Query 018308
Match_columns 358
No_of_seqs 306 out of 1902
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 13:12:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2x_A TRNA (GM18) methyltrans 100.0 1.5E-46 5E-51 342.2 18.7 189 144-334 6-194 (194)
2 1gz0_A Hypothetical tRNA/RRNA 100.0 9.9E-47 3.4E-51 356.5 12.3 235 71-308 14-252 (253)
3 1zjr_A TRNA (guanosine-2'-O-)- 100.0 2.3E-45 7.7E-50 338.7 19.9 203 139-350 4-206 (211)
4 3nk6_A 23S rRNA methyltransfer 100.0 7.7E-46 2.6E-50 354.8 12.4 230 71-311 36-270 (277)
5 1ipa_A RRMH, RNA 2'-O-ribose m 100.0 2.8E-45 9.7E-50 350.3 6.6 232 71-312 30-265 (274)
6 1x7o_A Avirb, rRNA methyltrans 100.0 7.5E-44 2.6E-48 342.5 11.8 229 71-309 42-279 (287)
7 2i6d_A RNA methyltransferase, 100.0 5E-44 1.7E-48 338.7 8.9 219 71-308 29-257 (257)
8 3e5y_A TRMH family RNA methylt 100.0 3E-41 1E-45 298.6 12.3 150 159-310 4-156 (160)
9 2ha8_A TAR (HIV-1) RNA loop bi 100.0 8.8E-41 3E-45 301.8 13.4 156 155-312 21-179 (184)
10 3n4j_A RNA methyltransferase; 100.0 1.6E-40 5.5E-45 295.4 13.2 151 160-312 4-160 (165)
11 3l8u_A SMU.1707C, putative rRN 100.0 1.4E-39 4.7E-44 294.0 14.7 158 150-312 7-169 (182)
12 3kty_A Probable methyltransfer 100.0 4.5E-38 1.5E-42 281.1 10.8 146 159-308 9-172 (173)
13 3ilk_A Uncharacterized tRNA/RR 100.0 3.8E-35 1.3E-39 276.1 14.1 167 160-332 7-191 (244)
14 3onp_A TRNA/RRNA methyltransfe 100.0 3.2E-35 1.1E-39 277.3 10.5 166 160-331 4-190 (249)
15 3ic6_A Putative methylase fami 100.0 2.1E-34 7.3E-39 267.5 10.3 168 160-331 17-220 (223)
16 3dcm_X AdoMet, uncharacterized 99.7 7.6E-18 2.6E-22 152.9 11.3 144 160-305 4-184 (192)
17 2o3a_A UPF0106 protein AF_0751 95.9 0.02 6.8E-07 50.4 7.6 114 177-305 24-143 (178)
18 2yy8_A ATRM56, UPF0106 protein 95.9 0.02 6.9E-07 51.3 7.7 117 177-306 21-147 (201)
19 2qmm_A UPF0217 protein AF_1056 93.5 0.48 1.6E-05 42.7 10.2 80 220-307 112-195 (197)
20 3aia_A UPF0217 protein MJ1640; 91.1 1.7 5.9E-05 39.5 10.8 81 219-307 122-206 (211)
21 2qwv_A UPF0217 protein VC_A105 86.2 1.6 5.5E-05 39.6 7.0 80 219-306 120-203 (208)
22 3kw2_A Probable R-RNA methyltr 79.5 12 0.00042 34.5 10.4 150 160-312 78-251 (257)
23 1vhk_A Hypothetical protein YQ 79.1 11 0.00037 35.1 9.9 142 162-304 83-251 (268)
24 4e8b_A Ribosomal RNA small sub 60.6 25 0.00085 32.2 7.8 131 162-298 80-229 (251)
25 1ns5_A Hypothetical protein YB 53.5 6.2 0.00021 34.0 2.2 72 226-306 61-142 (155)
26 4fak_A Ribosomal RNA large sub 52.9 7.8 0.00027 33.7 2.8 67 233-306 74-151 (163)
27 1to0_A Hypothetical UPF0247 pr 47.2 9.5 0.00033 33.3 2.4 67 233-306 70-147 (167)
28 1o6d_A Hypothetical UPF0247 pr 46.7 9.4 0.00032 33.2 2.3 67 233-306 65-141 (163)
29 1v6z_A Hypothetical protein TT 46.5 37 0.0013 30.5 6.4 133 162-303 73-221 (228)
30 1vhy_A Hypothetical protein HI 42.0 56 0.0019 29.9 7.0 118 163-284 83-220 (257)
31 3j1r_A Archaeal adhesion filam 39.9 19 0.00066 21.8 2.2 13 293-305 13-25 (26)
32 2egv_A UPF0088 protein AQ_165; 33.2 32 0.0011 31.1 3.7 134 163-303 74-225 (229)
33 3ib6_A Uncharacterized protein 31.5 65 0.0022 26.8 5.2 49 217-265 34-88 (189)
34 1k3r_A Conserved protein MT000 25.9 45 0.0015 31.2 3.4 21 174-194 28-48 (268)
35 1z85_A Hypothetical protein TM 22.7 54 0.0018 29.7 3.2 131 162-302 87-225 (234)
36 2i2w_A Phosphoheptose isomeras 21.4 81 0.0028 27.2 4.1 22 221-242 146-167 (212)
37 3sgz_A Hydroxyacid oxidase 2; 20.7 1.7E+02 0.0058 28.2 6.4 75 166-242 80-157 (352)
No 1
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=100.00 E-value=1.5e-46 Score=342.23 Aligned_cols=189 Identities=33% Similarity=0.486 Sum_probs=169.9
Q ss_pred hhhHHHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCChH
Q 018308 144 EERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPR 223 (358)
Q Consensus 144 ~~r~~~i~~v~~~r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl~ 223 (358)
+.|...++++++.+..+++||||+|+||+|+|+|+|||++||+++|+++.+... ++++.|+|+|+.+|+|+..+.|+.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~vvLd~~~dp~NlGaI~Rta~a~G~~~v~l~~~~~~--~~~~~r~s~Ga~~~l~~~~~~~l~ 83 (194)
T 1v2x_A 6 EARRRRIEEVLRRRQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGG--VPTFNETSGGSHKWVYLRVHPDLH 83 (194)
T ss_dssp CCHHHHHHHHHTTCBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGG--SCCCCSSCSSGGGTSEEEEESSHH
T ss_pred hhhHhhHHHHHhcCCCCEEEEEeCCCCcChHHHHHHHHHHhCCCEEEEeCCCCC--chhhHHHCCCChheeeeEecCCHH
Confidence 445678888888777789999999999999999999999999999999876432 256789999999999999999999
Q ss_pred HHHHHHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHH
Q 018308 224 ECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHH 303 (358)
Q Consensus 224 ~~l~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye 303 (358)
++++.++++||++++++...++.+++++++++|++||||||+.||++++++.||.+|+|||.|.++|||||+|+||+|||
T Consensus 84 ~~l~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~d~~v~IPm~g~~~SLNvs~AaaI~lye 163 (194)
T 1v2x_A 84 EAFRFLKERGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFE 163 (194)
T ss_dssp HHHHHHHHTTCEEEEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEecCCCCccHhHcccCCCeEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCceeHHHHHHHHHHH
Confidence 99999999999999999765578899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccCCCCCCCHHHHHHHHHHHHHh
Q 018308 304 AVCDRATRLVGCNGDLTSEEKQILLAEFSLR 334 (358)
Q Consensus 304 ~~rqr~~~~~~~~~~Ls~eE~~~l~~~~~~r 334 (358)
++||+..++.+..++++++|++.++.+|++|
T Consensus 164 ~~rq~~~~~~~~~~~~~~~e~~~l~~~~~~~ 194 (194)
T 1v2x_A 164 AQRQRLKAGLYDRPRLDPELYQKVLADWLRK 194 (194)
T ss_dssp HHHHHHHHTGGGSCCSCHHHHHHHHHHC---
T ss_pred HHHHhcccCCcCCCCCCHHHHHHHHHHHhhC
Confidence 9999876664556899999999999999864
No 2
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=9.9e-47 Score=356.49 Aligned_cols=235 Identities=22% Similarity=0.250 Sum_probs=188.1
Q ss_pred CCCcHHHHHHhH-cCCcchhhhhhcccccccCCCcchhhhhhc-cCCCCccccccCCC--eeeCcHHHHHhcCCCcchhh
Q 018308 71 DTPSKDNVEKLL-TNPDDVTQFMKMERSCMVNDGVGSMESLSN-KRWFPYLDRYKCGD--VYLSSSEVVEALSPYLMEER 146 (358)
Q Consensus 71 ~~~g~~av~all-~~p~~I~rL~~~~~~~~~~~~~~~~~~LA~-~~~~~~~~~~~~~~--~~~~~q~v~~~l~~~~~~~r 146 (358)
-.||.|+|++++ .+++.|.++|++++..+.++. +++..... +..+..+++..++. ....|||+++.+.+.....
T Consensus 14 ~veG~~~V~eal~~~~~~i~~l~~~~~~~~~~~~-~l~~~~~~~~i~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~- 91 (253)
T 1gz0_A 14 MIYGIHAVQALLERAPERFQEVFILKGREDKRLL-PLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQ- 91 (253)
T ss_dssp EEESHHHHHHHHHSCGGGEEEEEEESSCCCTTTH-HHHHHHHHHTCEEEEECSHHHHHTTTSCCCTTEEEEECCCCCCC-
T ss_pred EEEEHHHHHHHHhcCCCCeEEEEEECCccchhHH-HHHHHHHHCCCcEEEeCHHHHHHHhCCCCCcEEEEEEeccccCc-
Confidence 469999999999 556789999999875542222 22222111 12233345544443 2457899998887544210
Q ss_pred HHHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCChHHHH
Q 018308 147 KERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECF 226 (358)
Q Consensus 147 ~~~i~~v~~~r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl~~~l 226 (358)
...+.++++.+..+++||||+|+||+|+|+|+|||++||+++|++..+++++.++++.|+|+|+.+|+|+..+.|+.+++
T Consensus 92 ~~~l~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l 171 (253)
T 1gz0_A 92 ENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTM 171 (253)
T ss_dssp GGGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEEESCHHHHH
T ss_pred HHHHHHHHhccCCCEEEEEeCCCCcCcHHHHHHHHHHhCCCEEEEeCCCCCCCCHHHHhhhcchheEEEEEEeCCHHHHH
Confidence 01244455444457899999999999999999999999999998876554444558999999999999999999999999
Q ss_pred HHHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018308 227 NVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (358)
Q Consensus 227 ~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~r 306 (358)
+.+++.||++++++..+ +.+++++++++|++||||||+.|||+++++.||..|+|||.|.++|||||+|+||+|||+.|
T Consensus 172 ~~l~~~g~~i~~~~~~~-~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~r 250 (253)
T 1gz0_A 172 RMLQEENIWIVGTAGEA-DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 250 (253)
T ss_dssp HHHHHTTCEEEEECTTC-SEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCSSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEECCC-CcchhhccCCCCEEEEECCCCcCcCHHHHHhCCEEEEECCCCCCCceeHHHHHHHHHHHHHH
Confidence 99999999999999754 57899999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 018308 307 DR 308 (358)
Q Consensus 307 qr 308 (358)
||
T Consensus 251 q~ 252 (253)
T 1gz0_A 251 QR 252 (253)
T ss_dssp HT
T ss_pred hh
Confidence 86
No 3
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=100.00 E-value=2.3e-45 Score=338.68 Aligned_cols=203 Identities=29% Similarity=0.467 Sum_probs=175.6
Q ss_pred CCCcchhhHHHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEE
Q 018308 139 SPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIEL 218 (358)
Q Consensus 139 ~~~~~~~r~~~i~~v~~~r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~ 218 (358)
.++..+.|...++++++++..+++||||+|+||+|+|+|+|||++||+++|+++.+... ..+.+.|+|+|+.+|+|+..
T Consensus 4 ~~~~~~~~~~~~~~~l~~~~~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~v~lv~~~~~-~~~~~~r~s~Ga~~~l~~~~ 82 (211)
T 1zjr_A 4 EYLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGK-KAKINEGITQGSHKWVFIEK 82 (211)
T ss_dssp --CHHHHHHHHHHHHHTTCEEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTT-CCCCCHHHHTTGGGSSEEEE
T ss_pred ccccChhhHhhHHHHHhccCCCeEEEEECCCCcCcHHHHHHHHHHhCCCEEEEeCCCcC-chHHHHHHcCCCcccceeEe
Confidence 34556777888999998777789999999999999999999999999999999876533 22246699999999999999
Q ss_pred eCChHHHHHHHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHH
Q 018308 219 WDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAG 298 (358)
Q Consensus 219 ~~nl~~~l~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaa 298 (358)
+.|+.++++.++++||+|++++...++.+++++++++|++||||||+.||++++++.||.+|+|||.|.++|||||+|+|
T Consensus 83 ~~~l~~~l~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~d~~v~IPm~g~~~SLNvsvAaa 162 (211)
T 1zjr_A 83 VDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATG 162 (211)
T ss_dssp CSCHHHHHHHHHHTTCEEEEEBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCCSSCSSCCHHHHHH
T ss_pred cCCHHHHHHHHHHCCCEEEEEecCCCCcchhhcccCCCEEEEECCcccCCCHHHHHhCCcEEEeCCCCCCCeEEHHHHHH
Confidence 99999999999999999999997656789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHHHHhhcCchHHHHHHHHHhc
Q 018308 299 ILMHHAVCDRATRLVGCNGDLTSEEKQILLAEFSLRHSKSAISIVHEYAKRK 350 (358)
Q Consensus 299 IlLye~~rqr~~~~~~~~~~Ls~eE~~~l~~~~~~r~~~~~~~i~~~~~~~~ 350 (358)
|+|||++||+...++...++++++|++.++.+|.. .+++++++.
T Consensus 163 I~lye~~rq~~~~~~~~~~~~~~~e~~~l~~~~~~--------~~~~~~~~~ 206 (211)
T 1zjr_A 163 IILYEAQRQREEKGMYSRPSLSEEEIQKILKKWAY--------EDVIKERKR 206 (211)
T ss_dssp HHHHHHHHHHHHTTTTSSCSSCHHHHHHHHHHHHH--------HHHCC----
T ss_pred HHHHHHHHHhhccCccCCCCCCHHHHHHHHHHHHH--------HHHHHHHhc
Confidence 99999999987655444578999999999999963 445555554
No 4
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=100.00 E-value=7.7e-46 Score=354.77 Aligned_cols=230 Identities=19% Similarity=0.183 Sum_probs=184.0
Q ss_pred CCCcHHHHHHhHcCCcchhhhhhcccccccCCCcchhhhhh-ccCCCCccccccCCC--eeeCcHHHHHhcCCCcchhhH
Q 018308 71 DTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLS-NKRWFPYLDRYKCGD--VYLSSSEVVEALSPYLMEERK 147 (358)
Q Consensus 71 ~~~g~~av~all~~p~~I~rL~~~~~~~~~~~~~~~~~~LA-~~~~~~~~~~~~~~~--~~~~~q~v~~~l~~~~~~~r~ 147 (358)
-.||.|+|+++|.....|.++|++++..+ . . +++..+. .+..+..+++..++. ....|||+++.+......
T Consensus 36 lveG~~~V~eaL~~~~~i~~l~~~~~~~~-~-~-~l~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~--- 109 (277)
T 3nk6_A 36 LIEDTEPLMECIRAGVQFIEVYGSSGTPL-D-P-ALLDLCRQREIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPA--- 109 (277)
T ss_dssp EEESHHHHHHHHHTTCCEEEEEEETTSCC-C-H-HHHHHHHHTTCCEEEECHHHHTTCC-----CCEEEEEECCCCC---
T ss_pred EEEeHHHHHHHHhCCCCeEEEEEeCCccC-c-H-HHHHHHHhcCCcEEEECHHHHHHhhCCCCCCeEEEEEecCCCC---
Confidence 56999999999966668999999987654 2 2 2333221 122333455555554 345788998887654221
Q ss_pred HHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCcccc-chhhhhcCCCceeEeEEEeCChHHHH
Q 018308 148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRY-RENRHVSMGAEKWLDIELWDAPRECF 226 (358)
Q Consensus 148 ~~i~~v~~~r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~-~~~~r~S~Ga~~~v~v~~~~nl~~~l 226 (358)
.+++++.. ..+ +||||+|+||||+|+|+|||++||+++|++...++.+++ +++.|+|+|+.+|+|+.++ |+.+++
T Consensus 110 -~l~~~~~~-~~~-~lvLd~v~dP~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~v~ras~Ga~~~l~i~~~-~l~~~l 185 (277)
T 3nk6_A 110 -RLADIAER-GGD-VVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLA-DREEAV 185 (277)
T ss_dssp -CHHHHHHH-CSC-EEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCCCSCTTCHHHHHHTTTCTTTSCEEEC-CHHHHH
T ss_pred -CHHHHhcc-CCC-EEEEEcCCCcchHHHHHHHHHHcCCCEEEEcCCCCcCCCCHHHHHHhCChhhcCeEEEE-CHHHHH
Confidence 23444433 234 899999999999999999999999999988873455554 5799999999999999999 999999
Q ss_pred HHHHHcCceEEEeecCCCceeecc-cCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHH
Q 018308 227 NVLRSRGYRIATTHVGMDAISVYD-MDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAV 305 (358)
Q Consensus 227 ~~Lk~~G~~Ivat~~~~~~~~l~~-~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~ 305 (358)
+.|+++||++++++.++ +.++++ +++++|++||||||+.|||+++++.||..|+|||.|.++|||||||+||+|||+.
T Consensus 186 ~~lk~~g~~v~~~~~~~-~~~~~~~~~~~~~~alv~GnE~~Gls~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~ 264 (277)
T 3nk6_A 186 SFLRDNDIALMVLDTDG-DLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHERS 264 (277)
T ss_dssp HHHHHTTCCEEEECTTC-SEEGGGGGGCCSCCEEEEEBTTTBSCHHHHHHCSCEEECCCSSTTCCCCHHHHHHHHHHHTH
T ss_pred HHHHhcCCeEEEEecCC-CcchhhhhccCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCCchHHHHHHHHHHHHH
Confidence 99999999999999875 578999 9999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhc
Q 018308 306 CDRATR 311 (358)
Q Consensus 306 rqr~~~ 311 (358)
|||..+
T Consensus 265 rq~~~~ 270 (277)
T 3nk6_A 265 ARNFAV 270 (277)
T ss_dssp HHHHHH
T ss_pred Hhhhhh
Confidence 998643
No 5
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=2.8e-45 Score=350.33 Aligned_cols=232 Identities=21% Similarity=0.208 Sum_probs=177.7
Q ss_pred CCCcHHHHHHhHcCCcchhhhhhcccccccCCCcchhhhhhc-c-CCCCccccccCCC--eeeCcHHHHHhcCCCcchhh
Q 018308 71 DTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSN-K-RWFPYLDRYKCGD--VYLSSSEVVEALSPYLMEER 146 (358)
Q Consensus 71 ~~~g~~av~all~~p~~I~rL~~~~~~~~~~~~~~~~~~LA~-~-~~~~~~~~~~~~~--~~~~~q~v~~~l~~~~~~~r 146 (358)
-.||.|+|++++.....|.++|++++..+..+. +.++.+.. + ..+..+++..++. ....|||+++.+.....
T Consensus 30 ~veG~~~v~eal~~~~~i~~l~~~~~~~~~~~~-~l~~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~--- 105 (274)
T 1ipa_A 30 LIEGAREIERALQAGIELEQALVWEGGLNPEEQ-QVYAALGRVGRLALLEVSEAVLKKLSVRDNPAGLIALARMPER--- 105 (274)
T ss_dssp EEESHHHHHHHHHTTCCEEEEEEETTCCCHHHH-HHHHCC-----CEEEEECHHHHHHHCCSSSCCSEEEEEECCCC---
T ss_pred EEEeHHHHHHHHhCCCCeEEEEEEcCcccchHH-HHHHHHHhcCCccEEEeCHHHHHHHhCCCCCCeEEEEEeCCCC---
Confidence 469999999999544579999998775431111 12211111 1 1122233333332 23356666666543221
Q ss_pred HHHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCChHHHH
Q 018308 147 KERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECF 226 (358)
Q Consensus 147 ~~~i~~v~~~r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl~~~l 226 (358)
.+++++ ....+++||||+|+||+|+|+|+|||++||+++|++..+ ++..++++.|+|+|+.+|+|+.+ .|+.+++
T Consensus 106 --~l~~~~-~~~~~~~lvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~-~~~~~~~v~ras~Ga~~~l~~~~-~~l~~~l 180 (274)
T 1ipa_A 106 --TLEEYR-PSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG-VDLYSPQVIRNSTGVVFSLRTLA-ASESEVL 180 (274)
T ss_dssp --CCCCCC-CCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESC-CCTTCHHHHHHTTTGGGTSCEEE-ECHHHHH
T ss_pred --CHHHHh-ccCCCeEEEEeCCCCcchHHHHHHHHHhhccCEEEEeCC-cCcCCHHHHHHcCChhhcceeEe-CCHHHHH
Confidence 111111 123458999999999999999999999999999998877 55445589999999999999998 9999999
Q ss_pred HHHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018308 227 NVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (358)
Q Consensus 227 ~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~r 306 (358)
+.|+++||++++++..+ +.+++++++++|++||||||+.||++++++.||..|+|||.|.++|||||+|+||+|||++|
T Consensus 181 ~~l~~~g~~i~~~~~~~-~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~r 259 (274)
T 1ipa_A 181 DWIKQHNLPLVATTPHA-EALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEALR 259 (274)
T ss_dssp HHHHHTTCCEEEECTTC-SSBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEEBCCCCSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCC-CcchhhcCCCCCEEEEECCCCcCCCHHHHHhCCeEEEECCCCCCCceeHHHHHHHHHHHHHH
Confidence 99999999999999875 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcc
Q 018308 307 DRATRL 312 (358)
Q Consensus 307 qr~~~~ 312 (358)
||..++
T Consensus 260 q~~~~~ 265 (274)
T 1ipa_A 260 QRLLRD 265 (274)
T ss_dssp HHTC--
T ss_pred hcccCC
Confidence 886554
No 6
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=100.00 E-value=7.5e-44 Score=342.52 Aligned_cols=229 Identities=21% Similarity=0.194 Sum_probs=183.1
Q ss_pred CCCcHHHHHHhHcCCcchhhhhhccccccc-CCCcchhhhhhccCCCCccccccCCC--eee-CcHHHHHhcCCCcchhh
Q 018308 71 DTPSKDNVEKLLTNPDDVTQFMKMERSCMV-NDGVGSMESLSNKRWFPYLDRYKCGD--VYL-SSSEVVEALSPYLMEER 146 (358)
Q Consensus 71 ~~~g~~av~all~~p~~I~rL~~~~~~~~~-~~~~~~~~~LA~~~~~~~~~~~~~~~--~~~-~~q~v~~~l~~~~~~~r 146 (358)
-.||.|.|++++.....|.++|++++.... .+. ++++ .+. ..+..+++..++. ... .|||+++.+.....
T Consensus 42 ~veG~~~V~eal~~~~~i~~l~~~~~~~~~~~~~-~l~~-~~~-~~v~~v~~~~l~~ls~~~~~~qGv~a~~~~~~~--- 115 (287)
T 1x7o_A 42 LVMGVRPISLAVEHGWPVRTLLYDGQRELSKWAR-ELLR-TVR-TEQIAMAPDLLMELGEKNEAPPEVVAVVEMPAD--- 115 (287)
T ss_dssp EEESHHHHHHHHHTTCCEEEEEEESSCCCCHHHH-HHHH-HSC-SEEEEECHHHHTTSSCSSSCCCSEEEEEECCCC---
T ss_pred EEEeHHHHHHHHhCCCCeEEEEEecCcccchhHH-HHHH-HcC-CcEEEeCHHHHHHHhCCCCCCCcEEEEEecCCC---
Confidence 469999999999555779999998775431 111 1111 111 1222344444444 234 67888887764321
Q ss_pred HHHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCChHHHH
Q 018308 147 KERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECF 226 (358)
Q Consensus 147 ~~~i~~v~~~r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl~~~l 226 (358)
.+++++. ...+++||||+|+||||+|+|+|||++||+++|++..++++..++++.|+|+|+.+|+|+..+.|+.+++
T Consensus 116 --~l~~~~~-~~~~l~lvLd~i~dP~NlGaIiRta~a~G~~~vil~~~~~d~~~~kv~ras~Ga~~~l~i~~~~~l~~~l 192 (287)
T 1x7o_A 116 --DLDRIPV-REDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVM 192 (287)
T ss_dssp --CGGGSCC-CTTCEEEEEESCSCHHHHHHHHHHHHHTTCCEEEEESSSSCTTSHHHHHHTTTGGGTSCEEEESSHHHHH
T ss_pred --CHHHHhc-ccCCEEEEEeCCCCcchHHHHHHHhHhcccCEEEEECCCcCccCHHHHhhhcCcceeeeEEEeCCHHHHH
Confidence 1222221 2246899999999999999999999999999999887655544558999999999999999999999999
Q ss_pred HHH---HHcCce--EEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHH
Q 018308 227 NVL---RSRGYR--IATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301 (358)
Q Consensus 227 ~~L---k~~G~~--Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlL 301 (358)
+.| ++.||+ +++++..+ +.+++++++++|++||||||+.||++++++.||..|+|||.|.++|||||+|+||+|
T Consensus 193 ~~l~~~~~~g~~~~i~~~~~~~-~~~~~~~~~~~~~alV~GnE~~Gls~~~~~~~d~~v~IPm~g~~~SLNvavAaaI~l 271 (287)
T 1x7o_A 193 DWVEARRAAGTPIVLVGTDEHG-DCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIPMAGSASSLNAANAATAIL 271 (287)
T ss_dssp HHHHHHHHHTCCCEEEEECTTC-SEEGGGSCTTSCEEEEECBTTTBSCHHHHHHCSEEEECCCSSSSCCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEEEECCC-CccHhhcCCCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCceEHHHHHHHHH
Confidence 999 999999 99999874 678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 018308 302 HHAVCDRA 309 (358)
Q Consensus 302 ye~~rqr~ 309 (358)
||+.|||.
T Consensus 272 ye~~rq~~ 279 (287)
T 1x7o_A 272 YEAVRQRI 279 (287)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcc
Confidence 99999875
No 7
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=100.00 E-value=5e-44 Score=338.72 Aligned_cols=219 Identities=18% Similarity=0.199 Sum_probs=175.4
Q ss_pred CCCcHHHHHHhHcCCcchhhhhhcccccccCCCcchhhhhhccCCCCcccc-ccCCC--eeeCcHHHHHhcCCCcchhhH
Q 018308 71 DTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYLDR-YKCGD--VYLSSSEVVEALSPYLMEERK 147 (358)
Q Consensus 71 ~~~g~~av~all~~p~~I~rL~~~~~~~~~~~~~~~~~~LA~~~~~~~~~~-~~~~~--~~~~~q~v~~~l~~~~~~~r~ 147 (358)
-.||.|+|++++.. ..|.++|++++..+ .+. + ..+..+..+++ ..++. ....|||+++.+......
T Consensus 29 ~veG~~~v~eal~~-~~i~~l~~~~~~~~-~l~----~--~~~~~v~~v~~~~~l~~ls~~~~~qGv~a~~~~~~~~--- 97 (257)
T 2i6d_A 29 AVEGPKLVGEMLPF-YRCRMLVGTAAMLR-AVS----T--PHDAEVVELPESFDFKRISTQTTPQPLMAVFDLPAEP--- 97 (257)
T ss_dssp EEESHHHHHHHGGG-SCEEEEEEEHHHHH-TSC----C--CTTCEEEEECTTCCGGGTCCSSSCCSEEEEEECCCCC---
T ss_pred EEEcHHHHHHHHhc-CCcCEEEEEcCchH-HHH----H--hcCCCEEEeChHHHHHHHhcCCCCCeEEEEEECCCCC---
Confidence 46999999999966 77999999876543 121 0 01112233555 55554 345789999887643211
Q ss_pred HHHHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCChHHHHH
Q 018308 148 ERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFN 227 (358)
Q Consensus 148 ~~i~~v~~~r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl~~~l~ 227 (358)
+.++ .+++||||+|+||+|+|+|+|||++||+++|++..++++..++++.|+|+|+.+|+|+....|+.++++
T Consensus 98 --l~~~-----~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~v~ras~Ga~~~l~~~~~~~l~~~l~ 170 (257)
T 2i6d_A 98 --EPVV-----EGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLA 170 (257)
T ss_dssp --CCCC-----CSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTSHHHHHTSTTGGGTCEEEECSCHHHHHH
T ss_pred --hHHh-----CCeEEEEECCCCcchHHHHHHHHHHhCCCEEEEcCCCCCcCCHHHheecCCcceeeeEEEeCCHHHHHH
Confidence 1111 258999999999999999999999999999987766554445589999999999999985599999999
Q ss_pred HHHHcCceEEEeecCCCceeeccc--CCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCC-----CCCCcccHHHHHHHH
Q 018308 228 VLRSRGYRIATTHVGMDAISVYDM--DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMK-----GMVDSFNVSVAAGIL 300 (358)
Q Consensus 228 ~Lk~~G~~Ivat~~~~~~~~l~~~--~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~-----G~veSLNVSvAaaIl 300 (358)
.|+++||++++++..+ ..+++++ ++++|++||||||+.|||+++++.||..|+|||. |.++|||||+|+||+
T Consensus 171 ~l~~~g~~i~~~~~~~-~~~~~~~~~~~~~~~alv~GnE~~Gls~~~~~~~d~~v~IPm~~~~~~g~~~SLNvsvAaaI~ 249 (257)
T 2i6d_A 171 YFRRQGIPVYGAFLDG-QSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAIL 249 (257)
T ss_dssp HHHHTTCCEEEEEEEE-EETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSEEEECCCCSSCC----CCCCHHHHHHHH
T ss_pred HHHHCCCEEEEEECCC-CccHHHhhhCcCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCcCCCCCCCCChhHHHHHHHH
Confidence 9999999999999864 4678899 9999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhh
Q 018308 301 MHHAVCDR 308 (358)
Q Consensus 301 Lye~~rqr 308 (358)
|||+.||+
T Consensus 250 lye~~rq~ 257 (257)
T 2i6d_A 250 CSEWRRRS 257 (257)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 99999874
No 8
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=100.00 E-value=3e-41 Score=298.59 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=137.9
Q ss_pred ccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccc-hhhhhcCCCceeEeEEEeCChHHHHHHHHHcCceEE
Q 018308 159 YSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR-ENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIA 237 (358)
Q Consensus 159 ~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~-~~~r~S~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~Iv 237 (358)
+.++||||+++||+|+|+|+|||++||++.+ ++.+.+.+.++ ++.|+++|+++|+|+.++.|+.++++.++++||+++
T Consensus 4 ~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~v-iv~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~l~~~g~~i~ 82 (160)
T 3e5y_A 4 SMFNVVLVEPEIPPNTGNVIRLCANTGARLH-LIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMF 82 (160)
T ss_dssp -CCEEEEESCCCHHHHHHHHHHHHHHTCEEE-EESSCSSCCCHHHHHHTTCCHHHHHTCEEESSHHHHHHHHCCCGGGEE
T ss_pred CcEEEEEeCCCCCCcHHHHHHHHHHcCCcEE-EECCCCCCCccHHHHHHcCCchhhcceEEeCCHHHHHHHHHhCCCEEE
Confidence 4589999999999999999999999999766 56666666665 678999999999999999999999999999999999
Q ss_pred EeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhc--CCcEEEECCCCCCCcccHHHHHHHHHHHHHHhhhh
Q 018308 238 TTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSL--SDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRAT 310 (358)
Q Consensus 238 at~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~--cD~~v~IPm~G~veSLNVSvAaaIlLye~~rqr~~ 310 (358)
+++..+ +.+++++++++|++||||||+.||++++++. ||..|+|||.|.++|||||||++|+|||++|||..
T Consensus 83 ~~~~~~-~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~rq~~~ 156 (160)
T 3e5y_A 83 AFTTRG-SGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGF 156 (160)
T ss_dssp EECSTT-CEEGGGSCCCTTCEEEEEBTTTBSCHHHHTTSCGGGEEECCCCSSSCCCCHHHHHHHHHHHHHHHTTT
T ss_pred EEecCC-CccccccCCCCCEEEEECCCcCCCCHHHHhhccCCeEEEEcCCCCCCeehHHHHHHHHHHHHHHhccC
Confidence 999864 6789999999999999999999999999999 99999999999999999999999999999999753
No 9
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=100.00 E-value=8.8e-41 Score=301.81 Aligned_cols=156 Identities=18% Similarity=0.297 Sum_probs=139.2
Q ss_pred hcCCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccch-hhhhcCCCceeEeEEEe--CChHHHHHHHHH
Q 018308 155 KNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRE-NRHVSMGAEKWLDIELW--DAPRECFNVLRS 231 (358)
Q Consensus 155 ~~r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~-~~r~S~Ga~~~v~v~~~--~nl~~~l~~Lk~ 231 (358)
++++.+++||||+|+||+|+|+|+|||++||+++|++...+ ....+ ..|+|+|+.+|+|+..+ .|+.++++.+++
T Consensus 21 ~~~~~~~~vvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~~--~~~~k~~~r~s~ga~~~l~~~~~~~~~~~~~l~~lk~ 98 (184)
T 2ha8_A 21 GKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQ--CISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKT 98 (184)
T ss_dssp CCCCCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESCGG--GGGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHHHH
T ss_pred cCCCCCEEEEEcCCCCCCcHHHHHHHHHHhCCCEEEECCCC--CCCcccceeecCCccceEEEEEEcCCCHHHHHHHHHH
Confidence 34667789999999999999999999999999999765422 22234 45889999999999976 799999999999
Q ss_pred cCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHHhhhhc
Q 018308 232 RGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATR 311 (358)
Q Consensus 232 ~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~rqr~~~ 311 (358)
+||++++++...++.+++++++++|++||||||+.||++++++.||.+|+|||.|.++|||||+|+||+|||++||+..+
T Consensus 99 ~g~~i~~~~~~~~~~~~~~~~~~~~~alV~G~E~~Gls~~~l~~~d~~v~IPm~g~~~SLNvavAaaI~lye~~rq~~~~ 178 (184)
T 2ha8_A 99 EGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLS 178 (184)
T ss_dssp TTCEEEEECCCTTCEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCCSSSSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECCCCCcchhhccCCCCEEEEECCcccCCCHHHHHhCCcEEEECCCCCCCcchHHHHHHHHHHHHHHHhhcc
Confidence 99999999987667889999999999999999999999999999999999999999999999999999999999998765
Q ss_pred c
Q 018308 312 L 312 (358)
Q Consensus 312 ~ 312 (358)
+
T Consensus 179 ~ 179 (184)
T 2ha8_A 179 H 179 (184)
T ss_dssp -
T ss_pred c
Confidence 5
No 10
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=100.00 E-value=1.6e-40 Score=295.40 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=138.5
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccc-hhhhhcCCCceeEeEEEeCChHHHHHHHHH---cCce
Q 018308 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR-ENRHVSMGAEKWLDIELWDAPRECFNVLRS---RGYR 235 (358)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~-~~~r~S~Ga~~~v~v~~~~nl~~~l~~Lk~---~G~~ 235 (358)
.++||||+++||+|+|+|+|||++||++.+ ++.+.+.+.++ ++.|+++|+++|+|+..+.|+.++++.+|+ .||+
T Consensus 4 ~~~vvL~~~~dp~NlGaI~Rta~a~G~~~v-iv~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~lk~~~~~g~~ 82 (165)
T 3n4j_A 4 MLNIVLFEPEIPPNTGNIIRLCANTGCQLH-LIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPAR 82 (165)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCEEE-EESCCSSCCCHHHHHHTTCCHHHHTTCEEESSHHHHHHHTTCCSSSCTT
T ss_pred cEEEEEeCCCCCCcHHHHHHHHHHcCCeEE-EECCCCCCCccHHHHHhccCceeecCeEEeCCHHHHHHHHHhhccCCCE
Confidence 589999999999999999999999999766 56666666665 678999999999999999999999999998 9999
Q ss_pred EEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhc--CCcEEEECCCCCCCcccHHHHHHHHHHHHHHhhhhcc
Q 018308 236 IATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSL--SDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDRATRL 312 (358)
Q Consensus 236 Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~--cD~~v~IPm~G~veSLNVSvAaaIlLye~~rqr~~~~ 312 (358)
+++++..+ +.+++++++++|++||||||+.||++++++. ||.+|+|||.|.++|||||+|+||+|||++|||...+
T Consensus 83 i~~~~~~~-~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~~~SLNvavAaaI~lye~~rq~~~~~ 160 (165)
T 3n4j_A 83 LFALTTKG-TPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPG 160 (165)
T ss_dssp EEEECTTC-SSBTTTSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHHHHHTCTT
T ss_pred EEEEEcCC-CcchhhccCCCCeEEEECCCCCCCCHHHHhhccCCeEEEECCCCCCceeeHHHHHHHHHHHHHHhccccc
Confidence 99999764 5789999999999999999999999999999 8999999999999999999999999999999986443
No 11
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=100.00 E-value=1.4e-39 Score=294.00 Aligned_cols=158 Identities=13% Similarity=0.075 Sum_probs=130.7
Q ss_pred HHHHHhcCCccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccc-hhhhhcCCCceeEeEEEeCChHHHHHH
Q 018308 150 FVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR-ENRHVSMGAEKWLDIELWDAPRECFNV 228 (358)
Q Consensus 150 i~~v~~~r~~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~-~~~r~S~Ga~~~v~v~~~~nl~~~l~~ 228 (358)
++...++++.+++||||+|+||+|+|+|+|||++||++.++ +.+.+.+.++ ++.|+++|+++++|+..++|+.++++.
T Consensus 7 ~~~~~~~~~~~l~vvLd~v~dP~NlGaI~Rta~afG~~~vi-v~~~~~~~~~~~~~ras~g~~~~v~i~~~~~l~~~l~~ 85 (182)
T 3l8u_A 7 EKENKLLTLGRNHVVLFQPQIPANTGNIARTCAATNTSLHI-IRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSLNDFMNI 85 (182)
T ss_dssp --------CCCEEEEEESCCCHHHHHHHHHHHHHHTCEEEE-ESCCSSCCCTTTC------CCC-CCEEEESSHHHHHHH
T ss_pred HHHHhhcCCCCEEEEEeCCCCcCcHHHHHHHHHHcCCcEEE-ECCCCCCCCcHHHHHhCcChhhhCCeEEcCCHHHHHHH
Confidence 44555667888999999999999999999999999997765 5666666664 678999999999999999999999998
Q ss_pred HHHcCceEEEeecCCCceeecccCCCC--CEEEEEcCCCCCCCHHHHh-cCCcEEEECCCC-CCCcccHHHHHHHHHHHH
Q 018308 229 LRSRGYRIATTHVGMDAISVYDMDWSC--PTAIVVGNENRGVSDEALS-LSDLRCSIPMKG-MVDSFNVSVAAGILMHHA 304 (358)
Q Consensus 229 Lk~~G~~Ivat~~~~~~~~l~~~~~~~--~~aLV~GnE~~GLs~e~l~-~cD~~v~IPm~G-~veSLNVSvAaaIlLye~ 304 (358)
+ ||++++++..+ +.+++++++++ |++||||||+.|||+++++ .||.+|+|||.| .++|||||||+||+|||+
T Consensus 86 l---g~~i~~~~~~~-~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~~d~~v~IPm~g~~~~SLNVsvAaaI~lyE~ 161 (182)
T 3l8u_A 86 C---SGKLHLITKFA-NKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRIPVNDQHVRSLNLSNTVCMIVYEA 161 (182)
T ss_dssp C---CSEEEEECSSC-SSBGGGSCCCSSSCEEEEECBTTTBSCHHHHHHTGGGEEBCCCCTTTCSCCCHHHHHHHHHHHH
T ss_pred C---CCEEEEEEcCC-CccccccccCCCCCEEEEECCccCCCCHHHHHHhCCeEEEECCCCCCCCCEeHHHHHHHHHHHH
Confidence 8 99999998764 67899999998 9999999999999999996 999999999999 999999999999999999
Q ss_pred HHhhhhcc
Q 018308 305 VCDRATRL 312 (358)
Q Consensus 305 ~rqr~~~~ 312 (358)
.|||...+
T Consensus 162 ~rq~~~~~ 169 (182)
T 3l8u_A 162 LRQQDFIG 169 (182)
T ss_dssp HHHTTTGG
T ss_pred HHhccccC
Confidence 99987665
No 12
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=100.00 E-value=4.5e-38 Score=281.07 Aligned_cols=146 Identities=21% Similarity=0.211 Sum_probs=128.2
Q ss_pred ccEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccc--cchhhhhcCCCceeEeE-EEeCChHHHHHHHHHcCce
Q 018308 159 YSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKR--YRENRHVSMGAEKWLDI-ELWDAPRECFNVLRSRGYR 235 (358)
Q Consensus 159 ~~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~--~~~~~r~S~Ga~~~v~v-~~~~nl~~~l~~Lk~~G~~ 235 (358)
.+++||||+++||+|+|+|+|||++||+++|+++.+.+.+. .+++.|+|+|+.+++|+ ..++|+.++++.++ +
T Consensus 9 ~~~~vvL~~~~dp~N~Gai~Rta~a~G~~~l~lv~~~~~d~~~~~~~~r~a~Ga~~~l~~~~~~~~l~~~l~~~~----~ 84 (173)
T 3kty_A 9 SRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVT----L 84 (173)
T ss_dssp TTEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTGGGSHHHHHHHTTCHHHHHTCEEESCHHHHHTTCS----E
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHcCCCEEEEeCCCccccCCCHHHHHHcCCHHHhhchheecCCHHHHHHhCC----e
Confidence 45899999999999999999999999999999998877653 45788999999999995 45689999988775 6
Q ss_pred EEEeecCCC------------ceeec---ccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHH
Q 018308 236 IATTHVGMD------------AISVY---DMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGIL 300 (358)
Q Consensus 236 Ivat~~~~~------------~~~l~---~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIl 300 (358)
+++++.... +.++. +.++++|++||||||+.||++++++.||..|+|||.|.++|||||+|+||+
T Consensus 85 v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfG~E~~GLs~~~l~~~d~~v~IPm~g~~~SLNvs~AaaI~ 164 (173)
T 3kty_A 85 AFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLA 164 (173)
T ss_dssp EEEEECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTSSEEEECCCCSTTCCCCHHHHHHHH
T ss_pred EEEEccccccCCCCccCHHHHHHHHhhhhccccCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCeEeHHHHHHHH
Confidence 888887532 23566 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 018308 301 MHHAVCDR 308 (358)
Q Consensus 301 Lye~~rqr 308 (358)
|||++||.
T Consensus 165 lye~~r~~ 172 (173)
T 3kty_A 165 AWELRYAL 172 (173)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
No 13
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=100.00 E-value=3.8e-35 Score=276.11 Aligned_cols=167 Identities=17% Similarity=0.192 Sum_probs=138.5
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeE-EEeCChHHHHHHHHHcCceEEE
Q 018308 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDI-ELWDAPRECFNVLRSRGYRIAT 238 (358)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v-~~~~nl~~~l~~Lk~~G~~Iva 238 (358)
.+.||||+++||+|+|+|+|||++||+++|+++.+. ...+++.|+|+||.++++. ..++++.++++.++ ++++
T Consensus 7 ~l~vVL~~~~dP~NiGai~Rta~a~G~~~l~lv~p~--~~~~~a~r~A~GA~~~l~~~~~~~~l~eal~~~~----~vva 80 (244)
T 3ilk_A 7 NIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNARVVDSFDEAVDDCS----LVIG 80 (244)
T ss_dssp TEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCS--CCSHHHHHTTTTCHHHHHHCEEESSHHHHTTTCS----EEEE
T ss_pred CcEEEEECCCCcChHHHHHHHHHHhCCCEEEEECCC--CCCHHHHHHcCChhheeceeEEeCCHHHHHHhCC----eEEE
Confidence 588999999999999999999999999999999876 4456788999999998884 45689999987653 7888
Q ss_pred eecCCCceeecc----------cCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHHhh
Q 018308 239 THVGMDAISVYD----------MDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVCDR 308 (358)
Q Consensus 239 t~~~~~~~~l~~----------~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~rqr 308 (358)
|+.......... +++.+|++||||||+.||++++++.||.+|+|||.|.++|||||+|++|+|||++||+
T Consensus 81 tt~~~~~~~~~~~~p~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~~~~~SLNva~A~aI~lyE~~rq~ 160 (244)
T 3ilk_A 81 TSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAF 160 (244)
T ss_dssp ECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred EccCCCCCCcccCCHHHHHHHHhhcCCCEEEEECCCCCCCCHHHHHhCCeEEEecCCCCCCeeeHHHHHHHHHHHHHHHh
Confidence 887543221111 2357899999999999999999999999999999999999999999999999999987
Q ss_pred hhc---c----cCCCCCCCHHHHHHHHHHHH
Q 018308 309 ATR---L----VGCNGDLTSEEKQILLAEFS 332 (358)
Q Consensus 309 ~~~---~----~~~~~~Ls~eE~~~l~~~~~ 332 (358)
... . .......+.+|.+.++.+|-
T Consensus 161 ~~~~~~~~~~~~~~~~~a~~~e~e~~~~~l~ 191 (244)
T 3ilk_A 161 LVQNNKKNSLSLIEKNYPTTDQLAYFFDYTE 191 (244)
T ss_dssp HHHHHHHHHTTC-CCCCCCHHHHHHHHHHHH
T ss_pred hccccCCCCccccCCCCCCHHHHHHHHHHHH
Confidence 542 1 12335578899999988883
No 14
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=100.00 E-value=3.2e-35 Score=277.34 Aligned_cols=166 Identities=15% Similarity=0.113 Sum_probs=122.4
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEE-EeCChHHHHHHHHHcCceEEE
Q 018308 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIE-LWDAPRECFNVLRSRGYRIAT 238 (358)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~-~~~nl~~~l~~Lk~~G~~Iva 238 (358)
++.||||+++||+|+|+|+|||++||+++++++.+.+.....++.+.|+|+.+.++.. .++|+.++++.+ .++++
T Consensus 4 ~~~vVL~~~~dP~NiGai~Rta~a~G~~~l~Lv~p~~~~~~~~a~~~a~GA~~~l~~~~~~~~l~eal~~~----~~v~a 79 (249)
T 3onp_A 4 EPVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTVAEAIRDC----DYVFA 79 (249)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCSSCHHHHHHHGGGHHHHHTCEEESSHHHHHTTC----SEEEE
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCcCCCcHHHHHHcCCccccCceEEEeCCHHHHHHhC----CeEEE
Confidence 5789999999999999999999999999999998864444567888999999877644 469999998765 36888
Q ss_pred eecCCCceeecccCC---------------CCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHH
Q 018308 239 THVGMDAISVYDMDW---------------SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHH 303 (358)
Q Consensus 239 t~~~~~~~~l~~~~~---------------~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye 303 (358)
|+... .++.+.++ .+|+|||||||+.||++++++.||.+|+|||.|.++|||||+|++|+|||
T Consensus 80 tt~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~~~~~SLNva~A~aI~lYE 157 (249)
T 3onp_A 80 TTARG--RELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYE 157 (249)
T ss_dssp EESSC--CCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEEEECCCCTTCCCCCHHHHHHHHHHH
T ss_pred EcCCC--CCCCcccCCHHHHHHHHHHhhccCCCEEEEECCCcCCCCHHHHHhCCeEEEEcCCCCCCceeHHHHHHHHHHH
Confidence 88754 34544433 35999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccc-----CCCCCCCHHHHHHHHHHH
Q 018308 304 AVCDRATRLV-----GCNGDLTSEEKQILLAEF 331 (358)
Q Consensus 304 ~~rqr~~~~~-----~~~~~Ls~eE~~~l~~~~ 331 (358)
+.||+..... ......+.+|.+.++.+|
T Consensus 158 ~~rq~~~~~~~~~~~~~~~~a~~~e~e~~~~~l 190 (249)
T 3onp_A 158 WRRQHDETPPEVIDMARVDFASGLEVEKLGDHF 190 (249)
T ss_dssp HHHC-----------------------------
T ss_pred HHHhhcccCCccccccCCCCCCHHHHHHHHHHH
Confidence 9999864331 122346677788887777
No 15
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=100.00 E-value=2.1e-34 Score=267.50 Aligned_cols=168 Identities=17% Similarity=0.172 Sum_probs=133.3
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccc-------------------cchhhhhcCCCceeEeE-EEe
Q 018308 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKR-------------------YRENRHVSMGAEKWLDI-ELW 219 (358)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~-------------------~~~~~r~S~Ga~~~v~v-~~~ 219 (358)
.++||||+++||+|+|+|+|||++||+++|+++.+.+.+. +.++.++|+|+.++++. ..+
T Consensus 17 ~l~vVLd~~~dP~NiGaI~Rta~afG~~~l~Lv~p~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~aaGA~~~l~~~~v~ 96 (223)
T 3ic6_A 17 NIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEIV 96 (223)
T ss_dssp GEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHGGGHHHHHTCEEE
T ss_pred CEEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCccccccccccccccccccccccCCHHHHHHhCCccccCceEEEe
Confidence 5899999999999999999999999999999998765332 13688999999998875 446
Q ss_pred CChHHHHHHHHHcCceEEEeecCCCcee------------eccc-CCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCC
Q 018308 220 DAPRECFNVLRSRGYRIATTHVGMDAIS------------VYDM-DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKG 286 (358)
Q Consensus 220 ~nl~~~l~~Lk~~G~~Ivat~~~~~~~~------------l~~~-~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G 286 (358)
+++.++++.+ +++++++..++... +.++ ++.+|++||||||+.||++++++.||.+|+|||.|
T Consensus 97 ~~l~eal~~~----~~vvatt~~~~~~~~~~~~p~e~a~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~IPm~~ 172 (223)
T 3ic6_A 97 ATLDEALADT----TIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNP 172 (223)
T ss_dssp SCHHHHHTTE----EEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCSEEECCCCCT
T ss_pred CCHHHHHHhC----CeEEEEeccCCcccccccCHHHHHHHHHHhhcccCCEEEEECCCCCCCCHHHHHhCceEEEecCCC
Confidence 8988887654 57899987654321 1122 34689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhhhhccc---CCCCCCCHHHHHHHHHHH
Q 018308 287 MVDSFNVSVAAGILMHHAVCDRATRLV---GCNGDLTSEEKQILLAEF 331 (358)
Q Consensus 287 ~veSLNVSvAaaIlLye~~rqr~~~~~---~~~~~Ls~eE~~~l~~~~ 331 (358)
.++|||||+|++|+|||++||+..... ......+.+|.+.++.+|
T Consensus 173 ~~~SLNva~A~aI~lye~~rq~~~~~~~~~~~~~~a~~~~~e~~~~~l 220 (223)
T 3ic6_A 173 DYFSLNLAQAVQVVCYEIFSQTDSPMTHLQQEDHAATHEQIKGMLAHM 220 (223)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTTTSCCCCCCC--CCCCHHHHHHHHTTC
T ss_pred CCCeeEHHHHHHHHHHHHHHhhccCCCCCCcCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999832110 112345677777766554
No 16
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=99.74 E-value=7.6e-18 Score=152.86 Aligned_cols=144 Identities=19% Similarity=0.206 Sum_probs=111.8
Q ss_pred cEEEEEec-CCCCCc------------HHHHHHHHHHhCCCEEEEecCCCccccchhhh------hcCCC------ceeE
Q 018308 160 SVCLVVEG-LSDFGN------------VSATFRSADALGVQSVHVVSCDSSKRYRENRH------VSMGA------EKWL 214 (358)
Q Consensus 160 ~l~vVLd~-i~dP~N------------lGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r------~S~Ga------~~~v 214 (358)
.+.|+|.+ +--.+| +|.|+|+|..||++.++++.|..... ..+.+ .+.|+ .+-+
T Consensus 4 ~~~v~LvhyPv~~~~~~~~~t~vtn~dihdiARamkt~Gl~~l~LV~P~~~~~-~~a~~~~~~w~~~~Ga~~np~r~d~L 82 (192)
T 3dcm_X 4 KVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQ-DMVSKMLKFWREGFGSRYNPSRAESL 82 (192)
T ss_dssp SEEEEEECSSEECTTCSEECCCCCHHHHHHHHHHHHHTTCSEEEEECCCHHHH-HHHHHHHHHHHTSGGGGTCSSSHHHH
T ss_pred ceEEEEecccccCCCCCEeeeecccccHHHHHHHHHhcCCceEEEECCccccH-HHHHHHHHhhhcccCcccCcCHHHHh
Confidence 46777775 666677 99999999999999999999864321 11222 24555 2232
Q ss_pred -eEEEeCChHHHHHHHHH---cCceEEEeecCCC--ceeeccc-----CCCCCEEEEEcCCCCCCCHHHHhcCCcEE-EE
Q 018308 215 -DIELWDAPRECFNVLRS---RGYRIATTHVGMD--AISVYDM-----DWSCPTAIVVGNENRGVSDEALSLSDLRC-SI 282 (358)
Q Consensus 215 -~v~~~~nl~~~l~~Lk~---~G~~Ivat~~~~~--~~~l~~~-----~~~~~~aLV~GnE~~GLs~e~l~~cD~~v-~I 282 (358)
.+..+++++++++.+.+ +++.++||+.... ..+..++ ...+|++||||+ +.||++|+++.||.++ .|
T Consensus 83 ~~a~vv~sL~eAl~~~~~~~g~~p~vvaTsAr~~~~~i~~~el~~~i~~~~~pvalvFG~-~~GLtneel~~cd~~l~~I 161 (192)
T 3dcm_X 83 KLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGT-GWGLPDEILEISDYVLEPI 161 (192)
T ss_dssp TTEEEESSHHHHHHHHHHHHSSCCEEEECCSSCCSSCBCHHHHHHHHHHCCSCEEEEECC-TTCCCHHHHTTCSEEBCCT
T ss_pred ccCeEECCHHHHHHHHHhhcCCccEEEEeCCCcCCCCCCHHHHHHHHHhCCCCEEEEECC-CCCCCHHHHHhcCEEEccC
Confidence 35567899999999974 5788999987532 2333332 246899999999 6999999999999999 89
Q ss_pred CCCCCCCcccHHHHHHHHHHHHH
Q 018308 283 PMKGMVDSFNVSVAAGILMHHAV 305 (358)
Q Consensus 283 Pm~G~veSLNVSvAaaIlLye~~ 305 (358)
|..+.+.||||++|++|+||+++
T Consensus 162 p~~~eY~~Lnl~~AVaIiLdrl~ 184 (192)
T 3dcm_X 162 RAQSDFNHLSVRAAAAIIIDRLI 184 (192)
T ss_dssp TTTSSCCCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCccCHHHHHHHHHHHHc
Confidence 99999999999999999999996
No 17
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=95.94 E-value=0.02 Score=50.44 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=74.7
Q ss_pred HHHHHHHhCCCEEEEecCCCccccchhh--hhcCCCceeEeEEEeCChHHHHHHHHHcCceEEEeecCCCceeeccc---
Q 018308 177 TFRSADALGVQSVHVVSCDSSKRYRENR--HVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDM--- 251 (358)
Q Consensus 177 IlRTA~afGv~~Vii~~~~~~~~~~~~~--r~S~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~Ivat~~~~~~~~l~~~--- 251 (358)
+.-||-|||++++++.+. .......+. -..-|+.|++. ..++...++.. |..++.++.=+ .++.++
T Consensus 24 V~LtARAfGA~~iil~~~-D~~v~esv~dV~~rwGG~F~ve---~~~w~~~i~~w---~G~VVHLTMYG--~~i~dvi~~ 94 (178)
T 2o3a_A 24 VALTARAFGAKGIYFDTE-DKSVFESVRDVVERWGGDFFIK---AVSWKKLLREF---DGLKVHLTMYG--IPLPQKLEE 94 (178)
T ss_dssp HHHHHHHTTCSEEEESSC-CHHHHHHHHHHHHHHCSCCEEE---ECCHHHHHHHC---CSEEEEEEEEE--EEHHHHHHH
T ss_pred HHHHHHHhCCCeeEEeCC-CHHHHHHHHHHHHhcCCceEEE---ecCHHHHHHHc---CCEEEEEecCC--CchHHHHHH
Confidence 456899999999987654 211122222 23458888776 36777776655 77888887643 333332
Q ss_pred -CCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHH
Q 018308 252 -DWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAV 305 (358)
Q Consensus 252 -~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~ 305 (358)
.-..+..+|+|.|. ++.++-+.||+.|.|---+.-| ..|.||+|-.++
T Consensus 95 Ir~~~~iLvVVGaeK--VP~evYelADyNVaVgnQPHSE----VAALAvFLDrl~ 143 (178)
T 2o3a_A 95 IKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPHSE----VAALAVFLDRVL 143 (178)
T ss_dssp HHTCSEEEEEEC------CTTHHHHSSEEEESSSSCCCH----HHHHHHHHHHHT
T ss_pred hhcCCCEEEEECCCc--CCHHHHhhcCcceeeCCCChHH----HHHHHHHHHHhh
Confidence 22678999999997 9999999999999986443332 357788888776
No 18
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=95.91 E-value=0.02 Score=51.28 Aligned_cols=117 Identities=17% Similarity=0.183 Sum_probs=79.5
Q ss_pred HHHHHHHhCCCEEEEecCCCccccchhhh--hcCCCceeEeEEEeCChHHHHHHHHHcCceEEEeecCCCceeeccc---
Q 018308 177 TFRSADALGVQSVHVVSCDSSKRYRENRH--VSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAISVYDM--- 251 (358)
Q Consensus 177 IlRTA~afGv~~Vii~~~~~~~~~~~~~r--~S~Ga~~~v~v~~~~nl~~~l~~Lk~~G~~Ivat~~~~~~~~l~~~--- 251 (358)
+.-||-|||++++++...........+.+ ..-|+.|++.+. .++...++.. |..|+.+++=+ .++.++
T Consensus 21 V~LtARAfGA~~iil~~~~D~~v~esv~dV~~rWGG~F~ve~~--~~wk~~ik~w---gG~VVHLTMYG--~~i~dvi~e 93 (201)
T 2yy8_A 21 VALTARAFGADGIIIASEEDEKVKESVEDVVKRWGGPFFIEFN--RNWRKVMKEF---TGVKVHLTMYG--LHVDDVIEE 93 (201)
T ss_dssp HHHHHHHTTCSEEEESSSCCHHHHHHHHHHHHHHCSCCBCCBC--SCHHHHHHHC---CSEEEEEEEEE--EEHHHHHHH
T ss_pred HHHHHHHhcCCeEEEcCCcChhHHHHHHHHHHhcCCceEEEEC--CCHHHHHHhc---CCEEEEEecCC--CchHHHHHH
Confidence 45689999999998765422222222222 345887776543 6766666555 77888888643 334333
Q ss_pred -C----CCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHHHHHH
Q 018308 252 -D----WSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMHHAVC 306 (358)
Q Consensus 252 -~----~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLye~~r 306 (358)
. -..+..+|+|.|. ++.++-+.||+.|.|---+.-+ ..|.||+|-.++.
T Consensus 94 Ir~~~~~~~~iLVVVGaeK--VP~evYelADyNVaVgnQPHSE----VAALAvFLDrl~~ 147 (201)
T 2yy8_A 94 LKEKLKKGEDFMIIVGAEK--VPREVYELADYNVAIGNQPHSE----VAALAVLLDRLLE 147 (201)
T ss_dssp HHHHHHTTCCEEEEECSSC--CCHHHHHHCSEEEESSSSCCCH----HHHHHHHHHHHTT
T ss_pred HHhhcccCCCEEEEECCCc--CCHHHHhhcCcceeeCCCChHH----HHHHHHHHHHhcC
Confidence 2 1468999999997 9999999999999986543332 3577888888875
No 19
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=93.46 E-value=0.48 Score=42.74 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=66.1
Q ss_pred CChHHHHHHHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHH----HHhcCCcEEEECCCCCCCcccHHH
Q 018308 220 DAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE----ALSLSDLRCSIPMKGMVDSFNVSV 295 (358)
Q Consensus 220 ~nl~~~l~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e----~l~~cD~~v~IPm~G~veSLNVSv 295 (358)
.++++.++++.+.| +++-++..+ .++.+..++...++|+|- ..|++++ +.+.++..++| |. .+|=.++
T Consensus 112 ~sle~ll~e~~~~~-~v~~L~E~G--~~i~~~~~~~~~~fvlGd-H~~f~~e~~~~l~~~~~~~iSi---gp-~~L~A~~ 183 (197)
T 2qmm_A 112 KGLEELIEELSEKY-SIIYLKEDG--VDISNAQLPPNPLFVIGD-HEGLTEEQEKVVERYAALKLSL---SP-LSLLAEQ 183 (197)
T ss_dssp CCHHHHHHHHHHHS-EEEEEEEEE--EEGGGSCCCSSEEEEEEC-TTCCCHHHHHHHHTTCSEEEEC---CS-SCCCHHH
T ss_pred CCHHHHHHHhhcCC-cEEEEcCCC--CCCchhhcCCCCEEEEeC-CCCCCHHHHHHHHHhcCeEEEE---CC-chhHHHH
Confidence 68899999998665 588887764 567777777888999999 8899999 78888888888 22 7999999
Q ss_pred HHHHHHHHHHHh
Q 018308 296 AAGILMHHAVCD 307 (358)
Q Consensus 296 AaaIlLye~~rq 307 (358)
+++++-+++-+.
T Consensus 184 vi~~vh~~ld~~ 195 (197)
T 2qmm_A 184 CVVIAHHHLDRL 195 (197)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999998654
No 20
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=91.12 E-value=1.7 Score=39.49 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=65.9
Q ss_pred eCChHHHHHHHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHH---H-HhcCCcEEEECCCCCCCcccHH
Q 018308 219 WDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDE---A-LSLSDLRCSIPMKGMVDSFNVS 294 (358)
Q Consensus 219 ~~nl~~~l~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e---~-l~~cD~~v~IPm~G~veSLNVS 294 (358)
..++++.++++.+.|..++-++..+ .++.+..+ ...++|+|- ..|++++ . .+.++..++| |. .+|=.+
T Consensus 122 ~~sle~ll~e~~~~~~~v~~L~E~G--~~i~~~~~-~~~~fvlGd-H~~f~~e~~~~L~~~~~~~iSi---gp-~~L~A~ 193 (211)
T 3aia_A 122 RLGFRNLVLEKLEEGKNIYYLHMNG--EDVENVDI-ENPVFIIGD-HIGIGEEDERFLDEIKAKRISL---SP-LELHAN 193 (211)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEEEEE--EEGGGCCC-CSEEEEEEC-SSCSCHHHHHHHHHTTCEEEEC---CS-SCCCHH
T ss_pred cCCHHHHHHHHhhcCCcEEEEcCCC--CCCccccc-CCcEEEEEC-CCCCCHHHHHHHHhhCCeEEEE---CC-cchHHH
Confidence 3688999999988887788888765 56777777 788999998 7799999 5 5677888888 22 799999
Q ss_pred HHHHHHHHHHHHh
Q 018308 295 VAAGILMHHAVCD 307 (358)
Q Consensus 295 vAaaIlLye~~rq 307 (358)
+++.++-+++-+.
T Consensus 194 hvi~~vh~~LD~~ 206 (211)
T 3aia_A 194 HCITIIHNVLDKK 206 (211)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccc
Confidence 9999999998644
No 21
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=86.19 E-value=1.6 Score=39.61 Aligned_cols=80 Identities=6% Similarity=-0.057 Sum_probs=55.7
Q ss_pred eCChHHHHHHHHHcCceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcC----CcEEEECCCCCCCcccHH
Q 018308 219 WDAPRECFNVLRSRGYRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLS----DLRCSIPMKGMVDSFNVS 294 (358)
Q Consensus 219 ~~nl~~~l~~Lk~~G~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~c----D~~v~IPm~G~veSLNVS 294 (358)
-.++++.++++++.|. +|-++.++ .++.++.+++..++|+| ...|++++..+.- +..|+|- -.+|=.+
T Consensus 120 ~~~fe~ll~e~~~~~~-ly~L~e~G--~di~~~~~~~~~~FvLg-DH~g~~~eee~~L~~~~~~~iSlG----P~~l~A~ 191 (208)
T 2qwv_A 120 TISFEALLGELAEHHS-LYMMDKKG--DSIRDIKIGPNPCFILT-DHIPMPKKSGNSMKRLGVEKISLG----PKMLFAS 191 (208)
T ss_dssp CCCHHHHHHHHHTTSE-EEEEEEEE--EETTTSCCCSSEEEEEC-C----------CTTTTTCEEEECC----SSCCCHH
T ss_pred cCCHHHHHHHHHhcCc-EEEEeCCC--cCHhhccCCCCCEEEEc-CCCCCCHHHHHHHHhcCCeEEEeC----chHHHHH
Confidence 3689999999987764 88888764 78999998899999999 6899999976544 4555552 4589999
Q ss_pred HHHHHHHHHHHH
Q 018308 295 VAAGILMHHAVC 306 (358)
Q Consensus 295 vAaaIlLye~~r 306 (358)
++..++-+++-+
T Consensus 192 hcI~~vhn~LD~ 203 (208)
T 2qwv_A 192 QCVTLIHNEIDH 203 (208)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999853
No 22
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=79.52 E-value=12 Score=34.54 Aligned_cols=150 Identities=9% Similarity=0.040 Sum_probs=78.8
Q ss_pred cEEEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCC-Ccccc------chhhhh-cC-CCceeEeEE-EeCChHHHHHHH
Q 018308 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCD-SSKRY------RENRHV-SM-GAEKWLDIE-LWDAPRECFNVL 229 (358)
Q Consensus 160 ~l~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~-~~~~~------~~~~r~-S~-Ga~~~v~v~-~~~nl~~~l~~L 229 (358)
.+.|+.--+....-+=-+++-|--+||+.|+.+... +.... .+.... +. ..--++|-+ ...++.++++.+
T Consensus 78 ~i~L~~al~K~~dr~d~iiqKatELGV~~I~p~~s~rs~k~~~k~eRw~~I~~eAaeQs~R~~~P~v~~~~~~~~~l~~~ 157 (257)
T 3kw2_A 78 RITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIADT 157 (257)
T ss_dssp CEEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHHS
T ss_pred ceEEEEecCCCcchHHHHHHHHHhhCCCEEEEEEeecchhhhhhHHHHHHHHHHHHHHcCCCcCCEecCcCCHHHHHhhc
Confidence 444444322223345667999999999999866432 22111 111112 11 223466643 445778887765
Q ss_pred HHcCceEEEeecCC------CceeecccC--CCCCEEEEEcCCCCCCCHHHHhcCCc--EEEECCCCCCCcccHHH----
Q 018308 230 RSRGYRIATTHVGM------DAISVYDMD--WSCPTAIVVGNENRGVSDEALSLSDL--RCSIPMKGMVDSFNVSV---- 295 (358)
Q Consensus 230 k~~G~~Ivat~~~~------~~~~l~~~~--~~~~~aLV~GnE~~GLs~e~l~~cD~--~v~IPm~G~veSLNVSv---- 295 (358)
...+..+++..... ...++.+.. ..++++|++|.|| |+|++.++.+-. ...+-+...+ |=.-.
T Consensus 158 ~~~~~~li~~~~e~~~~~~~~~~~l~~~~~~~~~~v~l~IGPEG-Gfs~~Ei~~~~~~Gf~~vsLG~rI--LRtETA~i~ 234 (257)
T 3kw2_A 158 PKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEG-DFSPSEVESALLAGFAPVSLGESR--LRTETAGLV 234 (257)
T ss_dssp CTTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTT-CCCHHHHHHHHHHTCEEECCCSSC--CCHHHHHHH
T ss_pred cccCCEEEEEcccccccccccccchhHhhccCCCcEEEEECCCC-CCCHHHHHHHHHCCCEEEcCCCCc--chHHHHHHH
Confidence 44555555542211 123343322 2468999999997 999999987643 2344443322 33322
Q ss_pred HHHHHHHHHHHhhhhcc
Q 018308 296 AAGILMHHAVCDRATRL 312 (358)
Q Consensus 296 AaaIlLye~~rqr~~~~ 312 (358)
|++++.|..-.-|+..+
T Consensus 235 als~~~~~~~~~~~~~~ 251 (257)
T 3kw2_A 235 ACQWIHTLQACYRIGEG 251 (257)
T ss_dssp HHHHHHHHHHHTCCC--
T ss_pred HHHHHHHHhhccccccC
Confidence 33444555444454443
No 23
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=79.11 E-value=11 Score=35.10 Aligned_cols=142 Identities=7% Similarity=0.043 Sum_probs=78.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhCCCEEEEecC-CCcccc---------chhhhhc-----CCCceeEeEE-EeCChHHH
Q 018308 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSC-DSSKRY---------RENRHVS-----MGAEKWLDIE-LWDAPREC 225 (358)
Q Consensus 162 ~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~-~~~~~~---------~~~~r~S-----~Ga~~~v~v~-~~~nl~~~ 225 (358)
+.++-.+-.+..+=-|++-|--+||+.|+.+.. .+...+ ..-.+.+ ...--++|-+ ...++.++
T Consensus 83 v~L~~al~K~~r~e~ilqkatELGV~~I~p~~s~Rsv~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~~~~ 162 (268)
T 1vhk_A 83 VYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQL 162 (268)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHHHH
T ss_pred EEEEEeeecCccHHHHHHHHHHhCcCEEEEEEeeeeeeecccchhhhHHHHHHHHHHHHHHHcCCCCCcEEecCCCHHHH
Confidence 445557788899999999999999999987754 221111 0111111 1233456644 45688888
Q ss_pred HHHHHHcCceEEEeecCCC-ceee------cccCCCCCEEEEEcCCCCCCCHHHHhcCCc--EEEECCCCC-CCcccHHH
Q 018308 226 FNVLRSRGYRIATTHVGMD-AISV------YDMDWSCPTAIVVGNENRGVSDEALSLSDL--RCSIPMKGM-VDSFNVSV 295 (358)
Q Consensus 226 l~~Lk~~G~~Ivat~~~~~-~~~l------~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~--~v~IPm~G~-veSLNVSv 295 (358)
++.....+..++.-..... ..++ .++.-.++++|++|.|| |+|++.++.... ...+.+... ..+=-.++
T Consensus 163 l~~~~~~~~~lv~~e~~~~~~~~l~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~~G~~~vsLG~rILRtETA~i 241 (268)
T 1vhk_A 163 LQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVERLTEQDGVTCGLGPRILRTETAPL 241 (268)
T ss_dssp HHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHHHHHTTCEEECCCSSCCCTTTHHH
T ss_pred HhhCccCCeEEEEecCcccccccccccccchhccCCCcEEEEEcCCC-CCCHHHHHHHHHCCCEEecCCCCeeehHHHHH
Confidence 8765433444444332111 1123 33322237999999998 999999776532 344555332 23333333
Q ss_pred H-HHHHHHHH
Q 018308 296 A-AGILMHHA 304 (358)
Q Consensus 296 A-aaIlLye~ 304 (358)
+ .++++|.+
T Consensus 242 ~als~l~~~~ 251 (268)
T 1vhk_A 242 YALSAISYQT 251 (268)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3 34444443
No 24
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=60.63 E-value=25 Score=32.23 Aligned_cols=131 Identities=11% Similarity=0.115 Sum_probs=75.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCC-Cccccc------h---hhhhcC-----CCceeEeEE-EeCChHHH
Q 018308 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSCD-SSKRYR------E---NRHVSM-----GAEKWLDIE-LWDAPREC 225 (358)
Q Consensus 162 ~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~-~~~~~~------~---~~r~S~-----Ga~~~v~v~-~~~nl~~~ 225 (358)
+.++-.+-.+..+=-|++-|--+||+.|+.+... +...+. + -.+.+. ..--++|-+ ...++.++
T Consensus 80 v~L~~al~K~~r~e~ilqkatELGv~~I~p~~t~rsv~~~~~~k~~~k~~Rw~~I~~eAaeQs~R~~iP~v~~~~~~~~~ 159 (251)
T 4e8b_A 80 IHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAW 159 (251)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHTTCCEEEEEECTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCBCCCEEHHHH
T ss_pred EEEEEEeechhHHHHHHHHHHhhCCCEEEEEEeeeEEeecchhhhhhHHHHHHHHHHHHHHhcCCCcCcEECCcCCHHHH
Confidence 4455677888899999999999999999866432 221111 0 111111 222456633 33455555
Q ss_pred HHHHHHcCceEEEeecCCCceeecccCC-CCCEEEEEcCCCCCCCHHHHhcCCc--EEEECCCCCCCcccHHHHHH
Q 018308 226 FNVLRSRGYRIATTHVGMDAISVYDMDW-SCPTAIVVGNENRGVSDEALSLSDL--RCSIPMKGMVDSFNVSVAAG 298 (358)
Q Consensus 226 l~~Lk~~G~~Ivat~~~~~~~~l~~~~~-~~~~aLV~GnE~~GLs~e~l~~cD~--~v~IPm~G~veSLNVSvAaa 298 (358)
++.. ..+..++. .... ..++.+++. .++++|++|.|| |+|++.++.+.. ...+.+...+ |=.-.|+-
T Consensus 160 l~~~-~~~~~~~~-~~~~-~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~~Gf~~vsLG~rI--LRtETA~i 229 (251)
T 4e8b_A 160 CAEQ-DEGLKLNL-HPRA-SNSINTLPLPVERVRLLIGPEG-GLSADEIAMTARYQFTDILLGPRV--LRTETTAL 229 (251)
T ss_dssp HHCC-CSSEEEEE-CTTC-SCBGGGSCSCCCEEEEEECCTT-CCCHHHHHHHHHTTCEEEBCCSSC--CCHHHHHH
T ss_pred Hhhc-CcCceEee-chhh-hCchhhccccCCcEEEEECCCC-CCCHHHHHHHHHCCCEEecCCCCc--eeHHHHHH
Confidence 5432 23434433 3322 345555554 457899999997 999999887643 2455554333 44444433
No 25
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=53.55 E-value=6.2 Score=34.02 Aligned_cols=72 Identities=10% Similarity=0.140 Sum_probs=45.3
Q ss_pred HHHHHHcCceEEEeecCCCceeecccCC----------CCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHH
Q 018308 226 FNVLRSRGYRIATTHVGMDAISVYDMDW----------SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSV 295 (358)
Q Consensus 226 l~~Lk~~G~~Ivat~~~~~~~~l~~~~~----------~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSv 295 (358)
++.++ .+ .+++++..+ +.+....| ...++||+|. ..|+++++++.||..+++.- + .|.=-.
T Consensus 61 l~~i~-~~-~vi~Ld~~G--k~~sS~~fA~~l~~~~~~g~~i~FvIGG-~~Gl~~~v~~rA~~~lSlS~--m--T~pHql 131 (155)
T 1ns5_A 61 LAAAG-KN-RIVTLDIPG--KPWDTPQLAAELERWKLDGRDVSLLIGG-PEGLSPACKAAAEQSWSLSA--L--TLPHPL 131 (155)
T ss_dssp HHHHT-TS-EEEEEEEEE--ECCCHHHHHHHHHHHHHHCSCEEEEECB-TTBCCHHHHHHCSEEECCCS--S--CCCHHH
T ss_pred HHhcC-CC-cEEEEcCCC--CcCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCCCHHHHHhhCceEEccC--C--CCcHHH
Confidence 33443 35 488888765 33333322 1469999998 78999999999998766531 1 233344
Q ss_pred HHHHHHHHHHH
Q 018308 296 AAGILMHHAVC 306 (358)
Q Consensus 296 AaaIlLye~~r 306 (358)
+--|++-.++|
T Consensus 132 ~RliL~EQiYR 142 (155)
T 1ns5_A 132 VRVLVAESLYR 142 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55556555665
No 26
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=52.91 E-value=7.8 Score=33.71 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=42.9
Q ss_pred CceEEEeecCCCceeecccCC---------C--CCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHH
Q 018308 233 GYRIATTHVGMDAISVYDMDW---------S--CPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301 (358)
Q Consensus 233 G~~Ivat~~~~~~~~l~~~~~---------~--~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlL 301 (358)
+-.+++++..+ +.+....| . ..++||+|. ..|+++++++.||..+++.- + .|.=-.+--|++
T Consensus 74 ~~~vI~LD~~G--k~~sS~~fA~~l~~~~~~g~~~i~FvIGG-~~Gl~~~v~~rA~~~lSlS~--m--TfpHqL~RliL~ 146 (163)
T 4fak_A 74 QSTVITLEIQG--KMLSSEGLAQELNQRMTQGQSDFVFVIGG-SNGLHKDVLQRSNYALSFSK--M--TFPHQMMRVVLI 146 (163)
T ss_dssp TSEEEEEEEEE--EECCHHHHHHHHHHHHHTTCCEEEEEECB-TTBCCHHHHHHCSEEEESCS--S--CCCHHHHHHHHH
T ss_pred CCEEEEEcCCC--CcCCHHHHHHHHHHHHhcCCcceEEEEEC-CCccCHHHHHhcCceEEEec--C--CCCHHHHHHHHH
Confidence 55677888765 33333222 2 368999998 79999999999998877642 1 233333444555
Q ss_pred HHHHH
Q 018308 302 HHAVC 306 (358)
Q Consensus 302 ye~~r 306 (358)
-+++|
T Consensus 147 EQlYR 151 (163)
T 4fak_A 147 EQVYR 151 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55555
No 27
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=47.20 E-value=9.5 Score=33.26 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=43.8
Q ss_pred CceEEEeecCCCceeecccC---------CC--CCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHH
Q 018308 233 GYRIATTHVGMDAISVYDMD---------WS--CPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILM 301 (358)
Q Consensus 233 G~~Ivat~~~~~~~~l~~~~---------~~--~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlL 301 (358)
+..+++++..+. .+.... .. ..++||+|. ..|+++++++.||..+++.- + .|.=-.+--|++
T Consensus 70 ~~~vI~LD~~Gk--~~sS~~fA~~l~~~~~~G~~~i~FvIGG-a~Gl~~~v~~rA~~~lSlS~--m--TfpHqL~RliL~ 142 (167)
T 1to0_A 70 DAHVIALAIEGK--MKTSEELADTIDKLATYGKSKVTFVIGG-SLGLSDTVMKRADEKLSFSK--M--TFPHQLMRLILV 142 (167)
T ss_dssp TSEEEEEEEEEE--ECCHHHHHHHHHHHHTTTCCEEEEEECC-SSCCCHHHHHHCSEEEESCS--S--CCCHHHHHHHHH
T ss_pred CCEEEEEcCCCC--cCCHHHHHHHHHHHHhcCCceEEEEEEC-CCCCCHHHHHhhCcEEEccC--C--CCcHHHHHHHHH
Confidence 445777776653 333222 12 368999998 78999999999998877642 1 344445555666
Q ss_pred HHHHH
Q 018308 302 HHAVC 306 (358)
Q Consensus 302 ye~~r 306 (358)
-.++|
T Consensus 143 EQiYR 147 (167)
T 1to0_A 143 EQIYR 147 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 28
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=46.71 E-value=9.4 Score=33.19 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=44.9
Q ss_pred CceEEEeecCCCceeecccCC----------CCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHH
Q 018308 233 GYRIATTHVGMDAISVYDMDW----------SCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302 (358)
Q Consensus 233 G~~Ivat~~~~~~~~l~~~~~----------~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLy 302 (358)
+..+++++..+ +.+....| ...++||+|. ..|+++++++.||..+++.- + .|.=-.+--|++-
T Consensus 65 ~~~vI~LD~~G--k~~sS~~fA~~l~~~~~~G~~i~FvIGG-a~Gl~~~v~~rAd~~lSlS~--m--TfpHqL~RliL~E 137 (163)
T 1o6d_A 65 GSFVMVMDKRG--EEVSSEEFADFLKDLEMKGKDITILIGG-PYGLNEEIFAKAHRVFSLSK--M--TFTHGMTVLIVLE 137 (163)
T ss_dssp TCEEEEEEEEE--EECCHHHHHHHHHHHHHHTCCEEEEECC-TTCCCGGGGGGCSEEEECCS--S--CCCHHHHHHHHHH
T ss_pred CCEEEEEcCCC--CcCCHHHHHHHHHHHHhcCCeEEEEEEC-CCCCCHHHHHhhCceEEccC--C--CCcHHHHHHHHHH
Confidence 44578888765 33333322 1469999998 78999999999998877642 1 3444455566666
Q ss_pred HHHH
Q 018308 303 HAVC 306 (358)
Q Consensus 303 e~~r 306 (358)
+++|
T Consensus 138 QiYR 141 (163)
T 1o6d_A 138 QIFR 141 (163)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
No 29
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=46.46 E-value=37 Score=30.55 Aligned_cols=133 Identities=17% Similarity=0.148 Sum_probs=75.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhCCCEEEEecC-CCcccc------chhhhhc-----CCCceeEeEEE-eCChHHHHHH
Q 018308 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSC-DSSKRY------RENRHVS-----MGAEKWLDIEL-WDAPRECFNV 228 (358)
Q Consensus 162 ~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~-~~~~~~------~~~~r~S-----~Ga~~~v~v~~-~~nl~~~l~~ 228 (358)
+.++-.+-.+..+=-+++-|--+||+.|+.+.. .+...+ ..-.+.+ ...--++|-+. ..++.++++
T Consensus 73 v~L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~k~~Rw~~i~~eAaeQs~r~~~P~v~~~~~~~~~l~- 151 (228)
T 1v6z_A 73 VVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQ- 151 (228)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCCC-
T ss_pred EEEEEEecchHHHHHHHHHHHhhCCCEEEEEEEEEEEeeccccchHHHHHHHHHHHHHHcCCCcCcEEecCCCHHHHhh-
Confidence 345557778899999999999999999987754 232111 0111111 12234555442 335555554
Q ss_pred HHHcCceEEEeecCCCceeecccCC-CCCEEEEEcCCCCCCCHHHHhcCCc--EEEECCCCCCCcccHHHHHHHHHHH
Q 018308 229 LRSRGYRIATTHVGMDAISVYDMDW-SCPTAIVVGNENRGVSDEALSLSDL--RCSIPMKGMVDSFNVSVAAGILMHH 303 (358)
Q Consensus 229 Lk~~G~~Ivat~~~~~~~~l~~~~~-~~~~aLV~GnE~~GLs~e~l~~cD~--~v~IPm~G~veSLNVSvAaaIlLye 303 (358)
. +..+++-... ..++.++.. .+++++++|.|| |+|++.++.... ...+.+... -|=.-.|+-.+|.-
T Consensus 152 --~-~~~l~~~~~~--~~~l~~~~~~~~~~~l~IGPEG-Gfs~~Ei~~~~~~G~~~vsLG~r--ILRtETA~i~ala~ 221 (228)
T 1v6z_A 152 --V-AQGLVAHVGA--TARVREVLDPEKPLALAVGPEG-GFAEEEVALLEARGFTPVSLGRR--ILRAETAALALLAL 221 (228)
T ss_dssp --C-SSEEEECTTC--CCCHHHHCCTTSCEEEEECCTT-CCCHHHHHHHHHHTEEEECCCSS--CCCHHHHHHHHHHH
T ss_pred --C-CCEEEEeCCC--ccchhhhccCCCcEEEEEcCCC-CCCHHHHHHHHHCCCEEecCCCC--eeEeHHHHHHHHHH
Confidence 2 5555543322 233433322 368999999998 999999876543 234444333 35555555444443
No 30
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=41.97 E-value=56 Score=29.93 Aligned_cols=118 Identities=10% Similarity=0.113 Sum_probs=64.0
Q ss_pred EEEecCCCCCcHHHHHHHHHHhCCCEEEEecC-CCccccc---------hhhhhcC-----CCceeEeEEE-eCChHHHH
Q 018308 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSC-DSSKRYR---------ENRHVSM-----GAEKWLDIEL-WDAPRECF 226 (358)
Q Consensus 163 vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~-~~~~~~~---------~~~r~S~-----Ga~~~v~v~~-~~nl~~~l 226 (358)
.+.-.+-.+..+=-|++-|--+||+.|+.+.. .+..... .-.+.+. ..--++|-+. ..++.+++
T Consensus 83 ~L~~al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~~~~~~~~l 162 (257)
T 1vhy_A 83 HLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWC 162 (257)
T ss_dssp EEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHHH
T ss_pred EEEEecCchHHHHHHHHHHHhhCcCEEEEEEeEEEEEeccchhhhhHHHHHHHHHHHHHHHcCCCcCcEEeccCCHHHHH
Confidence 34446677889999999999999999987754 2221110 0112221 2223566443 34666665
Q ss_pred HHHHHcCceEEEeecCCCceeecccC--CCCCEEEEEcCCCCCCCHHHHhcCCc--EEEECC
Q 018308 227 NVLRSRGYRIATTHVGMDAISVYDMD--WSCPTAIVVGNENRGVSDEALSLSDL--RCSIPM 284 (358)
Q Consensus 227 ~~Lk~~G~~Ivat~~~~~~~~l~~~~--~~~~~aLV~GnE~~GLs~e~l~~cD~--~v~IPm 284 (358)
+.. ..+..++. +... ..++.++. -.++++|++|.|| |+|++.++.+.. ...+.+
T Consensus 163 ~~~-~~~~~l~~-~~~~-~~~l~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~~G~~~vsL 220 (257)
T 1vhy_A 163 AEN-DGALKLNL-HPRA-HYSIKTLPTIPAGGVRLLIGSEG-GLSAQEIAQTEQQGFTEILL 220 (257)
T ss_dssp TCC-SSCEEEEE-CTTC-CCBGGGCCCCCTTCEEEEECCTT-CCCHHHHHHHHHTTCEEEBC
T ss_pred hcC-CCCcEEEE-cCCC-ccchhhhhccCCCeEEEEEcCCC-CCCHHHHHHHHHCCCEEecC
Confidence 422 12334443 3322 23344432 2357999999998 999999876532 244544
No 31
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=39.87 E-value=19 Score=21.82 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHH
Q 018308 293 VSVAAGILMHHAV 305 (358)
Q Consensus 293 VSvAaaIlLye~~ 305 (358)
+++|+|+++|-|+
T Consensus 13 iav~aaVllylW~ 25 (26)
T 3j1r_A 13 IAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6899999999885
No 32
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=33.15 E-value=32 Score=31.06 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=71.6
Q ss_pred EEEecC-CCCCcHHHHHHHHHHhCCCEEEEecC-CCcccc-------chhhhhcC-----CCceeEeEEE-eCChHHHHH
Q 018308 163 LVVEGL-SDFGNVSATFRSADALGVQSVHVVSC-DSSKRY-------RENRHVSM-----GAEKWLDIEL-WDAPRECFN 227 (358)
Q Consensus 163 vVLd~i-~dP~NlGaIlRTA~afGv~~Vii~~~-~~~~~~-------~~~~r~S~-----Ga~~~v~v~~-~~nl~~~l~ 227 (358)
.++-.+ -.+..+=-+++-|--+||+.|+.+.. .+...+ ..-.+.+. ..--++|-+. ..++.++++
T Consensus 74 ~L~~al~~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~~k~~Rw~~i~~eAaeQs~r~~iP~v~~~~~~~~~l~ 153 (229)
T 2egv_A 74 TLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRLSDLIP 153 (229)
T ss_dssp EEEEECCSSTHHHHHHHHHHHHHTCCEEEEEECTTSCCCHHHHHHHHHHHHHHHHHHHHHHTCCSCCEECCCEEGGGCCC
T ss_pred EEEEecccCHHHHHHHHHHHHHhCcCEEEEEEeEEeeecccchhhHHHHHHHHHHHHHHHcCCCcCcEEcccCCHHHHHh
Confidence 344466 77889999999999999999987754 232211 01111111 1223455332 234444443
Q ss_pred HHHHcCceEEEeecCCCceeecccCCCC-CEEEEEcCCCCCCCHHHHhcCCc--EEEECCCCCCCcccHHHHHHHHHHH
Q 018308 228 VLRSRGYRIATTHVGMDAISVYDMDWSC-PTAIVVGNENRGVSDEALSLSDL--RCSIPMKGMVDSFNVSVAAGILMHH 303 (358)
Q Consensus 228 ~Lk~~G~~Ivat~~~~~~~~l~~~~~~~-~~aLV~GnE~~GLs~e~l~~cD~--~v~IPm~G~veSLNVSvAaaIlLye 303 (358)
.. .+..+++ +... ..++.++.-.+ ++++++|.|| |+|++.++.... ...+.+... =|=.-.|+-.+|.-
T Consensus 154 ~~--~~~~li~-~~~~-~~~l~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~~G~~~vsLG~r--ILRtETA~i~ala~ 225 (229)
T 2egv_A 154 ES--EENIILD-NFYE-GVKPKDVNLEAKTYSVVVGPEG-GFSKRESQILREKGFKSVLLEPY--TLRTETAVVSIVSI 225 (229)
T ss_dssp CS--SEEEEEC-TTSC-CBCGGGSCTTCSEEEEEECCTT-CCCHHHHHHHHHTTCEEECCSSS--CCCHHHHHHHHHHH
T ss_pred hC--CCCEEEE-cCCc-cchhhhhccCCCcEEEEEcCCC-CCCHHHHHHHHHCCCEEecCCCC--eeEhHHHHHHHHHH
Confidence 21 1223332 2222 23344432234 7999999998 999998775532 234444332 25555555444443
No 33
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=31.47 E-value=65 Score=26.85 Aligned_cols=49 Identities=8% Similarity=0.102 Sum_probs=32.0
Q ss_pred EEeCChHHHHHHHHHcCceEEEeecCCCc------eeecccCCCCCEEEEEcCCC
Q 018308 217 ELWDAPRECFNVLRSRGYRIATTHVGMDA------ISVYDMDWSCPTAIVVGNEN 265 (358)
Q Consensus 217 ~~~~nl~~~l~~Lk~~G~~Ivat~~~~~~------~~l~~~~~~~~~aLV~GnE~ 265 (358)
...+...++|+.|+++|++++.++..... .-+..+.+..-.-.|++.+.
T Consensus 34 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~ 88 (189)
T 3ib6_A 34 VLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNS 88 (189)
T ss_dssp CBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGEEEEEECCT
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhheEEEEEccc
Confidence 34578899999999999998887764321 12333444444556666654
No 34
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=25.87 E-value=45 Score=31.16 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCEEEEecC
Q 018308 174 VSATFRSADALGVQSVHVVSC 194 (358)
Q Consensus 174 lGaIlRTA~afGv~~Vii~~~ 194 (358)
+|-|+|+|..|+|+.|+|.+.
T Consensus 28 ~gqIARAaaIF~VdEIvVy~d 48 (268)
T 1k3r_A 28 VVLIARAASIFGVKRIVIYHD 48 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHhccccEEEEEeC
Confidence 799999999999999988754
No 35
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=22.69 E-value=54 Score=29.74 Aligned_cols=131 Identities=12% Similarity=0.037 Sum_probs=69.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHHhCCCEEEEecCCCcc------ccchhhhhc--CCCceeEeEEEeCChHHHHHHHHHcC
Q 018308 162 CLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSK------RYRENRHVS--MGAEKWLDIELWDAPRECFNVLRSRG 233 (358)
Q Consensus 162 ~vVLd~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~------~~~~~~r~S--~Ga~~~v~v~~~~nl~~~l~~Lk~~G 233 (358)
+.++-.+-.+..+=-+++-|--+||+.|+.+...+.. .+.+....| ...--++|-+...++.++++.. .+
T Consensus 87 i~L~~al~K~~r~e~ilqkatELGV~~I~p~~s~s~~~~~k~eRw~~i~~eAaeQs~R~~~P~v~~~~~~~~l~~~--~~ 164 (234)
T 1z85_A 87 LSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLDKAKIVVREAAKQCKRYLFPKVSFLEKLEFSGNV--IT 164 (234)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTCSEEEEECCTTCCCCCCHHHHHHHHHHHHHHHTCSBCCEEEECCSCCCCSEE--EE
T ss_pred EEEEEeccchHHHHHHHHHHHHhCCCEEEEEEEEEEechhhHHHHHHHHHHHHHHcCCCccceEEeccHHHHHhhC--CC
Confidence 3344577788888999999999999999887654211 111111111 1122345533355555544321 12
Q ss_pred ceEEEeecCCCceeecccCCCCCEEEEEcCCCCCCCHHHHhcCCcEEEECCCCCCCcccHHHHHHHHHH
Q 018308 234 YRIATTHVGMDAISVYDMDWSCPTAIVVGNENRGVSDEALSLSDLRCSIPMKGMVDSFNVSVAAGILMH 302 (358)
Q Consensus 234 ~~Ivat~~~~~~~~l~~~~~~~~~aLV~GnE~~GLs~e~l~~cD~~v~IPm~G~veSLNVSvAaaIlLy 302 (358)
. ++ +... .. +.++. ++++++++|.|| |+|++.++..-.. ..|..=.-.=|=.-.|+-.+|.
T Consensus 165 ~-lv--~e~~-~~-l~~~~-~~~i~l~IGPEG-Gfs~~Ei~~~~~~-f~~vsLG~rILRtETA~i~ala 225 (234)
T 1z85_A 165 L-DL--DASQ-NL-LDANL-EGSITVVVGPEG-GFSEKERELLRSS-TTIVSLGKKILRFETAAILTVG 225 (234)
T ss_dssp E-CC-----C-CC-SSSCC-CSSEEEEECCTT-CCCHHHHHHHHHH-SEEC------CCHHHHHHHHHH
T ss_pred e-EE--ECCc-ch-hhhcc-CCCEEEEEcCCC-CCCHHHHHHHHhh-CeEccCCCCeeEhHHHHHHHHH
Confidence 2 22 2221 11 33332 358999999998 9999998766544 4444322223444444444443
No 36
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=21.38 E-value=81 Score=27.19 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=15.3
Q ss_pred ChHHHHHHHHHcCceEEEeecC
Q 018308 221 APRECFNVLRSRGYRIATTHVG 242 (358)
Q Consensus 221 nl~~~l~~Lk~~G~~Ivat~~~ 242 (358)
++.++++.+|++|.++++.+..
T Consensus 146 ~~i~~~~~ak~~G~~vIaIT~~ 167 (212)
T 2i2w_A 146 NVIKAIAAAREKGMKVITLTGK 167 (212)
T ss_dssp HHHHHHHHHHHHTCEEEEEEET
T ss_pred HHHHHHHHHHHCCCeEEEEECC
Confidence 4456777777788777777653
No 37
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=20.67 E-value=1.7e+02 Score=28.18 Aligned_cols=75 Identities=11% Similarity=0.128 Sum_probs=48.9
Q ss_pred ecCCCCCcHHHHHHHHHHhCCCEEEEecCCCccccchhhhhcCCCceeEeEEEeCChH---HHHHHHHHcCceEEEeecC
Q 018308 166 EGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPR---ECFNVLRSRGYRIATTHVG 242 (358)
Q Consensus 166 d~i~dP~NlGaIlRTA~afGv~~Vii~~~~~~~~~~~~~r~S~Ga~~~v~v~~~~nl~---~~l~~Lk~~G~~Ivat~~~ 242 (358)
.++.+|.===++.|.|..+|+-.+ ++..+....+.+..++-++..|..++...|-+ +.++..++.||..+.++.+
T Consensus 80 ~~l~~~~ge~~~araa~~~gi~~~--lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD 157 (352)
T 3sgz_A 80 HSIAWPDGEKSTARAAQEANICYV--ISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITID 157 (352)
T ss_dssp GGGTCTTHHHHHHHHHHHHTCEEE--ECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred HHhcCccHHHHHHHHHHHcCCCeE--eCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 344556555689999999999876 34332222334444555577888877666554 5567778899986666543
Done!