Query 018312
Match_columns 358
No_of_seqs 157 out of 1709
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 13:16:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1onv_B Serine phosphatase FCP1 19.6 22 0.00075 27.9 -0.1 37 80-117 29-66 (83)
2 2lic_A Vitellogenin; lipid tra 10.9 1.5E+02 0.005 19.5 2.0 20 93-112 7-26 (35)
3 3arc_K Photosystem II reaction 7.4 1.9E+02 0.0066 19.6 1.6 19 225-243 7-25 (37)
4 2k1g_A Lipoprotein SPR; soluti 6.8 1.9E+02 0.0065 24.1 1.7 16 12-27 10-25 (135)
5 2jyx_A Lipoprotein SPR; soluti 5.4 2.7E+02 0.0091 22.8 1.9 16 12-27 10-25 (136)
6 2cx6_A Hypothetical protein YH 5.2 3.3E+02 0.011 20.9 2.2 24 212-235 20-43 (90)
7 3gt2_A Putative uncharacterize 5.0 2.3E+02 0.0078 23.4 1.2 16 12-27 20-35 (142)
8 2za4_B Barstar; protein-protei 4.2 4E+02 0.014 20.2 1.9 25 212-236 20-44 (90)
9 2jxf_A NS4B(40-69), genome pol 3.6 4.4E+02 0.015 17.0 1.4 11 340-350 16-26 (30)
10 2bnl_A Modulator protein RSBR; 3.0 5.9E+02 0.02 21.6 2.0 34 205-239 46-79 (136)
No 1
>1onv_B Serine phosphatase FCP1A; transcription factor, human general transcription factor TFIIF, RAP74, RNA polymerase II CTD phosphatase; NMR {Homo sapiens}
Probab=19.59 E-value=22 Score=27.87 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=2.0
Q ss_pred CCcccce-eecCcccccCCCCCCcCCCCCCcccccCCCC
Q 018312 80 LPFSGFR-YRSPKLYLSSRTGDTTTRSSTNKAEVTGSDP 117 (358)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (358)
+...|-| -|+||+-.+....++- +|..+|.|-.|+.|
T Consensus 29 ~~~~g~rgpRGhkrk~~e~d~~s~-~s~~ssnEDeGSss 66 (83)
T 1onv_B 29 RSAAGGRGPRGHKRKLNEEDAASE-SSRESSNEDEGSSS 66 (83)
T ss_dssp -----------------------------------CCCS
T ss_pred hhcccccCCccccccccccccccc-ccccccccccccch
Confidence 3335666 8999999866644433 33333444455544
No 2
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=10.91 E-value=1.5e+02 Score=19.48 Aligned_cols=20 Identities=35% Similarity=0.310 Sum_probs=12.3
Q ss_pred cccCCCCCCcCCCCCCcccc
Q 018312 93 YLSSRTGDTTTRSSTNKAEV 112 (358)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ 112 (358)
.+|-||.-++++||-+++|-
T Consensus 7 ilnlrtdistssssisssee 26 (35)
T 2lic_A 7 ILNLRTDISTSSSSISSSEE 26 (35)
T ss_dssp SSSCSSSSCSCSSCCSTTCS
T ss_pred HHHhhhcccccccccccccc
Confidence 34566766666666666654
No 3
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=7.38 E-value=1.9e+02 Score=19.58 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=13.3
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 018312 225 AFLDPVADKLMVAATLVLL 243 (358)
Q Consensus 225 a~LDPlADKIlila~li~L 243 (358)
+.+||+.|-+=++.+++.+
T Consensus 7 a~f~PivDvmPiIPv~f~l 25 (37)
T 3arc_K 7 AIFDPLVDVLPVIPVLFLA 25 (37)
T ss_dssp GGGHHHHHHGGGHHHHHHH
T ss_pred hhhchHHHHhchHHHHHHH
Confidence 6789999977666655443
No 4
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=6.80 E-value=1.9e+02 Score=24.12 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=13.1
Q ss_pred HhhhhhccCcccccee
Q 018312 12 LTMAASLSATPYKQLV 27 (358)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (358)
+..|..+.|+||+|--
T Consensus 10 i~~a~~~lG~PY~wGG 25 (135)
T 2k1g_A 10 MDQYADWKGVRYRLGG 25 (135)
T ss_dssp HHHHHHHTTCCCCSSC
T ss_pred HHHHHHHCCCCccCCC
Confidence 4667889999999964
No 5
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=5.44 E-value=2.7e+02 Score=22.80 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=13.4
Q ss_pred HhhhhhccCcccccee
Q 018312 12 LTMAASLSATPYKQLV 27 (358)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (358)
+..|.++.|+||+|--
T Consensus 10 ~~~A~~~lG~pY~~Gg 25 (136)
T 2jyx_A 10 MDQYADWKGVRYRLGG 25 (136)
T ss_dssp HHHHHHHSSCCBCTTC
T ss_pred HHHHHHhCCCCccCCC
Confidence 5678889999999965
No 6
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=5.20 E-value=3.3e+02 Score=20.93 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.5
Q ss_pred HHHhhCCCCCchhhhhhhhHHHHH
Q 018312 212 YIARKMRLGSTFGAFLDPVADKLM 235 (358)
Q Consensus 212 ~LAR~~n~~S~fGa~LDPlADKIl 235 (358)
.+|++++...-+|+=||.+.|-+.
T Consensus 20 ~~~~~~~~p~~fG~NlDAL~D~Lt 43 (90)
T 2cx6_A 20 DFSQTFGLAKDKVRDLDSLWDVLM 43 (90)
T ss_dssp HHHHHTTCCTTSCSSHHHHHHHHH
T ss_pred HHHHHhCCchhhCCCHHHHHHHHc
Confidence 578999999999999999999665
No 7
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=5.00 E-value=2.3e+02 Score=23.41 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=12.9
Q ss_pred HhhhhhccCcccccee
Q 018312 12 LTMAASLSATPYKQLV 27 (358)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (358)
+..|.++.|+||.|--
T Consensus 20 i~~A~~~lG~pY~wGG 35 (142)
T 3gt2_A 20 IARGLSQRGVPFSWAG 35 (142)
T ss_dssp HHHHHTTTTCBBCTTC
T ss_pred HHHHHHHCCCCeeCCC
Confidence 4567789999999964
No 8
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=4.19 E-value=4e+02 Score=20.21 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.9
Q ss_pred HHHhhCCCCCchhhhhhhhHHHHHH
Q 018312 212 YIARKMRLGSTFGAFLDPVADKLMV 236 (358)
Q Consensus 212 ~LAR~~n~~S~fGa~LDPlADKIli 236 (358)
.+++.++...-+|+=+|.+.|-+.-
T Consensus 20 ~l~~~l~~P~~fG~NlDAL~D~L~~ 44 (90)
T 2za4_B 20 TLKKELALPEYYGENLDALWAALTG 44 (90)
T ss_dssp HHHHHTTCCTTCCCSHHHHHHHHHH
T ss_pred HHHHHhCCCcccCCCHHHHHHHhcC
Confidence 5789999988999999999997765
No 9
>2jxf_A NS4B(40-69), genome polyprotein; membrane associated segment, acetylation, apoptosis, ATP- binding, capsid protein, cytoplasm, endoplasmic reticulum; NMR {Synthetic}
Probab=3.64 E-value=4.4e+02 Score=16.99 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=8.0
Q ss_pred HHHHHHHHHHH
Q 018312 340 LSVWSLVVYMG 350 (358)
Q Consensus 340 LtiiS~v~Yi~ 350 (358)
--.+|++||+-
T Consensus 16 wNfvSGIQYLa 26 (30)
T 2jxf_A 16 WNFISGIQYLA 26 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 35678999974
No 10
>2bnl_A Modulator protein RSBR; stress-response, stress response, phosphorylation; 2.0A {Bacillus subtilis}
Probab=3.02 E-value=5.9e+02 Score=21.61 Aligned_cols=34 Identities=6% Similarity=0.061 Sum_probs=29.0
Q ss_pred HHHHHhHHHHhhCCCCCchhhhhhhhHHHHHHHHH
Q 018312 205 VTDWLDGYIARKMRLGSTFGAFLDPVADKLMVAAT 239 (358)
Q Consensus 205 lTD~LDG~LAR~~n~~S~fGa~LDPlADKIlila~ 239 (358)
--|++|=-++.-.+ ...+.+.||..|+|+..++-
T Consensus 46 s~Efv~lils~i~~-~~~~~e~l~~Faer~VqlGw 79 (136)
T 2bnl_A 46 SKEYIDILLLSVKD-ENAAESQISELALRAVQIGL 79 (136)
T ss_dssp HHHHHHHHHTCSSC-TTTTHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHccc-chhHHHHHHHHHHHHHHcCC
Confidence 45788888888888 99999999999999987654
Done!