Query 018312
Match_columns 358
No_of_seqs 157 out of 1709
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 13:16:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018312.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018312hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtk1 f.23.36.1 (K:10-46) Ph 7.3 82 0.0059 19.7 1.3 19 225-243 7-25 (37)
2 d2al6a2 b.55.1.5 (A:254-363) F 5.1 1.1E+02 0.0082 23.2 1.3 12 203-214 85-96 (110)
3 d2cx6a1 c.9.1.1 (A:1-90) Hypot 2.9 3.2E+02 0.023 19.5 2.2 24 212-235 20-43 (90)
4 d2gysa3 b.1.2.1 (A:218-316) Co 2.6 1.2E+02 0.0088 22.7 -0.7 18 53-70 67-84 (99)
5 d1vlya2 d.250.1.1 (A:3-243) Hy 2.3 2.9E+02 0.021 21.3 1.3 24 111-134 216-239 (241)
6 d1twua_ d.32.1.8 (A:) Hypothet 2.1 2.3E+02 0.017 20.1 0.3 10 46-55 118-127 (137)
7 d1ay7b_ c.9.1.1 (B:) Barstar ( 1.9 4.8E+02 0.035 18.2 2.0 24 212-235 19-42 (89)
8 d2axtm1 f.23.35.1 (M:1-36) Pho 1.8 8.6E+02 0.063 14.6 3.0 15 294-308 3-17 (36)
9 d1qwta_ b.26.1.3 (A:) Interfer 1.8 4E+02 0.029 22.2 1.5 14 47-60 33-46 (239)
10 d1tnra_ b.22.1.1 (A:) Tumor ne 1.8 2.7E+02 0.019 20.8 0.2 28 64-91 2-37 (144)
No 1
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.29 E-value=82 Score=19.71 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=13.2
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 018312 225 AFLDPVADKLMVAATLVLL 243 (358)
Q Consensus 225 a~LDPlADKIlila~li~L 243 (358)
+.+||+.|-+=++.+++.+
T Consensus 7 ~~f~PivdvlPiIPv~f~l 25 (37)
T d2axtk1 7 AIFDPLVDVLPVIPVLFLA 25 (37)
T ss_dssp GGCHHHHHHGGGHHHHHHH
T ss_pred hhhchHHHHhccHHHHHHH
Confidence 5789999977666655443
No 2
>d2al6a2 b.55.1.5 (A:254-363) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.06 E-value=1.1e+02 Score=23.22 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=9.4
Q ss_pred HHHHHHHhHHHH
Q 018312 203 AAVTDWLDGYIA 214 (358)
Q Consensus 203 A~lTD~LDG~LA 214 (358)
--+.|++|||+=
T Consensus 85 e~lAdLIdGYCr 96 (110)
T d2al6a2 85 ENMADLIDGYCR 96 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhheEE
Confidence 367899999973
No 3
>d2cx6a1 c.9.1.1 (A:1-90) Hypothetical protein YhcO {Escherichia coli [TaxId: 562]}
Probab=2.87 E-value=3.2e+02 Score=19.47 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.1
Q ss_pred HHHhhCCCCCchhhhhhhhHHHHH
Q 018312 212 YIARKMRLGSTFGAFLDPVADKLM 235 (358)
Q Consensus 212 ~LAR~~n~~S~fGa~LDPlADKIl 235 (358)
.+|+.++...-+|+=+|.+.|-+.
T Consensus 20 ~~~~~l~fp~~fG~NlDAl~D~lt 43 (90)
T d2cx6a1 20 DFSQTFGLAKDKVRDLDSLWDVLM 43 (90)
T ss_dssp HHHHHTTCCTTSCSSHHHHHHHHH
T ss_pred HHHHHcCCcchhCCCHHHHHHHHc
Confidence 468999999999999999999664
No 4
>d2gysa3 b.1.2.1 (A:218-316) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.60 E-value=1.2e+02 Score=22.73 Aligned_cols=18 Identities=33% Similarity=0.695 Sum_probs=14.5
Q ss_pred ccCCCCCCCCCCCCcccC
Q 018312 53 RIPPCALPVPSPSAHVSP 70 (358)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~ 70 (358)
-+--|-+|||.|+.|-.|
T Consensus 67 v~~~Cqi~V~dp~~hsqY 84 (99)
T d2gysa3 67 TRHHCQIPVPDPATHGQY 84 (99)
T ss_dssp EEEEEEEECSCTTTCCEE
T ss_pred EEEEeeeeCCCccccceE
Confidence 356699999999999654
No 5
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.32 E-value=2.9e+02 Score=21.28 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=18.9
Q ss_pred cccCCCCCCCCCCCCccccccCCc
Q 018312 111 EVTGSDPESPSDPGSGLVADMDHQ 134 (358)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~ 134 (358)
++.+.+-+-+-|.||++++||.+.
T Consensus 216 ~~~~Vsf~KGCY~GQE~vAR~~~r 239 (241)
T d1vlya2 216 ALGGISFKKGCYTGQEMVARAKFR 239 (241)
T ss_dssp GTTCCCSSSCCCTTHHHHHHTTST
T ss_pred hccCCCCCCCCcCcHHHHHHHHhc
Confidence 355777777779999999999764
No 6
>d1twua_ d.32.1.8 (A:) Hypothetical protein YycE {Bacillus subtilis [TaxId: 1423]}
Probab=2.05 E-value=2.3e+02 Score=20.09 Aligned_cols=10 Identities=40% Similarity=0.733 Sum_probs=7.8
Q ss_pred CcCCCCcccC
Q 018312 46 FTSPSGCRIP 55 (358)
Q Consensus 46 ~~~~~~~~~~ 55 (358)
+..|+||||.
T Consensus 118 f~DPDG~~Ie 127 (137)
T d1twua_ 118 IEDPDGWRIV 127 (137)
T ss_dssp EECTTCCEEE
T ss_pred EECCCCCEEE
Confidence 4589999975
No 7
>d1ay7b_ c.9.1.1 (B:) Barstar (barnase inhibitor) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=1.90 E-value=4.8e+02 Score=18.23 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.8
Q ss_pred HHHhhCCCCCchhhhhhhhHHHHH
Q 018312 212 YIARKMRLGSTFGAFLDPVADKLM 235 (358)
Q Consensus 212 ~LAR~~n~~S~fGa~LDPlADKIl 235 (358)
.++++++...-+|.=+|.+.|-+.
T Consensus 19 ~~~~~l~~p~~~G~N~DAl~D~lt 42 (89)
T d1ay7b_ 19 TLKKELALPEYYGENLDALWDCLT 42 (89)
T ss_dssp HHHHHTTCCTTCCSSHHHHHHHHH
T ss_pred HHHHHcCCCcccCCCHHHHHHHHc
Confidence 578899999999999999999543
No 8
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.84 E-value=8.6e+02 Score=14.60 Aligned_cols=15 Identities=40% Similarity=0.439 Sum_probs=9.2
Q ss_pred cccchHHHHHHHHHH
Q 018312 294 VNNLGKWKTATQMIA 308 (358)
Q Consensus 294 as~lGKvkTalq~va 308 (358)
.+.+|-+.|++..+.
T Consensus 3 vN~Lg~iAt~LFilv 17 (36)
T d2axtm1 3 VNQLGLIATALFVLV 17 (36)
T ss_dssp CCTTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 456777777665543
No 9
>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3), transactivation domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.78 E-value=4e+02 Score=22.16 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=10.6
Q ss_pred cCCCCcccCCCCCC
Q 018312 47 TSPSGCRIPPCALP 60 (358)
Q Consensus 47 ~~~~~~~~~~~~~~ 60 (358)
+++.||||.+|..+
T Consensus 33 ~~p~GcRl~~~~~~ 46 (239)
T d1qwta_ 33 SCPEGLRLVGSEVG 46 (239)
T ss_dssp CCTTCEEEESCSTT
T ss_pred cCCCeEEEecCCCC
Confidence 37899999877543
No 10
>d1tnra_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.77 E-value=2.7e+02 Score=20.83 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=14.6
Q ss_pred CCCcccCCCCCCCCCC------CCc--ccceeecCc
Q 018312 64 PSAHVSPQPRNSLSLS------LPF--SGFRYRSPK 91 (358)
Q Consensus 64 ~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~ 91 (358)
|.|||..++..++.+. ..| .|++++..+
T Consensus 2 paAHl~g~~~~~~~l~W~~~~g~a~~~~g~~~~~g~ 37 (144)
T d1tnra_ 2 PAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNS 37 (144)
T ss_dssp CEEEEEECTTCSSSCCEECSBTTCEEETTCEEETTE
T ss_pred CeEEEeCCCCCCCcceEecCCCCcceeCCeEEECCE
Confidence 6678766654443221 111 467776554
Done!