Query 018308
Match_columns 358
No_of_seqs 306 out of 1902
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:53:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11081 tRNA guanosine-2'-O-m 100.0 3.4E-49 7.3E-54 369.7 23.4 201 143-352 2-204 (229)
2 COG0566 SpoU rRNA methylases [ 100.0 1.4E-48 3E-53 372.1 12.0 234 69-309 21-258 (260)
3 PRK11181 23S rRNA (guanosine-2 100.0 1.4E-47 3.1E-52 362.0 14.1 235 72-309 5-243 (244)
4 PRK10864 putative methyltransf 100.0 6.2E-47 1.3E-51 372.3 14.2 234 68-309 107-345 (346)
5 TIGR00186 rRNA_methyl_3 rRNA m 100.0 1.5E-44 3.2E-49 340.0 14.6 232 71-308 3-237 (237)
6 PF00588 SpoU_methylase: SpoU 100.0 2E-38 4.3E-43 274.9 13.3 141 160-302 1-142 (142)
7 TIGR00185 rRNA_methyl_2 rRNA m 100.0 6.5E-38 1.4E-42 276.9 14.7 148 161-312 2-151 (153)
8 PRK10358 putative rRNA methyla 100.0 4.3E-35 9.3E-40 260.2 17.4 148 161-312 2-152 (157)
9 TIGR00050 rRNA_methyl_1 RNA me 100.0 2E-32 4.4E-37 257.3 18.2 164 161-331 4-182 (233)
10 PRK15114 tRNA (cytidine/uridin 100.0 4.6E-31 9.9E-36 249.8 18.9 167 160-331 4-191 (245)
11 PRK10433 putative RNA methyltr 100.0 1.9E-29 4.2E-34 236.2 19.3 165 161-331 3-181 (228)
12 KOG0838 RNA Methylase, SpoU fa 100.0 3.9E-29 8.4E-34 234.2 11.3 209 69-307 42-270 (271)
13 KOG2506 SpoU rRNA Methylase fa 99.9 1.7E-26 3.7E-31 221.2 9.1 147 157-307 214-370 (371)
14 COG0565 LasT rRNA methylase [T 99.9 1.7E-24 3.6E-29 202.9 15.1 165 160-331 4-186 (242)
15 COG0219 CspR Predicted rRNA me 99.9 2E-24 4.3E-29 189.2 14.5 148 161-311 3-152 (155)
16 KOG0839 RNA Methylase, SpoU fa 99.8 2.1E-20 4.5E-25 200.3 9.7 152 157-309 1323-1476(1477)
17 PRK03958 tRNA 2'-O-methylase; 98.4 3.7E-06 8E-11 76.2 11.3 121 176-306 21-149 (176)
18 PF09936 Methyltrn_RNA_4: SAM- 98.2 6.8E-06 1.5E-10 74.7 9.2 129 174-304 30-182 (185)
19 COG4080 SpoU rRNA Methylase fa 97.8 0.00014 3.1E-09 63.3 8.6 134 160-305 2-144 (147)
20 COG1303 Uncharacterized protei 96.2 0.027 5.9E-07 50.4 8.6 119 177-306 23-148 (179)
21 PF12105 SpoU_methylas_C: SpoU 96.1 0.007 1.5E-07 45.3 3.8 40 306-352 1-40 (57)
22 PF08032 SpoU_sub_bind: RNA 2' 95.6 0.00027 5.9E-09 54.4 -6.0 60 72-143 2-62 (76)
23 PRK12703 tRNA 2'-O-methylase; 95.4 0.13 2.9E-06 51.5 10.5 116 177-306 21-143 (339)
24 PF09895 DUF2122: RecB-family 94.7 0.19 4.1E-06 42.3 8.0 84 215-304 21-106 (106)
25 PF01994 Trm56: tRNA ribose 2' 91.0 0.55 1.2E-05 40.2 5.5 88 209-306 2-94 (120)
26 COG4752 Uncharacterized protei 90.8 0.36 7.8E-06 43.1 4.4 132 173-305 30-184 (190)
27 KOG0838 RNA Methylase, SpoU fa 88.3 0.05 1.1E-06 52.3 -3.1 51 253-304 136-190 (271)
28 PF14419 SPOUT_MTase_2: AF2226 85.5 2.5 5.4E-05 38.2 6.2 123 176-305 22-170 (173)
29 PRK02135 hypothetical protein; 85.2 2.4 5.2E-05 39.6 6.3 80 219-306 113-196 (201)
30 PF04013 Methyltrn_RNA_2: Puta 80.4 8.4 0.00018 35.9 7.9 81 219-307 112-197 (199)
31 PF04452 Methyltrans_RNA: RNA 79.9 9.6 0.00021 35.5 8.3 113 162-278 63-197 (225)
32 COG1385 Uncharacterized protei 72.6 16 0.00035 35.0 7.8 124 161-286 79-224 (246)
33 PRK11713 16S ribosomal RNA met 70.5 39 0.00085 31.7 9.8 107 163-277 77-199 (234)
34 TIGR00046 RNA methyltransferas 67.4 55 0.0012 30.9 10.1 120 162-284 78-215 (240)
35 COG2242 CobL Precorrin-6B meth 51.6 73 0.0016 29.5 7.6 101 160-263 59-185 (187)
36 PF13380 CoA_binding_2: CoA bi 45.0 66 0.0014 26.9 5.9 52 159-238 56-107 (116)
37 TIGR00246 tRNA_RlmH_YbeA rRNA 44.0 45 0.00098 29.7 4.9 66 234-306 66-141 (153)
38 PF02590 SPOUT_MTase: Predicte 43.6 22 0.00048 31.7 2.9 68 232-306 66-144 (155)
39 PF04407 DUF531: Protein of un 42.3 43 0.00093 30.4 4.5 48 254-303 119-166 (173)
40 PF07047 OPA3: Optic atrophy 3 39.9 69 0.0015 27.7 5.4 20 291-310 83-102 (134)
41 COG1901 Uncharacterized conser 38.7 3.2E+02 0.007 25.5 9.6 80 220-307 112-195 (197)
42 PRK00103 rRNA large subunit me 38.4 1.6E+02 0.0035 26.3 7.6 67 233-306 67-144 (157)
43 PF13407 Peripla_BP_4: Peripla 37.1 1.7E+02 0.0037 26.4 7.9 45 149-193 19-63 (257)
44 PF09837 DUF2064: Uncharacteri 36.9 32 0.00069 29.2 2.8 78 169-254 40-121 (122)
45 COG3426 Butyrate kinase [Energ 36.0 32 0.00069 34.2 2.9 38 168-206 103-142 (358)
46 COG2106 Uncharacterized conser 35.5 39 0.00084 33.1 3.4 25 172-196 26-50 (272)
47 TIGR01163 rpe ribulose-phospha 31.0 1.9E+02 0.004 25.9 7.0 73 169-242 8-88 (210)
48 cd04906 ACT_ThrD-I_1 First of 31.0 2.5E+02 0.0055 21.8 8.0 66 164-241 5-74 (85)
49 PRK04171 ribosome biogenesis p 30.6 1.7E+02 0.0036 27.9 6.6 86 211-305 127-216 (222)
50 cd01423 MGS_CPS_I_III Methylgl 28.7 1.3E+02 0.0027 24.8 5.0 66 220-287 13-83 (116)
51 cd04909 ACT_PDH-BS C-terminal 27.3 2.4E+02 0.0053 20.4 6.6 66 163-236 4-69 (69)
52 PRK03094 hypothetical protein; 26.8 1.4E+02 0.0031 23.9 4.7 23 219-241 7-29 (80)
53 COG1576 Uncharacterized conser 26.6 1.1E+02 0.0024 27.6 4.4 50 232-282 66-123 (155)
54 PF03698 UPF0180: Uncharacteri 25.6 1.1E+02 0.0025 24.4 3.9 23 220-242 8-30 (80)
55 COG4678 Muramidase (phage lamb 25.2 2.1E+02 0.0046 26.2 6.0 72 255-334 53-126 (180)
56 cd04882 ACT_Bt0572_2 C-termina 23.8 2.6E+02 0.0057 19.6 6.6 59 168-237 7-65 (65)
57 PF02598 Methyltrn_RNA_3: Puta 22.7 71 0.0015 31.4 2.8 21 174-194 24-44 (291)
58 COG0826 Collagenase and relate 22.5 5E+02 0.011 26.2 8.8 87 153-242 57-146 (347)
59 PRK02922 glycogen synthesis pr 21.0 1.5E+02 0.0033 23.0 3.6 36 295-331 15-50 (67)
60 TIGR00288 conserved hypothetic 20.4 97 0.0021 28.0 2.9 31 252-283 126-156 (160)
No 1
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=100.00 E-value=3.4e-49 Score=369.67 Aligned_cols=201 Identities=34% Similarity=0.482 Sum_probs=187.8
Q ss_pred chhhHHHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCCh
Q 018308 143 MEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222 (358)
Q Consensus 143 ~~~r~~~i~~v~~~r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl 222 (358)
+++|.++|++++++|+.+++||||+|+||||+|||+|||+|||++.||++.+.. .+....++|+|+.+|+++..+.|+
T Consensus 2 ~~~r~~ri~~~l~~r~~~l~vvLd~V~~p~NlGAIiRta~AfGv~~V~~v~~~~--~~~~~~~~s~Ga~~wv~i~~~~~~ 79 (229)
T PRK11081 2 NPERYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGS--RMRTMGSTAAGSNSWVQVKTHRTI 79 (229)
T ss_pred CchhHHhHHHHHhcCCCCeEEEEeCCCCcchHHHHHHHHHHhCCCeEEEecCCC--ccchhhhhcCCchheEEEEEeCCH
Confidence 467888999999999999999999999999999999999999999999886542 234567899999999999999999
Q ss_pred HHHHHHHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHH
Q 018308 223 RECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302 (358)
Q Consensus 223 ~~~l~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLy 302 (358)
.++++.|+++||+|++++...++.++.++++++|+|||||||+.|||+++++.||..|+|||.|+++|||||||+||+||
T Consensus 80 ~~~i~~lk~~g~~i~at~~~~~a~~l~~~d~~~p~alV~GnE~~GlS~e~l~~~D~~v~IPM~G~v~SLNVSvAaaIiLy 159 (229)
T PRK11081 80 GDAVAHLKGQGMQILATHLSDTAVDFREIDYTRPTCILMGQEKTGISQEALALADQDIIIPMIGMVQSLNVSVASALILY 159 (229)
T ss_pred HHHHHHHHhCCCEEEEEeCCCCCccHhHhcccCCeEEEECCCCCCCCHHHHhcCCCEEEEeCCCCCCceeHHHHHHHHHH
Confidence 99999999999999999987777899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccC--CCCCCCHHHHHHHHHHHHHhhcCchHHHHHHHHHhccc
Q 018308 303 HAVCDRATRLVG--CNGDLTSEEKQILLAEFSLRHSKSAISIVHEYAKRKET 352 (358)
Q Consensus 303 e~~rqr~~~~~~--~~~~Ls~eE~~~l~~~~~~r~~~~~~~i~~~~~~~~~~ 352 (358)
|+.|||..++++ .++.|+++|++.++++|. .+++++++++++.
T Consensus 160 E~~Rqr~~~g~y~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 204 (229)
T PRK11081 160 EAQRQRQNAGMYLRENSMLPEEEQQRLLFEGG-------YPVLAKVAKRKGL 204 (229)
T ss_pred HHHHhhccCCCcCcCCCCCCHHHHHHHHHhhc-------CHHHHHHHHHcCC
Confidence 999999999988 789999999999999995 8899999999873
No 2
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-48 Score=372.10 Aligned_cols=234 Identities=23% Similarity=0.259 Sum_probs=190.0
Q ss_pred CCCCCcHHHHHHhHcCCcchhhhhhcccccccCCCcchhhhhh-ccCCCCccccccCCC--eeeCcHHHHHhcCCCcchh
Q 018308 69 ENDTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLS-NKRWFPYLDRYKCGD--VYLSSSEVVEALSPYLMEE 145 (358)
Q Consensus 69 ~~~~~g~~av~all~~p~~I~rL~~~~~~~~~~~~~~~~~~LA-~~~~~~~~~~~~~~~--~~~~~q~v~~~l~~~~~~~ 145 (358)
++..||.|+|++++.+...|.++|+++++.. ++. +.+.+++ .+..+.++++..++. ....|||+++.+.+.....
T Consensus 21 ~~~~~G~~~v~~al~~~~~i~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~v~~~~l~~~~~~~~hqGi~a~~~~~~~~~ 98 (260)
T COG0566 21 EFLIEGEHAVLEALASGPKIVRILVTEGRLP-RFE-ELLALAAAKGIPVYVVSEAILDKLSGTENHQGIVAVVKKRRYPL 98 (260)
T ss_pred cEEEeeHHHHHHHHhcCCCceEEEEecccch-hHH-HHHHHHHhcCCeEEEECHHHHHHHhCCCCCCeEEEEEecccccc
Confidence 3678999999999955559999999998873 455 3444443 223333455554544 3467888888887665432
Q ss_pred hHHHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCC-hHH
Q 018308 146 RKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDA-PRE 224 (358)
Q Consensus 146 r~~~i~~v~~~r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~n-l~~ 224 (358)
..+.... ...+++|+||+|+||||+|||+|||+|||+++||+..+++++.+.++.|+|+|+.+++|+.++.| ...
T Consensus 99 ~~~~~~~----~~~~l~lvLd~V~DP~NlGaIiRtA~a~Gv~~Vi~~~~~~~~~~~~v~r~s~Ga~~~vp~~~~~n~~~~ 174 (260)
T COG0566 99 LDDLLDA----EAQPLLLVLDGVTDPHNLGAIIRTADAFGVDGVILPKRRADPLNPKVIRASAGAAFHVPVIRVTNLART 174 (260)
T ss_pred hhhhhhc----ccCCEEEEEecCcCCcchhhHHhhHHHhCCCEEEECCCccCCccceeEEecCChheeceeEEEeccHHH
Confidence 1111111 25689999999999999999999999999999998877776666789999999999999999885 555
Q ss_pred HHHHHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHH
Q 018308 225 CFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHA 304 (358)
Q Consensus 225 ~l~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~ 304 (358)
+++.+++.|||++||+.++ +.++++.++++|+|||||||+.|||+++++.||.+|+|||.|.++|||||||+||+|||+
T Consensus 175 ~~~~~~~~G~~v~~t~~~~-~~~~~~~~~~~~~aLvlG~Eg~Gls~~~~~~~D~~v~IPm~G~v~SLNVsvAagI~Lye~ 253 (260)
T COG0566 175 LLELLKEAGFWVVATSLDG-EVDLYETDLPKKTALVLGNEGEGLSRLLLEHADQLVRIPMAGKVESLNVSVAAGILLYEA 253 (260)
T ss_pred HHHHHHHcCeEEEEECCCC-CcchhhccccCCEEEEECCCCCCcCHHHHhhCCEEEEecCCCCcchhHHHHHHHHHHHHH
Confidence 5666666999999999987 688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q 018308 305 VCDRA 309 (358)
Q Consensus 305 ~rqr~ 309 (358)
.|||.
T Consensus 254 ~rq~~ 258 (260)
T COG0566 254 RRQRR 258 (260)
T ss_pred HHhhc
Confidence 99885
No 3
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=100.00 E-value=1.4e-47 Score=361.95 Aligned_cols=235 Identities=23% Similarity=0.272 Sum_probs=190.8
Q ss_pred CCcHHHHHHhH-cCCcchhhhhhcccccccCCCcchhhhhh-ccCCCCccccccCCC--eeeCcHHHHHhcCCCcchhhH
Q 018308 72 TPSKDNVEKLL-TNPDDVTQFMKMERSCMVNDGVGSMESLS-NKRWFPYLDRYKCGD--VYLSSSEVVEALSPYLMEERK 147 (358)
Q Consensus 72 ~~g~~av~all-~~p~~I~rL~~~~~~~~~~~~~~~~~~LA-~~~~~~~~~~~~~~~--~~~~~q~v~~~l~~~~~~~r~ 147 (358)
.||.|+|++++ ++++.|.+||++.+..+.++. +.++.+. .+..+..+++..+++ ....|||+++.+.+..... .
T Consensus 5 i~G~~~v~eal~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~-~ 82 (244)
T PRK11181 5 IYGIHAVQALLERAPERFIEVFVLKGREDKRLL-PLINELEAQGIVIQLANRQTLDEKAEGAVHQGIIARVKPGRQLQ-E 82 (244)
T ss_pred EEehHHHHHHHhCCCCceeEEEEECCCcchHHH-HHHHHHHHcCCcEEEeCHHHHhhhhcCCCCceEEEEEecccccc-h
Confidence 69999999999 678999999998654332222 2232221 122344566666665 3567899888876543211 1
Q ss_pred HHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCChHHHHH
Q 018308 148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFN 227 (358)
Q Consensus 148 ~~i~~v~~~r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl~~~l~ 227 (358)
..++++++.+..+++|+||+|+||+|+|+|+|||++||+++|++....+.+.++++.|+|+|+.+|+|+.++.|+.++++
T Consensus 83 ~~~~~~~~~~~~~~~lvLd~v~dp~NlGai~Rta~a~G~~~vi~~~~~~~~~~~~~~r~s~Ga~~~l~~~~~~~~~~~l~ 162 (244)
T PRK11181 83 NDLPDLLASLEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPLIRVTNLARTMR 162 (244)
T ss_pred hhHHHHHhcCCCCEEEEEcCCCCcchHHHHHHHHHHcCCCEEEECCCCCCCCCCceEEecCCHHHcCeEEEcCCHHHHHH
Confidence 23566655555679999999999999999999999999999987665555555688999999999999999999999999
Q ss_pred HHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHHh
Q 018308 228 VLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCD 307 (358)
Q Consensus 228 ~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~rq 307 (358)
.|++.||++++++.++ +.++++.++++|++||||||+.|||+++++.||..|+|||.|.++|||||||+||+|||++||
T Consensus 163 ~l~~~g~~i~~t~~~~-~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~rq 241 (244)
T PRK11181 163 MLQEKNIWIVGTAGEA-DHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQ 241 (244)
T ss_pred HHHHCCCEEEEEeCCC-CcchhhcCCCCCEEEEECCCCCCcCHHHHHhCCEEEEEcCCCCCceeeHHHHHHHHHHHHHHh
Confidence 9999999999999764 467888999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 018308 308 RA 309 (358)
Q Consensus 308 r~ 309 (358)
|.
T Consensus 242 r~ 243 (244)
T PRK11181 242 RS 243 (244)
T ss_pred hc
Confidence 74
No 4
>PRK10864 putative methyltransferase; Provisional
Probab=100.00 E-value=6.2e-47 Score=372.34 Aligned_cols=234 Identities=18% Similarity=0.229 Sum_probs=192.6
Q ss_pred CCCCCCcHHHHHHhH-cCCcchhhhhhcccccccCCCcchhhhhhcc-CCCCccccccCCC--eeeCcHHHHHhcCCCcc
Q 018308 68 DENDTPSKDNVEKLL-TNPDDVTQFMKMERSCMVNDGVGSMESLSNK-RWFPYLDRYKCGD--VYLSSSEVVEALSPYLM 143 (358)
Q Consensus 68 ~~~~~~g~~av~all-~~p~~I~rL~~~~~~~~~~~~~~~~~~LA~~-~~~~~~~~~~~~~--~~~~~q~v~~~l~~~~~ 143 (358)
+|+..||.|+|.++| ++|+.|.+||+.++..+ ++. +.+++++.. ..+..+++..+++ ....||||++.+.....
T Consensus 107 ~~~~I~G~~aV~ealk~~~~~i~~l~~~~~~~~-~~~-~il~~~~~~~~~v~~V~~~~l~kls~~~~hqGV~A~v~~~~~ 184 (346)
T PRK10864 107 EETRVYGENACQALFQSRPEAIVRAWFIQSVTP-RFK-EALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNG 184 (346)
T ss_pred CCcEEEEHHHHHHHHhCCCCceeEEEEecCccH-HHH-HHHHHHHHcCCcEEEeCHHHHHHHhCCCCCCeEEEEEeCCCC
Confidence 468999999999999 66899999999987644 454 356666532 2233455555554 24568888877765432
Q ss_pred hhhHHHHHHHHhc-CCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCCh
Q 018308 144 EERKERFVNVVKN-RSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAP 222 (358)
Q Consensus 144 ~~r~~~i~~v~~~-r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl 222 (358)
. .++++++. ...+++||||+|+||+|+|+|+|||++||+++|++.+. +...+.++.|+|+|+.+++|++.+.|+
T Consensus 185 ~----~l~~~l~~~~~~~~vlvLd~I~DP~NlGaIiRTA~afGv~~Vil~~~-~~~~~~kvvRaS~Ga~~~v~i~~~~nl 259 (346)
T PRK10864 185 T----DVQQWLAQAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDSF 259 (346)
T ss_pred C----CHHHHhhccccCCeEEEEeCCCCCCcHHHHHHHHHHhCCCEEEECCC-CCCCchhHHHHhcChhhcceEEEeCCH
Confidence 2 24444443 23468999999999999999999999999999987754 444455789999999999999999999
Q ss_pred HHHHHHHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHH
Q 018308 223 RECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302 (358)
Q Consensus 223 ~~~l~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLy 302 (358)
.++++.|++.||+|++++... ..+++++++++|++||||||+.||++++++.||.+|+|||.|.++|||||||+||+||
T Consensus 260 ~~~L~~lk~~G~~Iv~t~~~~-~~~l~~~~~~~k~aLV~GnE~~GLs~~vl~~~D~~V~IPm~G~veSLNVSvAaaI~Ly 338 (346)
T PRK10864 260 VDVLDDFRQAGYTIVTTSSHK-GTPLFKASLPAKMVLVLGQEYDGLSDAARQQGDLSVSIDGTGNVESLNVSVATGVLLA 338 (346)
T ss_pred HHHHHHHHHCCCEEEEEeCCC-CcchhhcccCCCeEEEECCCCCCCCHHHHHhCCEEEEECCCCCCCCeEHHHHHHHHHH
Confidence 999999999999999999764 4789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 018308 303 HAVCDRA 309 (358)
Q Consensus 303 e~~rqr~ 309 (358)
|++||+.
T Consensus 339 E~~Rq~~ 345 (346)
T PRK10864 339 EWWRQNK 345 (346)
T ss_pred HHHHhhc
Confidence 9999864
No 5
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=100.00 E-value=1.5e-44 Score=339.95 Aligned_cols=232 Identities=24% Similarity=0.299 Sum_probs=178.5
Q ss_pred CCCcHHHHHHhHcCCcchhhhhhcccccccCCCcchhhhhhc-cCCCCccccccCCC--eeeCcHHHHHhcCCCcchhhH
Q 018308 71 DTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSN-KRWFPYLDRYKCGD--VYLSSSEVVEALSPYLMEERK 147 (358)
Q Consensus 71 ~~~g~~av~all~~p~~I~rL~~~~~~~~~~~~~~~~~~LA~-~~~~~~~~~~~~~~--~~~~~q~v~~~l~~~~~~~r~ 147 (358)
-.||.|+|++++.+. .++|........+.. +.++.+.+ +..+.++++..+++ ....|||+++.+.+......
T Consensus 3 ~i~G~~~v~eal~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~l~~l~~~~~~qGv~a~~~~~~~~~~- 77 (237)
T TIGR00186 3 YLYGKNAVLEALLNQ---QRVFILKGLESKRLK-KLIQLAKKQGINIQLVDRQKLDQLTKGGNHQGIAAKVKPILYKDL- 77 (237)
T ss_pred EEEehHHHHHHHhCC---CEEEEEecCcchHHH-HHHHHHHHcCCcEEEeCHHHHHHHhCCCCCCeEEEEEecCCCCCH-
Confidence 469999999999544 444554332111122 22222222 22344456655555 34578888887765433221
Q ss_pred HHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCChHHHHH
Q 018308 148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFN 227 (358)
Q Consensus 148 ~~i~~v~~~r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl~~~l~ 227 (358)
+.+.....+...+++|+||+|+||+|+|+|+|||++||+++|++.+.++.+...++.|+|+|+.+|+|+.++.|+.++++
T Consensus 78 ~~~~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~afG~~~vil~~~~~~~~~~~~~r~s~Ga~~~l~~~~~~~~~~~l~ 157 (237)
T TIGR00186 78 NDLYKTAKSKKQPFLLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTNLSRTIT 157 (237)
T ss_pred HHHHHhhhccCCCEEEEEcCCCCCccHHHHHHHHHHcCCCEEEECCCCcCCCCCceeeeeccccceeEEEEeCCHHHHHH
Confidence 12222223334578999999999999999999999999999987766544444578999999999999999999999999
Q ss_pred HHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHHh
Q 018308 228 VLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCD 307 (358)
Q Consensus 228 ~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~rq 307 (358)
.++++||++++++..++ ..+++.++++|++||||||+.||++++++.||.+|+|||.|.++|||||+|+||+|||+.||
T Consensus 158 ~l~~~g~~i~~~~~~~~-~~~~~~~~~~~~~lv~GnE~~Gls~~~l~~~d~~v~IP~~g~~~SLNVsvAaaI~lye~~rq 236 (237)
T TIGR00186 158 KLKESGFWTVGTDLDAQ-DTLYQVKLTKPLALVVGNEGEGVSRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFEIKRQ 236 (237)
T ss_pred HHHHCCCEEEEEecCCC-ccccccccCCCEEEEECCCCCCcCHHHHHhCCEEEEECCCCCCCcchHHHHHHHHHHHHHhc
Confidence 99999999999998764 34778889999999999999999999999999999999999999999999999999999988
Q ss_pred h
Q 018308 308 R 308 (358)
Q Consensus 308 r 308 (358)
|
T Consensus 237 r 237 (237)
T TIGR00186 237 R 237 (237)
T ss_pred C
Confidence 5
No 6
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=100.00 E-value=2e-38 Score=274.92 Aligned_cols=141 Identities=39% Similarity=0.578 Sum_probs=126.5
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccc-hhhhhcCCCceeEeEEEeCChHHHHHHHHHcCceEEE
Q 018308 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR-ENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIAT 238 (358)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~-~~~r~S~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~Iva 238 (358)
+++|+||+++||+|+|+|+|||++||+++|+++++++.+++. ++.|+|+|+.+|+|+..+.++.++++.+++.||++++
T Consensus 1 ~l~vvl~~~~~p~NlG~i~Rta~afG~~~v~l~~~~~~~~~~~~~~r~s~g~~~~~~~~~~~~~~~~l~~~~~~g~~i~~ 80 (142)
T PF00588_consen 1 MLIVVLDNVQDPGNLGAIIRTAAAFGVDGVILVGPRCADPYNPKVLRASAGAHEHLPIRRVDDLEEALKDLKENGYTIVA 80 (142)
T ss_dssp SEEEEEES-SSHHHHHHHHHHHHHTTESEEEEESSSSSTTTSHHHHHHTTTGHHCSHEEEESSHHHHHHHHHHTTEEEEE
T ss_pred CEEEEEeCCCCcCcHHHHHHHHHHhCCchhheeccccccccccccccccCChhhhhheeeeehhhhhcccccccccccce
Confidence 378999999999999999999999999999999877765554 7899999999999999999999999999999999999
Q ss_pred eecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHH
Q 018308 239 THVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302 (358)
Q Consensus 239 t~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLy 302 (358)
++. ++.++.+++|++|++||||||+.|||+++++.||.+|+|||.|.++|||||+|++|+||
T Consensus 81 ~~~--~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IP~~~~~~SLNva~A~~I~ly 142 (142)
T PF00588_consen 81 TSP--GATPLYELDFPKKVALVFGNESRGLSEEVLELCDHRVSIPMYGGVDSLNVAVAAAIALY 142 (142)
T ss_dssp EST--TSCEGGGSHTTSSEEEEEEBTTTBS-HHHHHTSSEEEE---STTSSS--HHHHHHHHHH
T ss_pred eee--ccccccccccccceEEEEcCcCCCCCcccccccceEEEEcCCCCCCeeEHHHHHHHHHC
Confidence 998 35789999999999999999999999999999999999999999999999999999998
No 7
>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2. this is part of the trmH (spoU) family of rRNA methylases
Probab=100.00 E-value=6.5e-38 Score=276.89 Aligned_cols=148 Identities=14% Similarity=0.101 Sum_probs=130.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccc-hhhhhcCCCceeEeEEEeCChHHHHHHHHHcCceEEEe
Q 018308 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR-ENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239 (358)
Q Consensus 161 l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~-~~~r~S~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~Ivat 239 (358)
+-||||+++||+|+|+|+|||++||++.++ +.+++.+.+. +..|+++|+++++|+.++.|+.++++.|++.| ++++
T Consensus 2 ~~vvL~~v~dP~NlG~iiRta~afGv~~vi-~~~~~~~~~~~~~~ra~~~~~~~~~~~~~~~~~~~l~~l~~~g--v~~~ 78 (153)
T TIGR00185 2 LNIVLYEPEIPPNTGNIARTCAATGTRLHL-IEPLGFFLDDKRLKRAGLDYWEFVQLFYHKSWEEFLEAEKPQK--LFAL 78 (153)
T ss_pred eEEEEcCCCCCChHHHHHHHHHHhCCEEEE-ECCCCCCCccHHHHhhccchHhcCCeEEeCCHHHHHHhCcCCC--EEEE
Confidence 468999999999999999999999998775 4444444444 46689999999999999999999999999988 6666
Q ss_pred ecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcC-CcEEEECCCCCCCcccHHHHHHHHHHHHHHhhhhcc
Q 018308 240 HVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLS-DLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATRL 312 (358)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~c-D~~v~IPm~G~veSLNVSvAaaIlLye~~rqr~~~~ 312 (358)
+..+ +..+++++++.|.+||||||+.|||+++++.| |..++|||+|.++|||||+|+||+|||+.||+..++
T Consensus 79 ~~~~-~~~~~~~~~~~~~alv~GnE~~Gls~~~l~~~~d~~v~IP~~g~~~SLNvavA~aI~lye~~rq~~~~~ 151 (153)
T TIGR00185 79 TKKG-TPAHSQVTYKLGDYLMFGPETRGLPQSILDNMMEQKIRIPMTNNVRSLNLSNSVAIVVYEAWRQLGYKG 151 (153)
T ss_pred eCCC-CCcceeeccCCCCEEEECCCCCCCCHHHHhhCCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHccCCcC
Confidence 6543 56788889999999999999999999999999 999999999999999999999999999999876553
No 8
>PRK10358 putative rRNA methylase; Provisional
Probab=100.00 E-value=4.3e-35 Score=260.25 Aligned_cols=148 Identities=12% Similarity=0.076 Sum_probs=122.8
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhh-cCCCceeEeEEEeCChHHHHHHHHHcCceEEEe
Q 018308 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHV-SMGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239 (358)
Q Consensus 161 l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~-S~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~Ivat 239 (358)
+-||||+++||||+|+|+|||+|||++.+ ++.+++.+..+++.|+ ++|...|+++..+.++.++++.+ .+++++++
T Consensus 2 ~~ivL~~~~dPgNlGti~Rta~a~G~~~v-iv~~~~d~~~~k~~raag~~~~~~~~~~~~~~l~~~l~~~--~~~~v~~~ 78 (157)
T PRK10358 2 LNIVLFEPEIPPNTGNIIRLCANTGFRLH-IIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYAAFLEAE--NPQRLFAL 78 (157)
T ss_pred eEEEEeCCCCcChHHHHHHHHHHhCCEEE-EECCCCCCCChHHHHhcccccccceeeEEcCCHHHHHHhC--CCceEEEE
Confidence 46899999999999999999999999766 5566654333466664 35555666777778998888743 46899999
Q ss_pred ecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhc--CCcEEEECCCCCCCcccHHHHHHHHHHHHHHhhhhcc
Q 018308 240 HVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSL--SDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATRL 312 (358)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~--cD~~v~IPm~G~veSLNVSvAaaIlLye~~rqr~~~~ 312 (358)
+..+ ...+.+.++.++.+||||||++||++++++. ||..|+|||.|.++|||||+|++|+|||++|||..++
T Consensus 79 ~~~~-~~~~~~~~~~~~~~lvfGnE~~GLs~~~~~~~~~d~~v~IPm~~~~eSLNvAvA~aI~lyE~~rqr~~~~ 152 (157)
T PRK10358 79 TTKG-TPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQLGYPG 152 (157)
T ss_pred eCCC-CCCccccccCCCcEEEECCCCCCCCHHHHhcCCCCeEEEEcCCCCCccchHHHHHHHHHHHHHHhhcCCc
Confidence 9864 4456677788899999999999999999998 8999999999999999999999999999999986554
No 9
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen
Probab=100.00 E-value=2e-32 Score=257.29 Aligned_cols=164 Identities=21% Similarity=0.256 Sum_probs=131.4
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEE-EeCChHHHHHHHHHcCceEEEe
Q 018308 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIE-LWDAPRECFNVLRSRGYRIATT 239 (358)
Q Consensus 161 l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~-~~~nl~~~l~~Lk~~G~~Ivat 239 (358)
+.|||++++||+|+|+|+|+|++||+++++++.+.+. ....+.++|+|+.++++.. .++++.++++.+ + .++||
T Consensus 4 i~vvL~~~~~p~NiGaiaR~~~~fG~~~l~lv~p~~~-~~~~a~~~a~ga~~~l~~~~v~~~l~eal~~~---~-~vv~t 78 (233)
T TIGR00050 4 IRIVLVEPSHSGNIGSIARAMKNMGLTELCLVNPKSH-LEEEAYALAAGARDILDNAKVVDDLDEALDDC---D-LVVGT 78 (233)
T ss_pred eEEEEECCCCCCCHHHHHHHHHhCCCCEEEEeCCCcC-CCHHHHHHhCChHHhhccCEEECCHHHHHhcC---C-EEEEE
Confidence 6799999999999999999999999999999988765 5567889999999999864 468888888643 3 57888
Q ss_pred ecCCCceeeccc------------CCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHHh
Q 018308 240 HVGMDAISVYDM------------DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCD 307 (358)
Q Consensus 240 ~~~~~~~~l~~~------------~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~rq 307 (358)
+... ..+.+. ++.+|+|||||||+.||++++++.||.+|+|||.|.++|||||+|++|+|||+.++
T Consensus 79 t~~~--~~~~~~~~~~~~~~~~~~~~~~~~aLvFG~E~~GL~~~~l~~cd~~v~IP~~~~~~SLNla~Av~I~lye~~~~ 156 (233)
T TIGR00050 79 SARS--RNLQRPLLTPRELAPKLVAYKGKIAIVFGREDSGLTNEELLKCHVLVSIPTSEEYPSLNLSHAVAVILYELRMA 156 (233)
T ss_pred CCCc--CCCCCCcCCHHHHHHHHHhhcCCEEEEECCCCCCCCHHHHHhCCEEEEecCCCCCCeeeHHHHHHHHHHHHHHh
Confidence 7542 333332 25679999999999999999999999999999999999999999999999999876
Q ss_pred hhhcccC-CC-CCCCHHHHHHHHHHH
Q 018308 308 RATRLVG-CN-GDLTSEEKQILLAEF 331 (358)
Q Consensus 308 r~~~~~~-~~-~~Ls~eE~~~l~~~~ 331 (358)
+...... .. ...+.+|.+.++.+|
T Consensus 157 ~~~~~~~~~~~~~a~~~~~~~l~~~l 182 (233)
T TIGR00050 157 FLVQEENLIDKEYATTDQLELLLEHL 182 (233)
T ss_pred hcccCCCccCCCCCCHHHHHHHHHHH
Confidence 5443211 12 234556666655444
No 10
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Probab=99.97 E-value=4.6e-31 Score=249.81 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=128.8
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEE-EeCChHHHHHHHHHcCceEEE
Q 018308 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIE-LWDAPRECFNVLRSRGYRIAT 238 (358)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~-~~~nl~~~l~~Lk~~G~~Iva 238 (358)
.+.|||++++||+|+|+|+|+|++||+++++++.+.+. .++.+.++|+||.+.++.. .+++++++++. ..+++|
T Consensus 4 ~i~vVLv~~~~pgNiGaiaRa~~~fG~~~l~lv~p~~~-~~~~a~~~a~GA~~~l~~a~i~~~l~eal~~----~~~vva 78 (245)
T PRK15114 4 NIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNATIVDTLDEALAG----CSLVVG 78 (245)
T ss_pred CeEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeCCCCC-CcCHHHHHcCCchhhcccCeEecCHHHHHhc----CCEEEE
Confidence 37899999999999999999999999999999988654 4566888999999765433 34677776654 336999
Q ss_pred eecCCCceee------------cccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018308 239 THVGMDAISV------------YDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (358)
Q Consensus 239 t~~~~~~~~l------------~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~r 306 (358)
|+........ ....+.+++|||||||++||+++.++.||.+++|||.|.++|||||+|++|+|||+.+
T Consensus 79 tt~r~~~~~~~~~~~~~~~~~~~~~~~~~~~alVFG~E~~GLs~e~l~~cd~~v~IP~~~~~~SLNla~AvaI~lYE~~~ 158 (245)
T PRK15114 79 TSARSRTLPWPMLDPRECGLKSVAEAANAPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRM 158 (245)
T ss_pred EcCCccCCcccccCHHHHHHHHHhhccCCCEEEEECCCCCCCCHHHHHhCCeEEEecCCCCCCcccHHHHHHHHHHHHHH
Confidence 9875432111 1123578999999999999999999999999999999999999999999999999976
Q ss_pred hhhhcccC-------C-CCCCCHHHHHHHHHHH
Q 018308 307 DRATRLVG-------C-NGDLTSEEKQILLAEF 331 (358)
Q Consensus 307 qr~~~~~~-------~-~~~Ls~eE~~~l~~~~ 331 (358)
........ . ....+.+|.+.++.+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~l~~~l 191 (245)
T PRK15114 159 AWLATQENGEPQVEHEETPYPLVDDLERFYGHL 191 (245)
T ss_pred HhcccccccccccccccCCCCCHHHHHHHHHHH
Confidence 53221100 1 1225677888777665
No 11
>PRK10433 putative RNA methyltransferase; Provisional
Probab=99.97 E-value=1.9e-29 Score=236.22 Aligned_cols=165 Identities=19% Similarity=0.287 Sum_probs=129.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEe-EEEeCChHHHHHHHHHcCceEEEe
Q 018308 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLD-IELWDAPRECFNVLRSRGYRIATT 239 (358)
Q Consensus 161 l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~-v~~~~nl~~~l~~Lk~~G~~Ivat 239 (358)
+.|||+++++|+|+|+|+|+|++||+++++++++.+. ....+.+.|+||..+++ ...++|++++++++ +| ++||
T Consensus 3 i~vVLv~p~~p~NiGaiaRam~nfG~~~L~lV~p~~~-~~~~a~~~A~gA~d~L~~a~v~~tL~eAl~d~---~~-vigt 77 (228)
T PRK10433 3 LTIILVAPARAENVGAAARAMKTMGFSELRIVDSQAH-LEPAARWVAHGSGDILDNAKVFDTLAEALHDV---DF-TVAT 77 (228)
T ss_pred eEEEEEcCCCCccHHHHHHHHHHCCCCEEEEeCCCCC-CcHHHHHHhccHHHHhcCceEECCHHHHHHhC---Ce-EEEE
Confidence 6799999999999999999999999999999988753 23456789999999998 44578999998874 54 5555
Q ss_pred ecCCCc--eeec----------cc-CCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018308 240 HVGMDA--ISVY----------DM-DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (358)
Q Consensus 240 ~~~~~~--~~l~----------~~-~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~r 306 (358)
+...+. .++. +. ++.++++||||+|..||+++.++.||.+++|||.|.++|||||+|++|++||+.+
T Consensus 78 tar~~~~~~~~~~p~~~~~~l~~~~~~~~~~alvfG~E~~Gl~~~~l~~c~~~~~IP~~~~~~SLNla~A~~i~~ye~~~ 157 (228)
T PRK10433 78 TARSRAKFHYYATPAELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAG 157 (228)
T ss_pred ccCCCCCCCcccCHHHHHHHHHhhhcccCCEEEEECCCCCCCCHHHHHhCCcEEEecCCCCCcceeHHHHHHHHHHHHHH
Confidence 543221 1111 11 2358899999999999999999999999999999999999999999999999875
Q ss_pred hhhhcccCCCCCCCHHHHHHHHHHH
Q 018308 307 DRATRLVGCNGDLTSEEKQILLAEF 331 (358)
Q Consensus 307 qr~~~~~~~~~~Ls~eE~~~l~~~~ 331 (358)
...... ......+.+|.+.++.+|
T Consensus 158 ~~~~~~-~~~~~a~~~ele~l~~~l 181 (228)
T PRK10433 158 LMQQPA-KSDTTADEGQLQALRQRA 181 (228)
T ss_pred hhccCC-cCCCCCCHHHHHHHHHHH
Confidence 421111 222346778888776665
No 12
>KOG0838 consensus RNA Methylase, SpoU family [RNA processing and modification]
Probab=99.96 E-value=3.9e-29 Score=234.20 Aligned_cols=209 Identities=32% Similarity=0.373 Sum_probs=165.1
Q ss_pred CCCCCcHHHHHHhH-cCCcchhhhhhcccccccCCCcchhhhhhccCCCCccccccCCCeeeCcHHHHHhcCCCcchhhH
Q 018308 69 ENDTPSKDNVEKLL-TNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERK 147 (358)
Q Consensus 69 ~~~~~g~~av~all-~~p~~I~rL~~~~~~~~~~~~~~~~~~LA~~~~~~~~~~~~~~~~~~~~q~v~~~l~~~~~~~r~ 147 (358)
+.-+||.|.|.+.+ .+.+.-+-+|+.....- +.. +.+.+..+++..+++.
T Consensus 42 ~e~~~G~~sv~~al~~~kR~~~~~~~~~~~~~-~~~----------------------e~~~v~~~~~~~~s~h------ 92 (271)
T KOG0838|consen 42 GESVFGTHSVLAALSNGKRDCRGLLLQSATDF-RST----------------------EFELVLRRDIEAVSKH------ 92 (271)
T ss_pred cceeechhhhHHHHhcccccceeeeecccccc-Ccc----------------------eeeehhhhhhhccChh------
Confidence 45789999999999 66677777777542211 111 1111112233333321
Q ss_pred HHHHHHHhcC-------CccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeC
Q 018308 148 ERFVNVVKNR-------SYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWD 220 (358)
Q Consensus 148 ~~i~~v~~~r-------~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~ 220 (358)
.+....+.+ ...++++||++.||+|+|+|+|+|++||++.++++..++.+.++.+.++++|+.+|+|+.+++
T Consensus 93 -~L~~~t~~r~h~g~~leasl~vylde~tDp~n~gaI~rsA~~lg~~~v~lv~~n~s~lS~~vskss~gale~l~I~q~~ 171 (271)
T KOG0838|consen 93 -DLNSLTDFRPHNGILLEASLCVYLDEVTDPQNIGAIIRSAYFLGADGVLLVKGNSSPLSPVVSKSSAGALEVLPIRQVD 171 (271)
T ss_pred -hHHHHHhhccccceEEeeEEEeeccCccCCcchHHHHHhHHHhcCCceEEEeccCCCCchhHHHhhhchhheeeHHHcC
Confidence 122222211 123789999999999999999999999999999999888888888999999999999999999
Q ss_pred ChHHHHHHHHHcCceEEEeecCCC------ceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCC------CC
Q 018308 221 APRECFNVLRSRGYRIATTHVGMD------AISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKG------MV 288 (358)
Q Consensus 221 nl~~~l~~Lk~~G~~Ivat~~~~~------~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G------~v 288 (358)
+..++++..+++|+++++|..... ...+...++..|+++|+|||+.|+++.+++.||..+.||+.| .+
T Consensus 172 ~~~efl~vsvaaG~~l~~t~~~~~~~~~~~~~~l~~~~~~~Pv~lv~Gneg~Gi~~~vl~~~d~~~si~~n~~~~d~~~v 251 (271)
T KOG0838|consen 172 NPLEFLNVSVAAGIRLHGTCSWAPASKTISAVSLKFIDPEEPVALVLGNEGAGIRPGVLELCDLRVSIPGNGFEKDNGAV 251 (271)
T ss_pred CHHHHHHHHHhCceEEEEeecCcCCcccccchhhhhcCCCCCeEEEecccccccChhhhhccceeEecCCCccccCCcce
Confidence 999999999999999999876443 456778889999999999999999999999999999999943 47
Q ss_pred CcccHHHHHHHHHHHHHHh
Q 018308 289 DSFNVSVAAGILMHHAVCD 307 (358)
Q Consensus 289 eSLNVSvAaaIlLye~~rq 307 (358)
+|||||+|+++++|++..+
T Consensus 252 ~SlNvSvaa~ll~~~~~~~ 270 (271)
T KOG0838|consen 252 DSLNVSVAAGLLLYHFLNE 270 (271)
T ss_pred eeccchHHHHHHHHHHhhc
Confidence 9999999999999999755
No 13
>KOG2506 consensus SpoU rRNA Methylase family protein [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.7e-26 Score=221.18 Aligned_cols=147 Identities=29% Similarity=0.285 Sum_probs=111.6
Q ss_pred CCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCChHHHHH---H--HHH
Q 018308 157 RSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFN---V--LRS 231 (358)
Q Consensus 157 r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl~~~l~---~--Lk~ 231 (358)
..-++++|+|+|+||+|+|+|+|||++||+++|++...+|+++..++.|+++||.|.+||+.. ++...-- . .+.
T Consensus 214 ~~lp~~lvcdnirdpgnlgti~rsaaa~~cs~v~lt~gccdpwe~kalrag~ga~fr~pi~~~-~w~~l~l~~pp~~ad~ 292 (371)
T KOG2506|consen 214 PSLPRVLVCDNIRDPGNLGTIVRSAAAFNCSGVFLTPGCCDPWEDKALRAGRGASFRLPIVSG-NWNHLKLLEPPFQADL 292 (371)
T ss_pred CCCCeEEEeccCCCCcchHHHHHHHhhCCCcceeecCCcCCccchhhhhccCCcceecceecC-chhhhhccCChhHHhh
Confidence 445789999999999999999999999999999877655555555899999999999999863 5543211 1 112
Q ss_pred cCceEEEeecCCCceeeccc----C-CCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018308 232 RGYRIATTHVGMDAISVYDM----D-WSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (358)
Q Consensus 232 ~G~~Ivat~~~~~~~~l~~~----~-~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~r 306 (358)
.+..+.+|... -.+.+.+ + ...+.++|+|.|++|+|++.++.|.. |.|||.|.++|||||+|++|+|||+.|
T Consensus 293 c~~~~a~t~qr--~~~~~k~~e~ad~~~ap~~liigge~~gvseea~~~~~l-vgip~a~g~dslnva~a~~illfel~r 369 (371)
T KOG2506|consen 293 CAGHPATTTQR--LKPVSKLVEFADSLAAPLCLIIGGEGNGVSEEARKVCVL-VGIPMAGGFDSLNVAVAGGILLFELQR 369 (371)
T ss_pred hcCchHhhhhh--hccchhhhHHHhhccCceEEEEccCcCCcCHHHHHHHHH-cCCcccCCcchhhhHHHHHHHHHHHhh
Confidence 22223333221 1111111 1 34689999999999999999999975 779999999999999999999999965
Q ss_pred h
Q 018308 307 D 307 (358)
Q Consensus 307 q 307 (358)
+
T Consensus 370 ~ 370 (371)
T KOG2506|consen 370 L 370 (371)
T ss_pred c
Confidence 3
No 14
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.7e-24 Score=202.91 Aligned_cols=165 Identities=20% Similarity=0.259 Sum_probs=128.5
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEe-EEEeCChHHHHHHHHHcCceEEE
Q 018308 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLD-IELWDAPRECFNVLRSRGYRIAT 238 (358)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~-v~~~~nl~~~l~~Lk~~G~~Iva 238 (358)
.+.|||.+++.|+|+|+++|.+++||+..+++++|.+. +...+...|+||.+.+. ...++++++++.++. .++|
T Consensus 4 ~i~iVLVep~~~gNIG~vARaMKNfGl~eL~LV~Pr~~-~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~----~v~a 78 (242)
T COG0565 4 NIRIVLVEPSHPGNIGSVARAMKNFGLSELRLVNPRAG-LDEEARALAAGARDILENAKIVDTLEEALADCD----LVVA 78 (242)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHhCCcceEEEECCCCC-CCHHHHHHhccchhhhccCeeecCHHHHhcCCC----EEEE
Confidence 36799999999999999999999999999999998765 45678889999988774 667789999987664 5777
Q ss_pred eecCCCceeeccc---CC-----------CCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHH
Q 018308 239 THVGMDAISVYDM---DW-----------SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHA 304 (358)
Q Consensus 239 t~~~~~~~~l~~~---~~-----------~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~ 304 (358)
|+.... .+... |+ .+|+|||||+|..||++|.++.||.+++||+++.+.|||+|+|++|++||+
T Consensus 79 Ttar~r--~~~~~~~~P~e~~~~l~~~~~~~~vAlvFGRE~~GLtNeEl~~c~~~v~IP~~p~Y~sLNLa~AV~ii~YEl 156 (242)
T COG0565 79 TTARSR--DLLRPLRTPREAAPELLEKAKGGKVALVFGRERVGLTNEELALCDVLVTIPANPDYPSLNLAQAVQVILYEL 156 (242)
T ss_pred eccccC--cccccccCHHHHHHHHHHHhcCCCeEEEECCccCCCCHHHHHhhhEEEecCCCCccccccHHHHHHHHHHHH
Confidence 774322 11111 11 379999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccc---CCCCCCCHHHHHHHHHHH
Q 018308 305 VCDRATRLV---GCNGDLTSEEKQILLAEF 331 (358)
Q Consensus 305 ~rqr~~~~~---~~~~~Ls~eE~~~l~~~~ 331 (358)
++.-+.... ......+++|.+.++.+.
T Consensus 157 ~~~~l~~~~~~~~~~~~at~~ele~l~~hl 186 (242)
T COG0565 157 RKAELAQEGSSGIEDELATKEELELLYEHL 186 (242)
T ss_pred HHhhcccccccccccCCCCHHHHHHHHHHH
Confidence 763222221 123345566665555443
No 15
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2e-24 Score=189.19 Aligned_cols=148 Identities=17% Similarity=0.192 Sum_probs=131.4
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccc-hhhhhcCCCceeEeEEEeCChHHHHHHHHHcCceEEEe
Q 018308 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR-ENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239 (358)
Q Consensus 161 l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~-~~~r~S~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~Ivat 239 (358)
+-|||.+++-|+|.|+|+|+|+++|.. +|++++-..+... ...|+.+-.++.+.+.++++++++++..+. |-++++.
T Consensus 3 ~~IvL~~PeIP~NTGNI~R~ca~tga~-LhlI~PlGF~l~dk~lkRAGlDY~~~~~l~~h~s~e~fl~~~~~-~~rl~~~ 80 (155)
T COG0219 3 LNIVLYQPEIPPNTGNIIRTCAATGAE-LHLIEPLGFDLDDKRLKRAGLDYHEKASLTEHDSLEAFLEAEPI-GGRLFAL 80 (155)
T ss_pred cEEEEECCCCCCchhHHHHHHHhcCCe-EEEEccCCCccchhhhhhcccchHhhcceEEeCCHHHHHhhccC-CceEEEE
Confidence 568999999999999999999999987 6678886666665 588999999999999999999999999887 7788888
Q ss_pred ecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcE-EEECCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 018308 240 HVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLR-CSIPMKGMVDSFNVSVAAGILMHHAVCDRATR 311 (358)
Q Consensus 240 ~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~-v~IPm~G~veSLNVSvAaaIlLye~~rqr~~~ 311 (358)
+..+ +..+.+..++..-.|+||.|..||++++++..... ++|||...+.|||+|++++|++||++||....
T Consensus 81 tt~~-~~~~~~~~f~~~d~llFG~Es~GLP~~i~~~~~~~~irIPm~~~~RSLNLsnsvavv~yEa~RQ~~~~ 152 (155)
T COG0219 81 TTKG-TTTYTDVSFQKGDYLLFGPESRGLPEEILDAAPDRCIRIPMRPGVRSLNLSNTVAVVLYEALRQLGFA 152 (155)
T ss_pred Eecc-ccccccccCCCCCEEEECCCCCCCCHHHHHhCccceEEeccCCCCccchHHHHHHHHHHHHHHHhCCc
Confidence 8764 56788888998889999999999999999887666 99999999999999999999999999986543
No 16
>KOG0839 consensus RNA Methylase, SpoU family [RNA processing and modification]
Probab=99.82 E-value=2.1e-20 Score=200.32 Aligned_cols=152 Identities=21% Similarity=0.330 Sum_probs=136.4
Q ss_pred CCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEe--CChHHHHHHHHHcCc
Q 018308 157 RSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELW--DAPRECFNVLRSRGY 234 (358)
Q Consensus 157 r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~--~nl~~~l~~Lk~~G~ 234 (358)
....++||..=|..|.|+|.|.|||+.||+.-+.|- .-.....+.....|+.|..|+|+..+ +++..++++.|+.||
T Consensus 1323 grssLIVVASLVDKppNLgGicRTcEVFgvs~LvVa-d~~vi~DkQFk~lSVtAE~W~pieeVk~~~L~~fLq~kK~EGy 1401 (1477)
T KOG0839|consen 1323 GRSSLIVVASLVDKPPNLGGICRTCEVFGVSLLVVA-DIKVINDKQFKNLSVTAERWMPIEEVKLDELASFLQEKKKEGY 1401 (1477)
T ss_pred CceeEEEEeecccCCCccchhhhhhhhhCcceEEEe-eeeeecchhhhheeeeHHhccchhccChHHHHHHHHHhhhcCc
Confidence 445689999999999999999999999999988544 33333334467789999999999877 588899999999999
Q ss_pred eEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHHhhh
Q 018308 235 RIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRA 309 (358)
Q Consensus 235 ~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~rqr~ 309 (358)
+|+|+....++..++++.||+|.+||+|+|..|++-.++..-|.+|.||+.|-+.||||-|++|+++||+.||.+
T Consensus 1402 TiIglEQTakSV~Ld~fqFPkKslilLG~EkEGIPvnLl~~LD~cvEIpQ~GviRSLNVHVsgAl~iweYTrQqr 1476 (1477)
T KOG0839|consen 1402 TIIGLEQTAKSVKLDNFQFPKKSLILLGTEKEGIPVNLLSELDLCVEIPQFGVIRSLNVHVSGALIIWEYTRQQR 1476 (1477)
T ss_pred EEEeehhcccccccccccCCcceeEEecccccCCcHHHHHHHhHheeccccceeeeeeeehhHHHHHHHHHHHhc
Confidence 999999998899999999999999999999999999999999999999999999999999999999999998753
No 17
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=98.38 E-value=3.7e-06 Score=76.18 Aligned_cols=121 Identities=17% Similarity=0.122 Sum_probs=82.6
Q ss_pred HHHHHHHHhCCCEEEEecCCCccccchhh--hhcCCCceeEeEEEeCChHHHHHHHHHcCceEEEeecCCC--ceeeccc
Q 018308 176 ATFRSADALGVQSVHVVSCDSSKRYRENR--HVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMD--AISVYDM 251 (358)
Q Consensus 176 aIlRTA~afGv~~Vii~~~~~~~~~~~~~--r~S~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~Ivat~~~~~--~~~l~~~ 251 (358)
-+.|||-+||+++++++.+...- -..+. -.--|+.+. +....++.+++++.+..| .++.+...+. ...+.++
T Consensus 21 hvartARafGa~~~yiv~~~~~q-~~~v~~I~~~WGg~fn--v~~~~s~~~~i~~~k~~G-~vvhLtmyga~~~~~~~~i 96 (176)
T PRK03958 21 HVGLTARALGADKIILASNDEHV-KESVEDIVERWGGPFE--VEVTKSWKKEIREWKDGG-IVVHLTMYGENIQDVEPEI 96 (176)
T ss_pred HHHHHHHHcCCceEEEecCcHHH-HHHHHHHHHhcCCceE--EEEcCCHHHHHHHHHhCC-cEEEEEEecCCccchHHHH
Confidence 37899999999999998763211 11111 122388776 556689999999999666 3333322211 1234444
Q ss_pred C----CCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018308 252 D----WSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (358)
Q Consensus 252 ~----~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~r 306 (358)
. -..|..|||| ++|++.++.+.||..+ ..|..+= .|-.|+||+|--++.
T Consensus 97 r~~~~~~~p~LIvvG--g~gvp~evye~aDynl---gvg~qpH-SvrAAlAI~LDRL~~ 149 (176)
T PRK03958 97 REAHRKGEPLLIVVG--AEKVPREVYELADWNV---AVGNQPH-SEVAALAVFLDRLFE 149 (176)
T ss_pred HHhhccCCcEEEEEc--CCCCCHHHHhhCCEEe---ccCCCCh-HHHHHHHHHHHHhcC
Confidence 1 1678999999 8899999999999998 3444555 677788888887763
No 18
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=98.22 E-value=6.8e-06 Score=74.68 Aligned_cols=129 Identities=20% Similarity=0.293 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCcccc--ch---hhhhcCCCce------eE-eEEEeCChHHHHHHHHH---cCceEEE
Q 018308 174 VSATFRSADALGVQSVHVVSCDSSKRY--RE---NRHVSMGAEK------WL-DIELWDAPRECFNVLRS---RGYRIAT 238 (358)
Q Consensus 174 lGaIlRTA~afGv~~Vii~~~~~~~~~--~~---~~r~S~Ga~~------~v-~v~~~~nl~~~l~~Lk~---~G~~Iva 238 (358)
+=-|.|+|..||+++.+|+.|-..... .. ......|+.. -+ -+..++++++++++..+ +--.+++
T Consensus 30 lHDIAR~~rTYgv~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~ 109 (185)
T PF09936_consen 30 LHDIARSARTYGVKGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVA 109 (185)
T ss_dssp HHHHHHHHHHTT-SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE
T ss_pred HHhhhhhhhccCCcCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEE
Confidence 446999999999999999976221100 00 1123334321 11 13445899999999876 3356888
Q ss_pred eecC--CCceeeccc-----CCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCC--CCCCcccHHHHHHHHHHHH
Q 018308 239 THVG--MDAISVYDM-----DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMK--GMVDSFNVSVAAGILMHHA 304 (358)
Q Consensus 239 t~~~--~~~~~l~~~-----~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~--G~veSLNVSvAaaIlLye~ 304 (358)
|+.. .+..++.++ .-.+|+.|+||. ++||.+|+++.||..+ =|.. |.+.=|.|=.|+||+|=-+
T Consensus 110 TsAr~~~~~is~~~lr~~l~~~~~P~LllFGT-GwGL~~ev~~~~D~iL-ePI~g~~~YNHLSVRsAvAIiLDRL 182 (185)
T PF09936_consen 110 TSARKYPNTISYAELRRMLEEEDRPVLLLFGT-GWGLAPEVMEQCDYIL-EPIRGAGDYNHLSVRSAVAIILDRL 182 (185)
T ss_dssp --SS--SS-B-HHHHHHHHHH--S-EEEEE---TT---HHHHTT-SEEB---TTTTSS-----HHHHHHHHHHHH
T ss_pred ecCcCCCCCcCHHHHHHHHhccCCeEEEEecC-CCCCCHHHHHhcCeeE-cccccCCCCccchHHHHHHHHHHHH
Confidence 8865 333444333 246899999997 8999999999999876 3554 4678899999999998544
No 19
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=97.76 E-value=0.00014 Score=63.31 Aligned_cols=134 Identities=17% Similarity=0.194 Sum_probs=95.8
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCcccc---chhhhhc--CCCceeEeEEEeCChHHHHHHHHHcCc
Q 018308 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRY---RENRHVS--MGAEKWLDIELWDAPRECFNVLRSRGY 234 (358)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~---~~~~r~S--~Ga~~~v~v~~~~nl~~~l~~Lk~~G~ 234 (358)
.+++++.|+..++-+=-+.|.+..||++.+++.......-. +.+.|-+ +| .|+..++++.++++-|+-.-.
T Consensus 2 ev~vvlHN~~S~~rv~e~ariaygfg~k~lV~tka~g~AAQsGIp~~~kla~k~G----~~vlvf~dL~DAlevL~P~v~ 77 (147)
T COG4080 2 EVIVVLHNVSSVQRVLEFARIAYGFGAKRLVLTKAKGSAAQSGIPEVLKLAFKLG----KPVLVFPDLDDALEVLRPDVT 77 (147)
T ss_pred cEEEEEecCCchHHHHHHHHHHcccCccEEEEEecccHhhhhccHHHHHHHHHhC----CcEEEehhHHHHHHhcCCceE
Confidence 46899999999999999999999999999977654321111 1122222 23 588889999999999985433
Q ss_pred eEEEeecCCCceeecccCC----CCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHH
Q 018308 235 RIATTHVGMDAISVYDMDW----SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAV 305 (358)
Q Consensus 235 ~Ivat~~~~~~~~l~~~~~----~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~ 305 (358)
..+++... .-..+++ .+++.+||+.=..|+++..++.-+...+| ..+.+.++ -++||+||++.
T Consensus 78 ll~~~~~~----~ek~~dp~e~ie~~vliVf~ga~~gl~k~El~lg~~~~y~-ve~~VG~~---g~lAi~Lyell 144 (147)
T COG4080 78 LLVGSASE----GEKKLDPNEKIEGRVLIVFSGAEPGLTKRELELGADLRYI-VEADVGEL---GALAIFLYELL 144 (147)
T ss_pred EEecCccc----ccccCCccccccceEEEEEecCCCCcChhhcccCCcEEEE-EeccchHH---HHHHHHHHHHH
Confidence 33332222 2233333 45899999988899999999988888888 55556554 47899999985
No 20
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.23 E-value=0.027 Score=50.44 Aligned_cols=119 Identities=15% Similarity=0.147 Sum_probs=79.2
Q ss_pred HHHHHHHhCCCEEEEecCCCccccchhh--hhcCCCceeEeEEEeCChHHHHHHHHHcCceEEEeecCCCceeecccC--
Q 018308 177 TFRSADALGVQSVHVVSCDSSKRYRENR--HVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDMD-- 252 (358)
Q Consensus 177 IlRTA~afGv~~Vii~~~~~~~~~~~~~--r~S~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~Ivat~~~~~~~~l~~~~-- 252 (358)
+.-||.|||++++++.+.+.......+. -..-|+-|.+. ...|+...+++.++ |-.++.++.=+ .++.++.
T Consensus 23 V~LtARAfGA~gil~~~e~De~v~esv~dVv~rwGG~F~v~--~~~nw~~~i~~wk~-gG~vvHLTMYG--~~i~dv~~e 97 (179)
T COG1303 23 VALTARAFGADGILLDGEEDEKVVESVEDVVERWGGPFFVK--FGVNWRKVIREWKE-GGIVVHLTMYG--LNIDDVIDE 97 (179)
T ss_pred hhhhhHhhCCceEEEcCcccHHHHHHHHHHHHhcCCCEEEE--EcccHHHHHHHhhc-CCEEEEEEecC--CcchhhhHH
Confidence 4568999999999766443222222222 23567777554 44699999999998 66777776643 3455442
Q ss_pred --C-CCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018308 253 --W-SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (358)
Q Consensus 253 --~-~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~r 306 (358)
- .....+|+|.|. ++.++-+.||..|.|---+.-+ -.|.||+|--++.
T Consensus 98 i~~~~k~~lvvVGaeK--Vp~evYelADyNV~VgnQPHSE----VaaLAvFLDRl~~ 148 (179)
T COG1303 98 IRESKKDVLVVVGAEK--VPGEVYELADYNVSVGNQPHSE----VAALAVFLDRLFE 148 (179)
T ss_pred HHhcCCcEEEEEcccc--CCHHHhhhcccceecCCCccHH----HHHHHHHHHHHhC
Confidence 1 234789999997 9999999999999885432211 2366777776664
No 21
>PF12105 SpoU_methylas_C: SpoU, rRNA methylase, C-terminal; InterPro: IPR022724 This domain is found in bacteria and is about 60 amino acids in length. It is found in association with PF00588 from PFAM. This domain has a conserved LFE sequence motif. Some members of the Pfam family SpoU_methylase, PF00588 from PFAM, carry this very distinctive sequence at their extreme C terminus. The exact function of this domain is not known. ; GO: 0009020 tRNA (guanosine-2'-O-)-methyltransferase activity; PDB: 1ZJR_A.
Probab=96.14 E-value=0.007 Score=45.31 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=27.6
Q ss_pred HhhhhcccCCCCCCCHHHHHHHHHHHHHhhcCchHHHHHHHHHhccc
Q 018308 306 CDRATRLVGCNGDLTSEEKQILLAEFSLRHSKSAISIVHEYAKRKET 352 (358)
Q Consensus 306 rqr~~~~~~~~~~Ls~eE~~~l~~~~~~r~~~~~~~i~~~~~~~~~~ 352 (358)
|||..++|+....|++++.+.++++|. .+++.++|++++.
T Consensus 1 RQR~~AGmY~~~~L~~e~~~~lLFEw~-------yP~lA~~cr~kg~ 40 (57)
T PF12105_consen 1 RQRQAAGMYDRPRLSEEEYQRLLFEWG-------YPVLAKWCRRKGL 40 (57)
T ss_dssp HHHHHTTTTSS-SS-HHHHHHHHHHHH-------HHHH---------
T ss_pred ChhhhcCCCCCCCcCHHHHHHHHHccc-------CHHHHhhcccccc
Confidence 799999999999999999999999997 9999999999873
No 22
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=95.62 E-value=0.00027 Score=54.39 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=34.6
Q ss_pred CCcHHHHHHhH-cCCcchhhhhhcccccccCCCcchhhhhhccCCCCccccccCCCeeeCcHHHHHhcCCCcc
Q 018308 72 TPSKDNVEKLL-TNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYLDRYKCGDVYLSSSEVVEALSPYLM 143 (358)
Q Consensus 72 ~~g~~av~all-~~p~~I~rL~~~~~~~~~~~~~~~~~~LA~~~~~~~~~~~~~~~~~~~~q~v~~~l~~~~~ 143 (358)
.||.|+|.+++ .+++ |.++|++++..+.++. +.++.+. +...+ ++.++..++..++++..
T Consensus 2 ieG~~~V~eaL~~~~~-i~~l~~~~~~~~~~~~-~i~~~~~-~~~i~---------v~~v~~~~l~~ls~~~~ 62 (76)
T PF08032_consen 2 IEGRHAVEEALKSGPR-IKKLFVTEEKADKRIK-EILKLAK-KKGIP---------VYEVSKKVLDKLSDTEN 62 (76)
T ss_dssp EESHHHHHHHHHCTGG-EEEEEEETT---CCTH-HHHHHHH-HCT-E---------EEEE-HHHHHHCTTTSS
T ss_pred EEEHHHHHHHHcCCCC-ccEEEEEcCccchhHH-HHHHHHH-HcCCe---------EEEeCHHHHHHHcCCCC
Confidence 48999999999 5556 9999999985553433 2333332 22211 34455566666665443
No 23
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=95.38 E-value=0.13 Score=51.45 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=79.3
Q ss_pred HHHHHHHhCCCEEEEecCCCccccchh--hhhcCCCceeEeEEEeCChHHHHHHHHHcCceEEEeecCCCceeecc----
Q 018308 177 TFRSADALGVQSVHVVSCDSSKRYREN--RHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYD---- 250 (358)
Q Consensus 177 IlRTA~afGv~~Vii~~~~~~~~~~~~--~r~S~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~Ivat~~~~~~~~l~~---- 250 (358)
+.-||-|||++++++.+.+ ......+ .-..-|+.|++.. ..++...++.. .| .|+.++.=+ .++.+
T Consensus 21 v~l~ara~ga~~~~~~~~d-~~~~~~~~~v~~~~gg~f~~~~--~~~~~~~~~~~--~g-~vvhltmyg--~~~~~~~~~ 92 (339)
T PRK12703 21 VALTARAFGASSILVDERD-ETLENTIKKVVDNFGGSFEIKT--GIEWKSEFKKF--HG-IRVHLTMYG--RPIEDVIDE 92 (339)
T ss_pred HHHHHHHhcCCeeEecCCc-HhHHHHHHHHHHhcCCCeEEEe--ccCHHHHHHhc--CC-EEEEEecCC--CchHHHHHH
Confidence 5568899999999766432 1111222 2345688887664 46777777666 35 888888743 23333
Q ss_pred cC-CCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018308 251 MD-WSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (358)
Q Consensus 251 ~~-~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~r 306 (358)
+. ...+..+|+|.|. ++.++-+.||+.|.|---+.-+ ..|.||+|-.++.
T Consensus 93 i~~~~~~~~~vvg~~k--vp~~~y~~ad~nv~v~~qphse----vaala~fld~~~~ 143 (339)
T PRK12703 93 IRESGKDVMVLVGSEK--VPIEAYEIADYNVSVTNQPISE----VSALAIFLDRYFD 143 (339)
T ss_pred HhccCCCEEEEECCCc--CCHHHHhhcccceeeCCCChHH----HHHHHHHHHHhcc
Confidence 33 3468999999997 9999999999999986543332 3577888888874
No 24
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=94.68 E-value=0.19 Score=42.27 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=60.4
Q ss_pred eEEEeCChHHHHHHHHHcCceEEEeecCCC-ceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEEC-CCCCCCccc
Q 018308 215 DIELWDAPRECFNVLRSRGYRIATTHVGMD-AISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIP-MKGMVDSFN 292 (358)
Q Consensus 215 ~v~~~~nl~~~l~~Lk~~G~~Ivat~~~~~-~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IP-m~G~veSLN 292 (358)
+++..+++.|+++-|+ ...|+..+..+. ...+..+...++++|||+....|+|+..++.-+. ++|. +...+.
T Consensus 21 ~livlpdl~DAiEvl~--p~~V~~i~~~~~~~~~~~~~~~~~rvllVf~G~d~gfsk~El~~g~~-v~~~~v~~~iG--- 94 (106)
T PF09895_consen 21 SLIVLPDLKDAIEVLK--PDVVYLISRSGEEEEKLEFLKIEGRVLLVFSGSDPGFSKIELELGEA-VYIRGVERDIG--- 94 (106)
T ss_pred cEEEeCCHHHHHHhcC--CcEEEEEcCcccccccccccCcCCcEEEEEeCCCCCCChhHhcCCce-EEeeccCcCcC---
Confidence 6677899999999997 557777765432 2334456678899999999999999999998654 5553 333333
Q ss_pred HHHHHHHHHHHH
Q 018308 293 VSVAAGILMHHA 304 (358)
Q Consensus 293 VSvAaaIlLye~ 304 (358)
---.+||+||++
T Consensus 95 ~~g~~ai~Ly~L 106 (106)
T PF09895_consen 95 PIGEAAIILYEL 106 (106)
T ss_pred hHHHHHHHHhcC
Confidence 345678888863
No 25
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=90.97 E-value=0.55 Score=40.23 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=54.5
Q ss_pred CCceeEeEEEeCChHHHHHHHHHcCceEEEeecCCCceeeccc----C-CCCCEEEEEcCCCCCCCHHHHhcCCcEEEEC
Q 018308 209 GAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDM----D-WSCPTAIVVGNENRGVSDEALSLSDLRCSIP 283 (358)
Q Consensus 209 Ga~~~v~v~~~~nl~~~l~~Lk~~G~~Ivat~~~~~~~~l~~~----~-~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IP 283 (358)
|+.|.+ ....++...++..|+.|..++.++.=+ .++.+. . -..+..+|+|.|. ++.++-+.||..|.|-
T Consensus 2 GG~F~v--e~~~~w~~~i~~wK~~~G~VVHLTMYG--~~i~dvi~~Ir~~~~~~lvVVGaeK--VP~evYe~ADyNVaVg 75 (120)
T PF01994_consen 2 GGDFEV--EYGVSWKSYIREWKEKGGKVVHLTMYG--ENIDDVIDEIRESCKDLLVVVGAEK--VPGEVYELADYNVAVG 75 (120)
T ss_dssp -S--EE--EEES-HHHHHHC----SSEEEEE-TTS--EEHHHCHHHHHHCTSEEEEEE-SS-----CCHHHHSSEEEESS
T ss_pred CCCEEE--EECCCHHHHHHHhcccCCeEEEEEecC--CchHHHHHHHhccCCCEEEEECCCc--CCHHHHhhCCcceeeC
Confidence 445554 345799999999999999999999754 444443 3 4578999999997 9999999999999986
Q ss_pred CCCCCCcccHHHHHHHHHHHHHH
Q 018308 284 MKGMVDSFNVSVAAGILMHHAVC 306 (358)
Q Consensus 284 m~G~veSLNVSvAaaIlLye~~r 306 (358)
--+.-+ ..|.||+|-.++.
T Consensus 76 nQPHSE----VAALAvFLDrl~~ 94 (120)
T PF01994_consen 76 NQPHSE----VAALAVFLDRLFE 94 (120)
T ss_dssp SS---H----HHHHHHHHHHHCT
T ss_pred CCChHH----HHHHHHHHHHhcC
Confidence 443332 3577888887764
No 26
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.78 E-value=0.36 Score=43.12 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=84.3
Q ss_pred cHHHHHHHHHHhCCCEEEEecCCCccc--cc---hhhhhcCCCce------eEeEEEe-CChHHHHHHHHH-cCc--eEE
Q 018308 173 NVSATFRSADALGVQSVHVVSCDSSKR--YR---ENRHVSMGAEK------WLDIELW-DAPRECFNVLRS-RGY--RIA 237 (358)
Q Consensus 173 NlGaIlRTA~afGv~~Vii~~~~~~~~--~~---~~~r~S~Ga~~------~v~v~~~-~nl~~~l~~Lk~-~G~--~Iv 237 (358)
.+-.|.|+|..+.+++..++.+-.+.. .. ...+...|... .+.+... .++++.+++..+ .|- -|+
T Consensus 30 D~HDIaR~artYeikgYyiV~pidAQ~~~~~r~i~yW~~g~G~~yNp~R~e~~~lv~l~~~le~ViEdIEk~eG~rPLi~ 109 (190)
T COG4752 30 DLHDIARPARTYEIKGYYIVQPIDAQRIVIQRQINYWLSGEGRKYNPTRYEIVQLVRLAYTLEEVIEDIEKEEGRRPLIV 109 (190)
T ss_pred cHhhhcccccceeeccEEEEeecHHHHHHHHHHHHHHhcccCCcCCcCHHHHHHHHhHHHHHHHHHHHHHhhcCCCceEE
Confidence 466789999999999998887532111 00 11234444431 1122211 245566666543 454 377
Q ss_pred EeecC--CCceeeccc-----CCCCCEEEEEcCCCCCCCHHHHhcCCcEE-EECCCCCCCcccHHHHHHHHHHHHH
Q 018308 238 TTHVG--MDAISVYDM-----DWSCPTAIVVGNENRGVSDEALSLSDLRC-SIPMKGMVDSFNVSVAAGILMHHAV 305 (358)
Q Consensus 238 at~~~--~~~~~l~~~-----~~~~~~aLV~GnE~~GLs~e~l~~cD~~v-~IPm~G~veSLNVSvAaaIlLye~~ 305 (358)
+|+.. .++.++..+ .-.+|..++||. |+||++|+++..|+++ -|-..+...-|.|-.|+||+|--++
T Consensus 110 ~TsAr~~~N~isy~~lr~~I~e~dkp~LilfGT-GwGlpde~m~~sDYiLEPIra~sd~NHLSVRaAvAIIlDRLf 184 (190)
T COG4752 110 GTSARTYPNTISYSWLRNEIQERDKPWLILFGT-GWGLPDELMNTSDYILEPIRAASDWNHLSVRAAVAIILDRLF 184 (190)
T ss_pred eccccccCCcccHHHHHHHHhhcCCcEEEEecC-CCCCCHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHHh
Confidence 77753 222333222 235789999996 8999999999999976 3444567788999999999998776
No 27
>KOG0838 consensus RNA Methylase, SpoU family [RNA processing and modification]
Probab=88.28 E-value=0.05 Score=52.34 Aligned_cols=51 Identities=27% Similarity=0.175 Sum_probs=43.3
Q ss_pred CCCCEEEEEcCCCCCCCHHHHh---cCCcEEEECCCC-CCCcccHHHHHHHHHHHH
Q 018308 253 WSCPTAIVVGNENRGVSDEALS---LSDLRCSIPMKG-MVDSFNVSVAAGILMHHA 304 (358)
Q Consensus 253 ~~~~~aLV~GnE~~GLs~e~l~---~cD~~v~IPm~G-~veSLNVSvAaaIlLye~ 304 (358)
...++.+|-||+ .++|+...+ -|+..+.|++.+ ..++|||++|+||.++..
T Consensus 136 g~~~v~lv~~n~-s~lS~~vskss~gale~l~I~q~~~~~efl~vsvaaG~~l~~t 190 (271)
T KOG0838|consen 136 GADGVLLVKGNS-SPLSPVVSKSSAGALEVLPIRQVDNPLEFLNVSVAAGIRLHGT 190 (271)
T ss_pred cCCceEEEeccC-CCCchhHHHhhhchhheeeHHHcCCHHHHHHHHHhCceEEEEe
Confidence 467899999999 888888775 457889999976 689999999999988874
No 28
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=85.47 E-value=2.5 Score=38.17 Aligned_cols=123 Identities=15% Similarity=0.212 Sum_probs=80.0
Q ss_pred HHHHHHHHhCCCEEEEecCCCccccc--h--------------hhhhcCCCc-eeEeEEEeCChHHHHHHHHHcCceEEE
Q 018308 176 ATFRSADALGVQSVHVVSCDSSKRYR--E--------------NRHVSMGAE-KWLDIELWDAPRECFNVLRSRGYRIAT 238 (358)
Q Consensus 176 aIlRTA~afGv~~Vii~~~~~~~~~~--~--------------~~r~S~Ga~-~~v~v~~~~nl~~~l~~Lk~~G~~Iva 238 (358)
.|-|.+.+|++..+++...+..+.+. . ..+-|-|-. ..+|+..+ ++-..+.+ ..|-.++.
T Consensus 22 rIGRaaQ~FEV~eLiiap~~~vda~eL~~Fl~gV~~G~eSRy~iQ~ksY~r~v~kvpV~V~-DlYQ~vRd--R~~~~lIv 98 (173)
T PF14419_consen 22 RIGRAAQAFEVKELIIAPKEKVDAYELMEFLRGVREGQESRYQIQRKSYGREVRKVPVYVQ-DLYQVVRD--RKGEPLIV 98 (173)
T ss_pred HHhHHHhhcchheEEEeccCccCHHHHHHHHHHHHHhHHHHHHHHHHhcCCeeeEeeeeHH-HHHHHHHh--cCCCeEEE
Confidence 36799999999999877665555432 1 112333433 66888764 56666665 36778999
Q ss_pred eecCCCceeeccc--------CCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCc-ccHHHHHHHHHHHHH
Q 018308 239 THVGMDAISVYDM--------DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDS-FNVSVAAGILMHHAV 305 (358)
Q Consensus 239 t~~~~~~~~l~~~--------~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veS-LNVSvAaaIlLye~~ 305 (358)
|++.++ ++.++ ...+.+.+++|+ ..|++.-+...||..+-+-- |.+-| =-+.-|+.|+|+..+
T Consensus 99 tdPkG~--~is~vk~~L~~~~r~~~eV~v~iGS-ReGiP~GlfRfAd~VvDlaP-~~t~aTe~~ipsaliAl~~v~ 170 (173)
T PF14419_consen 99 TDPKGD--PISEVKDKLAEDLRYAKEVVVFIGS-REGIPRGLFRFADYVVDLAP-GVTFATEHAIPSALIALWTVY 170 (173)
T ss_pred ECCCCC--cHHHHHHHHHHHHhhCcEEEEEEEc-ccCCChhHHHHhhhhhhcCC-ceEEeehhhhHHHHHHHHHHH
Confidence 999764 33332 345678888897 68999999999999875543 22323 334445556666654
No 29
>PRK02135 hypothetical protein; Provisional
Probab=85.23 E-value=2.4 Score=39.57 Aligned_cols=80 Identities=13% Similarity=0.176 Sum_probs=65.1
Q ss_pred eCChHHHHHHHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcC----CcEEEECCCCCCCcccHH
Q 018308 219 WDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLS----DLRCSIPMKGMVDSFNVS 294 (358)
Q Consensus 219 ~~nl~~~l~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~c----D~~v~IPm~G~veSLNVS 294 (358)
..++++.++++ ..|+++|-++.++ .++.+..++...++|+| ...|++++..+.- +..++|- -.+|=.+
T Consensus 113 ~~~fe~ll~~~-~e~~~l~~L~e~G--~~i~~~~~~~~~~FvLg-DH~~~~~ee~~~L~~~ga~~iSlG----P~~l~As 184 (201)
T PRK02135 113 RRGFEDLLEEL-AEGKTLYYLHEDG--EDIRDVEFPENPVFVLG-DHIGFTEEEENLLKRLGAEKISLG----PKMLHAD 184 (201)
T ss_pred cCCHHHHHHHH-hcCCcEEEEeCCC--CchhhccCCCCCEEEEe-CCCCCCHHHHHHHHHhCCeEEEeC----cHHHHHH
Confidence 37889999999 7899999999875 57888888888889999 6899999877543 4566662 4589999
Q ss_pred HHHHHHHHHHHH
Q 018308 295 VAAGILMHHAVC 306 (358)
Q Consensus 295 vAaaIlLye~~r 306 (358)
++..++-+|+=+
T Consensus 185 hcI~~vhn~LD~ 196 (201)
T PRK02135 185 HCITLIHNELDR 196 (201)
T ss_pred HHHHHHHHHHhh
Confidence 999999998854
No 30
>PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus. The function of these bacterial protein is unknown, however, they do contain several conserved histidines and aspartates that might form a metal-binding site.; PDB: 2QMM_A 3AIA_A 3AI9_X 2QWV_B.
Probab=80.36 E-value=8.4 Score=35.94 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=56.7
Q ss_pred eCChHHHHHHHHHcCceEEEeecCCCceeecccCCCC-CEEEEEcCCCCCCCHHHHhcC----CcEEEECCCCCCCcccH
Q 018308 219 WDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSC-PTAIVVGNENRGVSDEALSLS----DLRCSIPMKGMVDSFNV 293 (358)
Q Consensus 219 ~~nl~~~l~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~-~~aLV~GnE~~GLs~e~l~~c----D~~v~IPm~G~veSLNV 293 (358)
..++++.++++++. +++|-++.++ .++.++.++. ..++|+| ...|++++..+.- +..|+|- -.||=.
T Consensus 112 ~~~fe~ll~~~~~~-~~l~~L~e~G--~di~~~~~~~~d~~FVLg-DH~g~~~eee~~L~~~~a~kiSlG----P~~lhA 183 (199)
T PF04013_consen 112 KGGFEDLLEELAEE-YPLYYLHEDG--EDIRDVEFPGNDPVFVLG-DHIGFTEEEEELLERLGAEKISLG----PKSLHA 183 (199)
T ss_dssp ---HHHHHHHHHCT-SEEEEESTTS--EEGGGS---S-SEEEEEE--TT-SHHHHHHHHHCTTSEEEES-----SS---H
T ss_pred cCCHHHHHHHHhcC-CcEEEEcCCC--CcHhhcccCCCCCeEEEe-CCCCCCHHHHHHHHHccCceEEeC----CHHHHH
Confidence 36889999999877 9999998765 7899999998 8999999 5899998865533 5566663 358999
Q ss_pred HHHHHHHHHHHHHh
Q 018308 294 SVAAGILMHHAVCD 307 (358)
Q Consensus 294 SvAaaIlLye~~rq 307 (358)
+++..|+-+|+-+.
T Consensus 184 dhcI~ivhn~LD~~ 197 (199)
T PF04013_consen 184 DHCITIVHNELDRR 197 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998543
No 31
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=79.95 E-value=9.6 Score=35.55 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=60.2
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCc-c-cc-----------chhhhhc--CCCceeEe-EEEeCChHHH
Q 018308 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSS-K-RY-----------RENRHVS--MGAEKWLD-IELWDAPREC 225 (358)
Q Consensus 162 ~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~-~-~~-----------~~~~r~S--~Ga~~~v~-v~~~~nl~~~ 225 (358)
+.++-.+-.+..+--+++-|.-+||+.++.+...-. . .+ .+....| .....++| +....++.++
T Consensus 63 i~L~~al~K~~~~d~il~katELGv~~i~p~~s~rsv~k~~~~~~~~k~~R~~~i~~eA~kQs~r~~~P~i~~~~~l~~~ 142 (225)
T PF04452_consen 63 ITLAQALPKGDRMDWILQKATELGVSRIIPVISERSVVKSDGKKSDKKLERWQRIAIEAAKQSGRTRLPEIEPPISLKEL 142 (225)
T ss_dssp EEEEEE--STTHHHHHHHHHHHTT-SEEEEEE-TTSSS---HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEEEEEHHHH
T ss_pred EEEEEEEEcCccHHHHHHHHHhcCCCEEEEEEeeeeeeeccchhhHHHHHHHHHHHHHHHHhcCCCccceeeccccHHHH
Confidence 556678888899999999999999999987754322 1 10 0111111 12223455 4455688888
Q ss_pred HHHHHHcCceEEEeecCCCceeecccC--CCC----CEEEEEcCCCCCCCHHHHhcCCc
Q 018308 226 FNVLRSRGYRIATTHVGMDAISVYDMD--WSC----PTAIVVGNENRGVSDEALSLSDL 278 (358)
Q Consensus 226 l~~Lk~~G~~Ivat~~~~~~~~l~~~~--~~~----~~aLV~GnE~~GLs~e~l~~cD~ 278 (358)
++....... +..+..+. ..+..+. ... ++++++|.|| |.|++.++..-.
T Consensus 143 l~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~~~~ 197 (225)
T PF04452_consen 143 LEDIPDEDL--LILDEDEE-PSLSSLSEILNSEKSFSIAIIIGPEG-GFSEEEIEFLKE 197 (225)
T ss_dssp HHHSSECSE--EEE-TTTT-CBGGGCSHTTSCHHC-EEEEEE--TT----HHHHHHHHH
T ss_pred hhccccCCE--EEEccccc-ccccchhhhhhcccCCcEEEEECCCC-CCCHHHHHHHHH
Confidence 877765544 33443321 2222221 122 8899999997 999998876543
No 32
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.61 E-value=16 Score=34.98 Aligned_cols=124 Identities=10% Similarity=0.103 Sum_probs=74.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCC-Cccc-c-------chhhh----hcCC-CceeEe-EEEeCChHHH
Q 018308 161 VCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCD-SSKR-Y-------RENRH----VSMG-AEKWLD-IELWDAPREC 225 (358)
Q Consensus 161 l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~-~~~~-~-------~~~~r----~S~G-a~~~v~-v~~~~nl~~~ 225 (358)
.+-+.-.+-.+.++=.|++-|.-+|+..++.+... |.-. . ....+ ++.- .-.++| |....++.++
T Consensus 79 ~i~l~~~i~kg~k~d~iiqkatELGv~~i~p~~ter~~~k~~~~~~~kler~~ki~ieAaEQs~R~~vP~I~~~~~~~~~ 158 (246)
T COG1385 79 KITLAQAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDGKKAAKLERWQKIAIEAAEQSGRNVVPEIKPPESLKEL 158 (246)
T ss_pred eEEEEEEcCccHHHHHHHHHHHHhCcceEEEEeeeeeEEeccccchhHHHHHHHHHHHHHHhcCCCcCCeeechhhHHHH
Confidence 34566788899999999999999999999866421 1111 0 11112 2222 223455 4455677777
Q ss_pred HHHHHHcCceEEEeecCCCceeeccc-----CCCCCEEEEEcCCCCCCCHHHHhcCCc--EEEECCCC
Q 018308 226 FNVLRSRGYRIATTHVGMDAISVYDM-----DWSCPTAIVVGNENRGVSDEALSLSDL--RCSIPMKG 286 (358)
Q Consensus 226 l~~Lk~~G~~Ivat~~~~~~~~l~~~-----~~~~~~aLV~GnE~~GLs~e~l~~cD~--~v~IPm~G 286 (358)
++......+..+....... ...... ...+++++++|.|| |+|++.++..-. ...|++..
T Consensus 159 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~iiIGPEG-Gfs~~Ei~~l~~~g~~~v~LGp 224 (246)
T COG1385 159 LKEIDDEDALKLIYEEKAK-EGLLALPLLEALPEGKVLLIIGPEG-GFSEDEIELLREAGFTPVSLGP 224 (246)
T ss_pred HHhcccchhhhheeccccc-cccccchhhhcccCCcEEEEECCCC-CCCHHHHHHHHHCCCeEeccCC
Confidence 7777644433333333221 122222 35789999999997 999998875532 34555543
No 33
>PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional
Probab=70.50 E-value=39 Score=31.73 Aligned_cols=107 Identities=13% Similarity=0.128 Sum_probs=61.1
Q ss_pred EEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccc-c---------c---h-hhhhcC-CCceeEeEE-EeCChHHHH
Q 018308 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKR-Y---------R---E-NRHVSM-GAEKWLDIE-LWDAPRECF 226 (358)
Q Consensus 163 vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~-~---------~---~-~~r~S~-Ga~~~v~v~-~~~nl~~~l 226 (358)
.++-.+-.+..+--+++.|.-+||+.++.+....... + . + +..++. ..--|+|-+ ...++.+.+
T Consensus 77 ~l~~al~k~~~~e~il~k~tELGV~~i~p~~sers~~~~~~~~~~~k~~r~~~i~~~A~~Qs~r~~~P~i~~~~~~~~~l 156 (234)
T PRK11713 77 TLAQALPKGDRLELILQKATELGVSAIIPLISERSVVKLDGERADKKLERWQKIAIEAAEQSGRTRIPEVRPPISLKEFL 156 (234)
T ss_pred EEEEeecCCccHHHHHHHHHHhCcCeEEEEEeccceecccchhhHHHHHHHHHHHHHHHHhcCCCCCCEEcCcCCHHHHH
Confidence 3444567889999999999999999998875322111 0 1 1 111221 223466644 335666666
Q ss_pred HHHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCC
Q 018308 227 NVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSD 277 (358)
Q Consensus 227 ~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD 277 (358)
+..... .+ .. .....++. .-.+++++++|.|| |.+++.++...
T Consensus 157 ~~~~~~--~~--~~--~~~~~l~~-~~~~~i~viIGPEG-Gfs~~Ei~~l~ 199 (234)
T PRK11713 157 EELLPA--DL--KA--GLKLVLHP-EAGGKVLLLIGPEG-GFSPEEIELLR 199 (234)
T ss_pred hhcccc--cc--ch--hhhhhcCc-CCCCeEEEEECCCC-CCCHHHHHHHH
Confidence 544321 11 00 00111111 12246899999997 99999887653
No 34
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=67.37 E-value=55 Score=30.87 Aligned_cols=120 Identities=12% Similarity=0.082 Sum_probs=67.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCC-Ccccc--------c---h-hhhhcC-CCceeEeEE-EeCChHHHH
Q 018308 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSCD-SSKRY--------R---E-NRHVSM-GAEKWLDIE-LWDAPRECF 226 (358)
Q Consensus 162 ~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~-~~~~~--------~---~-~~r~S~-Ga~~~v~v~-~~~nl~~~l 226 (358)
+.++-.+-.+..+=-|++-|--+||+.++.+... +...+ . + +..++. ..--|+|.+ ...++.+++
T Consensus 78 i~l~~al~K~~~~d~il~katELGv~~i~p~~s~rs~~~~~~~~~~k~~rw~~i~~eA~~Q~~r~~lP~i~~~~~l~~~l 157 (240)
T TIGR00046 78 IHLAIVLIKGKKMEFIIRKLTELGVSKIIPFNAERSVVKLDIEAIKKLERWQKIAIEAAEQSGRNIVPEIKPPKNLKEKC 157 (240)
T ss_pred EEEEEeecCCccHHHHHHHHHHcCCCEEEEEEeccceeccCchHHHHHHHHHHHHHHHHHhcCCCCCCEECCcCCHHHHH
Confidence 3444566778999999999999999999877432 21111 1 1 111221 223466644 335677776
Q ss_pred HHHHHcCceEEEeecCCCceeecccC-CCCCEEEEEcCCCCCCCHHHHhcCCc--EEEECC
Q 018308 227 NVLRSRGYRIATTHVGMDAISVYDMD-WSCPTAIVVGNENRGVSDEALSLSDL--RCSIPM 284 (358)
Q Consensus 227 ~~Lk~~G~~Ivat~~~~~~~~l~~~~-~~~~~aLV~GnE~~GLs~e~l~~cD~--~v~IPm 284 (358)
+.....+..++. +.+. ......+. ..+++++++|.|| |.|++.++.+.. ...+.+
T Consensus 158 ~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~v~~~IGPEG-Gfs~~Ei~~~~~~gf~~vsL 215 (240)
T TIGR00046 158 AEAYEEALKLNF-HPEA-SPLSANLPIPAGNIVIIIGPEG-GFSEKEIQLLKEKGFTPVLL 215 (240)
T ss_pred hhCcCCCeEEEE-CCcc-cchhhhhccCCCcEEEEECCCC-CCCHHHHHHHHHCCCEEEcc
Confidence 654322222333 3221 11112221 1246999999997 999999886643 244444
No 35
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=51.59 E-value=73 Score=29.51 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=64.8
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccch----------------------hhhhcCCCceeEeEE
Q 018308 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRE----------------------NRHVSMGAEKWLDIE 217 (358)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~----------------------~~r~S~Ga~~~v~v~ 217 (358)
..++.+| .|+.=+..+-|.|+.||++++.++....++.... ..+.-.|+.--++..
T Consensus 59 ~~v~AIe--~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 59 GRVIAIE--RDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred ceEEEEe--cCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEee
Confidence 3456666 5788889999999999999999886544322111 011234455556777
Q ss_pred EeCChHHHHHHHHHcCc-eEEEeecCCCceeecc---cCCCCCEEEEEcC
Q 018308 218 LWDAPRECFNVLRSRGY-RIATTHVGMDAISVYD---MDWSCPTAIVVGN 263 (358)
Q Consensus 218 ~~~nl~~~l~~Lk~~G~-~Ivat~~~~~~~~l~~---~~~~~~~aLV~Gn 263 (358)
...+...+++.+++.|+ .++-..... +..+.. +.-..|+.++.|-
T Consensus 137 tlE~~~~a~~~~~~~g~~ei~~v~is~-~~~lg~~~~~~~~nPv~i~~g~ 185 (187)
T COG2242 137 TLETLAKALEALEQLGGREIVQVQISR-GKPLGGGTMFRPVNPVFIISGV 185 (187)
T ss_pred cHHHHHHHHHHHHHcCCceEEEEEeec-ceeccCeeEeecCCCEEEEEEe
Confidence 77888999999999999 555444322 233332 2334577777663
No 36
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=45.00 E-value=66 Score=26.87 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=35.4
Q ss_pred ccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCChHHHHHHHHHcCceEEE
Q 018308 159 YSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIAT 238 (358)
Q Consensus 159 ~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~Iva 238 (358)
.+++++. ..|..+..+++-|.+.|++.+++... ..-.++++.+++.|.++++
T Consensus 56 iDlavv~---~~~~~~~~~v~~~~~~g~~~v~~~~g-------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 56 IDLAVVC---VPPDKVPEIVDEAAALGVKAVWLQPG-------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp -SEEEE----S-HHHHHHHHHHHHHHT-SEEEE-TT-------------------------S--HHHHHHHHHTT-EEEE
T ss_pred CCEEEEE---cCHHHHHHHHHHHHHcCCCEEEEEcc-------------------------hHHHHHHHHHHHcCCEEEe
Confidence 3556665 67899999999999999999987643 3445777888888888775
No 37
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=44.02 E-value=45 Score=29.70 Aligned_cols=66 Identities=9% Similarity=0.120 Sum_probs=44.0
Q ss_pred ceEEEeecCCCceeecccCC----------CCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHH
Q 018308 234 YRIATTHVGMDAISVYDMDW----------SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHH 303 (358)
Q Consensus 234 ~~Ivat~~~~~~~~l~~~~~----------~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye 303 (358)
-.+++++..+.. +....| ...+++|+|. ..|+++++++.||..+++.- + .++=-.|--|++-+
T Consensus 66 ~~~i~LDe~Gk~--~sS~~fA~~l~~~~~~g~~i~FvIGG-a~G~~~~v~~~a~~~lSLS~--m--TfpH~larlvL~EQ 138 (153)
T TIGR00246 66 AHVVTLDIPGKP--WTTPQLADTLEKWKTDGRDVTLLIGG-PEGLSPTCKAAAEQSWSLSK--L--TLPHPLVRVIVAES 138 (153)
T ss_pred CeEEEEcCCCCc--CCHHHHHHHHHHHhccCCeEEEEEcC-CCcCCHHHHHhcCceEEeec--C--CCcHHHHHHHHHHH
Confidence 457788876542 322211 2359999996 68999999999999887642 1 34445566666666
Q ss_pred HHH
Q 018308 304 AVC 306 (358)
Q Consensus 304 ~~r 306 (358)
++|
T Consensus 139 iYR 141 (153)
T TIGR00246 139 LYR 141 (153)
T ss_pred HHH
Confidence 665
No 38
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=43.60 E-value=22 Score=31.71 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=37.4
Q ss_pred cCceEEEeecCCCceeecccCC-----------CCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHH
Q 018308 232 RGYRIATTHVGMDAISVYDMDW-----------SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGIL 300 (358)
Q Consensus 232 ~G~~Ivat~~~~~~~~l~~~~~-----------~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIl 300 (358)
.+-.+++++..+. .+....| ...++|++|. ..|+++++++.||..+++.- . .+.=-.|-.|+
T Consensus 66 ~~~~~i~Ld~~Gk--~~sS~~fA~~l~~~~~~g~~~i~F~IGG-~~G~~~~~~~~a~~~lSLS~--m--TfpH~larlvL 138 (155)
T PF02590_consen 66 PNDYVILLDERGK--QLSSEEFAKKLERWMNQGKSDIVFIIGG-ADGLSEEVRKRADEKLSLSK--M--TFPHQLARLVL 138 (155)
T ss_dssp TTSEEEEE-TTSE--E--HHHHHHHHHHHHHTTS-EEEEEE-B-TTB--HHHHHH-SEEEES-S--S-----HHHHHHHH
T ss_pred CCCEEEEEcCCCc--cCChHHHHHHHHHHHhcCCceEEEEEec-CCCCCHHHHhhcCceEEEec--C--CCcHHHHHHHH
Confidence 4667888887753 3333322 2368999996 67999999999998877642 1 23334455556
Q ss_pred HHHHHH
Q 018308 301 MHHAVC 306 (358)
Q Consensus 301 Lye~~r 306 (358)
+-+++|
T Consensus 139 ~EQiYR 144 (155)
T PF02590_consen 139 LEQIYR 144 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 39
>PF04407 DUF531: Protein of unknown function (DUF531); InterPro: IPR007501 This is a family of hypothetical archaeal proteins.
Probab=42.31 E-value=43 Score=30.40 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=40.4
Q ss_pred CCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHH
Q 018308 254 SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHH 303 (358)
Q Consensus 254 ~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye 303 (358)
.++..|++|--.+||+.++.+.+.+.+-|- |.-=||--..|.|++-..
T Consensus 119 ~~s~~~liGLGR~GLPkei~k~a~yHLDIT--gkgiSLETCTAiG~Ipa~ 166 (173)
T PF04407_consen 119 GKSFLLLIGLGRHGLPKEIFKMAKYHLDIT--GKGISLETCTAIGAIPAR 166 (173)
T ss_pred CCceEEEEecCCCCCcHHHHHhchhceeec--CCceeeehhhHHhhHHHH
Confidence 357889999999999999999999988887 666699988888877443
No 40
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=39.90 E-value=69 Score=27.73 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHHHHHHhhhh
Q 018308 291 FNVSVAAGILMHHAVCDRAT 310 (358)
Q Consensus 291 LNVSvAaaIlLye~~rqr~~ 310 (358)
+=-+||+++++||.+|++..
T Consensus 83 fiF~Va~~li~~E~~Rs~~k 102 (134)
T PF07047_consen 83 FIFSVAAGLIIYEYWRSARK 102 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33459999999999987654
No 41
>COG1901 Uncharacterized conserved protein [Function unknown]
Probab=38.70 E-value=3.2e+02 Score=25.50 Aligned_cols=80 Identities=13% Similarity=0.129 Sum_probs=59.0
Q ss_pred CChHHHHHHHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHh----cCCcEEEECCCCCCCcccHHH
Q 018308 220 DAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALS----LSDLRCSIPMKGMVDSFNVSV 295 (358)
Q Consensus 220 ~nl~~~l~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~----~cD~~v~IPm~G~veSLNVSv 295 (358)
...++.+..+ .+|+.+|.++.++ .++.++++....++|+|- ..|++++..+ .++..|++- --||=.++
T Consensus 112 ~~~e~ll~~l-~~~~~ly~L~E~G--~DI~~v~~~~np~FIlGD-H~g~t~e~~k~L~r~~~~~ISlG----P~~lha~h 183 (197)
T COG1901 112 GGFEALLAEL-AEGRSLYYLHEDG--RDISEVDLIPNPVFILGD-HIGLTEEDEKLLERHAAKKISLG----PLSLHADH 183 (197)
T ss_pred CCHHHHHHHH-hccCcEEEEccCC--ccHhhcccCCCceEEeeC-CCCCCHHHHHHHHHhhCceeEeC----chHHHHHH
Confidence 4566666666 4678999998765 578899888888999995 7899998664 455555552 23788888
Q ss_pred HHHHHHHHHHHh
Q 018308 296 AAGILMHHAVCD 307 (358)
Q Consensus 296 AaaIlLye~~rq 307 (358)
+..++=+++-+|
T Consensus 184 cit~~h~~LD~~ 195 (197)
T COG1901 184 CITLLHNLLDRQ 195 (197)
T ss_pred HHHHHHHHHhhc
Confidence 888888877655
No 42
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=38.35 E-value=1.6e+02 Score=26.26 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=46.0
Q ss_pred CceEEEeecCCCceeecccCC---------C--CCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHH
Q 018308 233 GYRIATTHVGMDAISVYDMDW---------S--CPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301 (358)
Q Consensus 233 G~~Ivat~~~~~~~~l~~~~~---------~--~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlL 301 (358)
+-.++.++..+. .+....| . ..+++|+|. ..|+++++++.||..+++.- + .++=-.|-.|++
T Consensus 67 ~~~~i~LDe~Gk--~~sS~~fA~~l~~~~~~g~~~i~F~IGG-a~G~~~~v~~~a~~~lSLS~--m--TfpH~larlvL~ 139 (157)
T PRK00103 67 GARVIALDERGK--QLSSEEFAQELERWRDDGRSDVAFVIGG-ADGLSPAVKKRADQSLSLSK--L--TLPHQLVRVLLA 139 (157)
T ss_pred CCEEEEEcCCCC--cCCHHHHHHHHHHHHhcCCccEEEEEcC-ccccCHHHHHhcCceEEecc--C--CCcHHHHHHHHH
Confidence 445788887764 3333222 2 369999996 68999999999999887642 1 355556667777
Q ss_pred HHHHH
Q 018308 302 HHAVC 306 (358)
Q Consensus 302 ye~~r 306 (358)
-+++|
T Consensus 140 EQlYR 144 (157)
T PRK00103 140 EQLYR 144 (157)
T ss_pred HHHHH
Confidence 77776
No 43
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=37.13 E-value=1.7e+02 Score=26.44 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=33.7
Q ss_pred HHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEec
Q 018308 149 RFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193 (358)
Q Consensus 149 ~i~~v~~~r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~ 193 (358)
.+++.++.....+.++.+.-.|+...-..++.+-.-|+++|++..
T Consensus 19 g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~ 63 (257)
T PF13407_consen 19 GAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSP 63 (257)
T ss_dssp HHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEES
T ss_pred HHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecC
Confidence 445555544444444469999999999999999999999997654
No 44
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=36.93 E-value=32 Score=29.25 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=45.1
Q ss_pred CCCCcHHHHHHHHH---HhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCChHHHHHHHHHcCceEEEeec-CCC
Q 018308 169 SDFGNVSATFRSAD---ALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHV-GMD 244 (358)
Q Consensus 169 ~dP~NlGaIlRTA~---afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~Ivat~~-~~~ 244 (358)
|.-+|+|.=++.|. .-|.+.|+++..+++.......+.+.-....-+++..+. .+-||+++|+.. -..
T Consensus 40 Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A~~~L~~~d~VlgPa--------~DGGy~LiG~~~~~~~ 111 (122)
T PF09837_consen 40 QQGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQAFEALQRHDVVLGPA--------EDGGYYLIGLRRRPDP 111 (122)
T ss_dssp --SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHHHHTTT-SEEEEEB--------TTSSEEEEEEEGGG--
T ss_pred cCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHHHhccCCEEEeec--------cCCCEEEEecCCCCCC
Confidence 68899998666554 457999999999888777666666655555556665552 467999999984 211
Q ss_pred ceeecccCCC
Q 018308 245 AISVYDMDWS 254 (358)
Q Consensus 245 ~~~l~~~~~~ 254 (358)
...+.+++|.
T Consensus 112 ~~lF~~i~Ws 121 (122)
T PF09837_consen 112 PALFEGIPWS 121 (122)
T ss_dssp GGGGTT--TT
T ss_pred HHHccCCCCC
Confidence 2345556654
No 45
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=36.01 E-value=32 Score=34.21 Aligned_cols=38 Identities=24% Similarity=0.228 Sum_probs=30.2
Q ss_pred CCCCCcHHHHH--HHHHHhCCCEEEEecCCCccccchhhhh
Q 018308 168 LSDFGNVSATF--RSADALGVQSVHVVSCDSSKRYRENRHV 206 (358)
Q Consensus 168 i~dP~NlGaIl--RTA~afGv~~Vii~~~~~~~~~~~~~r~ 206 (358)
-+++.|+|+|+ |.|+++|+... |++|-.+|......|.
T Consensus 103 G~haSnLGaiiA~~ia~~~gvPay-IVDPvvVDEm~~~Ar~ 142 (358)
T COG3426 103 GEHASNLGAIIANRIAKALGVPAY-IVDPVVVDEMEDVARF 142 (358)
T ss_pred CcchhhhhHHHHHHHhhhcCCCee-eeCceehhhcchhhhh
Confidence 47899999997 88999999998 5788777766654443
No 46
>COG2106 Uncharacterized conserved protein [Function unknown]
Probab=35.49 E-value=39 Score=33.05 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.4
Q ss_pred CcHHHHHHHHHHhCCCEEEEecCCC
Q 018308 172 GNVSATFRSADALGVQSVHVVSCDS 196 (358)
Q Consensus 172 ~NlGaIlRTA~afGv~~Vii~~~~~ 196 (358)
.=+|-|+|+|+-|||+.|++...+.
T Consensus 26 ~Kvg~IARaaaiF~V~eIii~~D~~ 50 (272)
T COG2106 26 YKVGQIARAAAIFRVDEIIIYEDGD 50 (272)
T ss_pred HHHHHHHHHHHhhcccEEEEEeCCC
Confidence 4589999999999999999886543
No 47
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=31.02 E-value=1.9e+02 Score=25.88 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=44.9
Q ss_pred CCCCcHHHHHHHHHHhCCCEEEEe------cCCCccccchhhhhc-CCCceeEeE-EEeCChHHHHHHHHHcCceEEEee
Q 018308 169 SDFGNVSATFRSADALGVQSVHVV------SCDSSKRYRENRHVS-MGAEKWLDI-ELWDAPRECFNVLRSRGYRIATTH 240 (358)
Q Consensus 169 ~dP~NlGaIlRTA~afGv~~Vii~------~~~~~~~~~~~~r~S-~Ga~~~v~v-~~~~nl~~~l~~Lk~~G~~Ivat~ 240 (358)
-|+.|+...++.+...|++.|++. -++.......+.... .... .+.+ +.+.+..+.++.+.+.|...+..+
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~-~v~v~lm~~~~~~~~~~~~~~gadgv~vh 86 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDL-PIDVHLMVENPDRYIEDFAEAGADIITVH 86 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCC-cEEEEeeeCCHHHHHHHHHHcCCCEEEEc
Confidence 467899999999999999999984 111111111121111 1111 1213 344677888999999998776666
Q ss_pred cC
Q 018308 241 VG 242 (358)
Q Consensus 241 ~~ 242 (358)
..
T Consensus 87 ~~ 88 (210)
T TIGR01163 87 PE 88 (210)
T ss_pred cC
Confidence 54
No 48
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.98 E-value=2.5e+02 Score=21.77 Aligned_cols=66 Identities=14% Similarity=0.063 Sum_probs=37.9
Q ss_pred EEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCC----hHHHHHHHHHcCceEEEe
Q 018308 164 VVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDA----PRECFNVLRSRGYRIATT 239 (358)
Q Consensus 164 VLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~n----l~~~l~~Lk~~G~~Ivat 239 (358)
.+.=+..||++..++..-...++..+. |.. ...+....+=.+.+.+ ..+.++.|++.||.+.-.
T Consensus 5 ~v~ipD~PG~L~~ll~~l~~anI~~~~---------y~~---~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~ 72 (85)
T cd04906 5 AVTIPERPGSFKKFCELIGPRNITEFN---------YRY---ADEKDAHIFVGVSVANGAEELAELLEDLKSAGYEVVDL 72 (85)
T ss_pred EEecCCCCcHHHHHHHHhCCCceeEEE---------EEc---cCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEEC
Confidence 333346699999888866633333221 111 1112222222244455 889999999999998755
Q ss_pred ec
Q 018308 240 HV 241 (358)
Q Consensus 240 ~~ 241 (358)
+.
T Consensus 73 ~~ 74 (85)
T cd04906 73 SD 74 (85)
T ss_pred CC
Confidence 43
No 49
>PRK04171 ribosome biogenesis protein; Provisional
Probab=30.58 E-value=1.7e+02 Score=27.91 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=59.1
Q ss_pred ceeEeEEEeCChHHHHHHHHHcC--ceEEEeecCCCceeecccC-CCCCEEEEEcCCCCC-CCHHHHhcCCcEEEECCCC
Q 018308 211 EKWLDIELWDAPRECFNVLRSRG--YRIATTHVGMDAISVYDMD-WSCPTAIVVGNENRG-VSDEALSLSDLRCSIPMKG 286 (358)
Q Consensus 211 ~~~v~v~~~~nl~~~l~~Lk~~G--~~Ivat~~~~~~~~l~~~~-~~~~~aLV~GnE~~G-Ls~e~l~~cD~~v~IPm~G 286 (358)
...+.+.. .++.+.+ ..+ ..+++++..+....+.++- ...++++|+|.=.+| ++.+..+.+|..++|--
T Consensus 127 ~~Llkv~k-~~l~~~l----~~~~~~~~i~lS~~g~~~~~~~~~~~~~~~~~vIGaf~hG~f~~~~~~~~~~~iSIs~-- 199 (222)
T PRK04171 127 EPLLEIEN-KSLEELL----EEIGPDRIILLSEKGELVKPKELGKENENIAVGIGGFPHGDFSEKVLELAKKKYSIYG-- 199 (222)
T ss_pred cchheeec-CcHHHhc----cccCCCcEEEECCCCcccCHHHHhhccCCcEEEEccccCCCcchhhHhhcCeEEEEeC--
Confidence 33455554 3444443 333 6788888766555555543 367899999998888 46677888999999974
Q ss_pred CCCcccHHHHHHHHHHHHH
Q 018308 287 MVDSFNVSVAAGILMHHAV 305 (358)
Q Consensus 287 ~veSLNVSvAaaIlLye~~ 305 (358)
.+|-.+++++-+++++-
T Consensus 200 --~pLsa~~v~~ri~~a~E 216 (222)
T PRK04171 200 --EPLTAWTVVCRVIAAYE 216 (222)
T ss_pred --CChHHHHHHHHHHHHHH
Confidence 47888888888877763
No 50
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=28.68 E-value=1.3e+02 Score=24.80 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHh-----cCCcEEEECCCCC
Q 018308 220 DAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALS-----LSDLRCSIPMKGM 287 (358)
Q Consensus 220 ~nl~~~l~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~-----~cD~~v~IPm~G~ 287 (358)
..+.+..+.|.+.||.|++|.... .-|.+.-.+-..+.-+...+.+-.+.+++ ..|.++.||..|.
T Consensus 13 ~~~~~~a~~l~~~G~~i~aT~gTa--~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~~~~ 83 (116)
T cd01423 13 PELLPTAQKLSKLGYKLYATEGTA--DFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSNRG 83 (116)
T ss_pred hhHHHHHHHHHHCCCEEEEccHHH--HHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCCCCC
Confidence 356677888999999999987542 33443333222221121111211233333 5678888887554
No 51
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.33 E-value=2.4e+02 Score=20.36 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=38.7
Q ss_pred EEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCChHHHHHHHHHcCceE
Q 018308 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRI 236 (358)
Q Consensus 163 vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~I 236 (358)
+.+.-...||++..+++..+..|+.=.-+... . ... . ..|. ..+-+..-.+...+.+.|+++||.+
T Consensus 4 ~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~---~-~~~--~-~~~~-~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 4 LYVDVPDEPGVIAEVTQILGDAGISIKNIEIL---E-IRE--G-IGGI-LRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCceeeEeE---E-eec--C-CcEE-EEEEECCHHHHHHHHHHHHHcCCcC
Confidence 44455678999999999999999874322210 0 000 0 0111 1111111146688999999999964
No 52
>PRK03094 hypothetical protein; Provisional
Probab=26.76 E-value=1.4e+02 Score=23.91 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=19.3
Q ss_pred eCChHHHHHHHHHcCceEEEeec
Q 018308 219 WDAPRECFNVLRSRGYRIATTHV 241 (358)
Q Consensus 219 ~~nl~~~l~~Lk~~G~~Ivat~~ 241 (358)
-.++.+.-+.|+++||.++-+..
T Consensus 7 E~~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 7 EQSLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred ecCcHHHHHHHHHCCCEEEecCc
Confidence 36788888999999999988764
No 53
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=26.64 E-value=1.1e+02 Score=27.59 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=35.0
Q ss_pred cCceEEEeecCCCceeeccc-------CC-CCCEEEEEcCCCCCCCHHHHhcCCcEEEE
Q 018308 232 RGYRIATTHVGMDAISVYDM-------DW-SCPTAIVVGNENRGVSDEALSLSDLRCSI 282 (358)
Q Consensus 232 ~G~~Ivat~~~~~~~~l~~~-------~~-~~~~aLV~GnE~~GLs~e~l~~cD~~v~I 282 (358)
.|-.+++++..+...+-.++ .. ...++|++|. ..|+++++.+.+|...+.
T Consensus 66 ~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G~~i~f~IGG-~~Gl~~~~~~~a~~~~sl 123 (155)
T COG1576 66 KGSYVVLLDIRGKALSSEEFADFLERLRDDGRDISFLIGG-ADGLSEAVKARADQVLSL 123 (155)
T ss_pred CCCeEEEEecCCCcCChHHHHHHHHHHHhcCCeEEEEEeC-cccCCHHHHHHHhhheec
Confidence 46678888877643332222 11 2468999997 689999999999987654
No 54
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=25.63 E-value=1.1e+02 Score=24.40 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=19.7
Q ss_pred CChHHHHHHHHHcCceEEEeecC
Q 018308 220 DAPRECFNVLRSRGYRIATTHVG 242 (358)
Q Consensus 220 ~nl~~~l~~Lk~~G~~Ivat~~~ 242 (358)
.++.+.-+.|+++||.++-+...
T Consensus 8 ~~Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 8 EGLSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred CCchHHHHHHHHCCCEEEecCCc
Confidence 67888899999999999888754
No 55
>COG4678 Muramidase (phage lambda lysozyme) [Carbohydrate transport and metabolism]
Probab=25.22 E-value=2.1e+02 Score=26.18 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=44.9
Q ss_pred CCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHH--HHHHHHHhhhhcccCCCCCCCHHHHHHHHHHHH
Q 018308 255 CPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGI--LMHHAVCDRATRLVGCNGDLTSEEKQILLAEFS 332 (358)
Q Consensus 255 ~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaI--lLye~~rqr~~~~~~~~~~Ls~eE~~~l~~~~~ 332 (358)
.|--+++|++ +-.+.-++-..+|+||+.+. =+-|.|||= +|--.+... ++. ...-+++|+-|+.+..+|+
T Consensus 53 ~pY~vLvgg~---~f~D~S~HP~~~v~i~~~~n---g~cSTAAGrYQ~L~~tW~~~-~~~-l~l~dF~P~~QD~va~~~i 124 (180)
T COG4678 53 RPYDVLVGGQ---LFTDLSDHPRKCVTIPTGPN---GLCSTAAGRYQLLNRTWDDY-APQ-LHLKDFSPESQDAVAYRWI 124 (180)
T ss_pred CCceEEEcCc---eechhhhCChhhEEeecCCC---CccccchhhHHHHHhHHHHh-hhh-cCcccCChhhhhHHHHHHH
Confidence 3444455543 55666667777899999765 455677763 222222111 111 3336799999999999999
Q ss_pred Hh
Q 018308 333 LR 334 (358)
Q Consensus 333 ~r 334 (358)
.+
T Consensus 125 ~d 126 (180)
T COG4678 125 RD 126 (180)
T ss_pred Hh
Confidence 87
No 56
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.80 E-value=2.6e+02 Score=19.56 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=36.8
Q ss_pred CCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCChHHHHHHHHHcCceEE
Q 018308 168 LSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIA 237 (358)
Q Consensus 168 i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~Iv 237 (358)
...||.++.++.....+|+.=..+... .. .. .| ...+ .++.++...+.+.|+++||.++
T Consensus 7 ~d~pG~L~~i~~~l~~~~~nI~~i~~~--~~------~~-~~-~~~v-~~~ve~~~~~~~~L~~~G~~v~ 65 (65)
T cd04882 7 PDKPGGLHEILQILSEEGINIEYMYAF--VE------KK-GG-KALL-IFRTEDIEKAIEVLQERGVELV 65 (65)
T ss_pred CCCCcHHHHHHHHHHHCCCChhheEEE--cc------CC-CC-eEEE-EEEeCCHHHHHHHHHHCCceEC
Confidence 356999999999888888864322210 00 00 01 1122 3444668899999999999863
No 57
>PF02598 Methyltrn_RNA_3: Putative RNA methyltransferase; InterPro: IPR003750 This entry describes proteins of unknown function.; PDB: 1K3R_B.
Probab=22.67 E-value=71 Score=31.38 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCCCEEEEecC
Q 018308 174 VSATFRSADALGVQSVHVVSC 194 (358)
Q Consensus 174 lGaIlRTA~afGv~~Vii~~~ 194 (358)
+|-|+|+|..|+|+.|+|.+.
T Consensus 24 ~gqIARaaaiF~VdEIvVydd 44 (291)
T PF02598_consen 24 AGQIARAAAIFRVDEIVVYDD 44 (291)
T ss_dssp HHHHHHHHHHTT--EEEEEE-
T ss_pred HHHHHHHHHeecCcEEEEEcc
Confidence 588999999999999988765
No 58
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=22.45 E-value=5e+02 Score=26.18 Aligned_cols=87 Identities=13% Similarity=0.035 Sum_probs=53.9
Q ss_pred HHhcCCccEEEEEecCCCCCcHH---HHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCChHHHHHHH
Q 018308 153 VVKNRSYSVCLVVEGLSDFGNVS---ATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVL 229 (358)
Q Consensus 153 v~~~r~~~l~vVLd~i~dP~NlG---aIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl~~~l~~L 229 (358)
.+......++|.+.-.-.+.++. ..++-+...|+++||+-++.-. ..+....-.=..|+......+-.+.++.+
T Consensus 57 ~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg~i---~l~~e~~p~l~ih~S~q~~v~N~~~~~f~ 133 (347)
T COG0826 57 LAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADPGLI---MLARERGPDLPIHVSTQANVTNAETAKFW 133 (347)
T ss_pred HHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCHHHH---HHHHHhCCCCcEEEeeeEecCCHHHHHHH
Confidence 34445666788887777888877 6788899999999976543211 01111111133344433333445778889
Q ss_pred HHcCceEEEeecC
Q 018308 230 RSRGYRIATTHVG 242 (358)
Q Consensus 230 k~~G~~Ivat~~~ 242 (358)
++.|...+.+...
T Consensus 134 ~~~G~~rvVl~rE 146 (347)
T COG0826 134 KELGAKRVVLPRE 146 (347)
T ss_pred HHcCCEEEEeCcc
Confidence 9999877777654
No 59
>PRK02922 glycogen synthesis protein GlgS; Provisional
Probab=21.00 E-value=1.5e+02 Score=22.99 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHH
Q 018308 295 VAAGILMHHAVCDRATRLVGCNGDLTSEEKQILLAEF 331 (358)
Q Consensus 295 vAaaIlLye~~rqr~~~~~~~~~~Ls~eE~~~l~~~~ 331 (358)
+|.+|+.-|+..+.+... ...+.++++++....+++
T Consensus 15 lAsS~A~Me~Qgr~Idvd-~V~gnmsee~r~~F~eRl 50 (67)
T PRK02922 15 LARSFARMHAEGRPVDIQ-AVTGNMDEEHRTWFCARY 50 (67)
T ss_pred HHHHHHHHHHcCCCccHH-HHHhcCCHHHHHHHHHHH
Confidence 577788888876666555 677999999998777665
No 60
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=20.38 E-value=97 Score=27.96 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=25.6
Q ss_pred CCCCCEEEEEcCCCCCCCHHHHhcCCcEEEEC
Q 018308 252 DWSCPTAIVVGNENRGVSDEALSLSDLRCSIP 283 (358)
Q Consensus 252 ~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IP 283 (358)
.-.|+.++++|-| .+.+++.++.||..+.|.
T Consensus 126 re~G~~V~v~g~~-~~ts~~L~~acd~FI~L~ 156 (160)
T TIGR00288 126 KENGKETIVIGAE-PGFSTALQNSADIAIILG 156 (160)
T ss_pred HHCCCEEEEEeCC-CCChHHHHHhcCeEEeCC
Confidence 3358999999965 488999999999988775
Done!