Query 018309
Match_columns 358
No_of_seqs 226 out of 3414
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 3.1E-35 6.7E-40 276.1 26.7 303 16-356 55-359 (381)
2 COG2524 Predicted transcriptio 99.8 2.4E-19 5.2E-24 153.7 13.0 122 216-358 172-293 (294)
3 COG3448 CBS-domain-containing 99.7 9.3E-17 2E-21 140.3 14.4 173 75-273 199-372 (382)
4 COG3448 CBS-domain-containing 99.7 2.9E-17 6.2E-22 143.5 10.4 128 217-357 246-373 (382)
5 cd04641 CBS_pair_28 The CBS do 99.7 5.4E-16 1.2E-20 123.4 15.2 119 225-354 2-120 (120)
6 COG2524 Predicted transcriptio 99.7 2.9E-16 6.3E-21 134.9 11.7 122 124-273 170-291 (294)
7 COG3620 Predicted transcriptio 99.7 1.4E-15 2.9E-20 121.3 11.2 119 218-357 67-185 (187)
8 cd04603 CBS_pair_KefB_assoc Th 99.6 3.2E-15 7E-20 117.2 13.0 110 225-354 2-111 (111)
9 cd04619 CBS_pair_6 The CBS dom 99.6 4.8E-15 1E-19 116.8 14.1 111 226-353 3-113 (114)
10 cd04618 CBS_pair_5 The CBS dom 99.6 3.2E-15 6.8E-20 114.8 11.7 95 225-354 2-98 (98)
11 cd04630 CBS_pair_17 The CBS do 99.6 1.3E-14 2.8E-19 114.2 14.4 112 225-354 2-114 (114)
12 cd04617 CBS_pair_4 The CBS dom 99.6 1.6E-14 3.5E-19 114.5 14.2 111 225-353 2-117 (118)
13 PRK10892 D-arabinose 5-phospha 99.6 9.6E-15 2.1E-19 136.7 14.4 120 216-354 202-323 (326)
14 cd04593 CBS_pair_EriC_assoc_ba 99.6 2.4E-14 5.2E-19 112.8 14.5 112 225-354 2-115 (115)
15 cd04608 CBS_pair_PALP_assoc Th 99.6 7.3E-15 1.6E-19 117.8 11.0 113 225-355 3-124 (124)
16 cd04600 CBS_pair_HPP_assoc Thi 99.6 2.7E-14 5.8E-19 114.0 13.9 117 224-354 2-124 (124)
17 PRK11543 gutQ D-arabinose 5-ph 99.6 1.7E-14 3.7E-19 134.8 14.3 120 216-354 197-318 (321)
18 cd04623 CBS_pair_10 The CBS do 99.6 5.2E-14 1.1E-18 110.2 14.9 112 225-354 2-113 (113)
19 cd04605 CBS_pair_MET2_assoc Th 99.6 7.3E-14 1.6E-18 109.0 15.0 107 225-353 3-109 (110)
20 cd04642 CBS_pair_29 The CBS do 99.6 4.2E-14 9.1E-19 113.5 12.5 121 225-353 2-125 (126)
21 TIGR00400 mgtE Mg2+ transporte 99.6 2.1E-14 4.6E-19 139.5 12.8 212 78-354 88-304 (449)
22 cd04627 CBS_pair_14 The CBS do 99.6 5.9E-14 1.3E-18 112.1 13.0 119 225-352 2-121 (123)
23 cd04607 CBS_pair_NTP_transfera 99.6 1.2E-13 2.5E-18 108.5 14.4 109 226-353 4-112 (113)
24 cd04621 CBS_pair_8 The CBS dom 99.6 9.9E-14 2.1E-18 112.9 14.4 115 225-354 2-135 (135)
25 cd04629 CBS_pair_16 The CBS do 99.6 6.1E-14 1.3E-18 110.1 12.7 113 225-354 2-114 (114)
26 cd04639 CBS_pair_26 The CBS do 99.6 8.1E-14 1.8E-18 108.9 13.2 109 225-353 2-110 (111)
27 cd04614 CBS_pair_1 The CBS dom 99.6 5.4E-14 1.2E-18 107.4 11.8 95 225-354 2-96 (96)
28 cd04615 CBS_pair_2 The CBS dom 99.6 1.2E-13 2.6E-18 108.3 14.0 110 226-353 3-112 (113)
29 cd04624 CBS_pair_11 The CBS do 99.6 1.6E-13 3.4E-18 107.4 14.6 110 225-353 2-111 (112)
30 cd04801 CBS_pair_M50_like This 99.6 6.7E-14 1.4E-18 110.1 12.3 111 225-353 2-113 (114)
31 cd04643 CBS_pair_30 The CBS do 99.6 1.2E-13 2.6E-18 108.8 13.7 114 225-354 2-116 (116)
32 cd04803 CBS_pair_15 The CBS do 99.6 1.2E-13 2.7E-18 109.8 13.9 116 225-354 2-122 (122)
33 cd04631 CBS_pair_18 The CBS do 99.5 1.1E-13 2.4E-18 110.6 13.2 116 225-354 2-125 (125)
34 COG2905 Predicted signal-trans 99.5 3.3E-14 7.1E-19 134.9 11.6 122 216-356 149-270 (610)
35 cd04626 CBS_pair_13 The CBS do 99.5 1.7E-13 3.6E-18 107.2 13.9 109 225-353 2-110 (111)
36 cd04596 CBS_pair_DRTGG_assoc T 99.5 9.9E-14 2.1E-18 108.0 12.6 105 225-353 3-107 (108)
37 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 1.8E-13 3.9E-18 106.0 13.7 104 225-353 2-105 (106)
38 cd04632 CBS_pair_19 The CBS do 99.5 1.6E-13 3.5E-18 110.2 13.8 117 225-354 2-128 (128)
39 cd04613 CBS_pair_SpoIVFB_EriC_ 99.5 2.1E-13 4.5E-18 106.9 13.9 111 225-353 2-113 (114)
40 cd04641 CBS_pair_28 The CBS do 99.5 1.7E-13 3.8E-18 108.8 13.5 118 135-270 2-119 (120)
41 cd04635 CBS_pair_22 The CBS do 99.5 1.2E-13 2.7E-18 109.8 12.6 116 225-354 2-122 (122)
42 cd04587 CBS_pair_CAP-ED_DUF294 99.5 1.7E-13 3.7E-18 107.3 13.3 111 225-353 2-112 (113)
43 cd04800 CBS_pair_CAP-ED_DUF294 99.5 2.8E-13 6.1E-18 105.8 14.3 109 225-353 2-110 (111)
44 cd04636 CBS_pair_23 The CBS do 99.5 2E-13 4.4E-18 110.4 13.8 115 225-354 2-132 (132)
45 PRK14869 putative manganese-de 99.5 8.2E-14 1.8E-18 139.2 13.9 284 27-353 68-390 (546)
46 PRK15094 magnesium/cobalt effl 99.5 1.3E-13 2.9E-18 126.2 14.1 120 217-357 68-190 (292)
47 cd04590 CBS_pair_CorC_HlyC_ass 99.5 3.1E-13 6.8E-18 105.6 14.1 108 225-353 2-110 (111)
48 cd04604 CBS_pair_KpsF_GutQ_ass 99.5 2.4E-13 5.1E-18 106.6 13.3 111 225-353 3-113 (114)
49 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 3.6E-13 7.7E-18 104.7 14.2 106 225-353 3-108 (109)
50 cd04586 CBS_pair_BON_assoc Thi 99.5 1.5E-13 3.3E-18 111.6 12.3 115 225-354 3-135 (135)
51 PRK07807 inosine 5-monophospha 99.5 1.5E-13 3.2E-18 133.4 14.2 115 218-356 91-205 (479)
52 cd04588 CBS_pair_CAP-ED_DUF294 99.5 4.5E-13 9.7E-18 104.5 14.4 108 225-353 2-109 (110)
53 cd04618 CBS_pair_5 The CBS dom 99.5 1.5E-13 3.3E-18 105.3 11.4 95 135-270 2-97 (98)
54 cd04589 CBS_pair_CAP-ED_DUF294 99.5 5.3E-13 1.1E-17 104.3 14.4 110 225-354 2-111 (111)
55 cd04620 CBS_pair_7 The CBS dom 99.5 4.1E-13 8.8E-18 105.7 13.8 111 225-354 2-115 (115)
56 cd04595 CBS_pair_DHH_polyA_Pol 99.5 5.9E-13 1.3E-17 103.9 14.5 107 225-353 3-109 (110)
57 cd04640 CBS_pair_27 The CBS do 99.5 2.4E-13 5.1E-18 109.1 12.4 112 225-353 2-125 (126)
58 cd04611 CBS_pair_PAS_GGDEF_DUF 99.5 5.9E-13 1.3E-17 103.8 14.3 109 225-353 2-110 (111)
59 cd04612 CBS_pair_SpoIVFB_EriC_ 99.5 4.9E-13 1.1E-17 104.3 13.8 110 225-354 2-111 (111)
60 PRK01862 putative voltage-gate 99.5 2.2E-13 4.8E-18 136.8 14.5 124 217-357 448-572 (574)
61 cd04585 CBS_pair_ACT_assoc2 Th 99.5 4.9E-13 1.1E-17 106.0 13.5 115 225-354 2-122 (122)
62 cd04625 CBS_pair_12 The CBS do 99.5 7.6E-13 1.6E-17 103.5 14.3 111 225-354 2-112 (112)
63 cd04633 CBS_pair_20 The CBS do 99.5 4E-13 8.6E-18 106.7 12.8 114 225-354 2-121 (121)
64 cd04622 CBS_pair_9 The CBS dom 99.5 6.8E-13 1.5E-17 103.9 13.9 111 225-354 2-113 (113)
65 cd04603 CBS_pair_KefB_assoc Th 99.5 3.6E-13 7.9E-18 105.5 12.2 109 135-270 2-110 (111)
66 cd04627 CBS_pair_14 The CBS do 99.5 6.3E-13 1.4E-17 106.0 13.5 121 135-270 2-122 (123)
67 cd04619 CBS_pair_6 The CBS dom 99.5 5.7E-13 1.2E-17 104.9 12.9 111 136-270 3-113 (114)
68 PRK14869 putative manganese-de 99.5 1.4E-12 3.1E-17 130.3 17.9 195 131-355 73-303 (546)
69 cd04637 CBS_pair_24 The CBS do 99.5 9.4E-13 2E-17 104.7 13.1 115 225-354 2-122 (122)
70 TIGR03520 GldE gliding motilit 99.5 7.2E-13 1.6E-17 127.1 14.7 118 217-357 192-312 (408)
71 COG3620 Predicted transcriptio 99.5 3.2E-13 7E-18 107.9 10.0 117 129-273 68-184 (187)
72 PRK05567 inosine 5'-monophosph 99.5 8.6E-13 1.9E-17 129.4 15.3 173 131-354 92-265 (486)
73 cd04606 CBS_pair_Mg_transporte 99.5 5.7E-13 1.2E-17 103.9 11.3 103 229-355 2-109 (109)
74 cd04609 CBS_pair_PALP_assoc2 T 99.5 1.3E-12 2.7E-17 101.7 13.2 109 225-354 2-110 (110)
75 cd04802 CBS_pair_3 The CBS dom 99.5 2.3E-12 5.1E-17 100.7 14.7 110 225-353 2-111 (112)
76 cd04602 CBS_pair_IMPDH_2 This 99.5 1.5E-12 3.2E-17 102.5 13.5 106 225-353 3-113 (114)
77 cd04617 CBS_pair_4 The CBS dom 99.5 7.9E-13 1.7E-17 104.7 12.0 111 135-270 2-117 (118)
78 KOG1764 5'-AMP-activated prote 99.5 3.4E-12 7.4E-17 120.5 18.1 196 41-273 163-359 (381)
79 cd04601 CBS_pair_IMPDH This cd 99.5 9.5E-13 2.1E-17 102.5 12.0 106 225-353 3-109 (110)
80 cd04630 CBS_pair_17 The CBS do 99.5 2E-12 4.2E-17 101.7 13.5 112 135-270 2-113 (114)
81 cd04600 CBS_pair_HPP_assoc Thi 99.5 1.3E-12 2.8E-17 104.1 12.5 122 134-270 2-123 (124)
82 cd04599 CBS_pair_GGDEF_assoc2 99.5 2E-12 4.2E-17 99.9 13.0 103 225-353 2-104 (105)
83 cd04610 CBS_pair_ParBc_assoc T 99.4 1.8E-12 3.9E-17 100.4 12.7 105 225-354 3-107 (107)
84 cd04584 CBS_pair_ACT_assoc Thi 99.4 2.2E-12 4.9E-17 102.2 13.4 115 225-354 2-121 (121)
85 PRK07807 inosine 5-monophospha 99.4 4.9E-12 1.1E-16 122.8 18.2 158 131-341 94-251 (479)
86 cd02205 CBS_pair The CBS domai 99.4 4.1E-12 9E-17 98.5 13.8 111 225-353 2-112 (113)
87 PRK07107 inosine 5-monophospha 99.4 1.1E-12 2.4E-17 128.0 12.9 107 226-354 107-218 (502)
88 cd04594 CBS_pair_EriC_assoc_ar 99.4 3.2E-12 7E-17 98.8 12.7 100 227-353 4-103 (104)
89 cd04639 CBS_pair_26 The CBS do 99.4 3.1E-12 6.7E-17 99.9 12.4 109 135-270 2-110 (111)
90 TIGR00393 kpsF KpsF/GutQ famil 99.4 1.9E-12 4.1E-17 117.9 12.7 113 216-347 155-268 (268)
91 cd04642 CBS_pair_29 The CBS do 99.4 3.2E-12 7E-17 102.4 12.6 124 135-270 2-125 (126)
92 COG0517 FOG: CBS domain [Gener 99.4 7.4E-12 1.6E-16 98.5 14.4 111 222-352 5-117 (117)
93 TIGR01302 IMP_dehydrog inosine 99.4 2.6E-12 5.7E-17 124.7 14.1 113 220-355 84-200 (450)
94 cd04623 CBS_pair_10 The CBS do 99.4 5.9E-12 1.3E-16 98.4 13.5 111 135-270 2-112 (113)
95 cd04614 CBS_pair_1 The CBS dom 99.4 4.6E-12 9.9E-17 96.7 12.5 94 135-270 2-95 (96)
96 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 5.3E-12 1.1E-16 97.7 13.0 104 135-270 2-105 (106)
97 cd04608 CBS_pair_PALP_assoc Th 99.4 1.2E-12 2.6E-17 104.9 9.5 112 135-271 3-123 (124)
98 cd04634 CBS_pair_21 The CBS do 99.4 6.7E-12 1.5E-16 103.1 14.2 126 225-353 2-142 (143)
99 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 1.9E-11 4.2E-16 118.6 19.4 158 131-342 93-250 (475)
100 PRK05567 inosine 5'-monophosph 99.4 3.1E-12 6.7E-17 125.5 14.1 115 218-355 89-204 (486)
101 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 2.9E-12 6.3E-17 124.2 13.7 113 219-356 91-203 (475)
102 PLN02274 inosine-5'-monophosph 99.4 3.8E-12 8.2E-17 124.5 14.6 111 222-355 106-221 (505)
103 cd04607 CBS_pair_NTP_transfera 99.4 6E-12 1.3E-16 98.7 13.1 109 136-270 4-112 (113)
104 cd04605 CBS_pair_MET2_assoc Th 99.4 6.8E-12 1.5E-16 97.7 13.3 108 134-270 2-109 (110)
105 COG4109 Predicted transcriptio 99.4 1.4E-12 3.1E-17 117.0 10.5 116 217-356 189-306 (432)
106 cd04801 CBS_pair_M50_like This 99.4 3.9E-12 8.3E-17 100.0 11.7 109 135-270 2-113 (114)
107 cd04598 CBS_pair_GGDEF_assoc T 99.4 7.3E-12 1.6E-16 99.0 13.1 113 225-353 2-118 (119)
108 cd04593 CBS_pair_EriC_assoc_ba 99.4 8E-12 1.7E-16 98.3 13.2 111 135-270 2-114 (115)
109 TIGR00400 mgtE Mg2+ transporte 99.4 3.4E-12 7.3E-17 124.2 13.0 117 216-356 131-252 (449)
110 cd04624 CBS_pair_11 The CBS do 99.4 1E-11 2.2E-16 97.0 13.4 110 135-270 2-111 (112)
111 PRK11543 gutQ D-arabinose 5-ph 99.4 3.5E-12 7.6E-17 119.2 12.2 116 129-270 200-317 (321)
112 cd04596 CBS_pair_DRTGG_assoc T 99.4 8.3E-12 1.8E-16 97.1 12.4 105 135-270 3-107 (108)
113 cd04591 CBS_pair_EriC_assoc_eu 99.4 8.1E-12 1.8E-16 96.9 12.2 100 225-354 3-105 (105)
114 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 1.1E-11 2.3E-16 97.2 12.9 111 135-270 3-113 (114)
115 cd04631 CBS_pair_18 The CBS do 99.4 9.4E-12 2E-16 99.3 12.6 123 135-270 2-124 (125)
116 cd04643 CBS_pair_30 The CBS do 99.4 8.6E-12 1.9E-16 98.1 12.0 114 135-270 2-115 (116)
117 cd04803 CBS_pair_15 The CBS do 99.4 9.8E-12 2.1E-16 98.8 12.5 120 135-270 2-121 (122)
118 COG2239 MgtE Mg/Co/Ni transpor 99.4 6.2E-12 1.3E-16 120.2 13.2 162 78-275 89-255 (451)
119 cd04615 CBS_pair_2 The CBS dom 99.4 1.3E-11 2.8E-16 96.7 12.9 111 135-270 2-112 (113)
120 cd04620 CBS_pair_7 The CBS dom 99.4 1.3E-11 2.8E-16 97.0 12.7 110 135-270 2-114 (115)
121 cd04638 CBS_pair_25 The CBS do 99.4 1.9E-11 4.2E-16 94.6 13.2 104 225-353 2-105 (106)
122 cd04585 CBS_pair_ACT_assoc2 Th 99.4 1.5E-11 3.3E-16 97.3 12.9 120 135-270 2-121 (122)
123 cd04621 CBS_pair_8 The CBS dom 99.4 1.4E-11 3E-16 100.2 12.8 129 135-270 2-134 (135)
124 PRK10892 D-arabinose 5-phospha 99.4 5.8E-12 1.2E-16 118.0 12.0 116 129-270 205-322 (326)
125 cd04800 CBS_pair_CAP-ED_DUF294 99.4 1.5E-11 3.3E-16 95.9 12.6 109 135-270 2-110 (111)
126 cd04636 CBS_pair_23 The CBS do 99.4 1.2E-11 2.6E-16 99.9 12.3 125 135-270 2-131 (132)
127 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 1.7E-11 3.7E-16 95.1 12.7 106 135-270 3-108 (109)
128 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 2.2E-11 4.8E-16 94.8 13.3 109 135-270 2-110 (111)
129 cd04629 CBS_pair_16 The CBS do 99.4 1.2E-11 2.6E-16 96.9 11.8 112 135-270 2-113 (114)
130 TIGR01137 cysta_beta cystathio 99.4 1.4E-11 3E-16 120.7 14.7 118 217-355 336-453 (454)
131 cd04588 CBS_pair_CAP-ED_DUF294 99.4 2.5E-11 5.4E-16 94.5 13.4 108 135-270 2-109 (110)
132 cd04626 CBS_pair_13 The CBS do 99.4 1.6E-11 3.4E-16 95.9 12.2 109 135-270 2-110 (111)
133 PTZ00314 inosine-5'-monophosph 99.3 1E-11 2.3E-16 121.4 13.4 112 221-355 101-217 (495)
134 cd04587 CBS_pair_CAP-ED_DUF294 99.3 2.4E-11 5.2E-16 95.0 12.9 111 135-270 2-112 (113)
135 cd04590 CBS_pair_CorC_HlyC_ass 99.3 2.2E-11 4.9E-16 95.0 12.7 109 135-270 2-110 (111)
136 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 2.2E-11 4.8E-16 95.3 12.3 111 135-270 2-113 (114)
137 cd04586 CBS_pair_BON_assoc Thi 99.3 1.4E-11 3.1E-16 99.9 11.2 128 134-270 2-134 (135)
138 cd04625 CBS_pair_12 The CBS do 99.3 4.4E-11 9.6E-16 93.4 13.3 110 135-270 2-111 (112)
139 cd04602 CBS_pair_IMPDH_2 This 99.3 3.1E-11 6.8E-16 94.8 12.5 109 135-270 3-113 (114)
140 COG0517 FOG: CBS domain [Gener 99.3 4.7E-11 1E-15 93.9 13.5 111 132-269 5-117 (117)
141 cd04635 CBS_pair_22 The CBS do 99.3 2.6E-11 5.6E-16 96.3 11.9 120 135-270 2-121 (122)
142 cd04595 CBS_pair_DHH_polyA_Pol 99.3 5.5E-11 1.2E-15 92.6 13.1 107 135-270 3-109 (110)
143 cd04640 CBS_pair_27 The CBS do 99.3 3.2E-11 7E-16 96.6 11.8 116 135-270 2-125 (126)
144 cd04599 CBS_pair_GGDEF_assoc2 99.3 5.3E-11 1.2E-15 91.8 12.5 102 135-269 2-103 (105)
145 cd04802 CBS_pair_3 The CBS dom 99.3 8.2E-11 1.8E-15 91.9 13.5 110 135-270 2-111 (112)
146 cd04632 CBS_pair_19 The CBS do 99.3 5.7E-11 1.2E-15 95.3 12.8 124 135-270 2-127 (128)
147 cd04637 CBS_pair_24 The CBS do 99.3 6.7E-11 1.5E-15 93.9 13.0 120 135-270 2-121 (122)
148 cd04622 CBS_pair_9 The CBS dom 99.3 7.5E-11 1.6E-15 92.2 12.8 110 135-270 2-112 (113)
149 cd04633 CBS_pair_20 The CBS do 99.3 5.7E-11 1.2E-15 94.2 12.0 119 135-270 2-120 (121)
150 cd04601 CBS_pair_IMPDH This cd 99.3 4.8E-11 1.1E-15 92.7 11.4 106 135-270 3-109 (110)
151 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 9.5E-11 2.1E-15 91.2 13.1 109 135-270 2-110 (111)
152 PLN02274 inosine-5'-monophosph 99.3 5.8E-11 1.3E-15 116.2 14.3 115 132-273 106-222 (505)
153 COG2905 Predicted signal-trans 99.3 2.4E-11 5.3E-16 115.6 11.1 120 129-274 152-271 (610)
154 cd04606 CBS_pair_Mg_transporte 99.3 4.9E-11 1.1E-15 92.8 11.2 102 139-271 2-108 (109)
155 PRK15094 magnesium/cobalt effl 99.3 9.9E-11 2.2E-15 107.3 14.5 120 128-274 69-190 (292)
156 cd04589 CBS_pair_CAP-ED_DUF294 99.3 1.2E-10 2.7E-15 90.8 13.2 109 135-270 2-110 (111)
157 cd02205 CBS_pair The CBS domai 99.3 1.5E-10 3.2E-15 89.6 13.4 111 135-270 2-112 (113)
158 cd04592 CBS_pair_EriC_assoc_eu 99.3 7.2E-11 1.6E-15 95.7 12.0 109 225-337 2-117 (133)
159 PRK07107 inosine 5-monophospha 99.3 5.3E-11 1.1E-15 116.3 13.2 109 137-271 108-218 (502)
160 cd04609 CBS_pair_PALP_assoc2 T 99.3 9.5E-11 2.1E-15 91.0 12.1 108 135-270 2-109 (110)
161 cd04610 CBS_pair_ParBc_assoc T 99.3 1.4E-10 2.9E-15 89.8 12.8 105 134-270 2-106 (107)
162 PRK01862 putative voltage-gate 99.2 6E-11 1.3E-15 119.3 12.5 119 130-273 451-571 (574)
163 cd04594 CBS_pair_EriC_assoc_ar 99.2 1.8E-10 3.8E-15 89.0 12.2 100 137-270 4-103 (104)
164 PRK11573 hypothetical protein; 99.2 1.9E-10 4.1E-15 110.5 14.5 122 217-357 188-312 (413)
165 cd04584 CBS_pair_ACT_assoc Thi 99.2 2E-10 4.3E-15 91.0 12.3 119 135-270 2-120 (121)
166 TIGR01302 IMP_dehydrog inosine 99.2 1.3E-10 2.7E-15 113.1 13.2 165 63-272 32-200 (450)
167 PTZ00314 inosine-5'-monophosph 99.2 1.3E-10 2.8E-15 113.8 13.1 115 131-272 101-217 (495)
168 TIGR03520 GldE gliding motilit 99.2 2.3E-10 4.9E-15 109.9 14.2 155 129-326 194-350 (408)
169 cd04634 CBS_pair_21 The CBS do 99.2 3.7E-10 8.1E-15 92.6 12.7 126 135-270 2-142 (143)
170 TIGR00393 kpsF KpsF/GutQ famil 99.2 1.4E-10 3E-15 105.6 10.9 110 129-264 158-268 (268)
171 cd04591 CBS_pair_EriC_assoc_eu 99.1 1.3E-09 2.8E-14 84.5 12.5 101 136-270 4-104 (105)
172 COG1253 TlyC Hemolysins and re 99.1 1.1E-09 2.4E-14 106.0 13.4 120 217-357 207-329 (429)
173 cd04598 CBS_pair_GGDEF_assoc T 99.1 1.1E-09 2.5E-14 86.3 11.3 113 135-270 2-118 (119)
174 cd04638 CBS_pair_25 The CBS do 99.1 2.3E-09 4.9E-14 82.9 12.5 104 135-270 2-105 (106)
175 cd04592 CBS_pair_EriC_assoc_eu 99.1 1.6E-09 3.5E-14 87.8 11.1 113 135-256 2-118 (133)
176 COG4109 Predicted transcriptio 99.1 9.8E-10 2.1E-14 99.0 10.4 109 134-273 198-306 (432)
177 TIGR01137 cysta_beta cystathio 99.1 1.4E-09 2.9E-14 106.6 12.4 116 129-272 338-453 (454)
178 PF00571 CBS: CBS domain CBS d 99.0 6.6E-10 1.4E-14 75.9 6.5 54 219-272 2-55 (57)
179 COG2239 MgtE Mg/Co/Ni transpor 99.0 1.7E-09 3.7E-14 103.6 11.0 116 216-355 132-252 (451)
180 PF00571 CBS: CBS domain CBS d 99.0 1.6E-09 3.5E-14 73.9 7.0 54 303-357 4-57 (57)
181 TIGR01186 proV glycine betaine 98.9 2.1E-07 4.5E-12 87.9 18.1 111 223-357 249-359 (363)
182 COG4536 CorB Putative Mg2+ and 98.8 3.8E-08 8.3E-13 89.8 10.7 121 217-357 201-325 (423)
183 PRK11573 hypothetical protein; 98.8 2.2E-07 4.7E-12 89.4 15.9 137 16-191 177-313 (413)
184 COG4535 CorC Putative Mg2+ and 98.8 2.6E-08 5.6E-13 85.2 8.2 112 225-357 78-190 (293)
185 PRK10070 glycine betaine trans 98.7 2E-07 4.4E-12 89.1 13.5 105 229-357 290-394 (400)
186 COG1253 TlyC Hemolysins and re 98.7 5.2E-07 1.1E-11 87.5 15.6 115 133-274 215-329 (429)
187 KOG2550 IMP dehydrogenase/GMP 98.7 4.8E-08 1.1E-12 89.8 7.3 107 225-354 117-226 (503)
188 KOG0474 Cl- channel CLC-7 and 98.6 1E-07 2.2E-12 92.1 6.7 136 217-354 583-745 (762)
189 TIGR01186 proV glycine betaine 98.6 1.5E-06 3.1E-11 82.3 14.0 109 135-274 251-359 (363)
190 KOG2550 IMP dehydrogenase/GMP 98.5 1.7E-06 3.7E-11 79.8 11.2 168 59-271 56-226 (503)
191 COG4536 CorB Putative Mg2+ and 98.4 4.9E-06 1.1E-10 76.3 13.0 143 11-192 185-327 (423)
192 PRK10070 glycine betaine trans 98.4 5.6E-06 1.2E-10 79.3 13.0 106 139-275 290-395 (400)
193 cd04597 CBS_pair_DRTGG_assoc2 98.2 3.5E-06 7.6E-11 66.0 6.2 54 217-270 59-112 (113)
194 COG4535 CorC Putative Mg2+ and 98.2 7.3E-06 1.6E-10 70.5 7.6 117 131-274 74-190 (293)
195 KOG0474 Cl- channel CLC-7 and 98.2 6.9E-06 1.5E-10 79.7 8.2 143 128-271 584-745 (762)
196 smart00116 CBS Domain in cysta 98.0 1.8E-05 3.9E-10 50.8 5.8 47 308-355 2-48 (49)
197 cd04597 CBS_pair_DRTGG_assoc2 97.9 2.5E-05 5.5E-10 61.1 6.4 50 303-353 63-112 (113)
198 smart00116 CBS Domain in cysta 97.9 3.9E-05 8.4E-10 49.1 6.2 47 226-272 2-48 (49)
199 KOG0475 Cl- channel CLC-3 and 97.6 0.00062 1.3E-08 66.6 11.2 128 226-355 558-694 (696)
200 KOG0475 Cl- channel CLC-3 and 97.4 0.0029 6.3E-08 62.0 12.5 133 135-272 557-694 (696)
201 COG4175 ProV ABC-type proline/ 96.9 0.0054 1.2E-07 55.9 8.9 145 158-357 233-384 (386)
202 TIGR03415 ABC_choXWV_ATP choli 96.9 0.0042 9.1E-08 59.2 8.2 107 217-357 275-381 (382)
203 KOG0476 Cl- channel CLC-2 and 95.9 0.028 6E-07 56.6 7.9 61 129-193 591-651 (931)
204 COG1125 OpuBA ABC-type proline 95.3 0.21 4.5E-06 44.5 10.1 39 232-270 269-307 (309)
205 COG4175 ProV ABC-type proline/ 94.0 0.11 2.4E-06 47.5 5.6 89 145-273 295-383 (386)
206 TIGR03415 ABC_choXWV_ATP choli 93.1 0.22 4.8E-06 47.6 6.3 50 222-273 331-380 (382)
207 COG1125 OpuBA ABC-type proline 92.3 1.7 3.7E-05 38.9 10.1 113 224-354 187-308 (309)
208 KOG0476 Cl- channel CLC-2 and 85.8 1.1 2.4E-05 45.6 4.6 62 213-274 585-648 (931)
209 PRK11388 DNA-binding transcrip 75.8 9.5 0.00021 39.3 7.6 98 235-349 61-164 (638)
210 KOG2118 Predicted membrane pro 72.5 6.1 0.00013 39.2 4.9 114 218-351 206-324 (498)
211 PRK11388 DNA-binding transcrip 65.6 32 0.0007 35.4 8.8 101 146-264 62-162 (638)
212 PF05198 IF3_N: Translation in 56.5 26 0.00055 25.1 4.4 29 247-275 12-40 (76)
213 PF05198 IF3_N: Translation in 37.3 71 0.0015 22.8 4.2 25 329-354 12-36 (76)
214 PF14827 Cache_3: Sensory doma 35.8 39 0.00084 26.1 2.9 17 248-264 92-108 (116)
215 KOG2118 Predicted membrane pro 29.4 1.2E+02 0.0025 30.3 5.6 109 135-268 215-324 (498)
216 COG1559 Aminodeoxychorismate l 26.6 5.5E+02 0.012 24.2 11.5 145 135-329 46-192 (342)
217 COG0290 InfC Translation initi 24.2 1.3E+02 0.0027 25.3 4.0 31 245-275 16-46 (176)
218 PF02743 Cache_1: Cache domain 23.5 89 0.0019 22.0 2.8 16 249-264 18-33 (81)
219 PF13365 Trypsin_2: Trypsin-li 22.9 60 0.0013 24.4 1.9 19 244-262 102-120 (120)
220 PRK00028 infC translation init 22.7 89 0.0019 26.4 3.0 26 248-273 20-45 (177)
221 TIGR00168 infC translation ini 22.1 84 0.0018 26.2 2.7 25 249-273 9-33 (165)
222 COG3284 AcoR Transcriptional a 21.8 2.3E+02 0.005 28.9 6.0 103 235-349 76-179 (606)
223 cd02958 UAS UAS family; UAS is 21.7 49 0.0011 25.2 1.2 30 244-273 74-108 (114)
224 PRK03972 ribosomal biogenesis 21.1 1.7E+02 0.0037 25.5 4.4 38 309-346 30-67 (208)
225 CHL00199 infC translation init 20.7 1.1E+02 0.0023 26.1 3.0 28 247-274 24-51 (182)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=3.1e-35 Score=276.11 Aligned_cols=303 Identities=27% Similarity=0.485 Sum_probs=253.8
Q ss_pred HHHHHHHHhhhCcccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccC
Q 018309 16 LIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN 95 (358)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~ 95 (358)
.-..+..||+.+.||+.+| .+++++++|...++.+||+.|..++.+++|+||....++.|++++.|++.++..++..
T Consensus 55 ~~~~~~~~~~~~~~~~~~p---~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~ 131 (381)
T KOG1764|consen 55 AVDTLSKFMKSHTCYDLLP---TSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKS 131 (381)
T ss_pred hhHHHHHHHhccCcccccC---CcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhcc
Confidence 4456677788999999997 5599999999999999999999999999999999999999999999999988777763
Q ss_pred CCCC-CHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcce
Q 018309 96 GSNL-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQE 174 (358)
Q Consensus 96 ~~~~-~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~ 174 (358)
+... ..+.++......+....... +....++++.+.+..++.++...+.+++++++||.| .+.| +
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~ 197 (381)
T KOG1764|consen 132 KSSLDNIEVLEDSQLSKRREVECLL---------KETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---E 197 (381)
T ss_pred CCcHHHHhhhhhhhccccchhhhhh---------ccccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---c
Confidence 2111 11222222222232221111 112345559999999999999999999999999996 3455 8
Q ss_pred EEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEc
Q 018309 175 ILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD 254 (358)
Q Consensus 175 ~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd 254 (358)
+.+++|++.+++|++.+.+..+ +..++..++.++++|+|. .+..+.+++++.+|+++|...+++.+||||
T Consensus 198 v~~ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~ 267 (381)
T KOG1764|consen 198 VLYILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVD 267 (381)
T ss_pred eeeehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEc
Confidence 9999999999999999988876 678899999999999986 689999999999999999999999999999
Q ss_pred CCCcEEEEEeHHHHHHHHhccccccccccccc-HHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEE
Q 018309 255 DNDSLLDIYSRSDITALAKDKAYAQIHLDEMN-IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 333 (358)
Q Consensus 255 ~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~-v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~ 333 (358)
..|+.+|+++..|+..+..++.|..+. .+ +.+++..+. ....++++|++++||.+++.+|..+++||+|
T Consensus 268 ~~g~~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~ 337 (381)
T KOG1764|consen 268 ENGKKVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLW 337 (381)
T ss_pred CCCceecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEE
Confidence 999999999999999999988887764 45 777776544 3345689999999999999999999999999
Q ss_pred EEeCCCCeEEEEEehHHHHHHhh
Q 018309 334 IVEAGSKRVEGIISLSDVFRFLL 356 (358)
Q Consensus 334 Vvd~~~~~liGvis~~Dil~~~~ 356 (358)
||| ++|.++|+||++|++.+++
T Consensus 338 VVd-~~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 338 VVD-EDGVLVGVISLSDILSYLV 359 (381)
T ss_pred EEc-CCCcEEEEeeHHHHHHHHH
Confidence 999 5899999999999999985
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.81 E-value=2.4e-19 Score=153.70 Aligned_cols=122 Identities=17% Similarity=0.374 Sum_probs=112.5
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCC
Q 018309 216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ 295 (358)
Q Consensus 216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~ 295 (358)
.+++++|.++++++.+++++.+|.++|.++++++.||+|++ +++|++|.+|+...+.++.+ +..+++
T Consensus 172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g~~------~~kV~~------ 238 (294)
T COG2524 172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANGNL------DAKVSD------ 238 (294)
T ss_pred chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcCCc------cccHHH------
Confidence 46789999999999999999999999999999999999865 99999999999998887743 467888
Q ss_pred CCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhcC
Q 018309 296 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 358 (358)
Q Consensus 296 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~~ 358 (358)
+|.++++++..|+.+.+|++.|..+++.||.|+| .+|+++|+||++|||+.+++.
T Consensus 239 -------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d-s~gkpvGiITrTDIL~~ia~~ 293 (294)
T COG2524 239 -------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD-SNGKPVGIITRTDILTRIAGL 293 (294)
T ss_pred -------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEc-cCCcEEEEEehHHHHHHhhcc
Confidence 8889999999999999999999999999999999 489999999999999998763
No 3
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.73 E-value=9.3e-17 Score=140.30 Aligned_cols=173 Identities=17% Similarity=0.270 Sum_probs=134.5
Q ss_pred eEEEeeehHHHHHHHHHhccCCCCCCHHHHhhcchHH-HHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHh
Q 018309 75 RFVGVLSALDFILILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL 153 (358)
Q Consensus 75 ~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~ 153 (358)
.-+|+ +..|+...++.+.+. -+++.++++.+..+. .....+...+..|.| +|.+.++++.+++++.+|...|.
T Consensus 199 ~rvgf-s~~Dld~aL~~~~E~-lDIdrddLe~llr~~elqa~~R~~~~Ltcad----IMSrdVvtv~~~ts~dhA~~ll~ 272 (382)
T COG3448 199 QRVGF-SSEDLDAALQRLGET-LDIDRDDLERLLRETELQALRRRMGELTCAD----IMSRDVVTVSTDTSIDHARKLLQ 272 (382)
T ss_pred hccCC-CHHHHHHHHHhcCce-ecCCHHHHHHHHHHHHHHHHHHHhccccHHH----hcCccceecCCcCChHHHHHHHH
Confidence 44564 889999999887653 355667777653332 334444444445555 79999999999999999999999
Q ss_pred hCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCCCCceEecCCC
Q 018309 154 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA 233 (358)
Q Consensus 154 ~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~ 233 (358)
+|+++.+||+|+ .. +++|+++++|+.+.... ...+.++.+ ..++++.+|+.++.++.+++
T Consensus 273 ~H~ikaLPV~d~---~~---rl~GiVt~~dl~~~a~~----------~p~qrlr~~----~~~~vk~imt~~v~tv~pdt 332 (382)
T COG3448 273 EHRIKALPVLDE---HR---RLVGIVTQRDLLKHARP----------SPFQRLRFL----RPPTVKGIMTTPVVTVRPDT 332 (382)
T ss_pred HcCccccccccc---cc---ceeeeeeHHHHhhccCc----------chHHHhhcc----CCCcccccccCcceeecCCC
Confidence 999999999975 33 79999999999882110 112222221 23578888999999999999
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309 234 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 273 (358)
Q Consensus 234 ~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~ 273 (358)
+..+.+-.+.+.+.+++||+|++|+++|++|++|++..+.
T Consensus 333 pa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 333 PAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred cHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence 9999999999999999999999999999999999998554
No 4
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.72 E-value=2.9e-17 Score=143.46 Aligned_cols=128 Identities=19% Similarity=0.375 Sum_probs=109.5
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 296 (358)
Q Consensus 217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 296 (358)
.++++|.++++++++++++.+|.+.|.+|+++.+||+|++.+++|+++++|+.+-.+-..+++++. + +
T Consensus 246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~--------~---~- 313 (382)
T COG3448 246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRF--------L---R- 313 (382)
T ss_pred cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhc--------c---C-
Confidence 567899999999999999999999999999999999999999999999999998544333333321 1 1
Q ss_pred CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309 297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357 (358)
Q Consensus 297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~ 357 (358)
++...++|++++.|+.++++..+.+-++.+.+.|.+||+| +.|+++|+||.+|++.++..
T Consensus 314 ~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld-~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 314 PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD-AAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc-CCCcEEEEeeHHHHHHHHHH
Confidence 1111139999999999999999999999999999999999 58999999999999998764
No 5
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.70 E-value=5.4e-16 Score=123.37 Aligned_cols=119 Identities=39% Similarity=0.659 Sum_probs=96.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|++.....+..... ..++.+++..+. .|
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~---~~~~~~~~~~~~-------~~ 71 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNL---DLTVGEALERRS-------QD 71 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccc---cCCHHHHHhhcc-------cC
Confidence 57789999999999999999999999999999999999999999986543322111 123444222111 45
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
..++.++++++++.++++.|.+++.+++||+| ++|+++|+||+.|++++
T Consensus 72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~~~Givt~~di~~~ 120 (120)
T cd04641 72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVD-ENKRVEGIISLSDILQF 120 (120)
T ss_pred CCCCeEEcCCCcHHHHHHHHHhcCccEEEEEC-CCCCEEEEEEHHHhhcC
Confidence 56789999999999999999999999999999 47899999999999864
No 6
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.68 E-value=2.9e-16 Score=134.88 Aligned_cols=122 Identities=19% Similarity=0.318 Sum_probs=107.2
Q ss_pred ccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccc
Q 018309 124 QMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 203 (358)
Q Consensus 124 ~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~ 203 (358)
+...++.+|.++++++.+++|+.+|..+|.+++++..||+|+ + +++|++|.+|+...+...
T Consensus 170 Pk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g------------ 230 (294)
T COG2524 170 PKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANG------------ 230 (294)
T ss_pred CcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcC------------
Confidence 344556789999999999999999999999999999999975 3 799999999999966532
Q ss_pred ccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309 204 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 273 (358)
Q Consensus 204 ~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~ 273 (358)
....+|+++|.++++++.+++.+.||+++|..+++.++.|+|.+|+++|++|++|++..+.
T Consensus 231 ---------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 231 ---------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred ---------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 1123566779999999999999999999999999999999999999999999999998653
No 7
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.65 E-value=1.4e-15 Score=121.35 Aligned_cols=119 Identities=18% Similarity=0.389 Sum_probs=100.7
Q ss_pred ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 018309 218 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 297 (358)
Q Consensus 218 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~ 297 (358)
+..+|..+++.+.+++++.++.++|.++|++.+||+++ |+++|-||..++.+...++-. ...+.++.+
T Consensus 67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e---~i~~~~vr~-------- 134 (187)
T COG3620 67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGME---SIRSLRVRE-------- 134 (187)
T ss_pred HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcccc---chhhhhHHH--------
Confidence 44569999999999999999999999999999999986 999999999999997654431 122566777
Q ss_pred CCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309 298 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357 (358)
Q Consensus 298 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~ 357 (358)
+|..+++++++++++..+-+.+..++. +.|++ +|+++|+||..||++.+.+
T Consensus 135 -----vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e--~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 135 -----VMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE--NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred -----HhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe--CCceEEEEeHHHHHHHHhc
Confidence 888999999999999988887777654 66776 5999999999999998765
No 8
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.65 E-value=3.2e-15 Score=117.24 Aligned_cols=110 Identities=12% Similarity=0.265 Sum_probs=93.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+..... ..+ .+.++.+ +|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~-~~~-----~~~~v~~-------------~~ 62 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP-NDY-----ETLKVCE-------------VY 62 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc-ccc-----cccChhh-------------ee
Confidence 3678899999999999999999999999999999999999999987421 111 1234555 56
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
..++.++.+++++.+|+++|.+++.+++||+| ++|+++|+||.+|++++
T Consensus 63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd-~~~~~~Giit~~di~~~ 111 (111)
T cd04603 63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVD-KEGKLVGTIYERELLRF 111 (111)
T ss_pred ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCeEEEEEEhHHhhcC
Confidence 66788999999999999999999999999999 47999999999999863
No 9
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.65 E-value=4.8e-15 Score=116.78 Aligned_cols=111 Identities=16% Similarity=0.287 Sum_probs=94.9
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC
Q 018309 226 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG 305 (358)
Q Consensus 226 ~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~ 305 (358)
+.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+.+....... ...+.++.+ +|.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~---~~~~~~v~~-------------~~~ 66 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG---PGCTAPVEN-------------VMT 66 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC---CcccCCHHH-------------Hhc
Confidence 6788999999999999999999999999999999999999999875532111 111356666 556
Q ss_pred ccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 306 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 306 ~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
.++.++++++++.+|++.|.+++.+++||+| ++|+++|+||+.|+++
T Consensus 67 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 67 RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVD-ENARPLGVLNARDALK 113 (114)
T ss_pred CCCeeECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEhHhhcc
Confidence 6889999999999999999999999999999 4789999999999975
No 10
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.64 E-value=3.2e-15 Score=114.76 Aligned_cols=95 Identities=15% Similarity=0.255 Sum_probs=85.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 303 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 303 (358)
.++++++++++.+|.+.|.+++++++||+|++ |+++|++|..|+.+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence 47889999999999999999999999999974 89999999999976211
Q ss_pred CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHHH
Q 018309 304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRF 354 (358)
Q Consensus 304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~-~~liGvis~~Dil~~ 354 (358)
+.++++++++.+|++.|.+++++++||+| ++ |+++|+||.+|++++
T Consensus 52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~~giit~~d~~~~ 98 (98)
T cd04618 52 ----LVSIHPERSLFDAALLLLKNKIHRLPVID-PSTGTGLYILTSRRILKF 98 (98)
T ss_pred ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEE-CCCCCceEEeehhhhhcC
Confidence 46799999999999999999999999999 46 899999999999863
No 11
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=1.3e-14 Score=114.23 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=94.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 303 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 303 (358)
++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++.+|+++.+..+.... .+.++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~---~~~~v~~-------------~ 65 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDP---DRVNVYE-------------I 65 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCC---CccCHHH-------------H
Confidence 47789999999999999999999999999987 99999999999988543321111 1345666 5
Q ss_pred CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
|.+++.++++++++.++++.|.+++.+++||+| + |+++|+||..|++++
T Consensus 66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 66 MTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-N-NELIGIISLTDIFLA 114 (114)
T ss_pred hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-CEEEEEEEHHHhhcC
Confidence 556889999999999999999999999999999 4 999999999999864
No 12
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.62 E-value=1.6e-14 Score=114.51 Aligned_cols=111 Identities=22% Similarity=0.319 Sum_probs=93.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++++.|.+++.+++||+|++|+++|+++..|+......+. .....++.+ +|
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~-------------~~ 64 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGV-------------IM 64 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHH-------------Hh
Confidence 5678999999999999999999999999998899999999999988654221 111345666 44
Q ss_pred Cc--cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCC---CeEEEEEehHHHHH
Q 018309 305 GQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS---KRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~---~~liGvis~~Dil~ 353 (358)
.+ ++.++++++++.++++.|.+++++++||+|+ + |+++|+||..|+++
T Consensus 65 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 65 TRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK-VDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC-CCccceEEEEEEhhheec
Confidence 32 6889999999999999999999999999994 5 69999999999975
No 13
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.61 E-value=9.6e-15 Score=136.72 Aligned_cols=120 Identities=15% Similarity=0.221 Sum_probs=104.2
Q ss_pred ccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309 216 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 293 (358)
Q Consensus 216 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~ 293 (358)
.+++++|.+ ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+.+....+. .+.+.++.+
T Consensus 202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----~~~~~~v~~---- 273 (326)
T PRK10892 202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----DLRQASIAD---- 273 (326)
T ss_pred CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----CcccCCHHH----
Confidence 367888987 8999999999999999999999988899998999999999999987554321 122356777
Q ss_pred CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
+|.+++.++.+++++.+|++.|.+++++++||+++ |+++|+||+.|++++
T Consensus 274 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 274 ---------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred ---------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 77788999999999999999999999999999983 899999999999975
No 14
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.61 E-value=2.4e-14 Score=112.83 Aligned_cols=112 Identities=20% Similarity=0.343 Sum_probs=94.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.....+..... ..++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~----~~~~~~-------------~~ 64 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGE----PSAVDE-------------VA 64 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccc----cccHHH-------------hc
Confidence 4678899999999999999999999999999999999999999998654322111 233555 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCC--CeEEEEEehHHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFRF 354 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~--~~liGvis~~Dil~~ 354 (358)
..++.++.+++++.++++.|.+++.+++||+|+ + |+++|+||..|++++
T Consensus 65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLLA 115 (115)
T ss_pred cCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhcC
Confidence 668999999999999999999999999999994 5 799999999999874
No 15
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.60 E-value=7.3e-15 Score=117.76 Aligned_cols=113 Identities=14% Similarity=0.232 Sum_probs=95.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|++....++.... +.++.+ +|
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~----~~~v~~-------------im 65 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQP----SDPVSK-------------AL 65 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCC----CCcHHH-------------Hh
Confidence 5788999999999999999999999999999899999999999997554332211 457777 77
Q ss_pred CccceEEcCCCCHHHHHHHHh---------cCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309 305 GQRCQMCLRSDPLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIISLSDVFRFL 355 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~---------~~~~~~l~Vvd~~~~~liGvis~~Dil~~~ 355 (358)
.+++.++.+++++.++.+.+. ..+.+++||+| ++|+++|+||..|+++++
T Consensus 66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE-KQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc-cccceEEEEehhHhhhhC
Confidence 778999999999999999653 34678889999 579999999999999874
No 16
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.60 E-value=2.7e-14 Score=113.99 Aligned_cols=117 Identities=21% Similarity=0.370 Sum_probs=95.9
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc------ccccccHHHHHhcCCCC
Q 018309 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI------HLDEMNIHQALQLGQDA 297 (358)
Q Consensus 224 ~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l------~~~~~~v~~~l~~~~~~ 297 (358)
+++.++.+++++.++.+.|.+.+.+++||+|++|+++|+++..|++........... .....++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-------- 73 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD-------- 73 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH--------
Confidence 357889999999999999999999999999988999999999999875543221000 001223444
Q ss_pred CCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 298 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 298 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
+|.+++.++++++++.++++.|.+++.+++||+| ++|+++|+||..|++++
T Consensus 74 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 74 -----IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVD-EDRRLVGIVTQTDLIAA 124 (124)
T ss_pred -----hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc-CCCCEEEEEEhHHhhcC
Confidence 6667899999999999999999999999999999 47999999999999864
No 17
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.59 E-value=1.7e-14 Score=134.81 Aligned_cols=120 Identities=13% Similarity=0.193 Sum_probs=105.0
Q ss_pred ccccccCCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309 216 PRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 293 (358)
Q Consensus 216 ~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~ 293 (358)
.+|+++|.++ +.++++++++.+|++.|.+++...+||+|++|+++|+++..|+.+.+..+.. . +.++.+
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~--~---~~~v~~---- 267 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGA--L---TTPVNE---- 267 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCC--c---CCcHHH----
Confidence 4688889988 9999999999999999999999999999999999999999999875543211 1 345666
Q ss_pred CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
+|.+++.++.+++++.+|++.|.+++..++||+| ++|+++|+||..|++++
T Consensus 268 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 268 ---------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVD-ENGKLTGAINLQDFYQA 318 (321)
T ss_pred ---------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHhc
Confidence 7777899999999999999999999999999999 47899999999999975
No 18
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=5.2e-14 Score=110.16 Aligned_cols=112 Identities=21% Similarity=0.404 Sum_probs=94.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++++.|.+++++++||+|++|+++|+++..|++..+....... ...++.+ +|
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~---~~~~~~~-------------~~ 65 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASA---LDTPVSE-------------IM 65 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCc---cccCHHH-------------hc
Confidence 4678899999999999999999999999998899999999999998654322110 1245666 56
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||..|++++
T Consensus 66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 113 (113)
T cd04623 66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD-G-GKLVGIVSIGDVVKA 113 (113)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C-CEEEEEEEHHHhhcC
Confidence 66889999999999999999999999999999 4 899999999999864
No 19
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.58 E-value=7.3e-14 Score=108.97 Aligned_cols=107 Identities=20% Similarity=0.425 Sum_probs=93.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|++.....+ ..++.+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~--------~~~~~~-------------~~ 61 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD--------KKSVED-------------IM 61 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC--------ccCHHH-------------hc
Confidence 577899999999999999999999999999899999999999998755432 123455 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..++.++.+++++.++++.|.+++.+++||++ ++|+++|+||+.|+++
T Consensus 62 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~v~~~di~~ 109 (110)
T cd04605 62 TRNVITATPDEPIDVAARKMERHNISALPVVD-AENRVIGIITSEDISK 109 (110)
T ss_pred CCCCeEECCCCcHHHHHHHHHHhCCCEEeEEC-CCCcEEEEEEHHHhhh
Confidence 56789999999999999999999999999999 4799999999999975
No 20
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=4.2e-14 Score=113.46 Aligned_cols=121 Identities=21% Similarity=0.322 Sum_probs=93.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHH---HHHhcCCCCCCCc
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH---QALQLGQDANPSL 301 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~---~~l~~~~~~~~~~ 301 (358)
.+.++++++++.++++.|.+++++++||+|++|+++|+++..|++....++.. .. ..+.. ....... ...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~-~~---~~~~~~~~~~~~~~~---~~~ 74 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDD-LL---LYRTITFKELSEKFT---DSD 74 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcch-hh---cccchhhhhhhhhcc---ccc
Confidence 46789999999999999999999999999999999999999999986532211 00 00000 0000000 000
Q ss_pred ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 302 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 302 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..+..++.++++++++.+|++.|.+++.+++||+| ++|+++|+||..|+++
T Consensus 75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVD-EEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEEC-CCCCEEEEEEHHHHhc
Confidence 14567899999999999999999999999999999 4799999999999986
No 21
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.57 E-value=2.1e-14 Score=139.54 Aligned_cols=212 Identities=15% Similarity=0.166 Sum_probs=149.4
Q ss_pred EeeehHHHHHHHHHhccCCCCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhh---
Q 018309 78 GVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ--- 154 (358)
Q Consensus 78 Gilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~--- 154 (358)
.-++..|+..++..... ....+-+....-.+.......+. |..+.+|++|.++++++++++++.+|++.|.+
T Consensus 88 ~~l~~dd~~~ll~~l~~---~~~~~lL~~l~~~er~~i~~ll~--~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~ 162 (449)
T TIGR00400 88 NEMNLDDVIDLLEEVPA---NVVQQLLASSTEEERKAINLLLS--YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAK 162 (449)
T ss_pred HcCChhHHHHHHHhCCH---HHHHHHHHcCCHHHHHHHHHHhC--CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCC
Confidence 34555555555543321 11111222233333333444444 77888899999999999999999999999975
Q ss_pred --CCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCCCCceEecCC
Q 018309 155 --NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPT 232 (358)
Q Consensus 155 --~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~ 232 (358)
++...++|+|+ ++ +++|+++.+|++.. . .+ ..++++|.++++++.++
T Consensus 163 ~~~~~~~v~Vvd~---~~---~l~GvV~l~dLl~a------~-------~~------------~~v~~im~~~~~~v~~~ 211 (449)
T TIGR00400 163 TKEDIYTLYVTNE---SK---HLKGVLSIRDLILA------K-------PE------------EILSSIMRSSVFSIVGV 211 (449)
T ss_pred CccceeEEEEECC---CC---eEEEEEEHHHHhcC------C-------CC------------CcHHHHhCCCCeeECCC
Confidence 45678888864 34 79999999998650 0 11 13455688889999999
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCccceEEc
Q 018309 233 ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCL 312 (358)
Q Consensus 233 ~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~ 312 (358)
+++.+|++.|.+++...+||+|++|+++|++|.+|++..+.+.. .++++. ...++..
T Consensus 212 ~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~----------~ed~~~-------------~~gv~~~ 268 (449)
T TIGR00400 212 NDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA----------TEDFYM-------------IAAVKPL 268 (449)
T ss_pred CCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh----------HHHHHH-------------hcCCCCC
Confidence 99999999999999999999999999999999999998765431 134222 2233445
Q ss_pred CCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 313 RSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 313 ~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
+++.+.+++.+|.+++..+++|.- +.|++| ..++..
T Consensus 269 ~~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~~ 304 (449)
T TIGR00400 269 DDSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIISN 304 (449)
T ss_pred cchhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHHH
Confidence 678889999999999998887643 555555 555444
No 22
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=5.9e-14 Score=112.06 Aligned_cols=119 Identities=19% Similarity=0.269 Sum_probs=91.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 303 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 303 (358)
++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|+++....+....... +.......... .+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~ 73 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGL-DPLYPIPLRDL-------TI 73 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccch-hhhhhhhhhhc-------cc
Confidence 57789999999999999999999999999987 99999999999988653321100000 00000001000 14
Q ss_pred CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 018309 304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF 352 (358)
Q Consensus 304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil 352 (358)
|..++.++++++++.+|++.|.+++.+++||+| ++|+++|+||+.|+-
T Consensus 74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~vGiit~~di~ 121 (123)
T cd04627 74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVD-NQGNLIGNISVTDVR 121 (123)
T ss_pred CcCCceEeCCCCCHHHHHHHHHHcCCceEEEEC-CCCcEEEEEeHHHhh
Confidence 567889999999999999999999999999999 478999999999974
No 23
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.56 E-value=1.2e-13 Score=108.53 Aligned_cols=109 Identities=18% Similarity=0.285 Sum_probs=93.5
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC
Q 018309 226 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG 305 (358)
Q Consensus 226 ~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~ 305 (358)
+.++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.....++.. . +.++.+ +|.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~--~---~~~v~~-------------~~~ 65 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLS--L---DDPVSE-------------VMN 65 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCC--c---CCCHHH-------------hhc
Confidence 5678999999999999999999999999999999999999999875543211 1 245666 555
Q ss_pred ccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 306 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 306 ~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
.++.++++++++.++++.|.+++.+++||+| ++|+++|+||..|++.
T Consensus 66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~ 112 (113)
T cd04607 66 RNPITAKVGSSREEILALMRERSIRHLPILD-EEGRVVGLATLDDLLS 112 (113)
T ss_pred CCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEhHHhcc
Confidence 6788999999999999999999999999999 4799999999999974
No 24
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=9.9e-14 Score=112.91 Aligned_cols=115 Identities=15% Similarity=0.216 Sum_probs=94.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccc-------------------cccc
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH-------------------LDEM 285 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~-------------------~~~~ 285 (358)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|++............ ..+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 467889999999999999999999999999999999999999999865422111000 0012
Q ss_pred cHHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 286 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 286 ~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
++.+ +|..++.++.+++++.++++.|.+++.+++||++ + |+++|+||..|++++
T Consensus 82 ~v~~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~-~~~~Gvit~~di~~~ 135 (135)
T cd04621 82 VAED-------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD-N-DNIVGVITKTDICRE 135 (135)
T ss_pred cHHH-------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe-C-CEEEEEEEHHHHhhC
Confidence 3444 6667889999999999999999999999999999 4 899999999999863
No 25
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=6.1e-14 Score=110.09 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=94.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++..|+.+.+.+..+.. ....++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~--~~~~~v~~-------------~~ 66 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHC--DGVATVRD-------------IM 66 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhcc--CCCccHHH-------------Hh
Confidence 4678999999999999999999999999999999999999999987554322211 11345666 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|++++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 114 (114)
T cd04629 67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D-GKLVGQISRRDVLRA 114 (114)
T ss_pred ccCceEECCCCcHHHHHHHHHHhCCCccCEEE-C-CEEEEEEEHHHHhcC
Confidence 56788999999999999999999999999999 4 899999999999864
No 26
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=8.1e-14 Score=108.91 Aligned_cols=109 Identities=21% Similarity=0.376 Sum_probs=93.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+......... +.++.+ +|
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~ 62 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP------DAPVRG-------------VM 62 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC------CCcHHH-------------Hh
Confidence 46778999999999999998899999999988999999999999886543211 235565 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..++.++.+++++.++++.|..++.+++||+| ++|+++|++|..|+.+
T Consensus 63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~dl~~ 110 (111)
T cd04639 63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVD-GSGRLVGLVTLENVGE 110 (111)
T ss_pred cCCCcEECCCCcHHHHHHHHHhcCCceeeEEc-CCCCEEEEEEHHHhhc
Confidence 56789999999999999999999999999999 4689999999999975
No 27
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=5.4e-14 Score=107.42 Aligned_cols=95 Identities=16% Similarity=0.368 Sum_probs=86.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
+++++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~-------------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS-------------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence 577899999999999999999999999999899999999999998621
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
.+.++.+++++.++++.|.+++.+++||+| ++|+++|+||.+|++++
T Consensus 50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~~~~Giit~~di~~~ 96 (96)
T cd04614 50 --EVVTATKRTTVSECAQKMKRNRIEQIPIIN-GNDKLIGLLRDHDLLKP 96 (96)
T ss_pred --CcEEecCCCCHHHHHHHHHHhCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence 156889999999999999999999999999 46899999999999864
No 28
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=1.2e-13 Score=108.34 Aligned_cols=110 Identities=20% Similarity=0.352 Sum_probs=93.5
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC
Q 018309 226 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG 305 (358)
Q Consensus 226 ~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~ 305 (358)
+.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|+.....++.. +.+.++.+ +|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~~~ 65 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVRE-------------VMN 65 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHH-------------hcc
Confidence 5678999999999999999999999999988999999999999874432211 11345665 555
Q ss_pred ccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 306 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 306 ~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
.++.++.+++++.++++.|.+++.+++||+| ++|+++|++|..|+++
T Consensus 66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 66 SPVITIDANDSIAKARWLMSNNNISRLPVLD-DKGKVGGIVTEDDILR 112 (113)
T ss_pred CCceEECCCCcHHHHHHHHHHcCCCeeeEEC-CCCeEEEEEEHHHhhc
Confidence 6789999999999999999999999999999 4789999999999975
No 29
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=1.6e-13 Score=107.43 Aligned_cols=110 Identities=18% Similarity=0.367 Sum_probs=94.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++.+.|.+.+.+++||+|++|+++|+++..|++..+.++.. . +.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~--~---~~~v~~-------------~~ 63 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGID--L---DTPVSE-------------IM 63 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCC--C---ccCHHH-------------hc
Confidence 46789999999999999999999999999988999999999999886544321 1 345555 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..++.++.+++++.++++.|.+++...+||+| ++|++.|++|..|+++
T Consensus 64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVD-KGGELVGVISIRDLVR 111 (112)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCccEEEEEc-CCCcEEEEEEHHHhcc
Confidence 66789999999999999999999999999999 4799999999999975
No 30
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=6.7e-14 Score=110.07 Aligned_cols=111 Identities=22% Similarity=0.376 Sum_probs=90.5
Q ss_pred CceEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309 225 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 303 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~-~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 303 (358)
++.++.+++++.+|++.|.+++ .+.+||+|++|+++|+++.+|++...... + .+.++.+++..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~-~-----~~~~v~~~~~~---------- 65 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQ-W-----AQTTVIQVMTP---------- 65 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhh-c-----cccchhhhhcc----------
Confidence 4678999999999999997775 89999999889999999999998865321 1 12455553210
Q ss_pred CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..++.++.+++++.+|++.|.+++.+++||+| ++|+++|++|..||++
T Consensus 66 -~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~-~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 66 -AAKLVTVLSEESLAEVLKLLEEQGLDELAVVE-DSGQVIGLITEADLLR 113 (114)
T ss_pred -cccceEECCCCcHHHHHHHHHHCCCCeeEEEc-CCCcEEEEEeccceec
Confidence 02366899999999999999999999999999 4789999999999875
No 31
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.2e-13 Score=108.77 Aligned_cols=114 Identities=18% Similarity=0.292 Sum_probs=92.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc-ccccccHHHHHhcCCCCCCCccc
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-HLDEMNIHQALQLGQDANPSLGF 303 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l-~~~~~~v~~~l~~~~~~~~~~~~ 303 (358)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+.+...+...... .+...++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~-------------~ 68 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVID-------------V 68 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHH-------------H
Confidence 46789999999999999999999999999988999999999999886543211110 000234555 5
Q ss_pred CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
|..++.++.+++++.+|++.|.+.+ .+||+| ++|+++|++|..|++++
T Consensus 69 ~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 69 MNTDVPVIIDDADIEEILHLLIDQP--FLPVVD-DDGIFIGIITRREILKA 116 (116)
T ss_pred hcCCCceecCCCCHHHHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhcC
Confidence 6667899999999999999998865 599999 57999999999999864
No 32
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.2e-13 Score=109.76 Aligned_cols=116 Identities=19% Similarity=0.323 Sum_probs=95.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc-----ccccccHHHHHhcCCCCCC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-----HLDEMNIHQALQLGQDANP 299 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l-----~~~~~~v~~~l~~~~~~~~ 299 (358)
++.++.+++++.++.+.|.+.+++.+||+|++|+++|+++..|+............ .....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~---------- 71 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE---------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----------
Confidence 46789999999999999999999999999988999999999999886542211100 001334555
Q ss_pred CcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 300 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 300 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
++..++.++.+++++.++++.|.+.+.+++||+| ++|+++|++|..|++++
T Consensus 72 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 72 ---VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVD-DKGTLVGIITRSDFLRL 122 (122)
T ss_pred ---hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEc-CCCCEEEEEEHHHhhcC
Confidence 5566889999999999999999999999999999 46899999999999863
No 33
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.1e-13 Score=110.56 Aligned_cols=116 Identities=16% Similarity=0.271 Sum_probs=94.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccccccc-------ccccccHHHHHhcCCC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQI-------HLDEMNIHQALQLGQD 296 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l-------~~~~~~v~~~l~~~~~ 296 (358)
++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++..|+...+.+...... ...+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 74 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS------- 74 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH-------
Confidence 46788999999999999999999999999987 999999999999986643221100 000223444
Q ss_pred CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
++..++.++++++++.++++.|.+.+.+++||+| ++|+++|+||..||+++
T Consensus 75 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 75 ------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVD-DDGKLVGIVTERDLLKA 125 (125)
T ss_pred ------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEc-CCCcEEEEEEHHHhhcC
Confidence 4556799999999999999999999999999999 46899999999999874
No 34
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.55 E-value=3.3e-14 Score=134.86 Aligned_cols=122 Identities=24% Similarity=0.363 Sum_probs=108.2
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCC
Q 018309 216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ 295 (358)
Q Consensus 216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~ 295 (358)
+++++.+..+++++++.+++.+|.+.|.++|++++.++++++...||+|++|+....-.... ..+.++.+
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~----~~~~~V~e------ 218 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR----SKTQKVSE------ 218 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC----Ccccchhh------
Confidence 46778899999999999999999999999999999999999999999999999985433221 11456776
Q ss_pred CCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309 296 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356 (358)
Q Consensus 296 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~ 356 (358)
+|+.|+++++.++.+.+|+-+|..++++|+||.++ |+++|+||.+||++.+.
T Consensus 219 -------vmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 219 -------VMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFS 270 (610)
T ss_pred -------hhccCceeecCcchHHHHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhC
Confidence 88999999999999999999999999999999994 99999999999999874
No 35
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.7e-13 Score=107.18 Aligned_cols=109 Identities=17% Similarity=0.332 Sum_probs=93.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++++++++.++++.|.+++.+++||+|++|+++|+++..|+......... .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~-------------~~ 63 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFN-------------IV 63 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHH-------------Hh
Confidence 46789999999999999999999999999988999999999999875432211 1245666 45
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
.+++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|+++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~ 110 (111)
T cd04626 64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD 110 (111)
T ss_pred cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence 56789999999999999999999999999999 4 89999999999974
No 36
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=9.9e-14 Score=108.03 Aligned_cols=105 Identities=20% Similarity=0.299 Sum_probs=92.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++.+.|.+++.+.+||+|++|+++|+++..|+..... +.++.+ +|
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~----------~~~v~~-------------~~ 59 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKDP----------DTTIEK-------------VM 59 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcccc----------cccHHH-------------Hh
Confidence 5778999999999999999999999999999999999999999975210 345666 45
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..++.++.+++++.++++.|..++.+.+||+| ++|+++|++|..|+++
T Consensus 60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~di~~ 107 (108)
T cd04596 60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVD-DNKKLLGIISRQDVLK 107 (108)
T ss_pred cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc-CCCCEEEEEEHHHhhc
Confidence 56788999999999999999999999999999 4799999999999986
No 37
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.54 E-value=1.8e-13 Score=106.02 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=90.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++++++++.+|++.|.+.+.+.+||+|++|+++|+++..|+..... .++.+ +|
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~-------------~~ 57 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGD-------------HA 57 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhh-------------hc
Confidence 4678999999999999999999999999998899999999999986421 12344 45
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
.+++.++.+++++.++++.|.+++..++||+| ++|+++|+||..|+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVD-EDGRYVGEVTQRSIAD 105 (106)
T ss_pred ccCCEEECCCCCHHHHHHHHHHCCCCeeeEEC-CCCcEEEEEEHHHhhc
Confidence 55678899999999999999999999999999 4789999999999975
No 38
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.6e-13 Score=110.22 Aligned_cols=117 Identities=22% Similarity=0.371 Sum_probs=93.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc-ccc--------cccccHHHHHhcCC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QIH--------LDEMNIHQALQLGQ 295 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~-~l~--------~~~~~v~~~l~~~~ 295 (358)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|++|..|+...+....+. ... ..+.++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD------ 75 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH------
Confidence 466889999999999999999999999999999999999999998754321110 000 00123333
Q ss_pred CCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeC-CCCeEEEEEehHHHHHH
Q 018309 296 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA-GSKRVEGIISLSDVFRF 354 (358)
Q Consensus 296 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~~~~liGvis~~Dil~~ 354 (358)
+|..+++++.+++++.++++.|.+++.+.+||++. ++|+++|+||..|++++
T Consensus 76 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 76 -------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred -------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 66678999999999999999999999999999851 36899999999999863
No 39
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.54 E-value=2.1e-13 Score=106.89 Aligned_cols=111 Identities=20% Similarity=0.353 Sum_probs=95.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.....+... ....++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~v~~-------------~~ 64 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASD-------------IM 64 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc----cccEEHHH-------------hc
Confidence 46789999999999999999999999999988999999999999876543211 11245666 56
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCC-CCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG-SKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~-~~~liGvis~~Dil~ 353 (358)
.+++.++.+++++.++++.|...+.+++||+| + .|+++|++|..|+++
T Consensus 65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVD-DDPGKLLGILSRSDLLS 113 (114)
T ss_pred cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEe-CCCCEEEEEEEhHHhhc
Confidence 67889999999999999999999999999999 5 689999999999986
No 40
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.7e-13 Score=108.83 Aligned_cols=118 Identities=22% Similarity=0.302 Sum_probs=92.2
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++++++++.+|++.|.+++.+++||+++ +| +++|+++..|+..+........ ...++.+.-
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~~------~~~~~~~~~---- 65 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYNN------LDLTVGEAL---- 65 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCcccc------ccCCHHHHH----
Confidence 6789999999999999999999999999964 45 8999999999998653221110 011111100
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.....|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|++.
T Consensus 66 --~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 66 --ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred --hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 111235557889999999999999999999999999998899999999999875
No 41
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.2e-13 Score=109.78 Aligned_cols=116 Identities=16% Similarity=0.292 Sum_probs=93.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc-cc----ccccccHHHHHhcCCCCCC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QI----HLDEMNIHQALQLGQDANP 299 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~-~l----~~~~~~v~~~l~~~~~~~~ 299 (358)
++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|++......... .. .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 71 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK---------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----------
Confidence 467899999999999999999999999999889999999999998742111000 00 001233444
Q ss_pred CcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 300 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 300 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
+|..++.++.+++++.++++.|..++.+++||+| ++|+++|++|..|++++
T Consensus 72 ---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 72 ---IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVN-EKDQLVGIVDRHDVLKA 122 (122)
T ss_pred ---HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEc-CCCcEEEEEEhHHhhcC
Confidence 5566789999999999999999999999999999 47999999999999864
No 42
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.54 E-value=1.7e-13 Score=107.33 Aligned_cols=111 Identities=17% Similarity=0.306 Sum_probs=92.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..|++....+..... ...++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~v~~-------------i~ 64 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDP---ESTLVER-------------VM 64 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCc---CcCCHHH-------------hc
Confidence 4678999999999999999999999999997 99999999999985333221111 0245666 56
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..++.++.+++++.++++.|..++.+++||++ ++|+++|+||..|++.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVD-KSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCCeEEcCCCCHHHHHHHHHHcCCCcccEEC-CCCCEEEEEEHHHhcc
Confidence 66788999999999999999999999999999 4799999999999975
No 43
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.53 E-value=2.8e-13 Score=105.83 Aligned_cols=109 Identities=20% Similarity=0.333 Sum_probs=92.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++..++++.++.+.|.+++.+.+||+|+ |+++|+++..|+...+...... .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~ 63 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLD----PDTPVSE-------------VM 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCC----ccCCHHH-------------Hh
Confidence 4678999999999999999999999999997 9999999999998754332211 1245666 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..+++++++++++.++++.|.+++.+++||++ + |+++|++|..|+++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Giit~~di~~ 110 (111)
T cd04800 64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD-D-GRLVGVISATDLLR 110 (111)
T ss_pred CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhc
Confidence 56789999999999999999999999999999 4 89999999999985
No 44
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=2e-13 Score=110.38 Aligned_cols=115 Identities=17% Similarity=0.304 Sum_probs=93.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccc-------c---------ccccHH
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH-------L---------DEMNIH 288 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~-------~---------~~~~v~ 288 (358)
++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+............. . ...++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 467899999999999999999999999999999999999999998865432110000 0 001233
Q ss_pred HHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 289 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
+ +|.+++..+.+++++.++++.|.+.+.+++||+| + |+++|++|..|++++
T Consensus 82 ~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 82 E-------------IMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS 132 (132)
T ss_pred H-------------hccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence 3 6667889999999999999999999999999999 5 999999999999864
No 45
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.53 E-value=8.2e-14 Score=139.21 Aligned_cols=284 Identities=12% Similarity=0.148 Sum_probs=174.3
Q ss_pred CcccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccCCCCCCHHHHhh
Q 018309 27 HSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 106 (358)
Q Consensus 27 ~~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~ 106 (358)
.++.|++- ++++++++++|+.+|++.|.++++..+||+|.+ ++++|+++..|+...+..... . +.+..
T Consensus 68 ~~V~dim~-----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~-~-----~~~~~ 135 (546)
T PRK14869 68 PQVRDLEI-----DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILD-P-----EILSK 135 (546)
T ss_pred CcHHHhcC-----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcc-h-----hhhhh
Confidence 35667752 478999999999999999999999999999865 799999999999985543221 0 01111
Q ss_pred cchHHHHHHHHhhccccccCC------C--------------CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecC
Q 018309 107 HTISAWKVGKLQLNLKRQMDG------N--------------GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHST 166 (358)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~d~------~--------------~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~ 166 (358)
. ..++.++...++....... . +......++.+.... +.+..+.+.++++++|++..
T Consensus 136 ~-~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~ 211 (546)
T PRK14869 136 S-PTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLIITGGA 211 (546)
T ss_pred c-CCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEEECCCC
Confidence 0 0001111111110000000 0 001122344443333 33445677889999998542
Q ss_pred CCCC------CcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCC-CCceEecCCCCHHHHH
Q 018309 167 GPAG------SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSAL 239 (358)
Q Consensus 167 ~~~g------~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~ 239 (358)
.-.. ....+.++.|..|.......-. .. ..++++|+ +++.++++++++.++.
T Consensus 212 ~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l~---------~~------------~~V~~iM~~~~~~~~~~~~~~~~~~ 270 (546)
T PRK14869 212 PVSEDVLELAKENGVTVISTPYDTFTTARLIN---------QS------------IPVSYIMTTEDLVTFSKDDYLEDVK 270 (546)
T ss_pred CCCHHHHHHHHhCCCeEEEecccHHHHHHHhh---------cC------------CCHHHhccCCCcEEECCCCcHHHHH
Confidence 2100 0013777888887766433211 11 24566698 8899999999999999
Q ss_pred HHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc-cc-ccccc--cHHH-----HHhcCCCCCCCcccCCccceE
Q 018309 240 ALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QI-HLDEM--NIHQ-----ALQLGQDANPSLGFNGQRCQM 310 (358)
Q Consensus 240 ~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~-~l-~~~~~--~v~~-----~l~~~~~~~~~~~~~~~~~~~ 310 (358)
+.|.+++++.+||+|++|+++|++|.+|++........- +- ...+. -+.+ ...+.. .. +++...++.
T Consensus 271 ~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~--~~--~~~~~~pi~ 346 (546)
T PRK14869 271 EVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIIDHHR--LG--DIQTSNPIF 346 (546)
T ss_pred HHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEecCCc--cC--CCCCCCCcE
Confidence 999999999999999999999999999999854421100 00 00000 0000 000100 00 145445444
Q ss_pred E---cCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 311 C---LRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 311 v---~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
+ +...+...+.+.|.+.++...|++.. ..+.|++|-++.++
T Consensus 347 ~~~~~~gst~tiv~~~~~~~~i~~~~~ia~--~ll~gIlsDT~~f~ 390 (546)
T PRK14869 347 FRNEPVGSTSTIVARMYRENGIEPSPEIAG--LLLAAILSDTLLFK 390 (546)
T ss_pred EEeeeeeeHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhcCcc
Confidence 4 44777888999999999888777773 56888888887765
No 46
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.53 E-value=1.3e-13 Score=126.18 Aligned_cols=120 Identities=13% Similarity=0.361 Sum_probs=101.2
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309 217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 293 (358)
Q Consensus 217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~ 293 (358)
+++++|.+ ++.++..++++.++++.+.+++.+++||++++ ++++|+++.+|++.....+.. ..++.+
T Consensus 68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~------~~~l~~---- 137 (292)
T PRK15094 68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE------AFSMDK---- 137 (292)
T ss_pred EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC------cCCHHH----
Confidence 45666887 68999999999999999999999999999876 799999999999875432111 123455
Q ss_pred CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309 294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357 (358)
Q Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~ 357 (358)
+|. ++.++++++++.++++.|.+++.|.++|+| +.|.++|+||+.||++.++|
T Consensus 138 ---------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD-e~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 138 ---------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG 190 (292)
T ss_pred ---------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-CCCCEEEEeEHHHHHHHHhC
Confidence 443 456899999999999999999999999999 57899999999999999876
No 47
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.53 E-value=3.1e-13 Score=105.55 Aligned_cols=108 Identities=16% Similarity=0.359 Sum_probs=92.0
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 303 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 303 (358)
++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++..|+......+.. ..++.+ +
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~-------------~ 62 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRD-------------L 62 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHH-------------H
Confidence 46789999999999999999999999999988 999999999999986643211 123443 2
Q ss_pred CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
+ .++.++.+++++.++++.|..++.+++||+| ++|+++|+||+.|+++
T Consensus 63 ~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~ 110 (111)
T cd04590 63 L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVD-EYGGTAGLVTLEDILE 110 (111)
T ss_pred h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEE-CCCCEEEEeEHHHhhc
Confidence 3 3578899999999999999999999999999 5799999999999975
No 48
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.53 E-value=2.4e-13 Score=106.65 Aligned_cols=111 Identities=15% Similarity=0.302 Sum_probs=94.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
+++++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++...+.+... ....++.+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~----~~~~~v~~-------------~~ 65 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD----ILTLPVAD-------------VM 65 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc----cccCCHHH-------------hh
Confidence 46678999999999999998889999999988999999999999987653221 11235666 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..++.++++++++.++++.|..++.+++||+| ++|+++|+|+..||++
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~iG~it~~di~~ 113 (114)
T cd04604 66 TRNPKTIDPDALAAEALELMEENKITALPVVD-DNGRPVGVLHIHDLLR 113 (114)
T ss_pred ccCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCCEEEEEEHHHhhc
Confidence 56788999999999999999999999999999 4799999999999986
No 49
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.53 E-value=3.6e-13 Score=104.72 Aligned_cols=106 Identities=19% Similarity=0.306 Sum_probs=92.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++++.|.+++..++||+|++|+++|+++..|+...... ..++.+ +|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~---------~~~v~~-------------~~ 60 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE---------AKSLED-------------IM 60 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc---------CCcHhH-------------hh
Confidence 46788999999999999999999999999988999999999999875421 134555 45
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
...+.++++++++.++++.|.+.+.+++||+| ++|+++|++|..|+++
T Consensus 61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~-~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVD-EDGKLVGLITRSSLVD 108 (109)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCceeeEEC-CCCeEEEEEehHHhhc
Confidence 56788999999999999999999999999999 4799999999999975
No 50
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.52 E-value=1.5e-13 Score=111.59 Aligned_cols=115 Identities=23% Similarity=0.374 Sum_probs=93.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc------ccc------------cccccc
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY------AQI------------HLDEMN 286 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~------~~l------------~~~~~~ 286 (358)
++.++.+++++.++++.|.+++.+++||+|++|+++|+++..|+......... ... .....+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK 82 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence 57789999999999999999999999999988999999999999875432210 000 000122
Q ss_pred HHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 287 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 287 v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
+.+ +|..++.++.+++++.++++.|.+.+.+++||+| +|+++|+||..|++++
T Consensus 83 v~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~ 135 (135)
T cd04586 83 VAD-------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA 135 (135)
T ss_pred HHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence 333 5667889999999999999999999999999999 3899999999999864
No 51
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.52 E-value=1.5e-13 Score=133.35 Aligned_cols=115 Identities=15% Similarity=0.236 Sum_probs=101.5
Q ss_pred ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 018309 218 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 297 (358)
Q Consensus 218 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~ 297 (358)
+.+.|.+++.++.+++++.++++.|.+++++++||+|++|+++|++|.+|+.... . ..++.+
T Consensus 91 v~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~------~----~~~V~d-------- 152 (479)
T PRK07807 91 SRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD------R----FTQVRD-------- 152 (479)
T ss_pred cccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc------c----CCCHHH--------
Confidence 4456888999999999999999999999999999999999999999999985420 0 235666
Q ss_pred CCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309 298 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356 (358)
Q Consensus 298 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~ 356 (358)
+|.++++++++++++.+|++.|.+++++++||+| ++|+++|+||..||++...
T Consensus 153 -----iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD-~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 153 -----VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVD-ADGRLVGVLTRTGALRATI 205 (479)
T ss_pred -----hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence 7778999999999999999999999999999999 4799999999999998653
No 52
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.52 E-value=4.5e-13 Score=104.49 Aligned_cols=108 Identities=24% Similarity=0.373 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++++.|.+.+++++||+|+ |+++|+++..|+++...++.. ..++.+ ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~ 61 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE------LAKVKD-------------VM 61 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc------ccCHHH-------------Hh
Confidence 4678999999999999999999999999998 999999999999986543211 135565 44
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..++.++.+++++.++++.|.+.+.+++||++ ++|+++|+||..|+++
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTD-DEGRPVGIITRTDILR 109 (110)
T ss_pred cCCceEECCCCCHHHHHHHHHhcCCCEEEEEC-CCCCEEEEEEhHHhhc
Confidence 56789999999999999999999999999999 4789999999999985
No 53
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=1.5e-13 Score=105.34 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=84.2
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
.++++++++++.+|.+.|.+++.+++||+|+ ++| +++|++|..|+.+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~~---~~~Givt~~Dl~~~~~------------------------- 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDS--RKQ---QFVGMLTITDFILILR------------------------- 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeC--CCC---EEEEEEEHHHHhhhee-------------------------
Confidence 4688999999999999999999999999964 235 7999999999977210
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~ 270 (358)
+.++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++.
T Consensus 52 -----------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 -----------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred -----------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 5689999999999999999999999999987 99999999999874
No 54
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.52 E-value=5.3e-13 Score=104.34 Aligned_cols=110 Identities=18% Similarity=0.288 Sum_probs=93.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
+++++.+++++.++++.|.+.+...+||+|+ |+++|+++..|+.....++... .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~ 63 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLP----SSTPVGE-------------IA 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCC----CCCCHHH-------------Hh
Confidence 3668899999999999999999999999998 8999999999998765432211 1345666 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
..++.++++++++.++++.|.+++.+++||+| + |+++|+||..|++++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~dl~~~ 111 (111)
T cd04589 64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-G-GEVVGVLEQTDLLSF 111 (111)
T ss_pred CCCcEEECCCCcHHHHHHHHHHhCccEEEEee-C-CEEEEEEEhHHhhcC
Confidence 56789999999999999999999999999999 3 899999999999864
No 55
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=4.1e-13 Score=105.68 Aligned_cols=111 Identities=18% Similarity=0.313 Sum_probs=90.3
Q ss_pred CceEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309 225 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 303 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~-~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 303 (358)
++.++.++.++.++++.|.+++ ...+||+| +|+++|+++..|++.....+.. ..+.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~ 63 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD----LSDLPIGE-------------V 63 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC----ccccCHHH-------------h
Confidence 4667899999999999998888 66777777 5899999999999875543211 11245666 5
Q ss_pred CCccceEEcCC--CCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 304 NGQRCQMCLRS--DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 304 ~~~~~~~v~~~--~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
|..++.++.++ +++.++++.|.+++.+++||+| ++|+++|+||+.|++++
T Consensus 64 ~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd-~~~~~~Gvit~~dl~~~ 115 (115)
T cd04620 64 MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLD-DQGQLIGLVTAESIRQV 115 (115)
T ss_pred cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEc-CCCCEEEEEEhHHhhcC
Confidence 55678888887 7899999999999999999999 47999999999999873
No 56
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=5.9e-13 Score=103.89 Aligned_cols=107 Identities=23% Similarity=0.457 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++..++++.++.+.|.+.+.+++||+|+ |+++|+++..|+....... + ...++.+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~-~-----~~~~~~~-------------~~ 62 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG-L-----GHAPVKD-------------YM 62 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc-c-----ccCcHHH-------------Hh
Confidence 5778999999999999999999999999998 9999999999998765322 1 1456676 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..++.++.+++++.++++.|.+++.+++||++ +|+++|+||..|+++
T Consensus 63 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 63 STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 56789999999999999999999999999999 389999999999985
No 57
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=2.4e-13 Score=109.12 Aligned_cols=112 Identities=21% Similarity=0.401 Sum_probs=88.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH-----hcccccccccccccHHHHHhcCCCCCC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA-----KDKAYAQIHLDEMNIHQALQLGQDANP 299 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~-----~~~~~~~l~~~~~~v~~~l~~~~~~~~ 299 (358)
++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|+.... .++. ..+.+.++.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v~~---------- 68 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGG---ISRSELTVAD---------- 68 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcC---CCchheEHHH----------
Confidence 467899999999999999999999999999889999999999998621 1110 0111345666
Q ss_pred CcccCCccceEE------cCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHH
Q 018309 300 SLGFNGQRCQMC------LRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFR 353 (358)
Q Consensus 300 ~~~~~~~~~~~v------~~~~~l~~a~~~m~~~~~~~l~Vvd~~~-~~liGvis~~Dil~ 353 (358)
+|.++...+ .+++++.++++.|.+++.+++||+| ++ |+++|+||+.|+++
T Consensus 69 ---im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd-~~~~~~~G~it~~di~~ 125 (126)
T cd04640 69 ---VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVD-REHHQIRGIISTSDIAR 125 (126)
T ss_pred ---hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEE-CCCCEEEEEEeHHHHhh
Confidence 454444333 3689999999999999999999999 45 79999999999986
No 58
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.51 E-value=5.9e-13 Score=103.83 Aligned_cols=109 Identities=22% Similarity=0.307 Sum_probs=93.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+...++.. ...++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~-------------~~ 62 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGE-------------VM 62 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHH-------------hc
Confidence 4678999999999999999999999999987 999999999999986643221 1356666 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..++.++++++++.++++.|.+.+.+.+||+| ++|+++|+||..|+++
T Consensus 63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVD-DDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCceEECCCCCHHHHHHHHHHcCCeEEEEEC-CCCcEEEEEEhHHhhc
Confidence 56789999999999999999999999999999 4799999999999985
No 59
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.51 E-value=4.9e-13 Score=104.32 Aligned_cols=110 Identities=24% Similarity=0.358 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.......... ..++.+ .|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~-----~~~~~~-------------~~ 62 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREA-----TVLVGD-------------VM 62 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCccc-----ccCHHH-------------hc
Confidence 4678999999999999999999999999998 9999999999998755432110 123444 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
.+++.++.+++++.++++.|.+++.+++||+| ++|+++|+||..|++++
T Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~~ 111 (111)
T cd04612 63 TRDPVTASPDETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSDLLRA 111 (111)
T ss_pred cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEc-CCCCEEEEEEHHHhhhC
Confidence 67899999999999999999999999999999 47999999999999863
No 60
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.51 E-value=2.2e-13 Score=136.82 Aligned_cols=124 Identities=18% Similarity=0.227 Sum_probs=105.4
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 296 (358)
Q Consensus 217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 296 (358)
+++++|++++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|+.+....... ..+.++.+
T Consensus 448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~----~~~~~v~d------- 516 (574)
T PRK01862 448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD----TTDKTAAD------- 516 (574)
T ss_pred cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc----cccchHHH-------
Confidence 6778899899999999999999999999999999999999999999999999874432211 01235555
Q ss_pred CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHHHhhc
Q 018309 297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRFLLG 357 (358)
Q Consensus 297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~-~~liGvis~~Dil~~~~~ 357 (358)
+|.+++.++++++++.++++.|.+++.+++||+|+++ ++++|+||+.|+++++.+
T Consensus 517 ------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 517 ------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred ------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 6677889999999999999999999999999999422 589999999999998754
No 61
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.50 E-value=4.9e-13 Score=106.02 Aligned_cols=115 Identities=23% Similarity=0.330 Sum_probs=93.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccc------cccccHHHHHhcCCCCC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH------LDEMNIHQALQLGQDAN 298 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~------~~~~~v~~~l~~~~~~~ 298 (358)
++.++.+++++.++++.|.+.+...+||+|+ |+++|+++..|+............. ..+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD--------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH---------
Confidence 4678999999999999999999999999997 9999999999998755322110000 00123333
Q ss_pred CCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 299 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 299 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
+|.+++.++.+++++.++++.|.+.+.+++||+| ++|+++|+||..|+++.
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvvt~~di~~~ 122 (122)
T cd04585 72 ----IMTRDPITVSPDASVEEAAELMLERKISGLPVVD-DQGRLVGIITESDLFRA 122 (122)
T ss_pred ----hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEEC-CCCcEEEEEEHHHhhhC
Confidence 6667899999999999999999999999999999 47999999999999863
No 62
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=7.6e-13 Score=103.53 Aligned_cols=111 Identities=15% Similarity=0.292 Sum_probs=90.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
.+.++.+++++.++++.|.+++.+.++|.+ +|+++|+++.+|+.+...+... .+.+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~-------------~~ 64 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA---GVLDTTVRA-------------IM 64 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC---chhcCCHHH-------------Hh
Confidence 467889999999999999888888887775 5999999999999975543211 111345666 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
..++.++.+++++.++++.|..++..++||+| + |+++|+||..|++++
T Consensus 65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~-~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-G-GTLLGVISFHDVAKA 112 (112)
T ss_pred CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-C-CEEEEEEEHHHhhcC
Confidence 56788999999999999999999999999999 3 899999999999864
No 63
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=4e-13 Score=106.66 Aligned_cols=114 Identities=16% Similarity=0.346 Sum_probs=92.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc------cccccccHHHHHhcCCCCC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ------IHLDEMNIHQALQLGQDAN 298 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~------l~~~~~~v~~~l~~~~~~~ 298 (358)
++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+........... ..+...++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD--------- 71 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH---------
Confidence 4678999999999999999999999999997 99999999999987544211100 0011233444
Q ss_pred CCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 299 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 299 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
+|..++.++.+++++.++++.|.+.+.+++||+| + |+++|+||..|++++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 72 ----IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY 121 (121)
T ss_pred ----HccCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence 5667889999999999999999999999999999 5 899999999999863
No 64
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=6.8e-13 Score=103.92 Aligned_cols=111 Identities=23% Similarity=0.380 Sum_probs=92.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 303 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~-~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 303 (358)
++.++.+++++.+|.+.|.+.+.+++||+|+ |+++|+++..|++. ....+.. ....++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~----~~~~~~~~-------------~ 63 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRD----PDTTTVGD-------------V 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCC----cccCCHHH-------------h
Confidence 4678999999999999999999999999997 99999999999873 3322111 11223555 5
Q ss_pred CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
|...+.++.+++++.++++.|...+.+++||+| ++|+++|+||..|++++
T Consensus 64 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~~ 113 (113)
T cd04622 64 MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVD-DDGRLVGIVSLGDLARA 113 (113)
T ss_pred ccCCccEECCCCCHHHHHHHHHHcCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence 666789999999999999999999999999999 46999999999999863
No 65
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=3.6e-13 Score=105.52 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=90.1
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
+++++.+++++.+|++.|.+++.+.+||+|+ +| +++|+++..|+.+... .. ....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~---~~------~~~~---------- 56 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDE---EN---KVLGQVTLSDLLEIGP---ND------YETL---------- 56 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHhhcc---cc------cccc----------
Confidence 3577899999999999999999999999975 45 7999999999987210 00 0111
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|..++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 57 --~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 57 --KVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred --ChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 244557778889999999999999999999999999998899999999999875
No 66
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=6.3e-13 Score=106.04 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=92.8
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++.+++++.+|++.|.+++.+++||+|+ ++| +++|+++..|+++++................+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~--------- 67 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIP--------- 67 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhh---------
Confidence 6788999999999999999999999999975 225 79999999999987654321100000000000
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
..+.++|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||.+|+..
T Consensus 68 -~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~ 122 (123)
T cd04627 68 -LRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL 122 (123)
T ss_pred -hhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence 0112346678899999999999999999999999999998899999999999853
No 67
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=5.7e-13 Score=104.89 Aligned_cols=111 Identities=17% Similarity=0.225 Sum_probs=91.7
Q ss_pred ceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccccc
Q 018309 136 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 215 (358)
Q Consensus 136 ~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 215 (358)
+.++.+++++.+|++.|.+.+...+||+|+ +| +++|+++..++.+++...... ...
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~~------~~~------------ 58 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGGP------GCT------------ 58 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccc------------
Confidence 567889999999999999999999999975 45 799999999998855321100 011
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
..+.++|..+++++.+++++.++++.|.+++..++||+|++|+++|++|.+|+++
T Consensus 59 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 59 APVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred CCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 2344557778999999999999999999999999999998899999999999874
No 68
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.48 E-value=1.4e-12 Score=130.29 Aligned_cols=195 Identities=18% Similarity=0.170 Sum_probs=137.3
Q ss_pred CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccc----
Q 018309 131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV---- 206 (358)
Q Consensus 131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v---- 206 (358)
+|.++++++++++++.+|++.|.+++++.+||+|+ +| +++|+++..|+.+++........ ......++
T Consensus 73 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~Givt~~di~~~~~~~~~~~~--~~~~~~t~~~i~ 144 (546)
T PRK14869 73 LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---EG---KLLGLVSLSDLARAYMDILDPEI--LSKSPTSLENII 144 (546)
T ss_pred hcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhhcchhh--hhhcCCCHHHHH
Confidence 57789999999999999999999999999999975 45 89999999999987664332100 00001111
Q ss_pred ------------------cccccccc-cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-----------
Q 018309 207 ------------------SSIQLGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN----------- 256 (358)
Q Consensus 207 ------------------~~l~i~~~-~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~----------- 256 (358)
..+.++.- ...+.+.+.+.-+.+..+. .++...+.+.+++++.|+...
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr--~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDR--EDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCc--HHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence 11111110 0122234444423333332 344556788899999887532
Q ss_pred -CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC-ccceEEcCCCCHHHHHHHHhcCCCCEEEE
Q 018309 257 -DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVI 334 (358)
Q Consensus 257 -g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~V 334 (358)
+.+.++.|..|.......-. ...++.+ +|. +++.++++++++.++.+.|.+++.+++||
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~------~~~~V~~-------------iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PV 283 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLIN------QSIPVSY-------------IMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPV 283 (546)
T ss_pred hCCCeEEEecccHHHHHHHhh------cCCCHHH-------------hccCCCcEEECCCCcHHHHHHHHHhcCCCceEE
Confidence 35778888888777543211 1356676 787 78999999999999999999999999999
Q ss_pred EeCCCCeEEEEEehHHHHHHh
Q 018309 335 VEAGSKRVEGIISLSDVFRFL 355 (358)
Q Consensus 335 vd~~~~~liGvis~~Dil~~~ 355 (358)
+| ++|+++|+||..|+++..
T Consensus 284 vd-~~g~lvGiit~~dl~~~~ 303 (546)
T PRK14869 284 VD-EDGKVVGVISRYHLLSPV 303 (546)
T ss_pred Ec-CCCCEEEEEEHHHhhccc
Confidence 99 589999999999999753
No 69
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=9.4e-13 Score=104.72 Aligned_cols=115 Identities=15% Similarity=0.197 Sum_probs=92.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-ccc-----ccccccHHHHHhcCCCCC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI-----HLDEMNIHQALQLGQDAN 298 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~-~~l-----~~~~~~v~~~l~~~~~~~ 298 (358)
++.++.+++++.++.+.|.+++++++||+|+ |+++|+++..|+...+..... ... .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ--------- 71 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH---------
Confidence 4678999999999999999999999999997 999999999999875432100 000 000112333
Q ss_pred CCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 299 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 299 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
+|.++++++.+++++.++++.|.+++..++||+| ++|+++|++|+.|++++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~-~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 72 ----IMTRDPITVSPDTPVDEASKLLLENSISCLPVVD-ENGQLIGIITWKDLLKY 122 (122)
T ss_pred ----hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEEC-CCCCEEEEEEHHHhhhC
Confidence 5667899999999999999999999999999999 47999999999999864
No 70
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.47 E-value=7.2e-13 Score=127.07 Aligned_cols=118 Identities=12% Similarity=0.251 Sum_probs=101.4
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309 217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 293 (358)
Q Consensus 217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~ 293 (358)
+++++|++ ++.+++.++++.++++.+.+++++++||.+++ ++++|+++.+|++...... ...+.+
T Consensus 192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~---- 259 (408)
T TIGR03520 192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQS---- 259 (408)
T ss_pred EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHH----
Confidence 56777986 68999999999999999999999999999864 6999999999998644311 223444
Q ss_pred CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309 294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357 (358)
Q Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~ 357 (358)
++ +++.++++++++.++++.|.+++.|..+|+| +.|..+|+||..||++.++|
T Consensus 260 ---------~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 260 ---------LL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred ---------Hc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhC
Confidence 33 3678999999999999999999999999999 58999999999999999875
No 71
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.47 E-value=3.2e-13 Score=107.87 Aligned_cols=117 Identities=23% Similarity=0.442 Sum_probs=98.5
Q ss_pred CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309 129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 208 (358)
Q Consensus 129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~ 208 (358)
..+|..|++.+.|++++.+|+++|.++|++.+||++. + +++|-+|.+++.+...+.. ..++.
T Consensus 68 ~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~~le~~-----------e~i~~ 129 (187)
T COG3620 68 KTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRALLEGM-----------ESIRS 129 (187)
T ss_pred hhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHHHhccc-----------cchhh
Confidence 4589999999999999999999999999999999964 3 8999999999999665332 22222
Q ss_pred cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309 209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 273 (358)
Q Consensus 209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~ 273 (358)
+ ++.++|..+++++++++++.-+-.++..|+ ++.|+ ++|+++|+||+.|++++++
T Consensus 130 ~-------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 130 L-------RVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred h-------hHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHh
Confidence 2 567789999999999999988888877654 57777 6899999999999999765
No 72
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.47 E-value=8.6e-13 Score=129.42 Aligned_cols=173 Identities=18% Similarity=0.250 Sum_probs=127.2
Q ss_pred CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309 131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 210 (358)
Q Consensus 131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~ 210 (358)
+|..++++++++.++.++++.|.+++++++||+|+ .+ +++|+++.+|+.... . ...
T Consensus 92 im~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~---~g---~lvGiVt~~DL~~~~-----~-------~~~------ 147 (486)
T PRK05567 92 GVVTDPVTVTPDTTLAEALALMARYGISGVPVVDE---NG---KLVGIITNRDVRFET-----D-------LSQ------ 147 (486)
T ss_pred cccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc---CC---EEEEEEEHHHhhhcc-----c-------CCC------
Confidence 57789999999999999999999999999999974 45 899999999986410 0 112
Q ss_pred cccccccccccCC-CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHH
Q 018309 211 LGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ 289 (358)
Q Consensus 211 i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~ 289 (358)
.+.++|. .+++++.+++++.++++.|.+++++.+||+|++|+++|++|.+|++..............++.+..
T Consensus 148 ------~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~a 221 (486)
T PRK05567 148 ------PVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGA 221 (486)
T ss_pred ------cHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEe
Confidence 2344576 678999999999999999999999999999999999999999999985421100000000111111
Q ss_pred HHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 290 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 290 ~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
.+..++ .-.++.+.|.+.+++.+ ++|..+|+..|+++..+.++.
T Consensus 222 ------------------ai~~~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 222 ------------------AVGVGA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred ------------------ecccCc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence 122223 22788889999999954 777445888887777666654
No 73
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=5.7e-13 Score=103.88 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=87.6
Q ss_pred ecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309 229 LRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 303 (358)
Q Consensus 229 v~~~~~l~~a~~~m~~~~-----~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 303 (358)
+.+++++.++++.|.+++ +..+||+|++|+++|+++.++++.. . . +.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~----~---~---~~~v~~-------------~ 58 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA----D---P---DTPVSD-------------I 58 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC----C---C---cchHHH-------------H
Confidence 567889999999998877 4789999988999999999998751 1 0 345666 4
Q ss_pred CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309 304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 355 (358)
Q Consensus 304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~ 355 (358)
+..++.++.+++++.++++.|..++.+.+||+| ++|+++|+||..|+++++
T Consensus 59 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 59 MDTDVISVSADDDQEEVARLFEKYDLLALPVVD-EEGRLVGIITVDDVIDVI 109 (109)
T ss_pred hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeEC-CCCcEEEEEEhHHhhhhC
Confidence 455789999999999999999999999999999 479999999999999864
No 74
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.47 E-value=1.3e-12 Score=101.71 Aligned_cols=109 Identities=19% Similarity=0.366 Sum_probs=89.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++.+.|.+++.+.+||+|+ |+++|+++..|+.+...+.... . +.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~-~---~~~~~~-------------~~ 63 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAK-F---SLPVRE-------------VM 63 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccc-c---CcCHHH-------------Hh
Confidence 4678999999999999999999999999997 9999999999999865432111 0 245565 45
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
.+++.++++++++.++.+.|.+ .. .+||++ ++|+++|+||..|++++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~-~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 64 GEPLPTVDPDAPIEELSELLDR-GN-VAVVVD-EGGKFVGIITRADLLKY 110 (110)
T ss_pred cCCCceeCCCCcHHHHHHHHHh-CC-ceeEEe-cCCeEEEEEeHHHhhcC
Confidence 5678899999999999999988 33 478998 47999999999999864
No 75
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=2.3e-12 Score=100.73 Aligned_cols=110 Identities=15% Similarity=0.314 Sum_probs=91.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++++.|.+++.+.+||+|+ ++++|+++..|++..+..+.... .+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~~~~-------------~~ 64 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKP---REVPVGE-------------VM 64 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCc---ccCCHHH-------------hc
Confidence 4678899999999999999999999999986 49999999999998543221111 1345666 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
.+++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+||..|+++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~ 111 (112)
T cd04802 65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM 111 (112)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence 567899999999999999999999999999994 49999999999975
No 76
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.47 E-value=1.5e-12 Score=102.49 Aligned_cols=106 Identities=22% Similarity=0.324 Sum_probs=89.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 301 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~---~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 301 (358)
++.++.+++++.++++.|.+++...+||+|+ +|+++|+++..|+..... . ..++.+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~--------~~~v~~------------ 61 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-S--------ETPLSE------------ 61 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-c--------CCCHHH------------
Confidence 4678899999999999999999999999997 799999999999875321 1 234566
Q ss_pred ccCCccceEEcC--CCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 302 GFNGQRCQMCLR--SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 302 ~~~~~~~~~v~~--~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
+|..+..++.. ++++.++++.|..++.+++||+| ++|+++|+||..|+++
T Consensus 62 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~-~~~~~~Gvit~~di~~ 113 (114)
T cd04602 62 -VMTPREVLVVAPTGITLEEANEILRESKKGKLPIVN-DDGELVALVTRSDLKK 113 (114)
T ss_pred -hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC-CCCeEEEEEEHHHhhc
Confidence 55556667766 99999999999999999999999 4799999999999975
No 77
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=7.9e-13 Score=104.72 Aligned_cols=111 Identities=19% Similarity=0.296 Sum_probs=90.3
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++++++++.+|++.|.+++.+.+||+|+ +| +++|+++..++.+........ ...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~~~-------~~~---------- 58 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGADL-------QKV---------- 58 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCCCc-------cCC----------
Confidence 6788999999999999999999999999975 45 799999999998854311100 011
Q ss_pred cccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~---g~liGiis~~dl~~ 270 (358)
.++++|.. ++.++.+++++.++++.|.+++++.+||+|++ |+++|++|.+|+.+
T Consensus 59 --~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 59 --PVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred --CHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 23344653 68899999999999999999999999999987 79999999999864
No 78
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.46 E-value=3.4e-12 Score=120.54 Aligned_cols=196 Identities=17% Similarity=0.204 Sum_probs=146.9
Q ss_pred eEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccCCCCCCHHHHhhcchHHHHHHHHhhc
Q 018309 41 QVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 120 (358)
Q Consensus 41 ~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 120 (358)
..+.+.+..++.+|...+.++++.++||.|++.+..++++|..-++..+..... .+-...+-..++.+.
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~---~~~~~~~l~~s~~dl-------- 231 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGR---LLPLPSLLSKSLSDL-------- 231 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhc---ccccHHHhhCCHHHh--------
Confidence 449999999999999999999999999999888899999999999987765432 111122222222221
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcc
Q 018309 121 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP 200 (358)
Q Consensus 121 ~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~ 200 (358)
++ .....+..+..++++.+|++.|.+++++++||++. .| +.+|..+..|+...+....-..
T Consensus 232 ------~i--g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g---~~v~~~s~~Dv~~l~~~~~~~~----- 292 (381)
T KOG1764|consen 232 ------GI--GTWSNIASISEDTPVIEALKIMSERRISALPVVDE---NG---KKVGNYSRFDVIHLAREGTYNN----- 292 (381)
T ss_pred ------Cc--chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CC---ceecceehhhhhhhhhcCccCc-----
Confidence 11 13447889999999999999999999999999975 44 5699999999977554332111
Q ss_pred ccccc-ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309 201 ILQQP-VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 273 (358)
Q Consensus 201 ~~~~~-v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~ 273 (358)
...+ +++. . .....-...++++.+++++.+++..|..++++++.|||++|.++|++|.+|++..+.
T Consensus 293 -~~~~~l~~~-----~-~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 293 -LDLSCLSEA-----L-SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLV 359 (381)
T ss_pred -cchhHHHHH-----h-hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHH
Confidence 1111 1111 0 001112235899999999999999999999999999999999999999999998665
No 79
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.46 E-value=9.5e-13 Score=102.49 Aligned_cols=106 Identities=20% Similarity=0.387 Sum_probs=89.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++..++++.++++.|.+++.+.+||+|++|+++|+++.+++..... .+.++.+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~-------------~~ 60 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSE-------------VM 60 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHH-------------hc
Confidence 4678899999999999999999999999998899999999999864211 1345666 44
Q ss_pred CccceEEcC-CCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLR-SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~-~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..++..+.+ ++++.++++.|.+.+.+++||+| ++|+++|+||..|+++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD-DEGKLKGLITVKDIEK 109 (110)
T ss_pred ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc-CCCCEEEEEEhhhhhc
Confidence 445566666 99999999999999999999999 4799999999999985
No 80
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=2e-12 Score=101.70 Aligned_cols=112 Identities=16% Similarity=0.279 Sum_probs=91.7
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++.+++++.+|++.|.+++.+.+||+++ +.| +++|+++..|+++++....... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~---~~~G~v~~~dl~~~~~~~~~~~------~~~---------- 60 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES---DAYGIVTMRDILKKVVAEGRDP------DRV---------- 60 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC---cEEEEEehHHHHHHHHhCCCCC------Ccc----------
Confidence 5788999999999999999999999999975 115 7999999999998664321100 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|+++..|++.
T Consensus 61 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 61 --NVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred --CHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 234457778999999999999999999999999999987 99999999999874
No 81
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=1.3e-12 Score=104.13 Aligned_cols=122 Identities=19% Similarity=0.358 Sum_probs=95.7
Q ss_pred CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 213 (358)
Q Consensus 134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 213 (358)
+++.++.++.++.++++.|.+++++++||+++ .| +++|+++..++.+++...... ......+ ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~-------~~~ 66 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRR--PLRGRLR-------GRD 66 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccc--hhhhhhh-------ccc
Confidence 46788999999999999999999999999964 35 899999999998765422110 0000000 011
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
....++++|..+++++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 122456668888999999999999999999999999999998999999999999875
No 82
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=2e-12 Score=99.88 Aligned_cols=103 Identities=16% Similarity=0.276 Sum_probs=89.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++.+++++.++++.|.+++.+.+||+| +|+++|+++..|+..... +.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~-------------~~ 57 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVAD-------------AM 57 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHH-------------Hc
Confidence 467789999999999999999999999998 699999999999986321 234555 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..++.++++++++.++++.|..++..++||+| + |+++|+||..|++.
T Consensus 58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~~l~~ 104 (105)
T cd04599 58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR-E-RKLVGIITKGTIAL 104 (105)
T ss_pred cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE-C-CEEEEEEEHHHhcc
Confidence 56789999999999999999999999999999 4 99999999999974
No 83
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=1.8e-12 Score=100.42 Aligned_cols=105 Identities=16% Similarity=0.332 Sum_probs=90.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++..+.++.++++.|.+.+.+.+||+|+ |+++|+++..|++.. .. +.++.+ +|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~----~~------~~~~~~-------------~~ 58 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK----DP------DETVEE-------------IM 58 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc----Cc------cccHHH-------------hC
Confidence 5778999999999999999888889999987 999999999999852 10 234566 55
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
..++.++.+++++.++++.|.+++.+++||+| ++|+++|+|+..|++++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvi~~~di~~~ 107 (107)
T cd04610 59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVD-ENNNLVGIITNTDVIRS 107 (107)
T ss_pred CCCCeEECCCCCHHHHHHHHHHhCCCeEeEEC-CCCeEEEEEEHHHhhcC
Confidence 56789999999999999999999999999999 47999999999999863
No 84
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.45 E-value=2.2e-12 Score=102.23 Aligned_cols=115 Identities=20% Similarity=0.322 Sum_probs=93.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc-c----ccccccHHHHHhcCCCCCC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-I----HLDEMNIHQALQLGQDANP 299 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~-l----~~~~~~v~~~l~~~~~~~~ 299 (358)
++.++++++++.+|.+.|.+.+.+++||+|++|+++|+++..|+........... . .....++.+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~---------- 71 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE---------- 71 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----------
Confidence 4678899999999999999999999999999899999999999987543211000 0 011244555
Q ss_pred CcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 300 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 300 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
+|..++.++.+++++.++++.|.+++.+.+||+| + |+++|++|..|++++
T Consensus 72 ---~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvv~~~di~~~ 121 (121)
T cd04584 72 ---IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D-GRLVGIITETDLLRT 121 (121)
T ss_pred ---HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHhhcC
Confidence 4556788999999999999999999999999999 4 899999999999863
No 85
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.45 E-value=4.9e-12 Score=122.80 Aligned_cols=158 Identities=13% Similarity=0.157 Sum_probs=118.7
Q ss_pred CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309 131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 210 (358)
Q Consensus 131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~ 210 (358)
+|..+++++++++++.+|++.|.+++++.+||+|+ +| +++|++|.+|+... . ...
T Consensus 94 iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~---~g---klvGIVT~rDL~~~------~-------~~~------ 148 (479)
T PRK07807 94 LVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDE---EG---RPVGVVTEADCAGV------D-------RFT------ 148 (479)
T ss_pred ccccCCeEECCCCCHHHHHHHHHhcCCceEEEECC---CC---eEEEEEeHHHHhcC------c-------cCC------
Confidence 67889999999999999999999999999999974 45 89999999998430 0 011
Q ss_pred cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 018309 211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 290 (358)
Q Consensus 211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~ 290 (358)
.+.++|+.+++++++++++.+|++.|.++++..+||+|++|+++|+||.+||++........ +.-....+..
T Consensus 149 ------~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~-~~~g~l~V~a- 220 (479)
T PRK07807 149 ------QVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAV-DAAGRLRVAA- 220 (479)
T ss_pred ------CHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchh-hhhhccchHh-
Confidence 24556888999999999999999999999999999999899999999999999865433110 1000112222
Q ss_pred HhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCe
Q 018309 291 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 341 (358)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~ 341 (358)
.. .......+.++.|.+.++.. .++|..+|.
T Consensus 221 -----------------av--~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~~ 251 (479)
T PRK07807 221 -----------------AV--GINGDVAAKARALLEAGVDV-LVVDTAHGH 251 (479)
T ss_pred -----------------hh--ccChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence 11 22234667788888888876 467743444
No 86
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.43 E-value=4.1e-12 Score=98.51 Aligned_cols=111 Identities=23% Similarity=0.433 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++..++++.++++.|.+++.+.+||+|++++++|+++..|+........... ...+.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~----~~~~~~-------------~~ 64 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDP----LVTVGD-------------VM 64 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCc----cccHHH-------------Hh
Confidence 4677899999999999999999999999998899999999999998664322111 011333 44
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..++.++.+++++.++++.|...+.+.+||+| ++|+++|+++..|+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVD-DEGRLVGIVTRSDILR 112 (113)
T ss_pred cCCceecCCCcCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHhhc
Confidence 56788999999999999999999999999999 4799999999999986
No 87
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.43 E-value=1.1e-12 Score=127.99 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=93.4
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcc
Q 018309 226 FAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 302 (358)
Q Consensus 226 ~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~---~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~ 302 (358)
++++++++++.+|++.|.+++.+.+||+|+ +|+++|+||..|+.... ...+.++.+
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--------~~~~~~V~d------------- 165 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--------MSLDTKVKD------------- 165 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--------cCCCCCHHH-------------
Confidence 468999999999999999999999999996 68999999999986421 011467787
Q ss_pred cCCc--cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 303 FNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 303 ~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
+|++ +++++++++++.+|++.|.+++++++||+| ++|+++|+||+.|+++.
T Consensus 166 IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD-~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 166 FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD-KNGNLVYLVFRKDYDSH 218 (502)
T ss_pred HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEhHHHHhc
Confidence 6654 789999999999999999999999999999 57999999999999885
No 88
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.43 E-value=3.2e-12 Score=98.82 Aligned_cols=100 Identities=15% Similarity=0.254 Sum_probs=86.5
Q ss_pred eEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCc
Q 018309 227 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ 306 (358)
Q Consensus 227 ~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~ 306 (358)
+++.+++++.++++.|.+.+.+++||+|+ |+++|+++..|+.... ..++.+ +|..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~-----------~~~~~~-------------~~~~ 58 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT-----------YGDVVD-------------YIVR 58 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc-----------ccchhh-------------hhhc
Confidence 46899999999999999999999999998 9999999999997631 112333 4445
Q ss_pred cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 307 RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 307 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
++.++++++++.++++.|.+++..++||+| + |+++|++|..|+++
T Consensus 59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~ 103 (104)
T cd04594 59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD 103 (104)
T ss_pred CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence 688999999999999999999999999999 3 89999999999975
No 89
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=3.1e-12 Score=99.88 Aligned_cols=109 Identities=19% Similarity=0.401 Sum_probs=91.2
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++.+++++.+|++.|.+.+...+||+++ +| +++|+++..++.+++..... ..
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~---------~~---------- 56 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGGP---------DA---------- 56 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcCC---------CC----------
Confidence 5678899999999999998888999999964 45 79999999999886542210 11
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|++|.+|+..
T Consensus 57 --~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 57 --PVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred --cHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 233447778899999999999999999999999999998899999999999864
No 90
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.42 E-value=1.9e-12 Score=117.85 Aligned_cols=113 Identities=17% Similarity=0.292 Sum_probs=97.6
Q ss_pred ccccccCCCC-ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 018309 216 PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 294 (358)
Q Consensus 216 ~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~ 294 (358)
.+++++|.++ +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....+.. .+.++.+
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~-----~~~~v~~----- 224 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGS-----LKSEVRD----- 224 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCc-----ccCcHHH-----
Confidence 3677889888 8999999999999999999999999999999999999999999885432211 1356776
Q ss_pred CCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEe
Q 018309 295 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 347 (358)
Q Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis 347 (358)
+|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+|+
T Consensus 225 --------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~l~GvI~ 268 (268)
T TIGR00393 225 --------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVD-DHNKVLGVLH 268 (268)
T ss_pred --------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC-CCCeEEEEEC
Confidence 6777899999999999999999999999999999 4789999985
No 91
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=3.2e-12 Score=102.42 Aligned_cols=124 Identities=15% Similarity=0.229 Sum_probs=92.0
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
.++++++++++.+|++.|.++++..+||+|+ .| +++|+++..|+.++......... ....+...+. ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~----~~~~~~~~~~--~~ 69 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDLLL----YRTITFKELS--EK 69 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchhhc----ccchhhhhhh--hh
Confidence 4678999999999999999999999999975 35 79999999999886532211000 0000000000 00
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.....+.+..++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 70 FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred cccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 01112346677899999999999999999999999999998899999999999875
No 92
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.42 E-value=7.4e-12 Score=98.55 Aligned_cols=111 Identities=25% Similarity=0.436 Sum_probs=94.4
Q ss_pred CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 018309 222 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 301 (358)
Q Consensus 222 m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 301 (358)
|...+.++.++.++.+|...|.++++..+||++. ++++|++|.+|+......+.... .++.+
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~-----~~v~~------------ 66 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRL-----LPVKE------------ 66 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCcc-----ccHHH------------
Confidence 4467899999999999999999999999999974 47999999999999765432211 13555
Q ss_pred ccCCccceEEcCCCCHHHHHHHHhc-CCCCEEEEEeCCCC-eEEEEEehHHHH
Q 018309 302 GFNGQRCQMCLRSDPLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIISLSDVF 352 (358)
Q Consensus 302 ~~~~~~~~~v~~~~~l~~a~~~m~~-~~~~~l~Vvd~~~~-~liGvis~~Dil 352 (358)
+|..+++++.+++++.++.+.|.. ++++++||++ +++ +++|++|.+|++
T Consensus 67 -v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~-~~~~~lvGivt~~di~ 117 (117)
T COG0517 67 -VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVD-DDGGKLVGIITLSDIL 117 (117)
T ss_pred -hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEE-CCCCeEEEEEEHHHcC
Confidence 677789999999999999999999 7999999999 465 999999999974
No 93
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.42 E-value=2.6e-12 Score=124.73 Aligned_cols=113 Identities=17% Similarity=0.323 Sum_probs=98.6
Q ss_pred ccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309 220 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 296 (358)
Q Consensus 220 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~---g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 296 (358)
+.|.+++.++.+++++.++++.|.+++++++||+|++ ++++|+++.+|+..... .+.++.+
T Consensus 84 ~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~d------- 147 (450)
T TIGR01302 84 NGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSE------- 147 (450)
T ss_pred CceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHH-------
Confidence 3366678999999999999999999999999999987 79999999999975321 1356777
Q ss_pred CCCCcccCC-ccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309 297 ANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 355 (358)
Q Consensus 297 ~~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~ 355 (358)
+|. .+++++++++++.++++.|.+++.+.+||+| ++|+++|+||+.||++.+
T Consensus 148 ------vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD-e~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 148 ------VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD-KNGELVGLITMKDIVKRR 200 (450)
T ss_pred ------hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEhHHhhhcc
Confidence 565 4899999999999999999999999999999 589999999999999874
No 94
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=5.9e-12 Score=98.38 Aligned_cols=111 Identities=20% Similarity=0.364 Sum_probs=91.4
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.+++++.++.++++.|.+++++.+||+++ ++ +++|+++..++.+++....... ..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~~------~~----------- 58 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGASA------LD----------- 58 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCCc------cc-----------
Confidence 5678899999999999999999999999964 34 7999999999998664321110 01
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
..+.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|++|.+|+++
T Consensus 59 -~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 59 -TPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred -cCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 1244557778899999999999999999999999999987 99999999999864
No 95
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.41 E-value=4.6e-12 Score=96.67 Aligned_cols=94 Identities=13% Similarity=0.238 Sum_probs=83.7
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
+++++.+++++.+|++.|.+++++.+||+|+ +| +++|+++..|+.+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~-------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DG---KLSGIITERDLIAKS-------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHhcCC--------------------------
Confidence 5778999999999999999999999999964 45 799999999997710
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++.+++++.++++.|.+++.+++||+|++|+++|++|.+|+++
T Consensus 50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1668899999999999999999999999998899999999999874
No 96
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.41 E-value=5.3e-12 Score=97.67 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=88.1
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.+++++.++.+|++.|.+++.+.+||+|+ +| +++|+++..++.+.. ..+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g---~~~Giv~~~dl~~~~--------------~~~--------- 52 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---DG---QPLGFVTRREAARAS--------------GGC--------- 52 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEeHHHHHHhc--------------ccc---------
Confidence 5678899999999999999999999999964 45 799999999998721 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
++++|.+.+..+.+++++.++++.|.+++...+||+|++|+++|+++.+|++.
T Consensus 53 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 53 ---CGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred ---hhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 23346667788999999999999999999999999998899999999999874
No 97
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.41 E-value=1.2e-12 Score=104.88 Aligned_cols=112 Identities=15% Similarity=0.224 Sum_probs=91.5
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
+++++.+++++.+|++.|.+++++.+||+|+ +| +++|+++..++++.+...... ...
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~~---------- 59 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PSD---------- 59 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CCC----------
Confidence 6788999999999999999999999999965 35 799999999998755432111 112
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHH---------hCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLV---------QADVSSIPIVDDNDSLLDIYSRSDITAL 271 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~---------~~~~~~vpVvd~~g~liGiis~~dl~~~ 271 (358)
.++++|.+++.++.+++++.++.+++. +.+...+||+|++|+++|++|.+|++..
T Consensus 60 --~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 60 --PVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred --cHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 355669999999999999999999653 3367888999988999999999999874
No 98
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=6.7e-12 Score=103.07 Aligned_cols=126 Identities=19% Similarity=0.304 Sum_probs=92.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-ccc------ccccccHHHHHhc----
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI------HLDEMNIHQALQL---- 293 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~-~~l------~~~~~~v~~~l~~---- 293 (358)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+.+.+..... ..+ .....++.+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 4678999999999999999999999999997 999999999999886543221 000 0000111110000
Q ss_pred ---CCCCCCCc-ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 294 ---GQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 294 ---~~~~~~~~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
...+..+. ++|..++.++.+++++.++++.|.+.+.+++||++ + |+++|++|..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE-D-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence 00000111 15667899999999999999999999999999999 4 89999999999975
No 99
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.41 E-value=1.9e-11 Score=118.57 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=116.1
Q ss_pred CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309 131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 210 (358)
Q Consensus 131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~ 210 (358)
.|.++++++.+++++.+|++.|.+++++.+||+|+ + +++|++|.+|+... . ...
T Consensus 93 im~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~----g---klvGIVT~rDL~~~------~-------~~~------ 146 (475)
T TIGR01303 93 LVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE----D---RPVGLVTDSDLLGV------D-------RFT------ 146 (475)
T ss_pred ccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC----C---EEEEEEEHHHhhcC------C-------CCC------
Confidence 56778899999999999999999999999999863 4 79999999998430 0 011
Q ss_pred cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 018309 211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 290 (358)
Q Consensus 211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~ 290 (358)
.+.++|+.+++++.+++++.+|++.|.+++++.+||+|++|+++|+||.+|+++........ +.-..+.+..
T Consensus 147 ------~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~-d~~grl~Vga- 218 (475)
T TIGR01303 147 ------QVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPAT-DAAGRLRIGA- 218 (475)
T ss_pred ------CHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchh-hhccCceehh-
Confidence 24556888999999999999999999999999999999999999999999999865433110 0000111111
Q ss_pred HhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeE
Q 018309 291 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV 342 (358)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~l 342 (358)
. +.......+.++.|.+.++..+ ++|..+|+.
T Consensus 219 -----------------a--v~~~~~~~~ra~~Lv~aGVd~i-~~D~a~g~~ 250 (475)
T TIGR01303 219 -----------------A--VGINGDVGGKAKALLDAGVDVL-VIDTAHGHQ 250 (475)
T ss_pred -----------------e--eeeCccHHHHHHHHHHhCCCEE-EEeCCCCCc
Confidence 1 2233455567777777777654 556434554
No 100
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.41 E-value=3.1e-12 Score=125.53 Aligned_cols=115 Identities=21% Similarity=0.368 Sum_probs=100.5
Q ss_pred ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 018309 218 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 297 (358)
Q Consensus 218 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~ 297 (358)
+.+.|..++.++.+++++.++++.|.+++++++||+|++++++|+++.+|+..... . ..++.+
T Consensus 89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~------~---~~~V~d-------- 151 (486)
T PRK05567 89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD------L---SQPVSE-------- 151 (486)
T ss_pred hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc------C---CCcHHH--------
Confidence 44557788999999999999999999999999999999999999999999964211 1 345666
Q ss_pred CCCcccCC-ccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309 298 NPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 355 (358)
Q Consensus 298 ~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~ 355 (358)
+|. ++++++.+++++.++++.|.+++++.+||+| ++|+++|+||..||++.+
T Consensus 152 -----im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD-e~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 152 -----VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD-DNGRLKGLITVKDIEKAE 204 (486)
T ss_pred -----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHhhhhh
Confidence 555 5789999999999999999999999999999 589999999999999865
No 101
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.41 E-value=2.9e-12 Score=124.24 Aligned_cols=113 Identities=12% Similarity=0.174 Sum_probs=98.1
Q ss_pred cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 018309 219 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN 298 (358)
Q Consensus 219 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 298 (358)
.+.|.++++++.+++++.++++.|.+++++.+||+|+ ++++|++|.+|+... . . ..++.+
T Consensus 91 ~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~---~----~---~~~V~d--------- 150 (475)
T TIGR01303 91 RDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGV---D----R---FTQVRD--------- 150 (475)
T ss_pred hhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcC---C----C---CCCHHH---------
Confidence 3457778999999999999999999999999999984 799999999998431 0 1 245676
Q ss_pred CCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309 299 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356 (358)
Q Consensus 299 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~ 356 (358)
+|.++++++++++++.+|++.|.+++++++||+| ++|+++|+||..||+++..
T Consensus 151 ----IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD-~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 151 ----IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVD-ADGTLAGILTRTGALRATI 203 (475)
T ss_pred ----HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHHh
Confidence 7778999999999999999999999999999999 4799999999999998653
No 102
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.41 E-value=3.8e-12 Score=124.49 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=97.4
Q ss_pred CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 018309 222 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN 298 (358)
Q Consensus 222 m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~---~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 298 (358)
|.++++++.+++++.++++.|.+++++.+||+|+ +|+++|++|.+|+.... ..+.++.+
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~~~~~V~e--------- 167 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------DRETKLSE--------- 167 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------ccCCcHHH---------
Confidence 5567899999999999999999999999999987 48999999999997532 11467777
Q ss_pred CCcccCCcc--ceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309 299 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 355 (358)
Q Consensus 299 ~~~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~ 355 (358)
+|.++ ++++.+++++.+|++.|.+++.+++||+| ++++++|+||+.||++.+
T Consensus 168 ----IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD-~~g~LvGvITr~DIlk~~ 221 (505)
T PLN02274 168 ----VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN-EDGELVDLVTRTDVKRVK 221 (505)
T ss_pred ----HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHh
Confidence 55544 78999999999999999999999999999 479999999999999876
No 103
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=6e-12 Score=98.67 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=90.1
Q ss_pred ceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccccc
Q 018309 136 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 215 (358)
Q Consensus 136 ~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 215 (358)
.++++++.++.+|++.|.+++.+.+||+++ +| +++|+++..|+.+.+..... ...
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~~----------- 58 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LDD----------- 58 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cCC-----------
Confidence 567899999999999999999999999965 45 79999999999875432110 111
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus 59 -~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 59 -PVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred -CHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 234447777889999999999999999999999999998899999999999863
No 104
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=6.8e-12 Score=97.75 Aligned_cols=108 Identities=21% Similarity=0.430 Sum_probs=90.8
Q ss_pred CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 213 (358)
Q Consensus 134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 213 (358)
++++++.++.++.+|++.|.+++...+||+++ +| +++|+++..++++.+.... .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~-----------~~-------- 56 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDK-----------KS-------- 56 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCc-----------cC--------
Confidence 36788999999999999999999999999964 45 8999999999987443210 11
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
+.++|..++.++.+++++.++++.|.+++...+||++++|+++|++|..|+.+
T Consensus 57 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 57 ----VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred ----HHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 23346667889999999999999999999999999999999999999999864
No 105
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.40 E-value=1.4e-12 Score=116.96 Aligned_cols=116 Identities=17% Similarity=0.254 Sum_probs=104.0
Q ss_pred cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 018309 217 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 294 (358)
Q Consensus 217 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~ 294 (358)
.|.++|. ....++.+++++.+..++-.+.+.+++||+|...+++|++|.+|+..... +.++..
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~----------~t~ieK----- 253 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP----------STTIEK----- 253 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC----------CccHHH-----
Confidence 4566677 56888999999999999999999999999999999999999999987321 456666
Q ss_pred CCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309 295 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356 (358)
Q Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~ 356 (358)
+|+++++++.+.+++..+.++|+-.++.-+||+| ++.+++|+||++|+++++-
T Consensus 254 --------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~-~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 254 --------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVD-SNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred --------HhccCCeeecccchHHHHHHHHHhccceeeeEEc-CCceEEEEEEHHHHHHHHH
Confidence 8889999999999999999999999999999999 5899999999999999874
No 106
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=3.9e-12 Score=99.95 Aligned_cols=109 Identities=14% Similarity=0.241 Sum_probs=87.3
Q ss_pred CceEeCCCCCHHHHHHHHhhCC-cceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 213 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~-~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 213 (358)
++.++++++++.+|++.|.+++ .+.+||+|+ +| +++|+++..|+++...... ...+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~~-------- 58 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQTT-------- 58 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------cccc--------
Confidence 5678899999999999987765 889999964 45 7999999999988543211 1112
Q ss_pred ccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 214 WVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 214 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
+.++|.. ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 59 ----v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 59 ----VIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ----hhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 2233542 3568999999999999999999999999998899999999999864
No 107
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=7.3e-12 Score=99.04 Aligned_cols=113 Identities=18% Similarity=0.283 Sum_probs=89.9
Q ss_pred CceEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309 225 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 303 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~-~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 303 (358)
++.++.+++++.++++.|.+.+ .+.+||+|+ |+++|+++..|+....... +......+.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~-~~~~~~~~~~v~~-------------~ 66 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTP-YGRALYGKKPVSE-------------V 66 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhch-hhHHHHcCCcHHH-------------h
Confidence 4567899999999999998877 899999998 9999999999998754321 1000011344555 6
Q ss_pred CCccceEEcCCCCHHHHHHHHhcCCCC---EEEEEeCCCCeEEEEEehHHHHH
Q 018309 304 NGQRCQMCLRSDPLHKVMERLANPGVR---RLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~---~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
|..++.++.+++++.++++.|.+++.+ ..+|++ ++|+++|+||..|+++
T Consensus 67 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~-~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 67 MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVT-EEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEe-eCCeEEEEEEHHHHhc
Confidence 667899999999999999999999864 346888 4799999999999975
No 108
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.39 E-value=8e-12 Score=98.28 Aligned_cols=111 Identities=18% Similarity=0.367 Sum_probs=91.0
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++..+.+++++.++++.|.+.+.+.+||+|+ .| +++|+++..|+.+.+...... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~~---------- 58 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EPS---------- 58 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------ccc----------
Confidence 4667889999999999999999999999965 45 799999999998855321100 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~--g~liGiis~~dl~~ 270 (358)
.+.++|..++.++.+++++.++++.|.+++...+||+|++ |+++|++|.+|++.
T Consensus 59 --~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 59 --AVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred --cHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 1334477788999999999999999999999999999987 89999999999875
No 109
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.39 E-value=3.4e-12 Score=124.22 Aligned_cols=117 Identities=15% Similarity=0.249 Sum_probs=101.4
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHh-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 018309 216 PRIGEANGRPFAMLRPTASLGSALALLVQ-----ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 290 (358)
Q Consensus 216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-----~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~ 290 (358)
.+++++|++++.+++++.++.++++.|.+ ++...++|+|++++++|+++.+|++.. . .+.++.+
T Consensus 131 ~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a---~-------~~~~v~~- 199 (449)
T TIGR00400 131 DSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA---K-------PEEILSS- 199 (449)
T ss_pred chHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC---C-------CCCcHHH-
Confidence 35677799999999999999999999975 567789999999999999999998752 0 1345676
Q ss_pred HhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 018309 291 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 356 (358)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~ 356 (358)
+|.++++++++++++.+|++.|.+++...+|||| ++|+++|+||..|+++.+.
T Consensus 200 ------------im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD-~~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 200 ------------IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD-NEGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred ------------HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc-CCCeEEEEEEHHHHHHHHH
Confidence 6667789999999999999999999999999999 5899999999999998874
No 110
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=1e-11 Score=97.03 Aligned_cols=110 Identities=19% Similarity=0.361 Sum_probs=91.8
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++.++.++.+|++.|.+.+.+.+||+++ +| +++|+++..++++++..... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~~---------- 57 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LDT---------- 57 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------Ccc----------
Confidence 5678899999999999999999999999965 35 79999999999886543211 111
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|++|.+|+++
T Consensus 58 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 58 --PVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred --CHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 233447778999999999999999999999999999998899999999999874
No 111
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.38 E-value=3.5e-12 Score=119.22 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=98.0
Q ss_pred CCCCCCC--ceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccc
Q 018309 129 GRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV 206 (358)
Q Consensus 129 ~~~~~~~--~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v 206 (358)
+++|.++ ++++++++++.+|++.|.+++...+||+|+ +| +++|+++..|+.+++..... ..
T Consensus 200 ~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g---~~iG~vt~~dl~~~~~~~~~--------~~--- 262 (321)
T PRK11543 200 HHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQ---QVQGVFTDGDLRRWLVGGGA--------LT--- 262 (321)
T ss_pred HHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEecHHHHHHHHhCCCC--------cC---
Confidence 3467776 999999999999999999999999999975 45 89999999999875532110 11
Q ss_pred cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 207 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 207 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
..+.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|++|+++
T Consensus 263 ---------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~ 317 (321)
T PRK11543 263 ---------TPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQ 317 (321)
T ss_pred ---------CcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHh
Confidence 1345568888999999999999999999999999999998899999999999986
No 112
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=8.3e-12 Score=97.10 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=89.5
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++.+++++.+|++.|.+++.+.+||+|+ +| +++|+++..++.... ...+
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-------------~~~~--------- 54 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE---KN---KVVGIVTSKDVAGKD-------------PDTT--------- 54 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC---CC---eEEEEecHHHHhccc-------------cccc---------
Confidence 5788999999999999999999999999964 45 899999999986510 0112
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus 55 ---v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 55 ---IEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred ---HHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 33447677889999999999999999999999999998999999999999874
No 113
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.38 E-value=8.1e-12 Score=96.94 Aligned_cols=100 Identities=22% Similarity=0.344 Sum_probs=87.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 301 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~---~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 301 (358)
....+.+++++.++.+.|.+++...+||+|+ +|+++|+++.+|+.....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 3567899999999999999999999999998 6999999999999874421
Q ss_pred ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 302 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 302 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
+|.+++.++++++++.++++.|.+++.+++||++ +|+++|+||+.|++++
T Consensus 56 -~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 56 -YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA 105 (105)
T ss_pred -hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence 1234678999999999999999999999999997 4899999999999864
No 114
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.38 E-value=1.1e-11 Score=97.18 Aligned_cols=111 Identities=19% Similarity=0.351 Sum_probs=92.0
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++.++.++.++++.|.+.+.+.+||+++ +| +++|+++..++.+.+...... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~~---------- 59 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LTL---------- 59 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------ccC----------
Confidence 5667899999999999998888899999975 35 799999999999866532211 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|+++..|++.
T Consensus 60 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 60 --PVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred --CHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 244557778889999999999999999999999999998899999999999874
No 115
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=9.4e-12 Score=99.29 Aligned_cols=123 Identities=21% Similarity=0.345 Sum_probs=94.5
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++..+.++.++.+|++.|.+++.+.+||+++ ++| +++|+++..++.+++........... ... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~~~----~~~----~~~~ 68 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKIKT----GNG----LEAI 68 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccccc----ccc----chhh
Confidence 5678899999999999999999999999965 225 89999999999987753321100000 000 0001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
...+.++|..+++++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 12345567778999999999999999999999999999998899999999999875
No 116
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=8.6e-12 Score=98.08 Aligned_cols=114 Identities=18% Similarity=0.289 Sum_probs=90.2
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
.++++++++++.+|++.|.+++++.+||+|+ +| +++|+++..++.+++....... .. .+ .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~-----~~-----~~----~ 61 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWKLKGLENLD-----LE-----RL----V 61 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHHhhccCchh-----HH-----HH----h
Confidence 4678999999999999999999999999964 45 7999999999998764322110 00 00 0
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
...+.++|..++.++.+++++.++++.|.+++ .+||+|++|+++|++|.+|++.
T Consensus 62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 12344557778999999999999999998865 5999998899999999999875
No 117
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=9.8e-12 Score=98.75 Aligned_cols=120 Identities=20% Similarity=0.415 Sum_probs=94.1
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++.+++++.++++.|.+.+++.+||+++ +| +++|+++..++.+++........ ...... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~------~~~~~~----~~ 65 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNG------EESLTK----ER 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhcccccccc------cccccc----cc
Confidence 5678899999999999999999999999964 35 79999999999986643221100 000000 01
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
...+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|++.
T Consensus 66 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 66 DVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 12345567778999999999999999999999999999998899999999999874
No 118
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.37 E-value=6.2e-12 Score=120.20 Aligned_cols=162 Identities=18% Similarity=0.221 Sum_probs=123.7
Q ss_pred EeeehHHHHHHHHHhccCCCCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhC--
Q 018309 78 GVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-- 155 (358)
Q Consensus 78 Gilt~~Di~~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~-- 155 (358)
.-++..|.++++..+. .+...+.+....-.....+....+ |.++.+|+.|...++++.++.|+.+|+..+++.
T Consensus 89 e~m~~Dd~~~ll~elp---~~~~~~lL~~l~~~~r~~v~~~l~--y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~ 163 (451)
T COG2239 89 EELDIDDAADLLDELP---DEVRDELLSLLDPEERARVRQLLS--YPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAE 163 (451)
T ss_pred HhcCcHHHHHHHHhCC---HHHHHHHHHhCCHHHHHHHHHhcC--CChhhhhccceeeeEEeccCcCHHHHHHHHHHhcc
Confidence 3345555555554432 233334444444444444444444 999999999999999999999999999999854
Q ss_pred ---CcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCCCCceEecCC
Q 018309 156 ---KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPT 232 (358)
Q Consensus 156 ---~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~ 232 (358)
..+.+.|+|. ++ +++|+++.++++. ..... .+.++|.+.++++.++
T Consensus 164 ~~e~~~~lyVvD~---~~---~L~Gvvsl~~Ll~-------------a~~~~------------~i~~im~~~~~~V~~~ 212 (451)
T COG2239 164 DAETIYYLYVVDE---KG---KLLGVVSLRDLLT-------------AEPDE------------LLKDLMEDDVVSVLAD 212 (451)
T ss_pred cccccceEEEECC---cc---ceEEEeeHHHHhc-------------CCcHh------------HHHHHhcccceeeccc
Confidence 4688899976 44 8999999999876 11122 3445588889999999
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 018309 233 ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 275 (358)
Q Consensus 233 ~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~ 275 (358)
+..+++.+.+.+++.-.+||||++++++|++|..|++..+.+.
T Consensus 213 ~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 213 DDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred CCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999977643
No 119
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=1.3e-11 Score=96.68 Aligned_cols=111 Identities=14% Similarity=0.247 Sum_probs=90.3
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++..+.+++++.+|++.|.+.+.+.+||+|+ +| +++|+++..++.+....... +...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~~-------~~~~---------- 58 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESEE-------LKDA---------- 58 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhhh-------hcCC----------
Confidence 3567889999999999999999999999975 35 79999999999874332110 0111
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|+++
T Consensus 59 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 59 --KVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred --cHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 233447778899999999999999999999999999998899999999999864
No 120
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=1.3e-11 Score=97.00 Aligned_cols=110 Identities=19% Similarity=0.314 Sum_probs=86.9
Q ss_pred CceEeCCCCCHHHHHHHHhhCC-cceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 213 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~-~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 213 (358)
++.+++++.++.+|++.|.+++ ...+||+++ | +++|+++..|+++++...... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~-------~~~--------- 58 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK----G---RLLGIFTERDIVRLTAIGKDL-------SDL--------- 58 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC----C---cEEEEEeHHHHHHHHhcCCCc-------ccc---------
Confidence 4567899999999999998888 566777742 4 799999999998855421100 011
Q ss_pred ccccccccCCCCceEecCC--CCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 214 WVPRIGEANGRPFAMLRPT--ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 214 ~~~~v~~~m~~~~~~v~~~--~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|..++.++.++ +++.++++.|.+++...+||+|++|+++|++|++|+++
T Consensus 59 ---~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 59 ---PIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ---CHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 2334477778888877 68999999999999999999998899999999999875
No 121
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.9e-11 Score=94.59 Aligned_cols=104 Identities=19% Similarity=0.366 Sum_probs=88.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 304 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 304 (358)
++.++..++++.++++.|.+.+.+.+||+|++|+++|+++..++..... +.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~-------------~~ 58 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLAL-------------LM 58 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHH-------------Hh
Confidence 4678889999999999999999999999998899999999999975210 123444 44
Q ss_pred CccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 305 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 305 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
..++.++.+++++.++++.|.+++.+.+||+| + |+++|++|..|+++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~G~it~~d~~~ 105 (106)
T cd04638 59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-D-GKLVGIVTVADIVR 105 (106)
T ss_pred cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence 55788999999999999999999999999999 3 79999999999986
No 122
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.36 E-value=1.5e-11 Score=97.33 Aligned_cols=120 Identities=19% Similarity=0.288 Sum_probs=93.6
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.+++++.++.+|++.|.+.+...+||+|+ | +++|+++..++.++......... ..+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~ 65 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR----G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC----C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence 5678899999999999999999999999963 4 79999999999986543211100 000000001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
...+.++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 12355667788999999999999999999999999999998899999999999875
No 123
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=1.4e-11 Score=100.25 Aligned_cols=129 Identities=16% Similarity=0.228 Sum_probs=94.5
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccC-CCCcccc---cccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-SSSLPIL---QQPVSSIQ 210 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~-~~~~~~~---~~~v~~l~ 210 (358)
+++++.+++++.+|++.|.+++.+.+||+|+ +| +++|+++..++++++....... +.....+ ..+.....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY 75 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC---CC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence 4677899999999999999999999999965 45 8999999999998664221110 0000000 00000000
Q ss_pred cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.......++++|.+++..+.+++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 011122466778888999999999999999999999999999986 99999999999875
No 124
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.36 E-value=5.8e-12 Score=117.98 Aligned_cols=116 Identities=17% Similarity=0.191 Sum_probs=95.9
Q ss_pred CCCCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccc
Q 018309 129 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV 206 (358)
Q Consensus 129 ~~~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v 206 (358)
+++|.+ +++++++++++.+|++.|.+++.+.+||+|+ +| +++|++|..|+.+.+.... .+..
T Consensus 205 ~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---~g---~lvGivt~~Dl~~~~~~~~-------~~~~--- 268 (326)
T PRK10892 205 SDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD---NM---KIEGIFTDGDLRRVFDMGI-------DLRQ--- 268 (326)
T ss_pred HHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC---CC---cEEEEEecHHHHHHHhcCC-------Cccc---
Confidence 456776 8999999999999999999988888888864 45 8999999999987432110 0001
Q ss_pred cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 207 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 207 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
..++++|.+++.++.+++++.+|++.|.+++++.+||+| +|+++|++|++|+++
T Consensus 269 ---------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~ 322 (326)
T PRK10892 269 ---------ASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLR 322 (326)
T ss_pred ---------CCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHh
Confidence 235566988999999999999999999999999999997 689999999999987
No 125
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.36 E-value=1.5e-11 Score=95.95 Aligned_cols=109 Identities=20% Similarity=0.383 Sum_probs=90.0
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.+++++.++.+|++.|.+++.+++||+++ | +++|+++..++.+++...... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~~~-------~~~---------- 57 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD----G---RLVGIVTDRDLRNRVVAEGLD-------PDT---------- 57 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHhccCCC-------ccC----------
Confidence 5678899999999999999989999999963 4 799999999998754321100 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|..+++++.+++++.++++.|.+++.+++||+++ |+++|++|.+|+++
T Consensus 58 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 58 --PVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred --CHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 234457778999999999999999999999999999987 99999999999875
No 126
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.2e-11 Score=99.93 Aligned_cols=125 Identities=18% Similarity=0.356 Sum_probs=93.9
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCC--C-cccc--ccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS--S-LPIL--QQPVSSI 209 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~--~-~~~~--~~~v~~l 209 (358)
++.++.+++++.+|++.|.+++++++||+|+ +| +++|+++..++.+++......... . .... +.....+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKL 75 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHH
Confidence 5678999999999999999999999999975 35 799999999999877533211000 0 0000 0000000
Q ss_pred ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
....+.++|.+++..+.+++++.++++.|.+++.+.+||+|+ |+++|++|..|++.
T Consensus 76 ----~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 76 ----LGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred ----cCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 011355667788999999999999999999999999999997 99999999999875
No 127
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.36 E-value=1.7e-11 Score=95.14 Aligned_cols=106 Identities=20% Similarity=0.336 Sum_probs=89.4
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++..+.++.++.++++.|.+++...+||+++ +| +++|+++..|+.+.... ..+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~------------~~~--------- 55 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKE------------AKS--------- 55 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhc------------CCc---------
Confidence 5677899999999999999999999999965 35 79999999999874310 112
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
+.++|...+.++.+++++.++++.|.+++.+++||+|++|+++|++|.+|++.
T Consensus 56 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 56 ---LEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred ---HhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 23346667889999999999999999999999999998899999999999864
No 128
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.35 E-value=2.2e-11 Score=94.83 Aligned_cols=109 Identities=24% Similarity=0.421 Sum_probs=91.0
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++..++++.++.+|++.|.+++.+.+||+++ | +++|+++..++.++...... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~~l~~~~~~~~~--------~~----------- 55 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----G---RPLGIVTERDILRLLASGPD--------LQ----------- 55 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEeHHHHHHHHhcCCC--------CC-----------
Confidence 5678899999999999999888999999963 4 79999999999886532110 01
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
..++++|..+++++.+++++.++++.|.+.+...+||+|++|+++|+++.+|+++
T Consensus 56 -~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 56 -TPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred -cCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 1244457778899999999999999999999999999998899999999999874
No 129
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.2e-11 Score=96.88 Aligned_cols=112 Identities=23% Similarity=0.300 Sum_probs=91.2
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++.++.++.+|++.|.+++.+.+||+++ +| +++|+++..++.+.+....... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~----------- 59 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NG---NLVGFLSEQDCLKQLLESSYHC-----DGV----------- 59 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CC---eEEEEeehHHHHHHhhhhhhcc-----CCC-----------
Confidence 5678899999999999999888899999965 45 7999999999998664322110 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
..+.++|..++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus 60 -~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 60 -ATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred -ccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 1244457777889999999999999999999999999987 99999999999875
No 130
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.35 E-value=1.4e-11 Score=120.69 Aligned_cols=118 Identities=14% Similarity=0.240 Sum_probs=98.1
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 296 (358)
Q Consensus 217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 296 (358)
+++++|.+++.++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+...+..+.... +.++.+
T Consensus 336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~----~~~v~~------- 404 (454)
T TIGR01137 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANP----DDAVSK------- 404 (454)
T ss_pred CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCc----CCCHHH-------
Confidence 577889999999999999999999999999999999998899999999999998554321111 245666
Q ss_pred CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309 297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 355 (358)
Q Consensus 297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~ 355 (358)
+|.+++.++++++++.++++.|.+++ .++|++ +|+++|+||+.||+++|
T Consensus 405 ------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 405 ------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred ------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence 66677889999999999999998764 355652 58999999999999986
No 131
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.35 E-value=2.5e-11 Score=94.52 Aligned_cols=108 Identities=22% Similarity=0.423 Sum_probs=90.0
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++++++++.+|++.|.+++++++||+++ | +++|+++..+++++...... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~~l~~~~~~~~~---------~~---------- 55 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD----G---KLVGIVTLSDIAHAIARGLE---------LA---------- 55 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhcccc---------cc----------
Confidence 5778999999999999999999999999963 4 79999999999885432110 01
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus 56 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 56 --KVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred --CHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 233446678899999999999999999999999999998899999999999874
No 132
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.6e-11 Score=95.91 Aligned_cols=109 Identities=15% Similarity=0.277 Sum_probs=89.9
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++..++++.++.++++.|.+++.+++||+++ .| +++|+++..++..+..... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~---------- 57 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEK---------- 57 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccC----------
Confidence 5678899999999999999999999999975 45 7999999999987432110 0011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|.+++.++.+++++.++++.|.+++...+||+|+ |+++|++|..|++.
T Consensus 58 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 58 --KVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred --cHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 234457778899999999999999999999999999987 99999999999863
No 133
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.35 E-value=1e-11 Score=121.36 Aligned_cols=112 Identities=20% Similarity=0.181 Sum_probs=97.1
Q ss_pred cCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 018309 221 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 297 (358)
Q Consensus 221 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~---g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~ 297 (358)
.|..+++++.+++++.+++++|.+++++.+||+|++ |+++|+++.+|+.... . .+.++.+
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~---~------~~~~V~d-------- 163 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK---D------KSTPVSE-------- 163 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc---c------CCCCHHH--------
Confidence 355678899999999999999999999999999873 8999999999997421 0 1356777
Q ss_pred CCCcccCCc--cceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309 298 NPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 355 (358)
Q Consensus 298 ~~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~ 355 (358)
+|.+ +++++++++++.+|++.|.+++.+.+||+| ++++++|+||+.||++..
T Consensus 164 -----iMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd-~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 164 -----VMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVN-DNGELVALVSRSDLKKNR 217 (495)
T ss_pred -----hhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEehHhhhcc
Confidence 5655 789999999999999999999999999999 589999999999999764
No 134
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.34 E-value=2.4e-11 Score=95.03 Aligned_cols=111 Identities=15% Similarity=0.232 Sum_probs=90.2
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++.++.++.++++.|.+++.+.+||+++ | +++|+++..++++.+...... . ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-----~-~~~---------- 58 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG----N---KLVGIFTSKDIALRVVAQGLD-----P-EST---------- 58 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHHhcCCC-----c-CcC----------
Confidence 5678899999999999999889999999963 4 799999999998644321100 0 012
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|..++.++.+++++.++++.|.+++..++||++++|+++|++|.+|++.
T Consensus 59 --~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 59 --LVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred --CHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 234447778889999999999999999999999999998899999999999864
No 135
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.34 E-value=2.2e-11 Score=94.95 Aligned_cols=109 Identities=16% Similarity=0.238 Sum_probs=88.7
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
+++++.++.++.+|++.|.+++...+||+++ +.| +++|+++..++.++...... ..++
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~-------- 59 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE---------DLDL-------- 59 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC---------cCCH--------
Confidence 4678999999999999999999999999965 115 79999999999986532110 0111
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+++ .++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus 60 ----~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 60 ----RDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred ----HHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 1223 35788999999999999999999999999998899999999999874
No 136
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.34 E-value=2.2e-11 Score=95.25 Aligned_cols=111 Identities=25% Similarity=0.366 Sum_probs=91.8
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
+++++.+++++.++++.|.+.+.+.+||+++ .| +++|+++..++.+++..... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~--------~~----------- 56 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPSL--------YD----------- 56 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhcccc--------cc-----------
Confidence 5678999999999999999999999999975 35 79999999999886532110 01
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~-~g~liGiis~~dl~~ 270 (358)
...+.++|..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++..|++.
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 01344557778999999999999999999999999999987 799999999999874
No 137
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.4e-11 Score=99.87 Aligned_cols=128 Identities=19% Similarity=0.327 Sum_probs=93.9
Q ss_pred CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccc--ccc--c
Q 018309 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP--VSS--I 209 (358)
Q Consensus 134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~--v~~--l 209 (358)
.++.++.++.++.+|++.|.+++.+++||+|+ +| +++|+++..++.++....+.... ..+.... ... .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~---~~~Gvi~~~dl~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 73 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD---DG---RLVGIVSEGDLLRRAELGTERRR--ARWLDLLAGAEELAA 73 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC---CC---CEEEEeeHHHHHHHhcccCcchh--hhHHHHhcchHHHHH
Confidence 36788999999999999999999999999964 45 79999999999875533211000 0000000 000 0
Q ss_pred cc-ccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 210 QL-GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 210 ~i-~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.. ......+.++|..++.++.+++++.++++.|.+++.+.+||+| +|+++|++|+.|+++
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 00 0011235566878899999999999999999999999999999 899999999999874
No 138
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=4.4e-11 Score=93.43 Aligned_cols=110 Identities=17% Similarity=0.352 Sum_probs=88.3
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
.+.++.+++++.+|++.|.+++.+.++|.+ +| +++|+++..++.+++....... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~~------~~~---------- 58 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAGV------LDT---------- 58 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCch------hcC----------
Confidence 467889999999999999888887777764 25 7999999999998664321110 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|..++.++.+++++.++++.|.+++...+||+| +|+++|++|.+|++.
T Consensus 59 --~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 59 --TVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred --CHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 24445777788999999999999999999999999998 599999999999875
No 139
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.32 E-value=3.1e-11 Score=94.83 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=86.7
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++.+++++.+|++.|.+++...+||+|+...+| +++|+++..++...- . ...
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-----~-------~~~---------- 57 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-----D-------SET---------- 57 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-----c-------cCC----------
Confidence 467888999999999999988999999996421135 899999999986410 0 011
Q ss_pred cccccccCCCCceEecC--CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRP--TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~--~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|.....++.. ++++.++++.|.+++...+||+|++|+++|++|.+|++.
T Consensus 58 --~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 58 --PLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred --CHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 133446666667755 999999999999999999999998899999999999874
No 140
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.32 E-value=4.7e-11 Score=93.93 Aligned_cols=111 Identities=26% Similarity=0.484 Sum_probs=94.8
Q ss_pred CCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccc
Q 018309 132 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 211 (358)
Q Consensus 132 ~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i 211 (358)
+...++++.++.++.+|+..|.++++.++|+.+. + +++|++|.+|+.+++........
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~~--------------- 62 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRLL--------------- 62 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCccc---------------
Confidence 4578899999999999999999999999999964 2 69999999999997764432210
Q ss_pred ccccccccccCCCCceEecCCCCHHHHHHHHHh-CCCCEEEEEcCCC-cEEEEEeHHHHH
Q 018309 212 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQ-ADVSSIPIVDDND-SLLDIYSRSDIT 269 (358)
Q Consensus 212 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-~~~~~vpVvd~~g-~liGiis~~dl~ 269 (358)
.+.++|..++.++.+++++.++.+.|.+ ++++.+||+|+++ +++|++|.+|++
T Consensus 63 -----~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 -----PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred -----cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 2445577789999999999999999999 7999999999886 999999999973
No 141
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2.6e-11 Score=96.30 Aligned_cols=120 Identities=22% Similarity=0.402 Sum_probs=92.2
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++.+++++.++++.|.+++.+.+||+|+ +| +++|+++..++++......... ..... ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~-------~~~~~---~~~~ 65 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK---AG---ELIGIITRRDIIRAGSVRTSVE-------DQQRT---QTKA 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEcHHHHhhcccccccc-------chhhh---hhhc
Confidence 5678999999999999999999999999964 45 8999999999987421110000 00000 0001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
...+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 12345567778899999999999999999999999999998899999999999874
No 142
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=5.5e-11 Score=92.62 Aligned_cols=107 Identities=19% Similarity=0.399 Sum_probs=89.5
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.+++++.++.+|.+.|.+++..++||+|+ | +++|+++..++.+.+.... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~dl~~~~~~~~---------~~~---------- 56 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG----G---RVVGIISRRDVEKALRHGL---------GHA---------- 56 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC----C---EEEEEEEHHHHHHHHhccc---------ccC----------
Confidence 6788999999999999999888999999963 4 7999999999987542110 112
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|..++.++.+++++.++++.|.+++.+.+||+| +|+++|++|..|++.
T Consensus 57 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 57 --PVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred --cHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 23344777889999999999999999999999999998 799999999999874
No 143
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=3.2e-11 Score=96.61 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=86.1
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHh-hcccCCCCccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR-HFKHSSSSLPILQQPVSSIQLGT 213 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~-~~~~~~~~~~~~~~~v~~l~i~~ 213 (358)
++.++.+++++.+|++.|.+++.+.+||+|+ .| +++|+++..|+.+.... ...... ......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~--~~~~~~--------- 64 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQEGG--ISRSEL--------- 64 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHHcC--CCchhe---------
Confidence 4678999999999999999899999999975 45 79999999999862110 000000 000111
Q ss_pred ccccccccCCCCceEe------cCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 018309 214 WVPRIGEANGRPFAML------RPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA 270 (358)
Q Consensus 214 ~~~~v~~~m~~~~~~v------~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~ 270 (358)
.++++|.+++..+ .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus 65 ---~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 65 ---TVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ---EHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 2444576554333 368899999999999999999999987 89999999999875
No 144
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=5.3e-11 Score=91.76 Aligned_cols=102 Identities=19% Similarity=0.394 Sum_probs=86.6
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++..+.+++++.++++.|.+++.+.+||+|+ | +++|+++..++.+.. ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~Giv~~~~l~~~~-------------~~~---------- 51 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED----G---KLVGIITSRDVRRAH-------------PNR---------- 51 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEehHHhhccc-------------ccC----------
Confidence 5677899999999999999899999999953 4 799999999997610 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT 269 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~ 269 (358)
.+.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|++|.+|++
T Consensus 52 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 52 --LVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred --CHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 133447778899999999999999999999999999987 9999999999986
No 145
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=8.2e-11 Score=91.88 Aligned_cols=110 Identities=21% Similarity=0.396 Sum_probs=89.4
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++.++.++.++++.|.+.+.+.+||+++ + +++|+++..++.+++....... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~~------~~~---------- 58 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLKP------REV---------- 58 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCCc------ccC----------
Confidence 5678899999999999999989999999974 3 6999999999998654221000 111
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|.+++.++.+++++.++++.|.+++...+||+|++ +++|+++.+|++.
T Consensus 59 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 59 --PVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred --CHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 2344577788899999999999999999999999999865 9999999999874
No 146
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=5.7e-11 Score=95.30 Aligned_cols=124 Identities=15% Similarity=0.269 Sum_probs=92.2
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++..+.++.++.+|++.|.+.+.+.+||+++ .| +++|+++..++..++........ ........ ....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~-----~~~~~~~~-~~~~ 69 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKAR-----TGDRSGEK-ERML 69 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcc-----hhhhhhhh-hhhc
Confidence 4678899999999999999999999999975 35 79999999999876533211000 00000000 0001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd--~~g~liGiis~~dl~~ 270 (358)
...+.++|..+++++.+++++.++++.|.+.+...+||++ ++|+++|+||.+|++.
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 1234566888899999999999999999999999999984 4699999999999874
No 147
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=6.7e-11 Score=93.95 Aligned_cols=120 Identities=23% Similarity=0.321 Sum_probs=94.5
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.+++++.++.+|++.|.+++++++||+|+ | +++|+++..++.+.+........ ....+. ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~~--~~~ 65 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED----N---ELVGVISDRDYLKAISPFLGTAG-------ETEKDL--ATL 65 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC----C---eEEEEEEHHHHHHHHHHHhcccc-------chHHHH--HHH
Confidence 5678999999999999999999999999963 4 79999999999886654322100 000000 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
...+.++|..+++++.+++++.++++.|.+++...+||+|++|+++|+++..|++.
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 12355667788999999999999999999999999999998899999999999875
No 148
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=7.5e-11 Score=92.20 Aligned_cols=110 Identities=20% Similarity=0.376 Sum_probs=89.3
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHH-HHHhhcccCCCCccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSIQLGT 213 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~-~l~~~~~~~~~~~~~~~~~v~~l~i~~ 213 (358)
++.++.+++++.+|++.|.+++.+.+||+++ | +++|+++..+++. .+.... . ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~i~~~~l~~~~~~~~~-~-------~~~--------- 57 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN----D---RLVGIVTDRDIVVRAVAEGR-D-------PDT--------- 57 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEhHHHHHHHhhccC-C-------ccc---------
Confidence 5678999999999999999999999999963 4 7999999999873 221110 0 000
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
..+.++|...+.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+++
T Consensus 58 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 58 --TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred --CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1244557778889999999999999999999999999998899999999999875
No 149
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=5.7e-11 Score=94.17 Aligned_cols=119 Identities=19% Similarity=0.426 Sum_probs=92.5
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++..+.+++++.++++.|.+++.+.+||+++ | +++|+++..++.+.+........ ......+...
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~------ 66 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG----G---KLVGIVTEKDIADALRSFRPLVR--DRHQERRIRN------ 66 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC----C---EEEEEEchHHHHHhhhhhhhccc--chhhhhhhhc------
Confidence 5678999999999999999999999999963 5 89999999999886543221100 0000011111
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
..+.++|..++.++.+++++.++++.|.+.+.+.+||+|+ |+++|++|.+|++.
T Consensus 67 -~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 67 -LPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred -cCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 1344557778999999999999999999999999999987 99999999999874
No 150
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.28 E-value=4.8e-11 Score=92.74 Aligned_cols=106 Identities=19% Similarity=0.312 Sum_probs=86.3
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++..+.++.++.++++.|.+++...+||+|+ .| +++|+++..++.+.. . ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-----~-------~~~---------- 54 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFET-----D-------LDK---------- 54 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeecc-----c-------CCC----------
Confidence 5678899999999999999999999999965 35 899999999885410 0 111
Q ss_pred cccccccCCCCceEecC-CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRP-TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~-~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|...+..+.+ ++++.++++.|.+.+.+.+||+|++|+++|++|.+|++.
T Consensus 55 --~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 55 --PVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred --CHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 233446655666666 999999999999999999999998899999999999874
No 151
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.28 E-value=9.5e-11 Score=91.24 Aligned_cols=109 Identities=23% Similarity=0.376 Sum_probs=90.3
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
+++.+.+++++.++++.|.+.+.+.+||+++ | +++|+++..|+.+....... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~---------~----~------ 55 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD----G---RLVGIVTLADIRRVPAEGRE---------A----T------ 55 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC----C---eEEEEEEHHHHHHHHhcCcc---------c----c------
Confidence 5778999999999999999888999999963 4 79999999999874421110 0 0
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
..+.++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 56 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 -VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred -cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 1233447778999999999999999999999999999998899999999999875
No 152
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.28 E-value=5.8e-11 Score=116.22 Aligned_cols=115 Identities=14% Similarity=0.185 Sum_probs=96.5
Q ss_pred CCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccc
Q 018309 132 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 211 (358)
Q Consensus 132 ~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i 211 (358)
|.++++++++++++.+|++.|.+++++.+||+|+...+| +++|++|..|+... .....
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v------------~~~~~------- 163 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFV------------NDRET------- 163 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhc------------cccCC-------
Confidence 668899999999999999999999999999997421135 89999999998641 00122
Q ss_pred ccccccccccCCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309 212 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 273 (358)
Q Consensus 212 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~ 273 (358)
.+.++|+++ ++++.+++++.+|++.|.+++...+||+|++++++|+||++|+++...
T Consensus 164 -----~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 164 -----KLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred -----cHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 344558766 789999999999999999999999999999999999999999998664
No 153
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.28 E-value=2.4e-11 Score=115.62 Aligned_cols=120 Identities=18% Similarity=0.310 Sum_probs=104.0
Q ss_pred CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309 129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 208 (358)
Q Consensus 129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~ 208 (358)
+.++..|.+++++.+|+.+|...|.++|++++.+++. ++ ...||+|.+|+.+.+......
T Consensus 152 ~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~-------------- 211 (610)
T COG2905 152 GEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS-------------- 211 (610)
T ss_pred HHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC--------------
Confidence 4577889999999999999999999999998888864 44 789999999999877643322
Q ss_pred cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309 209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 274 (358)
Q Consensus 209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~ 274 (358)
...+|+++|+.+++++..++.+.+|+-+|.+++++++||++ +|+++|++|..||+.+...
T Consensus 212 -----~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 212 -----KTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred -----cccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 11356777999999999999999999999999999999995 7999999999999997763
No 154
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=4.9e-11 Score=92.85 Aligned_cols=102 Identities=16% Similarity=0.252 Sum_probs=84.0
Q ss_pred eCCCCCHHHHHHHHhhCC-----cceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309 139 AGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 213 (358)
Q Consensus 139 v~~~~sl~~al~~m~~~~-----~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 213 (358)
+.+++++.++++.|.+++ +..+||+|+ +| +++|+++.+++.+. . ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~------------~-~~~--------- 53 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA------------D-PDT--------- 53 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC------------C-Ccc---------
Confidence 568899999999998777 478999964 35 79999999988650 0 011
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 018309 214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 271 (358)
Q Consensus 214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~ 271 (358)
.+++++..++.++.+++++.++++.|.+++...+||+|++|+++|++|..|+++.
T Consensus 54 ---~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 54 ---PVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred ---hHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 2344477778999999999999999999999999999988999999999999864
No 155
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.27 E-value=9.9e-11 Score=107.31 Aligned_cols=120 Identities=11% Similarity=0.097 Sum_probs=96.4
Q ss_pred CCCCCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccc
Q 018309 128 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 205 (358)
Q Consensus 128 ~~~~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~ 205 (358)
++.+|.+ .++++++++++.++++.+.+++.+++||+++ +.+ +++|+++.+|++.+..... ...+
T Consensus 69 V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~--~~d---~iiGiv~~kDll~~~~~~~---------~~~~ 134 (292)
T PRK15094 69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDA---------EAFS 134 (292)
T ss_pred EeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC--CCC---cEEEEEEHHHHHhHhhccC---------CcCC
Confidence 3457776 6999999999999999999999999999964 223 7999999999987442100 0011
Q ss_pred ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309 206 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 274 (358)
Q Consensus 206 v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~ 274 (358)
+.++|.+ +.++++++++.++++.|.+++.+.+||+|+.|.++|+||..|++..+..
T Consensus 135 ------------l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 135 ------------MDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG 190 (292)
T ss_pred ------------HHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhC
Confidence 2233554 5589999999999999999999999999998999999999999996654
No 156
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.27 E-value=1.2e-10 Score=90.77 Aligned_cols=109 Identities=14% Similarity=0.235 Sum_probs=88.6
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
+++.++++.++.+|++.|.+++...+||+|+ | +++|+++..++.+.+..... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~-------~~~----------- 56 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG----D---PRLGIVTRTDLLDAVLLDGL-------PSS----------- 56 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC----C---eEEEEEEHHHHHHHHHcCCC-------CCC-----------
Confidence 4577899999999999999988899999963 4 69999999999875432100 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
..+.++|..++..+.+++++.++++.|.+++...+||+|+ |+++|++|..|++.
T Consensus 57 -~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 57 -TPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred -CCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 1234457778899999999999999999999999999985 89999999999874
No 157
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.27 E-value=1.5e-10 Score=89.63 Aligned_cols=111 Identities=23% Similarity=0.457 Sum_probs=91.5
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++..++++.++.++++.|.+++.+.+||+++ ++ +++|+++..++.+++........ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~-------~---------- 58 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPL-------V---------- 58 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCcc-------c----------
Confidence 4677899999999999999988999999965 34 79999999999987754332110 0
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus 59 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 59 --TVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred --cHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 022336667888999999999999999999999999999999999999999874
No 158
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.27 E-value=7.2e-11 Score=95.75 Aligned_cols=109 Identities=21% Similarity=0.304 Sum_probs=80.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccccc-------ccccHHHHHhcCCCC
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHL-------DEMNIHQALQLGQDA 297 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~-------~~~~v~~~l~~~~~~ 297 (358)
++.++.+++++.+|++.|.+++.+++||+|++|+++|++|..|+++............ ....+.++....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--- 78 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKG--- 78 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhh---
Confidence 4778999999999999999999999999999999999999999998664322111000 001122211100
Q ss_pred CCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeC
Q 018309 298 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 337 (358)
Q Consensus 298 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~ 337 (358)
.-.+.|..+++++++++++.+|++.|.+++++++||+|+
T Consensus 79 -~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 79 -ISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred -hhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 000124567899999999999999999999999999995
No 159
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.26 E-value=5.3e-11 Score=116.29 Aligned_cols=109 Identities=17% Similarity=0.232 Sum_probs=91.2
Q ss_pred eEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccc
Q 018309 137 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 216 (358)
Q Consensus 137 v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~ 216 (358)
.++++++++.+|++.|.+++.+.+||+|+..++| +++|++|..|+.+. . ...+.
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~------~~~~~------------ 161 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----R------MSLDT------------ 161 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----c------cCCCC------------
Confidence 6899999999999999999999999997422245 89999999998541 0 01122
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 018309 217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 271 (358)
Q Consensus 217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~ 271 (358)
.+.++|++ +++++.+++++.+|++.|.++++..+||+|++|+++|+||.+|+++.
T Consensus 162 ~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 162 KVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred CHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 34555875 78899999999999999999999999999999999999999999984
No 160
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.26 E-value=9.5e-11 Score=91.00 Aligned_cols=108 Identities=19% Similarity=0.383 Sum_probs=86.8
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++.+++++.+|++.|.+++.+.+||+++ | +++|+++..++.+++...... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-------~~~---------- 57 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD----G---RVVGSIDESDLLDALIEGKAK-------FSL---------- 57 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC----C---eeEEEEeHHHHHHHHhccccc-------cCc----------
Confidence 5678899999999999999999999999963 4 799999999999865432111 011
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.+.++|.+++.++++++++.++.++|.+ . ..+||++++|+++|++|.+|++.
T Consensus 58 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 58 --PVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred --CHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 2334477778899999999999999988 3 34789988899999999999875
No 161
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=1.4e-10 Score=89.79 Aligned_cols=105 Identities=20% Similarity=0.431 Sum_probs=88.2
Q ss_pred CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 213 (358)
Q Consensus 134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 213 (358)
++++++..+.++.++++.|.+++...+||+++ | +++|+++..+++.. . ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~---~~~g~v~~~~l~~~------~-------~~~--------- 52 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN----G---KVVGIVSARDLLGK------D-------PDE--------- 52 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC----C---EEEEEEEHHHhhcc------C-------ccc---------
Confidence 35778999999999999998888889999963 4 79999999998751 0 011
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.++++|...+.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|++.
T Consensus 53 ---~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 53 ---TVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred ---cHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 234457777889999999999999999999999999999999999999999874
No 162
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.24 E-value=6e-11 Score=119.27 Aligned_cols=119 Identities=16% Similarity=0.259 Sum_probs=98.3
Q ss_pred CCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccc
Q 018309 130 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 209 (358)
Q Consensus 130 ~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l 209 (358)
++|.+++.++++++++.++++.|.+++.+.+||+|+ +| +++|+++.+|+.+.+...... ..
T Consensus 451 dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~~-------~~------ 511 (574)
T PRK01862 451 ELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRDT-------TD------ 511 (574)
T ss_pred HHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhccccc-------cc------
Confidence 367888899999999999999999999999999975 45 899999999998744321100 01
Q ss_pred ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHHHHh
Q 018309 210 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAK 273 (358)
Q Consensus 210 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~--g~liGiis~~dl~~~~~ 273 (358)
..+.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|++|++|+++.+.
T Consensus 512 ------~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 512 ------KTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred ------chHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 13445588889999999999999999999999999999876 58999999999998654
No 163
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.24 E-value=1.8e-10 Score=89.00 Aligned_cols=100 Identities=18% Similarity=0.289 Sum_probs=84.5
Q ss_pred eEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccc
Q 018309 137 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 216 (358)
Q Consensus 137 v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~ 216 (358)
+++.++.++.+|++.|.+.+.+.+||+|+ | +++|+++..++.+.. ..+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~--------------~~~----------- 51 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY----N---KFLGAVYLKDIENAT--------------YGD----------- 51 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHHhhhc--------------ccc-----------
Confidence 56789999999999999999999999963 4 799999999987621 011
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
+.++|...+.++.+++++.++++.|.+++...+||+| +|+++|++|.+|++.
T Consensus 52 -~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 52 -VVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred -hhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 2233666788999999999999999999999999998 699999999999874
No 164
>PRK11573 hypothetical protein; Provisional
Probab=99.23 E-value=1.9e-10 Score=110.46 Aligned_cols=122 Identities=13% Similarity=0.235 Sum_probs=100.3
Q ss_pred cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309 217 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 293 (358)
Q Consensus 217 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~ 293 (358)
+++++|.+ ++.+++.++++.++++.+.+++++++||.+++ ++++|++..+|++....++. .........
T Consensus 188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-------~~~~~~l~~- 259 (413)
T PRK11573 188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-------EFTKENMLR- 259 (413)
T ss_pred ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-------cCCHHHHHh-
Confidence 56777864 58999999999999999999999999998764 78999999999987543211 111222111
Q ss_pred CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309 294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357 (358)
Q Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~ 357 (358)
++ +++.+++++.++.++++.|.+++.|-..|+| +.|...|+||+.||++.++|
T Consensus 260 ---------~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivG 312 (413)
T PRK11573 260 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhC
Confidence 22 4788999999999999999999999999999 58999999999999999886
No 165
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.22 E-value=2e-10 Score=90.97 Aligned_cols=119 Identities=16% Similarity=0.292 Sum_probs=91.5
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++++++++.+|++.|.+.+.+.+||+|+ +| +++|+++..++.+.......... .... ....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---------~~~~-~~~~ 65 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLS---------EHEL-YLLL 65 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccch---------hhhh-hhhc
Confidence 5678899999999999999899999999975 35 79999999999875432211100 0000 0001
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
...+.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|++|.+|+++
T Consensus 66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 12344557778899999999999999999999999999986 99999999999874
No 166
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.22 E-value=1.3e-10 Score=113.07 Aligned_cols=165 Identities=16% Similarity=0.220 Sum_probs=117.5
Q ss_pred CCeeeceeCCCCeEEEeeehHHHHHHHHHhccCC---CCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEe
Q 018309 63 LPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQA 139 (358)
Q Consensus 63 i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v 139 (358)
-..+|++.+. ..-+|..++...+......+ .++..++ +...+.+.+. . +..+.++++++
T Consensus 32 ~l~~p~~s~~----mdtvTe~ema~~ma~~gg~GvI~~n~~~e~-------q~~~V~~Vk~---~----~~~~~~~~vtl 93 (450)
T TIGR01302 32 KLNIPILSSP----MDTVTESRMAIAMAREGGIGVIHRNMSIEE-------QAEQVKRVKR---A----ENGIISDPVTI 93 (450)
T ss_pred CcCCCeeecC----CCccCHHHHHHHHHhcCCCceeecCCCHHH-------HHHHHhhhcc---c----cCceecCceEe
Confidence 3567888543 23458888887776543321 1221111 1111111111 1 12466789999
Q ss_pred CCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccccccccc
Q 018309 140 GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIG 219 (358)
Q Consensus 140 ~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~ 219 (358)
+++.++.+|++.|.+++++++||+|++...+ +++|+++.+|+.... . ... .+.
T Consensus 94 ~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~------------~V~ 146 (450)
T TIGR01302 94 SPETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGK------------PVS 146 (450)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCC------------CHH
Confidence 9999999999999999999999997521114 799999999996410 0 112 244
Q ss_pred ccCC-CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309 220 EANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 272 (358)
Q Consensus 220 ~~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~ 272 (358)
++|. .+++++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++...
T Consensus 147 dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 147 EVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred HhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 4577 4899999999999999999999999999999999999999999999864
No 167
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.22 E-value=1.3e-10 Score=113.76 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=95.7
Q ss_pred CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309 131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 210 (358)
Q Consensus 131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~ 210 (358)
.+..+++++++++++.+|+++|.+++++.+||++++..+| +++|+++.+|+.. . .....
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~-----------~~~~~------ 159 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-V-----------KDKST------ 159 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-c-----------ccCCC------
Confidence 3566788999999999999999999999999997522235 8999999999863 1 00112
Q ss_pred cccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309 211 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 272 (358)
Q Consensus 211 i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~ 272 (358)
.+.++|++ +++++.+++++.+++++|.+++...+||+|++++++|+||++|+++..
T Consensus 160 ------~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 160 ------PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred ------CHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 34455876 789999999999999999999999999999999999999999999753
No 168
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.21 E-value=2.3e-10 Score=109.93 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=113.2
Q ss_pred CCCCCC--CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccc
Q 018309 129 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV 206 (358)
Q Consensus 129 ~~~~~~--~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v 206 (358)
..+|.+ .+++++.++++.++++.+.+++++++||++++ .+ +++|+++.+|++.++.. . ..+
T Consensus 194 ~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~--~d---~ivGiv~~kDll~~~~~---~--------~~~- 256 (408)
T TIGR03520 194 KQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET--ID---NITGVLYIKDLLPHLNK---K--------NFD- 256 (408)
T ss_pred eeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC--CC---ceEEEEEHHHHHhHhcc---C--------CCC-
Confidence 446765 78999999999999999999999999999642 22 79999999999874321 0 011
Q ss_pred cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccccccccc
Q 018309 207 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMN 286 (358)
Q Consensus 207 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~ 286 (358)
+.++|. ++.++++++++.++++.|.+++.+..+|+|+.|.++|+||.+|++..+-...+... + .
T Consensus 257 -----------l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~---d-~ 320 (408)
T TIGR03520 257 -----------WQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEF---D-D 320 (408)
T ss_pred -----------HHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcC---C-c
Confidence 122344 57899999999999999999999999999999999999999999996643322111 0 0
Q ss_pred HHHHHhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhc
Q 018309 287 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLAN 326 (358)
Q Consensus 287 v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~ 326 (358)
-.+ ...-.....+.++...++.+..+.|--
T Consensus 321 ~~~----------~i~~~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 321 EDL----------IYSKIDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred Ccc----------ceEEeCCCeEEEEeccCHHHHHHHhCC
Confidence 000 000112345677888888888877743
No 169
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=3.7e-10 Score=92.65 Aligned_cols=126 Identities=25% Similarity=0.469 Sum_probs=96.1
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhccc----CCCCcccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH----SSSSLPILQQPVSSIQ 210 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~----~~~~~~~~~~~v~~l~ 210 (358)
+++++++++++.++++.|.+++.+.+||+|+ | +++|+++..++.+++...... .++.......++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG----G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF- 73 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC----C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence 5678999999999999999999999999963 4 799999999999877543211 011111122222221
Q ss_pred cccc-----------cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 211 LGTW-----------VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 211 i~~~-----------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
..| ...+.++|..++.++.+++++.++++.|.+++.+.+||+++ |+++|+++.+|++.
T Consensus 74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 111 12456678888999999999999999999999999999987 99999999999864
No 170
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.19 E-value=1.4e-10 Score=105.62 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=91.3
Q ss_pred CCCCCCC-ceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccc
Q 018309 129 GRPCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 207 (358)
Q Consensus 129 ~~~~~~~-~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~ 207 (358)
+++|.++ +.++.+++++.+|++.|.+.+.+.+||+|+ +| +++|+++..|+.+++.... ....
T Consensus 158 ~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~~--------~~~~--- 220 (268)
T TIGR00393 158 KDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGGG--------SLKS--- 220 (268)
T ss_pred HHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcCC--------cccC---
Confidence 3467777 899999999999999999999999999975 45 7999999999988543110 0112
Q ss_pred ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEe
Q 018309 208 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 264 (358)
Q Consensus 208 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis 264 (358)
.+.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus 221 ---------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 221 ---------EVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ---------cHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 244558888999999999999999999999999999998899999985
No 171
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.13 E-value=1.3e-09 Score=84.46 Aligned_cols=101 Identities=15% Similarity=0.188 Sum_probs=85.0
Q ss_pred ceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccccc
Q 018309 136 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 215 (358)
Q Consensus 136 ~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 215 (358)
...+.++.++.++.+.+.+++...+||+++...+| +++|+++..++.+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---~~~G~v~~~dl~~~~~~------------------------- 55 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP---RLVGYILRSQLVVALKN------------------------- 55 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC---EEEEEEeHHHHHHHHHH-------------------------
Confidence 46778999999999999998888999996311035 79999999999874321
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
+|..++.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|+.+
T Consensus 56 -----~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 -----YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred -----hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 2556788999999999999999999999999995 789999999999875
No 172
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.10 E-value=1.1e-09 Score=106.04 Aligned_cols=120 Identities=18% Similarity=0.326 Sum_probs=99.4
Q ss_pred cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 018309 217 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 293 (358)
Q Consensus 217 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd-~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~ 293 (358)
.++++|+ .++.+++.++++.++.+.+.+++++++||.+ +.+.++|++..+|++.....+.. .. ....
T Consensus 207 ~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~~-----~~~~---- 276 (429)
T COG1253 207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-DL-----DLRV---- 276 (429)
T ss_pred EeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-cc-----chhh----
Confidence 3445565 4688999999999999999999999999999 45799999999999986654321 11 1111
Q ss_pred CCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309 294 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357 (358)
Q Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~ 357 (358)
.. .+++.+++++++.+++++|.+++.|-..|+| +.|...|+||+.||++.++|
T Consensus 277 ---------~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 277 ---------LV-RPPLFVPETLSLSDLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred ---------cc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhC
Confidence 11 2789999999999999999999999999999 58999999999999999986
No 173
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.10 E-value=1.1e-09 Score=86.31 Aligned_cols=113 Identities=12% Similarity=0.193 Sum_probs=87.7
Q ss_pred CceEeCCCCCHHHHHHHHhhCC-cceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 213 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~-~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 213 (358)
++.++++++++.+|++.|...+ .+.+||+|+ | +++|+++..++.+++...... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~~l~~~~~~~~~~-----~~~----------- 58 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD----G---RPVGLIMREALMELLSTPYGR-----ALY----------- 58 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC----C---eeEEEEEHHHHHHHHhchhhH-----HHH-----------
Confidence 4667889999999999998877 889999963 4 799999999998754321100 000
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCC---EEEEEcCCCcEEEEEeHHHHHH
Q 018309 214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVS---SIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~---~vpVvd~~g~liGiis~~dl~~ 270 (358)
....++++|..++.++.+++++.++++.|.+++.. ..||++++|+++|++|..|++.
T Consensus 59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 01135556888899999999999999999988753 4468888899999999999874
No 174
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.09 E-value=2.3e-09 Score=82.88 Aligned_cols=104 Identities=22% Similarity=0.359 Sum_probs=85.3
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
++.++.++.++.+++..|.+.+.+.+||+++ .| +++|+++..++.+. . ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~----~---------~~~~--------- 53 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRN----P---------EEEQ--------- 53 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhc----c---------ccch---------
Confidence 4678889999999999999888899999964 34 79999999998751 0 0111
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
+.++|..++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|..|++.
T Consensus 54 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 54 ---LALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred ---HHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 22336667889999999999999999999999999984 79999999999874
No 175
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.07 E-value=1.6e-09 Score=87.78 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=79.4
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCc-ccccc---cccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL-PILQQ---PVSSIQ 210 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~-~~~~~---~v~~l~ 210 (358)
.+.++.+++++.+|++.|.+++.+.+||+|+ +| +++|+++..|+++++........... ..... .+.++.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 75 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC 75 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence 5788999999999999999999999999975 45 89999999999997754321100000 00000 000110
Q ss_pred cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC
Q 018309 211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN 256 (358)
Q Consensus 211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~ 256 (358)
....+.+.|..+++++.+++++.+|++.|.+++++++||+|++
T Consensus 76 ---~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 76 ---TKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred ---hhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 0001122345678999999999999999999999999999864
No 176
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.07 E-value=9.8e-10 Score=98.99 Aligned_cols=109 Identities=16% Similarity=0.293 Sum_probs=94.5
Q ss_pred CCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309 134 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 213 (358)
Q Consensus 134 ~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 213 (358)
.....+.+++++.+..++-.+.+.+|.||+|+ .. +++|++|.+|+.. .. -..+
T Consensus 198 ~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~-------~~------~~t~-------- 250 (432)
T COG4109 198 EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLD-------KK------PSTT-------- 250 (432)
T ss_pred ccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhc-------CC------CCcc--------
Confidence 56778889999999999999999999999976 33 8999999999876 11 1223
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309 214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 273 (358)
Q Consensus 214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~ 273 (358)
+..+|+++++++.+.+++..+.++|.-.++.-+||+|++.+++|++|++|+++.+.
T Consensus 251 ----ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 251 ----IEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred ----HHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 33349999999999999999999999999999999999999999999999998664
No 177
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.06 E-value=1.4e-09 Score=106.63 Aligned_cols=116 Identities=12% Similarity=0.226 Sum_probs=92.6
Q ss_pred CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccc
Q 018309 129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 208 (358)
Q Consensus 129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~ 208 (358)
+.+|.+++.++.+++++.++++.|.+++.+.+||+|+ +| +++|+++..|+.+.+...... ...
T Consensus 338 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~-------~~~---- 400 (454)
T TIGR01137 338 KDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKAN-------PDD---- 400 (454)
T ss_pred HHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCCC-------cCC----
Confidence 4478889999999999999999999999999999974 35 799999999998865431110 111
Q ss_pred cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309 209 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 272 (358)
Q Consensus 209 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~ 272 (358)
.+.++|.+++.++.+++++.++++.|.+++ .|+|+++|+++|+||.+|++..+
T Consensus 401 --------~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 401 --------AVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred --------CHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 244557778889999999999999998864 35565679999999999999854
No 178
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.04 E-value=6.6e-10 Score=75.92 Aligned_cols=54 Identities=31% Similarity=0.532 Sum_probs=50.9
Q ss_pred cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309 219 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 272 (358)
Q Consensus 219 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~ 272 (358)
+++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++.+
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 466888999999999999999999999999999999999999999999999865
No 179
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.02 E-value=1.7e-09 Score=103.60 Aligned_cols=116 Identities=17% Similarity=0.286 Sum_probs=102.0
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHh-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 018309 216 PRIGEANGRPFAMLRPTASLGSALALLVQ-----ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 290 (358)
Q Consensus 216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-----~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~ 290 (358)
.+++.+|+..++++.++.|+.+++..+++ ..+..+.|+|+++++.|+++.++++..-. +..+.+
T Consensus 132 ~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~- 200 (451)
T COG2239 132 DTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKD- 200 (451)
T ss_pred hhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHH-
Confidence 46788899999999999999999999984 35788999999999999999999985211 345566
Q ss_pred HhcCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309 291 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 355 (358)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~ 355 (358)
+|.+.++++.+++...++.+.+.+++.-.+|||| ++++++|+||..|++..+
T Consensus 201 ------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi 252 (451)
T COG2239 201 ------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVI 252 (451)
T ss_pred ------------HhcccceeecccCCHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHH
Confidence 7777899999999999999999999999999999 589999999999998765
No 180
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.99 E-value=1.6e-09 Score=73.94 Aligned_cols=54 Identities=28% Similarity=0.409 Sum_probs=50.7
Q ss_pred cCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309 303 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357 (358)
Q Consensus 303 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~ 357 (358)
+|.++++++++++++.++++.|.+++.+++||+| ++|+++|+||.+||+++++.
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d-~~~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD-EDGKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES-TTSBEEEEEEHHHHHHHHHG
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHhhhhC
Confidence 6778999999999999999999999999999999 47999999999999999863
No 181
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.85 E-value=2.1e-07 Score=87.91 Aligned_cols=111 Identities=16% Similarity=0.238 Sum_probs=92.0
Q ss_pred CCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcc
Q 018309 223 GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 302 (358)
Q Consensus 223 ~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~ 302 (358)
........++.+..++++.|...+...+.|+|+++++.|.++..++....... ..+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~------------- 306 (363)
T TIGR01186 249 NTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQD------------- 306 (363)
T ss_pred cccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhh-------------
Confidence 33444566777899999999999999999999999999999999988754322 23344
Q ss_pred cCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309 303 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357 (358)
Q Consensus 303 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~ 357 (358)
.+.....++++++++.+++..|.+++.. +||+| ++|+++|+||..++++++.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 307 VLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD-EDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred hhccCCceECCCCcHHHHHHHHHhCCCC-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence 2334577899999999999999999998 99999 58999999999999999864
No 182
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.80 E-value=3.8e-08 Score=89.76 Aligned_cols=121 Identities=14% Similarity=0.303 Sum_probs=101.7
Q ss_pred cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhccc-ccccccccccHHHHHh
Q 018309 217 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQ 292 (358)
Q Consensus 217 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-g~liGiis~~dl~~~~~~~~-~~~l~~~~~~v~~~l~ 292 (358)
+|.|+|. .++..+..+++.+++.+.+.+....++|+-.++ ++++|++..+|+++++.++. +.+ ..+..++
T Consensus 201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k-----~d~~~~a- 274 (423)
T COG4536 201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTK-----EDILRAA- 274 (423)
T ss_pred eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccH-----hHHHHHh-
Confidence 5677785 458899999999999999999999999998643 57999999999999887654 222 2222222
Q ss_pred cCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309 293 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357 (358)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~ 357 (358)
.+++++++++++.+-+..|..++-|--.||| +.|.+.|+||+.||++.++|
T Consensus 275 -------------~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 275 -------------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred -------------cCCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhc
Confidence 3689999999999999999999999999999 59999999999999999886
No 183
>PRK11573 hypothetical protein; Provisional
Probab=98.78 E-value=2.2e-07 Score=89.45 Aligned_cols=137 Identities=17% Similarity=0.160 Sum_probs=108.1
Q ss_pred HHHHHHHHhhhCcccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccC
Q 018309 16 LIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN 95 (358)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~ 95 (358)
.|...++ +...++.|+|- .+.+++.++.+.|+.++++.+.+++....||++.+..+.+|++...|++..+..
T Consensus 177 mi~~vl~-l~~~~v~eiMt---Pr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~---- 248 (413)
T PRK11573 177 MLLSVLD-LEKVTVDDIMV---PRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE---- 248 (413)
T ss_pred HHHHHhc-cCCCChhhcCC---ccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc----
Confidence 5555554 56778899994 346999999999999999999999999999998877899999999999864321
Q ss_pred CCCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceE
Q 018309 96 GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI 175 (358)
Q Consensus 96 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~ 175 (358)
+.... ...+ .. ..+++..++++.++.++++.|.+++.|-+.|+|+ .| ..
T Consensus 249 ~~~~~--------~~~l---~~--------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---yG---~~ 297 (413)
T PRK11573 249 KKEFT--------KENM---LR--------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YG---DI 297 (413)
T ss_pred cCcCC--------HHHH---Hh--------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---CC---Ce
Confidence 01110 1111 11 1347889999999999999999999999999976 56 69
Q ss_pred EEeechHhHHHHHHhh
Q 018309 176 LYLASLSDILKCICRH 191 (358)
Q Consensus 176 vgilt~~di~~~l~~~ 191 (358)
.|++|.+|++.-+.-.
T Consensus 298 ~GiVTleDilEeivGe 313 (413)
T PRK11573 298 QGLVTVEDILEEIVGD 313 (413)
T ss_pred EEEeeHHHHHHHHhCC
Confidence 9999999999977643
No 184
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.77 E-value=2.6e-08 Score=85.24 Aligned_cols=112 Identities=14% Similarity=0.383 Sum_probs=97.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 303 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~-~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 303 (358)
+..++..++++.+++..+.+...+++||+.+ ...+.|++-.+|++..+.+... ...+.+.|
T Consensus 78 QM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL------------ 139 (293)
T COG4535 78 QMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL------------ 139 (293)
T ss_pred HheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc------------
Confidence 5788999999999999999999999999975 4689999999999997764422 13445533
Q ss_pred CCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309 304 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357 (358)
Q Consensus 304 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~ 357 (358)
+|.+.++++-.+...++.|...+.|-..|+| +-|-+-|.||..|||..++|
T Consensus 140 --RPav~VPESKrvd~lLkeFR~~RnHMAIViD-EfGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 140 --RPAVVVPESKRVDRLLKEFRSQRNHMAIVID-EFGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred --ccceecccchhHHHHHHHHHhhcCceEEEEe-ccCCeeeeEEHHHHHHHHhc
Confidence 5788999999999999999999999999999 58999999999999999986
No 185
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=2e-07 Score=89.09 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=87.8
Q ss_pred ecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCccc
Q 018309 229 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRC 308 (358)
Q Consensus 229 v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~ 308 (358)
..++.+..++++.|...+.+++.|+|+++++.|+++..++......+ .++.+ .+....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~-------------~~~~~~ 347 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDA-------------ALIDAP 347 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhh-------------hhccCC
Confidence 34667889999999999999999999999999999999998754321 23344 223457
Q ss_pred eEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309 309 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357 (358)
Q Consensus 309 ~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~ 357 (358)
.++++++++.+++..+.+.... +|||| ++|+++|+||..++++++.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVD-EDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence 8899999999999999998776 99999 58999999999999999854
No 186
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.69 E-value=5.2e-07 Score=87.54 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=93.7
Q ss_pred CCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccc
Q 018309 133 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG 212 (358)
Q Consensus 133 ~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~ 212 (358)
...+..++.+.++.++++.+.+++++|+||+++ ..+ +++|++..+|++........ . .....
T Consensus 215 R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~-~~D----~iiGiv~~Kdll~~~~~~~~-~---------~~~~~--- 276 (429)
T COG1253 215 RTDIVALDLTDTVEELIELILESGHSRIPVYDG-DLD----NIIGIVHVKDLLRALLDGQS-D---------LDLRV--- 276 (429)
T ss_pred cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC-CCC----cEEEEEEHHHHHHHHhcCcc-c---------cchhh---
Confidence 467889999999999999999999999999972 333 79999999999996543321 0 00000
Q ss_pred cccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309 213 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 274 (358)
Q Consensus 213 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~ 274 (358)
.. .++..++++.++.++++.|.+.+.+-..|+|+-|.+.|++|..|++..+..
T Consensus 277 --------~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 277 --------LV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred --------cc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhC
Confidence 01 168899999999999999999999999999999999999999999996653
No 187
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.68 E-value=4.8e-08 Score=89.78 Aligned_cols=107 Identities=19% Similarity=0.282 Sum_probs=92.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 301 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~---~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 301 (358)
+++.++++.++.++++....+++..+||..+ .++++|+||.+|+-.+ ... ...+.+
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~------------ 175 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSD------------ 175 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhh------------
Confidence 5778999999999999999999999999964 4699999999998776 111 345565
Q ss_pred ccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 302 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 302 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
+|+.++++.+.+.+|.++-+.+.+++...+|||| ++|.++.+|+++||.+.
T Consensus 176 -vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~-~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 176 -VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVD-DKGELVAMLSRTDLMKN 226 (503)
T ss_pred -hcccccccccccccHHHHHHHHHhhhcCCcceec-cCCceeeeeehhhhhhh
Confidence 7777778899999999999999999999999999 58999999999999874
No 188
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.57 E-value=1e-07 Score=92.08 Aligned_cols=136 Identities=20% Similarity=0.334 Sum_probs=105.5
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-----CcEEEEEeHHHHHHHHhcccccccc-----cc---
Q 018309 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-----DSLLDIYSRSDITALAKDKAYAQIH-----LD--- 283 (358)
Q Consensus 217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~-----g~liGiis~~dl~~~~~~~~~~~l~-----~~--- 283 (358)
.++|+|.++++++..-+.+..+.+.+.....+.+||+|+. +++.|+|-++.++.+++++.+.... +.
T Consensus 583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~ 662 (762)
T KOG0474|consen 583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR 662 (762)
T ss_pred hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence 5678999999999999999999999999999999999962 5889999999999988765544210 00
Q ss_pred cccHHHHHhcCCC--------------CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehH
Q 018309 284 EMNIHQALQLGQD--------------ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLS 349 (358)
Q Consensus 284 ~~~v~~~l~~~~~--------------~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~ 349 (358)
..+.+++-..... .+.+ .+|.+.++++.+++++..++..|.+-+.+++.||+ ..++.+|++|+.
T Consensus 663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~-p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~-~~~~~~gilTR~ 740 (762)
T KOG0474|consen 663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLH-PFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP-KTNRVVGILTRK 740 (762)
T ss_pred cCCHHHhhhcCCchhhhhcchHhHhhccccc-cccCCCCcccCcccchHHHHHHHHHhcceeEEEec-CCCceeEEEehh
Confidence 1122222111000 0011 17888999999999999999999999999999999 577889999999
Q ss_pred HHHHH
Q 018309 350 DVFRF 354 (358)
Q Consensus 350 Dil~~ 354 (358)
|+.+.
T Consensus 741 D~~~~ 745 (762)
T KOG0474|consen 741 DLARY 745 (762)
T ss_pred hhhhH
Confidence 99854
No 189
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.55 E-value=1.5e-06 Score=82.25 Aligned_cols=109 Identities=10% Similarity=0.195 Sum_probs=88.4
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
......++.+..++++.|...+...+.|+|. ++ ++.|.++.+++..|..... +
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~~------------~--------- 303 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKAQ------------G--------- 303 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcCC------------c---------
Confidence 3345667788999999999999999999965 34 7999999999887654211 1
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 274 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~ 274 (358)
+.+.+...+.++.+++++.+++..|.+++.. +||+|++|+++|+||+.+++..+..
T Consensus 304 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 304 ---LQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred ---hhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 1222445677899999999999999999998 9999999999999999999987654
No 190
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.46 E-value=1.7e-06 Score=79.78 Aligned_cols=168 Identities=17% Similarity=0.190 Sum_probs=116.9
Q ss_pred HHCCCCeeeceeCCCCeEEEeeehHHHHHHHHHhccCC---CCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCC
Q 018309 59 YEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRP 135 (358)
Q Consensus 59 ~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~ 135 (358)
..+.....|++.+ ...-+|..+.+.++..+.--+ .+-..+ .+...+..|+..+.. ....
T Consensus 56 tr~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe-~QA~~v~~vK~~~~g-------------~~~~ 117 (503)
T KOG2550|consen 56 TRNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPE-DQADMVRRVKNYENG-------------FINN 117 (503)
T ss_pred hhcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHH-HHHHHHHHHHHhhcc-------------cccC
Confidence 3444456687754 234467777766554432111 233322 223334455443332 1335
Q ss_pred ceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccccc
Q 018309 136 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 215 (358)
Q Consensus 136 ~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 215 (358)
++.+.|+.++.++++.-..++...+|++.+ ...| .+++|++|-+|+-. +-+ ...
T Consensus 118 p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~-g~~~--~KLvG~vtsrdi~f-~~~-----------~~~----------- 171 (503)
T KOG2550|consen 118 PIVISPTTTVGEVKEAKEKHGFSGIPVTED-GKRG--SKLVGIITSRDIQF-LED-----------NSL----------- 171 (503)
T ss_pred CcccCCcccchhhhhhcccccccccccccC-Cccc--ceeEEEEehhhhhh-hhc-----------ccc-----------
Confidence 677889999999999999999999999963 2222 38999999999843 311 111
Q ss_pred ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 018309 216 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 271 (358)
Q Consensus 216 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~ 271 (358)
-+.++|+...++.+...++.++-+++.+++...+||||++|+++.+++++||.+.
T Consensus 172 -~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 172 -LVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred -hhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 2345588788899999999999999999999999999999999999999999873
No 191
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.42 E-value=4.9e-06 Score=76.29 Aligned_cols=143 Identities=19% Similarity=0.244 Sum_probs=114.6
Q ss_pred chhhHHHHHHHHHhhhCcccccccCCCCcceEEEEcCCCCHHHHHHHHHHCCCCeeeceeCCCCeEEEeeehHHHHHHHH
Q 018309 11 HNTQRLIYSFLVIVYLHSCPHIQYTSSFLTQVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 90 (358)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~sl~~a~~~m~~~~i~~~pV~d~~~~~~vGilt~~Di~~~l~ 90 (358)
+..+.+++..++ |..-++.|+|- .+..+..++.+++..+..+.+...-...+|+|..+..+.+|++-..|+...+.
T Consensus 185 ~~~rdmL~gvLD-Le~~tV~DIMv---pR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~ 260 (423)
T COG4536 185 KIDRDMLLGVLD-LENLTVSDIMV---PRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLN 260 (423)
T ss_pred cccHHHHhcccc-cccceeeeeec---cccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhh
Confidence 334677888876 66788999994 34689999999999999999999999999999888788999999999988775
Q ss_pred HhccCCCCCCHHHHhhcchHHHHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCC
Q 018309 91 ELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG 170 (358)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g 170 (358)
.. .++..+. ..+. ..+++.++..+++.+-+..|.+++-|-..|+|+ .|
T Consensus 261 e~----~~~~k~d-----------~~~~--------------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE---YG 308 (423)
T COG4536 261 EK----NEFTKED-----------ILRA--------------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE---YG 308 (423)
T ss_pred cc----CcccHhH-----------HHHH--------------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec---cC
Confidence 32 1122111 1122 237899999999999999999999999999986 66
Q ss_pred CcceEEEeechHhHHHHHHhhc
Q 018309 171 SCQEILYLASLSDILKCICRHF 192 (358)
Q Consensus 171 ~~~~~vgilt~~di~~~l~~~~ 192 (358)
.+.|++|.+||+.-+.-.+
T Consensus 309 ---~i~GLVTLEDIlEEIVGdf 327 (423)
T COG4536 309 ---DIQGLVTLEDILEEIVGDF 327 (423)
T ss_pred ---cEEeeeeHHHHHHHHhccc
Confidence 8999999999999665443
No 192
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=5.6e-06 Score=79.29 Aligned_cols=106 Identities=13% Similarity=0.152 Sum_probs=85.3
Q ss_pred eCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccc
Q 018309 139 AGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 218 (358)
Q Consensus 139 v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v 218 (358)
..++.+..+|+..|..++...+.|+|+ ++ ++.|+++..++.++.... .+ +
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~------------~ 339 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIER---GN---KFVGAVSIDSLKTALTQQ------------QG------------L 339 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcC---CC---cEEEEEeHHHHHhhhhcC------------Cc------------h
Confidence 446678899999999999999999975 45 899999999997743211 11 1
Q ss_pred cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 018309 219 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 275 (358)
Q Consensus 219 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~ 275 (358)
.+.+.....++.+++++.+++..+.+.... +||+|++|+++|+||..+++..+...
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 340 DAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred hhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 222444677899999999999999997766 99999999999999999999977543
No 193
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.20 E-value=3.5e-06 Score=66.05 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=49.4
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
+++++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+..
T Consensus 59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 466778888999999999999999999999999999999999999999999864
No 194
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.16 E-value=7.3e-06 Score=70.47 Aligned_cols=117 Identities=11% Similarity=0.114 Sum_probs=95.4
Q ss_pred CCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccc
Q 018309 131 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 210 (358)
Q Consensus 131 ~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~ 210 (358)
+....++++..+.++.+++..+.+...+|.||+.++ . +.+.|++-.+|+++|+...... -.+++
T Consensus 74 IPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed--k---D~v~GIL~AKDLL~~~~~~~~~---------F~i~~-- 137 (293)
T COG4535 74 IPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED--K---DHVEGILLAKDLLPFMRSDAEP---------FDIKE-- 137 (293)
T ss_pred ccHHHheeccccCCHHHHHHHHHHhccccCCcccCC--c---hhhhhhhhHHHHHHHhcCCccc---------ccHHH--
Confidence 446679999999999999999999999999999642 2 3799999999999986533221 11222
Q ss_pred cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309 211 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 274 (358)
Q Consensus 211 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~ 274 (358)
+-+|.+.++++-.+...++.|..++.+-..|+|+-|.+-|+||..|++..+-.
T Consensus 138 -----------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 138 -----------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred -----------hcccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhc
Confidence 23467788999999999999999999888899999999999999999987653
No 195
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.15 E-value=6.9e-06 Score=79.69 Aligned_cols=143 Identities=13% Similarity=0.184 Sum_probs=106.0
Q ss_pred CCCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhccc-C-CCCccc----
Q 018309 128 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH-S-SSSLPI---- 201 (358)
Q Consensus 128 ~~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~-~-~~~~~~---- 201 (358)
++++|..|++++..-+.+....+.+.....+..||+|+.+.+ ..+.+.|++-++.++..+.+..-. . ++...+
T Consensus 584 a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~-~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~ 662 (762)
T KOG0474|consen 584 AGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSN-EAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR 662 (762)
T ss_pred HhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCc-cchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence 467899999999999999999999999999999999864332 123789999999998877433111 1 000000
Q ss_pred ---------cccccccccccccc----ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHH
Q 018309 202 ---------LQQPVSSIQLGTWV----PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 268 (358)
Q Consensus 202 ---------~~~~v~~l~i~~~~----~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl 268 (358)
-..+++++.+...+ .....+|++.++++.+++++..+..++++-+.+++.|+++.++.+|++|++|+
T Consensus 663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~ 742 (762)
T KOG0474|consen 663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDL 742 (762)
T ss_pred cCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhh
Confidence 01112222221111 13456788999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 018309 269 TAL 271 (358)
Q Consensus 269 ~~~ 271 (358)
...
T Consensus 743 ~~~ 745 (762)
T KOG0474|consen 743 ARY 745 (762)
T ss_pred hhH
Confidence 863
No 196
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.01 E-value=1.8e-05 Score=50.77 Aligned_cols=47 Identities=28% Similarity=0.483 Sum_probs=43.0
Q ss_pred ceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309 308 CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 355 (358)
Q Consensus 308 ~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~ 355 (358)
+.++.+++++.++.+.|.+.+.+++||++ ++++++|+++..|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVD-EEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEEC-CCCeEEEEEEHHHHHHhh
Confidence 56789999999999999999999999999 468999999999998875
No 197
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.94 E-value=2.5e-05 Score=61.13 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=46.0
Q ss_pred cCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 018309 303 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 353 (358)
Q Consensus 303 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~ 353 (358)
+|.+++.++++++++.++++.|...+.+.+||+| ++|+++|+||..||.+
T Consensus 63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~~~l~Givt~~dl~~ 112 (113)
T cd04597 63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVD-DDGTPAGIITLLDLAE 112 (113)
T ss_pred hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHhhc
Confidence 6777889999999999999999999999999999 4799999999999864
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.93 E-value=3.9e-05 Score=49.15 Aligned_cols=47 Identities=30% Similarity=0.537 Sum_probs=42.6
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309 226 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 272 (358)
Q Consensus 226 ~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~ 272 (358)
+.++.+++++.++++.|.+++.+.+||++++++++|+++..++...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 46788999999999999999999999999889999999999998643
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.00062 Score=66.59 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=88.4
Q ss_pred ceEecCC-CCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHHHHh-ccccc---ccc--cccccHHHHHhcCCC
Q 018309 226 FAMLRPT-ASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAK-DKAYA---QIH--LDEMNIHQALQLGQD 296 (358)
Q Consensus 226 ~~~v~~~-~~l~~a~~~m~~~~~~~vpVvd--~~g~liGiis~~dl~~~~~-~~~~~---~l~--~~~~~v~~~l~~~~~ 296 (358)
..+++.+ .++.+...+|.+...+..||+= +...++|.+.++|+...+. ....+ .-+ ....+...+.....+
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~ 637 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS 637 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence 5555555 7999999999999999999873 3578999999999876432 11110 000 000111111111111
Q ss_pred CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 018309 297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 355 (358)
Q Consensus 297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~ 355 (358)
+..-.++|...+.++...++..-+++++.+-++..+.|.. +|++.|+||..|++++.
T Consensus 638 ~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 638 RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT 694 (696)
T ss_pred CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence 1111137888999999999999999999999998886665 59999999999999875
No 200
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.0029 Score=62.05 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=94.9
Q ss_pred CceEeCCC-CCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCC-C--Ccccccccccccc
Q 018309 135 PLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS-S--SLPILQQPVSSIQ 210 (358)
Q Consensus 135 ~~v~v~~~-~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~-~--~~~~~~~~v~~l~ 210 (358)
++..++.+ .++.+...+|.+...+..||+-+.+ . +..+|++.++++.--+........ . .....+.+.....
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~-s---q~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~ 632 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSED-S---QRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV 632 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccc-c---ceeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence 46666665 7999999999999999999995432 2 279999999998876642211110 0 0012233333222
Q ss_pred ccc-ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 018309 211 LGT-WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 272 (358)
Q Consensus 211 i~~-~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~ 272 (358)
.+. ......++|...+.++...++..-+++++.+-+.+.+.|. ++|++.|+||.+|++...
T Consensus 633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT 694 (696)
T ss_pred CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence 111 1124567888889999999999999999999999999766 689999999999998754
No 201
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0054 Score=55.87 Aligned_cols=145 Identities=19% Similarity=0.239 Sum_probs=96.8
Q ss_pred ceEEEEecCCCCCCcceEEEeechHhHHH-----HHHhhcccCCCCcccccccccccccccccccccccCCC--CceEec
Q 018309 158 ATVPIIHSTGPAGSCQEILYLASLSDILK-----CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGR--PFAMLR 230 (358)
Q Consensus 158 ~~lpV~d~~~~~g~~~~~vgilt~~di~~-----~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~--~~~~v~ 230 (358)
+++.+.. +| +++-+=|+.+|+. |+..+... +... ..-+..++|.. ..+.-.
T Consensus 233 ~rIaimk----dG---~ivQ~Gtp~eIl~~PAndYV~~Fv~~-----------v~~~----~VltA~~IM~~~~~~~~~~ 290 (386)
T COG4175 233 DRIAIMK----DG---EIVQVGTPEEILLNPANDYVRDFVRN-----------VDRS----RVLTAKDIMRRPDLLIRKT 290 (386)
T ss_pred ceEEEec----CC---eEEEeCCHHHHHcCccHHHHHHHHhc-----------CChh----heeeHHHhhcccccccccc
Confidence 4555553 46 8999999999886 22222111 0000 00133445653 222222
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCccceE
Q 018309 231 PTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQM 310 (358)
Q Consensus 231 ~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~ 310 (358)
+...-..++..+.+.+.+.+.+++.+++.+|+++..++.... +..++.+
T Consensus 291 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~-------------------------------~~~~~~~ 339 (386)
T COG4175 291 PGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAA-------------------------------LIDDVLT 339 (386)
T ss_pred cccccchhhhhhhhccchhhHHHhccCceeeEEeccchhccc-------------------------------ccccccc
Confidence 222334677888887777777788778899999988876630 0124677
Q ss_pred EcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309 311 CLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357 (358)
Q Consensus 311 v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~ 357 (358)
+..++++.+.+....+.... ++|+| ++|+++|+++...++.++.+
T Consensus 340 v~~d~~~~~~~~~~~~~~~p-~aVvd-e~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 340 VDADTPLSEILARIRQAPCP-VAVVD-EDGRYVGIISRGELLEALAR 384 (386)
T ss_pred cCccchHHHHHHHHhcCCCc-eeEEc-CCCcEEEEecHHHHHHHHhc
Confidence 88999999999888888775 78999 58999999999999999875
No 202
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.86 E-value=0.0042 Score=59.25 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=72.4
Q ss_pred cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 018309 217 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 296 (358)
Q Consensus 217 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 296 (358)
+..++|.+.......+.+ .+++. ++.+++.|+|+ |+++..+...+..... +.++.+ +
T Consensus 275 ~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~----- 331 (382)
T TIGR03415 275 TARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L----- 331 (382)
T ss_pred eHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-----
Confidence 345667433222233222 44443 78999999985 8888777655433111 122333 1
Q ss_pred CCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 018309 297 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 357 (358)
Q Consensus 297 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~~~~ 357 (358)
.....++++++++.+++..+.+.+.. ++|+| + |+++|+|+..++++++.+
T Consensus 332 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 332 --------EAAPTVINPDTLMRDVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred --------cccCcccCCCCcHHHHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHHhc
Confidence 12467889999999999988887764 88999 4 999999999999999875
No 203
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.028 Score=56.56 Aligned_cols=61 Identities=10% Similarity=0.096 Sum_probs=50.3
Q ss_pred CCCCCCCceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcc
Q 018309 129 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 193 (358)
Q Consensus 129 ~~~~~~~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~ 193 (358)
.++|.+++..+..+.|..|.-+.+....++.+|++++.+ . .-++|.+.++.+..++..+..
T Consensus 591 E~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~e-s---miLlGSV~R~~L~~ll~~~ig 651 (931)
T KOG0476|consen 591 EHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKE-S---MILLGSVARRYLTALLQRHIG 651 (931)
T ss_pred eeeccccceeeeccCcHHHHHHHHHhCccceeccccCcc-c---ceeeehhHHHHHHHHHHhhcC
Confidence 458999999999999999998887776699999997532 2 268999999999998866543
No 204
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.31 E-value=0.21 Score=44.53 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 018309 232 TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 270 (358)
Q Consensus 232 ~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~ 270 (358)
.....+++..+...+.+.+||+|++|+++|.+|..+++.
T Consensus 269 ~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 269 GFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 334466888888899999999999999999999999876
No 205
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.04 E-value=0.11 Score=47.54 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=65.7
Q ss_pred HHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCCC
Q 018309 145 LKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGR 224 (358)
Q Consensus 145 l~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~ 224 (358)
-..++..+.+.+.+.+.+++. .+ +.+|+++..+.... .+.+
T Consensus 295 ~~~al~~~~~~~~~~~~~~~~---~~---~~~g~v~~~~~~~~---------------------------------~~~~ 335 (386)
T COG4175 295 PRVALKLLRDEGREYGYAVDR---GN---KFVGVVSIDSLVKA---------------------------------ALID 335 (386)
T ss_pred cchhhhhhhhccchhhHHHhc---cC---ceeeEEeccchhcc---------------------------------cccc
Confidence 345666776666655555542 33 68888887776551 1344
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309 225 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 273 (358)
Q Consensus 225 ~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~ 273 (358)
.+.++..++++.+.+....+... .+||+|++|+++|++++..++.++.
T Consensus 336 ~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 336 DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence 57788999999998888887654 6889999999999999999998764
No 206
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=93.14 E-value=0.22 Score=47.62 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=42.1
Q ss_pred CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309 222 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 273 (358)
Q Consensus 222 m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~ 273 (358)
+...+.++++++++.+++..+.+.+. -+||+|+ |+++|+|++.+++..+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 331 LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence 34467789999999999999988765 4888885 99999999999998653
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.33 E-value=1.7 Score=38.92 Aligned_cols=113 Identities=15% Similarity=0.230 Sum_probs=68.9
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc--------cccccc-cccccHHHHHhcC
Q 018309 224 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK--------AYAQIH-LDEMNIHQALQLG 294 (358)
Q Consensus 224 ~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~--------~~~~l~-~~~~~v~~~l~~~ 294 (358)
..++.++.| +.+|+++-. ++.|.+ +|+++-+-+..+++....+. ....+. +....+.+.....
T Consensus 187 kTivfVTHD--idEA~kLad-----ri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 187 KTIVFVTHD--IDEALKLAD-----RIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred CEEEEEecC--HHHHHhhhc-----eEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 346677766 778877643 578886 79999999988887632211 000000 0112222222110
Q ss_pred CCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 295 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
. +. .--.........+++..+...+...+||+| ++|+++|.||..+++..
T Consensus 259 ~----~~-----~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 259 E----PA-----DGEPLLEGFVDRDALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLDE 308 (309)
T ss_pred c----cc-----cCCccccchhhHHHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhhh
Confidence 0 00 001122344455588888899999999999 58999999999999864
No 208
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=85.80 E-value=1.1 Score=45.57 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=53.2
Q ss_pred cccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhc
Q 018309 213 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKD 274 (358)
Q Consensus 213 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~--~g~liGiis~~dl~~~~~~ 274 (358)
.+...|.++|-+++.++..+.|..|..+.+....++.+|+||+ ...++|.|+++.+..++..
T Consensus 585 ~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 585 VHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred eeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 3445788999999999999999999998888777999999985 4578999999999887754
No 209
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=75.84 E-value=9.5 Score=39.25 Aligned_cols=98 Identities=12% Similarity=0.150 Sum_probs=61.3
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc-cccccccccc-----ccHHHHHhcCCCCCCCcccCCccc
Q 018309 235 LGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD-KAYAQIHLDE-----MNIHQALQLGQDANPSLGFNGQRC 308 (358)
Q Consensus 235 l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~-~~~~~l~~~~-----~~v~~~l~~~~~~~~~~~~~~~~~ 308 (358)
+.+..+.+...+ ..+++.|.+|.+++.....++...... +......|.+ -.+..++. ...+
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~------------~~~p 127 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAI------------SGQP 127 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHh------------cCCc
Confidence 445555555555 688899999999999998888765442 1111112212 22333332 2346
Q ss_pred eEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehH
Q 018309 309 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLS 349 (358)
Q Consensus 309 ~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~ 349 (358)
+.|...+...+.+. ...+...||.|+ +|+++|+++.+
T Consensus 128 v~v~g~EH~~~~~~---~~~c~aaPI~d~-~G~liGvl~l~ 164 (638)
T PRK11388 128 VKTMGDQHFKQALH---NWAFCATPVFDS-KGRLTGTIALA 164 (638)
T ss_pred eEEecHHHHHHhcc---CceEEeeEEEcC-CCCEEEEEEEE
Confidence 66666666555444 445668999995 79999999743
No 210
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=72.46 E-value=6.1 Score=39.24 Aligned_cols=114 Identities=14% Similarity=0.206 Sum_probs=73.1
Q ss_pred ccccCCC--CceEecCCCCHH-HHHHHHHhCCCCEEEEEcCCC--cEEEEEeHHHHHHHHhcccccccccccccHHHHHh
Q 018309 218 IGEANGR--PFAMLRPTASLG-SALALLVQADVSSIPIVDDND--SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ 292 (358)
Q Consensus 218 v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~vpVvd~~g--~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~ 292 (358)
++++|++ .+.....+..+. +......+++++++||.+.+. .+.|.+....+ .+..... .+...++..
T Consensus 206 ~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~-~~~~~~~----~~~~~~v~~--- 277 (498)
T KOG2118|consen 206 VGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL-RLLQVEV----PLEPLPVSE--- 277 (498)
T ss_pred HHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh-hhhcccc----ccccccchh---
Confidence 3455553 456666777665 566666789999999997532 22232222222 1111110 111233333
Q ss_pred cCCCCCCCcccCCccceEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHH
Q 018309 293 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDV 351 (358)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~Di 351 (358)
.+..++..++.++++.+..+.+...+.|-+.|.+ ...-+++++..|+
T Consensus 278 ----------~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~--~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 278 ----------SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN--GHVDIFVLTLEDL 324 (498)
T ss_pred ----------hhccccccCCCcccHHHHHHHHhhhhceeEEEec--CCcceeeEeccch
Confidence 4455778889999999999999999998887777 3668999999887
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=65.60 E-value=32 Score=35.38 Aligned_cols=101 Identities=10% Similarity=0.007 Sum_probs=58.0
Q ss_pred HHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccccccccccCCCC
Q 018309 146 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRP 225 (358)
Q Consensus 146 ~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~ 225 (358)
.+..+.+...+ ..+++.|. +| .++++....++...+....-. + ...+....++.-.+|+.. ....
T Consensus 62 ~~l~~~l~~~~-~~~~l~D~---~G---~vL~~~g~~~~~~~~~~~~~~-~-G~~w~E~~~GTnaig~al------~~~~ 126 (638)
T PRK11388 62 EDAWEYMADRE-CALLILDE---TG---CILSRNGDPQTLQQLSALGFN-D-GTYCAEGIIGTNALSLAA------ISGQ 126 (638)
T ss_pred HHHHHHhcCCC-cEEEEEcC---Cc---eEEEEeCCHHHHHHHHHcCCc-c-CCccchhccCcCHHHHHH------hcCC
Confidence 33344555445 67788865 56 899999888877755431111 0 012222223222222221 1234
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEe
Q 018309 226 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 264 (358)
Q Consensus 226 ~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis 264 (358)
++.+...+ .-.+.+......+.||.|.+|+++|+++
T Consensus 127 pv~v~g~E---H~~~~~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 127 PVKTMGDQ---HFKQALHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred ceEEecHH---HHHHhccCceEEeeEEEcCCCCEEEEEE
Confidence 55566553 3344455567789999999999999996
No 212
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=56.50 E-value=26 Score=25.12 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 018309 247 VSSIPIVDDNDSLLDIYSRSDITALAKDK 275 (358)
Q Consensus 247 ~~~vpVvd~~g~liGiis~~dl~~~~~~~ 275 (358)
...+-|+|++|+.+|+++.++.+.+..+.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~ 40 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEK 40 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHc
Confidence 45677899999999999999999877644
No 213
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=37.34 E-value=71 Score=22.84 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=18.4
Q ss_pred CCEEEEEeCCCCeEEEEEehHHHHHH
Q 018309 329 VRRLVIVEAGSKRVEGIISLSDVFRF 354 (358)
Q Consensus 329 ~~~l~Vvd~~~~~liGvis~~Dil~~ 354 (358)
...+-+|| ++|..+|+++..+-++.
T Consensus 12 ~~~VrlI~-~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLID-EDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE--TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEEC-CCCcEeceEEHHHHHHH
Confidence 34577899 58999999999998875
No 214
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=35.76 E-value=39 Score=26.06 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=12.9
Q ss_pred CEEEEEcCCCcEEEEEe
Q 018309 248 SSIPIVDDNDSLLDIYS 264 (358)
Q Consensus 248 ~~vpVvd~~g~liGiis 264 (358)
-..||.|.+|+++|+++
T Consensus 92 ~~~PV~d~~g~viG~V~ 108 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVS 108 (116)
T ss_dssp EEEEEE-TTS-EEEEEE
T ss_pred EEEeeECCCCcEEEEEE
Confidence 36899998999999986
No 215
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=29.39 E-value=1.2e+02 Score=30.33 Aligned_cols=109 Identities=9% Similarity=0.118 Sum_probs=66.9
Q ss_pred CceEeCCCCCHH-HHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCccccccccccccccc
Q 018309 135 PLVQAGPYDSLK-EVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 213 (358)
Q Consensus 135 ~~v~v~~~~sl~-~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 213 (358)
.+..+..+..+. +......++|++++||.+.... ..+|.+=....++|+.... .+...
T Consensus 215 ~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~-----~~i~~~L~~~~~~~~~~~~-------~~~~~--------- 273 (498)
T KOG2118|consen 215 DVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPK-----NKIGGLLVMNLLRLLQVEV-------PLEPL--------- 273 (498)
T ss_pred hheeeccccccchHHHhhHhhcCcceeeeccCccc-----chhhHHHHhhhhhhhcccc-------ccccc---------
Confidence 455556666665 5556667899999999965222 2333322223333221110 11112
Q ss_pred ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHH
Q 018309 214 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 268 (358)
Q Consensus 214 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl 268 (358)
.+++.+......++.+.++.+..+.+.+.+.+.+.|.+ ...-+++++..|+
T Consensus 274 ---~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 274 ---PVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL 324 (498)
T ss_pred ---cchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch
Confidence 22333555677889999999999999886666666555 5667899998887
No 216
>COG1559 Aminodeoxychorismate lyase [Coenzyme transport and metabolism]
Probab=26.65 E-value=5.5e+02 Score=24.24 Aligned_cols=145 Identities=16% Similarity=0.171 Sum_probs=86.3
Q ss_pred CceEeCCCCCHHHHHHHHhhCCcceEEEEecCCCCCCcceEEEeechHhHHHHHHhhcccCCCCcccccccccccccccc
Q 018309 135 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 214 (358)
Q Consensus 135 ~~v~v~~~~sl~~al~~m~~~~~~~lpV~d~~~~~g~~~~~vgilt~~di~~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 214 (358)
..+.+.+.+++.+....+.+++ ++....+.+++....... +.+..|
T Consensus 46 ~~v~I~~Gs~~~~i~~~Le~~~---------------------vI~~~~~f~~~~~~~~~~-----------~~lkaG-- 91 (342)
T COG1559 46 KTVTIPPGSSVSEIGSELEKQK---------------------VIKNARVFRLYLKYNPAA-----------GSLKAG-- 91 (342)
T ss_pred eEEEECCCCCHHHHHHHHHhcC---------------------ccccHHHHHHHHHhcCcc-----------CCcCCc--
Confidence 7889999999999999987643 555667888777655331 223333
Q ss_pred cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 018309 215 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 294 (358)
Q Consensus 215 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~~~~~~~~~~~l~~~~~~v~~~l~~~ 294 (358)
-..+.+..+..++++.|.+-+.....++=.+| -+.+|+...+.+..............++...-
T Consensus 92 -----------~Y~l~~~ms~~~il~~L~~Gk~~~~~~~ipEG-----~t~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~ 155 (342)
T COG1559 92 -----------EYRLRPGMSAADILKLLESGKSAQFKVTIPEG-----YTLKQIAKKLAEAPVLDGVLDGLAIAEIAARL 155 (342)
T ss_pred -----------eeecCCCCCHHHHHHHHhcCccccceEecCCC-----ccHHHHHHHHhcchhhhhhhhhhhhHHHHHhc
Confidence 34578888999999999875444443331233 46777777665433322211122223322111
Q ss_pred CCC-CCCc-ccCCccceEEcCCCCHHHHHHHHhcCCC
Q 018309 295 QDA-NPSL-GFNGQRCQMCLRSDPLHKVMERLANPGV 329 (358)
Q Consensus 295 ~~~-~~~~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~ 329 (358)
..+ .... |+.-++-+.++++++-.++++.|.++.-
T Consensus 156 p~~~~~~~EG~l~PdTY~~~~g~~~~~Ii~~mi~~~~ 192 (342)
T COG1559 156 PKLDKERLEGYLFPDTYEFTRGTSAEDIIKRMIKAMD 192 (342)
T ss_pred CCCcCCCCceeecCceeeeCCCCCHHHHHHHHHHHHH
Confidence 100 0011 2333456778899999999999987643
No 217
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=24.24 E-value=1.3e+02 Score=25.30 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=26.2
Q ss_pred CCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 018309 245 ADVSSIPIVDDNDSLLDIYSRSDITALAKDK 275 (358)
Q Consensus 245 ~~~~~vpVvd~~g~liGiis~~dl~~~~~~~ 275 (358)
-++..+-+++++|.-+|+++..+.+.+..+.
T Consensus 16 Ir~~evrlIg~~GeqlGiv~~~eAL~lA~e~ 46 (176)
T COG0290 16 IRAREVRLIGEDGEQLGIVSIEEALKLAEEA 46 (176)
T ss_pred ccccEEEEECCCCcEEcceeHHHHHHHHHHc
Confidence 3567788899999999999999999977654
No 218
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=23.49 E-value=89 Score=21.98 Aligned_cols=16 Identities=31% Similarity=0.744 Sum_probs=13.2
Q ss_pred EEEEEcCCCcEEEEEe
Q 018309 249 SIPIVDDNDSLLDIYS 264 (358)
Q Consensus 249 ~vpVvd~~g~liGiis 264 (358)
+.||.+++|+++|++.
T Consensus 18 s~pi~~~~g~~~Gvv~ 33 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVG 33 (81)
T ss_dssp EEEEEETTTEEEEEEE
T ss_pred EEEEECCCCCEEEEEE
Confidence 4788888899999874
No 219
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=22.87 E-value=60 Score=24.41 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=17.0
Q ss_pred hCCCCEEEEEcCCCcEEEE
Q 018309 244 QADVSSIPIVDDNDSLLDI 262 (358)
Q Consensus 244 ~~~~~~vpVvd~~g~liGi 262 (358)
..+.+.=||+|.+|+++|+
T Consensus 102 ~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 102 RPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp STTTTTSEEEETTSEEEEE
T ss_pred CCCcEeHhEECCCCEEEeC
Confidence 5688899999999999997
No 220
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=22.69 E-value=89 Score=26.41 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=14.6
Q ss_pred CEEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309 248 SSIPIVDDNDSLLDIYSRSDITALAK 273 (358)
Q Consensus 248 ~~vpVvd~~g~liGiis~~dl~~~~~ 273 (358)
..|-|+|++|..+|+++..+.+....
T Consensus 20 ~~Vrli~~dG~~lgv~~~~eAl~~A~ 45 (177)
T PRK00028 20 REVRLIGDDGEQLGIVSTREALELAE 45 (177)
T ss_pred CEEEEECCCCcCCCceeHHHHHHHHH
Confidence 34555555666666666666555443
No 221
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=22.13 E-value=84 Score=26.23 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=12.9
Q ss_pred EEEEEcCCCcEEEEEeHHHHHHHHh
Q 018309 249 SIPIVDDNDSLLDIYSRSDITALAK 273 (358)
Q Consensus 249 ~vpVvd~~g~liGiis~~dl~~~~~ 273 (358)
.+-++|++|..+|+++..+.+....
T Consensus 9 ~Vrli~~dG~~lgv~~~~eAl~~A~ 33 (165)
T TIGR00168 9 EVRLIDENGEQLGIVSREEALEIAE 33 (165)
T ss_pred EEEEECCCCcCCCcccHHHHHHHHH
Confidence 4445555555555555555555443
No 222
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=21.76 E-value=2.3e+02 Score=28.90 Aligned_cols=103 Identities=8% Similarity=0.082 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH-HHHhcccccccccccccHHHHHhcCCCCCCCcccCCccceEEcC
Q 018309 235 LGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 313 (358)
Q Consensus 235 l~~a~~~m~~~~~~~vpVvd~~g~liGiis~~dl~-~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~ 313 (358)
+......+...+ .++...|.+|-+++..-..--. .+-+-+-+.--.|.+..++. +...+. +....++++..
T Consensus 76 L~~L~~~v~~~~-~~vLLtD~~GViL~~~G~~~~~~~~rk~gl~~Ga~WSE~~~GT------NgIGTc-Lve~~aVtI~~ 147 (606)
T COG3284 76 LDRLFQAVAGSG-CCVLLTDADGVILERRGDPRDDEDFRKAGLWLGAVWSEPREGT------NGIGTC-LVEGEAVTIHG 147 (606)
T ss_pred HHHHHHHhcCCC-eEEEEEcCceeEEEeecChhhhhhhhhhccccccccccccccc------cchhhh-hccCcceEEeh
Confidence 444445544443 4677789899888876542211 11111222222222221111 111111 34457889999
Q ss_pred CCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehH
Q 018309 314 SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLS 349 (358)
Q Consensus 314 ~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvis~~ 349 (358)
++.+..+.. .-.+...||-| ++|+++|++..+
T Consensus 148 ~qHF~~~~~---~lsCsAaPI~D-~qG~L~gVLDIS 179 (606)
T COG3284 148 DQHFIQAHH---GLSCSAAPIFD-EQGELVGVLDIS 179 (606)
T ss_pred hhhHhhccc---Cceeeeecccc-CCCcEEEEEEec
Confidence 888775543 34456789999 589999999877
No 223
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=21.66 E-value=49 Score=25.24 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=20.8
Q ss_pred hCCCCEEEEEcC-CCcEE----EEEeHHHHHHHHh
Q 018309 244 QADVSSIPIVDD-NDSLL----DIYSRSDITALAK 273 (358)
Q Consensus 244 ~~~~~~vpVvd~-~g~li----Giis~~dl~~~~~ 273 (358)
..+...+.++|. +|+++ |.++.++++..+.
T Consensus 74 ~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~ 108 (114)
T cd02958 74 VDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLI 108 (114)
T ss_pred ccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHH
Confidence 345555667787 77665 8888888887654
No 224
>PRK03972 ribosomal biogenesis protein; Validated
Probab=21.07 E-value=1.7e+02 Score=25.45 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=31.2
Q ss_pred eEEcCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEE
Q 018309 309 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGII 346 (358)
Q Consensus 309 ~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~~~~liGvi 346 (358)
..-....++.+.++...+.+...+.||++..|++-|++
T Consensus 30 ~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~ 67 (208)
T PRK03972 30 YLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMT 67 (208)
T ss_pred EEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEE
Confidence 44456889999999999999999999997567776654
No 225
>CHL00199 infC translation initiation factor 3; Provisional
Probab=20.70 E-value=1.1e+02 Score=26.08 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=18.6
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 018309 247 VSSIPIVDDNDSLLDIYSRSDITALAKD 274 (358)
Q Consensus 247 ~~~vpVvd~~g~liGiis~~dl~~~~~~ 274 (358)
...+-|+|++|+.+|+++..+.+....+
T Consensus 24 ~~~VrlI~~~G~~lGv~~~~eAl~~A~~ 51 (182)
T CHL00199 24 FPKVRVIDDSGEQLGIFTSEQAIQLAAN 51 (182)
T ss_pred CCEEEEECCCCcCCCceeHHHHHHHHHH
Confidence 4456667777777777777777765543
Done!