Query 018312
Match_columns 358
No_of_seqs 157 out of 1709
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 07:56:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02558 CDP-diacylglycerol-gl 100.0 4.2E-42 9.2E-47 317.3 23.0 202 157-358 2-203 (203)
2 PRK10832 phosphatidylglyceroph 100.0 4.5E-38 9.7E-43 286.2 22.5 179 164-358 3-181 (182)
3 TIGR00560 pgsA CDP-diacylglyce 100.0 1.4E-36 3.1E-41 276.0 22.1 178 164-358 1-181 (182)
4 PLN02794 cardiolipin synthase 100.0 1E-35 2.2E-40 290.7 19.7 210 130-355 108-332 (341)
5 COG0558 PgsA Phosphatidylglyce 100.0 3.9E-31 8.4E-36 240.2 20.8 180 162-358 10-190 (192)
6 KOG1617 CDP-alcohol phosphatid 100.0 5.2E-29 1.1E-33 232.0 12.5 163 158-348 62-237 (243)
7 PF01066 CDP-OH_P_transf: CDP- 99.7 3.3E-16 7.2E-21 128.5 10.1 75 164-240 2-76 (101)
8 KOG3240 Phosphatidylinositol s 99.4 9.4E-13 2E-17 121.5 11.6 143 159-315 8-164 (218)
9 TIGR00473 pssA CDP-diacylglyce 99.2 8.9E-10 1.9E-14 98.2 14.8 66 171-239 1-66 (151)
10 COG1183 PssA Phosphatidylserin 99.0 1.7E-08 3.6E-13 96.0 14.9 71 162-235 7-77 (234)
11 PLN02359 ethanolaminephosphotr 98.6 2.3E-06 4.9E-11 86.9 16.8 82 162-243 42-131 (389)
12 PTZ00307 ethanolamine phosphot 98.5 1.1E-06 2.4E-11 89.9 12.4 83 162-244 58-148 (417)
13 KOG2877 sn-1,2-diacylglycerol 98.0 6.1E-05 1.3E-09 76.3 12.5 96 161-261 47-151 (389)
14 COG5050 EPT1 sn-1,2-diacylglyc 97.4 0.00056 1.2E-08 68.4 8.3 82 162-244 42-132 (384)
15 PLN03039 ethanolaminephosphotr 95.3 0.027 5.9E-07 56.5 5.4 41 196-237 33-73 (337)
16 PF03116 NQR2_RnfD_RnfE: NQR2, 48.2 2.8E+02 0.006 27.8 11.7 81 165-261 14-95 (313)
17 TIGR01937 nqrB NADH:ubiquinone 35.9 5.5E+02 0.012 27.1 12.2 24 165-188 50-73 (413)
18 KOG1617 CDP-alcohol phosphatid 34.2 51 0.0011 32.1 3.9 31 328-358 212-242 (243)
19 PF02654 CobS: Cobalamin-5-pho 33.8 1.3E+02 0.0029 28.4 6.7 24 203-226 73-103 (235)
20 PRK05349 Na(+)-translocating N 31.0 6.5E+02 0.014 26.5 11.6 24 164-187 51-74 (405)
21 TIGR01946 rnfD electron transp 24.2 6.6E+02 0.014 25.5 10.0 79 167-261 11-91 (327)
22 PRK14773 lipoprotein signal pe 23.3 4.3E+02 0.0093 24.8 7.9 45 169-213 96-142 (192)
23 PRK00816 rnfD electron transpo 22.8 6.8E+02 0.015 25.7 9.8 71 175-261 25-97 (350)
24 PF00242 DNA_pol_viral_N: DNA 20.2 5.3E+02 0.011 26.9 8.4 15 13-27 168-182 (379)
No 1
>PLN02558 CDP-diacylglycerol-glycerol-3-phosphate/ 3-phosphatidyltransferase
Probab=100.00 E-value=4.2e-42 Score=317.32 Aligned_cols=202 Identities=83% Similarity=1.281 Sum_probs=163.8
Q ss_pred CCCCCcccccchHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhCCCCCchhhhhhhhHHHHHH
Q 018312 157 HQPSNKILTLPTILTLGRVAAVPLLICTFYVDSWWGRTATTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMV 236 (358)
Q Consensus 157 ~~~~~~~~tiPNlLTl~RIiL~pv~~~l~~~~~~~~~~~al~lfilA~lTD~LDG~LAR~~n~~S~fGa~LDPlADKIli 236 (358)
+.++++++|+||.+|++|++++|+++++++.+..+.++.++++|+++++||++|||+|||+||+|+||++|||+|||+++
T Consensus 2 ~~~~~~~~~lPN~LT~~RI~liP~~~~l~~~~~~~~~~~A~~lf~~a~lTD~lDG~lAR~~n~~T~~G~~lDPiaDKll~ 81 (203)
T PLN02558 2 QQLSSKVLTLPTVLTLGRVAAVPLLVATFYVDSWWGRTATTSIFIAAAITDWLDGYLARKMKLGTAFGAFLDPVADKLMV 81 (203)
T ss_pred CCccchhhhhhHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhHHHHHHcCCCChHHHHHhHHHHHHHH
Confidence 34577889999999999999999999887765544456788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCccccCcchhhhHHhHHHHHHHHHHHHHHHHHHHhhccchhhhcccccchHHHHHHHHHHHHHHHhhc
Q 018312 237 AATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTRLLEAVAVNNLGKWKTATQMIALTILLTTR 316 (358)
Q Consensus 237 la~li~L~~~~l~~~~~g~iPw~l~v~ailII~Re~lIs~lR~~~~~~g~~~~~~i~as~lGKvkTalq~val~llLl~~ 316 (358)
.++++.++..+......|.+|||+.+++++++.||++++++|.++..++.....+++++++||+||++|+++++++++..
T Consensus 82 ~~~~~~l~~~~~~~~~~~~~p~w~~~~~~iii~Re~~I~~lr~~~~~~~g~~~~~i~a~~~GK~kT~~q~~ai~~ll~~~ 161 (203)
T PLN02558 82 AAALILLCSRPLEVAVLGEVPWLFTVPAIAIIGREITMSAVREWAASQNGKLLEAVAVNNLGKWKTATQMISLTILLASR 161 (203)
T ss_pred HHHHHHHHHhhhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCChhHHHHHHHHHHHHHHHHHhh
Confidence 99999887532212235789999865567899999999999998876532111358899999999999999999888643
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018312 317 DSSIGGPWILVCSGVVLLYISAGLSVWSLVVYMGKISKVLLK 358 (358)
Q Consensus 317 ~~~~~~~~~l~~~g~~Ll~iaa~LtiiS~v~Yi~~~~r~l~k 358 (358)
...+..+.....++..++|+++++|++|+++|+.+.+|.++|
T Consensus 162 ~~~~~~~~~~~~~~~~ll~~a~~ltl~Sg~~Y~~~~~~~~~~ 203 (203)
T PLN02558 162 DSSLEGPGILVPSGVGLLYISAGLSIWSLAVYMSKIWKVLLK 203 (203)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111111112234567889999999999999999999999987
No 2
>PRK10832 phosphatidylglycerophosphate synthetase; Provisional
Probab=100.00 E-value=4.5e-38 Score=286.15 Aligned_cols=179 Identities=42% Similarity=0.736 Sum_probs=149.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 018312 164 LTLPTILTLGRVAAVPLLICTFYVDSWWGRTATTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLVLL 243 (358)
Q Consensus 164 ~tiPNlLTl~RIiL~pv~~~l~~~~~~~~~~~al~lfilA~lTD~LDG~LAR~~n~~S~fGa~LDPlADKIlila~li~L 243 (358)
+|+||.+|++|++++|+++++++.+..+...+++.+|++|++||++||++|||+||+|++|++|||+|||+++.++++.+
T Consensus 3 ~~ipN~lT~~Ri~l~P~~~~~~~~~~~~~~~~a~~lf~~a~~TD~lDG~iAR~~~~~S~lG~~LDPlADKll~~~~l~~l 82 (182)
T PRK10832 3 FNIPTLLTLFRVILIPFFVLVFYLPFTWAPFVCALIFCVAAVTDWFDGFLARRWNQSTRFGAFLDPVADKVMVAIAMVLV 82 (182)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhHHHHHHcCCCChHHHHHhHHHHHHHHHHHHHHH
Confidence 68999999999999999988776544334467889999999999999999999999999999999999999999888765
Q ss_pred hccCCCccccCcchhhhHHhHHHHHHHHHHHHHHHHHHHhhccchhhhcccccchHHHHHHHHHHHHHHHhhcCCCCCCc
Q 018312 244 CTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTRLLEAVAVNNLGKWKTATQMIALTILLTTRDSSIGGP 323 (358)
Q Consensus 244 ~~~~l~~~~~g~iPw~l~v~ailII~Re~lIs~lR~~~~~~g~~~~~~i~as~lGKvkTalq~val~llLl~~~~~~~~~ 323 (358)
. .+..|||..+++++++.||++++++|.+...+|++ ..++++++||+||++|+++++.+++....
T Consensus 83 ~--------~~~~~~w~~l~~~li~~Rd~~i~~~r~~~~~~g~~--~~~~a~~~GK~kT~~q~~~i~~ll~~~~~----- 147 (182)
T PRK10832 83 T--------EHYHSWWVTLPAATMIAREIIISALREWMAELGKR--SSVAVSWIGKVKTTAQMVALAWLLWRPNI----- 147 (182)
T ss_pred H--------HccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CccCCcHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence 4 23458887655578999999999999988766532 45789999999999999999888764210
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018312 324 WILVCSGVVLLYISAGLSVWSLVVYMGKISKVLLK 358 (358)
Q Consensus 324 ~~l~~~g~~Ll~iaa~LtiiS~v~Yi~~~~r~l~k 358 (358)
....++..++|++++++++|+++|+.+.++.+++
T Consensus 148 -~~~~~~~~l~~~~~~lt~~Sg~~Y~~~~~~~~~~ 181 (182)
T PRK10832 148 -WVEYAGIALFFVAAVLTLWSMLQYLSAARGDLLD 181 (182)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1224567789999999999999999999988764
No 3
>TIGR00560 pgsA CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.
Probab=100.00 E-value=1.4e-36 Score=276.03 Aligned_cols=178 Identities=42% Similarity=0.611 Sum_probs=148.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHhHHHHhhCCCCCchhhhhhhhHHHHHHHHHH
Q 018312 164 LTLPTILTLGRVAAVPLLICTFYV---DSWWGRTATTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATL 240 (358)
Q Consensus 164 ~tiPNlLTl~RIiL~pv~~~l~~~---~~~~~~~~al~lfilA~lTD~LDG~LAR~~n~~S~fGa~LDPlADKIlila~l 240 (358)
+|+||.+|++|++++|+++++++. +..+...+++++|+++++||++||++|||+||+|++|++|||+|||+++.+++
T Consensus 1 ~~ipN~lT~~Ri~l~p~~~~~~~~~~~~~~~~~~~a~~l~~~a~~tD~lDG~iAR~~~~~S~~G~~LDp~aDk~~~~~~~ 80 (182)
T TIGR00560 1 KNIPNWLTLFRIIALPIFILFFLENVLPIQVSPFIGALLFIFAAVTDWLDGYLARKWNQVSNFGKFLDPLADKVLVLAVL 80 (182)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHhHHHHHHcCCCChHHHHHHHHhhHHHHHHHH
Confidence 489999999999999998876653 11223467788999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCccccCcchhhhHHhHHHHHHHHHHHHHHHHHHHhhccchhhhcccccchHHHHHHHHHHHHHHHhhcCCCC
Q 018312 241 VLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTRLLEAVAVNNLGKWKTATQMIALTILLTTRDSSI 320 (358)
Q Consensus 241 i~L~~~~l~~~~~g~iPw~l~v~ailII~Re~lIs~lR~~~~~~g~~~~~~i~as~lGKvkTalq~val~llLl~~~~~~ 320 (358)
+.+.. .+.+|+|++ ++++.||+++++.|.+...+| ..++++++||+||++|+++++.+++... .+
T Consensus 81 ~~l~~-------~~~~p~w~~---~li~~Re~~i~~~r~~~~~~g----~~~~a~~~GK~kT~~q~~ai~~~ll~~~-~~ 145 (182)
T TIGR00560 81 IILVY-------HGYVPAWFV---IVIIAREIVISGLRVLAAEKK----VVIAANWLGKWKTTAQMVAIGALLLWRL-TF 145 (182)
T ss_pred HHHHH-------hccchHHHH---HHHHHHHHHHHHHHHHHHhcC----CCCCCCccHHHHHHHHHHHHHHHHHhhc-cc
Confidence 88863 577898886 688999999999999887766 4688999999999999999988666321 11
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018312 321 GGPWILVCSGVVLLYISAGLSVWSLVVYMGKISKVLLK 358 (358)
Q Consensus 321 ~~~~~l~~~g~~Ll~iaa~LtiiS~v~Yi~~~~r~l~k 358 (358)
. .....++..++|++++++++|+++|+.++++.+++
T Consensus 146 ~--~~~~~~~~~l~~i~~~ltv~Sg~~Y~~~~~~~~~~ 181 (182)
T TIGR00560 146 K--IFFEFIVQLLYYIAAFFTLWSFIEYLIKAYNSLKD 181 (182)
T ss_pred h--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 11124567889999999999999999999998764
No 4
>PLN02794 cardiolipin synthase
Probab=100.00 E-value=1e-35 Score=290.66 Aligned_cols=210 Identities=19% Similarity=0.231 Sum_probs=162.2
Q ss_pred ccCCcccccccCCcccccCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 018312 130 DMDHQDNAKAVNGGWYCDQTPSPSIQQHQPSNKILTLPTILTLGRVAAVPLLICTFYVDSWWGRTATTSIFIAAAVTDWL 209 (358)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tiPNlLTl~RIiL~pv~~~l~~~~~~~~~~~al~lfilA~lTD~L 209 (358)
+.+.|.+.+++.|+.+...+++...+.....++++|+||++|++|++++|+++++++.+. ..+++++|++|++||++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nIPNlLTl~RIlLvP~~i~~~l~~~---~~~A~~lfiiAglTD~L 184 (341)
T PLN02794 108 GGGGQGVLDAVVWELRRIDRDESEVADGGIVKSFVNLPNLISISRLVSGPVIGWMIVNEM---YLSAFVGLAISGASDWL 184 (341)
T ss_pred CccccchhhhhhhhhhhccccccccccchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHh
Confidence 455677777788886655555444333345678999999999999999999988665332 34678899999999999
Q ss_pred hHHHHhhCCCCCchhhhhhhhHHHHHHHHHHHHHhccCCCccccCcchhhhHHhHHHHHHHHHHHHHHHHHHHhhc----
Q 018312 210 DGYIARKMRLGSTFGAFLDPVADKLMVAATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQN---- 285 (358)
Q Consensus 210 DG~LAR~~n~~S~fGa~LDPlADKIlila~li~L~~~~l~~~~~g~iPw~l~v~ailII~Re~lIs~lR~~~~~~g---- 285 (358)
||++||++|++|+||++|||+|||+++.+++++++. .+.+|+|++ ++++.||+++.+.+.+.+..+
T Consensus 185 DGyIARk~n~vS~lGk~LDPLADKllv~svli~L~~-------~~~lp~wlv---~lIi~RDi~I~~g~~~~r~~sl~~~ 254 (341)
T PLN02794 185 DGYVARKMGINSVVGSYLDPLADKVLIGCVALAMVE-------KDLLHPGLV---GLVVLRDVALVGGAVYKRASSLGWK 254 (341)
T ss_pred hHHHHHHcCCCChhHHHHhHHHHHHHHHHHHHHHHH-------hccchHHHH---HHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999988763 467888875 689999999988776554210
Q ss_pred -----------cchhhhcccccchHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018312 286 -----------TRLLEAVAVNNLGKWKTATQMIALTILLTTRDSSIGGPWILVCSGVVLLYISAGLSVWSLVVYMGKISK 354 (358)
Q Consensus 286 -----------~~~~~~i~as~lGKvkTalq~val~llLl~~~~~~~~~~~l~~~g~~Ll~iaa~LtiiS~v~Yi~~~~r 354 (358)
......++++++||+||++|+++++++++... ++.. ....+..+++|++++++++|++.|+.+++|
T Consensus 255 ~~~~~~~~~~~g~~~~~I~as~lGKikT~lQ~vaI~~lLl~~~--~~~~-~~~~~~~~Ll~l~avlTviSgv~Y~~~~~~ 331 (341)
T PLN02794 255 WNSWSDFFNLDGTRPEKVEPLFISKVNTVFQLMLVAAALLQPE--FGTE-ETQNYITYLSWLVASTTVASTAAYGVQYMK 331 (341)
T ss_pred cchhhhhhhccCCCceeecccHHHHHHHHHHHHHHHHHHHhhh--hccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00013588999999999999999988877532 1110 011234678899999999999999988876
Q ss_pred H
Q 018312 355 V 355 (358)
Q Consensus 355 ~ 355 (358)
.
T Consensus 332 ~ 332 (341)
T PLN02794 332 N 332 (341)
T ss_pred H
Confidence 5
No 5
>COG0558 PgsA Phosphatidylglycerophosphate synthase [Lipid metabolism]
Probab=99.98 E-value=3.9e-31 Score=240.24 Aligned_cols=180 Identities=40% Similarity=0.483 Sum_probs=148.9
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhCCCCCchhhhhhhhHHHHHHHHHHH
Q 018312 162 KILTLPTILTLGRVAAVPLLICTFYVDSWWGRTATTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATLV 241 (358)
Q Consensus 162 ~~~tiPNlLTl~RIiL~pv~~~l~~~~~~~~~~~al~lfilA~lTD~LDG~LAR~~n~~S~fGa~LDPlADKIlila~li 241 (358)
...++||.+|++|++++|++.++++.+..+...++.++|.++++||++||++||++||+|+||++|||++||+++.++++
T Consensus 10 ~~~~~PN~lTl~r~~l~~~~~~~~~~~~~~~~~~~~~l~~~a~l~D~lDG~lAR~~~~~S~~G~~LDp~~Dk~~~~~~l~ 89 (192)
T COG0558 10 KLGNTPNQLTLLRIFLIPLFALLLLLPGLGLLLLALVLFLLAALTDALDGYLARKWGQVSRFGAFLDPVADKLLDAALLL 89 (192)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCccchhcchhhHHHHHHHHHH
Confidence 56789999999999999998887776532234677899999999999999999999999999999999999999999999
Q ss_pred HHhccCCCccccCcc-hhhhHHhHHHHHHHHHHHHHHHHHHHhhccchhhhcccccchHHHHHHHHHHHHHHHhhcCCCC
Q 018312 242 LLCTKPLELPVFGQV-PWLLTVPAIAIIGREITMSAVREWAASQNTRLLEAVAVNNLGKWKTATQMIALTILLTTRDSSI 320 (358)
Q Consensus 242 ~L~~~~l~~~~~g~i-Pw~l~v~ailII~Re~lIs~lR~~~~~~g~~~~~~i~as~lGKvkTalq~val~llLl~~~~~~ 320 (358)
.+.. .+.. |+|.. ++++.||+++++.|.+++..|. ....+++..||.||+.|++++...+......
T Consensus 90 ~l~~-------~~~~~~~~~~---~l~l~r~~~vs~~r~~~~~~g~--~~~~~~~~~gk~~t~~~~~~i~~~l~~~~~~- 156 (192)
T COG0558 90 GLVA-------LGPVSPLWLA---ILILAREILVSYLRALAASLGG--RDYVGASGRGKRKTILQMVALLLLLLGLLLT- 156 (192)
T ss_pred HHHH-------hcccchHHHH---HHHHHHHHHHHHHHHHHHHhcC--CceECcchhhHHHHHHHHHHHHHHHHHhcch-
Confidence 8875 3445 77775 6899999999999999998863 2567899999999999999998888763211
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018312 321 GGPWILVCSGVVLLYISAGLSVWSLVVYMGKISKVLLK 358 (358)
Q Consensus 321 ~~~~~l~~~g~~Ll~iaa~LtiiS~v~Yi~~~~r~l~k 358 (358)
. .....+..+++ +++++++|+++|+...++.+++
T Consensus 157 --~-~~~~~~~~l~~-~~~lt~~s~~~y~~~~~~~~~~ 190 (192)
T COG0558 157 --P-LWLLLGLVLLA-AAVLTLITGIQYLLAALKSLKS 190 (192)
T ss_pred --h-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcc
Confidence 1 11234455556 7899999999999999988764
No 6
>KOG1617 consensus CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase [Lipid transport and metabolism]
Probab=99.96 E-value=5.2e-29 Score=231.97 Aligned_cols=163 Identities=36% Similarity=0.470 Sum_probs=128.4
Q ss_pred CCCCcccccchHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhCCCCCchhhhhhhhHHHHHHH
Q 018312 158 QPSNKILTLPTILTLGRVAAVPLLICTFYVDSWWGRTATTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVA 237 (358)
Q Consensus 158 ~~~~~~~tiPNlLTl~RIiL~pv~~~l~~~~~~~~~~~al~lfilA~lTD~LDG~LAR~~n~~S~fGa~LDPlADKIlil 237 (358)
..+++++|+||+||+.|++.+|+++++ +.+++| ..++.+|++|++|||+|||||||+++.|.+|++|||+|||+++.
T Consensus 62 ~l~~kv~tiPN~Ltl~Ri~a~Pli~~l-ii~~~~--t~A~~~Fa~Ag~TD~lDGyIARk~~l~S~~Gs~LDPlADkvlit 138 (243)
T KOG1617|consen 62 QLKSKVLTIPNMLTLARIAATPLIGYL-IIDENF--TAAFGLFAVAGITDLLDGYIARKMRLGSIAGSVLDPLADKVLIT 138 (243)
T ss_pred cccccccccchHHHHHHHhhhceeeEE-Eecccc--cHHHHHHHHHHhHHHHHHHHHhhccccchhhhccChHHHHHHHH
Confidence 568999999999999999999987765 445544 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCccccCcchhhhHHhHHHHHHHHHHHHHHHHHHHhhccchhhh-------------cccccchHHHHHH
Q 018312 238 ATLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAASQNTRLLEA-------------VAVNNLGKWKTAT 304 (358)
Q Consensus 238 a~li~L~~~~l~~~~~g~iPw~l~v~ailII~Re~lIs~lR~~~~~~g~~~~~~-------------i~as~lGKvkTal 304 (358)
.+++++.+ .+.+|..++ .+|++||+++.+.++|.+.+..+..+. +.+....|++|++
T Consensus 139 ~~~l~m~~-------~~liPvpL~---~~IIgRDV~Lv~~~~y~ry~~l~~p~~~a~~f~~~~~~~~l~~~~~Sk~ntv~ 208 (243)
T KOG1617|consen 139 CLTLCMVY-------ADLIPVPLA---SIIIGRDVLLVAGAFYLRYQNLKLPYTLAVFFNPWKAATQLTPLLASKVNTVF 208 (243)
T ss_pred HHHHHHHh-------hhccCcchh---hhhhhhHHHHHHHHHHHHHhcCCCchhHHHhcchhhhhhhccchhhhhhhHHH
Confidence 99998764 466776654 689999999999999999877432222 2355677788888
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018312 305 QMIALTILLTTRDSSIGGPWILVCSGVVLLYISAGLSVWSLVVY 348 (358)
Q Consensus 305 q~val~llLl~~~~~~~~~~~l~~~g~~Ll~iaa~LtiiS~v~Y 348 (358)
|++.++.-++.....+.. ..++++|..+|
T Consensus 209 ql~lva~~ll~~~~~~s~---------------~~ttv~~~~~y 237 (243)
T KOG1617|consen 209 QLTLVAAGLLYPLFGYSD---------------ATTTVYSTYSY 237 (243)
T ss_pred HHHHHHHhHHHHhcCCcc---------------hhhHHHHHHHH
Confidence 887776665543222211 45567777777
No 7
>PF01066 CDP-OH_P_transf: CDP-alcohol phosphatidyltransferase; InterPro: IPR000462 A number of phosphatidyltransferases, which are all involved in phospholipid biosynthesis and that share the property of catalyzing the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond share a conserved sequence region [, ]. These enzymes are proteins of 200 to 400 amino acid residues. The conserved region contains three aspartic acid residues and is located in the N-terminal section of the sequences.; GO: 0016780 phosphotransferase activity, for other substituted phosphate groups, 0008654 phospholipid biosynthetic process, 0016020 membrane
Probab=99.67 E-value=3.3e-16 Score=128.54 Aligned_cols=75 Identities=29% Similarity=0.344 Sum_probs=66.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhCCCCCchhhhhhhhHHHHHHHHHH
Q 018312 164 LTLPTILTLGRVAAVPLLICTFYVDSWWGRTATTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAATL 240 (358)
Q Consensus 164 ~tiPNlLTl~RIiL~pv~~~l~~~~~~~~~~~al~lfilA~lTD~LDG~LAR~~n~~S~fGa~LDPlADKIlila~l 240 (358)
+..||.+|+.|++++++..++++..++ ...+.+++.++.++|++||++||++|++|++|+++|+++|++......
T Consensus 2 ~~~pN~iT~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~D~~DG~lAR~~~~~S~~G~~lD~~~D~i~~~~~~ 76 (101)
T PF01066_consen 2 WITPNAITLLRLLLGFLAALLLLQGRP--LLLAALLLFLAFLLDGLDGWLARRRNQSSPFGAYLDSVADRISFVALP 76 (101)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHccH--HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHhHHhHHHHHHHHH
Confidence 568999999999999988887776654 356788889999999999999999999999999999999999988776
No 8
>KOG3240 consensus Phosphatidylinositol synthase [Lipid transport and metabolism]
Probab=99.43 E-value=9.4e-13 Score=121.55 Aligned_cols=143 Identities=20% Similarity=0.265 Sum_probs=100.5
Q ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhCCCCCchhhhhhhhHHHHHHHH
Q 018312 159 PSNKILTLPTILTLGRVAAVPLLICTFYVDSWWGRTATTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAA 238 (358)
Q Consensus 159 ~~~~~~tiPNlLTl~RIiL~pv~~~l~~~~~~~~~~~al~lfilA~lTD~LDG~LAR~~n~~S~fGa~LDPlADKIlila 238 (358)
....++.+||++...|+++..+..++...+. ..+.+++.+++..|.+|||.||++||+|+||+.||.+.||....+
T Consensus 8 ~~~v~~~iPN~iGY~RI~laiisf~vm~~~p----~~~~~lY~~S~lLDAfDG~aAR~~NQ~S~fGA~LDmvTDR~st~~ 83 (218)
T KOG3240|consen 8 KESVFLYIPNLIGYMRIVLAILSFYVMSSNP----TTFSVLYLLSSLLDAFDGWAARKLNQVSRFGAMLDMVTDRCSTAC 83 (218)
T ss_pred CCceEEEecchhhHHHHHHHHHHHHHhccCc----cHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHhhhHH
Confidence 3466889999999999999988776544332 456789999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCccccCcchhhhHHhHHHHHHHHHHHHHHHHHHHh-hccc--hhhhc-----------ccccchHHHHHH
Q 018312 239 TLVLLCTKPLELPVFGQVPWLLTVPAIAIIGREITMSAVREWAAS-QNTR--LLEAV-----------AVNNLGKWKTAT 304 (358)
Q Consensus 239 ~li~L~~~~l~~~~~g~iPw~l~v~ailII~Re~lIs~lR~~~~~-~g~~--~~~~i-----------~as~lGKvkTal 304 (358)
+++.++++ .|-+..+ +-+.+.-|+.-..+.++..- .|++ ....- .-..+|-.-..-
T Consensus 84 LL~~L~~~---------Yp~~l~~-fqL~~~lDiaSHwlhm~st~l~G~sSHK~v~~~~n~llrLYY~~r~vL~~~C~~n 153 (218)
T KOG3240|consen 84 LLVFLCQF---------YPPYLVF-FQLSMALDIASHWLHMHSTVLVGKSSHKDVDDSTNWLLRLYYTNRDVLFTICAGN 153 (218)
T ss_pred HHHHHHHH---------cccHHHH-HHHHHHHHHHHHHHHHHHHHHhccccccccccccceeEEEEecCcceehhhhhhH
Confidence 99988853 4533321 23446667776665544331 2311 00110 123456666666
Q ss_pred HHHHHHHHHhh
Q 018312 305 QMIALTILLTT 315 (358)
Q Consensus 305 q~val~llLl~ 315 (358)
++..+.+.+..
T Consensus 154 E~Fyi~LYl~~ 164 (218)
T KOG3240|consen 154 ELFYILLYLLA 164 (218)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 9
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase. This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein.
Probab=99.17 E-value=8.9e-10 Score=98.18 Aligned_cols=66 Identities=26% Similarity=0.280 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhCCCCCchhhhhhhhHHHHHHHHH
Q 018312 171 TLGRVAAVPLLICTFYVDSWWGRTATTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAAT 239 (358)
Q Consensus 171 Tl~RIiL~pv~~~l~~~~~~~~~~~al~lfilA~lTD~LDG~LAR~~n~~S~fGa~LDPlADKIlila~ 239 (358)
|+..++++...++..+.++. .++.++++++++.|++||.+||++|.+|++|+.||+++|++.....
T Consensus 1 T~~n~~~g~~ai~~~~~~~~---~~a~~~l~~a~~~D~~DG~vAR~~~~~s~~G~~lDsl~D~vsfgva 66 (151)
T TIGR00473 1 TMLNAFSGFLSILSLLRYTI---VRACFLILLSMFFDFLDGRVARKTNRVSDFGKELDSLADVVSFGVA 66 (151)
T ss_pred ChHHHHHHHHHHHHHHHCcH---HHHHHHHHHHHHHHHhhHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Confidence 45666666655554444432 4567788889999999999999999999999999999999975543
No 10
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=98.96 E-value=1.7e-08 Score=96.03 Aligned_cols=71 Identities=31% Similarity=0.395 Sum_probs=60.1
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhCCCCCchhhhhhhhHHHHH
Q 018312 162 KILTLPTILTLGRVAAVPLLICTFYVDSWWGRTATTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLM 235 (358)
Q Consensus 162 ~~~tiPNlLTl~RIiL~pv~~~l~~~~~~~~~~~al~lfilA~lTD~LDG~LAR~~n~~S~fGa~LDPlADKIl 235 (358)
....+||++|.+-++++...+.....+++ ..+..+.++|++.|.+||++||++|.+|.+|+.||.+||-+.
T Consensus 7 ~~~~~pn~iT~~~~~~G~~sI~~a~~~~~---~~a~~~i~lA~i~DglDG~VAR~~~~~s~~G~~lDSLaD~Vs 77 (234)
T COG1183 7 RLYLLPNLITALGLFLGLLSIVAALEGRF---EAALLLILLALILDGLDGRVARKLNAKSAFGAELDSLADLVS 77 (234)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHcccchHHHHhcCCcchHHHHHhHHHHHHH
Confidence 35578999999999988877665444433 456777788999999999999999999999999999999995
No 11
>PLN02359 ethanolaminephosphotransferase
Probab=98.57 E-value=2.3e-06 Score=86.88 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=58.3
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHh--c---c---chhHHHHHHHHHHHHHHHHHhHHHHhhCCCCCchhhhhhhhHHH
Q 018312 162 KILTLPTILTLGRVAAVPLLICTFYV--D---S---WWGRTATTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADK 233 (358)
Q Consensus 162 ~~~tiPNlLTl~RIiL~pv~~~l~~~--~---~---~~~~~~al~lfilA~lTD~LDG~LAR~~n~~S~fGa~LDPlADK 233 (358)
|.+-.||++|+..+++..+...+++. . + .|......+...+....|.+||..|||+|+.|++|+.+|--+|+
T Consensus 42 P~~~aPN~iTl~G~~~~~~~~~~~~~~~p~~~~~~P~w~~~~~a~~lfly~~~D~~DGkqARrt~~ssplGelfDHg~D~ 121 (389)
T PLN02359 42 PLWMPPNMITLMGFMFLLTSALLGYIYSPHLDTPPPRWVHFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCDA 121 (389)
T ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHhCcccccCCccHHHHHHHHHHHHHHHHHhccHHHHhhcCCCCCchhHHhhhhHH
Confidence 33557999999998776544443322 1 1 13333444555668899999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 018312 234 LMVAATLVLL 243 (358)
Q Consensus 234 Ilila~li~L 243 (358)
+...-..+.+
T Consensus 122 ~~~~~~~~~~ 131 (389)
T PLN02359 122 LACAFETMAF 131 (389)
T ss_pred HHHHHHHHHH
Confidence 9644333333
No 12
>PTZ00307 ethanolamine phosphotransferase; Provisional
Probab=98.50 E-value=1.1e-06 Score=89.90 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=57.9
Q ss_pred cccccchHHHHHHHHHHHHHHHHH--Hh---cc---chhHHHHHHHHHHHHHHHHHhHHHHhhCCCCCchhhhhhhhHHH
Q 018312 162 KILTLPTILTLGRVAAVPLLICTF--YV---DS---WWGRTATTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADK 233 (358)
Q Consensus 162 ~~~tiPNlLTl~RIiL~pv~~~l~--~~---~~---~~~~~~al~lfilA~lTD~LDG~LAR~~n~~S~fGa~LDPlADK 233 (358)
+.+-.||+||+..+++..+...+. +. ++ .|....+.++..+....|.+||..|||+|+.|++|+++|-.+|.
T Consensus 58 P~~laPN~ITl~G~~~~~~~~~~~~~~~~~~~~~~p~w~~~~~a~~lfly~~~D~lDGkqARrt~~sSplGelfDhg~D~ 137 (417)
T PTZ00307 58 PMTVAPNCITFTGFLIGMSSAALLLYFYFFEEGVYPSWVLYYAAFALFAYQTLDAIDGKQARRTGTGSPLGELFDHGCDA 137 (417)
T ss_pred cCCCCCCeeeHHhHHHHHHHHHHHHHhcccccCCCccHHHHHHHHHHHHHHHHhhcchHHhhhcCCCCCchhHHHhhhhH
Confidence 344579999999987654433321 11 11 12223344455568999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 018312 234 LMVAATLVLLC 244 (358)
Q Consensus 234 Ilila~li~L~ 244 (358)
+......+.++
T Consensus 138 ~~~~~~~~~~~ 148 (417)
T PTZ00307 138 FLTPFVLLNVS 148 (417)
T ss_pred HHHHHHHHHHH
Confidence 97655554443
No 13
>KOG2877 consensus sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid transport and metabolism]
Probab=98.02 E-value=6.1e-05 Score=76.28 Aligned_cols=96 Identities=21% Similarity=0.363 Sum_probs=63.0
Q ss_pred CcccccchHHHHHHHHHHHHHHHH--HHhc---c---chhH-HHHHHHHHHHHHHHHHhHHHHhhCCCCCchhhhhhhhH
Q 018312 161 NKILTLPTILTLGRVAAVPLLICT--FYVD---S---WWGR-TATTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVA 231 (358)
Q Consensus 161 ~~~~tiPNlLTl~RIiL~pv~~~l--~~~~---~---~~~~-~~al~lfilA~lTD~LDG~LAR~~n~~S~fGa~LDPlA 231 (358)
-|.+--||+||+..+++..+-..+ +|.. + .|.. ..++.+|+ .--.|.+||.=|||+|+.|++|+.+|==+
T Consensus 47 ~P~wmAPNlITL~Gl~~~v~~~Ll~~~ydP~~~~~~P~W~y~a~alglFl-YqTlDaiDGkQARRTnsSsPLGELFDHG~ 125 (389)
T KOG2877|consen 47 FPLWMAPNLITLIGLIFNVITVLLLLYYDPNLDEPAPRWTYFAAALGLFL-YQTLDAIDGKQARRTNSSSPLGELFDHGC 125 (389)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHhcCcccCCCCCcHHHHHHHHHHHH-HHhcccccchhhccCCCCCCcHhhhcccc
Confidence 456778999999998654333222 2211 1 1222 23444444 67789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCccccCcchhhhH
Q 018312 232 DKLMVAATLVLLCTKPLELPVFGQVPWLLT 261 (358)
Q Consensus 232 DKIlila~li~L~~~~l~~~~~g~iPw~l~ 261 (358)
|-+.-.-..+..+.. ...|..|.|+.
T Consensus 126 DS~stvf~~l~~~s~----~~~G~~~~~~~ 151 (389)
T KOG2877|consen 126 DSISTVFVTLAVCSA----FGLGTSPYWLF 151 (389)
T ss_pred hhHHHHHHHHHHHHH----hCCCCCcchHH
Confidence 998654444444431 23566665554
No 14
>COG5050 EPT1 sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases [Lipid metabolism]
Probab=97.40 E-value=0.00056 Score=68.45 Aligned_cols=82 Identities=23% Similarity=0.385 Sum_probs=54.5
Q ss_pred cccccchHHHHHHHHHHHHHH-HHHHhc------cc-hh-HHHHHHHHHHHHHHHHHhHHHHhhCCCCCchhhhhhhhHH
Q 018312 162 KILTLPTILTLGRVAAVPLLI-CTFYVD------SW-WG-RTATTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVAD 232 (358)
Q Consensus 162 ~~~tiPNlLTl~RIiL~pv~~-~l~~~~------~~-~~-~~~al~lfilA~lTD~LDG~LAR~~n~~S~fGa~LDPlAD 232 (358)
+.+--||+||++.++....-. ..++.+ .+ |. ..+++.+|+ ----|.+||.=|||+|+.|++|+.+|==.|
T Consensus 42 P~~mAPNliTL~Gl~fiv~nvlt~l~ydp~~~~~~~~w~yfs~alg~Fl-YqtfD~lDG~qARRTGt~spLGeLFDH~vD 120 (384)
T COG5050 42 PYWMAPNLITLCGLIFIVANVLTTLYYDPCLSVDGPRWTYFSYALGLFL-YQTFDALDGRQARRTGTGSPLGELFDHGVD 120 (384)
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHHHHHHHH-HhhccccccHhhhcCCCCCCcHHHHhhhHH
Confidence 456679999999876542222 222222 11 11 123344443 567899999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 018312 233 KLMVAATLVLLC 244 (358)
Q Consensus 233 KIlila~li~L~ 244 (358)
-+-..-..+.++
T Consensus 121 sint~l~~i~~~ 132 (384)
T COG5050 121 SINTTLSAIIFV 132 (384)
T ss_pred HHHHHHHHHHHH
Confidence 986544444443
No 15
>PLN03039 ethanolaminephosphotransferase; Provisional
Probab=95.30 E-value=0.027 Score=56.53 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhCCCCCchhhhhhhhHHHHHHH
Q 018312 196 TTSIFIAAAVTDWLDGYIARKMRLGSTFGAFLDPVADKLMVA 237 (358)
Q Consensus 196 al~lfilA~lTD~LDG~LAR~~n~~S~fGa~LDPlADKIlil 237 (358)
++.+| +..-.|.+||.=|||+|+.|++|+.+|==+|-+...
T Consensus 33 a~~lf-~YqtlD~~DGkqARRt~~sspLGelfDHg~Ds~~~~ 73 (337)
T PLN03039 33 GLLLF-LYQTFDAVDGKQARRTNSSSPLGELFDHGCDALACA 73 (337)
T ss_pred HHHHH-HHHHHhhcchhhhcccCCCCCchHhHhcchhHHHHH
Confidence 33444 466779999999999999999999999999998543
No 16
>PF03116 NQR2_RnfD_RnfE: NQR2, RnfD, RnfE family; InterPro: IPR004338 This family of proteins describes the Nqr2 (NqrB) subunit of the bacterial 6-subunit sodium-translocating NADH-ubiquinone oxidoreductase (i.e. a respiration linked sodium pump). In Vibrio cholerae, it negatively regulates the expression of virulence factors through inhibiting (by an unknown mechanism) the transcription of the transcriptional activator ToxT []. The family also includes RnfD, which is involved in nitrogen fixation. The similarity of RnfD to NADH-ubiquinone oxidoreductases was previously noted [].; GO: 0006810 transport, 0016020 membrane
Probab=48.23 E-value=2.8e+02 Score=27.83 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhC-CCCCchhhhhhhhHHHHHHHHHHHHH
Q 018312 165 TLPTILTLGRVAAVPLLICTFYVDSWWGRTATTSIFIAAAVTDWLDGYIARKM-RLGSTFGAFLDPVADKLMVAATLVLL 243 (358)
Q Consensus 165 tiPNlLTl~RIiL~pv~~~l~~~~~~~~~~~al~lfilA~lTD~LDG~LAR~~-n~~S~fGa~LDPlADKIlila~li~L 243 (358)
++-+.....=+++.|.+++..+..+.......++..+.+.++|++..++-+|- +...+.++ .+.++++++
T Consensus 14 ~~~~~M~~VilaLlP~~~~~~~~fG~~~l~~~~~av~~a~l~E~l~~~l~~~~~~~~~d~sa---------~vTglLlal 84 (313)
T PF03116_consen 14 STQKIMWDVILALLPALLASIYFFGFRALLVILVAVLTAVLAEALFAKLRKRPIPTLKDLSA---------VVTGLLLAL 84 (313)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccH---------HHHHHHHHH
Confidence 34444444556667777766655444322333444556788999988775554 33444433 355666666
Q ss_pred hccCCCccccCcchhhhH
Q 018312 244 CTKPLELPVFGQVPWLLT 261 (358)
Q Consensus 244 ~~~~l~~~~~g~iPw~l~ 261 (358)
. +--.+|||+.
T Consensus 85 ~-------LP~~~P~w~v 95 (313)
T PF03116_consen 85 L-------LPPSVPLWVV 95 (313)
T ss_pred h-------CCCCCcHHHH
Confidence 4 2345798875
No 17
>TIGR01937 nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit. This model represents the NqrB subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=35.89 E-value=5.5e+02 Score=27.11 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=14.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhc
Q 018312 165 TLPTILTLGRVAAVPLLICTFYVD 188 (358)
Q Consensus 165 tiPNlLTl~RIiL~pv~~~l~~~~ 188 (358)
++-.+....=+++.|.+++-+|.-
T Consensus 50 ~~~riM~~VilALlPa~l~~iy~f 73 (413)
T TIGR01937 50 DSKRWMILVVIALFPAMFFGMYNV 73 (413)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566667778777665533
No 18
>KOG1617 consensus CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase [Lipid transport and metabolism]
Probab=34.17 E-value=51 Score=32.13 Aligned_cols=31 Identities=32% Similarity=0.189 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018312 328 CSGVVLLYISAGLSVWSLVVYMGKISKVLLK 358 (358)
Q Consensus 328 ~~g~~Ll~iaa~LtiiS~v~Yi~~~~r~l~k 358 (358)
..+..+++.....+.++...|...-||.+.|
T Consensus 212 lva~~ll~~~~~~s~~~ttv~~~~~yka~~~ 242 (243)
T KOG1617|consen 212 LVAAGLLYPLFGYSDATTTVYSTYSYKALKK 242 (243)
T ss_pred HHHHhHHHHhcCCcchhhHHHHHHHHHHHhc
Confidence 3444555556666667777777777776654
No 19
>PF02654 CobS: Cobalamin-5-phosphate synthase; InterPro: IPR003805 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CobS protein, a cobalamin-5-phosphate synthase that catyalzes the reactions: Adenosylcobinamide-GDP + alpha-ribazole-5'-P = adenosylcobalamin-5'-phosphate + GMP Adenosylcobinamide-GDP + alpha-ribazole = adenosylcobalamin + GMP The protein product from these catalyses is associated with a large complex of proteins and is induced by cobinamide. CobS is involved in part III of cobalamin biosynthesis, one of the late steps in adenosylcobalamin synthesis that, together with CobU, CobT, and CobC proteins, defines the nucleotide loop assembly pathway [, ].; GO: 0008818 cobalamin 5'-phosphate synthase activity, 0009236 cobalamin biosynthetic process
Probab=33.75 E-value=1.3e+02 Score=28.40 Aligned_cols=24 Identities=33% Similarity=0.482 Sum_probs=17.8
Q ss_pred HHHHHHHhHHHHhhCCCC-------Cchhhh
Q 018312 203 AAVTDWLDGYIARKMRLG-------STFGAF 226 (358)
Q Consensus 203 A~lTD~LDG~LAR~~n~~-------S~fGa~ 226 (358)
=++.|..||..+++.++. |+.|.+
T Consensus 73 DGlaD~~Dgl~s~~~~er~LeIMKDsriG~~ 103 (235)
T PF02654_consen 73 DGLADTADGLFSGRDRERRLEIMKDSRIGAF 103 (235)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhCCCCChH
Confidence 368999999999776654 566654
No 20
>PRK05349 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=30.97 E-value=6.5e+02 Score=26.50 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=15.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHh
Q 018312 164 LTLPTILTLGRVAAVPLLICTFYV 187 (358)
Q Consensus 164 ~tiPNlLTl~RIiL~pv~~~l~~~ 187 (358)
.++-.+....=+++.|.+++-+|.
T Consensus 51 ~~~~riM~~ViiALlPa~l~~iy~ 74 (405)
T PRK05349 51 IDLKRIMITVWLALFPAMFFGMYN 74 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667778877766553
No 21
>TIGR01946 rnfD electron transport complex, RnfABCDGE type, D subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=24.16 E-value=6.6e+02 Score=25.54 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhCCC--CCchhhhhhhhHHHHHHHHHHHHHh
Q 018312 167 PTILTLGRVAAVPLLICTFYVDSWWGRTATTSIFIAAAVTDWLDGYIARKMRL--GSTFGAFLDPVADKLMVAATLVLLC 244 (358)
Q Consensus 167 PNlLTl~RIiL~pv~~~l~~~~~~~~~~~al~lfilA~lTD~LDG~LAR~~n~--~S~fGa~LDPlADKIlila~li~L~ 244 (358)
-++.--.=+++.|.+++.+|.-+.......++..+.+.++|.+=-++-||-.. ..+.++. +.+.++++.
T Consensus 11 ~~iM~~VllALlP~~~~~i~~fG~~al~~~~~~v~~av~~E~l~~~l~~k~~~~~~~D~Sa~---------vTglLlal~ 81 (327)
T TIGR01946 11 RKIMRDVLIALLPGLAAQVYFFGWGTLIQIALAILTALILEAAILKLRKRSIKAFLKDGSAI---------LTGLLLAVA 81 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCccHH---------HHHHHHHHH
Confidence 33333333556777666555444322222233444566777776666443221 2244433 456666665
Q ss_pred ccCCCccccCcchhhhH
Q 018312 245 TKPLELPVFGQVPWLLT 261 (358)
Q Consensus 245 ~~~l~~~~~g~iPw~l~ 261 (358)
. --..|||+.
T Consensus 82 l-------P~~~P~W~~ 91 (327)
T TIGR01946 82 I-------PPLAPWWMI 91 (327)
T ss_pred c-------CCCCcHHHH
Confidence 2 345799986
No 22
>PRK14773 lipoprotein signal peptidase; Provisional
Probab=23.26 E-value=4.3e+02 Score=24.84 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHhHHH
Q 018312 169 ILTLGRVAAVPLLICTFYVD--SWWGRTATTSIFIAAAVTDWLDGYI 213 (358)
Q Consensus 169 lLTl~RIiL~pv~~~l~~~~--~~~~~~~al~lfilA~lTD~LDG~L 213 (358)
.+++.|++++.++.+.+... ......+++.+.+-.++...+|-..
T Consensus 96 ~l~~~~ivav~~i~~~~~k~~~~~~~~~ialsLIlgGAiGNlIDRi~ 142 (192)
T PRK14773 96 FFTLVSLAAVAFILHYYRKLRQEQRYLQVALALVLGGAVGNFVDRLA 142 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhHHHHhh
Confidence 57888887766655544322 1222346677778889999999853
No 23
>PRK00816 rnfD electron transport complex protein RnfD; Reviewed
Probab=22.82 E-value=6.8e+02 Score=25.74 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhCCC--CCchhhhhhhhHHHHHHHHHHHHHhccCCCccc
Q 018312 175 VAAVPLLICTFYVDSWWGRTATTSIFIAAAVTDWLDGYIARKMRL--GSTFGAFLDPVADKLMVAATLVLLCTKPLELPV 252 (358)
Q Consensus 175 IiL~pv~~~l~~~~~~~~~~~al~lfilA~lTD~LDG~LAR~~n~--~S~fGa~LDPlADKIlila~li~L~~~~l~~~~ 252 (358)
+++.|.+++.+|.-+.......++..+.+.+++++=-++-||-.. ..+..+ .+.+.++++. +
T Consensus 25 lALlP~~~~~i~~fG~~al~~~~~~v~~av~~E~l~~k~~~k~~~~~l~D~Sa---------~vTglLlal~-------l 88 (350)
T PRK00816 25 LAALPGIAAQTYFFGWGTLIQILLAIVTALLAEAAVLKLRKRPVAATLKDNSA---------LLTALLLAVS-------I 88 (350)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCcccH---------HHHHHHHHHh-------c
Confidence 456777666555444322222223334466777775555433221 233332 3455666665 2
Q ss_pred cCcchhhhH
Q 018312 253 FGQVPWLLT 261 (358)
Q Consensus 253 ~g~iPw~l~ 261 (358)
--..|||+.
T Consensus 89 Pp~~P~W~~ 97 (350)
T PRK00816 89 PPLAPWWMI 97 (350)
T ss_pred CCCCcHHHH
Confidence 345799986
No 24
>PF00242 DNA_pol_viral_N: DNA polymerase (viral) N-terminal domain; InterPro: IPR000201 This domain is at the N terminus of hepadnavirus P proteins and covers the so-called terminal protein and the spacer region of the protein. This domain is always associated with IPR000477 from INTERPRO and IPR001462 from INTERPRO.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication
Probab=20.21 E-value=5.3e+02 Score=26.95 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.1
Q ss_pred hhhhhccCcccccee
Q 018312 13 TMAASLSATPYKQLV 27 (358)
Q Consensus 13 ~~~~~~~~~~~~~~~ 27 (358)
+-.|+|||+||.|-.
T Consensus 168 ~~~~tF~G~PYsWEq 182 (379)
T PF00242_consen 168 THSATFKGSPYSWEQ 182 (379)
T ss_pred ceeEeeecCCcchhh
Confidence 346899999998865
Done!