 SMR:Q9LXE4 PaxDb:Q9LXE4 PRIDE:Q9LXE4
EnsemblPlants:AT5G15390.1 GeneID:831391 KEGG:ath:AT5G15390
TAIR:At5g15390 HOGENOM:HOG000006028 InParanoid:Q9LXE4 OMA:GLSDFGN
PhylomeDB:Q9LXE4 ProtClustDB:CLSN2687459 Genevestigator:Q9LXE4
Uniprot:Q9LXE4
Length = 350
Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
Identities = 219/358 (61%), Positives = 266/358 (74%)
Query: 1 MSTCRAIIR---TSFSFVEX---XXXXXXXXXXXXXXXXXXXPGPISPYSVRTRQYGSVQ 54
M++C+++IR +SF FV P + R +G+V
Sbjct: 1 MNSCKSLIRASISSFPFVPLPNPNFSITFISVRAFSPLSVLHPNSSCIVTARRTFHGAV- 59
Query: 55 AAISLENGNNLIDDENDTPSKDNVEKLLT-NPDDVTQFMKMERSCMVNDGVGSMESLSNK 113
A+S E+ + +E+ P KD V+ LLT N + + MKMER C +++G G
Sbjct: 60 -ALSPES----LTEES--P-KDTVKGLLTTNRGEASSLMKMERRCSLSNGEGDCRG---- 107
Query: 114 RWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGN 173
WFPY DR++CG+V+LSS EV+EA+SP++MEER +RF VV+NRSYSVCLVVEGLSDFGN
Sbjct: 108 SWFPYEDRFRCGEVHLSSREVLEAVSPHMMEERTDRFRRVVENRSYSVCLVVEGLSDFGN 167
Query: 174 VSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRG 233
+SA FRSADALG+QSVHVVSCDSSKRY NRHVSMGAEKWLDIE WD P+ECF VL+SRG
Sbjct: 168 ISAAFRSADALGIQSVHVVSCDSSKRYNGNRHVSMGAEKWLDIEFWDTPKECFKVLKSRG 227
Query: 234 YRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNV 293
YRIATTH+GMD +S+YDMDWSCPTAIVVGNE RG+SDEAL LSDLRCSIPM GMVDSFNV
Sbjct: 228 YRIATTHLGMDTVSIYDMDWSCPTAIVVGNEGRGISDEALELSDLRCSIPMNGMVDSFNV 287
Query: 294 SVAAGILMHHAVCDRATRLVGCNGDLTSEEKQILLAEFSLRHSKSAISIVHEYAKRKE 351
SVAAGILMHHAV DR TRL G +GDL+ EK+IL+AEFSLRHS+S+I I +E+AKRK+
Sbjct: 288 SVAAGILMHHAVSDRTTRL-GSHGDLSEAEKEILMAEFSLRHSRSSICIAYEFAKRKQ 344
>TIGR_CMR|CPS_4975 [details] [associations]
symbol:CPS_4975 "tRNA (guanosine-2'-O-)-methyltransferase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006396 "RNA
processing" evidence=ISS] [GO:0009020 "tRNA
(guanosine-2'-O-)-methyltransferase activity" evidence=ISS]
InterPro:IPR001537 InterPro:IPR022724 Pfam:PF00588 Pfam:PF12105
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0001510
eggNOG:COG0566 GO:GO:0009020 HOGENOM:HOG000285175 KO:K00556
ProtClustDB:PRK11081 RefSeq:YP_271614.1 ProteinModelPortal:Q47UA9
STRING:Q47UA9 GeneID:3523112 KEGG:cps:CPS_4975 PATRIC:21472743
OMA:VEKPHNL BioCyc:CPSY167879:GI48-4976-MONOMER Uniprot:Q47UA9
Length = 235
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 58/186 (31%), Positives = 100/186 (53%)
Query: 145 ERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENR 204
ER R ++ R + + +EGL N++A R+ DA+G+ VH V R
Sbjct: 4 ERLARINTMLDKRQPDLTVCMEGLHKSHNLAAVVRTCDAIGISDVHAVWKSEEAEVRGGS 63
Query: 205 HVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNE 264
+ G++ W+D+ + + L+++G ++ T++ A++ ++D++ PTAI++G E
Sbjct: 64 --AAGSQNWIDVHNYHKTADAIAALKAQGMQVLVTNLSDTAVNFTEIDYTKPTAIILGQE 121
Query: 265 NRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATRLVGCNGDLTSEEK 324
G S+EAL L+D IPM GMV S NVSVA ++++ A RA + L++E +
Sbjct: 122 KFGTSEEALELADQHIVIPMVGMVQSLNVSVACSVVLYEAQRQRAAAGMYDQPRLSNERR 181
Query: 325 QILLAE 330
Q L E
Sbjct: 182 QRTLFE 187
>UNIPROTKB|P0AGJ2 [details] [associations]
symbol:trmH species:83333 "Escherichia coli K-12"
[GO:0009020 "tRNA (guanosine-2'-O-)-methyltransferase activity"
evidence=IEA;IMP] [GO:0030488 "tRNA methylation" evidence=TAS]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0032259 "methylation" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001537 InterPro:IPR022724 Pfam:PF00588
Pfam:PF12105 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
EMBL:L10328 eggNOG:COG0566 EMBL:M24503 GO:GO:0009020 PIR:JV0043
RefSeq:NP_418108.1 RefSeq:YP_491783.1 ProteinModelPortal:P0AGJ2
SMR:P0AGJ2 DIP:DIP-35977N IntAct:P0AGJ2 PRIDE:P0AGJ2
EnsemblBacteria:EBESCT00000003689 EnsemblBacteria:EBESCT00000016548
GeneID:12933575 GeneID:948161 KEGG:ecj:Y75_p3523 KEGG:eco:b3651
PATRIC:32122789 EchoBASE:EB0960 EcoGene:EG10967
HOGENOM:HOG000285175 KO:K00556 OMA:VHAVWPT ProtClustDB:PRK11081
BioCyc:EcoCyc:EG10967-MONOMER BioCyc:ECOL316407:JW3626-MONOMER
BioCyc:MetaCyc:EG10967-MONOMER Genevestigator:P0AGJ2 Uniprot:P0AGJ2
Length = 229
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 62/187 (33%), Positives = 99/187 (52%)
Query: 146 RKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRH 205
R R ++ R + + +E + NVSA R+ADA+GV VH V S R R
Sbjct: 5 RYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGS--RMRTMAS 62
Query: 206 VSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNEN 265
+ G+ W+ ++ + L+ +G +I TH+ +A+ ++D++ PT I++G E
Sbjct: 63 AAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEK 122
Query: 266 RGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR--ATRLVGCNGDLTSEE 323
G++ EAL+L+D IPM GMV S NVSVA+ ++++ A R A + N L E
Sbjct: 123 TGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAE 182
Query: 324 KQILLAE 330
+Q LL E
Sbjct: 183 QQRLLFE 189
>DICTYBASE|DDB_G0271370 [details] [associations]
symbol:DDB_G0271370 "tRNA
guanosine-2'-O-methyltransferase" species:44689 "Dictyostelium
discoideum" [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001510 "RNA
methylation" evidence=IEA] InterPro:IPR001537 Pfam:PF00588
dictyBase:DDB_G0271370 GO:GO:0003723 EMBL:AAFI02000006
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566 KO:K00556
RefSeq:XP_645653.1 ProteinModelPortal:Q55BF9
EnsemblProtists:DDB0216794 GeneID:8617845 KEGG:ddi:DDB_G0271370
InParanoid:Q55BF9 OMA:CENLENQ ProtClustDB:CLSZ2729263
Uniprot:Q55BF9
Length = 310
Score = 155 (59.6 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 30/107 (28%), Positives = 62/107 (57%)
Query: 132 SEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHV 191
+ V + P++ ++R +RF + + NR+ +V E L + GN +A RSADA+G+Q++ +
Sbjct: 26 NNVSNKIKPFISDKRLKRFEDSINNRNKRFIIVCENLDNPGNFAAVVRSADAIGIQNLCL 85
Query: 192 VSCDSS--KRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRI 236
++ + + + VS+G+ KW+ + + + +C L+ +GY I
Sbjct: 86 INEGGNLDSNFEKYDRVSLGSGKWVTVNKYYSTTKCIEKLKEQGYSI 132
Score = 107 (42.7 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 258 AIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301
A+V GNE+ G+S+ SLSD R +PM G V+SFN+SV+ + +
Sbjct: 215 ALVFGNESNGISELMRSLSDRRFYLPMVGFVESFNISVSVAMTL 258
>UNIPROTKB|Q3A9P4 [details] [associations]
symbol:CHY_2335 "RNA methyltransferase, TrmH family, group
3" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
RefSeq:YP_361140.1 ProteinModelPortal:Q3A9P4 STRING:Q3A9P4
GeneID:3727244 KEGG:chy:CHY_2335 PATRIC:21277737 OMA:DKGFWIY
BioCyc:CHYD246194:GJCN-2334-MONOMER Uniprot:Q3A9P4
Length = 237
Score = 170 (64.9 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 57/183 (31%), Positives = 83/183 (45%)
Query: 130 SSSEVVEA-LSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQS 188
+ S+ VEA +SP E + + LV+ L D N+ A RSA+A GV
Sbjct: 57 AKSQGVEADISPVKYVEIDDILAIAERKAEPLFILVLNHLEDPQNLGAILRSAEAFGVHG 116
Query: 189 VHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDA--- 245
V + + + S GA + + E L+ +G + VG DA
Sbjct: 117 VIIPKRRAVQVTGAVAKASAGAYLKVPVARCTNVAETLRYLKEKGAWV----VGADAKSK 172
Query: 246 ISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAV 305
S++D D+ P A+V+G EN G++ L D SIPM G ++S N SVAA +LM V
Sbjct: 173 ASLWDTDFKLPLALVIGGENVGLTSHILRECDFTVSIPMVGTINSLNASVAAALLMAEVV 232
Query: 306 CDR 308
R
Sbjct: 233 RQR 235
>TIGR_CMR|CHY_2335 [details] [associations]
symbol:CHY_2335 "RNA methyltransferase, TrmH family, group
3" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] [GO:0008173 "RNA
methyltransferase activity" evidence=ISS] InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
RefSeq:YP_361140.1 ProteinModelPortal:Q3A9P4 STRING:Q3A9P4
GeneID:3727244 KEGG:chy:CHY_2335 PATRIC:21277737 OMA:DKGFWIY
BioCyc:CHYD246194:GJCN-2334-MONOMER Uniprot:Q3A9P4
Length = 237
Score = 170 (64.9 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 57/183 (31%), Positives = 83/183 (45%)
Query: 130 SSSEVVEA-LSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQS 188
+ S+ VEA +SP E + + LV+ L D N+ A RSA+A GV
Sbjct: 57 AKSQGVEADISPVKYVEIDDILAIAERKAEPLFILVLNHLEDPQNLGAILRSAEAFGVHG 116
Query: 189 VHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDA--- 245
V + + + S GA + + E L+ +G + VG DA
Sbjct: 117 VIIPKRRAVQVTGAVAKASAGAYLKVPVARCTNVAETLRYLKEKGAWV----VGADAKSK 172
Query: 246 ISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAV 305
S++D D+ P A+V+G EN G++ L D SIPM G ++S N SVAA +LM V
Sbjct: 173 ASLWDTDFKLPLALVIGGENVGLTSHILRECDFTVSIPMVGTINSLNASVAAALLMAEVV 232
Query: 306 CDR 308
R
Sbjct: 233 RQR 235
>TIGR_CMR|CPS_0784 [details] [associations]
symbol:CPS_0784 "RNA methyltransferase, TrmH family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] InterPro:IPR001537 Pfam:PF00588
GO:GO:0003723 GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566 RefSeq:YP_267533.1
ProteinModelPortal:Q488I1 STRING:Q488I1 GeneID:3520896
KEGG:cps:CPS_0784 PATRIC:21464873 HOGENOM:HOG000023814 OMA:ELCHESV
BioCyc:CPSY167879:GI48-870-MONOMER Uniprot:Q488I1
Length = 180
Score = 162 (62.1 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 42/149 (28%), Positives = 74/149 (49%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222
+V++ +++ N+ A R ADA ++ V V + ++ + S KW+ +E D+
Sbjct: 32 VVLDNVTNSYNIGAFIRLADAFAIEKVIVCGALTISD-KKMKKASRNEAKWVCVEYSDST 90
Query: 223 RECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSI 282
L G+ I + + +++ + + +V+GNE +GVS+ AL LS + I
Sbjct: 91 TASLQTLLDEGHAIYSVELCHESVDYTKVTYPAKCVLVLGNERKGVSEAALKLSLQQIHI 150
Query: 283 PMKGMVDSFNVSVAAGILMHHAVCDRATR 311
PM GM +S NVS A I++ A C R
Sbjct: 151 PMFGMGNSLNVSTAGAIVL--AECANQIR 177
>UNIPROTKB|Q47VA9 [details] [associations]
symbol:rlmB "23S rRNA (guanosine-2'-O-)-methyltransferase
RlmB" species:167879 "Colwellia psychrerythraea 34H" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0008649 "rRNA
methyltransferase activity" evidence=ISS] [GO:0031167 "rRNA
methylation" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008649 eggNOG:COG0566 OMA:IMGAEGK
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
InterPro:IPR024915 ProtClustDB:PRK11181 GO:GO:0070039
RefSeq:YP_271263.1 ProteinModelPortal:Q47VA9 SMR:Q47VA9
STRING:Q47VA9 GeneID:3522591 KEGG:cps:CPS_4616 PATRIC:21472055
BioCyc:CPSY167879:GI48-4625-MONOMER GO:GO:0000451 Uniprot:Q47VA9
Length = 251
Score = 165 (63.1 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 48/149 (32%), Positives = 80/149 (53%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYREN-RHVSMGAEKWLD-IELWD 220
L+++G++D N+ A R+ADA GVQ++ +V D++ + R V++GA + + +++ +
Sbjct: 105 LILDGVTDPHNLGACLRNADAAGVQAI-IVPKDNAAQITPTVRKVAVGAVESVPLVQVTN 163
Query: 221 APRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRC 280
R L+ +G I T G +YD+ S P A+V+G E +G+ D
Sbjct: 164 LSRT-MKQLQKQGVWIVGT-AGETDTCLYDVKLSGPMALVMGAEGKGMRRLTRENCDQLV 221
Query: 281 SIPMKGMVDSFNVSVAAGILMHHAVCDRA 309
+PM G V S NVSVA GI + V R+
Sbjct: 222 KLPMAGTVSSLNVSVATGICLFEMVRQRS 250
>TIGR_CMR|CPS_4616 [details] [associations]
symbol:CPS_4616 "RNA methyltransferase, TrmH family, group
3" species:167879 "Colwellia psychrerythraea 34H" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008649 eggNOG:COG0566 OMA:IMGAEGK
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
InterPro:IPR024915 ProtClustDB:PRK11181 GO:GO:0070039
RefSeq:YP_271263.1 ProteinModelPortal:Q47VA9 SMR:Q47VA9
STRING:Q47VA9 GeneID:3522591 KEGG:cps:CPS_4616 PATRIC:21472055
BioCyc:CPSY167879:GI48-4625-MONOMER GO:GO:0000451 Uniprot:Q47VA9
Length = 251
Score = 165 (63.1 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 48/149 (32%), Positives = 80/149 (53%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYREN-RHVSMGAEKWLD-IELWD 220
L+++G++D N+ A R+ADA GVQ++ +V D++ + R V++GA + + +++ +
Sbjct: 105 LILDGVTDPHNLGACLRNADAAGVQAI-IVPKDNAAQITPTVRKVAVGAVESVPLVQVTN 163
Query: 221 APRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRC 280
R L+ +G I T G +YD+ S P A+V+G E +G+ D
Sbjct: 164 LSRT-MKQLQKQGVWIVGT-AGETDTCLYDVKLSGPMALVMGAEGKGMRRLTRENCDQLV 221
Query: 281 SIPMKGMVDSFNVSVAAGILMHHAVCDRA 309
+PM G V S NVSVA GI + V R+
Sbjct: 222 KLPMAGTVSSLNVSVATGICLFEMVRQRS 250
>UNIPROTKB|Q4KJ63 [details] [associations]
symbol:rlmB "23S rRNA (guanosine-2'-O-)-methyltransferase
RlmB" species:220664 "Pseudomonas protegens Pf-5" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0000451 "rRNA 2'-O-methylation"
evidence=ISS] [GO:0070039 "rRNA (guanosine-2'-O-)-methyltransferase
activity" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 GO:GO:0003723 EMBL:CP000076
GenomeReviews:CP000076_GR eggNOG:COG0566 OMA:IMGAEGK
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
InterPro:IPR024915 GO:GO:0070039 RefSeq:YP_257720.1
ProteinModelPortal:Q4KJ63 SMR:Q4KJ63 STRING:Q4KJ63 GeneID:3481167
KEGG:pfl:PFL_0578 PATRIC:19870315 ProtClustDB:CLSK869002
BioCyc:PFLU220664:GIX8-579-MONOMER Uniprot:Q4KJ63
Length = 254
Score = 164 (62.8 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 47/149 (31%), Positives = 71/149 (47%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222
LV++G++D N+ A R+ADA G +V V S+ R V+ GA + + +
Sbjct: 100 LVLDGVTDPHNLGACLRTADAAGALAVLVPKDKSATLTPTVRKVACGAAEVIPLVAVTNL 159
Query: 223 RECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSI 282
L+ RG I T G +YD D + PT I++G E +G+ D +
Sbjct: 160 ARTLEKLQQRGLWIVGT-AGEAEQELYDQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRL 218
Query: 283 PMKGMVDSFNVSVAAGILMHHAVCDRATR 311
PM G V S NVSVA G+ + A+ R +
Sbjct: 219 PMAGSVSSLNVSVATGVCLFEAMRQRGAK 247
>TIGR_CMR|SO_3934 [details] [associations]
symbol:SO_3934 "RNA methyltransferase, TrmH family, group
3" species:211586 "Shewanella oneidensis MR-1" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006364 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0566 OMA:IMGAEGK TIGRFAMs:TIGR00186 HOGENOM:HOG000218798
KO:K03218 InterPro:IPR024915 ProtClustDB:PRK11181
RefSeq:NP_719465.1 ProteinModelPortal:Q8EAG8 SMR:Q8EAG8
GeneID:1171572 KEGG:son:SO_3934 PATRIC:23527546 Uniprot:Q8EAG8
Length = 246
Score = 162 (62.1 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 49/147 (33%), Positives = 74/147 (50%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDI-ELWDA 221
L+++G++D N+ A R+ADA GVQ + V +S V+ GA + + + ++ +
Sbjct: 100 LILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNL 159
Query: 222 PRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCS 281
R + L+ +G I T G +Y D P AI +G E +G+ + D S
Sbjct: 160 ARTMRH-LQEKGVWIVGT-AGEADCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVS 217
Query: 282 IPMKGMVDSFNVSVAAGILMHHAVCDR 308
IPM G V S NVSVA GI + AV R
Sbjct: 218 IPMSGSVSSLNVSVATGICLFEAVRQR 244
>UNIPROTKB|P63177 [details] [associations]
symbol:rlmB "23S rRNA 2'-O-ribose G2251 methyltransferase
monomer" species:83333 "Escherichia coli K-12" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0070039 "rRNA (guanosine-2'-O-)-methyltransferase activity"
evidence=IMP] [GO:0000453 "enzyme-directed rRNA 2'-O-methylation"
evidence=IMP] HAMAP:MF_01887 InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003723 EMBL:U14003 eggNOG:COG0566
OMA:IMGAEGK TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
InterPro:IPR024915 PIR:S56405 RefSeq:NP_418601.1 RefSeq:YP_492322.1
PDB:1GZ0 PDBsum:1GZ0 ProteinModelPortal:P63177 SMR:P63177
DIP:DIP-47866N IntAct:P63177 PaxDb:P63177 PRIDE:P63177
EnsemblBacteria:EBESCT00000002779 EnsemblBacteria:EBESCT00000017925
GeneID:12932817 GeneID:948694 KEGG:ecj:Y75_p4066 KEGG:eco:b4180
PATRIC:32123935 EchoBASE:EB2376 EcoGene:EG12483
ProtClustDB:PRK11181 BioCyc:EcoCyc:G7845-MONOMER
BioCyc:ECOL316407:JW4138-MONOMER BioCyc:MetaCyc:G7845-MONOMER
EvolutionaryTrace:P63177 Genevestigator:P63177 GO:GO:0070039
GO:GO:0000453 Uniprot:P63177
Length = 243
Score = 152 (58.6 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 57/206 (27%), Positives = 96/206 (46%)
Query: 105 GSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLV 164
G + L+N++ YLD G V+ ++ + P + + +++ + L+
Sbjct: 47 GVVIQLANRQ---YLDEKSDGAVHQG---IIARVKPGRQYQEND-LPDLIASLDQPFLLI 99
Query: 165 VEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLD-IELWDAPR 223
++G++D N+ A RSADA GV +V V S++ + V+ GA + + I + + R
Sbjct: 100 LDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLAR 159
Query: 224 ECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIP 283
+L+ I T G ++Y + A+V+G E G+ D SIP
Sbjct: 160 T-MRMLQEENIWIVGT-AGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIP 217
Query: 284 MKGMVDSFNVSVAAGILMHHAVCDRA 309
M G V S NVSVA GI + AV R+
Sbjct: 218 MAGSVSSLNVSVATGICLFEAVRQRS 243
>DICTYBASE|DDB_G0285499 [details] [associations]
symbol:DDB_G0285499 "Probable methyltransferase
TARBP1" species:44689 "Dictyostelium discoideum" [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001510 "RNA methylation" evidence=IEA] InterPro:IPR001537
Pfam:PF00588 dictyBase:DDB_G0285499 EMBL:AAFI02000079 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566
RefSeq:XP_638091.1 ProteinModelPortal:Q54N52
EnsemblProtists:DDB0186533 GeneID:8625137 KEGG:ddi:DDB_G0285499
InParanoid:Q54N52 OMA:EIFNIEC ProtClustDB:CLSZ2846707
Uniprot:Q54N52
Length = 1677
Score = 135 (52.6 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 35/151 (23%), Positives = 78/151 (51%)
Query: 153 VVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEK 212
VVK S+ +V + N++ R+ + ++ + VVS + +E +++++ AEK
Sbjct: 1518 VVKKARQSIIIVASFIDKIPNLAGLARTCEIFNIECL-VVSDLKIRDNKEFQNITVTAEK 1576
Query: 213 WLDIE-LWDAPRECFNVLR-SRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSD 270
WL +E + + + + +L+ S+GY + ++ + ++ + +V+G E G+
Sbjct: 1577 WLPMEEVAENDLKQYLLLKKSQGYSLLGVEQTSSSVLLNKFEFPQKSVLVLGKEKEGIPT 1636
Query: 271 EALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301
E ++L D IP G++ S NV V+ +++
Sbjct: 1637 EFINLLDKCIEIPQLGIIRSLNVHVSGSLMI 1667
Score = 80 (33.2 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 13/37 (35%), Positives = 28/37 (75%)
Query: 57 ISLENGN-NLIDDENDTPSKDNVEKLLTNPDDVTQFM 92
I ++NGN N DD+++ ++N++KL++N DD+ +++
Sbjct: 1455 IGVDNGNENDSDDDDENHKENNIKKLISNTDDIDEYI 1491
>ZFIN|ZDB-GENE-060526-229 [details] [associations]
symbol:mrm1 "mitochondrial rRNA methyltransferase 1
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008168 "methyltransferase
activity" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
InterPro:IPR001537 InterPro:IPR004441 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 ZFIN:ZDB-GENE-060526-229
GO:GO:0003723 GO:GO:0006396 GO:GO:0008173 GO:GO:0001510
TIGRFAMs:TIGR00186 GeneTree:ENSGT00390000018761 EMBL:CR753838
EMBL:CR753837 IPI:IPI00612311 Ensembl:ENSDART00000083137
ArrayExpress:F1QG96 Bgee:F1QG96 Uniprot:F1QG96
Length = 291
Score = 149 (57.5 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 56/180 (31%), Positives = 87/180 (48%)
Query: 141 YLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRY 200
++ EER + V KN+ + LV++G+ D N+ A RSA LGV + V S ++S
Sbjct: 112 FIKEERPITSLEV-KNQR-PLWLVLDGVQDPMNLGAILRSAYYLGVDRI-VSSINNSCPL 168
Query: 201 REN-RHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMD-------AISVYDMD 252
S G + +D+ + V G+++ T VG++ +S D
Sbjct: 169 TPTVSKASAGVMEVMDVFGCSNLKRMIKVKVEEGWQVVGT-VGLEEGSSQSNVLSCSDFK 227
Query: 253 WSCPTAIVVGNENRGVSDEALSLSDLRCSIP----MKGMVDSFNVSVAAGILMHHAVCDR 308
S PT +++G E G+S E L D+ +IP M V+S NVSVA GIL+H + R
Sbjct: 228 MSRPTLLLMGGEGDGLSSELRQLCDVLITIPPRRHMHPGVESLNVSVATGILLHSLLSTR 287
>UNIPROTKB|Q9F5K6 [details] [associations]
symbol:aviRb "23S rRNA
(uridine(2479)-2'-O)-methyltransferase" species:1938 "Streptomyces
viridochromogenes" [GO:0008650 "rRNA
(uridine-2'-O-)-methyltransferase activity" evidence=IDA]
[GO:0031167 "rRNA methylation" evidence=IDA] [GO:0032259
"methylation" evidence=IDA] [GO:0046677 "response to antibiotic"
evidence=IDA] InterPro:IPR001537 Pfam:PF00588 GO:GO:0046677
GO:GO:0003723 EMBL:AF333038 PDB:1X7O PDB:1X7P PDBsum:1X7O
PDBsum:1X7P ProteinModelPortal:Q9F5K6 SMR:Q9F5K6
BioCyc:MetaCyc:MONOMER-16328 EvolutionaryTrace:Q9F5K6 GO:GO:0008650
Uniprot:Q9F5K6
Length = 287
Score = 147 (56.8 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 47/144 (32%), Positives = 74/144 (51%)
Query: 172 GNVSATFRSADALGVQSVHVVSCDSSKRYR-ENRHVSMGAEKWLDIELWDAPRECFNVLR 230
GN+ + RSADALG + +V+ ++ Y ++ S G+ L +P E + +
Sbjct: 138 GNIGSIIRSADALGAHGL-IVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVMDWVE 196
Query: 231 SRGYRIATTH---VGMDA---ISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPM 284
+R R A T VG D V+D D++ PT +++GNE G+S+ +L D SIPM
Sbjct: 197 AR--RAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIPM 254
Query: 285 KGMVDSFNVSVAAGILMHHAVCDR 308
G S N + AA +++ AV R
Sbjct: 255 AGSASSLNAANAATAILYEAVRQR 278
>TIGR_CMR|CBU_0986 [details] [associations]
symbol:CBU_0986 "RNA methyltransferase, TrmH family, group
3" species:227377 "Coxiella burnetii RSA 493" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006364 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0566 OMA:IMGAEGK TIGRFAMs:TIGR00186 HOGENOM:HOG000218798
RefSeq:NP_819993.2 ProteinModelPortal:Q83CW6 SMR:Q83CW6
GeneID:1208881 KEGG:cbu:CBU_0986 PATRIC:17930695 KO:K03218
ProtClustDB:CLSK914460 BioCyc:CBUR227377:GJ7S-979-MONOMER
InterPro:IPR024915 Uniprot:Q83CW6
Length = 250
Score = 145 (56.1 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 45/150 (30%), Positives = 78/150 (52%)
Query: 155 KNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYREN-RHVSMGAEKW 213
K + ++ L+++G+ D N+ A RSA+A GV++V + D + R V+ GA +
Sbjct: 92 KRETPALLLILDGVKDPHNLGACLRSANAFGVRAV-IAPKDRAVGVTPVVRKVACGAAEM 150
Query: 214 LD-IELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEA 272
I + + R + L+ G I T V + + + ++D + AIV+G+E G+
Sbjct: 151 TPFIRVTNLSRT-IDWLQKEGVWIVGTAVEAETL-IQEIDLTGDIAIVLGSEGAGLRRLT 208
Query: 273 LSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302
D IP++G V+S NVSVA GI ++
Sbjct: 209 KERCDFLAQIPLRGSVESLNVSVACGICLY 238
>UNIPROTKB|F1S1B8 [details] [associations]
symbol:MRM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005739 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 KO:K15507 CTD:79922
GeneTree:ENSGT00390000018761 OMA:LCRYQVH EMBL:CU694881
RefSeq:NP_001231751.1 UniGene:Ssc.42962 Ensembl:ENSSSCT00000019255
GeneID:100513493 KEGG:ssc:100513493 Uniprot:F1S1B8
Length = 361
Score = 146 (56.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 53/161 (32%), Positives = 77/161 (47%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222
LV+EGL D N+ A RSA LGV+ V +S S GA + +D+ D
Sbjct: 155 LVLEGLQDPRNLGAVLRSAHFLGVEKVITSRKNSCPLTPVVSKASAGAMEVMDVFSTDDL 214
Query: 223 RECFNVLRSRGYRIATTHVG-----------MDAISVYDMDWSCPTAIVVGNENRGVSDE 271
+G+ +A T VG + S D W PT +V+GNE G+S E
Sbjct: 215 AGFLQAKARQGWLVAGT-VGCPGPEISPSSEVPITSCLDFLWDQPTLLVLGNEGSGLSRE 273
Query: 272 ALSLSDLRCSI-PMKGM---VDSFNVSVAAGILMHHAVCDR 308
+ L +I P + + ++S NVSVAAGIL+H ++C +
Sbjct: 274 VQASCQLLLTILPGRQLPPGLESLNVSVAAGILLH-SICSQ 313
>TIGR_CMR|GSU_1462 [details] [associations]
symbol:GSU_1462 "RNA methyltransferase, TrmH family, group
3" species:243231 "Geobacter sulfurreducens PCA" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0003723 GO:GO:0006396 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00186 HOGENOM:HOG000218798
KO:K03218 OMA:NITDPRN RefSeq:NP_952513.1 ProteinModelPortal:Q74D57
GeneID:2686213 KEGG:gsu:GSU1462 PATRIC:22025767
ProtClustDB:CLSK828365 BioCyc:GSUL243231:GH27-1441-MONOMER
Uniprot:Q74D57
Length = 245
Score = 140 (54.3 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 42/147 (28%), Positives = 65/147 (44%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYREN-RHVSMGAEKWLDIELWDA 221
LV++G+ D N+ A RSA G V ++ D + + +S GA + + +
Sbjct: 99 LVLDGIQDPHNLGALIRSAACAGAHGV-IIPRDRAAGVTASVEKISAGATETIPVAQVTN 157
Query: 222 PRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCS 281
+ L+ G+ T A S+Y D + IV+G E GV D +
Sbjct: 158 VVQALETLKEEGFWAFGT-ADSAASSLYSHDLTGNVVIVIGGEGEGVRPLVRKKCDFLVA 216
Query: 282 IPMKGMVDSFNVSVAAGILMHHAVCDR 308
IP+KG V S N SVA G+++ V R
Sbjct: 217 IPLKGGVSSLNASVAGGVVLFEVVRQR 243
>UNIPROTKB|Q9KNY2 [details] [associations]
symbol:rlmB "23S rRNA (guanosine-2'-O-)-methyltransferase
RlmB" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009451 "RNA modification" evidence=ISS] HAMAP:MF_01887
InterPro:IPR001537 InterPro:IPR004441 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0566 TIGRFAMs:TIGR00186 KO:K03218
InterPro:IPR024915 ProtClustDB:PRK11181 PIR:B82055
RefSeq:NP_232226.1 ProteinModelPortal:Q9KNY2 SMR:Q9KNY2
DNASU:2615615 GeneID:2615615 KEGG:vch:VC2598 PATRIC:20084222
OMA:SARDTHY Uniprot:Q9KNY2
Length = 247
Score = 140 (54.3 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 45/157 (28%), Positives = 69/157 (43%)
Query: 152 NVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAE 211
+++ + LV++G++D N+ A R+ADA GV +V V S+ V+ GA
Sbjct: 88 DILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAA 147
Query: 212 KWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE 271
+ + + L+ +G T G +Y + AIV+G E G+
Sbjct: 148 ETVPLVRVTNLARTMRALQEKGVWFVGT-AGEATHDIYQSKLTGSLAIVMGAEGDGMRRL 206
Query: 272 ALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
D IPM G V S NVSVA G+ + AV R
Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQR 243
>TIGR_CMR|BA_0091 [details] [associations]
symbol:BA_0091 "RNA methyltransferase, TrmH family, group
3" species:198094 "Bacillus anthracis str. Ames" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00186
HOGENOM:HOG000218798 KO:K03218 OMA:NITDPRN HSSP:P39290
RefSeq:NP_842659.1 RefSeq:YP_016695.1 RefSeq:YP_026377.1
ProteinModelPortal:Q81VU9 IntAct:Q81VU9 DNASU:1088222
EnsemblBacteria:EBBACT00000010027 EnsemblBacteria:EBBACT00000017271
EnsemblBacteria:EBBACT00000021093 GeneID:1088222 GeneID:2814905
GeneID:2851380 KEGG:ban:BA_0091 KEGG:bar:GBAA_0091 KEGG:bat:BAS0091
ProtClustDB:CLSK872622 BioCyc:BANT260799:GJAJ-102-MONOMER
BioCyc:BANT261594:GJ7F-104-MONOMER Uniprot:Q81VU9
Length = 247
Score = 140 (54.3 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 42/169 (24%), Positives = 74/169 (43%)
Query: 134 VVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193
V+ ++ Y E ++ F K L+++ + D N+ + R+ADA G + +
Sbjct: 69 VIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPK 128
Query: 194 CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDW 253
+ S GA +++ + + L+ RG IA T ++D
Sbjct: 129 RRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDA-KGKTDYRNLDG 187
Query: 254 SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302
P +V+G+E +G+S D ++PM G V S N SVAA +LM+
Sbjct: 188 KMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMY 236
>TIGR_CMR|VC_2598 [details] [associations]
symbol:VC_2598 "RNA methyltransferase, TrmH family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0009451 "RNA
modification" evidence=ISS] HAMAP:MF_01887 InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006364 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0566 TIGRFAMs:TIGR00186 KO:K03218 InterPro:IPR024915
ProtClustDB:PRK11181 PIR:B82055 RefSeq:NP_232226.1
ProteinModelPortal:Q9KNY2 SMR:Q9KNY2 DNASU:2615615 GeneID:2615615
KEGG:vch:VC2598 PATRIC:20084222 OMA:SARDTHY Uniprot:Q9KNY2
Length = 247
Score = 140 (54.3 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 45/157 (28%), Positives = 69/157 (43%)
Query: 152 NVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAE 211
+++ + LV++G++D N+ A R+ADA GV +V V S+ V+ GA
Sbjct: 88 DILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAA 147
Query: 212 KWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE 271
+ + + L+ +G T G +Y + AIV+G E G+
Sbjct: 148 ETVPLVRVTNLARTMRALQEKGVWFVGT-AGEATHDIYQSKLTGSLAIVMGAEGDGMRRL 206
Query: 272 ALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
D IPM G V S NVSVA G+ + AV R
Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQR 243
>TIGR_CMR|BA_4805 [details] [associations]
symbol:BA_4805 "RNA methyltransferase, TrmH family"
species:198094 "Bacillus anthracis str. Ames" [GO:0008173 "RNA
methyltransferase activity" evidence=ISS] [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR001537 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 HSSP:P39290 HOGENOM:HOG000218799 KO:K03437
OMA:AQGSHFH RefSeq:NP_847008.1 RefSeq:YP_021450.1
RefSeq:YP_030704.1 ProteinModelPortal:Q81L29 DNASU:1083938
EnsemblBacteria:EBBACT00000012902 EnsemblBacteria:EBBACT00000014455
EnsemblBacteria:EBBACT00000024420 GeneID:1083938 GeneID:2815769
GeneID:2851594 KEGG:ban:BA_4805 KEGG:bar:GBAA_4805 KEGG:bat:BAS4457
ProtClustDB:CLSK873510 BioCyc:BANT260799:GJAJ-4514-MONOMER
BioCyc:BANT261594:GJ7F-4667-MONOMER Uniprot:Q81L29
Length = 254
Score = 136 (52.9 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 42/142 (29%), Positives = 74/142 (52%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHV-VSCDSSKRYRENRHVSMGAEKWLDIELWDA 221
L+++GL D GN+ R+ADA G+ +V + C + + R + G+ L I +
Sbjct: 108 LLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRS-TQGSIFHLPIVKGNL 166
Query: 222 PRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCS 281
+E + L+ + T + + + ++ + A++VGNE GV E L+ +D
Sbjct: 167 -KEWVDKLKENNVPVYGTALE-NGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTDQNLY 224
Query: 282 IPMKGMVDSFNVSVAAGILMHH 303
IP+ G +S NV+VAAGIL ++
Sbjct: 225 IPIYGGAESLNVAVAAGILTYY 246
>UNIPROTKB|E2RN23 [details] [associations]
symbol:MRM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001537 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 GO:GO:0005739 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510
GeneTree:ENSGT00390000018761 OMA:LIGFHAV EMBL:AAEX03006610
Ensembl:ENSCAFT00000028320 Uniprot:E2RN23
Length = 346
Score = 139 (54.0 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 52/159 (32%), Positives = 73/159 (45%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222
LV+E L D N+ A RSA LGV V +S S GA + +D+ D
Sbjct: 150 LVLERLQDPRNLGAVLRSAHFLGVDKVITSGRNSCPLTPVVSKASAGAMEVMDVFSTDDL 209
Query: 223 RECFNVLRSRGYRIATTHVG-----MDA----ISVYDMDWSCPTAIVVGNENRGVSDEAL 273
+G+ +A T VG M + S + W PT +V+GNE G+S
Sbjct: 210 AGFLQAKARQGWLVAGT-VGCPRPEMSSEIPITSCLEFLWDQPTLLVLGNEGSGLSQAVQ 268
Query: 274 SLSDLRCSI-PMKGM---VDSFNVSVAAGILMHHAVCDR 308
+ L +I P + + ++S NVSVAAGIL+H C R
Sbjct: 269 ASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICCQR 307
>UNIPROTKB|Q6IN84 [details] [associations]
symbol:MRM1 "rRNA methyltransferase 1, mitochondrial"
species:9606 "Homo sapiens" [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0005739 EMBL:CH471199 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 KO:K15507 eggNOG:COG0566 EMBL:AK026231
EMBL:AK292307 EMBL:CR457357 EMBL:BC009416 EMBL:BC072411
IPI:IPI00784477 IPI:IPI00827737 RefSeq:NP_079140.2
UniGene:Hs.194864 HSSP:P63177 ProteinModelPortal:Q6IN84 SMR:Q6IN84
STRING:Q6IN84 PhosphoSite:Q6IN84 DMDM:74736506 PRIDE:Q6IN84
DNASU:79922 Ensembl:ENST00000250156 GeneID:79922 KEGG:hsa:79922
UCSC:uc002hne.3 UCSC:uc002hnf.3 CTD:79922 GeneCards:GC17P034958
H-InvDB:HIX0202428 HGNC:HGNC:26202 HPA:HPA021598 neXtProt:NX_Q6IN84
PharmGKB:PA142671338 HOGENOM:HOG000004826 HOVERGEN:HBG081986
InParanoid:Q6IN84 OMA:IMGAEGK OrthoDB:EOG45QHDH GenomeRNAi:79922
NextBio:69826 Bgee:Q6IN84 CleanEx:HS_MRM1 Genevestigator:Q6IN84
TIGRFAMs:TIGR00186 Uniprot:Q6IN84
Length = 353
Score = 138 (53.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 50/161 (31%), Positives = 76/161 (47%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222
LV++G+ D N A RSA LGV V +S S GA + +D+ D
Sbjct: 148 LVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDL 207
Query: 223 RECFNVLRSRGYRIATTHVGMDA-----------ISVYDMDWSCPTAIVVGNENRGVSDE 271
+G+ +A T VG + +S + W PT +V+GNE G+S E
Sbjct: 208 TGFLQTKAQQGWLVAGT-VGCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQE 266
Query: 272 ALSLSDLRCSI-PMKGM---VDSFNVSVAAGILMHHAVCDR 308
+ L +I P + + ++S NVSVAAGIL+H ++C +
Sbjct: 267 VQASCQLLLTILPRRQLPPGLESLNVSVAAGILLH-SICSQ 306
>UNIPROTKB|A7MBD2 [details] [associations]
symbol:MRM1 "MRM1 protein" species:9913 "Bos taurus"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005739 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 KO:K15507 CTD:79922
HOGENOM:HOG000004826 HOVERGEN:HBG081986
GeneTree:ENSGT00390000018761 OMA:LCRYQVH EMBL:DAAA02048419
EMBL:BC151494 IPI:IPI00717416 RefSeq:NP_001094596.1
UniGene:Bt.32975 STRING:A7MBD2 Ensembl:ENSBTAT00000013616
GeneID:526282 KEGG:bta:526282 InParanoid:A7MBD2 NextBio:20874335
Uniprot:A7MBD2
Length = 360
Score = 137 (53.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 53/161 (32%), Positives = 76/161 (47%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222
LV+EGL D N+ A RSA LGV V +S S GA + +D+ D
Sbjct: 155 LVLEGLQDPRNLGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGAMEVMDVFSTDDL 214
Query: 223 RECFNVLRSRGYRIATTHVGMD----AIS-------VYDMDWSCPTAIVVGNENRGVSDE 271
+G+ +A T VG A+S D W PT +V+GNE G+S
Sbjct: 215 AGFLQARARQGWLVAGT-VGCPGPEIALSSKIPVTRCLDFLWDRPTLLVLGNEGSGLSRA 273
Query: 272 ALSLSDLRCSI-PMKGM---VDSFNVSVAAGILMHHAVCDR 308
+ L +I P + + ++S NVSVAAGIL+H ++C +
Sbjct: 274 VQASCQLLLTILPGRQLPPGLESLNVSVAAGILLH-SICSQ 313
>TIGR_CMR|CJE_0149 [details] [associations]
symbol:CJE_0149 "RNA methyltransferase, TrmH family"
species:195099 "Campylobacter jejuni RM1221" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0003723 GO:GO:0006396 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566 TIGRFAMs:TIGR00186
HOGENOM:HOG000218798 KO:K03218 RefSeq:YP_178173.1
ProteinModelPortal:Q5HX12 STRING:Q5HX12 GeneID:3230912
KEGG:cjr:CJE0149 PATRIC:20042005 OMA:DARQPMA ProtClustDB:CLSK872377
BioCyc:CJEJ195099:GJC0-153-MONOMER Uniprot:Q5HX12
Length = 227
Score = 131 (51.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 50/170 (29%), Positives = 79/170 (46%)
Query: 141 YLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRY 200
+L++ ++ F N+ + + +++ G+SD GN+ A R+A ALGV ++ + K
Sbjct: 64 FLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIG---EKLA 120
Query: 201 RENR-HVSMGAEKWLDIELWDAPRECFNVLRSRG-YRIATTHVGMDAISVYDMDWSCPTA 258
E S GA L I + + N L+ G Y A+ G + SV +
Sbjct: 121 MEGVIRTSSGAALDLPIAISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGK--KV 178
Query: 259 IVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
+V+G+E G+S + + D I MK DS NVS A IL CDR
Sbjct: 179 LVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFAIL-----CDR 223
>UNIPROTKB|F1NX84 [details] [associations]
symbol:MRM1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005739 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 GeneTree:ENSGT00390000018761
OMA:LCRYQVH EMBL:AADN02025757 EMBL:AADN02025758 IPI:IPI00812536
Ensembl:ENSGALT00000008680 Uniprot:F1NX84
Length = 317
Score = 131 (51.2 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 46/159 (28%), Positives = 71/159 (44%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222
L +E + D N+ A RSA LGV V +S S GA + D+ D
Sbjct: 157 LALEQIQDPMNLGALLRSAYFLGVDRVVTSQRNSCPLTPTVSKASSGAMEVFDVYSTDDL 216
Query: 223 RECFNVLRSRGYRI------ATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLS 276
R + G+ + + T + IS + W+ P +V+G+E G+S E L
Sbjct: 217 RSFLKAKAAEGWEVVGTVSQSETVENVPVISCLEFRWNKPIILVIGSEGDGLSLETQLLC 276
Query: 277 DLRCSIPM-KGM---VDSFNVSVAAGILMHHAVCDRATR 311
IP + + ++S NVSVA GIL+H ++C + R
Sbjct: 277 HQMLVIPSGRALHPGIESLNVSVATGILLH-SICSQKLR 314
>MGI|MGI:2443470 [details] [associations]
symbol:Mrm1 "mitochondrial rRNA methyltransferase 1 homolog
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008168 "methyltransferase activity" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0032259
"methylation" evidence=IEA] InterPro:IPR001537 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 MGI:MGI:2443470
GO:GO:0005739 GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 EMBL:AL596083 KO:K15507 eggNOG:COG0566 CTD:79922
HOGENOM:HOG000004826 HOVERGEN:HBG081986 OrthoDB:EOG45QHDH
EMBL:AK156416 EMBL:AK164059 EMBL:AK163986 EMBL:BC005625
IPI:IPI00653261 RefSeq:NP_663408.2 UniGene:Mm.280825
ProteinModelPortal:Q99J25 SMR:Q99J25 STRING:Q99J25
PhosphoSite:Q99J25 PRIDE:Q99J25 Ensembl:ENSMUST00000018549
GeneID:217038 KEGG:mmu:217038 UCSC:uc007kqr.1
GeneTree:ENSGT00390000018761 InParanoid:Q99J25 OMA:LIGFHAV
ChiTaRS:MRM1 NextBio:375526 Bgee:Q99J25 Genevestigator:Q99J25
Uniprot:Q99J25
Length = 320
Score = 130 (50.8 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 50/162 (30%), Positives = 75/162 (46%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELW-DA 221
LV+EGL D N+ A RSA LGV V +S S GA + +D+ D
Sbjct: 146 LVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPDL 205
Query: 222 PRECFNVLRSRGYRIATTHVG-----------MDAISVYDMDWSCPTAIVVGNENRGVSD 270
P +G+ + T VG + S + W PT +V+G+E G+S
Sbjct: 206 PG-FLQAKAQQGWLVVGT-VGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQ 263
Query: 271 EALSLSDLRCSI-PMKGM---VDSFNVSVAAGILMHHAVCDR 308
E + L +I P + + ++S NVSVA GIL+H ++C +
Sbjct: 264 EVFASCQLLLTILPRRHLPPGLESLNVSVATGILLH-SICSQ 304
>ZFIN|ZDB-GENE-090313-347 [details] [associations]
symbol:si:dkey-85a20.4 "si:dkey-85a20.4"
species:7955 "Danio rerio" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001537 Pfam:PF00588 ZFIN:ZDB-GENE-090313-347
GO:GO:0003723 GO:GO:0006396 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0566 OrthoDB:EOG4S7JP4 GeneTree:ENSGT00390000003939
EMBL:BX324188 IPI:IPI00929029 UniGene:Dr.158172
Ensembl:ENSDART00000135999 Uniprot:B8A4Z4
Length = 191
Score = 120 (47.3 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 48/194 (24%), Positives = 92/194 (47%)
Query: 132 SEVVEALSPYLMEERKERFVNVVKNRSY------SVCLVVEGLSDFG-NVSATFRSADAL 184
+EV + +SP+ + +++ + + R+ S LVV L D N+ R+ +
Sbjct: 1 AEVQKKISPWKLSVQEQEPELMAQQRALRLGKLTSSLLVVASLIDKPTNLGGLCRTCEIF 60
Query: 185 GVQSVHVVSCDSSKRYRENRH--VSMGAEKWLDI-ELWDAPRECFNVLR-SRGYRIATTH 240
G +++ + DS + + + +S+ +E WL + E+ A F L+ S GY +
Sbjct: 61 GAKALVL---DSLRHVNDKQFQALSVSSELWLPMMEVKPAELSDFLQLKKSEGYWVIGVE 117
Query: 241 VGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGIL 300
++ S+ D + + +++GNE G+ L L D+ IP G+ S NV V+A +L
Sbjct: 118 QTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNVHVSAALL 177
Query: 301 M-----HHAVCDRA 309
+ H+ C+ A
Sbjct: 178 VWEYTRQHSGCNTA 191
>GENEDB_PFALCIPARUM|PF10_0300 [details] [associations]
symbol:PF10_0300 "RNA methyltransferase,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001537 Pfam:PF00588
GO:GO:0003723 GO:GO:0006396 EMBL:AE014185 GO:GO:0008173
GO:GO:0001510 RefSeq:XP_001347584.1 ProteinModelPortal:Q8IJ98
EnsemblProtists:PF10_0300:mRNA GeneID:810457 KEGG:pfa:PF10_0300
EuPathDB:PlasmoDB:PF3D7_1030700 HOGENOM:HOG000241207
ProtClustDB:CLSZ2431610 Uniprot:Q8IJ98
Length = 257
Score = 120 (47.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 43/161 (26%), Positives = 70/161 (43%)
Query: 150 FVN-VVKNRSYS---VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRE-NR 204
++N +K SY +V+ + NV RS A V + +V KR +E N
Sbjct: 38 YINDKLKKDSYEKIKTYVVIYNIGKKKNVGCIVRSCVAFNVHKIFIVG----KRKKEINF 93
Query: 205 HVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCP-TAIVVGN 263
+MG ++ IE +D E L + + ++A+S+ + TA + GN
Sbjct: 94 FGNMGTYDYITIEYFDNIYELKEYLTKHDILLYACEISVNALSITTNPYEHKDTAFLFGN 153
Query: 264 ENRGVSDEALSLSDLRCSIPMKGM-VDSFNVSVAAGILMHH 303
E G+ D L + D IP G S NVSV+ I++ +
Sbjct: 154 EGTGIHDNVLKICDKIIYIPQYGKGTASLNVSVSCAIILQN 194
Score = 41 (19.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 60 ENGNNLIDDENDTPSKDNVEKLLT 83
+N N I ND KD+ EK+ T
Sbjct: 30 DNNMNNISYINDKLKKDSYEKIKT 53
>UNIPROTKB|Q8IJ98 [details] [associations]
symbol:PF10_0300 "RNA methyltransferase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001537 Pfam:PF00588
GO:GO:0003723 GO:GO:0006396 EMBL:AE014185 GO:GO:0008173
GO:GO:0001510 RefSeq:XP_001347584.1 ProteinModelPortal:Q8IJ98
EnsemblProtists:PF10_0300:mRNA GeneID:810457 KEGG:pfa:PF10_0300
EuPathDB:PlasmoDB:PF3D7_1030700 HOGENOM:HOG000241207
ProtClustDB:CLSZ2431610 Uniprot:Q8IJ98
Length = 257
Score = 120 (47.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 43/161 (26%), Positives = 70/161 (43%)
Query: 150 FVN-VVKNRSYS---VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRE-NR 204
++N +K SY +V+ + NV RS A V + +V KR +E N
Sbjct: 38 YINDKLKKDSYEKIKTYVVIYNIGKKKNVGCIVRSCVAFNVHKIFIVG----KRKKEINF 93
Query: 205 HVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCP-TAIVVGN 263
+MG ++ IE +D E L + + ++A+S+ + TA + GN
Sbjct: 94 FGNMGTYDYITIEYFDNIYELKEYLTKHDILLYACEISVNALSITTNPYEHKDTAFLFGN 153
Query: 264 ENRGVSDEALSLSDLRCSIPMKGM-VDSFNVSVAAGILMHH 303
E G+ D L + D IP G S NVSV+ I++ +
Sbjct: 154 EGTGIHDNVLKICDKIIYIPQYGKGTASLNVSVSCAIILQN 194
Score = 41 (19.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 60 ENGNNLIDDENDTPSKDNVEKLLT 83
+N N I ND KD+ EK+ T
Sbjct: 30 DNNMNNISYINDKLKKDSYEKIKT 53
>RGD|1566232 [details] [associations]
symbol:Mrm1 "mitochondrial rRNA methyltransferase 1 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 RGD:1566232 GO:GO:0005739 GO:GO:0003723 GO:GO:0006396
EMBL:CH473948 GO:GO:0008173 GO:GO:0001510 KO:K15507 CTD:79922
OrthoDB:EOG45QHDH GeneTree:ENSGT00390000018761 IPI:IPI00368083
RefSeq:NP_001102302.1 UniGene:Rn.43486 Ensembl:ENSRNOT00000030885
GeneID:363661 KEGG:rno:363661 NextBio:683925 Uniprot:D3ZK81
Length = 320
Score = 123 (48.4 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 47/161 (29%), Positives = 72/161 (44%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222
LV+EG+ D N+ A RSA LGV V +S S GA + +D+
Sbjct: 146 LVLEGIQDPRNLGAVMRSAYFLGVDRVITSRRNSCPLTPVVSKASAGAMEVMDVFASPDL 205
Query: 223 RECFNVLRSRGYRIATTHVG-----------MDAISVYDMDWSCPTAIVVGNENRGVSDE 271
+G+ + T VG + S + W PT +V+GNE G+S
Sbjct: 206 ASFLQAKAQQGWLVVGT-VGCPGPEISQSSKVPVTSCLEFIWDRPTLLVLGNEGSGLSQG 264
Query: 272 ALSLSDLRCSI-PMKGM---VDSFNVSVAAGILMHHAVCDR 308
+ L +I P + + ++S NVSVA GIL+H ++C +
Sbjct: 265 VFATCQLLLTILPGRHLPPGLESLNVSVATGILLH-SICSQ 304
>SGD|S000005727 [details] [associations]
symbol:MRM1 "Ribose methyltransferase that modifies a
functionally critical" species:4932 "Saccharomyces cerevisiae"
[GO:0032259 "methylation" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001510 "RNA methylation" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0008989 "rRNA
(guanine-N1-)-methyltransferase activity" evidence=IDA] [GO:0000154
"rRNA modification" evidence=IDA] InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 SGD:S000005727 GO:GO:0005739 EMBL:BK006948
GO:GO:0003723 GO:GO:0008989 KO:K11594 EMBL:X03245
RefSeq:NP_014847.3 GeneID:854379 KEGG:sce:YOR204W
RefSeq:NP_014844.3 GeneID:854376 KEGG:sce:YOR201C KO:K15507
eggNOG:COG0566 TIGRFAMs:TIGR00186 GeneTree:ENSGT00390000018761
OrthoDB:EOG4W6S4P EMBL:L19947 EMBL:Z75107 PIR:S48881
ProteinModelPortal:P25270 SMR:P25270 DIP:DIP-2603N IntAct:P25270
MINT:MINT-425731 STRING:P25270 PaxDb:P25270 PeptideAtlas:P25270
EnsemblFungi:YOR201C CYGD:YOR201c HOGENOM:HOG000248090 OMA:AHVHARE
NextBio:976508 Genevestigator:P25270 GermOnline:YOR201C
Uniprot:P25270
Length = 412
Score = 124 (48.7 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 65/240 (27%), Positives = 102/240 (42%)
Query: 89 TQFMKMER-SCMVNDGVGSMESLSNKRWFPYLDRYKCGDVYLSSSEV-VEALSPYLMEER 146
T+ + R + + N GV + +L K P Y GD+ SS+ + + L + E
Sbjct: 168 TELVDKHRLNLLTNYGVHNNIALETKPLQPVEIAY-LGDMDTSSAALSIHELG-FNNENI 225
Query: 147 KERFVNVVKN--RSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENR 204
K + + + L ++ ++D N+ A RSA LGV + + + S
Sbjct: 226 PHELPYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVS 285
Query: 205 HVSMGAEKWLDIELWDAPRECFNVLRSRG-YRIATTHVGM---------DAISVYDMDWS 254
S GA + L I D P E F + G + T+H+ IS++D++
Sbjct: 286 KTSSGALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGL 345
Query: 255 C---PTAIVVGNENRGVSDEALSLSDLRCSIPMKGM----------VDSFNVSVAAGILM 301
C P +VVGNE++GV SD IP G+ VDS NVSVA +L+
Sbjct: 346 CNELPVVLVVGNESQGVRTNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405
>UNIPROTKB|Q3ABT2 [details] [associations]
symbol:CHY_1573 "RNA methyltransferase, TrmH family
protein" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001537
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566 HOGENOM:HOG000218799
KO:K03437 RefSeq:YP_360402.1 ProteinModelPortal:Q3ABT2
STRING:Q3ABT2 GeneID:3726319 KEGG:chy:CHY_1573 PATRIC:21276271
OMA:SSHARHA BioCyc:CHYD246194:GJCN-1572-MONOMER Uniprot:Q3ABT2
Length = 258
Score = 120 (47.3 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 39/142 (27%), Positives = 67/142 (47%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENR-HVSMGAEKWLDIELWDA 221
LV++GL D GNV R+A GV V ++ + Y S G + +A
Sbjct: 112 LVLDGLQDPGNVGTLLRAAFGFGVSGV-ILLPPAVDIYNPKVIRASAGTAFKFPVLRMEA 170
Query: 222 PRECFNVLRSR-GYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRC 280
+L++ +A + G+ ++ D+ + VGNE +G+S SL +
Sbjct: 171 DELKDIILKNNIPLFLAESEGGIPLTAI---DFPAKFFVAVGNEGQGISTTLKSLPHQKI 227
Query: 281 SIPMKGMVDSFNVSVAAGILMH 302
SIPM G ++S N ++A GI+++
Sbjct: 228 SIPMPGKIESLNAALAGGIIIY 249
>TIGR_CMR|CHY_1573 [details] [associations]
symbol:CHY_1573 "RNA methyltransferase, TrmH family
protein" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] [GO:0008173 "RNA
methyltransferase activity" evidence=ISS] InterPro:IPR001537
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566 HOGENOM:HOG000218799
KO:K03437 RefSeq:YP_360402.1 ProteinModelPortal:Q3ABT2
STRING:Q3ABT2 GeneID:3726319 KEGG:chy:CHY_1573 PATRIC:21276271
OMA:SSHARHA BioCyc:CHYD246194:GJCN-1572-MONOMER Uniprot:Q3ABT2
Length = 258
Score = 120 (47.3 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 39/142 (27%), Positives = 67/142 (47%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENR-HVSMGAEKWLDIELWDA 221
LV++GL D GNV R+A GV V ++ + Y S G + +A
Sbjct: 112 LVLDGLQDPGNVGTLLRAAFGFGVSGV-ILLPPAVDIYNPKVIRASAGTAFKFPVLRMEA 170
Query: 222 PRECFNVLRSR-GYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRC 280
+L++ +A + G+ ++ D+ + VGNE +G+S SL +
Sbjct: 171 DELKDIILKNNIPLFLAESEGGIPLTAI---DFPAKFFVAVGNEGQGISTTLKSLPHQKI 227
Query: 281 SIPMKGMVDSFNVSVAAGILMH 302
SIPM G ++S N ++A GI+++
Sbjct: 228 SIPMPGKIESLNAALAGGIIIY 249
>WB|WBGene00012864 [details] [associations]
symbol:Y45F3A.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588
Pfam:PF08032 SMART:SM00967 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 KO:K15507 eggNOG:COG0566
GeneTree:ENSGT00390000018761 EMBL:AL032621 PIR:T26946
RefSeq:NP_499333.1 HSSP:P39290 ProteinModelPortal:Q9XWY8 SMR:Q9XWY8
STRING:Q9XWY8 PaxDb:Q9XWY8 EnsemblMetazoa:Y45F3A.9 GeneID:3565184
KEGG:cel:CELE_Y45F3A.9 UCSC:Y45F3A.9 CTD:3565184 WormBase:Y45F3A.9
InParanoid:Q9XWY8 OMA:LCRYQVH NextBio:955513 Uniprot:Q9XWY8
Length = 294
Score = 121 (47.7 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 51/156 (32%), Positives = 76/156 (48%)
Query: 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENR-HVSMGAEKWLDIEL 218
+V + V+ + D GN+ A RSA G + +V K S GA + L ++
Sbjct: 131 TVSIFVDKVLDPGNLGAIGRSAWYFGADGLGLVKGRGPKSITPAMIKSSCGALEHLPVQQ 190
Query: 219 WDAPRECFNVLRSRGYR-IATTHVGMD---AISVYDMD-WSC--PTAIVVGNENRGVSDE 271
+ E + +++ G +AT G IS +D W+ P IV+G+E G+S
Sbjct: 191 FLNFNEFRDKIKAAGGELVATCDPGAAEKAGISAKSLDQWTPEKPVGIVLGDEGVGISRG 250
Query: 272 ALSLSDLRCSI-PMK--GM-VDSFNVSVAAGILMHH 303
L+L D SI P++ G V S NVSV AGIL+HH
Sbjct: 251 ILNLCDTVISISPVRKDGSNVTSLNVSVVAGILLHH 286
>UNIPROTKB|K7EJT9 [details] [associations]
symbol:MRM1 "rRNA methyltransferase 1, mitochondrial"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] InterPro:IPR001537
Pfam:PF00588 EMBL:CH471199 GO:GO:0008168 HGNC:HGNC:26202
EMBL:AC003042 Ensembl:ENST00000585770 Uniprot:K7EJT9
Length = 158
Score = 109 (43.4 bits), Expect = 0.00012, P = 0.00012
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 246 ISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSI-PMKGM---VDSFNVSVAAGILM 301
+S + W PT +V+GNE G+S E + L +I P + + ++S NVSVAAGIL+
Sbjct: 46 MSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLESLNVSVAAGILL 105
Query: 302 HHAVCDR 308
H ++C +
Sbjct: 106 H-SICSQ 111
>UNIPROTKB|P94978 [details] [associations]
symbol:tsnR "TrmH family RNA methyltransferase"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR001537
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0005886 GenomeReviews:AL123456_GR EMBL:BX842577 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 HOGENOM:HOG000218799
KO:K03437 EMBL:CP003248 PIR:G70619 RefSeq:NP_216160.1
RefSeq:YP_006515035.1 ProteinModelPortal:P94978 SMR:P94978
PRIDE:P94978 EnsemblBacteria:EBMYCT00000002199 GeneID:13316425
GeneID:885163 KEGG:mtu:Rv1644 KEGG:mtv:RVBD_1644 PATRIC:18152199
TubercuList:Rv1644 OMA:AQGSHFH ProtClustDB:CLSK791298
Uniprot:P94978
Length = 260
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 44/158 (27%), Positives = 73/158 (46%)
Query: 149 RFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYREN-RHVS 207
R +V+ + + VE + + GN R ADA+G +V +++ S Y S
Sbjct: 98 RLEDVLAGSPQLIAVTVE-IREPGNAGTVIRIADAMGAAAV-ILAGRSVDPYNGKCLRAS 155
Query: 208 MGAEKWLDIELWDAPRECFNVLRSRGYRIATTHV-GMDAISVYDMDWSCPTAIVVGNENR 266
G+ + + + LR+ G ++ T V G A+ D + PTA + G E
Sbjct: 156 TGSIFAIPVVVAPDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAH 215
Query: 267 GVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHA 304
G+S E +L+D R I M G +S NV+ AA I ++ +
Sbjct: 216 GLSAEIAALADHRVHILMSGGAESLNVAAAAAICLYES 253
>DICTYBASE|DDB_G0273625 [details] [associations]
symbol:DDB_G0273625 species:44689 "Dictyostelium
discoideum" [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001510 "RNA
methylation" evidence=IEA] InterPro:IPR001537 Pfam:PF00588
dictyBase:DDB_G0273625 dictyBase:DDB_G0273135 GO:GO:0003723
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 RefSeq:XP_644429.1 RefSeq:XP_644821.1
ProteinModelPortal:Q557D9 EnsemblProtists:DDB0168154
EnsemblProtists:DDB0217226 GeneID:8618923 GeneID:8619054
KEGG:ddi:DDB_G0273135 KEGG:ddi:DDB_G0273625 eggNOG:NOG135585
OMA:EDCRSLH ProtClustDB:CLSZ2431122 Uniprot:Q557D9
Length = 306
Score = 88 (36.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 36/186 (19%), Positives = 81/186 (43%)
Query: 61 NGNNL-IDDENDTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYL 119
N NN+ I++E + + +EK+ ++V + ME C ++ G + + NK
Sbjct: 50 NNNNIEINNEFNNNFQKKIEKIKDEEEEVDENQDME--C-TSEKCGLIFKIPNK--LRGK 104
Query: 120 DRY--KCGDVYLSSSEVVEALSPYLMEERKERFVNV-------------VKNRSYSVCLV 164
+ Y KC +V + + ++++R+E + N +KN+ + + ++
Sbjct: 105 EGYCPKCSNVMIFKKHASKYKK--ILKKRRELYSNTLHQEIKTIKSFDPIKNKPFGLSVL 162
Query: 165 VEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRE 224
+E NV + FR++D G +++ + +S+G+E D+ W +
Sbjct: 163 LEDCRSLHNVGSVFRTSDGAGFNHIYLCGLTGHPPNDQISKLSLGSE---DMVNWSVSND 219
Query: 225 CFNVLR 230
V++
Sbjct: 220 SIGVIK 225
Score = 72 (30.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 256 PTAIVVGNENRGVSDEALSLSDL 278
P AI++GNE G+SDEA+ L DL
Sbjct: 279 PIAIIMGNEIAGMSDEAIELCDL 301
>DICTYBASE|DDB_G0273135 [details] [associations]
symbol:DDB_G0273135 species:44689 "Dictyostelium
discoideum" [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001510 "RNA
methylation" evidence=IEA] InterPro:IPR001537 Pfam:PF00588
dictyBase:DDB_G0273625 dictyBase:DDB_G0273135 GO:GO:0003723
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 RefSeq:XP_644429.1 RefSeq:XP_644821.1
ProteinModelPortal:Q557D9 EnsemblProtists:DDB0168154
EnsemblProtists:DDB0217226 GeneID:8618923 GeneID:8619054
KEGG:ddi:DDB_G0273135 KEGG:ddi:DDB_G0273625 eggNOG:NOG135585
OMA:EDCRSLH ProtClustDB:CLSZ2431122 Uniprot:Q557D9
Length = 306
Score = 88 (36.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 36/186 (19%), Positives = 81/186 (43%)
Query: 61 NGNNL-IDDENDTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYL 119
N NN+ I++E + + +EK+ ++V + ME C ++ G + + NK
Sbjct: 50 NNNNIEINNEFNNNFQKKIEKIKDEEEEVDENQDME--C-TSEKCGLIFKIPNK--LRGK 104
Query: 120 DRY--KCGDVYLSSSEVVEALSPYLMEERKERFVNV-------------VKNRSYSVCLV 164
+ Y KC +V + + ++++R+E + N +KN+ + + ++
Sbjct: 105 EGYCPKCSNVMIFKKHASKYKK--ILKKRRELYSNTLHQEIKTIKSFDPIKNKPFGLSVL 162
Query: 165 VEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRE 224
+E NV + FR++D G +++ + +S+G+E D+ W +
Sbjct: 163 LEDCRSLHNVGSVFRTSDGAGFNHIYLCGLTGHPPNDQISKLSLGSE---DMVNWSVSND 219
Query: 225 CFNVLR 230
V++
Sbjct: 220 SIGVIK 225
Score = 72 (30.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 256 PTAIVVGNENRGVSDEALSLSDL 278
P AI++GNE G+SDEA+ L DL
Sbjct: 279 PIAIIMGNEIAGMSDEAIELCDL 301
>UNIPROTKB|F1RGW6 [details] [associations]
symbol:TARBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001537 Pfam:PF00588
GO:GO:0003723 GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 OMA:TVFRRDQ
InterPro:IPR025806 GeneTree:ENSGT00390000003939 PROSITE:PS51624
EMBL:CT737201 EMBL:CU329680 Ensembl:ENSSSCT00000011124
Uniprot:F1RGW6
Length = 1625
Score = 126 (49.4 bits), Expect = 0.00024, P = 0.00024
Identities = 43/151 (28%), Positives = 75/151 (49%)
Query: 157 RSYSVCLVVEGLSDFG-NVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLD 215
+S S +VV L D N+ R+ + G ++ VVS R ++ +H+S+ AE+WL
Sbjct: 1463 KSISRLVVVASLIDKPTNLGGLCRTCEVFGASAL-VVSSLQCIRDKQFQHLSVSAEQWLP 1521
Query: 216 IELWDAPR--ECFNVLRSRGYRIATTHVGMDAISVYDMDWSC-P--TAIVVGNENRGVSD 270
+ P+ + ++ GY I V A SV D+ C P + +++GNE G+
Sbjct: 1522 LVEVKPPQLIDYLQEKKAEGYTIVG--VEQTARSV-DLTQFCFPEKSLLLLGNEREGIPA 1578
Query: 271 EALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301
+ D+ IP +G++ S NV V+ +L+
Sbjct: 1579 NLIQQLDVCVEIPQQGIIRSLNVHVSGALLI 1609
>UNIPROTKB|Q9KTT5 [details] [associations]
symbol:VC_0803 "RNA methyltransferase, TrmH family"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009451 "RNA modification" evidence=ISS] InterPro:IPR001537
Pfam:PF00588 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 HSSP:P39290 KO:K03437
PIR:E82278 RefSeq:NP_230452.1 ProteinModelPortal:Q9KTT5
DNASU:2615346 GeneID:2615346 KEGG:vch:VC0803 PATRIC:20080715
OMA:WYGIKHI ProtClustDB:CLSK874114 Uniprot:Q9KTT5
Length = 257
Score = 115 (45.5 bits), Expect = 0.00026, P = 0.00026
Identities = 32/146 (21%), Positives = 70/146 (47%)
Query: 157 RSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENR-HVSMGAEKWLD 215
++ + + ++G+SD GN+ R AD G+ + + S D + Y +MG+ +
Sbjct: 111 KAQGLMIALDGVSDPGNLGTIIRVADWYGISHI-IASQDCADPYNPKTISATMGSFGRVQ 169
Query: 216 IELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSL 275
+ D P + L + ++ +SV+ + +++G+E+ G+ ++A
Sbjct: 170 VSQVDLP----DYLAKANLPVYGAF--LEGVSVHQTAFQAEGILLMGSESHGIREQAAQY 223
Query: 276 SDLRCSIPMKGMVDSFNVSVAAGILM 301
+ +IP G +S NV++A GI++
Sbjct: 224 VTDKITIPAFGGAESLNVAMATGIIL 249
>TIGR_CMR|VC_0803 [details] [associations]
symbol:VC_0803 "RNA methyltransferase, TrmH family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR001537 Pfam:PF00588
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 HSSP:P39290 KO:K03437 PIR:E82278
RefSeq:NP_230452.1 ProteinModelPortal:Q9KTT5 DNASU:2615346
GeneID:2615346 KEGG:vch:VC0803 PATRIC:20080715 OMA:WYGIKHI
ProtClustDB:CLSK874114 Uniprot:Q9KTT5
Length = 257
Score = 115 (45.5 bits), Expect = 0.00026, P = 0.00026
Identities = 32/146 (21%), Positives = 70/146 (47%)
Query: 157 RSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENR-HVSMGAEKWLD 215
++ + + ++G+SD GN+ R AD G+ + + S D + Y +MG+ +
Sbjct: 111 KAQGLMIALDGVSDPGNLGTIIRVADWYGISHI-IASQDCADPYNPKTISATMGSFGRVQ 169
Query: 216 IELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSL 275
+ D P + L + ++ +SV+ + +++G+E+ G+ ++A
Sbjct: 170 VSQVDLP----DYLAKANLPVYGAF--LEGVSVHQTAFQAEGILLMGSESHGIREQAAQY 223
Query: 276 SDLRCSIPMKGMVDSFNVSVAAGILM 301
+ +IP G +S NV++A GI++
Sbjct: 224 VTDKITIPAFGGAESLNVAMATGIIL 249
>UNIPROTKB|P96861 [details] [associations]
symbol:MT3685 "Uncharacterized tRNA/rRNA methyltransferase
Rv3579c/MT3685" species:1773 "Mycobacterium tuberculosis"
[GO:0040007 "growth" evidence=IMP] InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842583 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566 HSSP:P63177
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218 PIR:A70607
RefSeq:NP_218096.1 RefSeq:NP_338229.1 RefSeq:YP_006517069.1
ProteinModelPortal:P96861 SMR:P96861 PRIDE:P96861
EnsemblBacteria:EBMYCT00000001979 EnsemblBacteria:EBMYCT00000069688
GeneID:13317188 GeneID:888317 GeneID:926535 KEGG:mtc:MT3685
KEGG:mtu:Rv3579c KEGG:mtv:RVBD_3579c PATRIC:18129859
TubercuList:Rv3579c OMA:NITDPRN ProtClustDB:CLSK792577
Uniprot:P96861
Length = 322
Score = 116 (45.9 bits), Expect = 0.00033, P = 0.00033
Identities = 40/145 (27%), Positives = 65/145 (44%)
Query: 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELW 219
++ + ++ LSD N+ A RS A G V + S+ S GA + +
Sbjct: 160 ALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARA 219
Query: 220 DAPRECFNVLRSRGYRIATTHVGMDA---ISVYDMDWSCPTAIVVGNENRGVSDEALSLS 276
RG R+ +G+DA ++ D+D + +VVG+E +G+S
Sbjct: 220 TNLTRTLKGWADRGVRV----IGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNC 275
Query: 277 DLRCSIPMKGMVDSFNVSVAAGILM 301
D SIPM +S N SVAAG+++
Sbjct: 276 DEVVSIPMAAQAESLNASVAAGVVL 300
>ZFIN|ZDB-GENE-090313-346 [details] [associations]
symbol:tarbp1 "TAR (HIV-1) RNA binding protein 1"
species:7955 "Danio rerio" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001537 InterPro:IPR016024 Pfam:PF00588
ZFIN:ZDB-GENE-090313-346 SUPFAM:SSF48371 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 InterPro:IPR025806
GeneTree:ENSGT00390000003939 PROSITE:PS51624 EMBL:BX324188
IPI:IPI00961853 Ensembl:ENSDART00000113259 Uniprot:F1R356
Length = 1578
Score = 124 (48.7 bits), Expect = 0.00038, P = 0.00038
Identities = 51/203 (25%), Positives = 96/203 (47%)
Query: 125 GDVYLSS--SEVVEALSPYLMEERKERFVNVVKNRSY------SVCLVVEGLSDFG-NVS 175
GD+ L +EV + +SP+ + +++ + + R+ S LVV L D N+
Sbjct: 1379 GDLELEERWAEVQKKISPWKLSVQEQEPELMAQQRALRLGKLTSSLLVVASLIDKPTNLG 1438
Query: 176 ATFRSADALGVQSVHVVSCDSSKRYRENRH--VSMGAEKWLDI-ELWDAPRECFNVLR-S 231
R+ + G +++ + DS + + + +S+ +E WL + E+ A F L+ S
Sbjct: 1439 GLCRTCEIFGAKALVL---DSLRHVNDKQFQALSVSSELWLPMMEVKPAELSDFLQLKKS 1495
Query: 232 RGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSF 291
GY + ++ S+ D + + +++GNE G+ L L D+ IP G+ S
Sbjct: 1496 EGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSL 1555
Query: 292 NVSVAAGILM-----HHAVCDRA 309
NV V+A +L+ H+ C+ A
Sbjct: 1556 NVHVSAALLVWEYTRQHSGCNTA 1578
>TAIR|locus:2130310 [details] [associations]
symbol:AT4G15520 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA;ISS]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR001537 Pfam:PF00588 EMBL:CP002687 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 UniGene:At.44851
HSSP:P39290 EMBL:BT004979 EMBL:AK117406 IPI:IPI00545342
RefSeq:NP_193287.1 UniGene:At.66627 ProteinModelPortal:Q8GYT1
STRING:Q8GYT1 PRIDE:Q8GYT1 EnsemblPlants:AT4G15520.1 GeneID:827225
KEGG:ath:AT4G15520 OMA:MFRTADA ProtClustDB:CLSN2685602
Genevestigator:Q8GYT1 Uniprot:Q8GYT1
Length = 222
Score = 112 (44.5 bits), Expect = 0.00039, P = 0.00039
Identities = 41/143 (28%), Positives = 64/143 (44%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222
+VV ++ NV RSA A GV + +V R N S G+ + + +
Sbjct: 8 VVVHNIAKRHNVGTLARSATAFGVTELILVG-----RRDFNAFGSHGSASHIRFRHFHSL 62
Query: 223 RECFNVLRS-RGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCS 281
E N L+ + I + A +V + + TA ++GNE G+S + + D
Sbjct: 63 IEARNYLKEEKDCDICGVEIADGASAVNEHPFKRNTAFLLGNEGSGLSAKEYEICDFFVY 122
Query: 282 IPMKGM-VDSFNVSVAAGILMHH 303
IP G S NV+VAA I++HH
Sbjct: 123 IPQYGCGTASLNVTVAASIVLHH 145
>TAIR|locus:2121075 [details] [associations]
symbol:AT4G38020 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006396 "RNA
processing" evidence=IEA;ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001537 Pfam:PF00588 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0566 HSSP:P39290 UniGene:At.31211
EMBL:BT024884 EMBL:AK117528 IPI:IPI00535166 RefSeq:NP_195515.2
ProteinModelPortal:Q8GYL4 STRING:Q8GYL4 PaxDb:Q8GYL4 PRIDE:Q8GYL4
EnsemblPlants:AT4G38020.1 GeneID:829958 KEGG:ath:AT4G38020
TAIR:At4g38020 HOGENOM:HOG000218799 InParanoid:Q8GYL4 KO:K03437
OMA:VYIPEGK PhylomeDB:Q8GYL4 ProtClustDB:CLSN2680315
Genevestigator:Q8GYL4 Uniprot:Q8GYL4
Length = 352
Score = 116 (45.9 bits), Expect = 0.00039, P = 0.00039
Identities = 44/153 (28%), Positives = 75/153 (49%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVS--CD--SSKRYRENRHVSMG----AEKWL 214
LV++ + D GN+ RSA A ++ CD + K R +R S + W
Sbjct: 199 LVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLPIVSGNWN 258
Query: 215 DIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSC-----PTAIVVGNENRGVS 269
++L + E F + G+ ATT + +S ++++ P +++G+E G+S
Sbjct: 259 HLKLLE--NE-FQMKLLAGHP-ATTTQKLKPVSKLSVEFAQSLAEKPLCLILGSEGNGLS 314
Query: 270 DEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302
++A + L SIPM G +S NVSVA GI ++
Sbjct: 315 EQARKVCVL-VSIPMAGDFESLNVSVAGGIFLY 346
>DICTYBASE|DDB_G0275919 [details] [associations]
symbol:DDB_G0275919 "tRNA/rRNA methyltransferase SpoU
family protein" species:44689 "Dictyostelium discoideum"
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001510 "RNA methylation" evidence=IEA]
InterPro:IPR001537 Pfam:PF00588 dictyBase:DDB_G0275919
GO:GO:0003723 EMBL:AAFI02000013 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0566 RefSeq:XP_643609.1
ProteinModelPortal:Q552S2 EnsemblProtists:DDB0217723 GeneID:8620196
KEGG:ddi:DDB_G0275919 InParanoid:Q552S2 Uniprot:Q552S2
Length = 787
Score = 87 (35.7 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 256 PTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301
P +V+G+E +G+S S + SIP G+++S NVS A+ I++
Sbjct: 637 PIVLVLGSETKGISRTISKKSTVSISIPGTGLIESLNVSQASSIIL 682
Score = 79 (32.9 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 34/126 (26%), Positives = 56/126 (44%)
Query: 128 YLSSSEVVEALSPYLMEERKERFVNVVKNRSYS-----VCLVVEGLSDFGNVSATFRSAD 182
+LS+S + + E K + +N +K S V L+++G+ + N+ A RSA
Sbjct: 469 FLSNSPFTNKVHSFSSEFSKSKILNQIKFNSLGSGSKPVVLLLDGIENPQNIGAIIRSAV 528
Query: 183 ALGVQSVHVVS-----CDSSKRYR-ENRHVSMGAEKWLDIELWDAPRECFNVLRS---RG 233
GV+SV V+ S Y E+ S GA ++ +I R+ VL G
Sbjct: 529 LFGVESVIFVNEFDKKTGSINPYSAESYRSSRGAVEYCNISQLYLRRDAAEVLDEFVENG 588
Query: 234 YRIATT 239
+ + TT
Sbjct: 589 WEVVTT 594
>MGI|MGI:1914640 [details] [associations]
symbol:Rnmtl1 "RNA methyltransferase like 1" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0032259 "methylation" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 MGI:MGI:1914640 GO:GO:0005739 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 EMBL:AL591129
eggNOG:COG0566 GeneTree:ENSGT00390000017317 CTD:55178
HOGENOM:HOG000154151 HOVERGEN:HBG108411 OMA:RYDKAFP
OrthoDB:EOG4PG619 EMBL:AK014739 EMBL:AK147805 EMBL:BC038288
EMBL:BC090975 EMBL:BC115622 EMBL:BC115623 IPI:IPI00344090
RefSeq:NP_899086.2 UniGene:Mm.24886 ProteinModelPortal:Q5ND52
SMR:Q5ND52 STRING:Q5ND52 PhosphoSite:Q5ND52 PRIDE:Q5ND52
Ensembl:ENSMUST00000040577 GeneID:67390 KEGG:mmu:67390
UCSC:uc007kfn.2 InParanoid:Q5ND52 NextBio:324432 Bgee:Q5ND52
CleanEx:MM_RNMTL1 Genevestigator:Q5ND52 Uniprot:Q5ND52
Length = 418
Score = 112 (44.5 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 246 ISVYDMDWS-CPTAIVVGNENRGVSDEALSLSDL----RCSIPMKGMVDSFNVSVAAGIL 300
+ YD+DW+ P A+V+G E GVS E+L L++ R IP+ VDS N ++AA IL
Sbjct: 337 VQSYDLDWTGAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASIL 396
Query: 301 M 301
+
Sbjct: 397 L 397
Score = 44 (20.5 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSV 189
L+ + L D GN+ RSA G V
Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKV 238
>UNIPROTKB|E2QXE5 [details] [associations]
symbol:RNMTL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001537 InterPro:IPR013123
Pfam:PF00588 Pfam:PF08032 SMART:SM00967 GO:GO:0005739 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510
GeneTree:ENSGT00390000017317 CTD:55178 OMA:RYDKAFP
EMBL:AAEX03006687 RefSeq:XP_853914.1 Ensembl:ENSCAFT00000030363
GeneID:611179 KEGG:cfa:611179 Uniprot:E2QXE5
Length = 423
Score = 112 (44.5 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 246 ISVYDMDWS-CPTAIVVGNENRGVSDEALSLSDL----RCSIPMKGMVDSFNVSVAAGIL 300
+ YD+DW+ P A+V+G E GVS E+L L++ R IP+ VDS N ++AA IL
Sbjct: 342 VQSYDLDWTEAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASIL 401
Query: 301 M 301
+
Sbjct: 402 L 402
Score = 44 (20.5 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSV 189
L+ + L D GN+ RSA G V
Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKV 238
>UNIPROTKB|Q13395 [details] [associations]
symbol:TARBP1 "Probable methyltransferase TARBP1"
species:9606 "Homo sapiens" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] InterPro:IPR001537
InterPro:IPR016024 Pfam:PF00588 GO:GO:0005634 SUPFAM:SSF48371
GO:GO:0006357 GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 EMBL:AL355472 eggNOG:COG0566 EMBL:U38847
EMBL:AL136124 IPI:IPI00298447 PIR:S62356 RefSeq:NP_005637.3
UniGene:Hs.498115 PDB:2HA8 PDBsum:2HA8 ProteinModelPortal:Q13395
SMR:Q13395 IntAct:Q13395 STRING:Q13395 PhosphoSite:Q13395
DMDM:74739787 PaxDb:Q13395 PRIDE:Q13395 DNASU:6894
Ensembl:ENST00000040877 GeneID:6894 KEGG:hsa:6894 UCSC:uc001hwd.3
CTD:6894 GeneCards:GC01M234527 HGNC:HGNC:11568 HPA:CAB020810
HPA:HPA024632 MIM:605052 neXtProt:NX_Q13395 PharmGKB:PA36333
HOGENOM:HOG000154511 HOVERGEN:HBG094026 InParanoid:Q13395
OMA:TVFRRDQ OrthoDB:EOG4S7JP4 PhylomeDB:Q13395 BindingDB:Q13395
ChEMBL:CHEMBL2807 ChiTaRS:TARBP1 EvolutionaryTrace:Q13395
GenomeRNAi:6894 NextBio:26945 Bgee:Q13395 CleanEx:HS_TARBP1
Genevestigator:Q13395 InterPro:IPR025806 Uniprot:Q13395
Length = 1621
Score = 122 (48.0 bits), Expect = 0.00065, P = 0.00065
Identities = 39/151 (25%), Positives = 72/151 (47%)
Query: 157 RSYSVCLVVEGLSDFG-NVSATFRSADALGVQSVHVVS---CDSSKRYRENRHVSMGAEK 212
+S S +VV L D N+ R+ + G SV VV C S K+++ H+S+ AE+
Sbjct: 1459 KSISRLIVVASLIDKPTNLGGLCRTCEVFGA-SVLVVGSLQCISDKQFQ---HLSVSAEQ 1514
Query: 213 WLDIELWDAPR--ECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSD 270
WL + P+ + ++ GY I ++ + + + +++GNE G+
Sbjct: 1515 WLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPA 1574
Query: 271 EALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301
+ D+ IP +G++ S NV V+ +L+
Sbjct: 1575 NLIQQLDVCVEIPQQGIIRSLNVHVSGALLI 1605
>UNIPROTKB|E1BBM0 [details] [associations]
symbol:RNMTL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005739 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 GeneTree:ENSGT00390000017317
OMA:RYDKAFP EMBL:DAAA02048649 IPI:IPI01000980
Ensembl:ENSBTAT00000025502 Uniprot:E1BBM0
Length = 417
Score = 109 (43.4 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 246 ISVYDMDWS-CPTAIVVGNENRGVSDEALSLSDL----RCSIPMKGMVDSFNVSVAAGIL 300
+ YD DW+ P A+V+G E GVS E+L L++ R IP+ VDS N ++AA IL
Sbjct: 342 VQSYDSDWTEAPAAVVIGGETHGVSLESLQLAESTGGGRLLIPVVPGVDSLNSAMAASIL 401
Query: 301 M 301
+
Sbjct: 402 L 402
Score = 46 (21.3 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 161 VCLVVEGLSDFGNVSATFRSADALGVQSV 189
+ L+ + L D GN+ RSA G V
Sbjct: 212 ISLICDNLRDPGNLGTILRSAAGAGCSKV 240
>UNIPROTKB|F1RHK0 [details] [associations]
symbol:RNMTL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001537 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 GO:GO:0005739 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 GeneTree:ENSGT00390000017317
OMA:RYDKAFP EMBL:CU928997 Ensembl:ENSSSCT00000019379 Uniprot:F1RHK0
Length = 424
Score = 111 (44.1 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 246 ISVYDMDWS-CPTAIVVGNENRGVSDEALSLSDL----RCSIPMKGMVDSFNVSVAAGIL 300
+ YD DW+ P A+V+G E GVS E+L L++ R IP+ VDS N ++AA IL
Sbjct: 343 VQTYDADWTEAPAAVVIGGETHGVSLESLQLAESTGGGRLLIPVVPGVDSLNSAMAASIL 402
Query: 301 M 301
+
Sbjct: 403 L 403
Score = 43 (20.2 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSV 189
L+ + L D GN+ RSA G V
Sbjct: 214 LICDNLRDPGNLGTILRSAAGAGCSRV 240
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.131 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 358 338 0.00094 116 3 11 22 0.39 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 53
No. of states in DFA: 614 (65 KB)
Total size of DFA: 240 KB (2131 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.92u 0.08s 28.00t Elapsed: 00:00:01
Total cpu time: 27.93u 0.08s 28.01t Elapsed: 00:00:01
Start: Sat May 11 06:39:19 2013 End: Sat May 11 06:39:20 2013