BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018308
(358 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O67577|TRMH_AQUAE tRNA (guanosine(18)-2'-O)-methyltransferase OS=Aquifex aeolicus
(strain VF5) GN=trmH PE=1 SV=1
Length = 211
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 111/191 (58%), Gaps = 1/191 (0%)
Query: 142 LMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR 201
++E+R +R V++ R + + + + + N SA R+ DA+GV ++ + K+ +
Sbjct: 7 VLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEG-KKAK 65
Query: 202 ENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVV 261
N ++ G+ KW+ IE D P + ++RG++I T + ++++ ++D++ PT +VV
Sbjct: 66 INEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVV 125
Query: 262 GNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATRLVGCNGDLTS 321
GNE +GVS E + ++D + IPM GM S NVSVA GI+++ A R + + L+
Sbjct: 126 GNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQREEKGMYSRPSLSE 185
Query: 322 EEKQILLAEFS 332
EE Q +L +++
Sbjct: 186 EEIQKILKKWA 196
>sp|P0AGJ4|TRMH_SHIFL tRNA (guanosine(18)-2'-O)-methyltransferase OS=Shigella flexneri
GN=trmH PE=3 SV=1
Length = 229
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 11/207 (5%)
Query: 146 RKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRH 205
R R ++ R + + +E + NVSA R+ADA+GV VH V S R R
Sbjct: 5 RYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGS--RMRTMAS 62
Query: 206 VSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNEN 265
+ G+ W+ ++ + L+ +G +I TH+ +A+ ++D++ PT I++G E
Sbjct: 63 AAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEK 122
Query: 266 RGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR--ATRLVGCNGDLTSEE 323
G++ EAL+L+D IPM GMV S NVSVA+ ++++ A R A + N L E
Sbjct: 123 TGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAE 182
Query: 324 KQILLAEFSLRHSKSAISIVHEYAKRK 350
+Q LL E ++ + AKRK
Sbjct: 183 QQRLLFE-------GGYPVLAKVAKRK 202
>sp|P0AGJ2|TRMH_ECOLI tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli
(strain K12) GN=trmH PE=1 SV=1
Length = 229
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 11/207 (5%)
Query: 146 RKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRH 205
R R ++ R + + +E + NVSA R+ADA+GV VH V S R R
Sbjct: 5 RYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGS--RMRTMAS 62
Query: 206 VSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNEN 265
+ G+ W+ ++ + L+ +G +I TH+ +A+ ++D++ PT I++G E
Sbjct: 63 AAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEK 122
Query: 266 RGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR--ATRLVGCNGDLTSEE 323
G++ EAL+L+D IPM GMV S NVSVA+ ++++ A R A + N L E
Sbjct: 123 TGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAE 182
Query: 324 KQILLAEFSLRHSKSAISIVHEYAKRK 350
+Q LL E ++ + AKRK
Sbjct: 183 QQRLLFE-------GGYPVLAKVAKRK 202
>sp|P0AGJ3|TRMH_ECO57 tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli
O157:H7 GN=trmH PE=3 SV=1
Length = 229
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 11/207 (5%)
Query: 146 RKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRH 205
R R ++ R + + +E + NVSA R+ADA+GV VH V S R R
Sbjct: 5 RYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGS--RMRTMAS 62
Query: 206 VSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNEN 265
+ G+ W+ ++ + L+ +G +I TH+ +A+ ++D++ PT I++G E
Sbjct: 63 AAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEK 122
Query: 266 RGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR--ATRLVGCNGDLTSEE 323
G++ EAL+L+D IPM GMV S NVSVA+ ++++ A R A + N L E
Sbjct: 123 TGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAE 182
Query: 324 KQILLAEFSLRHSKSAISIVHEYAKRK 350
+Q LL E ++ + AKRK
Sbjct: 183 QQRLLFE-------GGYPVLAKVAKRK 202
>sp|O51081|Y052_BORBU Putative tRNA/rRNA methyltransferase BB_0052 OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=BB_0052 PE=3 SV=1
Length = 218
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Query: 135 VEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSC 194
+ LS ++ +E+K R V+ R+ + V+E + N SAT R+ + LG+ VHV+
Sbjct: 9 IGVLSKFITDEKKARIEKVLNLRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVI-- 66
Query: 195 DSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWS 254
+ ++ N V++G+ +W+++ + + + L+S GY I T + +I++ ++ +
Sbjct: 67 EKKNKHTLNPDVTLGSSQWINLNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTIN 126
Query: 255 CPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302
AI G E G+S E L +DL IPM G S+N+SVA I+M+
Sbjct: 127 NKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMY 174
>sp|Q6FF50|RLMB_ACIAD 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Acinetobacter
sp. (strain ADP1) GN=rlmB PE=3 SV=1
Length = 248
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 134 VVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193
VV A+ P+ + K+ +++N ++ L ++ ++D N+ A R+A A+G+ +V V
Sbjct: 72 VVAAVRPHPVLNEKD-LDQLLQNNDQALLLALDQVTDPHNLGACIRTAAAMGIAAVIVPR 130
Query: 194 CDSSKRYRENRHVSMG-AEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMD 252
S+ R V+ G AEK I++ + R ++ ++ T + A+ + D
Sbjct: 131 DRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHIKAHFFVKVVGTMLDEKALPIQKYD 190
Query: 253 WSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
+S AIV+G E+ G+ S D IPM G + S NVSVAAG+ ++ A R
Sbjct: 191 FSGNVAIVMGAEDTGLRPITQSQCDQTVYIPMSGNLQSLNVSVAAGMALYEACRQR 246
>sp|Q87VK2|RLMB_PSESM 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=rlmB PE=3 SV=1
Length = 250
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 1/157 (0%)
Query: 155 KNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWL 214
++ + LV++G++D N+ A R+ADA G +V V S+ R V+ GA + +
Sbjct: 92 RSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAVIVPKDKSATLTPAVRKVACGAAEVI 151
Query: 215 DIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALS 274
+ L+ RG + T G + +Y D + PT I++G E +G+
Sbjct: 152 PLVAVTNLARTLEKLQQRGLWVVGT-AGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTRE 210
Query: 275 LSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATR 311
D +PM G V S NVSVA G+ + A+ R+ +
Sbjct: 211 HCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSAK 247
>sp|Q9HUM8|RLMB_PSEAE 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rlmB PE=3 SV=1
Length = 248
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 142 LMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR 201
++EE ER + + L ++G++D N+ A R+ADA GVQ+V V S+
Sbjct: 85 MLEELLER------SEGVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNA 138
Query: 202 ENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVV 261
R V+ GA + + + L+ RG + T D ++Y +D PT +V+
Sbjct: 139 TVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADK-TLYQLDLKGPTVLVM 197
Query: 262 GNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301
G E +G+ D +PM G V S NVSVA G+ +
Sbjct: 198 GAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCL 237
>sp|Q4L3J1|TRMHL_STAHJ Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH2477 PE=3 SV=1
Length = 249
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 9/183 (4%)
Query: 134 VVEALSPYLMEERKERFVNVVKNR-SYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVV 192
V ++PY + ++F+ K++ S ++++GL D N+ + R+ADA GV V +
Sbjct: 69 VAALIAPYEYADF-DQFIQSQKDKEGLSTVVILDGLEDPHNLGSILRTADASGVDGVIIP 127
Query: 193 SCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMD 252
S + S GA + + + + + L+ GY +A +A DM
Sbjct: 128 KRRSVALTQTVAKASTGAIQHVPVMRVTNLAKTIDELKEHGYWVAGAEAD-NATDYRDMA 186
Query: 253 WSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH------HAVC 306
P AIV+G+E +G+S D IPM G V+S N SVAA ++M+ H V
Sbjct: 187 ADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEVYRKRHQVG 246
Query: 307 DRA 309
D A
Sbjct: 247 DNA 249
>sp|Q8CTT9|TRMHL_STAES Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_0294 PE=3 SV=2
Length = 249
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 1/169 (0%)
Query: 134 VVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193
V ++PY E K YS ++++GL D N+ + R+ADA GV +V +
Sbjct: 69 VAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADASGVDAVIIPK 128
Query: 194 CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDW 253
S + S GA + + + + + L+ G+ IA T +A D+
Sbjct: 129 RRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGTEAN-NATDYRDLQA 187
Query: 254 SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302
IV+G+E +G+S D IPM G V+S N SVAA ++M+
Sbjct: 188 DMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMY 236
>sp|Q5HRM1|TRMHL_STAEQ Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP0172 PE=3
SV=1
Length = 249
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 1/169 (0%)
Query: 134 VVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193
V ++PY E K YS ++++GL D N+ + R+ADA GV +V +
Sbjct: 69 VAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADASGVDAVIIPK 128
Query: 194 CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDW 253
S + S GA + + + + + L+ G+ IA T +A D+
Sbjct: 129 RRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGTEAN-NATDYRDLQA 187
Query: 254 SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302
IV+G+E +G+S D IPM G V+S N SVAA ++M+
Sbjct: 188 DMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMY 236
>sp|Q49V41|TRMHL_STAS1 Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP2224 PE=3 SV=1
Length = 249
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELW 219
S L+++GL D N+ + R+ADA GV V + S + S GA + + +
Sbjct: 95 STVLILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMRV 154
Query: 220 DAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLR 279
L+ GY I T ++ +MD P IV+G+E +G+S D
Sbjct: 155 TNLANTIETLKDNGYWIVGTE-AENSTDYREMDAGMPLGIVIGSEGQGMSRLVKEKCDFY 213
Query: 280 CSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
+IPM G V+S N SVAA ++M+ R
Sbjct: 214 INIPMVGHVNSLNASVAASLMMYEVFRKR 242
>sp|Q8EAG8|RLMB_SHEON 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Shewanella
oneidensis (strain MR-1) GN=rlmB PE=3 SV=1
Length = 246
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222
L+++G++D N+ A R+ADA GVQ + V +S V+ GA + + +
Sbjct: 100 LILDGVTDPHNLGACLRNADAAGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNL 159
Query: 223 RECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSI 282
L+ +G I T G +Y D P AI +G E +G+ + D SI
Sbjct: 160 ARTMRHLQEKGVWIVGT-AGEADCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSI 218
Query: 283 PMKGMVDSFNVSVAAGILMHHAVCDR 308
PM G V S NVSVA GI + AV R
Sbjct: 219 PMSGSVSSLNVSVATGICLFEAVRQR 244
>sp|Q88DE7|RLMB_PSEPK 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas
putida (strain KT2440) GN=rlmB PE=3 SV=1
Length = 248
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 1/157 (0%)
Query: 155 KNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWL 214
+ + + LV++G++D N+ A R+ADA G +V V S+ R V+ GA + +
Sbjct: 92 RTETPPLILVLDGVTDPHNLGACLRTADAAGATAVIVPKDKSATLTPVVRKVACGAAEVI 151
Query: 215 DIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALS 274
+ L+ RG + T G +Y D + P +++G E +G+
Sbjct: 152 PLVAVTNLARTLEKLQQRGLWVVGT-AGEAEQEIYQQDLTGPLVMIMGAEGKGMRRLTRE 210
Query: 275 LSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATR 311
D +PM G V S NVSVA G+ + AV R +
Sbjct: 211 HCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRQVK 247
>sp|P44906|RLMB_HAEIN 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rlmB PE=1 SV=1
Length = 246
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 6/191 (3%)
Query: 119 LDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATF 178
LD+ G+V+ V+A E + ++ N+ + LV++G++D N+ A
Sbjct: 58 LDKKADGEVHQGVIARVQAAK----ELNENDLDEILANKQNPLLLVLDGVTDPHNLGACL 113
Query: 179 RSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLD-IELWDAPRECFNVLRSRGYRIA 237
R+ADA G +V V S++ R V+ GA + + I + + R ++ ++ +
Sbjct: 114 RTADAAGAVAVIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVV 173
Query: 238 TTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAA 297
T G ++Y + P A+V+G E G+ D SIPM G V S NVSVA
Sbjct: 174 GT-AGEATETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232
Query: 298 GILMHHAVCDR 308
G+ + V R
Sbjct: 233 GVCLFEIVRQR 243
>sp|Q7A1Q9|TRMHL_STAAW Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MW2) GN=MW0487 PE=3 SV=1
Length = 248
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
Query: 134 VVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193
V ++PY + + + S L+++GL D N+ + R+ADA GV V +
Sbjct: 69 VAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPK 128
Query: 194 CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDW 253
S + S GA + + + + + L+ G+ +A T +A +++
Sbjct: 129 RRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEAN-NATDYRNLEA 187
Query: 254 SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
AIV+G+E +G+S D IPM G V+S N SVAA ++M+ R
Sbjct: 188 DMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKR 242
>sp|Q6GBV6|TRMHL_STAAS Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MSSA476) GN=SAS0489 PE=3 SV=1
Length = 248
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
Query: 134 VVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193
V ++PY + + + S L+++GL D N+ + R+ADA GV V +
Sbjct: 69 VAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPK 128
Query: 194 CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDW 253
S + S GA + + + + + L+ G+ +A T +A +++
Sbjct: 129 RRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEAN-NATDYRNLEA 187
Query: 254 SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
AIV+G+E +G+S D IPM G V+S N SVAA ++M+ R
Sbjct: 188 DMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKR 242
>sp|Q6GJD7|TRMHL_STAAR Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MRSA252) GN=SAR0535 PE=3 SV=1
Length = 248
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
Query: 134 VVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193
V ++PY + + + S L+++GL D N+ + R+ADA GV V +
Sbjct: 69 VAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPK 128
Query: 194 CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDW 253
S + S GA + + + + + L+ G+ +A T +A +++
Sbjct: 129 RRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEAN-NATDYRNLEA 187
Query: 254 SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
AIV+G+E +G+S D IPM G V+S N SVAA ++M+ R
Sbjct: 188 DMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKR 242
>sp|Q7A794|TRMHL_STAAN Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain N315) GN=SA0490 PE=1 SV=1
Length = 248
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
Query: 134 VVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193
V ++PY + + + S L+++GL D N+ + R+ADA GV V +
Sbjct: 69 VAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPK 128
Query: 194 CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDW 253
S + S GA + + + + + L+ G+ +A T +A +++
Sbjct: 129 RRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEAN-NATDYRNLEA 187
Query: 254 SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
AIV+G+E +G+S D IPM G V+S N SVAA ++M+ R
Sbjct: 188 DMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKR 242
>sp|Q99W72|TRMHL_STAAM Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=SAV0531 PE=1 SV=1
Length = 248
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
Query: 134 VVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193
V ++PY + + + S L+++GL D N+ + R+ADA GV V +
Sbjct: 69 VAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPK 128
Query: 194 CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDW 253
S + S GA + + + + + L+ G+ +A T +A +++
Sbjct: 129 RRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEAN-NATDYRNLEA 187
Query: 254 SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
AIV+G+E +G+S D IPM G V+S N SVAA ++M+ R
Sbjct: 188 DMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKR 242
>sp|Q7MYU6|RLMB_PHOLL 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=rlmB PE=3
SV=1
Length = 244
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 8/209 (3%)
Query: 102 DGVGSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSV 161
+ +G L+N++W LD G V+ ++ + P + + +++
Sbjct: 44 ESIGMTIQLANRQW---LDNQTEGAVH---QGIIAKVKPGRQYQEND-LPDLLAQVETPF 96
Query: 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDA 221
LV++G++D N+ A RSADA GV +V + S++ + V+ GA + + +
Sbjct: 97 LLVLDGVTDPHNLGACLRSADAAGVHAVIIPRDRSAQLNATAKKVACGAAESVPLIRVTN 156
Query: 222 PRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCS 281
+L+ + T G ++Y + P A+V+G E G+ D S
Sbjct: 157 LARTLRLLQEYNIWVVGT-AGEADHTLYQSKLTGPMALVMGAEGEGMRRLTREHCDELIS 215
Query: 282 IPMKGMVDSFNVSVAAGILMHHAVCDRAT 310
IPM G V S NVSVA G+ + AV R++
Sbjct: 216 IPMVGSVSSLNVSVATGVCLFEAVRQRSS 244
>sp|Q9JUU8|RLMB_NEIMA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rlmB PE=3 SV=2
Length = 250
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 127 VYLSSSEVVEALSPYLMEERKERFVNVVKNRSY-----------SVCLVVEGLSDFGNVS 175
VY + ++ + A+S + F++ KN + + L+++G++D N+
Sbjct: 52 VYFADADRLNAISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLG 111
Query: 176 ATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYR 235
A R+ADA+GV +V S+ V+ GA + + L+ G
Sbjct: 112 ACLRTADAMGVHAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIW 171
Query: 236 IATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSV 295
I T +G +A +Y D A V+GNE G+ D+ SIPM G V+S NVSV
Sbjct: 172 IIGTDMGGNA-DLYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSV 230
Query: 296 AAGILM 301
+AG+++
Sbjct: 231 SAGMVL 236
>sp|Q6D127|RLMB_ERWCT 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=rlmB PE=3 SV=1
Length = 244
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 1/157 (0%)
Query: 153 VVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEK 212
++ N L+++G++D N+ A R+AD GV +V V S++ + V+ GA +
Sbjct: 88 MLDNLEMPFLLILDGVTDPHNLGACLRNADGAGVHAVIVPRDRSAQLNATVKKVACGAAE 147
Query: 213 WLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEA 272
+ + +L+ R I T D ++Y + P A+V+G E G+
Sbjct: 148 TIPVISVTNLARTMRLLQERNIWIVGTAGEADH-TLYQSKLTGPLALVMGAEGEGMRRLT 206
Query: 273 LSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRA 309
D SIPM G V S NVSVA G+ + AV R
Sbjct: 207 REHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRG 243
>sp|Q9CJP3|RLMB_PASMU 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pasteurella
multocida (strain Pm70) GN=rlmB PE=3 SV=1
Length = 245
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 2/157 (1%)
Query: 153 VVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEK 212
+++N+S + LV++G++D N+ A R+ADA GV +V V S++ R V+ GA +
Sbjct: 88 LLQNQSNPLLLVLDGVTDPHNLGACLRTADAAGVCAVIVPKDKSAQLTAIARKVACGAAE 147
Query: 213 WLD-IELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE 271
+ I + + R + + + T G ++Y + A+V+G E G+
Sbjct: 148 VVPLIRVTNLARTLRELQQKHNIWVVGT-AGEATNTLYQTQLTGGLALVMGAEGEGMRRL 206
Query: 272 ALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
D SIPM G V S NVSVA G+ + V R
Sbjct: 207 TREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243
>sp|O51468|Y516_BORBU Uncharacterized tRNA/rRNA methyltransferase BB_0516 OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=BB_0516 PE=3 SV=1
Length = 228
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Query: 148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVS 207
E + K + + L+++ + D N A R+A+ + V S+K S
Sbjct: 66 ENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTS 125
Query: 208 MGAEKWLDIELWDAPRECFNVLRSRGYRIATTHV-GMDAISVYDMDWSCPTAIVVGNENR 266
GA +++ N+L++ G+ I T + G D + D A+++GNE +
Sbjct: 126 SGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKI--ALILGNEGK 183
Query: 267 GVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301
GV SD IP G +DS NVSV+ GIL+
Sbjct: 184 GVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILI 218
>sp|Q9AGT0|TRMHL_STAAE Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain Newman) GN=NWMN_0494 PE=3 SV=1
Length = 248
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 1/175 (0%)
Query: 134 VVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193
V ++PY + + + L+++GL D N+ + R+ADA GV V +
Sbjct: 69 VAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADATGVDGVIIPK 128
Query: 194 CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDW 253
S + S GA + + + + + L+ G+ +A T +A +++
Sbjct: 129 RRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEAN-NATDYRNLEA 187
Query: 254 SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
AIV+G+E +G+S D IPM G V+S N SVAA ++M+ R
Sbjct: 188 DMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKR 242
>sp|Q5HIE3|TRMHL_STAAC Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain COL) GN=SACOL0578 PE=3 SV=1
Length = 248
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 1/175 (0%)
Query: 134 VVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193
V ++PY + + + L+++GL D N+ + R+ADA GV V +
Sbjct: 69 VAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADATGVDGVIIPK 128
Query: 194 CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDW 253
S + S GA + + + + + L+ G+ +A T +A +++
Sbjct: 129 RRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEAN-NATDYRNLEA 187
Query: 254 SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
AIV+G+E +G+S D IPM G V+S N SVAA ++M+ R
Sbjct: 188 DMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKR 242
>sp|Q06753|YACO_BACSU Putative TrmH family tRNA/rRNA methyltransferase YacO OS=Bacillus
subtilis (strain 168) GN=yacO PE=3 SV=2
Length = 249
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 8/195 (4%)
Query: 118 YLDRYKCGDVYLSSSE-VVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSA 176
Y+ R K + + VV ++ Y E + + + L+++ L D N+ +
Sbjct: 54 YVPRKKLDQMVTGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGS 113
Query: 177 TFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRI 236
R+ADA+G + + + S GA + + + ++ RG +
Sbjct: 114 IMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWV 173
Query: 237 ATTHVGMDAISVYD---MDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNV 293
VG DA + D MD + P A+V+G+E +G+ D +PM G V S N
Sbjct: 174 ----VGTDASAREDFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNA 229
Query: 294 SVAAGILMHHAVCDR 308
SVAAG+LM+ R
Sbjct: 230 SVAAGLLMYEVYRKR 244
>sp|Q87L11|RLMB_VIBPA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rlmB PE=3 SV=1
Length = 247
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 1/157 (0%)
Query: 152 NVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAE 211
+++ + LV++G++D N+ A R+ADA GV ++ V S+ V+ GA
Sbjct: 88 DILAQHETPLLLVLDGVTDPHNLGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAA 147
Query: 212 KWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE 271
+ + + L+ +G T G +Y + P AIV+G E G+
Sbjct: 148 EVVPLIRVTNLARTMRTLQEQGIWFVGT-AGEATHDIYQAKLTGPLAIVMGAEGDGMRRL 206
Query: 272 ALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
D IPM G V S NVSVA+GI + AV R
Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQR 243
>sp|Q8ZIV4|RLMB_YERPE 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Yersinia
pestis GN=rlmB PE=3 SV=1
Length = 246
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222
LV++G++D N+ A RSADA GV +V V S++ + V+ GA + + +
Sbjct: 98 LVLDGVTDPHNLGACLRSADAAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNL 157
Query: 223 RECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSI 282
VL+ I T G ++Y + P A+V+G E G+ D SI
Sbjct: 158 ARTLRVLQEHNVWIVGT-AGEADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISI 216
Query: 283 PMKGMVDSFNVSVAAGILMHHAVCDRATR 311
PM G V S NVSVA G+ + V R +
Sbjct: 217 PMAGSVSSLNVSVATGVCLFEVVRQRGLK 245
>sp|P94538|YSGA_BACSU Uncharacterized tRNA/rRNA methyltransferase YsgA OS=Bacillus
subtilis (strain 168) GN=ysgA PE=3 SV=2
Length = 248
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Query: 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDA 221
L+++ + D GN+ R+ADA G+ +V + + + + G+ + + +
Sbjct: 106 VLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPVVRRNL 165
Query: 222 PRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCS 281
P + L++ G ++ T + + ++ S A++VGNE GV L +DL
Sbjct: 166 PS-YVDELKAEGVKVYGTAL-QNGAPYQEIPQSESFALIVGNEGAGVDAALLEKTDLNLY 223
Query: 282 IPMKGMVDSFNVSVAAGILMHH 303
+P+ G +S NV+VAA IL++H
Sbjct: 224 VPLYGQAESLNVAVAAAILVYH 245
>sp|Q6LM40|RLMB_PHOPR 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Photobacterium
profundum GN=rlmB PE=3 SV=1
Length = 245
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 1/157 (0%)
Query: 152 NVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAE 211
+++ + L+++G++D N+ A R+ADA G +V + +++ V+ GA
Sbjct: 88 TILEGSENPLLLILDGVTDPHNLGACLRNADAAGAVAVIIPKDRAAQLTATASKVACGAA 147
Query: 212 KWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE 271
+ + + L+ +G I T G +Y + P AIV+G E G+
Sbjct: 148 EVMPLVRVTNLARTMRALQDKGVWIVGT-AGEATHDIYHSKLTGPLAIVMGAEGEGMRRL 206
Query: 272 ALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
D IPM G V S NVSVA GI + AV R
Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243
>sp|P74261|Y1673_SYNY3 Uncharacterized tRNA/rRNA methyltransferase slr1673
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr1673 PE=3 SV=1
Length = 274
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 9/146 (6%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHV----VSCDSSKRYRENRHVSMGAEKWLDIEL 218
LV+E L D GN+ R+A A GV+ + + V S K R S G+ L +
Sbjct: 123 LVLERLQDPGNLGTILRTAAATGVEGIWLTADCVDPTSPKVLRS----SAGSSLLLPQQQ 178
Query: 219 WDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDL 278
+ ++G ++ T V +++++D+ PT ++ G+E +G+S L L+
Sbjct: 179 LQSLPPLLEKFHTQGLQLIAT-VPQATQTLWEIDFQRPTIVIFGSEGQGLSAPVLELTTH 237
Query: 279 RCSIPMKGMVDSFNVSVAAGILMHHA 304
+ +IP V+S NV++A G++++ A
Sbjct: 238 QVAIPQAPQVESLNVAIAVGVMLYEA 263
>sp|P25270|MRM1_YEAST rRNA methyltransferase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MRM1 PE=1 SV=2
Length = 412
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 23/168 (13%)
Query: 157 RSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDI 216
+ + + L ++ ++D N+ A RSA LGV + + + S S GA + L I
Sbjct: 238 KKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPI 297
Query: 217 ELWDAPRECFNVLRSRG-YRIATTHVGM---------DAISVYDMDWSC---PTAIVVGN 263
D P E F + G + T+H+ IS++D++ C P +VVGN
Sbjct: 298 FYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGN 357
Query: 264 ENRGVSDEALSLSDLRCSIPMKG----------MVDSFNVSVAAGILM 301
E++GV SD IP G +VDS NVSVA +L+
Sbjct: 358 ESQGVRTNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405
>sp|Q7VP36|RLMB_HAEDU 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rlmB PE=3 SV=1
Length = 246
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Query: 153 VVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEK 212
+++++S + L+++G++D N+ A R+ADA GV +V V S+ R V+ GA +
Sbjct: 88 LLQHKSNPLLLILDGVTDPHNLGACLRTADAAGVDAVIVPKDKSATLTAIARKVACGAAE 147
Query: 213 WLD-IELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE 271
+ I + + R + I T G +Y + A+V+G E G+
Sbjct: 148 AMPLIRVTNLARTMRELQDKHQIWIVGT-AGEATTDIYTSQLTGAIALVMGAEGDGMRRL 206
Query: 272 ALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATR 311
D SIPM G V S NVSVA G+ + V + +R
Sbjct: 207 TREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQKLSR 246
>sp|Q83CW6|RLMB_COXBU 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=rlmB
PE=3 SV=1
Length = 250
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Query: 155 KNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWL 214
K + ++ L+++G+ D N+ A RSA+A GV++V + R V+ GA +
Sbjct: 92 KRETPALLLILDGVKDPHNLGACLRSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMT 151
Query: 215 DIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALS 274
+ L+ G I T V + + + ++D + AIV+G+E G+
Sbjct: 152 PFIRVTNLSRTIDWLQKEGVWIVGTAVEAETL-IQEIDLTGDIAIVLGSEGAGLRRLTKE 210
Query: 275 LSDLRCSIPMKGMVDSFNVSVAAGILMHH 303
D IP++G V+S NVSVA GI ++
Sbjct: 211 RCDFLAQIPLRGSVESLNVSVACGICLYE 239
>sp|Q7MH13|RLMB_VIBVY 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio
vulnificus (strain YJ016) GN=rlmB PE=3 SV=1
Length = 247
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 1/157 (0%)
Query: 152 NVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAE 211
+++ + + L+++G++D N+ A R+ADA GV +V V S+ V+ GA
Sbjct: 88 DILAKHASPLLLILDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAA 147
Query: 212 KWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE 271
+ + + L+ +G I T G +Y + AIV+G E G+
Sbjct: 148 ETVPLVRVTNLARTMRHLQEQGIWIVGT-AGEATHDIYQAKLTGSLAIVMGAEGDGMRRL 206
Query: 272 ALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
D IPM G V S NVSVA+GI + AV R
Sbjct: 207 TRETCDDLIKIPMAGAVSSLNVSVASGICLFEAVRQR 243
>sp|Q8DCT8|RLMB_VIBVU 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio
vulnificus (strain CMCP6) GN=rlmB PE=3 SV=1
Length = 247
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 1/157 (0%)
Query: 152 NVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAE 211
+++ + + L+++G++D N+ A R+ADA GV +V V S+ V+ GA
Sbjct: 88 DILAKHASPLLLILDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAA 147
Query: 212 KWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE 271
+ + + L+ +G I T G +Y + AIV+G E G+
Sbjct: 148 ETVPLVRVTNLARTMRHLQEQGIWIVGT-AGEATHDIYQAKLTGSLAIVMGAEGDGMRRL 206
Query: 272 ALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
D IPM G V S NVSVA+GI + AV R
Sbjct: 207 TRETCDDLIKIPMAGAVSSLNVSVASGICLFEAVRQR 243
>sp|P63180|RLMB_SHIFL 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Shigella
flexneri GN=rlmB PE=3 SV=1
Length = 243
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 8/205 (3%)
Query: 105 GSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLV 164
G + L+N++ YLD G V+ V+ Y ++ +++ + L+
Sbjct: 47 GVVIQLANRQ---YLDEKSDGAVHQGIIARVKPGRQY----QENDLPDLIASLDQPFLLI 99
Query: 165 VEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRE 224
++G++D N+ A RSADA GV +V V S++ + V+ GA + + +
Sbjct: 100 LDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLAR 159
Query: 225 CFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPM 284
+L+ I T G ++Y + A+V+G E G+ D SIPM
Sbjct: 160 TMRMLQEENIWIVGT-AGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPM 218
Query: 285 KGMVDSFNVSVAAGILMHHAVCDRA 309
G V S NVSVA GI + AV R+
Sbjct: 219 AGSVSSLNVSVATGICLFEAVRQRS 243
>sp|P63177|RLMB_ECOLI 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Escherichia
coli (strain K12) GN=rlmB PE=1 SV=1
Length = 243
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 8/205 (3%)
Query: 105 GSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLV 164
G + L+N++ YLD G V+ V+ Y ++ +++ + L+
Sbjct: 47 GVVIQLANRQ---YLDEKSDGAVHQGIIARVKPGRQY----QENDLPDLIASLDQPFLLI 99
Query: 165 VEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRE 224
++G++D N+ A RSADA GV +V V S++ + V+ GA + + +
Sbjct: 100 LDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLAR 159
Query: 225 CFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPM 284
+L+ I T G ++Y + A+V+G E G+ D SIPM
Sbjct: 160 TMRMLQEENIWIVGT-AGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPM 218
Query: 285 KGMVDSFNVSVAAGILMHHAVCDRA 309
G V S NVSVA GI + AV R+
Sbjct: 219 AGSVSSLNVSVATGICLFEAVRQRS 243
>sp|P63178|RLMB_ECOL6 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rlmB
PE=3 SV=1
Length = 243
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 8/205 (3%)
Query: 105 GSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLV 164
G + L+N++ YLD G V+ V+ Y ++ +++ + L+
Sbjct: 47 GVVIQLANRQ---YLDEKSDGAVHQGIIARVKPGRQY----QENDLPDLIASLDQPFLLI 99
Query: 165 VEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRE 224
++G++D N+ A RSADA GV +V V S++ + V+ GA + + +
Sbjct: 100 LDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLAR 159
Query: 225 CFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPM 284
+L+ I T G ++Y + A+V+G E G+ D SIPM
Sbjct: 160 TMRMLQEENIWIVGT-AGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPM 218
Query: 285 KGMVDSFNVSVAAGILMHHAVCDRA 309
G V S NVSVA GI + AV R+
Sbjct: 219 AGSVSSLNVSVATGICLFEAVRQRS 243
>sp|P63179|RLMB_ECO57 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Escherichia
coli O157:H7 GN=rlmB PE=3 SV=1
Length = 243
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 8/205 (3%)
Query: 105 GSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLV 164
G + L+N++ YLD G V+ V+ Y ++ +++ + L+
Sbjct: 47 GVVIQLANRQ---YLDEKSDGAVHQGIIARVKPGRQY----QENDLPDLIASLDQPFLLI 99
Query: 165 VEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRE 224
++G++D N+ A RSADA GV +V V S++ + V+ GA + + +
Sbjct: 100 LDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLAR 159
Query: 225 CFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPM 284
+L+ I T G ++Y + A+V+G E G+ D SIPM
Sbjct: 160 TMRMLQEENIWIVGT-AGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPM 218
Query: 285 KGMVDSFNVSVAAGILMHHAVCDRA 309
G V S NVSVA GI + AV R+
Sbjct: 219 AGSVSSLNVSVATGICLFEAVRQRS 243
>sp|Q8ZKA2|RLMB_SALTY 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rlmB PE=3 SV=1
Length = 243
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 8/204 (3%)
Query: 105 GSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLV 164
G + L+N++ YLD G V+ V+ Y ++ +++ L+
Sbjct: 47 GVVIQLANRQ---YLDEKSDGAVHQGIIARVKPGRQY----QENDLPDLIALHDRPFLLI 99
Query: 165 VEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRE 224
++G++D N+ A RSADA GV +V V S++ + V+ GA + + +
Sbjct: 100 LDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLAR 159
Query: 225 CFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPM 284
+L+ I T G ++Y A+V+G E G+ D SIPM
Sbjct: 160 TMRMLQEENIWIVGT-AGEADHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPM 218
Query: 285 KGMVDSFNVSVAAGILMHHAVCDR 308
G V S NVSVA GI + AV R
Sbjct: 219 AGSVSSLNVSVATGICLFEAVRQR 242
>sp|Q8Z182|RLMB_SALTI 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Salmonella
typhi GN=rlmB PE=3 SV=1
Length = 243
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 8/204 (3%)
Query: 105 GSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLV 164
G + L+N++ YLD G V+ V+ Y ++ +++ L+
Sbjct: 47 GVVIQLANRQ---YLDEKSDGAVHQGIIARVKPGRQY----QENDLPDLIALHDRPFLLI 99
Query: 165 VEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRE 224
++G++D N+ A RSADA GV +V V S++ + V+ GA + + +
Sbjct: 100 LDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLAR 159
Query: 225 CFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPM 284
+L+ I T G ++Y A+V+G E G+ D SIPM
Sbjct: 160 TMRMLQEENIWIVGT-AGEADHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPM 218
Query: 285 KGMVDSFNVSVAAGILMHHAVCDR 308
G V S NVSVA GI + AV R
Sbjct: 219 AGSVSSLNVSVATGICLFEAVRQR 242
>sp|B2HJ20|Y5079_MYCMM Uncharacterized tRNA/rRNA methyltransferase MMAR_5079
OS=Mycobacterium marinum (strain ATCC BAA-535 / M)
GN=MMAR_5079 PE=3 SV=1
Length = 310
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 7/154 (4%)
Query: 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELW 219
++ + ++ +SD N+ A RS A G V + S+ S GA + +
Sbjct: 161 ALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARA 220
Query: 220 DAPRECFNVLRSRGYRIATTHVGMDA---ISVYDMDWSCPTAIVVGNENRGVSDEALSLS 276
RG R+ VG+DA ++ D+D S P +VVG+E +G+S
Sbjct: 221 TNLTRALKDWADRGVRV----VGLDAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTC 276
Query: 277 DLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRAT 310
D S+PM G +S N SVAAG+++ R T
Sbjct: 277 DEVVSVPMAGPTESLNASVAAGVVLAEIARQRRT 310
>sp|A0PV26|Y4155_MYCUA Uncharacterized tRNA/rRNA methyltransferase MUL_4155
OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_4155
PE=3 SV=1
Length = 310
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 7/154 (4%)
Query: 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELW 219
++ + ++ +SD N+ A RS A G V + S+ S GA + +
Sbjct: 161 ALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARA 220
Query: 220 DAPRECFNVLRSRGYRIATTHVGMDA---ISVYDMDWSCPTAIVVGNENRGVSDEALSLS 276
RG R+ VG+DA ++ D+D S P +VVG+E +G+S
Sbjct: 221 TNLTRALKDWADRGVRV----VGLDAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTC 276
Query: 277 DLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRAT 310
D S+PM G +S N SVAAG+++ R T
Sbjct: 277 DEVVSVPMAGPTESLNASVAAGVVLAEIARQRRT 310
>sp|Q6IN84|MRM1_HUMAN rRNA methyltransferase 1, mitochondrial OS=Homo sapiens GN=MRM1
PE=1 SV=1
Length = 353
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 17/161 (10%)
Query: 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222
LV++G+ D N A RSA LGV V +S S GA + +D+ D
Sbjct: 148 LVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDL 207
Query: 223 RECFNVLRSRGYRIATTHVG-----------MDAISVYDMDWSCPTAIVVGNENRGVSDE 271
+G+ +A T VG + +S + W PT +V+GNE G+S E
Sbjct: 208 TGFLQTKAQQGWLVAGT-VGCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQE 266
Query: 272 ALSLSDLRCSI-PMKGM---VDSFNVSVAAGILMHHAVCDR 308
+ L +I P + + ++S NVSVAAGIL+ H++C +
Sbjct: 267 VQASCQLLLTILPRRQLPPGLESLNVSVAAGILL-HSICSQ 306
>sp|Q8Y016|RLMB_RALSO 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Ralstonia
solanacearum (strain GMI1000) GN=rlmB PE=3 SV=1
Length = 249
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLD-IELW 219
+ LV++G++D N+ A R ADA G +V S V+ GA + + I +
Sbjct: 97 LLLVLDGVTDPHNLGACLRVADAAGAHAVIAPKDRSVGINTTVAKVASGAAETVPYITVT 156
Query: 220 DAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLR 279
+ R L+ RG + T + +Y D+ P A+V+G E G+ D
Sbjct: 157 NLAR-TLRELQQRGVWVIGTADEAEQ-DLYRADFKGPIALVMGAEGEGMRRLTRETCDTL 214
Query: 280 CSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
SIPM G V+S NVSVA+G+ + AV R
Sbjct: 215 VSIPMAGSVESLNVSVASGVCLFEAVRQR 243
>sp|Q9KNY2|RLMB_VIBCH 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=rlmB PE=3 SV=1
Length = 247
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 1/157 (0%)
Query: 152 NVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAE 211
+++ + LV++G++D N+ A R+ADA GV +V V S+ V+ GA
Sbjct: 88 DILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAA 147
Query: 212 KWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE 271
+ + + L+ +G T G +Y + AIV+G E G+
Sbjct: 148 ETVPLVRVTNLARTMRALQEKGVWFVGT-AGEATHDIYQSKLTGSLAIVMGAEGDGMRRL 206
Query: 272 ALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308
D IPM G V S NVSVA G+ + AV R
Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQR 243
>sp|P59968|Y905_MYCBO Uncharacterized tRNA/rRNA methyltransferase Mb0905 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb0905 PE=3
SV=1
Length = 288
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 164 VVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLD-IELWDAP 222
V+EG++D N+ + FR+A L V +V + + YR VSMG + D P
Sbjct: 134 VLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWP 193
Query: 223 RECFNVLRSRGYRI-ATTHVG-----MDAISVYDMDWSCPTAIVVGNENRGVSDEALSLS 276
E L+ G+R+ A T G +AI+ + A++VG E G++ AL +S
Sbjct: 194 TELMT-LKESGFRLLAMTPHGNACKLPEAIAAVSHER---IALLVGAEGPGLTAAALRIS 249
Query: 277 DLRCSIPMKGMVDSFNVSVAAGILMH 302
D+R IPM DS NV+ AA + +
Sbjct: 250 DVRVRIPMSRGTDSLNVATAAALAFY 275
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,884,198
Number of Sequences: 539616
Number of extensions: 4988066
Number of successful extensions: 12929
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 12786
Number of HSP's gapped (non-prelim): 119
length of query: 358
length of database: 191,569,459
effective HSP length: 119
effective length of query: 239
effective length of database: 127,355,155
effective search space: 30437882045
effective search space used: 30437882045
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)