Query 018314
Match_columns 358
No_of_seqs 154 out of 1399
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:57:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01772 MDH_euk_gproteo mala 100.0 2.7E-66 5.8E-71 497.0 28.8 306 30-336 1-310 (312)
2 cd01337 MDH_glyoxysomal_mitoch 100.0 8E-66 1.7E-70 492.9 29.4 298 29-328 1-300 (310)
3 COG0039 Mdh Malate/lactate deh 100.0 9.7E-66 2.1E-70 487.8 27.8 288 29-330 1-303 (313)
4 PLN00106 malate dehydrogenase 100.0 3.6E-63 7.8E-68 477.1 30.8 300 27-330 17-320 (323)
5 cd05290 LDH_3 A subgroup of L- 100.0 1.8E-63 3.9E-68 477.3 28.2 284 30-329 1-304 (307)
6 PTZ00325 malate dehydrogenase; 100.0 3.2E-62 6.9E-67 470.1 30.8 299 27-329 7-308 (321)
7 TIGR01759 MalateDH-SF1 malate 100.0 1.2E-62 2.6E-67 474.1 27.4 296 26-334 1-323 (323)
8 cd05293 LDH_1 A subgroup of L- 100.0 6E-62 1.3E-66 467.9 28.6 285 27-328 2-307 (312)
9 KOG1495 Lactate dehydrogenase 100.0 9.2E-62 2E-66 441.5 25.1 290 25-332 17-327 (332)
10 PLN02602 lactate dehydrogenase 100.0 3.4E-61 7.3E-66 468.1 28.5 285 29-328 38-342 (350)
11 PRK00066 ldh L-lactate dehydro 100.0 1.3E-60 2.9E-65 459.6 30.3 290 25-330 3-309 (315)
12 KOG1494 NAD-dependent malate d 100.0 2.5E-60 5.5E-65 434.0 30.3 322 16-337 16-340 (345)
13 TIGR01771 L-LDH-NAD L-lactate 100.0 3.3E-61 7.2E-66 460.5 25.5 280 33-328 1-298 (299)
14 PRK05442 malate dehydrogenase; 100.0 6.5E-61 1.4E-65 462.6 27.6 295 27-334 3-322 (326)
15 PRK05086 malate dehydrogenase; 100.0 4.2E-60 9.1E-65 455.6 31.2 304 29-335 1-309 (312)
16 cd00704 MDH Malate dehydrogena 100.0 1.7E-60 3.8E-65 459.6 26.5 295 29-335 1-323 (323)
17 TIGR01757 Malate-DH_plant mala 100.0 5.9E-60 1.3E-64 462.5 29.0 313 23-349 39-378 (387)
18 PLN00112 malate dehydrogenase 100.0 5.8E-60 1.3E-64 468.8 28.3 297 25-334 97-420 (444)
19 cd01338 MDH_choloroplast_like 100.0 8.2E-60 1.8E-64 454.8 28.0 295 27-333 1-319 (322)
20 cd05291 HicDH_like L-2-hydroxy 100.0 1.1E-58 2.5E-63 445.3 28.6 285 29-329 1-302 (306)
21 cd00300 LDH_like L-lactate deh 100.0 8.4E-59 1.8E-63 444.8 27.4 285 31-330 1-298 (300)
22 PTZ00117 malate dehydrogenase; 100.0 6.1E-58 1.3E-62 442.2 30.5 290 27-330 4-310 (319)
23 PTZ00082 L-lactate dehydrogena 100.0 7.9E-58 1.7E-62 441.2 30.4 286 27-328 5-314 (321)
24 TIGR01763 MalateDH_bact malate 100.0 7E-58 1.5E-62 439.1 28.4 285 29-329 2-300 (305)
25 TIGR01758 MDH_euk_cyt malate d 100.0 4.1E-57 8.8E-62 436.4 27.1 293 30-334 1-322 (324)
26 cd05292 LDH_2 A subgroup of L- 100.0 8.3E-57 1.8E-61 432.5 28.5 285 29-329 1-303 (308)
27 cd01336 MDH_cytoplasmic_cytoso 100.0 4.5E-57 9.8E-62 436.6 25.6 296 27-334 1-324 (325)
28 cd01339 LDH-like_MDH L-lactate 100.0 8.9E-55 1.9E-59 417.2 28.0 283 31-329 1-297 (300)
29 cd05294 LDH-like_MDH_nadp A la 100.0 1.6E-54 3.6E-59 416.6 28.1 287 29-329 1-304 (309)
30 PRK06223 malate dehydrogenase; 100.0 1.7E-54 3.7E-59 416.3 28.0 286 28-329 2-301 (307)
31 cd05295 MDH_like Malate dehydr 100.0 2.2E-54 4.7E-59 428.8 28.7 294 26-334 121-450 (452)
32 PLN00135 malate dehydrogenase 100.0 2.3E-54 4.9E-59 413.7 25.5 267 56-334 15-304 (309)
33 TIGR01756 LDH_protist lactate 100.0 3E-53 6.5E-58 406.9 24.6 267 56-334 17-308 (313)
34 cd00650 LDH_MDH_like NAD-depen 100.0 4.2E-50 9.2E-55 378.0 29.4 252 31-329 1-260 (263)
35 KOG1496 Malate dehydrogenase [ 100.0 1.2E-42 2.6E-47 311.9 19.6 300 27-335 3-327 (332)
36 PF00056 Ldh_1_N: lactate/mala 100.0 6.1E-33 1.3E-37 237.8 12.9 137 29-172 1-141 (141)
37 cd05197 GH4_glycoside_hydrolas 100.0 1.4E-30 3.1E-35 259.7 24.3 280 29-334 1-393 (425)
38 PRK15076 alpha-galactosidase; 100.0 2.6E-30 5.7E-35 258.5 21.2 286 28-334 1-387 (431)
39 PF02866 Ldh_1_C: lactate/mala 100.0 3.8E-31 8.3E-36 234.5 11.7 151 174-330 1-166 (174)
40 cd05296 GH4_P_beta_glucosidase 100.0 1.2E-29 2.7E-34 252.5 23.5 288 29-334 1-382 (419)
41 cd05298 GH4_GlvA_pagL_like Gly 100.0 3E-28 6.5E-33 243.5 25.5 285 29-334 1-396 (437)
42 COG1486 CelF Alpha-galactosida 99.9 1.4E-26 3E-31 227.4 22.3 291 27-334 2-399 (442)
43 cd05297 GH4_alpha_glucosidase_ 99.9 8.1E-26 1.8E-30 226.3 26.0 286 29-334 1-390 (423)
44 PF02056 Glyco_hydro_4: Family 99.8 2.1E-20 4.5E-25 165.8 13.4 151 30-191 1-183 (183)
45 PF02737 3HCDH_N: 3-hydroxyacy 98.9 9.8E-09 2.1E-13 91.5 9.4 117 30-175 1-137 (180)
46 COG1250 FadB 3-hydroxyacyl-CoA 98.8 2.6E-08 5.6E-13 95.4 9.8 118 28-174 3-140 (307)
47 PRK07066 3-hydroxybutyryl-CoA 98.7 9E-08 1.9E-12 92.8 11.7 121 28-174 7-141 (321)
48 PRK07819 3-hydroxybutyryl-CoA 98.7 1.8E-07 3.9E-12 89.4 13.4 125 25-177 2-146 (286)
49 COG1004 Ugd Predicted UDP-gluc 98.7 6.6E-07 1.4E-11 87.6 16.0 116 29-156 1-132 (414)
50 TIGR02437 FadB fatty oxidation 98.6 3.6E-07 7.9E-12 97.5 11.7 121 25-174 310-450 (714)
51 KOG2304 3-hydroxyacyl-CoA dehy 98.6 8E-08 1.7E-12 87.0 5.2 122 27-175 10-155 (298)
52 PRK11154 fadJ multifunctional 98.5 5.9E-07 1.3E-11 96.0 12.1 120 26-174 307-447 (708)
53 PRK08293 3-hydroxybutyryl-CoA 98.5 6.6E-07 1.4E-11 85.4 11.3 121 28-174 3-142 (287)
54 TIGR02441 fa_ox_alpha_mit fatt 98.5 1.1E-06 2.3E-11 94.3 13.4 120 26-174 333-472 (737)
55 PRK11730 fadB multifunctional 98.5 9.8E-07 2.1E-11 94.4 12.6 119 27-174 312-450 (715)
56 TIGR02440 FadJ fatty oxidation 98.5 1.1E-06 2.4E-11 93.7 11.9 120 26-174 302-442 (699)
57 PF01210 NAD_Gly3P_dh_N: NAD-d 98.4 5.4E-07 1.2E-11 78.4 6.4 92 30-143 1-101 (157)
58 PRK05808 3-hydroxybutyryl-CoA 98.4 4.5E-06 9.7E-11 79.4 12.9 119 28-174 3-140 (282)
59 PF03721 UDPG_MGDP_dh_N: UDP-g 98.4 1.4E-06 3.1E-11 78.0 8.3 121 29-163 1-139 (185)
60 PRK06035 3-hydroxyacyl-CoA deh 98.4 4.4E-06 9.5E-11 79.9 11.9 120 29-176 4-145 (291)
61 TIGR01915 npdG NADPH-dependent 98.3 1.3E-05 2.7E-10 73.6 13.5 100 29-150 1-106 (219)
62 PRK08268 3-hydroxy-acyl-CoA de 98.3 5.8E-06 1.3E-10 85.1 12.4 124 25-177 4-147 (507)
63 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.3 5.5E-06 1.2E-10 85.1 12.1 123 27-177 4-145 (503)
64 PLN02353 probable UDP-glucose 98.3 1.4E-05 3E-10 81.5 13.8 122 28-156 1-139 (473)
65 PRK07530 3-hydroxybutyryl-CoA 98.3 1.6E-05 3.4E-10 76.1 13.2 122 28-177 4-144 (292)
66 PRK06130 3-hydroxybutyryl-CoA 98.2 1.2E-05 2.7E-10 77.4 11.6 121 28-174 4-137 (311)
67 PRK09260 3-hydroxybutyryl-CoA 98.2 8.4E-06 1.8E-10 77.8 10.2 121 29-175 2-140 (288)
68 PRK07531 bifunctional 3-hydrox 98.1 2E-05 4.2E-10 81.1 11.9 103 29-152 5-121 (495)
69 PLN02166 dTDP-glucose 4,6-dehy 98.1 4.1E-05 9E-10 77.4 13.9 116 21-144 113-232 (436)
70 PRK06129 3-hydroxyacyl-CoA deh 98.1 4.1E-05 8.8E-10 73.9 12.3 121 28-174 2-140 (308)
71 PF01073 3Beta_HSD: 3-beta hyd 98.1 2.5E-05 5.3E-10 74.5 10.2 117 33-151 2-120 (280)
72 PLN02545 3-hydroxybutyryl-CoA 98.1 7E-05 1.5E-09 71.7 13.4 123 28-178 4-145 (295)
73 COG0240 GpsA Glycerol-3-phosph 98.0 3.2E-05 7E-10 74.6 9.7 94 28-145 1-105 (329)
74 PF02719 Polysacc_synt_2: Poly 98.0 6.6E-06 1.4E-10 78.4 4.8 120 31-151 1-138 (293)
75 PTZ00345 glycerol-3-phosphate 98.0 5.2E-05 1.1E-09 74.9 11.0 105 20-144 3-128 (365)
76 PLN02427 UDP-apiose/xylose syn 98.0 7.8E-05 1.7E-09 73.8 12.4 120 21-146 7-136 (386)
77 PRK00094 gpsA NAD(P)H-dependen 97.9 9.2E-05 2E-09 71.4 10.6 101 28-150 1-110 (325)
78 PLN00198 anthocyanidin reducta 97.9 0.0003 6.5E-09 68.2 14.2 175 27-204 8-202 (338)
79 PRK15181 Vi polysaccharide bio 97.9 0.00024 5.3E-09 69.4 13.5 168 27-204 14-199 (348)
80 COG1086 Predicted nucleoside-d 97.9 0.00024 5.2E-09 72.7 13.6 124 27-151 249-386 (588)
81 COG2085 Predicted dinucleotide 97.9 0.00012 2.5E-09 66.4 10.1 97 28-149 1-97 (211)
82 PLN02206 UDP-glucuronate decar 97.8 0.00023 4.9E-09 72.2 13.3 118 21-146 112-233 (442)
83 TIGR03026 NDP-sugDHase nucleot 97.8 0.00024 5.1E-09 71.3 12.7 114 29-156 1-132 (411)
84 PRK12439 NAD(P)H-dependent gly 97.8 0.00015 3.4E-09 70.9 10.4 100 26-150 5-116 (341)
85 PF03807 F420_oxidored: NADP o 97.8 5.7E-05 1.2E-09 59.6 6.0 94 30-147 1-96 (96)
86 TIGR03376 glycerol3P_DH glycer 97.8 0.00017 3.7E-09 70.6 10.4 95 30-144 1-115 (342)
87 PRK08125 bifunctional UDP-gluc 97.8 0.00028 6.1E-09 75.1 12.8 179 16-204 303-497 (660)
88 TIGR01181 dTDP_gluc_dehyt dTDP 97.7 0.00035 7.6E-09 66.2 11.9 167 30-204 1-184 (317)
89 PF03446 NAD_binding_2: NAD bi 97.7 0.00017 3.6E-09 63.1 8.9 65 28-104 1-65 (163)
90 PRK14620 NAD(P)H-dependent gly 97.7 0.00019 4.2E-09 69.6 10.1 100 29-150 1-111 (326)
91 PLN02650 dihydroflavonol-4-red 97.7 0.00067 1.4E-08 66.2 13.8 116 28-145 5-127 (351)
92 PRK14619 NAD(P)H-dependent gly 97.7 0.00017 3.8E-09 69.5 9.5 81 27-148 3-85 (308)
93 KOG1502 Flavonol reductase/cin 97.7 0.00045 9.7E-09 66.8 11.9 120 27-151 5-133 (327)
94 PLN02662 cinnamyl-alcohol dehy 97.7 0.00075 1.6E-08 64.6 13.6 107 27-135 3-116 (322)
95 PRK06522 2-dehydropantoate 2-r 97.7 0.00054 1.2E-08 65.3 12.5 103 29-153 1-108 (304)
96 PRK15057 UDP-glucose 6-dehydro 97.7 0.00032 6.9E-09 70.0 11.1 113 29-155 1-128 (388)
97 PRK14618 NAD(P)H-dependent gly 97.7 0.00026 5.6E-09 68.8 10.1 97 28-149 4-108 (328)
98 PRK08229 2-dehydropantoate 2-r 97.7 0.00031 6.8E-09 68.4 10.4 99 28-152 2-114 (341)
99 PRK12921 2-dehydropantoate 2-r 97.6 0.00046 9.9E-09 66.0 11.3 119 29-176 1-127 (305)
100 TIGR03589 PseB UDP-N-acetylglu 97.6 0.00057 1.2E-08 66.2 11.2 113 28-145 4-124 (324)
101 TIGR02622 CDP_4_6_dhtase CDP-g 97.6 0.0013 2.9E-08 64.0 13.6 114 28-146 4-127 (349)
102 PRK11908 NAD-dependent epimera 97.5 0.00062 1.3E-08 66.3 10.8 110 28-146 1-118 (347)
103 CHL00194 ycf39 Ycf39; Provisio 97.5 0.00036 7.8E-09 67.2 8.8 105 29-145 1-109 (317)
104 PRK06249 2-dehydropantoate 2-r 97.5 0.00043 9.3E-09 66.9 9.2 123 24-176 1-131 (313)
105 PF13460 NAD_binding_10: NADH( 97.5 0.0012 2.6E-08 57.9 11.1 93 31-145 1-97 (183)
106 PLN02214 cinnamoyl-CoA reducta 97.5 0.0017 3.6E-08 63.4 13.1 105 27-138 9-120 (342)
107 PLN02778 3,5-epimerase/4-reduc 97.5 0.0021 4.5E-08 61.6 13.5 94 23-138 4-104 (298)
108 PLN02989 cinnamyl-alcohol dehy 97.5 0.0029 6.2E-08 60.8 14.4 117 27-145 4-128 (325)
109 PRK10217 dTDP-glucose 4,6-dehy 97.5 0.0019 4E-08 62.9 13.0 176 28-205 1-195 (355)
110 TIGR03466 HpnA hopanoid-associ 97.5 0.00094 2E-08 63.8 10.7 112 29-146 1-113 (328)
111 PLN02695 GDP-D-mannose-3',5'-e 97.5 0.00055 1.2E-08 67.7 9.1 169 26-205 19-202 (370)
112 PLN03209 translocon at the inn 97.4 0.0023 5E-08 66.5 13.3 115 28-145 80-207 (576)
113 TIGR02354 thiF_fam2 thiamine b 97.4 0.0015 3.2E-08 59.3 10.4 98 28-142 21-141 (200)
114 PRK11064 wecC UDP-N-acetyl-D-m 97.4 0.0018 4E-08 65.1 12.1 110 28-155 3-130 (415)
115 PRK15182 Vi polysaccharide bio 97.4 0.0031 6.8E-08 63.6 13.6 112 27-154 5-130 (425)
116 PRK10084 dTDP-glucose 4,6 dehy 97.4 0.002 4.3E-08 62.6 11.9 175 29-205 1-202 (352)
117 PRK06194 hypothetical protein; 97.4 0.0031 6.6E-08 59.4 12.8 159 28-202 6-192 (287)
118 PLN02986 cinnamyl-alcohol dehy 97.3 0.0052 1.1E-07 59.0 14.0 106 28-135 5-117 (322)
119 PLN02896 cinnamyl-alcohol dehy 97.3 0.0041 8.9E-08 60.7 13.1 173 27-204 9-210 (353)
120 PRK08269 3-hydroxybutyryl-CoA 97.3 0.0018 3.9E-08 62.8 10.3 112 40-175 1-138 (314)
121 PRK10675 UDP-galactose-4-epime 97.3 0.0026 5.7E-08 61.3 11.4 113 29-145 1-123 (338)
122 TIGR01777 yfcH conserved hypot 97.3 0.0016 3.6E-08 61.0 9.6 99 31-138 1-103 (292)
123 PLN02572 UDP-sulfoquinovose sy 97.2 0.0034 7.4E-08 63.7 12.2 177 26-205 45-263 (442)
124 TIGR00872 gnd_rel 6-phosphoglu 97.2 0.0023 4.9E-08 61.5 10.1 95 29-148 1-96 (298)
125 PLN02583 cinnamoyl-CoA reducta 97.2 0.009 1.9E-07 57.0 14.1 105 28-136 6-118 (297)
126 PRK07680 late competence prote 97.2 0.0028 6E-08 60.0 10.3 97 29-149 1-100 (273)
127 COG1748 LYS9 Saccharopine dehy 97.2 0.003 6.6E-08 62.7 10.9 75 28-105 1-77 (389)
128 PRK07502 cyclohexadienyl dehyd 97.2 0.0029 6.2E-08 60.9 10.5 68 28-104 6-74 (307)
129 PLN02657 3,8-divinyl protochlo 97.2 0.0049 1.1E-07 61.5 12.3 117 21-145 53-181 (390)
130 COG0451 WcaG Nucleoside-diphos 97.2 0.0025 5.4E-08 60.3 9.8 166 30-206 2-178 (314)
131 PRK11880 pyrroline-5-carboxyla 97.2 0.0023 5.1E-08 60.1 9.5 96 28-149 2-98 (267)
132 PLN02260 probable rhamnose bio 97.1 0.0066 1.4E-07 64.7 13.6 178 27-205 5-194 (668)
133 PLN02240 UDP-glucose 4-epimera 97.1 0.0077 1.7E-07 58.4 13.0 116 27-145 4-131 (352)
134 PF11975 Glyco_hydro_4C: Famil 97.1 0.0033 7.1E-08 58.2 9.8 77 249-334 134-216 (232)
135 PRK12549 shikimate 5-dehydroge 97.1 0.0021 4.5E-08 61.5 8.6 75 27-106 126-204 (284)
136 PRK07634 pyrroline-5-carboxyla 97.1 0.0046 1E-07 57.2 10.8 70 27-104 3-74 (245)
137 PTZ00142 6-phosphogluconate de 97.1 0.0035 7.6E-08 64.0 10.5 98 28-148 1-104 (470)
138 PRK07417 arogenate dehydrogena 97.1 0.0025 5.5E-08 60.5 9.0 64 29-104 1-65 (279)
139 PLN02688 pyrroline-5-carboxyla 97.1 0.0032 7E-08 59.1 9.4 66 29-104 1-69 (266)
140 TIGR01472 gmd GDP-mannose 4,6- 97.0 0.0071 1.5E-07 58.7 11.6 154 29-192 1-177 (343)
141 PRK07201 short chain dehydroge 97.0 0.012 2.6E-07 62.2 13.8 110 29-139 1-119 (657)
142 PLN02253 xanthoxin dehydrogena 97.0 0.019 4.1E-07 53.8 13.7 153 27-199 17-194 (280)
143 PRK06545 prephenate dehydrogen 97.0 0.0043 9.3E-08 61.2 9.6 68 29-104 1-68 (359)
144 PF01118 Semialdhyde_dh: Semia 97.0 0.0014 3.1E-08 54.2 5.3 72 30-104 1-74 (121)
145 PRK09987 dTDP-4-dehydrorhamnos 97.0 0.0038 8.3E-08 59.7 9.0 99 29-145 1-103 (299)
146 COG0300 DltE Short-chain dehyd 96.9 0.015 3.3E-07 54.9 12.6 120 26-149 4-146 (265)
147 PF01488 Shikimate_DH: Shikima 96.9 0.0032 6.9E-08 53.3 7.3 74 27-107 11-86 (135)
148 PRK08655 prephenate dehydrogen 96.9 0.0051 1.1E-07 62.4 10.0 64 29-104 1-66 (437)
149 PRK08643 acetoin reductase; Va 96.9 0.051 1.1E-06 50.0 15.8 116 29-148 3-141 (256)
150 PRK14982 acyl-ACP reductase; P 96.9 0.0053 1.2E-07 60.0 9.5 98 27-152 154-253 (340)
151 PRK11199 tyrA bifunctional cho 96.9 0.004 8.6E-08 61.8 8.8 60 21-104 91-150 (374)
152 PF10727 Rossmann-like: Rossma 96.9 0.0027 5.9E-08 53.4 6.5 103 25-154 7-115 (127)
153 PRK06928 pyrroline-5-carboxyla 96.9 0.0088 1.9E-07 56.8 10.7 100 28-150 1-103 (277)
154 cd01487 E1_ThiF_like E1_ThiF_l 96.9 0.0093 2E-07 52.8 10.1 33 30-64 1-33 (174)
155 TIGR02356 adenyl_thiF thiazole 96.9 0.0064 1.4E-07 55.1 9.1 36 27-64 20-55 (202)
156 TIGR01214 rmlD dTDP-4-dehydror 96.8 0.0061 1.3E-07 57.3 9.2 95 30-145 1-99 (287)
157 PRK11150 rfaD ADP-L-glycero-D- 96.8 0.0084 1.8E-07 57.1 10.2 102 31-137 2-109 (308)
158 PLN02653 GDP-mannose 4,6-dehyd 96.8 0.01 2.2E-07 57.6 10.9 109 27-137 5-126 (340)
159 PRK13394 3-hydroxybutyrate deh 96.8 0.0074 1.6E-07 55.7 9.5 114 28-145 7-143 (262)
160 PRK11559 garR tartronate semia 96.8 0.0057 1.2E-07 58.4 8.9 64 29-104 3-66 (296)
161 PRK07523 gluconate 5-dehydroge 96.8 0.026 5.6E-07 52.1 13.1 116 28-147 10-147 (255)
162 TIGR01505 tartro_sem_red 2-hyd 96.8 0.0039 8.5E-08 59.4 7.8 63 30-104 1-63 (291)
163 PRK07231 fabG 3-ketoacyl-(acyl 96.8 0.029 6.3E-07 51.3 13.3 114 27-146 4-141 (251)
164 COG2084 MmsB 3-hydroxyisobutyr 96.8 0.0089 1.9E-07 57.1 9.9 65 29-104 1-65 (286)
165 PRK08267 short chain dehydroge 96.8 0.011 2.4E-07 54.7 10.5 112 29-147 2-137 (260)
166 KOG1430 C-3 sterol dehydrogena 96.8 0.008 1.7E-07 59.1 9.7 119 27-149 3-128 (361)
167 PRK05708 2-dehydropantoate 2-r 96.8 0.028 6.1E-07 54.1 13.4 117 28-173 2-125 (305)
168 PRK07679 pyrroline-5-carboxyla 96.8 0.014 2.9E-07 55.5 11.0 69 28-104 3-73 (279)
169 PRK06924 short chain dehydroge 96.8 0.017 3.7E-07 53.0 11.4 34 29-64 2-35 (251)
170 PRK07069 short chain dehydroge 96.8 0.057 1.2E-06 49.4 14.8 116 30-148 1-140 (251)
171 PRK06407 ornithine cyclodeamin 96.7 0.0031 6.7E-08 60.8 6.2 95 3-104 94-190 (301)
172 PRK05876 short chain dehydroge 96.7 0.031 6.8E-07 52.6 13.0 115 28-146 6-143 (275)
173 PRK07102 short chain dehydroge 96.7 0.023 5E-07 52.0 11.8 117 28-147 1-136 (243)
174 PF00899 ThiF: ThiF family; I 96.7 0.0052 1.1E-07 51.8 6.8 75 28-104 2-100 (135)
175 PF01370 Epimerase: NAD depend 96.7 0.0063 1.4E-07 55.1 7.9 164 31-204 1-174 (236)
176 PF02423 OCD_Mu_crystall: Orni 96.7 0.0021 4.6E-08 62.2 5.0 92 5-103 106-199 (313)
177 PRK08340 glucose-1-dehydrogena 96.7 0.06 1.3E-06 49.9 14.6 114 29-147 1-139 (259)
178 PRK09599 6-phosphogluconate de 96.7 0.011 2.3E-07 56.9 9.7 64 29-104 1-67 (301)
179 PRK12491 pyrroline-5-carboxyla 96.7 0.014 3E-07 55.4 10.3 67 29-104 3-71 (272)
180 TIGR02197 heptose_epim ADP-L-g 96.7 0.011 2.4E-07 56.2 9.7 109 31-145 1-113 (314)
181 PRK08644 thiamine biosynthesis 96.7 0.014 3E-07 53.4 9.9 34 28-63 28-61 (212)
182 KOG1201 Hydroxysteroid 17-beta 96.7 0.025 5.5E-07 53.9 11.8 118 26-149 36-176 (300)
183 PRK05875 short chain dehydroge 96.7 0.045 9.7E-07 51.1 13.7 159 28-202 7-188 (276)
184 TIGR01832 kduD 2-deoxy-D-gluco 96.7 0.044 9.5E-07 50.2 13.4 116 27-146 4-140 (248)
185 PRK07326 short chain dehydroge 96.7 0.036 7.8E-07 50.3 12.6 115 28-147 6-141 (237)
186 PF02558 ApbA: Ketopantoate re 96.7 0.0057 1.2E-07 52.2 6.9 118 31-175 1-125 (151)
187 PRK12480 D-lactate dehydrogena 96.7 0.0075 1.6E-07 58.9 8.5 95 25-148 143-237 (330)
188 PRK06172 short chain dehydroge 96.7 0.038 8.2E-07 50.8 12.9 156 27-201 6-185 (253)
189 PRK08278 short chain dehydroge 96.7 0.065 1.4E-06 50.3 14.7 158 27-201 5-192 (273)
190 PRK07424 bifunctional sterol d 96.6 0.028 6E-07 56.5 12.7 104 27-135 177-291 (406)
191 PRK10538 malonic semialdehyde 96.6 0.03 6.4E-07 51.6 12.0 111 29-147 1-135 (248)
192 PRK06935 2-deoxy-D-gluconate 3 96.6 0.03 6.5E-07 51.8 12.1 124 17-147 6-151 (258)
193 PRK07067 sorbitol dehydrogenas 96.6 0.023 4.9E-07 52.5 11.2 151 28-199 6-179 (257)
194 TIGR02371 ala_DH_arch alanine 96.6 0.0045 9.7E-08 60.3 6.7 92 6-104 107-200 (325)
195 COG1087 GalE UDP-glucose 4-epi 96.6 0.051 1.1E-06 52.0 13.4 150 29-192 1-163 (329)
196 PRK12384 sorbitol-6-phosphate 96.6 0.048 1E-06 50.4 13.3 118 29-148 3-143 (259)
197 PRK12367 short chain dehydroge 96.6 0.025 5.4E-07 52.6 11.3 103 28-134 14-124 (245)
198 PRK07832 short chain dehydroge 96.6 0.13 2.9E-06 48.0 16.3 117 29-148 1-140 (272)
199 PRK07806 short chain dehydroge 96.6 0.016 3.4E-07 53.1 9.9 115 28-146 6-135 (248)
200 PRK05717 oxidoreductase; Valid 96.6 0.015 3.3E-07 53.7 9.8 152 28-201 10-184 (255)
201 PRK08507 prephenate dehydrogen 96.6 0.012 2.5E-07 55.8 9.0 66 29-104 1-66 (275)
202 TIGR01179 galE UDP-glucose-4-e 96.6 0.023 5E-07 53.9 11.1 105 30-139 1-115 (328)
203 KOG1205 Predicted dehydrogenas 96.6 0.033 7.2E-07 53.1 11.9 122 26-151 10-155 (282)
204 PRK06141 ornithine cyclodeamin 96.5 0.0055 1.2E-07 59.4 6.7 94 4-104 102-197 (314)
205 PLN00141 Tic62-NAD(P)-related 96.5 0.013 2.8E-07 54.3 9.0 109 22-138 11-125 (251)
206 COG0136 Asd Aspartate-semialde 96.5 0.011 2.4E-07 57.3 8.6 73 28-105 1-75 (334)
207 PRK12481 2-deoxy-D-gluconate 3 96.5 0.028 6.2E-07 52.0 11.2 156 28-201 8-184 (251)
208 cd01065 NAD_bind_Shikimate_DH 96.5 0.0096 2.1E-07 50.8 7.4 73 27-107 18-92 (155)
209 PLN02256 arogenate dehydrogena 96.5 0.017 3.6E-07 55.8 9.7 66 26-104 34-100 (304)
210 PRK07340 ornithine cyclodeamin 96.5 0.0065 1.4E-07 58.6 6.8 94 4-105 102-197 (304)
211 cd01483 E1_enzyme_family Super 96.5 0.023 4.9E-07 48.3 9.5 33 30-64 1-33 (143)
212 COG4221 Short-chain alcohol de 96.5 0.096 2.1E-06 48.7 14.0 155 29-201 7-181 (246)
213 COG2910 Putative NADH-flavin r 96.5 0.02 4.3E-07 51.0 9.1 104 29-145 1-104 (211)
214 PLN02686 cinnamoyl-CoA reducta 96.5 0.011 2.3E-07 58.4 8.4 108 26-135 51-169 (367)
215 PRK12828 short chain dehydroge 96.5 0.024 5.1E-07 51.3 10.0 35 28-64 7-41 (239)
216 PRK12429 3-hydroxybutyrate deh 96.5 0.02 4.3E-07 52.6 9.6 114 28-146 4-140 (258)
217 TIGR03206 benzo_BadH 2-hydroxy 96.4 0.042 9.2E-07 50.2 11.7 114 28-146 3-139 (250)
218 PRK15461 NADH-dependent gamma- 96.4 0.0071 1.5E-07 58.0 6.7 64 29-104 2-65 (296)
219 KOG1429 dTDP-glucose 4-6-dehyd 96.4 0.0066 1.4E-07 57.5 6.1 80 21-106 20-101 (350)
220 PRK08618 ornithine cyclodeamin 96.4 0.0067 1.5E-07 59.0 6.5 93 6-104 106-200 (325)
221 PRK05865 hypothetical protein; 96.4 0.011 2.4E-07 64.5 8.7 104 29-148 1-105 (854)
222 PRK12937 short chain dehydroge 96.4 0.053 1.1E-06 49.4 12.1 116 27-146 4-140 (245)
223 PRK08265 short chain dehydroge 96.4 0.04 8.7E-07 51.2 11.4 110 28-146 6-137 (261)
224 PRK12490 6-phosphogluconate de 96.4 0.025 5.3E-07 54.3 10.2 64 29-104 1-67 (299)
225 PRK05653 fabG 3-ketoacyl-(acyl 96.4 0.026 5.7E-07 51.1 10.0 36 27-64 4-39 (246)
226 PRK07576 short chain dehydroge 96.4 0.049 1.1E-06 50.8 12.0 118 27-148 8-146 (264)
227 PRK12829 short chain dehydroge 96.4 0.038 8.2E-07 51.0 11.1 36 27-64 10-45 (264)
228 PRK05854 short chain dehydroge 96.4 0.058 1.3E-06 51.9 12.7 171 27-201 13-205 (313)
229 PRK12320 hypothetical protein; 96.4 0.016 3.5E-07 61.9 9.5 98 29-145 1-101 (699)
230 PRK08291 ectoine utilization p 96.4 0.009 2E-07 58.3 7.1 93 6-104 111-205 (330)
231 COG0569 TrkA K+ transport syst 96.4 0.0056 1.2E-07 56.5 5.4 71 29-105 1-75 (225)
232 PTZ00431 pyrroline carboxylate 96.4 0.013 2.9E-07 55.0 8.0 90 28-149 3-94 (260)
233 PRK07063 short chain dehydroge 96.3 0.1 2.3E-06 48.2 13.9 117 28-147 7-146 (260)
234 PRK08993 2-deoxy-D-gluconate 3 96.3 0.05 1.1E-06 50.3 11.7 117 27-147 9-146 (253)
235 PRK12939 short chain dehydroge 96.3 0.072 1.6E-06 48.6 12.6 115 28-146 7-143 (250)
236 PRK07856 short chain dehydroge 96.3 0.048 1E-06 50.2 11.4 36 27-64 5-40 (252)
237 TIGR01745 asd_gamma aspartate- 96.3 0.016 3.4E-07 57.2 8.4 71 29-105 1-73 (366)
238 PRK06482 short chain dehydroge 96.3 0.059 1.3E-06 50.4 12.1 112 29-146 3-135 (276)
239 PRK06823 ornithine cyclodeamin 96.3 0.011 2.4E-07 57.4 7.3 94 4-104 105-200 (315)
240 PF01113 DapB_N: Dihydrodipico 96.3 0.013 2.8E-07 48.9 6.8 72 29-103 1-74 (124)
241 PF03949 Malic_M: Malic enzyme 96.3 0.018 3.9E-07 54.0 8.4 106 28-153 25-151 (255)
242 PRK07589 ornithine cyclodeamin 96.3 0.009 1.9E-07 58.7 6.6 93 5-104 107-201 (346)
243 COG1893 ApbA Ketopantoate redu 96.3 0.0092 2E-07 57.7 6.6 120 29-176 1-126 (307)
244 PRK08213 gluconate 5-dehydroge 96.3 0.07 1.5E-06 49.3 12.4 116 28-147 12-150 (259)
245 PRK06180 short chain dehydroge 96.3 0.076 1.6E-06 49.8 12.7 113 28-146 4-137 (277)
246 PRK07831 short chain dehydroge 96.3 0.31 6.8E-06 45.1 16.7 35 28-64 17-52 (262)
247 KOG2305 3-hydroxyacyl-CoA dehy 96.3 0.0063 1.4E-07 55.8 4.9 105 29-152 4-125 (313)
248 PRK06914 short chain dehydroge 96.3 0.094 2E-06 49.0 13.2 114 29-145 4-139 (280)
249 cd05213 NAD_bind_Glutamyl_tRNA 96.3 0.026 5.7E-07 54.6 9.6 101 27-152 177-280 (311)
250 cd05312 NAD_bind_1_malic_enz N 96.3 0.042 9.1E-07 52.2 10.7 122 27-174 24-166 (279)
251 PRK07097 gluconate 5-dehydroge 96.3 0.14 3.1E-06 47.5 14.3 156 27-201 9-187 (265)
252 PRK12475 thiamine/molybdopteri 96.3 0.026 5.6E-07 55.3 9.5 75 28-104 24-124 (338)
253 PRK01438 murD UDP-N-acetylmura 96.2 0.05 1.1E-06 55.6 12.0 127 27-163 15-148 (480)
254 PLN02712 arogenate dehydrogena 96.2 0.024 5.1E-07 60.5 9.9 66 26-104 50-116 (667)
255 PRK07024 short chain dehydroge 96.2 0.11 2.4E-06 48.1 13.4 113 28-146 2-138 (257)
256 PRK08251 short chain dehydroge 96.2 0.14 3E-06 46.8 13.9 77 29-107 3-92 (248)
257 COG0677 WecC UDP-N-acetyl-D-ma 96.2 0.063 1.4E-06 53.1 11.9 121 27-161 8-145 (436)
258 PRK06182 short chain dehydroge 96.2 0.038 8.3E-07 51.6 10.3 113 28-146 3-133 (273)
259 PRK05866 short chain dehydroge 96.2 0.062 1.3E-06 51.2 11.9 114 28-146 40-178 (293)
260 TIGR02355 moeB molybdopterin s 96.2 0.026 5.6E-07 52.7 8.9 36 27-64 23-58 (240)
261 PRK09291 short chain dehydroge 96.2 0.064 1.4E-06 49.3 11.6 113 29-146 3-132 (257)
262 TIGR01746 Thioester-redct thio 96.2 0.05 1.1E-06 52.4 11.3 109 30-139 1-130 (367)
263 TIGR02632 RhaD_aldol-ADH rhamn 96.2 0.084 1.8E-06 56.5 14.0 117 28-146 414-553 (676)
264 COG0345 ProC Pyrroline-5-carbo 96.2 0.021 4.7E-07 53.9 8.4 97 28-149 1-99 (266)
265 PLN02780 ketoreductase/ oxidor 96.2 0.055 1.2E-06 52.4 11.5 117 27-146 52-193 (320)
266 PRK07814 short chain dehydroge 96.2 0.069 1.5E-06 49.7 11.8 117 27-147 9-148 (263)
267 PLN02968 Probable N-acetyl-gam 96.2 0.011 2.3E-07 59.0 6.6 77 26-105 36-113 (381)
268 TIGR00873 gnd 6-phosphoglucona 96.2 0.017 3.8E-07 59.0 8.3 98 30-147 1-100 (467)
269 PRK07688 thiamine/molybdopteri 96.2 0.029 6.3E-07 55.0 9.5 35 28-64 24-58 (339)
270 PRK13243 glyoxylate reductase; 96.2 0.022 4.7E-07 55.7 8.6 94 25-145 147-240 (333)
271 PRK05867 short chain dehydroge 96.2 0.074 1.6E-06 49.0 11.9 115 27-145 8-145 (253)
272 TIGR01082 murC UDP-N-acetylmur 96.2 0.03 6.5E-07 56.8 9.9 128 30-170 1-131 (448)
273 cd00757 ThiF_MoeB_HesA_family 96.2 0.029 6.3E-07 51.7 8.9 35 28-64 21-55 (228)
274 PLN02712 arogenate dehydrogena 96.2 0.029 6.4E-07 59.8 10.1 71 21-104 362-433 (667)
275 PRK15469 ghrA bifunctional gly 96.2 0.043 9.3E-07 53.2 10.4 94 26-146 134-227 (312)
276 KOG2666 UDP-glucose/GDP-mannos 96.2 0.014 3.1E-07 55.9 6.8 77 28-109 1-91 (481)
277 PRK08589 short chain dehydroge 96.2 0.1 2.2E-06 48.9 12.8 115 28-148 6-143 (272)
278 PRK08642 fabG 3-ketoacyl-(acyl 96.2 0.087 1.9E-06 48.2 12.1 156 27-201 4-187 (253)
279 PRK05650 short chain dehydroge 96.1 0.062 1.3E-06 50.1 11.3 114 29-147 1-137 (270)
280 PRK09135 pteridine reductase; 96.1 0.056 1.2E-06 49.2 10.7 104 28-134 6-129 (249)
281 PRK07060 short chain dehydroge 96.1 0.028 6.2E-07 51.2 8.7 117 26-146 7-137 (245)
282 PRK08223 hypothetical protein; 96.1 0.019 4.2E-07 54.8 7.7 36 27-64 26-61 (287)
283 PRK08945 putative oxoacyl-(acy 96.1 0.11 2.4E-06 47.6 12.6 117 26-146 10-152 (247)
284 PRK06124 gluconate 5-dehydroge 96.1 0.035 7.6E-07 51.1 9.4 118 26-148 9-149 (256)
285 cd01078 NAD_bind_H4MPT_DH NADP 96.1 0.015 3.2E-07 52.0 6.6 76 27-105 27-106 (194)
286 PRK12936 3-ketoacyl-(acyl-carr 96.1 0.048 1E-06 49.6 10.2 114 28-148 6-141 (245)
287 COG1712 Predicted dinucleotide 96.1 0.047 1E-06 50.1 9.7 96 29-149 1-97 (255)
288 PRK15059 tartronate semialdehy 96.1 0.019 4.1E-07 55.1 7.6 63 29-104 1-63 (292)
289 cd00762 NAD_bind_malic_enz NAD 96.1 0.031 6.6E-07 52.4 8.7 124 26-174 23-167 (254)
290 TIGR02992 ectoine_eutC ectoine 96.1 0.015 3.2E-07 56.7 7.0 93 6-104 108-202 (326)
291 PRK05690 molybdopterin biosynt 96.1 0.035 7.6E-07 51.9 9.2 36 27-64 31-66 (245)
292 PRK06181 short chain dehydroge 96.1 0.07 1.5E-06 49.3 11.2 116 29-148 2-139 (263)
293 PRK08605 D-lactate dehydrogena 96.1 0.014 3E-07 57.0 6.7 66 25-104 143-208 (332)
294 PRK05479 ketol-acid reductoiso 96.1 0.035 7.5E-07 54.2 9.3 66 27-104 16-81 (330)
295 PRK06101 short chain dehydroge 96.1 0.12 2.7E-06 47.2 12.7 112 29-146 2-128 (240)
296 PRK05855 short chain dehydroge 96.1 0.079 1.7E-06 54.6 12.6 118 27-148 314-454 (582)
297 PRK08085 gluconate 5-dehydroge 96.1 0.05 1.1E-06 50.1 10.1 35 28-64 9-43 (254)
298 PRK06199 ornithine cyclodeamin 96.1 0.013 2.9E-07 58.3 6.5 95 5-104 133-231 (379)
299 PRK07109 short chain dehydroge 96.1 0.15 3.3E-06 49.6 13.9 115 27-146 7-144 (334)
300 PRK07666 fabG 3-ketoacyl-(acyl 96.1 0.097 2.1E-06 47.7 11.8 116 28-148 7-145 (239)
301 PRK06476 pyrroline-5-carboxyla 96.1 0.031 6.8E-07 52.3 8.7 68 29-104 1-69 (258)
302 PRK07478 short chain dehydroge 96.0 0.11 2.4E-06 47.8 12.3 157 27-201 5-185 (254)
303 PRK14106 murD UDP-N-acetylmura 96.0 0.04 8.6E-07 55.7 10.0 126 27-163 4-134 (450)
304 PRK05565 fabG 3-ketoacyl-(acyl 96.0 0.1 2.2E-06 47.4 11.9 35 28-64 5-40 (247)
305 PRK00421 murC UDP-N-acetylmura 96.0 0.055 1.2E-06 55.1 11.0 125 27-163 6-133 (461)
306 PRK06197 short chain dehydroge 96.0 0.085 1.9E-06 50.3 11.7 118 27-147 15-153 (306)
307 PRK12826 3-ketoacyl-(acyl-carr 96.0 0.072 1.6E-06 48.5 10.8 114 28-146 6-142 (251)
308 PRK08339 short chain dehydroge 96.0 0.26 5.6E-06 46.0 14.8 117 28-148 8-146 (263)
309 PRK06057 short chain dehydroge 96.0 0.037 8.1E-07 51.1 9.0 35 28-64 7-41 (255)
310 PRK00141 murD UDP-N-acetylmura 96.0 0.063 1.4E-06 55.0 11.3 125 28-163 15-147 (473)
311 PRK06728 aspartate-semialdehyd 96.0 0.011 2.5E-07 57.9 5.6 75 24-105 1-77 (347)
312 PRK08818 prephenate dehydrogen 96.0 0.036 7.8E-07 54.9 9.1 56 28-104 4-59 (370)
313 PRK06138 short chain dehydroge 96.0 0.12 2.6E-06 47.2 12.2 36 27-64 4-39 (252)
314 PRK12823 benD 1,6-dihydroxycyc 96.0 0.12 2.5E-06 47.8 12.1 114 28-146 8-144 (260)
315 TIGR03325 BphB_TodD cis-2,3-di 95.9 0.041 8.8E-07 51.1 8.9 36 27-64 4-39 (262)
316 PRK07453 protochlorophyllide o 95.9 0.079 1.7E-06 51.0 11.2 115 27-145 5-144 (322)
317 PRK07774 short chain dehydroge 95.9 0.14 3E-06 46.9 12.3 35 28-64 6-40 (250)
318 COG2423 Predicted ornithine cy 95.9 0.015 3.2E-07 56.7 6.0 95 4-104 107-203 (330)
319 PRK07574 formate dehydrogenase 95.9 0.05 1.1E-06 54.3 9.9 95 26-145 190-284 (385)
320 TIGR01963 PHB_DH 3-hydroxybuty 95.9 0.11 2.4E-06 47.5 11.6 75 29-107 2-89 (255)
321 PRK06398 aldose dehydrogenase; 95.9 0.077 1.7E-06 49.3 10.6 149 28-201 6-171 (258)
322 PRK06598 aspartate-semialdehyd 95.9 0.039 8.4E-07 54.6 8.8 72 28-105 1-74 (369)
323 PRK06198 short chain dehydroge 95.9 0.2 4.3E-06 46.2 13.2 117 27-147 5-145 (260)
324 cd01485 E1-1_like Ubiquitin ac 95.9 0.053 1.2E-06 49.0 9.1 35 28-64 19-53 (198)
325 PRK08416 7-alpha-hydroxysteroi 95.9 0.47 1E-05 43.9 15.8 35 27-63 7-41 (260)
326 PRK12742 oxidoreductase; Provi 95.9 0.1 2.2E-06 47.3 11.1 34 28-63 6-39 (237)
327 PRK13304 L-aspartate dehydroge 95.9 0.062 1.3E-06 50.8 9.8 68 28-104 1-69 (265)
328 PRK12827 short chain dehydroge 95.8 0.15 3.3E-06 46.3 12.2 117 28-148 6-149 (249)
329 PRK06841 short chain dehydroge 95.8 0.08 1.7E-06 48.6 10.4 36 27-64 14-49 (255)
330 PRK06701 short chain dehydroge 95.8 0.078 1.7E-06 50.4 10.5 118 26-147 44-183 (290)
331 PRK07677 short chain dehydroge 95.8 0.3 6.5E-06 44.9 14.1 114 29-146 2-138 (252)
332 PRK08936 glucose-1-dehydrogena 95.8 0.52 1.1E-05 43.6 15.7 116 27-146 6-145 (261)
333 PRK07454 short chain dehydroge 95.8 0.098 2.1E-06 47.7 10.7 116 27-147 5-143 (241)
334 PF05368 NmrA: NmrA-like famil 95.8 0.025 5.4E-07 51.7 6.6 93 31-137 1-95 (233)
335 PRK09134 short chain dehydroge 95.8 0.12 2.6E-06 47.8 11.3 36 27-64 8-43 (258)
336 PRK09186 flagellin modificatio 95.8 0.21 4.5E-06 45.8 12.8 35 28-64 4-38 (256)
337 PRK14806 bifunctional cyclohex 95.8 0.049 1.1E-06 58.7 9.9 67 29-104 4-71 (735)
338 PRK06139 short chain dehydroge 95.8 0.11 2.4E-06 50.6 11.4 115 27-146 6-143 (330)
339 TIGR00465 ilvC ketol-acid redu 95.8 0.059 1.3E-06 52.3 9.4 65 28-104 3-67 (314)
340 PRK05993 short chain dehydroge 95.8 0.063 1.4E-06 50.4 9.5 109 29-146 5-135 (277)
341 PRK07074 short chain dehydroge 95.7 0.1 2.2E-06 48.0 10.7 34 29-64 3-36 (257)
342 TIGR02853 spore_dpaA dipicolin 95.7 0.035 7.6E-07 53.1 7.7 96 27-150 150-246 (287)
343 PRK07890 short chain dehydroge 95.7 0.18 3.9E-06 46.3 12.3 35 28-64 5-39 (258)
344 PRK06196 oxidoreductase; Provi 95.7 0.069 1.5E-06 51.3 9.8 113 28-146 26-156 (315)
345 PRK07825 short chain dehydroge 95.7 0.062 1.3E-06 50.1 9.3 112 28-147 5-138 (273)
346 TIGR02415 23BDH acetoin reduct 95.7 0.11 2.3E-06 47.7 10.7 112 30-145 2-136 (254)
347 PRK05884 short chain dehydroge 95.7 0.053 1.1E-06 49.4 8.6 34 29-64 1-34 (223)
348 cd05311 NAD_bind_2_malic_enz N 95.7 0.07 1.5E-06 49.2 9.4 99 27-149 24-132 (226)
349 PRK06046 alanine dehydrogenase 95.7 0.023 5E-07 55.4 6.5 92 6-104 108-201 (326)
350 PRK12744 short chain dehydroge 95.7 0.35 7.6E-06 44.6 14.2 156 27-201 7-187 (257)
351 COG1090 Predicted nucleoside-d 95.7 0.13 2.8E-06 48.7 11.0 98 31-139 1-103 (297)
352 PRK09072 short chain dehydroge 95.7 0.24 5.2E-06 45.9 13.1 116 27-147 4-140 (263)
353 PLN02260 probable rhamnose bio 95.7 0.11 2.4E-06 55.4 12.1 90 26-137 378-474 (668)
354 PRK06113 7-alpha-hydroxysteroi 95.7 0.18 3.9E-06 46.5 12.1 117 27-147 10-147 (255)
355 PRK12825 fabG 3-ketoacyl-(acyl 95.7 0.082 1.8E-06 47.9 9.7 35 28-64 6-40 (249)
356 PRK06128 oxidoreductase; Provi 95.7 0.21 4.7E-06 47.5 12.9 115 28-146 55-192 (300)
357 PLN02350 phosphogluconate dehy 95.7 0.062 1.3E-06 55.3 9.6 98 27-148 5-110 (493)
358 PRK08263 short chain dehydroge 95.7 0.04 8.6E-07 51.6 7.7 111 29-145 4-135 (275)
359 PLN02928 oxidoreductase family 95.7 0.04 8.6E-07 54.2 7.9 106 26-147 157-264 (347)
360 PRK12746 short chain dehydroge 95.7 0.18 3.8E-06 46.3 11.9 115 28-146 6-147 (254)
361 PRK12935 acetoacetyl-CoA reduc 95.6 0.15 3.2E-06 46.6 11.3 115 28-146 6-143 (247)
362 COG0771 MurD UDP-N-acetylmuram 95.6 0.063 1.4E-06 54.4 9.4 128 28-163 7-136 (448)
363 PRK08219 short chain dehydroge 95.6 0.07 1.5E-06 47.9 9.0 73 28-107 3-82 (227)
364 PRK05599 hypothetical protein; 95.6 0.57 1.2E-05 43.1 15.3 155 29-201 1-178 (246)
365 PRK07904 short chain dehydroge 95.6 0.16 3.4E-06 47.2 11.6 116 27-146 7-146 (253)
366 TIGR01830 3oxo_ACP_reduc 3-oxo 95.6 0.16 3.5E-06 45.8 11.4 114 31-148 1-137 (239)
367 PRK08703 short chain dehydroge 95.6 0.8 1.7E-05 41.6 16.1 35 28-64 6-40 (239)
368 PRK12747 short chain dehydroge 95.6 0.57 1.2E-05 42.9 15.2 33 28-62 4-36 (252)
369 PRK12743 oxidoreductase; Provi 95.6 0.6 1.3E-05 43.0 15.4 115 29-147 3-141 (256)
370 KOG2711 Glycerol-3-phosphate d 95.6 0.088 1.9E-06 51.1 9.7 107 18-144 11-138 (372)
371 cd01492 Aos1_SUMO Ubiquitin ac 95.6 0.097 2.1E-06 47.3 9.6 35 28-64 21-55 (197)
372 PRK08306 dipicolinate synthase 95.6 0.056 1.2E-06 52.0 8.5 67 27-104 151-218 (296)
373 PRK08324 short chain dehydroge 95.6 0.14 3E-06 54.8 12.4 115 27-146 421-558 (681)
374 PRK09242 tropinone reductase; 95.6 0.29 6.3E-06 45.0 13.2 117 28-147 9-148 (257)
375 PRK04308 murD UDP-N-acetylmura 95.6 0.079 1.7E-06 53.6 10.0 127 28-163 5-136 (445)
376 PRK06179 short chain dehydroge 95.6 0.053 1.2E-06 50.4 8.2 112 28-147 4-133 (270)
377 PRK00048 dihydrodipicolinate r 95.6 0.43 9.3E-06 44.9 14.3 68 28-104 1-68 (257)
378 PLN02996 fatty acyl-CoA reduct 95.6 0.22 4.8E-06 51.3 13.4 108 27-135 10-150 (491)
379 PRK07062 short chain dehydroge 95.6 0.34 7.3E-06 44.9 13.5 117 28-147 8-147 (265)
380 PRK02705 murD UDP-N-acetylmura 95.6 0.09 1.9E-06 53.3 10.4 125 30-163 2-135 (459)
381 PLN00016 RNA-binding protein; 95.6 0.09 2E-06 51.9 10.1 36 27-64 51-90 (378)
382 COG0287 TyrA Prephenate dehydr 95.5 0.12 2.7E-06 49.2 10.6 67 28-104 3-72 (279)
383 PF03435 Saccharop_dh: Sacchar 95.5 0.0082 1.8E-07 59.5 2.7 73 31-106 1-77 (386)
384 PRK06949 short chain dehydroge 95.5 0.14 3.1E-06 47.0 10.8 35 28-64 9-43 (258)
385 PRK08217 fabG 3-ketoacyl-(acyl 95.5 0.11 2.3E-06 47.5 9.9 36 27-64 4-39 (253)
386 PLN03139 formate dehydrogenase 95.5 0.076 1.7E-06 53.0 9.3 96 25-145 196-291 (386)
387 PRK08226 short chain dehydroge 95.5 0.19 4.2E-06 46.4 11.6 35 28-64 6-40 (263)
388 PRK05557 fabG 3-ketoacyl-(acyl 95.5 0.26 5.6E-06 44.6 12.2 117 27-147 4-143 (248)
389 PRK08277 D-mannonate oxidoredu 95.5 0.58 1.3E-05 43.6 14.8 35 28-64 10-44 (278)
390 PRK08762 molybdopterin biosynt 95.4 0.074 1.6E-06 52.8 9.1 35 27-63 134-168 (376)
391 TIGR02685 pter_reduc_Leis pter 95.4 0.66 1.4E-05 43.1 15.1 32 30-63 3-34 (267)
392 PRK02006 murD UDP-N-acetylmura 95.4 0.31 6.8E-06 50.1 13.9 130 28-163 7-147 (498)
393 PRK09009 C factor cell-cell si 95.4 0.61 1.3E-05 42.2 14.5 71 29-107 1-78 (235)
394 PRK08264 short chain dehydroge 95.4 0.13 2.8E-06 46.7 10.0 115 26-148 4-135 (238)
395 PRK06484 short chain dehydroge 95.4 0.11 2.4E-06 53.3 10.6 118 27-147 4-142 (520)
396 PRK08862 short chain dehydroge 95.4 0.46 1E-05 43.4 13.7 116 27-146 4-144 (227)
397 PRK08628 short chain dehydroge 95.4 0.31 6.8E-06 44.8 12.7 101 28-132 7-124 (258)
398 KOG0409 Predicted dehydrogenas 95.4 0.048 1E-06 52.1 7.1 67 28-106 35-101 (327)
399 PF04321 RmlD_sub_bind: RmlD s 95.4 0.012 2.5E-07 56.2 3.0 97 29-144 1-99 (286)
400 PRK06500 short chain dehydroge 95.4 0.38 8.2E-06 43.8 13.0 112 28-146 6-137 (249)
401 TIGR01724 hmd_rel H2-forming N 95.4 0.12 2.6E-06 50.0 9.8 66 29-104 1-89 (341)
402 PRK02472 murD UDP-N-acetylmura 95.4 0.14 3.1E-06 51.7 11.0 126 27-163 4-134 (447)
403 PRK06463 fabG 3-ketoacyl-(acyl 95.4 0.25 5.5E-06 45.5 11.8 112 27-146 6-138 (255)
404 PRK01710 murD UDP-N-acetylmura 95.3 0.11 2.3E-06 52.9 10.1 125 28-163 14-143 (458)
405 PRK06523 short chain dehydroge 95.3 0.036 7.8E-07 51.2 6.1 110 27-148 8-140 (260)
406 PRK06171 sorbitol-6-phosphate 95.3 0.063 1.4E-06 49.8 7.7 35 28-64 9-43 (266)
407 PRK05872 short chain dehydroge 95.3 0.37 8E-06 45.8 13.1 113 27-146 8-143 (296)
408 PRK12745 3-ketoacyl-(acyl-carr 95.3 0.21 4.6E-06 45.7 11.1 34 29-64 3-36 (256)
409 PRK07985 oxidoreductase; Provi 95.3 0.5 1.1E-05 44.9 14.0 115 29-147 50-187 (294)
410 PRK05600 thiamine biosynthesis 95.3 0.092 2E-06 52.1 9.1 36 27-64 40-75 (370)
411 TIGR03736 PRTRC_ThiF PRTRC sys 95.3 0.18 3.9E-06 47.1 10.4 38 26-64 9-55 (244)
412 PF02826 2-Hacid_dh_C: D-isome 95.3 0.061 1.3E-06 47.6 7.0 101 20-147 28-129 (178)
413 PRK14194 bifunctional 5,10-met 95.2 0.045 9.8E-07 52.6 6.5 59 25-108 156-214 (301)
414 TIGR01327 PGDH D-3-phosphoglyc 95.2 0.085 1.8E-06 54.8 9.1 68 24-104 134-201 (525)
415 PRK14874 aspartate-semialdehyd 95.2 0.043 9.3E-07 53.7 6.4 71 28-105 1-72 (334)
416 COG1064 AdhP Zn-dependent alco 95.2 0.33 7.2E-06 47.5 12.4 116 26-174 165-285 (339)
417 PRK06114 short chain dehydroge 95.2 0.24 5.2E-06 45.7 11.1 115 28-147 8-146 (254)
418 PRK03659 glutathione-regulated 95.2 0.11 2.3E-06 54.9 9.7 137 28-196 400-541 (601)
419 TIGR01087 murD UDP-N-acetylmur 95.2 0.081 1.8E-06 53.2 8.5 123 30-163 1-128 (433)
420 PLN02725 GDP-4-keto-6-deoxyman 95.2 0.063 1.4E-06 50.7 7.3 88 33-138 2-94 (306)
421 PRK07878 molybdopterin biosynt 95.1 0.099 2.2E-06 52.3 8.9 36 27-64 41-76 (392)
422 PRK05597 molybdopterin biosynt 95.1 0.11 2.4E-06 51.3 9.1 35 28-64 28-62 (355)
423 cd01079 NAD_bind_m-THF_DH NAD 95.1 0.056 1.2E-06 48.7 6.3 78 25-108 59-138 (197)
424 PRK07035 short chain dehydroge 95.1 0.31 6.7E-06 44.7 11.4 35 28-64 8-42 (252)
425 PRK06953 short chain dehydroge 95.0 0.1 2.2E-06 47.2 8.0 35 28-64 1-35 (222)
426 PRK04690 murD UDP-N-acetylmura 95.0 0.14 3.1E-06 52.3 9.9 126 28-163 8-141 (468)
427 PRK06484 short chain dehydroge 95.0 0.14 3E-06 52.6 9.9 157 27-201 268-442 (520)
428 PRK06940 short chain dehydroge 95.0 0.23 4.9E-06 46.7 10.7 111 31-148 5-128 (275)
429 TIGR01035 hemA glutamyl-tRNA r 95.0 0.08 1.7E-06 53.4 7.9 104 27-152 179-284 (417)
430 PRK06718 precorrin-2 dehydroge 95.0 0.3 6.5E-06 44.3 10.9 72 26-105 8-79 (202)
431 TIGR01809 Shik-DH-AROM shikima 95.0 0.071 1.5E-06 50.9 7.1 74 27-105 124-199 (282)
432 PRK15116 sulfur acceptor prote 95.0 0.23 5.1E-06 47.0 10.5 35 28-64 30-64 (268)
433 cd01491 Ube1_repeat1 Ubiquitin 95.0 0.17 3.7E-06 48.5 9.6 74 28-104 19-113 (286)
434 cd01080 NAD_bind_m-THF_DH_Cycl 95.0 0.06 1.3E-06 47.5 6.1 56 27-108 43-99 (168)
435 PRK08220 2,3-dihydroxybenzoate 95.0 0.24 5.1E-06 45.3 10.4 36 27-64 7-42 (252)
436 PRK05693 short chain dehydroge 94.9 0.088 1.9E-06 49.2 7.5 34 29-64 2-35 (274)
437 PRK09424 pntA NAD(P) transhydr 94.9 0.17 3.7E-06 52.3 10.1 107 26-147 163-287 (509)
438 PRK12824 acetoacetyl-CoA reduc 94.9 0.43 9.3E-06 43.3 11.9 34 29-64 3-36 (245)
439 PRK08063 enoyl-(acyl carrier p 94.9 0.55 1.2E-05 42.8 12.6 34 28-63 4-38 (250)
440 PRK06125 short chain dehydroge 94.9 1 2.2E-05 41.5 14.6 116 27-146 6-140 (259)
441 TIGR01850 argC N-acetyl-gamma- 94.9 0.053 1.1E-06 53.3 6.1 74 29-105 1-77 (346)
442 PLN02383 aspartate semialdehyd 94.9 0.047 1E-06 53.7 5.6 73 26-105 5-78 (344)
443 PRK08177 short chain dehydroge 94.9 0.15 3.3E-06 46.1 8.7 34 29-64 2-35 (225)
444 PRK06200 2,3-dihydroxy-2,3-dih 94.9 0.12 2.5E-06 48.0 8.0 36 27-64 5-40 (263)
445 PF03059 NAS: Nicotianamine sy 94.9 0.094 2E-06 49.9 7.4 103 27-142 120-227 (276)
446 PRK07201 short chain dehydroge 94.9 0.27 6E-06 51.9 11.8 115 27-146 370-509 (657)
447 PRK05671 aspartate-semialdehyd 94.9 0.05 1.1E-06 53.3 5.8 72 27-105 3-75 (336)
448 PRK06077 fabG 3-ketoacyl-(acyl 94.8 0.38 8.3E-06 43.9 11.4 33 28-62 6-38 (252)
449 PRK07578 short chain dehydroge 94.8 0.33 7.2E-06 43.0 10.6 66 29-107 1-66 (199)
450 PRK13581 D-3-phosphoglycerate 94.8 0.12 2.7E-06 53.6 8.9 66 25-104 137-202 (526)
451 PRK00045 hemA glutamyl-tRNA re 94.8 0.1 2.3E-06 52.6 8.1 104 27-152 181-287 (423)
452 PRK09496 trkA potassium transp 94.8 0.12 2.5E-06 52.2 8.5 69 29-104 1-73 (453)
453 PRK13302 putative L-aspartate 94.8 0.082 1.8E-06 50.1 6.9 70 27-105 5-76 (271)
454 PRK07792 fabG 3-ketoacyl-(acyl 94.8 0.38 8.2E-06 46.0 11.6 78 27-108 11-101 (306)
455 PRK07877 hypothetical protein; 94.8 0.11 2.5E-06 55.7 8.6 75 28-104 107-204 (722)
456 PRK05786 fabG 3-ketoacyl-(acyl 94.7 0.34 7.4E-06 43.8 10.7 35 28-64 5-39 (238)
457 PRK03562 glutathione-regulated 94.7 0.33 7E-06 51.6 11.9 138 28-196 400-541 (621)
458 COG0111 SerA Phosphoglycerate 94.7 0.09 2E-06 51.2 7.1 67 25-104 139-205 (324)
459 PRK14851 hypothetical protein; 94.7 0.067 1.4E-06 57.2 6.7 76 27-104 42-141 (679)
460 PRK07411 hypothetical protein; 94.7 0.083 1.8E-06 52.8 7.0 36 27-64 37-72 (390)
461 TIGR01470 cysG_Nterm siroheme 94.6 0.41 9E-06 43.5 10.8 71 27-105 8-78 (205)
462 PLN00203 glutamyl-tRNA reducta 94.6 0.12 2.5E-06 53.7 7.9 72 28-106 266-339 (519)
463 PRK15438 erythronate-4-phospha 94.6 0.11 2.3E-06 51.8 7.3 62 26-104 114-175 (378)
464 PRK00257 erythronate-4-phospha 94.6 0.091 2E-06 52.4 6.8 62 26-104 114-175 (381)
465 PRK06901 aspartate-semialdehyd 94.5 0.024 5.3E-07 54.8 2.7 69 28-105 3-73 (322)
466 COG1088 RfbB dTDP-D-glucose 4, 94.5 0.3 6.4E-06 46.8 9.8 154 29-193 1-174 (340)
467 PRK06947 glucose-1-dehydrogena 94.5 0.33 7.1E-06 44.3 10.1 116 29-148 3-145 (248)
468 TIGR01081 mpl UDP-N-acetylmura 94.5 0.25 5.3E-06 50.1 10.0 129 30-168 1-132 (448)
469 PRK06719 precorrin-2 dehydroge 94.5 0.51 1.1E-05 41.0 10.6 68 26-104 11-78 (157)
470 COG1052 LdhA Lactate dehydroge 94.5 0.19 4.1E-06 49.0 8.7 98 21-145 139-236 (324)
471 PF02882 THF_DHG_CYH_C: Tetrah 94.4 0.15 3.3E-06 44.6 7.1 58 26-108 34-91 (160)
472 PRK13940 glutamyl-tRNA reducta 94.4 0.098 2.1E-06 52.7 6.7 74 28-108 181-254 (414)
473 TIGR00036 dapB dihydrodipicoli 94.4 0.21 4.6E-06 47.2 8.6 74 28-104 1-76 (266)
474 PRK03369 murD UDP-N-acetylmura 94.4 0.28 6.1E-06 50.4 10.2 126 27-163 11-143 (488)
475 PTZ00075 Adenosylhomocysteinas 94.4 0.2 4.3E-06 51.2 8.8 93 25-148 251-344 (476)
476 smart00859 Semialdhyde_dh Semi 94.4 0.32 6.9E-06 39.9 8.7 35 30-64 1-35 (122)
477 cd00401 AdoHcyase S-adenosyl-L 94.4 0.25 5.5E-06 49.7 9.5 90 27-147 201-291 (413)
478 TIGR01692 HIBADH 3-hydroxyisob 94.3 0.15 3.2E-06 48.7 7.5 60 33-104 1-60 (288)
479 PRK07577 short chain dehydroge 94.3 0.18 3.9E-06 45.6 7.8 35 28-64 3-37 (234)
480 TIGR03649 ergot_EASG ergot alk 94.3 0.17 3.7E-06 47.6 7.8 33 30-64 1-33 (285)
481 PRK06079 enoyl-(acyl carrier p 94.3 0.36 7.7E-06 44.7 9.8 36 27-64 6-43 (252)
482 PRK08040 putative semialdehyde 94.2 0.083 1.8E-06 51.7 5.6 72 27-105 3-75 (336)
483 TIGR00518 alaDH alanine dehydr 94.1 0.1 2.2E-06 51.8 6.1 75 27-107 166-241 (370)
484 PRK14852 hypothetical protein; 94.1 0.11 2.4E-06 57.2 6.8 76 27-104 331-430 (989)
485 PRK06436 glycerate dehydrogena 94.1 0.19 4.2E-06 48.5 7.9 95 25-149 119-215 (303)
486 PLN02494 adenosylhomocysteinas 94.1 0.21 4.6E-06 50.9 8.4 94 27-151 253-347 (477)
487 PLN02306 hydroxypyruvate reduc 94.0 0.33 7.1E-06 48.5 9.6 104 25-146 162-273 (386)
488 PRK13529 malate dehydrogenase; 94.0 0.57 1.2E-05 48.7 11.4 126 27-174 294-443 (563)
489 PRK12938 acetyacetyl-CoA reduc 94.0 0.61 1.3E-05 42.5 10.8 114 29-147 4-141 (246)
490 PRK15409 bifunctional glyoxyla 94.0 0.22 4.7E-06 48.5 8.1 97 25-147 142-238 (323)
491 PRK05476 S-adenosyl-L-homocyst 94.0 0.37 8E-06 48.7 9.8 92 27-149 211-303 (425)
492 PRK14175 bifunctional 5,10-met 94.0 0.14 3E-06 49.0 6.5 58 26-108 156-213 (286)
493 PRK06123 short chain dehydroge 94.0 0.81 1.7E-05 41.7 11.5 115 30-148 4-145 (248)
494 PRK00436 argC N-acetyl-gamma-g 94.0 0.12 2.5E-06 50.8 6.1 34 28-61 2-35 (343)
495 PRK07775 short chain dehydroge 93.9 1.1 2.3E-05 42.0 12.5 35 28-64 10-44 (274)
496 PRK07984 enoyl-(acyl carrier p 93.9 2.4 5.2E-05 39.6 14.8 35 28-64 6-42 (262)
497 TIGR03693 ocin_ThiF_like putat 93.9 0.3 6.6E-06 51.1 9.2 77 27-105 128-213 (637)
498 cd05212 NAD_bind_m-THF_DH_Cycl 93.9 0.19 4.1E-06 43.0 6.5 58 25-107 25-82 (140)
499 PRK01368 murD UDP-N-acetylmura 93.9 0.33 7.1E-06 49.5 9.5 123 27-163 5-130 (454)
500 COG1091 RfbD dTDP-4-dehydrorha 93.9 0.2 4.3E-06 47.8 7.3 145 29-206 1-156 (281)
No 1
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=2.7e-66 Score=496.96 Aligned_cols=306 Identities=59% Similarity=0.911 Sum_probs=270.8
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCCC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRK 109 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~ 109 (358)
||+||||+|+||+++++.|+.+++++||+|+|++++.|+++||+|...+.++..+++.+|++++++|||+||+++|.|++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 79999988999999999999999999999999988889999999987544566433223567899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHH-HHHHhCCCCCCceEeeccccHHHHHHHHHHH
Q 018314 110 PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE-VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGK 188 (358)
Q Consensus 110 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~-~~~~sg~~~~~kviG~t~lds~R~~~~la~~ 188 (358)
+|++|+|++..|++|++++++.|.+++|++++|++|||+|++++++.+ +++.+| +|++||||+|.|||+||++++|++
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg-~p~~rViG~g~LDsaR~r~~la~~ 159 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGV-YDPNKLFGVTTLDIVRANTFVAEL 159 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcC-CChHHEEeeecchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999995553333 466777 999999999889999999999999
Q ss_pred cCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHHHHHHc
Q 018314 189 ANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLK 268 (358)
Q Consensus 189 l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~ail~ 268 (358)
+|+++++|+++||||||++++||+||++++...+++++++++.++++++|++|++.|.|||+|+||+|.++++++++|++
T Consensus 160 l~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~ 239 (312)
T TIGR01772 160 KGKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVR 239 (312)
T ss_pred hCCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999998768999999998644466667899999999999999997668899999999999999999997
Q ss_pred cCCCCCcEEEeeeecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH--HHhhhhHH
Q 018314 269 GLNGVPDVVECSFVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH--IRKLFQIL 336 (358)
Q Consensus 269 ~~~~~~~v~~~s~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~--~~~~~~~~ 336 (358)
+..+++.++|+++++|+| .+|+|+|+||++|++||++++++++|+++|+++|++|++.|+ .++++.++
T Consensus 240 ~~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~ 310 (312)
T TIGR01772 240 GLKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFV 310 (312)
T ss_pred hhCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 544445688988889888 789999999999999999999886799999999999999998 44444443
No 2
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8e-66 Score=492.91 Aligned_cols=298 Identities=66% Similarity=1.013 Sum_probs=267.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~ 108 (358)
|||+||||+|+||+++++.|+.+++.+||+|+|++.++|+++||+|+..+.+++...+++|++++++|||+||++||.|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 69999998899999999999999999999999998678999999999754566653233566799999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHH-HHHHhCCCCCCceEeeccccHHHHHHHHHH
Q 018314 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE-VFKKAGTYNEKKLFGVTTLDVVRAKTFYAG 187 (358)
Q Consensus 109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~-~~~~sg~~~~~kviG~t~lds~R~~~~la~ 187 (358)
++|++|+|++..|+++++++++.|.+++|++|+|++|||+|+|++++.+ +++.+| +|++||||+|.|||+|+++++|+
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~-~p~~rviG~~~LDs~R~~~~la~ 159 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGV-YDPKRLFGVTTLDVVRANTFVAE 159 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcC-CCHHHEEeeechHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999665443 367777 99999999988999999999999
Q ss_pred HcCCCCCCCceEEEeec-CCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHHHHH
Q 018314 188 KANVNVAEVNVPVVGGH-AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 266 (358)
Q Consensus 188 ~l~v~~~~v~~~v~G~h-g~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~ai 266 (358)
++|+++++|+++||||| |+ ++||+||++.+...+++++++++.++++++|++|++.|.|||+|+||+|.++++++++|
T Consensus 160 ~l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aI 238 (310)
T cd01337 160 LLGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSL 238 (310)
T ss_pred HhCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHH
Confidence 99999999999999999 77 89999999987555666678999999999999999986678999999999999999999
Q ss_pred HccCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 018314 267 LKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH 328 (358)
Q Consensus 267 l~~~~~~~~v~~~s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~ 328 (358)
++++++++.++++++++++-.+|+|+|+||++|++||++++++++|+++|+++|++|++.|+
T Consensus 239 l~~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~ 300 (310)
T cd01337 239 LRGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELK 300 (310)
T ss_pred HHhcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 98866655677888766543578999999999999999999883499999999999999998
No 3
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=9.7e-66 Score=487.78 Aligned_cols=288 Identities=43% Similarity=0.614 Sum_probs=262.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCC--ccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+||+|||| |+||+++++.|+.+++.+|++|||+++ ++|.++||.|+.+. ..++... +.| +++++|||+||++|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcCCCEEEEeC
Confidence 59999998 999999999998788878999999996 79999999999742 3344432 234 68999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHH
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT 183 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~ 183 (358)
|.||||||+|+|++..|++|+++++++|.+++||++++++|||+|+|||++ |+.+| +|++||||+ |.||++||++
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~---~k~sg-~p~~rvig~gt~LDsaR~~~ 153 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA---MKFSG-FPKNRVIGSGTVLDSARFRT 153 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH---HHhcC-CCccceecccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987 89999 999999999 8999999999
Q ss_pred HHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C-------CCHHHHHHHHHHHhcCcceEEeeccCCCCccchH
Q 018314 184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-------LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255 (358)
Q Consensus 184 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~-------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~ 255 (358)
++|+++++++++|+++|+|+||+ ++||+||++++++ | .++++++++.++|+++|++|+++| |.| ++||+
T Consensus 154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~ 230 (313)
T COG0039 154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP 230 (313)
T ss_pred HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence 99999999999999999999998 8999999999975 2 233568899999999999999987 444 99999
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 018314 256 AYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIR 330 (358)
Q Consensus 256 A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~ 330 (358)
|.|+++++++|++|++ +++|++ +++|+| ++|+|||+|+++|++|+++++++ +|+++|+++|++|++.|+.+
T Consensus 231 A~a~a~~~~ail~d~~---~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~ 303 (313)
T COG0039 231 AAALARMVEAILRDEK---RVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKN 303 (313)
T ss_pred HHHHHHHHHHHHcCCC---ceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999973 588886 689999 88999999999999999999999 99999999999999999843
No 4
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=3.6e-63 Score=477.09 Aligned_cols=300 Identities=75% Similarity=1.146 Sum_probs=272.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~ 106 (358)
++.||+||||+|+||+++++.|++++..+||+|+|++++.++++||.|+.....+..+++++|++++++|||+||++||.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 45699999988999999999999999999999999988889999999998655666544567788999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC----cchHHHHHHHHHhCCCCCCceEeeccccHHHHH
Q 018314 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN----STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182 (358)
Q Consensus 107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d----~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~ 182 (358)
|+++|++|.+++..|+++++++++.+++++|+++++++|||+| ++++.+ ++.+| +||+|+||+|.||++||+
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~---~~~s~-~p~~~viG~~~LDs~Rl~ 172 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVL---KKAGV-YDPKKLFGVTTLDVVRAN 172 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH---HHcCC-CCcceEEEEecchHHHHH
Confidence 9999999999999999999999999999999999999999999 666544 67777 999999999889999999
Q ss_pred HHHHHHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHH
Q 018314 183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIF 262 (358)
Q Consensus 183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~l 262 (358)
+++|+++|+++.+|+++|+||||++++||+||++.+...+++++++++.++++++|++|+++|.|||+|+||+|.+++++
T Consensus 173 ~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~i 252 (323)
T PLN00106 173 TFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARF 252 (323)
T ss_pred HHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHHHHHH
Confidence 99999999999999999999997668999999997654566777899999999999999997657899999999999999
Q ss_pred HHHHHccCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 018314 263 ADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIR 330 (358)
Q Consensus 263 i~ail~~~~~~~~v~~~s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~ 330 (358)
+++|++++++++.++|+++++++|.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.
T Consensus 253 i~ail~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~ 320 (323)
T PLN00106 253 ADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKAS 320 (323)
T ss_pred HHHHHhccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999987766678999988777643499999999999999999988689999999999999999854
No 5
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.8e-63 Score=477.28 Aligned_cols=284 Identities=26% Similarity=0.373 Sum_probs=258.3
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-C--ccEEEEecCCccccccCCCCEEEEcC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-R--SEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~--~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
||+|||| |+||+++|+.|+.+++++||+|+|+++ ++|+++||+|+.. . ..++.+. +| +++++|||+||++|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~-y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GD-YDDCADADIIVITA 76 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CC-HHHhCCCCEEEECC
Confidence 8999998 999999999999999999999999987 7899999999753 2 2455543 34 68999999999999
Q ss_pred CCCCCCCCC--HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHH
Q 018314 105 GVPRKPGMT--RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA 181 (358)
Q Consensus 105 g~~~~~g~~--r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~ 181 (358)
|.|+++|++ |+|++..|++|++++++.|.+++|++++|++|||+|+||+++ ++.+| +|++||||+ |.|||+||
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~---~k~sg-~p~~rviG~gt~LDs~R~ 152 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA---ATEFD-YPANKVIGTGTMLDTARL 152 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH---HHHhC-cChhheecccchHHHHHH
Confidence 999999999 699999999999999999999999999999999999999987 78998 999999999 89999999
Q ss_pred HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-CC---------CHHHHHHHHHHHhcCcceEEeeccCCCCc
Q 018314 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL---------ADEDIKALTKRTQDGGTEVVEAKAGKGSA 251 (358)
Q Consensus 182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~~---------~~~~~~~l~~~v~~~~~~i~~~~~gkg~t 251 (358)
++++|+++|+++++|+++||||||+ +++|+||++++++ ++ ++++++++.++++++|++|++ +||+|
T Consensus 153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~KG~t 228 (307)
T cd05290 153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN---RKGWT 228 (307)
T ss_pred HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH---ccCee
Confidence 9999999999999999999999998 8999999999864 21 223478999999999999998 57899
Q ss_pred cchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314 252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI 329 (358)
Q Consensus 252 ~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~ 329 (358)
+|++|.++++++++|+++.+ .++|++ +++|+| ++|+|+|+||+||++|+++++++ +|+++|+++|++|++.|++
T Consensus 229 ~~~ia~a~~~ii~ail~d~~---~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~ 304 (307)
T cd05290 229 NAGIAKSASRLIKAILLDER---SILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRE 304 (307)
T ss_pred hHHHHHHHHHHHHHHHhCCC---eEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998863 578876 568888 68999999999999999999998 9999999999999999984
No 6
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-62 Score=470.12 Aligned_cols=299 Identities=58% Similarity=0.879 Sum_probs=269.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~ 106 (358)
+|.||+||||+|+||+++++.|+..+..+||+|+|++.+.++++||+|+.....+...++..+.+++++|||+||+++|.
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 45699999988999999999999999999999999955899999999987644555433223436899999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH-HHHHHhCCCCCCceEeeccccHHHHHHHH
Q 018314 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA-EVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185 (358)
Q Consensus 107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~-~~~~~sg~~~~~kviG~t~lds~R~~~~l 185 (358)
|++++++|.+++..|+++++++++.|++++|+++++++|||+|+++++++ .+++.+| +||+||||++.|||+||++++
T Consensus 87 ~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg-~p~~~viG~g~LDs~R~r~~l 165 (321)
T PTZ00325 87 PRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGV-YDPRKLFGVTTLDVVRARKFV 165 (321)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccC-CChhheeechhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999874 2346677 999999999779999999999
Q ss_pred HHHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHHHH
Q 018314 186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADA 265 (358)
Q Consensus 186 a~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~a 265 (358)
|+++|++|++|+++||||||++++||+||++ +.++++++++++.++++++|++|++.|.|||+|+||+|.++++++++
T Consensus 166 a~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~--g~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~a 243 (321)
T PTZ00325 166 AEALGMNPYDVNVPVVGGHSGVTIVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTS 243 (321)
T ss_pred HHHhCcChhheEEEEEeecCCcccccchhcc--CCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999984699999999 45787778999999999999999998767799999999999999999
Q ss_pred HHccCCCCCcEEEeeeecCCC-CCccEEEEeEEEcCCcEEEEec-CCCCCHHHHHHHHHHHHHHHH
Q 018314 266 CLKGLNGVPDVVECSFVQSTV-TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEGLEKLNPTFHI 329 (358)
Q Consensus 266 il~~~~~~~~v~~~s~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~-l~~L~~~E~~~L~~s~~~L~~ 329 (358)
|+++..+++.++++++++++| .+|+|+|+||++|++|++++++ + +|+++|+++|++|++.|++
T Consensus 244 il~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~-~L~~~E~~~l~~S~~~i~~ 308 (321)
T PTZ00325 244 VLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIG-PLNAYEEELLEAAVPDLKK 308 (321)
T ss_pred HHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHHHHHHHH
Confidence 998755455688888889988 6799999999999999999999 6 9999999999999999983
No 7
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=1.2e-62 Score=474.14 Aligned_cols=296 Identities=30% Similarity=0.384 Sum_probs=263.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCC----cHHHHHHhhcCCCC--ccEEEEecCCcccccc
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQAL 94 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al 94 (358)
++|.||+||||+|+||+++++.|+.+++++ ||+|+|+++ ++|+++||+|+..+ ..++.. .+.++++
T Consensus 1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~---~~~~~~~ 77 (323)
T TIGR01759 1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT---TDPEEAF 77 (323)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe---cChHHHh
Confidence 368899999988999999999999999999 999999954 69999999998732 223332 2337899
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHh-CCCCCCceEe
Q 018314 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKA-GTYNEKKLFG 172 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~s-g~~~~~kviG 172 (358)
+|||+||++||.|+++||+|.|++..|+++++++++.|.+++| ++++|++|||+|+||+++ ++.+ | ||++||||
T Consensus 78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~k~s~g-~p~~rViG 153 (323)
T TIGR01759 78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA---SKNAPD-IPPKNFSA 153 (323)
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH---HHHcCC-CCHHHEEE
Confidence 9999999999999999999999999999999999999999998 999999999999999987 7889 7 99999999
Q ss_pred eccccHHHHHHHHHHHcCCCCCCCc-eEEEeecCCcccccccccccCCC-C----CCHHH--HHHHHHHHhcCcceEEee
Q 018314 173 VTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEA 244 (358)
Q Consensus 173 ~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~~ 244 (358)
+|.||++||++++|+++|+++++|+ .+||||||+ +++|+||++++++ + ++++. +++|.+++++++++|++
T Consensus 154 ~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~- 231 (323)
T TIGR01759 154 MTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIE- 231 (323)
T ss_pred eeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHh-
Confidence 9999999999999999999999995 569999998 8999999999864 3 23332 68999999999999998
Q ss_pred ccCCCCccc-hHHHHHHHHHHHHHccCCCCCcEEEee-eecC-CC--CCccEEEEeEEEcCCcEEEEec-CCCCCHHHHH
Q 018314 245 KAGKGSATL-SMAYAGAIFADACLKGLNGVPDVVECS-FVQS-TV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQE 318 (358)
Q Consensus 245 ~~gkg~t~~-s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~-~~--~~d~~~s~Pv~vg~~Gv~~i~~-l~~L~~~E~~ 318 (358)
+||+++| ++|.++++++++|+++++. +.++|++ +++| +| |+|+|||+||++|++|++++++ + +|+++|++
T Consensus 232 --~kG~t~~~~~a~a~~~iv~ail~~~~~-~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~ 307 (323)
T TIGR01759 232 --ARGASSAASAANAAIDHVRDWVTGTPE-GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRG 307 (323)
T ss_pred --ccCCcchHHHHHHHHHHHHHHHcCCCC-CcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHH
Confidence 5688999 4779999999999999732 2588987 6788 88 4899999999999999999999 7 99999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 018314 319 GLEKLNPTFHIRKLFQ 334 (358)
Q Consensus 319 ~L~~s~~~L~~~~~~~ 334 (358)
+|++|++.|++++.+|
T Consensus 308 ~l~~sa~~lk~~~~~~ 323 (323)
T TIGR01759 308 KLDATEDELLEEKEEA 323 (323)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999888664
No 8
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=6e-62 Score=467.95 Aligned_cols=285 Identities=29% Similarity=0.435 Sum_probs=258.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-C--ccEEEEecCCccccccCCCCEEE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-R--SEVAGYMGNDQLGQALEDSDVVI 101 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~--~~v~~~~~~~d~~~al~~aDiVI 101 (358)
+.+||+|||| |.||+++++.|+..++.+||+|||+++ +.|+++||+|+.. . ..+.. ++| +++++|||+||
T Consensus 2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~---~~d-y~~~~~adivv 76 (312)
T cd05293 2 PRNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEA---DKD-YSVTANSKVVI 76 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEE---CCC-HHHhCCCCEEE
Confidence 3469999997 999999999999999999999999987 7899999999872 2 23432 345 46799999999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHH
Q 018314 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR 180 (358)
Q Consensus 102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R 180 (358)
+++|.|+++||+|.|++.+|+++++++++.|++++|++++|++|||+|++|+++ ++++| +|++||||+ |.||++|
T Consensus 77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~---~k~sg-~p~~~viG~gt~Ld~~R 152 (312)
T cd05293 77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA---WKLSG-LPKHRVIGSGCNLDSAR 152 (312)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH---HHHhC-CCHHHEEecCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999887 78888 999999999 8999999
Q ss_pred HHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C-----------CCHHHHHHHHHHHhcCcceEEeeccCC
Q 018314 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEVVEAKAGK 248 (358)
Q Consensus 181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i~~~~~gk 248 (358)
+++++|+++++++++|+++||||||+ ++||+||++++++ + .++++++++.++++++|++|++ +|
T Consensus 153 ~~~~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~k 228 (312)
T cd05293 153 FRYLIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK---LK 228 (312)
T ss_pred HHHHHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHH---hc
Confidence 99999999999999999999999998 8999999999864 2 1234588999999999999998 56
Q ss_pred CCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 018314 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNP 325 (358)
Q Consensus 249 g~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~ 325 (358)
|+|+|++|.++++++++|+++.+ .++|++ +++|.| ++|++||+||++|++|+++++++ +|+++|+++|++|++
T Consensus 229 g~t~~~~a~a~~~ii~ail~d~~---~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~ 304 (312)
T cd05293 229 GYTSWAIGLSVADLVDAILRNTG---RVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSAD 304 (312)
T ss_pred CCchHHHHHHHHHHHHHHHcCCC---eEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHH
Confidence 89999999999999999998864 577776 568877 58999999999999999999998 999999999999999
Q ss_pred HHH
Q 018314 326 TFH 328 (358)
Q Consensus 326 ~L~ 328 (358)
.|+
T Consensus 305 ~i~ 307 (312)
T cd05293 305 TLW 307 (312)
T ss_pred HHH
Confidence 998
No 9
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=9.2e-62 Score=441.45 Aligned_cols=290 Identities=26% Similarity=0.409 Sum_probs=264.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC---CccEEEEecCCccccccCCCCE
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT---RSEVAGYMGNDQLGQALEDSDV 99 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~~~d~~~al~~aDi 99 (358)
+.+..||+|+|+ |+||.+.++.+.++++.+|++|+|.++ ++|++|||+|... .+++.. ..| +.+.+++++
T Consensus 17 ~~~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~D-y~~sa~S~l 91 (332)
T KOG1495|consen 17 EFKHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKD-YSVSANSKL 91 (332)
T ss_pred cccCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCc-ccccCCCcE
Confidence 344679999998 999999999999999999999999988 7999999999863 345554 346 578899999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccH
Q 018314 100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV 178 (358)
Q Consensus 100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds 178 (358)
||+|||..+++|++|++++++|+.|++.+.+.+.+|.||+++|++|||+|+|||++ ||.+| ||++||||. |+|||
T Consensus 92 vIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~---wKLSg-fP~nRViGsGcnLDs 167 (332)
T KOG1495|consen 92 VIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT---WKLSG-FPKNRVIGSGCNLDS 167 (332)
T ss_pred EEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH---HHHcC-CcccceeccCcCccH
Confidence 99999999999999999999999999999999999999999999999999999986 89999 999999999 89999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC------------CCCHHHHHHHHHHHhcCcceEEeecc
Q 018314 179 VRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKA 246 (358)
Q Consensus 179 ~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~ 246 (358)
+|||++++++||++|.++++|++||||+ +.||+||...+.+ ..+++.|+++.++|.+.+|+|+++
T Consensus 168 aRFryLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevikl-- 244 (332)
T KOG1495|consen 168 ARFRYLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKL-- 244 (332)
T ss_pred HHHHHHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 9999999999999999999999999999 8999999998742 256678999999999999999995
Q ss_pred CCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHH
Q 018314 247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKL 323 (358)
Q Consensus 247 gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s 323 (358)
||+|.|++|.++++++++|+.|.+ .+.|++ .+.|.| .+|+|+|+||++|++|+..++.. +|+++|.++|++|
T Consensus 245 -KGyTswaIglsva~l~~ail~n~~---~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kS 319 (332)
T KOG1495|consen 245 -KGYTSWAIGLSVADLAQAILRNLR---RIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKS 319 (332)
T ss_pred -cCchHHHHHHHHHHHHHHHHhCcC---ceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHH
Confidence 599999999999999999999986 477777 467877 67999999999999999999999 9999999999999
Q ss_pred HHHHHHHhh
Q 018314 324 NPTFHIRKL 332 (358)
Q Consensus 324 ~~~L~~~~~ 332 (358)
++.|. +.|
T Consensus 320 a~tl~-~~q 327 (332)
T KOG1495|consen 320 AKTLL-EAQ 327 (332)
T ss_pred HHHHH-HHH
Confidence 99998 444
No 10
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=3.4e-61 Score=468.06 Aligned_cols=285 Identities=26% Similarity=0.419 Sum_probs=258.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEcCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
+||+|||| |+||+++++.|+..++.+||+|+|+++ +.|+++||+|+.. ........ ++| +++++|||+||++||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~-~~d-y~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILA-STD-YAVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEe-CCC-HHHhCCCCEEEECCC
Confidence 79999997 999999999999999999999999987 6899999999863 22233322 245 577999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHH
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF 184 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~ 184 (358)
.|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++ ++++| +|++||||+ |.||++|++++
T Consensus 115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~---~k~sg-~p~~rviG~gt~LDs~R~r~~ 190 (350)
T PLN02602 115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA---WKLSG-FPANRVIGSGTNLDSSRFRFL 190 (350)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH---HHHhC-CCHHHEEeecchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 78898 999999999 69999999999
Q ss_pred HHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C-----------CCHHHHHHHHHHHhcCcceEEeeccCCCCcc
Q 018314 185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEVVEAKAGKGSAT 252 (358)
Q Consensus 185 la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~ 252 (358)
+|+++|+++++|+++||||||+ ++||+||++++++ + +++++++++.+++++++++|++ +||+|+
T Consensus 191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~KG~t~ 266 (350)
T PLN02602 191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIK---LKGYTS 266 (350)
T ss_pred HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHh---cCCccH
Confidence 9999999999999999999998 8999999998853 2 3345578999999999999998 578999
Q ss_pred chHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC-C--CccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 018314 253 LSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV-T--ELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH 328 (358)
Q Consensus 253 ~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~-~--~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~ 328 (358)
|++|.++++++++|+++.+ .++|++. ++|+| . +++|+|+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus 267 ~gia~a~a~ii~ail~d~~---~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~l~~sa~~l~ 342 (350)
T PLN02602 267 WAIGYSVASLVRSLLRDQR---RIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAERLRKSAKTLW 342 (350)
T ss_pred HHHHHHHHHHHHHHHhcCC---CeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999874 5888875 67888 3 7899999999999999999998 999999999999999998
No 11
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-60 Score=459.59 Aligned_cols=290 Identities=27% Similarity=0.424 Sum_probs=262.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEE
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVI 101 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVI 101 (358)
.++++||+|||| |.||+++++.|+..++++||+|+|+++ ++|+++||.|+.. ..++...+ ++ +++++|||+||
T Consensus 3 ~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~-~~~~~~adivI 78 (315)
T PRK00066 3 KKQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GD-YSDCKDADLVV 78 (315)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CC-HHHhCCCCEEE
Confidence 345679999998 999999999999999999999999987 6899999999863 22445442 34 68899999999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHH
Q 018314 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR 180 (358)
Q Consensus 102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R 180 (358)
++||.|+++|++|.|++..|+++++++++.+++++|++|+|++|||+|++|+++ ++++| +|++||||+ |.||+.|
T Consensus 79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~---~k~sg-~p~~~viG~gt~LDs~R 154 (315)
T PRK00066 79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT---WKLSG-FPKERVIGSGTSLDSAR 154 (315)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH---HHHhC-CCHHHEeecCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999876 78888 999999999 7999999
Q ss_pred HHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----------CCHHHHHHHHHHHhcCcceEEeeccCCC
Q 018314 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVVEAKAGKG 249 (358)
Q Consensus 181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i~~~~~gkg 249 (358)
+++.+|+++|+++++|+++|||+||+ +++|+||++++++ + +++++++++.+++++++++|++ +||
T Consensus 155 ~~~~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kg 230 (315)
T PRK00066 155 FRYMLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIE---KKG 230 (315)
T ss_pred HHHHHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHh---cCC
Confidence 99999999999999999999999998 8999999999863 1 3446688999999999999998 568
Q ss_pred CccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 018314 250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF 327 (358)
Q Consensus 250 ~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L 327 (358)
+++|++|.++++++++|+++.+ .++|++ +++|+| ++++|||+||++|++||++++++ +|+++|+++|++|++.|
T Consensus 231 ~t~~~~a~~~~~i~~ail~~~~---~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l 306 (315)
T PRK00066 231 ATYYGIAMALARITKAILNNEN---AVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVL 306 (315)
T ss_pred eehHHHHHHHHHHHHHHHcCCC---eEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHH
Confidence 9999999999999999999754 588887 468888 68999999999999999999998 99999999999999999
Q ss_pred HHH
Q 018314 328 HIR 330 (358)
Q Consensus 328 ~~~ 330 (358)
+..
T Consensus 307 ~~~ 309 (315)
T PRK00066 307 KEI 309 (315)
T ss_pred HHH
Confidence 844
No 12
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.5e-60 Score=433.97 Aligned_cols=322 Identities=69% Similarity=1.035 Sum_probs=303.2
Q ss_pred cccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC
Q 018314 16 AGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE 95 (358)
Q Consensus 16 ~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~ 95 (358)
.-.+.|++.++++.||+|+||+|++|+.+.++|.+++.++++.|||+....|.+.||+|...+..+.+|++.+.++++++
T Consensus 16 ~~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~ 95 (345)
T KOG1494|consen 16 GPKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALK 95 (345)
T ss_pred CCcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhc
Confidence 44566888888999999999999999999999999999999999999989999999999998889999988888999999
Q ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeecc
Q 018314 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT 175 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~ 175 (358)
+||+|||.||+||||||+|.|++..|+.|+++++..+.++||++.+.++|||++.+.+++++++|..|.|+|+|++|+|.
T Consensus 96 ~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTt 175 (345)
T KOG1494|consen 96 GADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTT 175 (345)
T ss_pred CCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHcCCCC-CCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccch
Q 018314 176 LDVVRAKTFYAGKANVNV-AEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254 (358)
Q Consensus 176 lds~R~~~~la~~l~v~~-~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s 254 (358)
||..|.++++++.++++| .+++++|+|+|.+.+++|++|+..+-..+++++++.|+.+++.+|.|+++.|.|+|++.+|
T Consensus 176 LDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLS 255 (345)
T KOG1494|consen 176 LDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLS 255 (345)
T ss_pred hhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchhhh
Confidence 999999999999999999 5699999999988899999999988667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH--HHhh
Q 018314 255 MAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH--IRKL 332 (358)
Q Consensus 255 ~A~a~~~li~ail~~~~~~~~v~~~s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~--~~~~ 332 (358)
+|+|.++++.+++++.+++..++.|+|+....-+-.||+.|+++|++||+++..+++||++|++.|+.+..+|+ .+|+
T Consensus 256 MAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~sI~KG 335 (345)
T KOG1494|consen 256 MAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPELKKSIEKG 335 (345)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCCCccCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999877788899987764356799999999999999999999999999999999999999 6677
Q ss_pred hhHHH
Q 018314 333 FQILQ 337 (358)
Q Consensus 333 ~~~~~ 337 (358)
+++++
T Consensus 336 v~F~~ 340 (345)
T KOG1494|consen 336 VTFVK 340 (345)
T ss_pred HHHHh
Confidence 66544
No 13
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=3.3e-61 Score=460.47 Aligned_cols=280 Identities=29% Similarity=0.467 Sum_probs=254.5
Q ss_pred EEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314 33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (358)
Q Consensus 33 IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~ 108 (358)
|||| |+||+++++.|+..++++||+|+|+++ ++|+++||+|+.. ...++... +| +++++|||+||++||.|+
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~-~~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS--GD-YSDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec--CC-HHHHCCCCEEEECCCCCC
Confidence 6898 999999999999999999999999987 7999999999863 22344432 34 689999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHHHHH
Q 018314 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAG 187 (358)
Q Consensus 109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~la~ 187 (358)
++||+|.|++.+|+++++++++.|++++|++++|++|||+|++|+++ ++++| +|++||||+ |.||++|+++++|+
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~---~~~sg-~p~~~viG~gt~LDs~R~~~~la~ 152 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA---WKLSG-FPKNRVIGSGTVLDTARLRYLLAE 152 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH---HHHhC-CCHHHEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887 78888 999999999 79999999999999
Q ss_pred HcCCCCCCCceEEEeecCCcccccccccccCCC-C---C-------CHHHHHHHHHHHhcCcceEEeeccCCCCccchHH
Q 018314 188 KANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---L-------ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256 (358)
Q Consensus 188 ~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~---~-------~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A 256 (358)
++++++++|+++|||+||+ +++|+||++++++ | + ++++++++.++++++|++|++ +||+|+|++|
T Consensus 153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kG~t~~~~a 228 (299)
T TIGR01771 153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIG 228 (299)
T ss_pred HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhh---cCCeeeHHHH
Confidence 9999999999999999998 8999999999864 2 2 133477999999999999999 5789999999
Q ss_pred HHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 018314 257 YAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH 328 (358)
Q Consensus 257 ~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~ 328 (358)
.++++++++|+++++ .++|++ +++|+| .+|+|||+||+||++|+++++++ +|+++|+++|++|++.|+
T Consensus 229 ~a~~~~i~ail~d~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik 298 (299)
T TIGR01771 229 MAVARIVEAILHDEN---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLK 298 (299)
T ss_pred HHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHh
Confidence 999999999999864 588886 678888 56899999999999999999998 999999999999999987
No 14
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=6.5e-61 Score=462.60 Aligned_cols=295 Identities=26% Similarity=0.354 Sum_probs=261.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCC----cHHHHHHhhcCCC--CccEEEEecCCccccccC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALE 95 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~ 95 (358)
+|+||+||||+|.||+++++.|+..++++ ||+|+|+++ ++|+++||+|+.. ...++.+ +++ +++++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~~ 79 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAFK 79 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHhC
Confidence 57899999988999999999999999888 999999954 6899999999862 1234443 233 78999
Q ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT 174 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t 174 (358)
|||+||++||.|+++|++|.|++..|+++++++++.|.+++ |++++|++|||+|+||+++ ++.+|+||++||||+|
T Consensus 80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~k~s~g~p~~rViG~t 156 (326)
T PRK05442 80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA---MKNAPDLPAENFTAMT 156 (326)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH---HHHcCCCCHHHEEeee
Confidence 99999999999999999999999999999999999999988 7999999999999999987 7899449999999999
Q ss_pred cccHHHHHHHHHHHcCCCCCCCceE-EEeecCCcccccccccccCCC-C----CCHHH--HHHHHHHHhcCcceEEeecc
Q 018314 175 TLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEAKA 246 (358)
Q Consensus 175 ~lds~R~~~~la~~l~v~~~~v~~~-v~G~hg~~~~vp~~S~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~~~~ 246 (358)
.||++||++++|+++++++++|+++ ||||||+ ++||+||++++++ + +++++ ++++.+++++++++|++
T Consensus 157 ~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~--- 232 (326)
T PRK05442 157 RLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIE--- 232 (326)
T ss_pred HHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHh---
Confidence 9999999999999999999999996 5899998 8999999999964 2 33433 67999999999999998
Q ss_pred CCCCccchHHHH-HHHHHHHHHccCCCCCcEEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEec-CCCCCHHHHHHHH
Q 018314 247 GKGSATLSMAYA-GAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEGLE 321 (358)
Q Consensus 247 gkg~t~~s~A~a-~~~li~ail~~~~~~~~v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~-l~~L~~~E~~~L~ 321 (358)
+||+++|++|.+ +++++++|+++.+ ++.++|++. ++|+| ++++|||+||++| +|+++++. + +|+++|+++|+
T Consensus 233 ~kG~t~~~~a~~~~~~iv~ail~~~~-~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l-~L~~~E~~~l~ 309 (326)
T PRK05442 233 ARGASSAASAANAAIDHVRDWVLGTP-EGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGL-EIDDFSREKID 309 (326)
T ss_pred CcCCccHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCC-CCCHHHHHHHH
Confidence 568999999999 5999999999852 135888875 68888 5899999999999 99999976 6 99999999999
Q ss_pred HHHHHHHHHhhhh
Q 018314 322 KLNPTFHIRKLFQ 334 (358)
Q Consensus 322 ~s~~~L~~~~~~~ 334 (358)
+|++.|++++.+.
T Consensus 310 ~s~~~l~~~~~~~ 322 (326)
T PRK05442 310 ATLAELEEERDAV 322 (326)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999777654
No 15
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=4.2e-60 Score=455.60 Aligned_cols=304 Identities=55% Similarity=0.827 Sum_probs=267.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHh-CCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~-~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~ 106 (358)
|||+||||+|.||+++++.+.. .+...+++|+|+++ ..++++|+.|......+.++ ..+|++++++|+|+||+++|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence 6999999989999999999866 56778999999876 67788999986422345542 235667899999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHH-HHhCCCCCCceEeeccccHHHHHHHH
Q 018314 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVF-KKAGTYNEKKLFGVTTLDVVRAKTFY 185 (358)
Q Consensus 107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~-~~sg~~~~~kviG~t~lds~R~~~~l 185 (358)
+++++++|.+++..|+++++++++.|++++|+++++++|||+|+||+++++.. +.+| +|++||||+|.|||+|+++++
T Consensus 80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg-~p~~rvig~~~Lds~R~~~~i 158 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGV-YDKNKLFGVTTLDVIRSETFV 158 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcC-CCHHHEEeeecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875433 6677 999999999889999999999
Q ss_pred HHHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHHHH
Q 018314 186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADA 265 (358)
Q Consensus 186 a~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~a 265 (358)
|+++|+++++|+++||||||++++||+||++ -+.++++++++++.+++++++++|++.|.|+|+|+||+|.++++++++
T Consensus 159 a~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~a 237 (312)
T PRK05086 159 AELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLS 237 (312)
T ss_pred HHHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999776899999999 444787777999999999999999997667799999999999999999
Q ss_pred HHccCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH--HHhhhhH
Q 018314 266 CLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH--IRKLFQI 335 (358)
Q Consensus 266 il~~~~~~~~v~~~s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~--~~~~~~~ 335 (358)
|+++..+++.++|+++++++-..++|||+||++|++|+++++++++|+++|+++|++|++.|+ .++++.+
T Consensus 238 i~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~~~g~~~ 309 (312)
T PRK05086 238 LVRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEEF 309 (312)
T ss_pred HHhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998866556688888776653468999999999999999999987899999999999999998 3444443
No 16
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.7e-60 Score=459.62 Aligned_cols=295 Identities=29% Similarity=0.360 Sum_probs=261.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCC----cHHHHHHhhcCCC--CccEEEEecCCccccccCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDS 97 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~a 97 (358)
.||+||||+|+||+++++.|+.+++++ +|+|+|+++ ++++++||.|+.. ....... ++.+++++||
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~---~~~~~~~~~a 77 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT---TDPEEAFKDV 77 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe---cChHHHhCCC
Confidence 389999988999999999999999888 499999985 6899999999852 1223332 2347899999
Q ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccc
Q 018314 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176 (358)
Q Consensus 98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~l 176 (358)
|+||++||.|+++|++|.|++..|+++++++++.|++++ |++++|++|||+|+||+++ ++.+|.+|++||||+|.|
T Consensus 78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~sg~~p~~~vig~t~L 154 (323)
T cd00704 78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA---LKNAPNLPPKNFTALTRL 154 (323)
T ss_pred CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH---HHHcCCCCHHHEEEeeHH
Confidence 999999999999999999999999999999999999996 9999999999999999986 788984599999999999
Q ss_pred cHHHHHHHHHHHcCCCCCCC-ceEEEeecCCcccccccccccCCC-C--------CCHH-HHHHHHHHHhcCcceEEeec
Q 018314 177 DVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-N--------LADE-DIKALTKRTQDGGTEVVEAK 245 (358)
Q Consensus 177 ds~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~S~~~v~~-~--------~~~~-~~~~l~~~v~~~~~~i~~~~ 245 (358)
|++||++++|++++++|++| +++||||||+ +++|+||++++++ + ++++ ..++|.+++++++++|++
T Consensus 155 Ds~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~-- 231 (323)
T cd00704 155 DHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIK-- 231 (323)
T ss_pred HHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHh--
Confidence 99999999999999999999 5689999999 8999999999864 2 3333 267899999999999998
Q ss_pred cCCCCccch-HHHHHHHHHHHHHccCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHH
Q 018314 246 AGKGSATLS-MAYAGAIFADACLKGLNGVPDVVECS-FVQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL 320 (358)
Q Consensus 246 ~gkg~t~~s-~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L 320 (358)
+||+++|+ +|.++++++++|+++.+++ .++|++ +++|+| |+|+|||+||++|++||++++++ +|+++|+++|
T Consensus 232 -~kg~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l 308 (323)
T cd00704 232 -KRGASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREKL 308 (323)
T ss_pred -ccCcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHHH
Confidence 46889896 6999999999999998644 589997 678887 47999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHhhhhH
Q 018314 321 EKLNPTFHIRKLFQI 335 (358)
Q Consensus 321 ~~s~~~L~~~~~~~~ 335 (358)
++|++.|+.|+.+++
T Consensus 309 ~~s~~~l~~~~~~~~ 323 (323)
T cd00704 309 KATEEELIEEKEIAL 323 (323)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999998863
No 17
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=5.9e-60 Score=462.45 Aligned_cols=313 Identities=26% Similarity=0.279 Sum_probs=268.0
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEE--ecCC--cHHHHHHhhcCCC--CccEEEEecCCccc
Q 018314 23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALY--DIAN--TPGVAADVGHINT--RSEVAGYMGNDQLG 91 (358)
Q Consensus 23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~--D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~ 91 (358)
++++++.||+||||+|+||+++++.|+.+++++ +|+|+ |+++ ++|+++||.|+.+ ..++... ++| +
T Consensus 39 ~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y 115 (387)
T TIGR01757 39 KSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-Y 115 (387)
T ss_pred hcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-H
Confidence 344568999999988999999999999999988 57777 6555 7899999999872 2244433 233 7
Q ss_pred cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCce
Q 018314 92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL 170 (358)
Q Consensus 92 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kv 170 (358)
++++|||+||++||.|+++|++|.|++..|++|++++++.|.+++ |++++|++|||+|+||+++ ++.+| ++|+|+
T Consensus 116 ~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~---~k~sg-~~~~rv 191 (387)
T TIGR01757 116 EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA---MKNAP-NIPRKN 191 (387)
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH---HHHcC-CCcccE
Confidence 899999999999999999999999999999999999999999987 9999999999999999987 78898 899999
Q ss_pred Eee-ccccHHHHHHHHHHHcCCCCCCC-ceEEEeecCCcccccccccccCCC-CC----CHHH--HHHHHHHHhcCcceE
Q 018314 171 FGV-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-NL----ADED--IKALTKRTQDGGTEV 241 (358)
Q Consensus 171 iG~-t~lds~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~S~~~v~~-~~----~~~~--~~~l~~~v~~~~~~i 241 (358)
||+ |.||++||+++||+++++++++| +++||||||+ ++||+||++++++ ++ ++.+ ++++.++++++|++|
T Consensus 192 iG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eI 270 (387)
T TIGR01757 192 FHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGAL 270 (387)
T ss_pred EEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHH
Confidence 999 89999999999999999999999 4999999998 8999999999864 33 2222 689999999999999
Q ss_pred EeeccCCCCccc-hHHHHHHHHHHHHHccCCCCCcEEEeee-ecCC-C--CCccEEEEeEEEcCCcEEEEe-cCCCCCHH
Q 018314 242 VEAKAGKGSATL-SMAYAGAIFADACLKGLNGVPDVVECSF-VQST-V--TELPFFASKVRLGKNGVEEVL-GLGPLSDF 315 (358)
Q Consensus 242 ~~~~~gkg~t~~-s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~-~--~~d~~~s~Pv~vg~~Gv~~i~-~l~~L~~~ 315 (358)
++ +||++.| ++|.++++++++|+++.+ ++.++|++. ++|+ | ++|+|||+||++|++|+++++ ++ +|+++
T Consensus 271 i~---~KG~t~~~s~a~ai~~~i~ai~~g~d-~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~ 345 (387)
T TIGR01757 271 IK---KWGRSSAASTAVSIADAIKSLVVPTP-EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDF 345 (387)
T ss_pred Hh---ccCchhHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHH
Confidence 98 5676666 999999999999995443 235888875 5885 8 589999999999999999996 77 99999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhccccccccccc
Q 018314 316 EQEGLEKLNPTFHIRKLFQILQFFRKCCTCCSWH 349 (358)
Q Consensus 316 E~~~L~~s~~~L~~~~~~~~~~~~~~~~~~~~~~ 349 (358)
|+++|++|++.|+.|+.++ ++.|.++-.-|-.+
T Consensus 346 E~~~l~~Sa~~L~~e~~~~-~~~~~~~~~~~~~~ 378 (387)
T TIGR01757 346 LRERIRKSEDELLKEKECV-AHLIGEGNAYCAVP 378 (387)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhhcccccccCCC
Confidence 9999999999999888666 55565555555443
No 18
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=5.8e-60 Score=468.75 Aligned_cols=297 Identities=26% Similarity=0.289 Sum_probs=262.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhC-------CCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccc
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLN-------PLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQA 93 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~-------~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a 93 (358)
.+++.||+||||+|+||+++++.|+.+ ++..||+|+|+++ ++|+++||+|+.+ ..++...+ +| +++
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~--~~-ye~ 173 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGI--DP-YEV 173 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEec--CC-HHH
Confidence 356899999998899999999999998 7777999999988 7999999999873 22454332 34 789
Q ss_pred cCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-hCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-YCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172 (358)
Q Consensus 94 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG 172 (358)
++|||+||++||.|+++||+|.|++..|++|++++++.|.+ ++|++++|++|||+|+||+++ ++.+| ++++|+||
T Consensus 174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~---~k~sg-~~~~rViG 249 (444)
T PLN00112 174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC---LKNAP-NIPAKNFH 249 (444)
T ss_pred hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH---HHHcC-CCCcceEE
Confidence 99999999999999999999999999999999999999999 589999999999999999987 78898 89999999
Q ss_pred e-ccccHHHHHHHHHHHcCCCCCCC-ceEEEeecCCcccccccccccCCC-C----CCHHH--HHHHHHHHhcCcceEEe
Q 018314 173 V-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVE 243 (358)
Q Consensus 173 ~-t~lds~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~ 243 (358)
+ |.||++||+++||+++|+++++| +++||||||+ ++||+||++++++ + +++++ ++++.++++++|++|++
T Consensus 250 tgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~ 328 (444)
T PLN00112 250 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK 328 (444)
T ss_pred eeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh
Confidence 9 89999999999999999999999 5699999999 8999999999964 3 22323 68999999999999998
Q ss_pred eccCCCCccc-hHHHHHHHHHHHHHccCCCCCcEEEeee-ecC-CC--CCccEEEEeEEEcCCcEEEEe-cCCCCCHHHH
Q 018314 244 AKAGKGSATL-SMAYAGAIFADACLKGLNGVPDVVECSF-VQS-TV--TELPFFASKVRLGKNGVEEVL-GLGPLSDFEQ 317 (358)
Q Consensus 244 ~~~gkg~t~~-s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~-~~--~~d~~~s~Pv~vg~~Gv~~i~-~l~~L~~~E~ 317 (358)
+||+++| ++|.++++++++|+++.+ ++.++|++. ++| +| ++|+|||+||++|++|+++++ ++ +|+++|+
T Consensus 329 ---~kG~t~~~s~a~ai~~~I~ail~~~d-~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~ 403 (444)
T PLN00112 329 ---KWGRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLR 403 (444)
T ss_pred ---ccCchhHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHH
Confidence 5676776 999999999999995433 236899974 688 48 589999999999999999999 57 9999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 018314 318 EGLEKLNPTFHIRKLFQ 334 (358)
Q Consensus 318 ~~L~~s~~~L~~~~~~~ 334 (358)
++|++|++.|..|+.++
T Consensus 404 ~~l~~Sa~~L~~e~~~~ 420 (444)
T PLN00112 404 ERIKKSEAELLAEKRCV 420 (444)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999888766
No 19
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8.2e-60 Score=454.76 Aligned_cols=295 Identities=26% Similarity=0.344 Sum_probs=263.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCC----cHHHHHHhhcCCCC--ccEEEEecCCccccccC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALE 95 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al~ 95 (358)
+|+||+||||+|+||+++++.|+.+++++ ||+|+|+++ ++|+++||+|+..+ ..++.. ++| +++++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~ 77 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK 77 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence 46799999988999999999999999999 999999954 68999999998732 244543 233 78999
Q ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT 174 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t 174 (358)
|||+||++||.|+++|++|.+++..|+++++++++.|.+++ |++++|++|||+|+||+++ ++.+|++|++||||+|
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~sg~~p~~~ViG~t 154 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA---MKNAPDIPPDNFTAMT 154 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH---HHHcCCCChHheEEeh
Confidence 99999999999999999999999999999999999999999 5999999999999999987 7888559999999999
Q ss_pred cccHHHHHHHHHHHcCCCCCCCce-EEEeecCCcccccccccccCCC-C----CCHH--HHHHHHHHHhcCcceEEeecc
Q 018314 175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N----LADE--DIKALTKRTQDGGTEVVEAKA 246 (358)
Q Consensus 175 ~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~S~~~v~~-~----~~~~--~~~~l~~~v~~~~~~i~~~~~ 246 (358)
.||++||++.+|+++|+++++|++ +|||+||+ +++|+||++++++ + +.+. ++++|.+++++++++|++
T Consensus 155 ~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~--- 230 (322)
T cd01338 155 RLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIK--- 230 (322)
T ss_pred HHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHh---
Confidence 999999999999999999999998 56999998 8999999998864 2 3443 367999999999999998
Q ss_pred CCCCccchHH-HHHHHHHHHHHccCCCCCcEEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHH
Q 018314 247 GKGSATLSMA-YAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322 (358)
Q Consensus 247 gkg~t~~s~A-~a~~~li~ail~~~~~~~~v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~ 322 (358)
+||+++|++| .++++++++|+++.+. +.++|++. ++|+| |+++|||+||++|++||++++++ +|+++|+++|++
T Consensus 231 ~kG~t~~~~~a~a~~~iv~ail~~~~~-~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~ 308 (322)
T cd01338 231 ARGASSAASAANAAIDHMRDWVLGTPE-GDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKIDA 308 (322)
T ss_pred CcCCccHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHHH
Confidence 5689999999 5999999999998751 25888875 68888 58999999999999999999998 999999999999
Q ss_pred HHHHHHHHhhh
Q 018314 323 LNPTFHIRKLF 333 (358)
Q Consensus 323 s~~~L~~~~~~ 333 (358)
|++.|+.|+.+
T Consensus 309 s~~~l~~~~~~ 319 (322)
T cd01338 309 TLAELLEEREA 319 (322)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 20
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=1.1e-58 Score=445.30 Aligned_cols=285 Identities=30% Similarity=0.434 Sum_probs=256.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+||+|||+ |.||+++++.|+..++..+|+|+|+++ ++++++||.|... ...+.... .+ ++++++||+||+++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~-~~~l~~aDIVIita 76 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GD-YSDCKDADIVVITA 76 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CC-HHHhCCCCEEEEcc
Confidence 38999998 999999999999999888999999987 6889999998753 22333332 33 56799999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHH
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT 183 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~ 183 (358)
|.|+++|++|.|++.+|+++++++++.|++++|++++|++|||+|++|+++ ++++| +|++||||+ |.||++|+++
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~---~~~~g-~p~~~v~g~gt~LDs~R~~~ 152 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV---QKLSG-LPKNRVIGTGTSLDTARLRR 152 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH---HHHhC-cCHHHEeeccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987 67887 999999999 7999999999
Q ss_pred HHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C---------CCHHHHHHHHHHHhcCcceEEeeccCCCCccc
Q 018314 184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKGSATL 253 (358)
Q Consensus 184 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~ 253 (358)
++|+++++++++|+++|||+||+ +++|+||++++++ + +.+++++++.++++++|++|++ +||+++|
T Consensus 153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~---~kg~t~~ 228 (306)
T cd05291 153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYY 228 (306)
T ss_pred HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHH---ccCccHH
Confidence 99999999999999999999998 8999999999864 2 2345688999999999999998 5689999
Q ss_pred hHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314 254 SMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI 329 (358)
Q Consensus 254 s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~ 329 (358)
++|.++++++++|+++.+ .++|++ +++|+| ++|+|||+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus 229 ~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~ 302 (306)
T cd05291 229 GIATALARIVKAILNDEN---AILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKE 302 (306)
T ss_pred HHHHHHHHHHHHHHcCCC---EEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999754 588887 468888 77999999999999999999998 9999999999999999984
No 21
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=8.4e-59 Score=444.83 Aligned_cols=285 Identities=29% Similarity=0.430 Sum_probs=257.5
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCC-ccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~al~~aDiVIi~ag~~ 107 (358)
|+|||+ |.||+++++.|+..+++.||+|+|+++ +.++++||+|.... ...+.+. ++| +++++|||+||+++|.|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCC
Confidence 689998 999999999999999999999999987 78999999998743 2233332 244 57999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHHHH
Q 018314 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYA 186 (358)
Q Consensus 108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~la 186 (358)
+++|++|.+++.+|+++++++++.|+++||++|+|++|||+|++|+++ ++++| +|++||||+ |.||+.|+++++|
T Consensus 78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~---~~~sg-~~~~kviG~gt~lDs~r~~~~la 153 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA---QKLSG-LPKNRVIGSGTLLDSARFRSLLA 153 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH---HHHhC-cCHHHEEecCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 78898 999999999 7999999999999
Q ss_pred HHcCCCCCCCceEEEeecCCcccccccccccCCC-CC------CHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHH
Q 018314 187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL------ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAG 259 (358)
Q Consensus 187 ~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~~------~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~ 259 (358)
+++++++++|+++|+|+||+ ++||+||++++++ ++ +++.++++.+++++++++|++ +||+++|++|.++
T Consensus 154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~---~kg~t~~~~a~a~ 229 (300)
T cd00300 154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYGIATAI 229 (300)
T ss_pred HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---ccCcchHHHHHHH
Confidence 99999999999999999998 8999999999864 32 335588999999999999998 5689999999999
Q ss_pred HHHHHHHHccCCCCCcEEEeee-ecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 018314 260 AIFADACLKGLNGVPDVVECSF-VQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIR 330 (358)
Q Consensus 260 ~~li~ail~~~~~~~~v~~~s~-~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~ 330 (358)
++++++|+++.+ .++|+++ ++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|++.|++.
T Consensus 230 ~~~~~ai~~~~~---~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~ 298 (300)
T cd00300 230 ADIVKSILLDER---RVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEV 298 (300)
T ss_pred HHHHHHHHcCCC---eEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999854 5888875 68888 68999999999999999999998 99999999999999999843
No 22
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=6.1e-58 Score=442.18 Aligned_cols=290 Identities=33% Similarity=0.541 Sum_probs=259.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEEE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII 102 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVIi 102 (358)
+.+||+|||| |+||+++++.++..++ .+|+|||+++ +.++++|+.|... ....+.. .++|+ ++++|||+||+
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-~~~d~-~~l~~ADiVVi 79 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-GTNNY-EDIKDSDVVVI 79 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEE-eCCCH-HHhCCCCEEEE
Confidence 4569999998 9999999999999886 6899999987 6789999999753 1122322 23565 59999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec-cccHHHH
Q 018314 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRA 181 (358)
Q Consensus 103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t-~lds~R~ 181 (358)
++|.|+++|++|.|++..|.++++++++.|+++||++|+|++|||+|++|+++ ++.++ +|++|++|+| .||++|+
T Consensus 80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~---~~~s~-~p~~rviG~gt~lds~R~ 155 (319)
T PTZ00117 80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF---QEKSG-IPSNKICGMAGVLDSSRF 155 (319)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH---HHhhC-CCcccEEEecchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876 67787 9999999995 8999999
Q ss_pred HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C---------CCHHHHHHHHHHHhcCcceEEeeccCCCCc
Q 018314 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKGSA 251 (358)
Q Consensus 182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t 251 (358)
++++|+++|+++++|+++|+||||+ +++|+||++++++ | +++++++++.+++++++++|++.+ |||++
T Consensus 156 ~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t 233 (319)
T PTZ00117 156 RCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSA 233 (319)
T ss_pred HHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Confidence 9999999999999999999999998 8999999998853 1 455668899999999999999975 78999
Q ss_pred cchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314 252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI 329 (358)
Q Consensus 252 ~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~ 329 (358)
+||+|.++++++++|++|.+ .++|++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus 234 ~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~~ 309 (319)
T PTZ00117 234 FFAPAAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQE 309 (319)
T ss_pred HHHHHHHHHHHHHHHhcCCC---eEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999863 588997 578888 46899999999999999999998 9999999999999999984
Q ss_pred H
Q 018314 330 R 330 (358)
Q Consensus 330 ~ 330 (358)
.
T Consensus 310 ~ 310 (319)
T PTZ00117 310 L 310 (319)
T ss_pred H
Confidence 3
No 23
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=7.9e-58 Score=441.23 Aligned_cols=286 Identities=34% Similarity=0.595 Sum_probs=258.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC----CccEEEEecCCccccccCCCCEE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVV 100 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiV 100 (358)
+.+||+|||| |+||+++++.++..++ .+|+|+|+++ +.++++|+.|... ..+++. ++|+ ++++|||+|
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~---~~d~-~~l~~aDiV 78 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG---TNNY-EDIAGSDVV 78 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE---CCCH-HHhCCCCEE
Confidence 4479999997 9999999999999887 4699999988 5788999998742 234443 3564 789999999
Q ss_pred EEcCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec-
Q 018314 101 IIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT- 174 (358)
Q Consensus 101 Ii~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t- 174 (358)
|+++|.|+++|+ +|.+++..|+++++++++.|++++|++|+|++|||+|++++.+ ++.+| +|++||||+|
T Consensus 79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~---~~~sg-~p~~rviGlgt 154 (321)
T PTZ00082 79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL---QEHSG-LPKNKVCGMAG 154 (321)
T ss_pred EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHhcC-CChhhEEEecC
Confidence 999999999999 9999999999999999999999999999999999999999876 67887 9999999995
Q ss_pred cccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C---------CCHHHHHHHHHHHhcCcceEEee
Q 018314 175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEA 244 (358)
Q Consensus 175 ~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~ 244 (358)
.||+.|+++.+|+++++++++|+++|+||||+ ++||+||++++++ + +++++++++.++++++|++|++.
T Consensus 155 ~lds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~ 233 (321)
T PTZ00082 155 VLDSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDL 233 (321)
T ss_pred cccHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999998 8999999999864 1 45566899999999999999997
Q ss_pred ccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHH
Q 018314 245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322 (358)
Q Consensus 245 ~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~ 322 (358)
+ |||+|+||+|.++++++++|++|.+ .++|++ +++|+| .+|+|+|+||+||++|+++++++ +|+++|+++|++
T Consensus 234 ~-gkg~t~~~ia~a~~~i~~ail~d~~---~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~ 308 (321)
T PTZ00082 234 L-GTGSAYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDE 308 (321)
T ss_pred c-CCCccHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHH
Confidence 5 7899999999999999999999864 588887 578888 57899999999999999999998 999999999999
Q ss_pred HHHHHH
Q 018314 323 LNPTFH 328 (358)
Q Consensus 323 s~~~L~ 328 (358)
|++.|+
T Consensus 309 sa~~i~ 314 (321)
T PTZ00082 309 SIKEVK 314 (321)
T ss_pred HHHHHH
Confidence 999998
No 24
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=7e-58 Score=439.06 Aligned_cols=285 Identities=33% Similarity=0.551 Sum_probs=257.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC----CccEEEEecCCccccccCCCCEEEE
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVII 102 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiVIi 102 (358)
+||+|||+ |.||+++|+.++..++. +|+|+|+++ ..+++.|+.|... ..+++. ++|+ +++++||+||+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~---t~d~-~~~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG---TNNY-ADTANSDIVVI 75 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe---cCCH-HHhCCCCEEEE
Confidence 69999998 99999999999998876 899999987 5677888877542 234543 3554 56999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHH
Q 018314 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA 181 (358)
Q Consensus 103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~ 181 (358)
++|.|+++|++|.|++..|.+++++++++|.+++|++++|++|||+|++|+++ ++++| +|++||||+ |.|||+|+
T Consensus 76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~---~~~sg-~~~~rviG~g~~lds~R~ 151 (305)
T TIGR01763 76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA---WQKSG-FPKERVIGQAGVLDSARF 151 (305)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHHC-cCHHHEEEeccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 78898 999999999 58999999
Q ss_pred HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----CCHHHHHHHHHHHhcCcceEEeeccCCCCccchHH
Q 018314 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256 (358)
Q Consensus 182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A 256 (358)
++++|+++++++++|+++||||||+ +++|+||++++++ + +++++++++.++++++|++|++.+ |||+|+|++|
T Consensus 152 ~~~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a 229 (305)
T TIGR01763 152 RTFIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA 229 (305)
T ss_pred HHHHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence 9999999999999999999999998 8999999999865 3 344558999999999999999975 7899999999
Q ss_pred HHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314 257 YAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI 329 (358)
Q Consensus 257 ~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~ 329 (358)
.++++++++|++|.+ .++|++ +++|+| .+|+|+|+||++|++||++++++ +|+++|+++|++|++.|++
T Consensus 230 ~~~~~i~~ai~~~~~---~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~ 300 (305)
T TIGR01763 230 ASVVEMVEAILKDRK---RVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDE 300 (305)
T ss_pred HHHHHHHHHHhCCCC---eEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence 999999999999864 588887 568888 67999999999999999999998 9999999999999999984
No 25
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=4.1e-57 Score=436.36 Aligned_cols=293 Identities=26% Similarity=0.292 Sum_probs=253.8
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCC----cHHHHHHhhcCCCC--ccEEEEecCCccccccCCCC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSD 98 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al~~aD 98 (358)
||+||||+|+||+++++.|+.+++++ +|+|+|+++ ++++++||.|+... ..+. .+++.+++++|||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~---~~~~~~~~~~~aD 77 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVV---PTHDPAVAFTDVD 77 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCcee---ccCChHHHhCCCC
Confidence 69999988999999999999988875 799999954 57999999998732 2222 1234478999999
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccc
Q 018314 99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTL 176 (358)
Q Consensus 99 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~l 176 (358)
+||++||.|+++|++|.+++..|+++++++++.|.+++ |++++|++|||+|+||+++ ++.+| ++|+++||+ |.|
T Consensus 78 iVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~~~sg-~~~~~vig~gt~L 153 (324)
T TIGR01758 78 VAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL---SNYAP-SIPPKNFSALTRL 153 (324)
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH---HHHcC-CCCcceEEEeeeh
Confidence 99999999999999999999999999999999999996 9999999999999999987 78898 666679999 899
Q ss_pred cHHHHHHHHHHHcCCCCCCCc-eEEEeecCCcccccccccccCC-C----CC----CHHH--HHHHHHHHhcCcceEEee
Q 018314 177 DVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPK-A----NL----ADED--IKALTKRTQDGGTEVVEA 244 (358)
Q Consensus 177 ds~R~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~S~~~v~-~----~~----~~~~--~~~l~~~v~~~~~~i~~~ 244 (358)
|++||++++|+++++++++|+ ++||||||+ ++||+||+++++ + ++ ++++ ++++.+++++++++|++.
T Consensus 154 Ds~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~ 232 (324)
T TIGR01758 154 DHNRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRA 232 (324)
T ss_pred HHHHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhc
Confidence 999999999999999999996 699999999 899999999997 4 32 2222 578999999999999986
Q ss_pred ccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCC-C--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHH
Q 018314 245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQST-V--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL 320 (358)
Q Consensus 245 ~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~-~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L 320 (358)
+ +|++.|++|.++++++++|+++.. ++.++|++. .+|+ | ++|+|||+||++|++|++.+.++ +|+++|+++|
T Consensus 233 k--~~~t~~~ia~~~~~i~~ai~~~~~-~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l 308 (324)
T TIGR01758 233 R--KLSSALSAAKAAVDQMHDWVLGTP-EGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKL 308 (324)
T ss_pred c--CCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHH
Confidence 3 358999999999999999995432 235889874 6888 8 48999999999997777666667 9999999999
Q ss_pred HHHHHHHHHHhhhh
Q 018314 321 EKLNPTFHIRKLFQ 334 (358)
Q Consensus 321 ~~s~~~L~~~~~~~ 334 (358)
++|++.|+.++.++
T Consensus 309 ~~s~~~lk~~~~~~ 322 (324)
T TIGR01758 309 ALTAKELEEERDEA 322 (324)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888765
No 26
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8.3e-57 Score=432.52 Aligned_cols=285 Identities=29% Similarity=0.435 Sum_probs=257.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEcCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
|||+|||+ |.||+++++.|+..++..+|+|+|+++ ..++++|+.|... ......++ +| ++++++||+||+++|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~--~d-~~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA--GD-YADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee--CC-HHHhCCCCEEEEccC
Confidence 69999998 999999999999999888999999987 5789999998852 12233332 45 578999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHH
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF 184 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~ 184 (358)
.|++++++|.+++..|+++++++++.|++++|+++++++|||+|++++++ ++.+| +|++||||+ |.||+.|++++
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~---~~~sg-~p~~~viG~gt~LDs~R~~~~ 152 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA---YKLSG-LPPNRVIGSGTVLDTARFRYL 152 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHHC-cCHHHeecccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 78888 999999999 89999999999
Q ss_pred HHHHcCCCCCCCceEEEeecCCcccccccccccCCC------------CCCHHHHHHHHHHHhcCcceEEeeccCCCCcc
Q 018314 185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKAGKGSAT 252 (358)
Q Consensus 185 la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~ 252 (358)
+|+++++++++|+++|+|+||+ +++|+||++++++ .+++++++++.+++++++++|++ +||+|+
T Consensus 153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~---~kg~t~ 228 (308)
T cd05292 153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RKGATY 228 (308)
T ss_pred HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHH---cCCccH
Confidence 9999999999999999999998 8999999998864 13345688999999999999998 568999
Q ss_pred chHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314 253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI 329 (358)
Q Consensus 253 ~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~ 329 (358)
|++|.++++++++|+++.+ .++|++ +++|+| .+++|+|+||+||++|+++++++ +||++|+++|++|++.|++
T Consensus 229 ~~~a~a~~~i~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~ 303 (308)
T cd05292 229 YAIGLALARIVEAILRDEN---SVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKE 303 (308)
T ss_pred HHHHHHHHHHHHHHHcCCC---cEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999864 588887 568888 57899999999999999999998 9999999999999999983
No 27
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.5e-57 Score=436.65 Aligned_cols=296 Identities=28% Similarity=0.322 Sum_probs=259.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCC----cHHHHHHhhcCCC--CccEEEEecCCccccccC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALE 95 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~ 95 (358)
+|.||+||||+|+||+++++.|+.+++++ ||+|+|+++ +.++++|+.|+.. ..++.. +++++++++
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~ 77 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK 77 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence 46899999998999999999999988764 999999954 5788899999752 224432 356679999
Q ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-
Q 018314 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV- 173 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~- 173 (358)
|||+||++||.|++++++|.+++..|++|++++++.|++++ |++++|++|||+|+||+++ ++.++++|+++ ||+
T Consensus 78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~~~~~~~~~-ig~g 153 (325)
T cd01336 78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL---LKYAPSIPKEN-FTAL 153 (325)
T ss_pred CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH---HHHcCCCCHHH-EEee
Confidence 99999999999999999999999999999999999999997 7999999999999999987 77865588877 888
Q ss_pred ccccHHHHHHHHHHHcCCCCCCCce-EEEeecCCcccccccccccCC----C-CC----CHH--HHHHHHHHHhcCcceE
Q 018314 174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPK----A-NL----ADE--DIKALTKRTQDGGTEV 241 (358)
Q Consensus 174 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~S~~~v~----~-~~----~~~--~~~~l~~~v~~~~~~i 241 (358)
|.||++|+++++|+++++++++|+. +||||||+ ++||+||+++++ + ++ +++ .+++|.+++++++++|
T Consensus 154 t~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~I 232 (325)
T cd01336 154 TRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAV 232 (325)
T ss_pred ehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHH
Confidence 8999999999999999999999975 59999999 899999999986 4 32 222 2689999999999999
Q ss_pred EeeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHH
Q 018314 242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQE 318 (358)
Q Consensus 242 ~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~ 318 (358)
++. ++|+++|++|.++++++++|+++.+ ++.++|++. ++|+| ++|+|||+||++|++||++++++ +|+++|++
T Consensus 233 i~~--~~g~t~~~~a~~~~~i~~ail~~~~-~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~~ 308 (325)
T cd01336 233 IKA--RKLSSAMSAAKAICDHVHDWWFGTP-EGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSRE 308 (325)
T ss_pred HHc--cccchHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHH
Confidence 986 3579999999999999999999852 135888875 68888 58999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 018314 319 GLEKLNPTFHIRKLFQ 334 (358)
Q Consensus 319 ~L~~s~~~L~~~~~~~ 334 (358)
+|++|++.|++|+.++
T Consensus 309 ~l~~s~~~l~~e~~~~ 324 (325)
T cd01336 309 KIDATAKELVEEKETA 324 (325)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999888765
No 28
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=8.9e-55 Score=417.23 Aligned_cols=283 Identities=37% Similarity=0.615 Sum_probs=254.6
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC----CccEEEEecCCccccccCCCCEEEEcC
Q 018314 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
|+|||| |.||+++++.++..++. +|+|+|+++ +.++++|+.|... ..+++. ++| +++++|||+||+++
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~---t~d-~~~l~dADiVIit~ 74 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTG---TND-YEDIAGSDVVVITA 74 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEE---cCC-HHHhCCCCEEEEec
Confidence 689998 99999999999999877 999999987 5677888887641 224443 345 57899999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec-cccHHHHHH
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKT 183 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t-~lds~R~~~ 183 (358)
|.|+++|++|.+++.+|++++++++++|++++|++++|++|||+|++|+++ ++++| +||+||||+| .||++|+++
T Consensus 75 g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~---~~~s~-~~~~rviGlgt~lds~r~~~ 150 (300)
T cd01339 75 GIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA---YKASG-FPRNRVIGMAGVLDSARFRY 150 (300)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCHHHEEEecchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887 67887 9999999995 899999999
Q ss_pred HHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----CCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHH
Q 018314 184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYA 258 (358)
Q Consensus 184 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a 258 (358)
++|+++++++++|+++++|+||+ +++|+||++++++ + +++++++++.+++++++++|++.+ |||+++|++|.+
T Consensus 151 ~la~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~ 228 (300)
T cd01339 151 FIAEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAA 228 (300)
T ss_pred HHHHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHH
Confidence 99999999999999999999998 8999999999864 3 345568999999999999999976 779999999999
Q ss_pred HHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314 259 GAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI 329 (358)
Q Consensus 259 ~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~ 329 (358)
+++++++|+.+.+ .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus 229 ~~~i~~ail~~~~---~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~ 297 (300)
T cd01339 229 IAEMVEAILKDKK---RVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKE 297 (300)
T ss_pred HHHHHHHHHcCCC---cEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence 9999999999864 588887 568888 56999999999999999999998 9999999999999999984
No 29
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=1.6e-54 Score=416.57 Aligned_cols=287 Identities=28% Similarity=0.453 Sum_probs=254.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC----cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEEE
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII 102 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVIi 102 (358)
|||+|+||+|.+|++++..|+..++..+|+|+|+++ +++.++|+.|... +...+.. .++| ++++++||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d-~~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSD-LSDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCC-HHHhCCCCEEEE
Confidence 699999988999999999999999988999999954 5788899988632 2122222 1345 577999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHH
Q 018314 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA 181 (358)
Q Consensus 103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~ 181 (358)
++|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++|+++ ++.+| +|++|+||+ |.||++|+
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~---~~~~g-~~~~~viG~gt~LDs~R~ 154 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRF 154 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---HHhcC-CCHHHEeeccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876 78899 999999999 68999999
Q ss_pred HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C------CCHHHHHHHHHHHhcCcceEEeeccCCCCccch
Q 018314 182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------LADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254 (358)
Q Consensus 182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s 254 (358)
+++||+++++++++|+++|+||||+ +++|+||++++++ + +.+.+++++.++++++|++|++. ||+++||
T Consensus 155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~---kg~t~~~ 230 (309)
T cd05294 155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL---KGGSEYG 230 (309)
T ss_pred HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHh---cCCchhh
Confidence 9999999999999999999999998 8999999999864 2 22445789999999999999984 5789999
Q ss_pred HHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314 255 MAYAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI 329 (358)
Q Consensus 255 ~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~ 329 (358)
+|.++++++++|+++++ .++|++. ++|+| .+|+++|+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus 231 ~a~~~~~ii~ail~~~~---~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~ 304 (309)
T cd05294 231 PASAISNLVRTIANDER---RILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKK 304 (309)
T ss_pred HHHHHHHHHHHHHCCCC---eEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence 99999999999999875 5788764 67776 34899999999999999999998 9999999999999999983
No 30
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=1.7e-54 Score=416.34 Aligned_cols=286 Identities=36% Similarity=0.633 Sum_probs=256.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC----CccEEEEecCCccccccCCCCEEE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVI 101 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiVI 101 (358)
|+||+|||| |.||+++++.++..++. ||+|+|+++ .+++++|+.|... ..+++. ++|+ ++++|||+||
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~---~~d~-~~~~~aDiVi 75 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG---TNDY-EDIAGSDVVV 75 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEe---CCCH-HHHCCCCEEE
Confidence 579999998 99999999999998877 999999987 5788888887642 223442 3554 7899999999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHH
Q 018314 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR 180 (358)
Q Consensus 102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R 180 (358)
+++|.|+++|++|.+++.+|+++++++++.|++++|++++|++|||+|++|+++ ++++| +|++||||+ |.||++|
T Consensus 76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~---~~~s~-~~~~~viG~gt~lds~r 151 (307)
T PRK06223 76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA---LKESG-FPKNRVIGMAGVLDSAR 151 (307)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCcccEEEeCCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999987 67887 999999999 5899999
Q ss_pred HHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----CCHHHHHHHHHHHhcCcceEEeeccCCCCccchH
Q 018314 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255 (358)
Q Consensus 181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~ 255 (358)
++++||+++++++++|+++++|+||+ +++|+||++++++ + ++++.+++|.+.+++.+++|++.+ +|++++|++
T Consensus 152 ~~~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~ 229 (307)
T PRK06223 152 FRTFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAP 229 (307)
T ss_pred HHHHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHH
Confidence 99999999999999999999999998 8999999998853 3 455568899999999999999864 678999999
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314 256 AYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI 329 (358)
Q Consensus 256 A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~ 329 (358)
|.++++++++|+.+.+ .++|++ +++|+| .+|++||+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus 230 A~~~~~ii~ail~~~~---~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~ 301 (307)
T PRK06223 230 AASIAEMVEAILKDKK---RVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKK 301 (307)
T ss_pred HHHHHHHHHHHHcCCC---cEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence 9999999999998754 578886 568887 57999999999999999999998 9999999999999999983
No 31
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.2e-54 Score=428.78 Aligned_cols=294 Identities=19% Similarity=0.175 Sum_probs=256.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCC-----cEEEEEecC--C--cHHHHHHhhcCCCC--ccEEEEecCCcccccc
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIA--N--TPGVAADVGHINTR--SEVAGYMGNDQLGQAL 94 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~-----~ei~L~D~~--~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al 94 (358)
.+|.+|+|+||+|++|+++.+.++....+ -.|+|+|++ + ++|+++||.|+.++ ..+..++ +.++++
T Consensus 121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~---~~~ea~ 197 (452)
T cd05295 121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT---DLDVAF 197 (452)
T ss_pred CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE---CCHHHh
Confidence 35789999999999999999999996543 269999994 3 78999999998732 2355442 347999
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC--CeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG 172 (358)
+|||+||+++|.|+++||+|.|++..|.+|++++++.|.+++| ++++|++|||+|++|+++ ++.++++|++||||
T Consensus 198 ~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~---~k~apgiP~~rVig 274 (452)
T cd05295 198 KDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL---IKYAPSIPRKNIIA 274 (452)
T ss_pred CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH---HHHcCCCCHHHEEE
Confidence 9999999999999999999999999999999999999999999 899999999999999987 78894499999999
Q ss_pred eccccHHHHHHHHHHHcCCCCCCC-ceEEEeecCCcccccccccccCCC-------------C----CCHHH--HHHHHH
Q 018314 173 VTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-------------N----LADED--IKALTK 232 (358)
Q Consensus 173 ~t~lds~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~S~~~v~~-------------~----~~~~~--~~~l~~ 232 (358)
++.+|++|++++||+++|+++++| +++||||||+ ++||+||++++++ + +.+++ .+++..
T Consensus 275 ~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~ 353 (452)
T cd05295 275 VARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVA 353 (452)
T ss_pred ecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHH
Confidence 977889999999999999999999 6799999999 8999999999853 2 12323 356777
Q ss_pred HHhcCcceEEeeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEecC
Q 018314 233 RTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGL 309 (358)
Q Consensus 233 ~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l 309 (358)
.+++++. + +||+++||+|.|+++++++|+++.+. ..++|+++ ++|+| |+|++||+||++|++||+.+.++
T Consensus 354 ~v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~~-~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L 426 (452)
T cd05295 354 TLKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSPP-GEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDL 426 (452)
T ss_pred HHHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCCC-CeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCC
Confidence 8888877 2 57899999999999999999999752 25888874 68888 68999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhh
Q 018314 310 GPLSDFEQEGLEKLNPTFHIRKLFQ 334 (358)
Q Consensus 310 ~~L~~~E~~~L~~s~~~L~~~~~~~ 334 (358)
+|+++|+++|++|+++|.+|+..+
T Consensus 427 -~L~e~E~~kL~~S~~eL~~E~~~~ 450 (452)
T cd05295 427 -ELSEILREVLKRITSDLIQEKLVA 450 (452)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999888765
No 32
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=2.3e-54 Score=413.73 Aligned_cols=267 Identities=24% Similarity=0.286 Sum_probs=237.2
Q ss_pred EEEEEecCC----cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 018314 56 RLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLC 129 (358)
Q Consensus 56 ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~ 129 (358)
.++|+|+++ ++|+++||.|+.. ...++. ++|.+++++|||+||++||.|+++|++|.+++..|++|+++++
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~ 91 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA 91 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 899999976 6899999999873 223432 2454789999999999999999999999999999999999999
Q ss_pred HHHHhh-CCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHHHHHHcCCCCCCC-ceEEEeecCC
Q 018314 130 SAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAG 206 (358)
Q Consensus 130 ~~i~~~-~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~la~~l~v~~~~v-~~~v~G~hg~ 206 (358)
+.|.++ +|++++|++|||+|+||+++ ++.+| +|++|+||+ |.||++||++++|+++++++++| +++||||||+
T Consensus 92 ~~i~~~~~p~aivivvsNPvDv~t~~~---~~~sg-~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~ 167 (309)
T PLN00135 92 SALEKHAAPDCKVLVVANPANTNALIL---KEFAP-SIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS 167 (309)
T ss_pred HHHHHhcCCCeEEEEeCCcHHHHHHHH---HHHcC-CCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence 999996 89999999999999999987 78898 999999999 89999999999999999999999 7999999999
Q ss_pred cccccccccccC----CC-CC----CHHH--HHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHHHHHHccCCCCCc
Q 018314 207 ITILPLFSQATP----KA-NL----ADED--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPD 275 (358)
Q Consensus 207 ~~~vp~~S~~~v----~~-~~----~~~~--~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~ 275 (358)
++||+||++++ ++ ++ .+++ .+++.+++++++++|++. +||+|+||+|.++++++++|+++.+ ++.
T Consensus 168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~--~kg~t~~~ia~a~~~iv~ai~~~~~-~~~ 243 (309)
T PLN00135 168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKA--RKLSSALSAASSACDHIRDWVLGTP-EGT 243 (309)
T ss_pred -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHc--cCccHHHHHHHHHHHHHHHHHhCCc-CCe
Confidence 89999999999 53 32 3333 688999999999999985 3689999999999999999998532 235
Q ss_pred EEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHhhhh
Q 018314 276 VVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQ 334 (358)
Q Consensus 276 v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~~~~~ 334 (358)
++|++. ++|+| ++|+|||+||++|++|++.++++ +|+++|+++|++|++.|++++.++
T Consensus 244 v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~~~~~~ 304 (309)
T PLN00135 244 WVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKEEKELA 304 (309)
T ss_pred EEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888874 68888 48999999999999999999898 999999999999999999888776
No 33
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=3e-53 Score=406.94 Aligned_cols=267 Identities=21% Similarity=0.260 Sum_probs=232.8
Q ss_pred EEEEEecCC----cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 018314 56 RLALYDIAN----TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCS 130 (358)
Q Consensus 56 ei~L~D~~~----~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~ 130 (358)
.++|+|+++ ++|+++||.|+.+ ..+.... ++|++++++|||+||++||.|+++|++|.|++..|++|++++++
T Consensus 17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~ 94 (313)
T TIGR01756 17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE 94 (313)
T ss_pred EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 899999976 6899999999972 2222222 35666899999999999999999999999999999999999999
Q ss_pred HHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHHHHHHcCCCCCCCceE-EEeecCCc
Q 018314 131 AIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGI 207 (358)
Q Consensus 131 ~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~la~~l~v~~~~v~~~-v~G~hg~~ 207 (358)
.|.+++| ++++|++|||+|+||++++ ++.+| +|++ +||+ |.||++||++++|++++++|++|+.+ ||||||+
T Consensus 95 ~i~~~a~~~~ivivvtNPvDv~t~v~~--~~~sg-~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~- 169 (313)
T TIGR01756 95 ALSEYAKPTVKVLVIGNPVNTNCLVAM--LHAPK-LSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAE- 169 (313)
T ss_pred HHHhhCCCCeEEEEeCCchHHHHHHHH--HHcCC-CCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCC-
Confidence 9999995 5889999999999999862 36677 9998 9999 89999999999999999999999655 9999998
Q ss_pred ccccccccccC--CC-C------CCHH-HHHHHHHHHhcCcceEEeeccCCCCccchHH-HHHHHHHHHHHccCCCCCcE
Q 018314 208 TILPLFSQATP--KA-N------LADE-DIKALTKRTQDGGTEVVEAKAGKGSATLSMA-YAGAIFADACLKGLNGVPDV 276 (358)
Q Consensus 208 ~~vp~~S~~~v--~~-~------~~~~-~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A-~a~~~li~ail~~~~~~~~v 276 (358)
++||+||++++ ++ + ++++ .++++.+++++++++|++ +||+|+|+++ .++++++++|+++.+. +.+
T Consensus 170 s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~~a~ai~~iv~ail~~~~~-~~i 245 (313)
T TIGR01756 170 SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILE---MRGFTSAASPVKASLQHMKAWLFGTRP-GEV 245 (313)
T ss_pred ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHh---CcCCcchHHHHHHHHHHHHHHhcCCCC-CeE
Confidence 89999999999 54 2 2332 368999999999999998 5789999977 6999999999996543 368
Q ss_pred EEeee-ec-C-CC--CCccEEEEeEEEcCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHHhhhh
Q 018314 277 VECSF-VQ-S-TV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEGLEKLNPTFHIRKLFQ 334 (358)
Q Consensus 277 ~~~s~-~~-~-~~--~~d~~~s~Pv~vg~~Gv~~i~~-l~~L~~~E~~~L~~s~~~L~~~~~~~ 334 (358)
+|++. ++ + +| ++|+|+|+||++|++|++++++ + +|+++|+++|++|++.|++|+.++
T Consensus 246 ~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~~e~~~~ 308 (313)
T TIGR01756 246 LSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLFEERETA 308 (313)
T ss_pred EEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 55 3 78 4799999999999999999999 7 999999999999999999998776
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=4.2e-50 Score=378.03 Aligned_cols=252 Identities=34% Similarity=0.503 Sum_probs=227.4
Q ss_pred EEEEcCCCChHHHHHHHHHhCC--CCcEEEEEecCC--cHHHHHHhhcCCCCc-cEEEEecCCccccccCCCCEEEEcCC
Q 018314 31 VAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIAN--TPGVAADVGHINTRS-EVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~--~~~ei~L~D~~~--~~~~~~dl~~~~~~~-~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
|+||||+|.+|+++++.|++.+ ...||+|||+++ +++.++|++|..... ..+.. .++|++++++|||+||+++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence 6899988999999999999998 778999999987 688999999886432 23332 25677899999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHHHHHH
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~~~l 185 (358)
.++++|++|.+++.+|+++++++++.|+++||++|+|++|||+|++|+++ ++++| +|++|+||+|.+|+.|+++++
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~---~~~sg-~~~~kviG~~~ld~~r~~~~l 155 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV---WRYSG-LPKEKVIGLGTLDPIRFRRIL 155 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCchhEEEeecchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887 78888 999999999559999999999
Q ss_pred HHHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHHHH
Q 018314 186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADA 265 (358)
Q Consensus 186 a~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~a 265 (358)
|+++++++++|+++|||+||+ +++|+||+++ +|.++++++++
T Consensus 156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~-------------------------------------~a~~~~~ii~a 197 (263)
T cd00650 156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRS 197 (263)
T ss_pred HHHhCCCccceEEEEEEcCCC-ceEeccccch-------------------------------------HHHHHHHHHHH
Confidence 999999999999999999998 7999999763 77899999999
Q ss_pred HHccCCCCCcEEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314 266 CLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI 329 (358)
Q Consensus 266 il~~~~~~~~v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~ 329 (358)
|+++.+ .++|++. ++|+| ++|++||+||++|++|+++++++ +|+++|+++|+++++.++.
T Consensus 198 i~~~~~---~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~ 260 (263)
T cd00650 198 LLNDEG---EILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKK 260 (263)
T ss_pred HHcCCC---EEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence 999853 5778864 68887 58999999999999999999898 9999999999999999884
No 35
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.2e-42 Score=311.88 Aligned_cols=300 Identities=28% Similarity=0.347 Sum_probs=264.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCC-----CcEEEEEecCC----cHHHHHHhhcCCCCccEEEEecCCccccccCCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS 97 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~-----~~ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a 97 (358)
.+.+|.|.||+|++|+++.+.++.... ...++|.|+.. .+|..++|+|++++ .++....++|..++++|.
T Consensus 3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~P-lL~~Vvattd~~~afkdv 81 (332)
T KOG1496|consen 3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALP-LLKGVVATTDEVEAFKDV 81 (332)
T ss_pred CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhh-HHHhhhcccChhhhhccC
Confidence 577999999999999999999987421 23899999987 58999999999865 333333457778999999
Q ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccc
Q 018314 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176 (358)
Q Consensus 98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~l 176 (358)
|+.|+.++.||++||+|.|++..|..|+++-+..+++|+ |+.+++++.||++..+-++ .++++++|.+++-.+|.|
T Consensus 82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~---~k~ApsIP~kNfs~lTRL 158 (332)
T KOG1496|consen 82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALIL---KKFAPSIPEKNFSALTRL 158 (332)
T ss_pred cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHH---hhhCCCCchhcchhhhhh
Confidence 999999999999999999999999999999999999998 8999999999999988877 678888999999999999
Q ss_pred cHHHHHHHHHHHcCCCCCCC-ceEEEeecCCcccccccccccCCC-----C----CCHHHH--HHHHHHHhcCcceEEee
Q 018314 177 DVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-----N----LADEDI--KALTKRTQDGGTEVVEA 244 (358)
Q Consensus 177 ds~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~S~~~v~~-----~----~~~~~~--~~l~~~v~~~~~~i~~~ 244 (358)
|.+|...++|.++|++.++| ++.+||+|+. +++|+.-++++.. + ++|..| .++.+.|+++|..+++.
T Consensus 159 DhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a 237 (332)
T KOG1496|consen 159 DHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA 237 (332)
T ss_pred chhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence 99999999999999999999 6899999997 9999999999842 1 334443 58999999999999986
Q ss_pred ccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH
Q 018314 245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE 321 (358)
Q Consensus 245 ~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~ 321 (358)
+|-++.+|.|.++++.++.|+.+.+.. .+++++ +.+|.| |++..||+||++ ++|-|++++..+++++-++++.
T Consensus 238 --rk~SSA~SaA~aacDhi~dw~~gTpeG-~fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km~ 313 (332)
T KOG1496|consen 238 --RKLSSAMSAAKAACDHIRDWWFGTPEG-TFVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKMD 313 (332)
T ss_pred --hhhhhhhhHHHhHhhhhhheecCCCCc-cEEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhhh
Confidence 467899999999999999999998754 466776 568888 899999999999 7899999987799999999999
Q ss_pred HHHHHHHHHhhhhH
Q 018314 322 KLNPTFHIRKLFQI 335 (358)
Q Consensus 322 ~s~~~L~~~~~~~~ 335 (358)
.++++|++||..++
T Consensus 314 ~t~~EL~eEkd~a~ 327 (332)
T KOG1496|consen 314 LTAKELKEEKDLAY 327 (332)
T ss_pred hhHHHHHHhHHHHH
Confidence 99999999998775
No 36
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=100.00 E-value=6.1e-33 Score=237.80 Aligned_cols=137 Identities=44% Similarity=0.669 Sum_probs=124.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCc--cEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~--~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
|||+||||+|.||+++++.|+++++.+||+|+|+++ ++|+++||+|..... ...... +.+++++|||+||+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~~~~~~aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDYEALKDADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSGGGGTTESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---ccccccccccEEEEec
Confidence 699999988999999999999999999999999996 799999999986433 333332 3378999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG 172 (358)
|.|+++|++|.+++..|+++++++++.|.+++|+++++++|||+|++|+++ ++++| +||+|+||
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~---~~~s~-~~~~kviG 141 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVA---QKYSG-FPPNKVIG 141 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHH---HHHHT-SSGGGEEE
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHHH---HHhhC-cCcccCcC
Confidence 999999999999999999999999999999999999999999999999987 78888 99999998
No 37
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.97 E-value=1.4e-30 Score=259.68 Aligned_cols=280 Identities=18% Similarity=0.184 Sum_probs=194.4
Q ss_pred ceEEEEcCCCChHHH--HHHHHHhCC---CCcEEEEEecCC-cH----HHHHHhhcC-CCCccEEEEecCCccccccCCC
Q 018314 29 RKVAVLGAAGGIGQP--LALLMKLNP---LVSRLALYDIAN-TP----GVAADVGHI-NTRSEVAGYMGNDQLGQALEDS 97 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~--~a~~l~~~~---~~~ei~L~D~~~-~~----~~~~dl~~~-~~~~~v~~~~~~~d~~~al~~a 97 (358)
+||+|||| |+. ++ +...|+..+ ..+||+|||+++ .. ..+..+.+. ..+.+++. |+|+++|++||
T Consensus 1 ~KI~iIGg-GS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~---ttD~~~Al~gA 75 (425)
T cd05197 1 VKIAIIGG-GSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEK---TMDLEDAIIDA 75 (425)
T ss_pred CEEEEECC-chH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEE---eCCHHHHhCCC
Confidence 69999998 754 22 233455444 358999999987 22 223333322 22234443 57899999999
Q ss_pred CEEEEcC---C---------CCCCCC---CC-----HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHH
Q 018314 98 DVVIIPA---G---------VPRKPG---MT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE 157 (358)
Q Consensus 98 DiVIi~a---g---------~~~~~g---~~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~ 157 (358)
||||.+. | +|.++| ++ ......+|++++++|++.|+++|||||+|++|||+|++|+++
T Consensus 76 DfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~-- 153 (425)
T cd05197 76 DFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV-- 153 (425)
T ss_pred CEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH--
Confidence 9999974 3 244554 22 566788999999999999999999999999999999999987
Q ss_pred HHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe-ecCCcccccccccccCCC----------------
Q 018314 158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPKA---------------- 220 (358)
Q Consensus 158 ~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~hg~~~~vp~~S~~~v~~---------------- 220 (358)
++. +|+.||||+|.. +.|+++.+|+.+|+++++|+++++| +|+. .||..++++
T Consensus 154 -~~~---~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg~-----~~s~~~~~G~~l~p~l~~~~~~~~~ 223 (425)
T cd05197 154 -RRY---VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHGI-----WLNRVRYNGGDVTPKLDEWVEEKSK 223 (425)
T ss_pred -HHh---CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCeE-----eeEeEEECCeecHHHHHHHHhccCc
Confidence 554 467899999876 8999999999999999999999999 9973 233322110
Q ss_pred ----------------------------C------CC----H-------------HH---H-HHHHHHHhcC---cce-E
Q 018314 221 ----------------------------N------LA----D-------------ED---I-KALTKRTQDG---GTE-V 241 (358)
Q Consensus 221 ----------------------------~------~~----~-------------~~---~-~~l~~~v~~~---~~~-i 241 (358)
+ +. + ++ + +++.+..++. ... -
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~ 303 (425)
T cd05197 224 DWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVE 303 (425)
T ss_pred cccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhh
Confidence 0 00 0 01 0 1122222210 100 0
Q ss_pred EeeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHH
Q 018314 242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQ 317 (358)
Q Consensus 242 ~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~ 317 (358)
.. .++.+.++ ..++++++||.+|.+ .++.+++ ++|.+ |+|.++++||+|+++|++++.- ++|++...
T Consensus 304 ~~---~r~~~~~~--e~a~~ii~ai~~~~~---~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v-g~lp~~~~ 374 (425)
T cd05197 304 LI---KRGGRKYS--EAAIPLIRALLNDNG---ARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV-GPLDRFVK 374 (425)
T ss_pred hh---hcCCcccH--HHHHHHHHHHHcCCC---eEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc-CCCCHHHH
Confidence 11 11334444 788999999999875 3444443 45654 8899999999999999999854 48999888
Q ss_pred HHHH--HHHHHHHHHhhhh
Q 018314 318 EGLE--KLNPTFHIRKLFQ 334 (358)
Q Consensus 318 ~~L~--~s~~~L~~~~~~~ 334 (358)
.+++ ++++.|.+|+...
T Consensus 375 ~Li~~~~~~e~l~veAa~~ 393 (425)
T cd05197 375 GLLRQRKMRERLALEAFLT 393 (425)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8777 7888887776654
No 38
>PRK15076 alpha-galactosidase; Provisional
Probab=99.97 E-value=2.6e-30 Score=258.51 Aligned_cols=286 Identities=15% Similarity=0.131 Sum_probs=197.7
Q ss_pred CceEEEEcCCCChHHHHHH--HHH-hCCCC-cEEEEEecCC--cH-HHHHHhhcC----CCCccEEEEecCCccccccCC
Q 018314 28 DRKVAVLGAAGGIGQPLAL--LMK-LNPLV-SRLALYDIAN--TP-GVAADVGHI----NTRSEVAGYMGNDQLGQALED 96 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~--~l~-~~~~~-~ei~L~D~~~--~~-~~~~dl~~~----~~~~~v~~~~~~~d~~~al~~ 96 (358)
++||+|||| |++|++.++ .++ ..++. .||+|||+++ .+ +.+. +.+. ....+++. ++|++++++|
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~~---ttD~~eal~d 75 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKITA---TTDRREALQG 75 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEEE---ECCHHHHhCC
Confidence 469999998 999999877 665 34444 4999999987 22 3333 3332 12234543 4688899999
Q ss_pred CCEEEEcCCCC-CCCC--------------CCHHHH--------HHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchH
Q 018314 97 SDVVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153 (358)
Q Consensus 97 aDiVIi~ag~~-~~~g--------------~~r~~~--------~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~ 153 (358)
|||||++++.+ ++++ ++|.+. +.+|++++++++++|+++|||||+|++|||+|++|+
T Consensus 76 ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~ 155 (431)
T PRK15076 76 ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTW 155 (431)
T ss_pred CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHH
Confidence 99999999876 4434 556677 899999999999999999999999999999999998
Q ss_pred HHHHHHHHhCCCCCCceEeec--cccHHHHHHHHHHHcCCCCCCCceEEEeecCC----------ccccccccc---c--
Q 018314 154 IAAEVFKKAGTYNEKKLFGVT--TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG----------ITILPLFSQ---A-- 216 (358)
Q Consensus 154 ~~~~~~~~sg~~~~~kviG~t--~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~----------~~~vp~~S~---~-- 216 (358)
.+ + + +|+.||||+| .+|+ .+.+|+.+|+++++|++++.|-++. ++.+|..-. .
T Consensus 156 ~~---~---~-~~~~rviG~c~~~~~~---~~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~ 225 (431)
T PRK15076 156 AM---N---R-YPGIKTVGLCHSVQGT---AEQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQ 225 (431)
T ss_pred HH---h---c-CCCCCEEEECCCHHHH---HHHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccC
Confidence 75 3 4 7889999997 3665 4889999999999999999993332 133432110 0
Q ss_pred ----c-CC-----------C----------C-C----CHHHHHHHHH----HHh------cCcceEE-eeccCCCCcc--
Q 018314 217 ----T-PK-----------A----------N-L----ADEDIKALTK----RTQ------DGGTEVV-EAKAGKGSAT-- 252 (358)
Q Consensus 217 ----~-v~-----------~----------~-~----~~~~~~~l~~----~v~------~~~~~i~-~~~~gkg~t~-- 252 (358)
. +. . + + .++.++++.. ..+ ....+.. +.+. +.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 303 (431)
T PRK15076 226 TRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELAN--AERIEI 303 (431)
T ss_pred chhcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhC--CCcccc
Confidence 0 00 0 0 1 2222222211 000 0000000 1111 1111
Q ss_pred chHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH--HHHHH
Q 018314 253 LSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE--KLNPT 326 (358)
Q Consensus 253 ~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~--~s~~~ 326 (358)
-..+..++++++||.+|.+ .++.+++ ++|.+ |+|.++++||.|+++|++++.-. +|++..+++++ ++++.
T Consensus 304 ~~~~e~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~g-~lP~~~~~l~~~~~~~e~ 379 (431)
T PRK15076 304 KRSREYASTIIEAIETGEP---SVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKVG-DLPPQLAALNRTNINVQE 379 (431)
T ss_pred ccchHHHHHHHHHHhcCCc---eEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeecC-CCCHHHHHHHHHHHHHHH
Confidence 1134789999999998865 3444444 45654 88999999999999999998554 89999999988 88888
Q ss_pred HHHHhhhh
Q 018314 327 FHIRKLFQ 334 (358)
Q Consensus 327 L~~~~~~~ 334 (358)
|.+|+...
T Consensus 380 l~veAa~~ 387 (431)
T PRK15076 380 LTVEAALT 387 (431)
T ss_pred HHHHHHHh
Confidence 88877665
No 39
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=99.97 E-value=3.8e-31 Score=234.47 Aligned_cols=151 Identities=34% Similarity=0.498 Sum_probs=135.4
Q ss_pred ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-----------CCCHHHHHHHHHHHhcCcceEE
Q 018314 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVV 242 (358)
Q Consensus 174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-----------~~~~~~~~~l~~~v~~~~~~i~ 242 (358)
|.||++|+++++|+++|++|++++++|||+||+ ++||+||++++++ .+++++++++.+++++++++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 679999999999999999999999999999999 8999999999862 3667788999999999999999
Q ss_pred eeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCc-cEEEEeEEEcCCcEEEEecCCCCCHHHHH
Q 018314 243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TEL-PFFASKVRLGKNGVEEVLGLGPLSDFEQE 318 (358)
Q Consensus 243 ~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d-~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~ 318 (358)
+.|. |+++||+|.|+++++++|+++.+ .++|++ +.+|+| +++ +|||+||++|++|++++++.++|+++|++
T Consensus 80 ~~k~--g~t~~s~A~a~~~~v~ail~~~~---~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~ 154 (174)
T PF02866_consen 80 KAKG--GSTSYSIAAAAARIVEAILKDER---RILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQE 154 (174)
T ss_dssp HHHS--SSCHHHHHHHHHHHHHHHHTTHT---EEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHH
T ss_pred eecc--ccCcCCHHHHHHHHHHHHhhccc---ccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHH
Confidence 9652 89999999999999999999974 588886 468888 344 99999999999999999993399999999
Q ss_pred HHHHHHHHHHHH
Q 018314 319 GLEKLNPTFHIR 330 (358)
Q Consensus 319 ~L~~s~~~L~~~ 330 (358)
+|++|++.|+.+
T Consensus 155 ~l~~sa~~l~~~ 166 (174)
T PF02866_consen 155 KLKESAKELKKE 166 (174)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999943
No 40
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.97 E-value=1.2e-29 Score=252.52 Aligned_cols=288 Identities=17% Similarity=0.197 Sum_probs=194.8
Q ss_pred ceEEEEcCCCChHH-HHHHHHHhC-C--CCcEEEEEecC-C-cH----HHHHHhhcCC-CCccEEEEecCCccccccCCC
Q 018314 29 RKVAVLGAAGGIGQ-PLALLMKLN-P--LVSRLALYDIA-N-TP----GVAADVGHIN-TRSEVAGYMGNDQLGQALEDS 97 (358)
Q Consensus 29 ~KI~IiGA~G~vG~-~~a~~l~~~-~--~~~ei~L~D~~-~-~~----~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~a 97 (358)
+||+|||| |++.. .+...|+.. + ..+||+|||++ + .. ..+.++.+.. .+.++.. |+|+++|++||
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~---t~d~~~al~ga 76 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHL---TTDRREALEGA 76 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEE---eCCHHHHhCCC
Confidence 69999998 76522 223455553 2 35899999999 5 11 1122232222 2234443 57899999999
Q ss_pred CEEEEcCCCCCCCCCCH--------------------HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHH
Q 018314 98 DVVIIPAGVPRKPGMTR--------------------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE 157 (358)
Q Consensus 98 DiVIi~ag~~~~~g~~r--------------------~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~ 157 (358)
||||+++++...+++++ ...+.+|+++++++++.|+++|||||+|++|||+|++|+++
T Consensus 77 dfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~-- 154 (419)
T cd05296 77 DFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV-- 154 (419)
T ss_pred CEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH--
Confidence 99999987655444433 33478999999999999999999999999999999999876
Q ss_pred HHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe-ecCC---------cccccc---------------
Q 018314 158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAG---------ITILPL--------------- 212 (358)
Q Consensus 158 ~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~hg~---------~~~vp~--------------- 212 (358)
++.+ +.|+||+|.. +.|+++.+|+.+|+++++|+++++| +|.. ++.+|.
T Consensus 155 -~k~~----~~rviGlc~~-~~r~~~~ia~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~ 228 (419)
T cd05296 155 -LRHT----GDRVIGLCNV-PIGLQRRIAELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGL 228 (419)
T ss_pred -HHhc----cCCEEeeCCc-HHHHHHHHHHHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhcccccccc
Confidence 4543 6899999977 4899999999999999999999999 7754 234541
Q ss_pred -cccccC---C---CC------CCH--------------HHHH----HHHHHHhcCcc-eEEeeccCCCCccchHHHHHH
Q 018314 213 -FSQATP---K---AN------LAD--------------EDIK----ALTKRTQDGGT-EVVEAKAGKGSATLSMAYAGA 260 (358)
Q Consensus 213 -~S~~~v---~---~~------~~~--------------~~~~----~l~~~v~~~~~-~i~~~~~gkg~t~~s~A~a~~ 260 (358)
|+.... + .+ +.+ +.++ ++.+..++... +..+....++.+.|+ ..++
T Consensus 229 ~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~y~--e~a~ 306 (419)
T cd05296 229 LFGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGYS--EAAL 306 (419)
T ss_pred chHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcchH--HHHH
Confidence 111000 0 00 011 1112 22222222100 000000122334455 7889
Q ss_pred HHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH--HHHHHHHHHhhhh
Q 018314 261 IFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE--KLNPTFHIRKLFQ 334 (358)
Q Consensus 261 ~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~--~s~~~L~~~~~~~ 334 (358)
++++||.++.+ .++.+++ ++|.+ |+|.++++||.|+++|++++. .++|++...++++ ++++.|.+|+...
T Consensus 307 ~ii~ai~~~~~---~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~-vg~lP~~~~~l~~~~~~~e~l~veAa~~ 382 (419)
T cd05296 307 ALISAIYNDKG---DIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLP-VGPLPPAILGLIQQVKAYERLTIEAAVE 382 (419)
T ss_pred HHHHHHhcCCC---cEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceecc-CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998865 2443443 45654 889999999999999999984 4489999998887 7777777666554
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.96 E-value=3e-28 Score=243.45 Aligned_cols=285 Identities=16% Similarity=0.179 Sum_probs=193.5
Q ss_pred ceEEEEcCCCChHHH--HHHHHHhCC---CCcEEEEEecCC-c----HHHHHHhhcCCCCccEEEEecCCccccccCCCC
Q 018314 29 RKVAVLGAAGGIGQP--LALLMKLNP---LVSRLALYDIAN-T----PGVAADVGHINTRSEVAGYMGNDQLGQALEDSD 98 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~--~a~~l~~~~---~~~ei~L~D~~~-~----~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aD 98 (358)
|||+|||| |++ .+ +...|++.. ..+||+|+|+++ . ...+.++.+.. ...+++.. |+|+++|++|||
T Consensus 1 ~KI~iIGa-GS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~~-Ttdr~eAl~gAD 76 (437)
T cd05298 1 FKIVIAGG-GST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFVY-TTDPEEAFTDAD 76 (437)
T ss_pred CeEEEECC-cHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ECCHHHHhCCCC
Confidence 79999998 754 22 234555552 258999999998 2 22233333222 12344332 578999999999
Q ss_pred EEEEcC---C---------CCCCCCC---C-----HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHH
Q 018314 99 VVIIPA---G---------VPRKPGM---T-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158 (358)
Q Consensus 99 iVIi~a---g---------~~~~~g~---~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~ 158 (358)
|||.+. | +|.|+|. + ....+.||++++.+|++.|+++|||||+|++|||+|++|+++
T Consensus 77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~--- 153 (437)
T cd05298 77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL--- 153 (437)
T ss_pred EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---
Confidence 999974 2 2445542 2 456789999999999999999999999999999999999876
Q ss_pred HHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEeecCC-----------cccccccc----c--------
Q 018314 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG-----------ITILPLFS----Q-------- 215 (358)
Q Consensus 159 ~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~-----------~~~vp~~S----~-------- 215 (358)
++. +|+.||||+|+.. .-++..+|+.+|+++++++..+.|-++. ++.+|..- .
T Consensus 154 ~~~---~~~~kviGlC~~~-~~~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~ 229 (437)
T cd05298 154 RRL---FPNARILNICDMP-IAIMDSMAAILGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPPDS 229 (437)
T ss_pred HHH---CCCCCEEEECCcH-HHHHHHHHHHhCCCHHHceEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCcccc
Confidence 444 6789999999764 4578999999999999999998882221 13443211 0
Q ss_pred --c---c-------------------CCCC-----C-CH--------------HHHHHHHHHH----hcC----cceEEe
Q 018314 216 --A---T-------------------PKAN-----L-AD--------------EDIKALTKRT----QDG----GTEVVE 243 (358)
Q Consensus 216 --~---~-------------------v~~~-----~-~~--------------~~~~~l~~~v----~~~----~~~i~~ 243 (358)
. . +..+ + .+ +.+++..++. ++. ..+..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~ 309 (437)
T cd05298 230 DEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGST 309 (437)
T ss_pred cccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhh
Confidence 0 0 0000 0 11 1111122221 110 000001
Q ss_pred eccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHH
Q 018314 244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEG 319 (358)
Q Consensus 244 ~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~ 319 (358)
.+ + .. .|.+++++++||++|.+ .+++++. ++|.| ++|+++|+||+||++|++++.- ++|++...++
T Consensus 310 ~~---~-~~--ya~~a~~ii~aI~~d~~---~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~v-g~lP~~~~~l 379 (437)
T cd05298 310 FH---V-DV--HGEYIVDLAASIAYNTK---ERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVV-GKIPTFYKGL 379 (437)
T ss_pred hh---c-cc--hHHHHHHHHHHHHcCCC---eEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceeccc-CCCCHHHHHH
Confidence 11 1 11 45899999999999865 4777765 56666 6899999999999999999854 4899999998
Q ss_pred HH--HHHHHHHHHhhhh
Q 018314 320 LE--KLNPTFHIRKLFQ 334 (358)
Q Consensus 320 L~--~s~~~L~~~~~~~ 334 (358)
++ ++++.|.+|+...
T Consensus 380 ~~~~~~~e~l~veAa~~ 396 (437)
T cd05298 380 MEQQVAYEKLLVEAYLE 396 (437)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88 8888888776654
No 42
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.4e-26 Score=227.41 Aligned_cols=291 Identities=16% Similarity=0.146 Sum_probs=193.1
Q ss_pred CCceEEEEcCCCChHHHHH--HHHHhCC--CCcEEEEEecCC-cHH----HHHHhhc-CCCCccEEEEecCCccccccCC
Q 018314 27 PDRKVAVLGAAGGIGQPLA--LLMKLNP--LVSRLALYDIAN-TPG----VAADVGH-INTRSEVAGYMGNDQLGQALED 96 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a--~~l~~~~--~~~ei~L~D~~~-~~~----~~~dl~~-~~~~~~v~~~~~~~d~~~al~~ 96 (358)
++.||+|||| |+++.+-. ..|...+ ...||+|||+++ ... .+..+-+ ...+ ++... ++|+++||+|
T Consensus 2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~--~kv~~-ttd~~eAl~g 77 (442)
T COG1486 2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAP--VKVEA-TTDRREALEG 77 (442)
T ss_pred CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCC--eEEEE-ecCHHHHhcC
Confidence 4569999998 87765542 3455544 367999999987 222 2223322 2333 44433 5789999999
Q ss_pred CCEEEEcCC------------CCCCCCC---C-----HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH
Q 018314 97 SDVVIIPAG------------VPRKPGM---T-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA 156 (358)
Q Consensus 97 aDiVIi~ag------------~~~~~g~---~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~ 156 (358)
||||+.+.. +|.|+|- + ......|++|++-+|++.|+++||+||+|++|||+.++|+++
T Consensus 78 AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv- 156 (442)
T COG1486 78 ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAV- 156 (442)
T ss_pred CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHH-
Confidence 999999742 3666652 2 345668999999999999999999999999999999999876
Q ss_pred HHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCC-CCCceEEEeecCC----------cccccc-------------
Q 018314 157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV-AEVNVPVVGGHAG----------ITILPL------------- 212 (358)
Q Consensus 157 ~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~-~~v~~~v~G~hg~----------~~~vp~------------- 212 (358)
.++ +|..|++|+|+.. .-....+|+.|++++ ++++..+.|-++. .+.+|.
T Consensus 157 --~r~---~~~~K~VGlCh~~-~g~~~~lAe~L~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~ 230 (442)
T COG1486 157 --RRL---YPKIKIVGLCHGP-IGIAMELAEVLGLEPREDLRYRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPSE 230 (442)
T ss_pred --HHh---CCCCcEEeeCCch-HHHHHHHHHHhCCCchhceeEEEeechhhhhhhHhhhcCccchHHHHHHHhccccCCc
Confidence 454 4534999999763 567899999999975 9999999993322 122221
Q ss_pred ----------ccccc----CC---CC-----------------------CCHHHHH-----HHHHHHhcCcceEEeeccC
Q 018314 213 ----------FSQAT----PK---AN-----------------------LADEDIK-----ALTKRTQDGGTEVVEAKAG 247 (358)
Q Consensus 213 ----------~S~~~----v~---~~-----------------------~~~~~~~-----~l~~~v~~~~~~i~~~~~g 247 (358)
|...+ ++ .+ ...+++. ++.......-.+..+....
T Consensus 231 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~ 310 (442)
T COG1486 231 PENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEK 310 (442)
T ss_pred cccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhh
Confidence 11100 00 00 0111111 1111111000011110011
Q ss_pred CCCc--cchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH
Q 018314 248 KGSA--TLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE 321 (358)
Q Consensus 248 kg~t--~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~ 321 (358)
++.+ .++ .+++++++||++|.+ .++.+++ ++|.+ |+|.++++||+||++|++++... +|++.-.++++
T Consensus 311 ~~~~~~~~~--e~a~~ii~Ai~~~~~---~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~g-~lP~~~~~l~~ 384 (442)
T COG1486 311 RIGAGKYSS--EYASNIINAIENNKP---SRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAVG-DLPEFVKGLMH 384 (442)
T ss_pred cCCcccccH--HHHHHHHHHHhcCCc---eEEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccccC-CCCHHHHHHHH
Confidence 2223 444 788999999999976 3444444 56654 89999999999999999997665 99999999888
Q ss_pred --HHHHHHHHHhhhh
Q 018314 322 --KLNPTFHIRKLFQ 334 (358)
Q Consensus 322 --~s~~~L~~~~~~~ 334 (358)
++++.|.+|+.+.
T Consensus 385 ~~i~~e~l~veA~~t 399 (442)
T COG1486 385 TNINVEELTVEAALT 399 (442)
T ss_pred HHHHHHHHHHHHHHh
Confidence 7788887766543
No 43
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.95 E-value=8.1e-26 Score=226.26 Aligned_cols=286 Identities=16% Similarity=0.114 Sum_probs=197.3
Q ss_pred ceEEEEcCCCChHHHHHH--HHHhC-CC-CcEEEEEecCC--cHHHHHHhhcC----CCCccEEEEecCCccccccCCCC
Q 018314 29 RKVAVLGAAGGIGQPLAL--LMKLN-PL-VSRLALYDIAN--TPGVAADVGHI----NTRSEVAGYMGNDQLGQALEDSD 98 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~--~l~~~-~~-~~ei~L~D~~~--~~~~~~dl~~~----~~~~~v~~~~~~~d~~~al~~aD 98 (358)
+||+|||| |++|++.+. .++.. .. ..+|+|||+++ .+....++.+. ..+.+++. ++|++++++|||
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~---ttD~~eal~~AD 76 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEA---TTDRREALDGAD 76 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEE---eCCHHHHhcCCC
Confidence 58999998 999999877 45543 33 34999999987 34444444332 12234543 468889999999
Q ss_pred EEEEcCCCCCCCCCCH----------------------HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH
Q 018314 99 VVIIPAGVPRKPGMTR----------------------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA 156 (358)
Q Consensus 99 iVIi~ag~~~~~g~~r----------------------~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~ 156 (358)
+||++++....++.++ .....+|++++.++++.++++||++|++++|||++++|+++
T Consensus 77 ~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~- 155 (423)
T cd05297 77 FVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL- 155 (423)
T ss_pred EEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH-
Confidence 9999987544443333 56678999999999999999999999999999999999886
Q ss_pred HHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEeecCC----------ccccccccc-----------
Q 018314 157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG----------ITILPLFSQ----------- 215 (358)
Q Consensus 157 ~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~----------~~~vp~~S~----------- 215 (358)
++.++ .|+||+|.. +.++++.+|+.+++++++|+++++|-++. ++.+|..-.
T Consensus 156 --~k~~~----~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~ 228 (423)
T cd05297 156 --NRYTP----IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQ 228 (423)
T ss_pred --HHhCC----CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccchh
Confidence 56554 799999865 78999999999999999999999993332 234442111
Q ss_pred cc-CC-------C-----------C------CCHHHHHH------------------HHHHHhcCcceEEee--ccCCCC
Q 018314 216 AT-PK-------A-----------N------LADEDIKA------------------LTKRTQDGGTEVVEA--KAGKGS 250 (358)
Q Consensus 216 ~~-v~-------~-----------~------~~~~~~~~------------------l~~~v~~~~~~i~~~--~~gkg~ 250 (358)
.. +. + + ..++.... +........ ..+. ....+.
T Consensus 229 ~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 306 (423)
T cd05297 229 LSPVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLI--LAEIDKEELDPV 306 (423)
T ss_pred cccchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhc--cchhcchhcccc
Confidence 11 00 0 0 01011111 111111111 0000 000112
Q ss_pred ccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH--HHH
Q 018314 251 ATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE--KLN 324 (358)
Q Consensus 251 t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~--~s~ 324 (358)
..+ +..++++++||.++.+ .++.+++ ++|.+ |+|.++++||.|+++|++++.. ++|++....+++ +++
T Consensus 307 ~~~--~e~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~-g~lp~~~~~l~~~~~~~ 380 (423)
T cd05297 307 KRS--GEYASPIIEALVTGKP---RRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI-GPLPPQLAALIRPRINV 380 (423)
T ss_pred ccc--hHHHHHHHHHHhcCCc---eEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc-CCCCHHHHHHHHHHHHH
Confidence 223 3678999999998764 3444444 45654 8899999999999999999854 489999999888 888
Q ss_pred HHHHHHhhhh
Q 018314 325 PTFHIRKLFQ 334 (358)
Q Consensus 325 ~~L~~~~~~~ 334 (358)
+.|.+|+...
T Consensus 381 e~l~veA~~~ 390 (423)
T cd05297 381 QELAVEAALT 390 (423)
T ss_pred HHHHHHHHHh
Confidence 8888776654
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.84 E-value=2.1e-20 Score=165.76 Aligned_cols=151 Identities=21% Similarity=0.209 Sum_probs=108.4
Q ss_pred eEEEEcCCCChHHHHH--HHHHhCCC--CcEEEEEecCC-c----HHHHHHhhcC-CCCccEEEEecCCccccccCCCCE
Q 018314 30 KVAVLGAAGGIGQPLA--LLMKLNPL--VSRLALYDIAN-T----PGVAADVGHI-NTRSEVAGYMGNDQLGQALEDSDV 99 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a--~~l~~~~~--~~ei~L~D~~~-~----~~~~~dl~~~-~~~~~v~~~~~~~d~~~al~~aDi 99 (358)
||+|||| |++-.+.. ..+...+. .+||+|+|+++ . ...+..+... ..+.+++. ++|+++|++||||
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~---ttd~~eAl~gADf 76 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEA---TTDRREALEGADF 76 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEE---ESSHHHHHTTESE
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEE---eCCHHHHhCCCCE
Confidence 8999998 87766543 35555442 46999999997 1 2223333322 23345554 5789999999999
Q ss_pred EEEcCC------------CCCCCCCC----------HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHH
Q 018314 100 VIIPAG------------VPRKPGMT----------RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE 157 (358)
Q Consensus 100 VIi~ag------------~~~~~g~~----------r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~ 157 (358)
||.+.. .|.++|.. ......|++|++.+|++.|+++|||||+|++|||+.++|.++
T Consensus 77 Vi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~-- 154 (183)
T PF02056_consen 77 VINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL-- 154 (183)
T ss_dssp EEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH--
T ss_pred EEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH--
Confidence 999754 36676532 466789999999999999999999999999999999999876
Q ss_pred HHHHhCCCCCCceEeeccccHHHHHHHHHHHcCC
Q 018314 158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANV 191 (358)
Q Consensus 158 ~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v 191 (358)
.+. +|..|++|+|+.. .-+...+|+.||+
T Consensus 155 -~r~---~~~~k~vGlCh~~-~~~~~~la~~L~~ 183 (183)
T PF02056_consen 155 -SRY---TPKIKVVGLCHGP-QGTRRQLAKLLGM 183 (183)
T ss_dssp -HHH---STTSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred -HHh---CCCCCEEEECCCH-HHHHHHHHHHhCc
Confidence 454 4568999999763 5678999998874
No 45
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.87 E-value=9.8e-09 Score=91.53 Aligned_cols=117 Identities=22% Similarity=0.353 Sum_probs=78.5
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-----HHHHHH-hh---c-CC--------CCccEEEEecCCccc
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PGVAAD-VG---H-IN--------TRSEVAGYMGNDQLG 91 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-----~~~~~d-l~---~-~~--------~~~~v~~~~~~~d~~ 91 (358)
||+|||| |.+|..+|..++..|+ +|+|||.++. .....+ +. . .. ...+++.. +|++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~---~dl~ 74 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT---TDLE 74 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE---SSGG
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc---cCHH
Confidence 7999998 9999999999999998 9999999861 111111 11 1 11 12366653 5665
Q ss_pred cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc-chHHHHHHHHHhCCCCCCc
Q 018314 92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS-TVPIAAEVFKKAGTYNEKK 169 (358)
Q Consensus 92 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~-~t~~~~~~~~~sg~~~~~k 169 (358)
++. |||+||.+. .++.++.+++..++++++ |++ |+.||...+ ++.++ ... -.|+|
T Consensus 75 ~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~--ilasnTSsl~i~~la----~~~--~~p~R 131 (180)
T PF02737_consen 75 EAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDT--ILASNTSSLSISELA----AAL--SRPER 131 (180)
T ss_dssp GGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTS--EEEE--SSS-HHHHH----TTS--STGGG
T ss_pred HHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCc--eEEecCCCCCHHHHH----hcc--CcCce
Confidence 555 999999986 578999999999999999 577 458998875 44332 222 24678
Q ss_pred eEeecc
Q 018314 170 LFGVTT 175 (358)
Q Consensus 170 viG~t~ 175 (358)
++|+..
T Consensus 132 ~ig~Hf 137 (180)
T PF02737_consen 132 FIGMHF 137 (180)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 888853
No 46
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.79 E-value=2.6e-08 Score=95.45 Aligned_cols=118 Identities=23% Similarity=0.345 Sum_probs=86.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHH--H----HHhhcCC---------CCccEEEEecCCc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGV--A----ADVGHIN---------TRSEVAGYMGNDQ 89 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~--~----~dl~~~~---------~~~~v~~~~~~~d 89 (358)
.+||+|||| |.||+.+|+.++..++ +|+|+|+++ ..+. . ..+.... ...+++. ++|
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~---~~~ 76 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITP---TTD 76 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccc---cCc
Confidence 469999998 9999999999999667 999999985 1111 1 1111111 1224443 345
Q ss_pred cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc-chHHHHHHHHHhCCCCC
Q 018314 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS-TVPIAAEVFKKAGTYNE 167 (358)
Q Consensus 90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~-~t~~~~~~~~~sg~~~~ 167 (358)
+ .++++||+||.++ .+|.++.+++..++++++ |++ |+.||.+.+ ++.++. .. -.|
T Consensus 77 ~-~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia~----~~--~rp 133 (307)
T COG1250 77 L-AALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSLSITELAE----AL--KRP 133 (307)
T ss_pred h-hHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHHHH----Hh--CCc
Confidence 4 5899999999986 699999999999999999 677 559999985 555542 22 457
Q ss_pred CceEeec
Q 018314 168 KKLFGVT 174 (358)
Q Consensus 168 ~kviG~t 174 (358)
+|++|+.
T Consensus 134 er~iG~H 140 (307)
T COG1250 134 ERFIGLH 140 (307)
T ss_pred hhEEEEe
Confidence 8899984
No 47
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.73 E-value=9e-08 Score=92.77 Aligned_cols=121 Identities=13% Similarity=0.115 Sum_probs=85.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHH-----HH---HhhcC-----CCCccEEEEecCCccccc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGV-----AA---DVGHI-----NTRSEVAGYMGNDQLGQA 93 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~-----~~---dl~~~-----~~~~~v~~~~~~~d~~~a 93 (358)
..||+|||+ |.||+.+|..++..|+ +|+|||+++ .... .. .+... ....+++. +++++++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~a 80 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEAC 80 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHH
Confidence 468999998 9999999999999998 999999976 1111 00 11111 11234554 3567788
Q ss_pred cCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314 94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (358)
Q Consensus 94 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~ 173 (358)
+++||+|+.++ .+|.++.+++...+.+++|... |+.||.+.+...-+ .... -.|+|++|+
T Consensus 81 v~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~l---a~~~--~~p~R~~g~ 140 (321)
T PRK07066 81 VADADFIQESA--------------PEREALKLELHERISRAAKPDA-IIASSTSGLLPTDF---YARA--THPERCVVG 140 (321)
T ss_pred hcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHH---HHhc--CCcccEEEE
Confidence 99999999986 5889999999999999996433 66999987643322 2222 246788887
Q ss_pred c
Q 018314 174 T 174 (358)
Q Consensus 174 t 174 (358)
.
T Consensus 141 H 141 (321)
T PRK07066 141 H 141 (321)
T ss_pred e
Confidence 4
No 48
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.72 E-value=1.8e-07 Score=89.37 Aligned_cols=125 Identities=14% Similarity=0.213 Sum_probs=87.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HH-H--HH----HhhcCC---------CCccEEEEec
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PG-V--AA----DVGHIN---------TRSEVAGYMG 86 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~-~--~~----dl~~~~---------~~~~v~~~~~ 86 (358)
+....||+|||+ |.+|..+|..++..++ +|+|||+++. .. . .. .+.+.. ...+++.
T Consensus 2 ~~~~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~--- 75 (286)
T PRK07819 2 SDAIQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF--- 75 (286)
T ss_pred CCCccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---
Confidence 445569999998 9999999999999998 9999999861 11 1 00 011111 1134554
Q ss_pred CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-C-CeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314 87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-P-NAIVNMISNPVNSTVPIAAEVFKKAGT 164 (358)
Q Consensus 87 ~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p-~a~iiv~tNP~d~~t~~~~~~~~~sg~ 164 (358)
++|+ +++++||+||.+. .++.++.+++...+++++ + ++ |++||...+.....+ ...
T Consensus 76 ~~~~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la---~~~-- 133 (286)
T PRK07819 76 TTDL-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLA---AAT-- 133 (286)
T ss_pred eCCH-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHH---hhc--
Confidence 3565 6799999999996 588999999999999997 4 55 448888875443322 222
Q ss_pred CCCCceEeecccc
Q 018314 165 YNEKKLFGVTTLD 177 (358)
Q Consensus 165 ~~~~kviG~t~ld 177 (358)
-.++|++|+...+
T Consensus 134 ~~~~r~~g~hf~~ 146 (286)
T PRK07819 134 KRPGRVLGLHFFN 146 (286)
T ss_pred CCCccEEEEecCC
Confidence 3467888886543
No 49
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.68 E-value=6.6e-07 Score=87.55 Aligned_cols=116 Identities=20% Similarity=0.255 Sum_probs=84.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHH-------------Hh-hcCCCCccEEEEecCCcccccc
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-------------DV-GHINTRSEVAGYMGNDQLGQAL 94 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~-------------dl-~~~~~~~~v~~~~~~~d~~~al 94 (358)
|||+|+|. |.||...+..|++.|+ +|+++|+++.+-..+ +| .+.....+++. |+|+++++
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f---Ttd~~~a~ 74 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF---TTDYEEAV 74 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE---EcCHHHHH
Confidence 79999996 9999999999999998 999999986211111 11 11112235665 46788899
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--eCCCCcchHHHH
Q 018314 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAA 156 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~--tNP~d~~t~~~~ 156 (358)
+++|+++|+.|.|.++.. ..+...+...++.|.++.+...+|+. |-|++....+-.
T Consensus 75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~ 132 (414)
T COG1004 75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRA 132 (414)
T ss_pred hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHH
Confidence 999999999999887643 25577788888888888766444444 788877666543
No 50
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.57 E-value=3.6e-07 Score=97.54 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=88.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c--HHH--HHHh-----hcCC--------CCccEEEEec
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGV--AADV-----GHIN--------TRSEVAGYMG 86 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~--~~dl-----~~~~--------~~~~v~~~~~ 86 (358)
+.+..||+|||| |.||..+|..++..|+ +|+|+|+++ . .+. ..+. .... ...+++..
T Consensus 310 ~~~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-- 384 (714)
T TIGR02437 310 AKDVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-- 384 (714)
T ss_pred ccccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe--
Confidence 345678999998 9999999999999998 999999986 1 111 1111 1110 12356653
Q ss_pred CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCc-chHHHHHHHHHhCC
Q 018314 87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGT 164 (358)
Q Consensus 87 ~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~-~t~~~~~~~~~sg~ 164 (358)
+|+ ++++|||+||.++ .++.++.+++..++++++| ++ |+.||...+ ++.++ ...
T Consensus 385 -~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasnTS~l~i~~ia----~~~-- 440 (714)
T TIGR02437 385 -LSY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDA--ILASNTSTISISLLA----KAL-- 440 (714)
T ss_pred -CCH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHH----hhc--
Confidence 454 6799999999996 5889999999999999995 65 459999985 55443 222
Q ss_pred CCCCceEeec
Q 018314 165 YNEKKLFGVT 174 (358)
Q Consensus 165 ~~~~kviG~t 174 (358)
-.|+|++|+.
T Consensus 441 ~~p~r~ig~H 450 (714)
T TIGR02437 441 KRPENFCGMH 450 (714)
T ss_pred CCcccEEEEe
Confidence 3578999985
No 51
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.55 E-value=8e-08 Score=87.04 Aligned_cols=122 Identities=20% Similarity=0.315 Sum_probs=89.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c-----HHHHHHhhcCC-----------------CCccEEE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T-----PGVAADVGHIN-----------------TRSEVAG 83 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~-----~~~~~dl~~~~-----------------~~~~v~~ 83 (358)
+.+.|+|+|| |.+|+.+|...+..++ .|+|+|.++ + ++....+.+.. ...+++.
T Consensus 10 ~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~ 86 (298)
T KOG2304|consen 10 EIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT 86 (298)
T ss_pred cccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence 5568999998 9999999999999998 899999987 1 23333332211 0123343
Q ss_pred EecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCc-chHHHHHHHHHh
Q 018314 84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS-TVPIAAEVFKKA 162 (358)
Q Consensus 84 ~~~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~-~t~~~~~~~~~s 162 (358)
++|...++.|||+||.+. .+|+++.+++.+.+++.|+..- |..||...+ ++.++. .
T Consensus 87 ---~tnv~~~v~dadliiEAi--------------vEn~diK~~lF~~l~~~ak~~~-il~tNTSSl~lt~ia~-----~ 143 (298)
T KOG2304|consen 87 ---STNVSDAVSDADLIIEAI--------------VENLDIKRKLFKDLDKIAKSST-ILATNTSSLSLTDIAS-----A 143 (298)
T ss_pred ---cCCHHHhhhhhHHHHHHH--------------HHhHHHHHHHHHHHHhhcccce-EEeecccceeHHHHHh-----h
Confidence 356678899999988874 7999999999999999996543 458999885 665542 1
Q ss_pred CCCCCCceEeecc
Q 018314 163 GTYNEKKLFGVTT 175 (358)
Q Consensus 163 g~~~~~kviG~t~ 175 (358)
.-+|.++.|+..
T Consensus 144 -~~~~srf~GlHF 155 (298)
T KOG2304|consen 144 -TQRPSRFAGLHF 155 (298)
T ss_pred -ccChhhhceeec
Confidence 146789999963
No 52
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.54 E-value=5.9e-07 Score=95.96 Aligned_cols=120 Identities=22% Similarity=0.323 Sum_probs=86.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHH-hCCCCcEEEEEecCC-c--HH--HHHHh----h-cCC--------CCccEEEEec
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIAN-T--PG--VAADV----G-HIN--------TRSEVAGYMG 86 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~-~~~~~~ei~L~D~~~-~--~~--~~~dl----~-~~~--------~~~~v~~~~~ 86 (358)
.+..||+|||| |.+|..+|..++ ..++ +|+|+|+++ . .+ ...+. . ... ...+++..
T Consensus 307 ~~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-- 381 (708)
T PRK11154 307 RPVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-- 381 (708)
T ss_pred CcccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe--
Confidence 45579999998 999999999998 7788 999999976 1 11 11111 1 110 12356653
Q ss_pred CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc-chHHHHHHHHHhCC
Q 018314 87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS-TVPIAAEVFKKAGT 164 (358)
Q Consensus 87 ~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~-~t~~~~~~~~~sg~ 164 (358)
+|+ ++++|||+||.+. .+|.++.+++..++++++ |++ |+.||...+ ++.++ ...
T Consensus 382 -~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la----~~~-- 437 (708)
T PRK11154 382 -TDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIA----AAA-- 437 (708)
T ss_pred -CCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHH----Hhc--
Confidence 455 6899999999996 689999999999999999 566 458999985 55443 222
Q ss_pred CCCCceEeec
Q 018314 165 YNEKKLFGVT 174 (358)
Q Consensus 165 ~~~~kviG~t 174 (358)
-.|+|++|+.
T Consensus 438 ~~p~r~ig~H 447 (708)
T PRK11154 438 ARPEQVIGLH 447 (708)
T ss_pred CcccceEEEe
Confidence 2467899985
No 53
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.53 E-value=6.6e-07 Score=85.42 Aligned_cols=121 Identities=21% Similarity=0.352 Sum_probs=79.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHH----hh-----cCCC---------CccEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAAD----VG-----HINT---------RSEVAGYMGND 88 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~d----l~-----~~~~---------~~~v~~~~~~~ 88 (358)
.+||+|||+ |.+|..+|..++..++ +|++||+++. ...+.+ +. .... ..+++. ++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~ 76 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT 76 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence 359999998 9999999999999887 8999999761 111110 10 0000 124554 35
Q ss_pred ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCC
Q 018314 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK 168 (358)
Q Consensus 89 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~ 168 (358)
|+.+++++||+||++. ..+.++.+++...+.+++++.. |+++|.......-+ .+... .+.
T Consensus 77 d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~-ii~sntSt~~~~~~---~~~~~--~~~ 136 (287)
T PRK08293 77 DLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKT-IFATNSSTLLPSQF---AEATG--RPE 136 (287)
T ss_pred CHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCC-EEEECcccCCHHHH---HhhcC--Ccc
Confidence 6667899999999986 3557788888888988885433 33677776533211 22222 356
Q ss_pred ceEeec
Q 018314 169 KLFGVT 174 (358)
Q Consensus 169 kviG~t 174 (358)
|++|+.
T Consensus 137 r~vg~H 142 (287)
T PRK08293 137 KFLALH 142 (287)
T ss_pred cEEEEc
Confidence 788874
No 54
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.51 E-value=1.1e-06 Score=94.26 Aligned_cols=120 Identities=20% Similarity=0.243 Sum_probs=87.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c--HHH--HHH-h----hcCC--------CCccEEEEecC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGV--AAD-V----GHIN--------TRSEVAGYMGN 87 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~--~~d-l----~~~~--------~~~~v~~~~~~ 87 (358)
.+..||+|||| |.||..+|..++..|+ +|+|+|+++ . .+. ..+ + .... ...+++..
T Consensus 333 ~~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~--- 406 (737)
T TIGR02441 333 RPVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT--- 406 (737)
T ss_pred CcccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe---
Confidence 35568999998 9999999999999998 999999986 1 111 111 1 1110 12356653
Q ss_pred CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCc-chHHHHHHHHHhCCC
Q 018314 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGTY 165 (358)
Q Consensus 88 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~-~t~~~~~~~~~sg~~ 165 (358)
+|+ +++++||+||.++ .+|.++.+++..+++++++ ++ |+.||...+ ++.++ ... -
T Consensus 407 ~~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la----~~~--~ 463 (737)
T TIGR02441 407 LDY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHC--IIASNTSALPIKDIA----AVS--S 463 (737)
T ss_pred CCH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHH----hhc--C
Confidence 454 6899999999986 6899999999999999995 55 458999985 55443 232 3
Q ss_pred CCCceEeec
Q 018314 166 NEKKLFGVT 174 (358)
Q Consensus 166 ~~~kviG~t 174 (358)
.|+|++|+.
T Consensus 464 ~p~r~ig~H 472 (737)
T TIGR02441 464 RPEKVIGMH 472 (737)
T ss_pred CccceEEEe
Confidence 478899984
No 55
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.50 E-value=9.8e-07 Score=94.37 Aligned_cols=119 Identities=21% Similarity=0.235 Sum_probs=86.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c--HHH--HH----Hhh-cCC--------CCccEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGV--AA----DVG-HIN--------TRSEVAGYMGND 88 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~--~~----dl~-~~~--------~~~~v~~~~~~~ 88 (358)
+..||+|||| |.||..+|..++..|+ +|+|||+++ . .+. .. .+. ... ...+++.. +
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~---~ 385 (715)
T PRK11730 312 PVKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT---L 385 (715)
T ss_pred ccceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe---C
Confidence 4568999998 9999999999999998 999999986 1 111 11 111 110 12356653 4
Q ss_pred ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCc-chHHHHHHHHHhCCCC
Q 018314 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGTYN 166 (358)
Q Consensus 89 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~-~t~~~~~~~~~sg~~~ 166 (358)
|+ +++++||+||.+. .++.++.+++..++++++| ++ |+.||...+ ++.++ ... -.
T Consensus 386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la----~~~--~~ 442 (715)
T PRK11730 386 DY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNTSTISISLLA----KAL--KR 442 (715)
T ss_pred CH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHH----hhc--CC
Confidence 55 6799999999996 5889999999999999995 55 559999986 55544 222 24
Q ss_pred CCceEeec
Q 018314 167 EKKLFGVT 174 (358)
Q Consensus 167 ~~kviG~t 174 (358)
|+|++|+.
T Consensus 443 p~r~~g~H 450 (715)
T PRK11730 443 PENFCGMH 450 (715)
T ss_pred CccEEEEe
Confidence 67899984
No 56
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.46 E-value=1.1e-06 Score=93.69 Aligned_cols=120 Identities=19% Similarity=0.275 Sum_probs=86.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHh-CCCCcEEEEEecCC-c--HHH--HH-Hhh----cCC--------CCccEEEEec
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN-T--PGV--AA-DVG----HIN--------TRSEVAGYMG 86 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~-~~~~~ei~L~D~~~-~--~~~--~~-dl~----~~~--------~~~~v~~~~~ 86 (358)
.+..||+|||| |.||+.+|..++. .++ +|+|+|+++ . .+. .. .+. ... ...+++..
T Consensus 302 ~~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-- 376 (699)
T TIGR02440 302 AKIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-- 376 (699)
T ss_pred ccccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe--
Confidence 45569999998 9999999999884 788 999999986 1 111 11 111 100 12356653
Q ss_pred CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCc-chHHHHHHHHHhCC
Q 018314 87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGT 164 (358)
Q Consensus 87 ~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~-~t~~~~~~~~~sg~ 164 (358)
+|+ ++++|||+||.++ .++.++.+++..+++++++ ++ |+.||...+ ++.++ ...
T Consensus 377 -~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~~la----~~~-- 432 (699)
T TIGR02440 377 -TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT--IFASNTSSLPIGQIA----AAA-- 432 (699)
T ss_pred -CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHHH----Hhc--
Confidence 555 6899999999986 5889999999999999995 55 458999985 55543 222
Q ss_pred CCCCceEeec
Q 018314 165 YNEKKLFGVT 174 (358)
Q Consensus 165 ~~~~kviG~t 174 (358)
-.|+|++|+.
T Consensus 433 ~~p~r~~g~H 442 (699)
T TIGR02440 433 SRPENVIGLH 442 (699)
T ss_pred CCcccEEEEe
Confidence 3477899974
No 57
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.40 E-value=5.4e-07 Score=78.43 Aligned_cols=92 Identities=26% Similarity=0.386 Sum_probs=62.8
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC--------CCccEEEEecCCccccccCCCCEEE
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--------TRSEVAGYMGNDQLGQALEDSDVVI 101 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--------~~~~v~~~~~~~d~~~al~~aDiVI 101 (358)
||+|+|| |..|.++|..|+.++. +|.||++++.....+.-.+.. .+..+.. ++|+++++++||+||
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII 74 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence 8999998 9999999999999996 999999876222222112221 1234554 368889999999999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEE
Q 018314 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNM 143 (358)
Q Consensus 102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv 143 (358)
++. .....+++++.|..+-+ +..+++
T Consensus 75 iav----------------Ps~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 75 IAV----------------PSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp E-S-----------------GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred ecc----------------cHHHHHHHHHHHhhccCCCCEEEE
Confidence 974 13456788888888874 444443
No 58
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.39 E-value=4.5e-06 Score=79.41 Aligned_cols=119 Identities=21% Similarity=0.351 Sum_probs=80.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHH------HHHhhcCC---------CCccEEEEecCCc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV------AADVGHIN---------TRSEVAGYMGNDQ 89 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~------~~dl~~~~---------~~~~v~~~~~~~d 89 (358)
++||+|||+ |.||..++..++..++ +|+++|+++. .+. ..++.+.. ...+++.. +|
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~---~~ 76 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT---TD 76 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe---CC
Confidence 358999998 9999999999999987 8999998762 111 01111111 01245542 45
Q ss_pred cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHhCCCCCC
Q 018314 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK 168 (358)
Q Consensus 90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~ 168 (358)
+ +++++||+||+++ ..+..+.+++...+.++++ +++ + .||..++....+ ....+ .+.
T Consensus 77 ~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~i-l-~s~ts~~~~~~l---a~~~~--~~~ 134 (282)
T PRK05808 77 L-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAI-L-ATNTSSLSITEL---AAATK--RPD 134 (282)
T ss_pred H-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcE-E-EECCCCCCHHHH---HHhhC--CCc
Confidence 4 5689999999996 4667788888999999885 553 3 788887644333 22332 346
Q ss_pred ceEeec
Q 018314 169 KLFGVT 174 (358)
Q Consensus 169 kviG~t 174 (358)
|++|+.
T Consensus 135 r~ig~h 140 (282)
T PRK05808 135 KVIGMH 140 (282)
T ss_pred ceEEee
Confidence 788885
No 59
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.36 E-value=1.4e-06 Score=77.97 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=71.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC----------------CCccEEEEecCCcccc
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----------------TRSEVAGYMGNDQLGQ 92 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~----------------~~~~v~~~~~~~d~~~ 92 (358)
|||+|||. |.||..+|..|+..|+ +++-||+++. ....++... ...+++.. +|..+
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~--~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t---~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEE--KVEALNNGELPIYEPGLDELLKENVSAGRLRAT---TDIEE 72 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HH--HHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE---SEHHH
T ss_pred CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChH--HHHHHhhccccccccchhhhhccccccccchhh---hhhhh
Confidence 79999997 9999999999999998 9999999862 111222211 12466653 56677
Q ss_pred ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--eCCCCcchHHHHHHHHHhC
Q 018314 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG 163 (358)
Q Consensus 93 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~--tNP~d~~t~~~~~~~~~sg 163 (358)
++++||++|++.+.|...+.+ -+...+.+.++.|.++..+..++++ |=|.+....++..+++..+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp HHHH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred hhhccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 899999999999888765431 2344455555555555433333434 7777777655544555544
No 60
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.35 E-value=4.4e-06 Score=79.87 Aligned_cols=120 Identities=13% Similarity=0.267 Sum_probs=77.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHH--------hh---cCCC---------CccEEEEecC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAAD--------VG---HINT---------RSEVAGYMGN 87 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~d--------l~---~~~~---------~~~v~~~~~~ 87 (358)
.||+|||+ |.+|..++..++..++ +|++||+++. ...+.+ +. +... ..++.. +
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~ 77 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S 77 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence 58999998 9999999999999987 8999999862 111110 11 1010 113343 2
Q ss_pred CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHhCCCC
Q 018314 88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYN 166 (358)
Q Consensus 88 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~sg~~~ 166 (358)
+|+ +++++||+||++. ..+.++.+++...++++++ ++++ +||...+...-+ .... -.
T Consensus 78 ~~~-~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~~l---a~~~--~~ 135 (291)
T PRK06035 78 TSY-ESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPETII--ASNTSGIMIAEI---ATAL--ER 135 (291)
T ss_pred CCH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHHHH---Hhhc--CC
Confidence 444 6789999999986 3456777888888888875 5533 677776543222 1222 23
Q ss_pred CCceEeeccc
Q 018314 167 EKKLFGVTTL 176 (358)
Q Consensus 167 ~~kviG~t~l 176 (358)
+.|++|+...
T Consensus 136 ~~r~ig~hf~ 145 (291)
T PRK06035 136 KDRFIGMHWF 145 (291)
T ss_pred cccEEEEecC
Confidence 6788888543
No 61
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.31 E-value=1.3e-05 Score=73.61 Aligned_cols=100 Identities=23% Similarity=0.220 Sum_probs=62.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcC----CCCccEEEEecCCccccccCCCCEEEE
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHI----NTRSEVAGYMGNDQLGQALEDSDVVII 102 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~----~~~~~v~~~~~~~d~~~al~~aDiVIi 102 (358)
|||+|||++|.+|++++..|+..+. +|.++|.++. .....+..+. .....+.. .+..++++++|+||+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~----~~~~ea~~~aDvVil 74 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG----ADNAEAAKRADVVIL 74 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE----eChHHHHhcCCEEEE
Confidence 6899998449999999999998886 8999998752 2222222211 11112222 123578899999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCc
Q 018314 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS 150 (358)
Q Consensus 103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~ 150 (358)
+.- ...+.++.+.+...-++.++|-++||.+.
T Consensus 75 avp----------------~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 75 AVP----------------WDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred ECC----------------HHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 862 11123333344333334578889999864
No 62
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.31 E-value=5.8e-06 Score=85.10 Aligned_cols=124 Identities=18% Similarity=0.228 Sum_probs=83.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HH--HHHH----hh-cCC--------CCccEEEEec
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--VAAD----VG-HIN--------TRSEVAGYMG 86 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~--~~~d----l~-~~~--------~~~~v~~~~~ 86 (358)
+.+..||+|||+ |.||..+|..++..++ +|++||+++. .+ ...+ +. +.. ...+++..
T Consensus 4 ~~~i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-- 78 (507)
T PRK08268 4 LPSIATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-- 78 (507)
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe--
Confidence 345568999998 9999999999999998 9999999861 11 0111 11 110 01245553
Q ss_pred CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcc-hHHHHHHHHHhCC
Q 018314 87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNST-VPIAAEVFKKAGT 164 (358)
Q Consensus 87 ~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~-t~~~~~~~~~sg~ 164 (358)
+|+ +++++||+||.+. .++.++.+.+...+++.++ ++ |++||...+- +.+. ...
T Consensus 79 -~~~-~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~a--ilasntStl~i~~la----~~~-- 134 (507)
T PRK08268 79 -EAL-ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDC--ILATNTSSLSITAIA----AAL-- 134 (507)
T ss_pred -CCH-HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHH----hhc--
Confidence 444 5688999999985 4778888888888999984 55 4467877643 3332 222
Q ss_pred CCCCceEeecccc
Q 018314 165 YNEKKLFGVTTLD 177 (358)
Q Consensus 165 ~~~~kviG~t~ld 177 (358)
-.|+|++|+..++
T Consensus 135 ~~p~r~~G~hff~ 147 (507)
T PRK08268 135 KHPERVAGLHFFN 147 (507)
T ss_pred CCcccEEEEeecC
Confidence 3467888885444
No 63
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.31 E-value=5.5e-06 Score=85.14 Aligned_cols=123 Identities=24% Similarity=0.333 Sum_probs=84.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHH---H---HHhhcCC---------CCccEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV---A---ADVGHIN---------TRSEVAGYMGND 88 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~---~---~dl~~~~---------~~~~v~~~~~~~ 88 (358)
+..||+|||+ |.||+.+|..++..++ +|++||+++. .+. . ..+.... ...+++.. +
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~---~ 77 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV---T 77 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe---C
Confidence 3458999998 9999999999999998 9999999861 110 0 0111111 11245543 4
Q ss_pred ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcch-HHHHHHHHHhCCCCC
Q 018314 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV-PIAAEVFKKAGTYNE 167 (358)
Q Consensus 89 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t-~~~~~~~~~sg~~~~ 167 (358)
|+ +++++||+||.+. .++.++.+++...++++++... |+.||...+-. .++ ... -.|
T Consensus 78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~-IlasnTStl~i~~iA----~~~--~~p 135 (503)
T TIGR02279 78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADT-IIASNTSSLSITAIA----AGL--ARP 135 (503)
T ss_pred CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe-EEEECCCCCCHHHHH----Hhc--Ccc
Confidence 55 5789999999986 4778888888889999996543 45899988643 333 222 235
Q ss_pred CceEeecccc
Q 018314 168 KKLFGVTTLD 177 (358)
Q Consensus 168 ~kviG~t~ld 177 (358)
.|++|+...+
T Consensus 136 ~r~~G~HFf~ 145 (503)
T TIGR02279 136 ERVAGLHFFN 145 (503)
T ss_pred cceEEEeccC
Confidence 6788875444
No 64
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.26 E-value=1.4e-05 Score=81.53 Aligned_cols=122 Identities=15% Similarity=0.180 Sum_probs=78.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC---------------CCccEEEEecCCcccc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN---------------TRSEVAGYMGNDQLGQ 92 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~---------------~~~~v~~~~~~~d~~~ 92 (358)
+|||+|||+ |.||..+|..|+..+..-+|+.||+++.+ +..+.... ...+++. ++|+.+
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~--v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~ 74 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPR--IDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEK 74 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHH--HHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHH
Confidence 589999997 99999999999998654489999998622 11221110 0112443 356667
Q ss_pred ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--eCCCCcchHHHH
Q 018314 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAA 156 (358)
Q Consensus 93 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~--tNP~d~~t~~~~ 156 (358)
++++||++|++.+.|...+-...+ -.-+...+.+.++.|.++.+++.+|+. |-|.+..-.+..
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~ 139 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEK 139 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHH
Confidence 899999999999988754210000 013455566777777777655444443 778876655543
No 65
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.25 E-value=1.6e-05 Score=76.06 Aligned_cols=122 Identities=20% Similarity=0.338 Sum_probs=76.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHH----Hhh----cCCC--------CccEEEEecCCc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAA----DVG----HINT--------RSEVAGYMGNDQ 89 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~----dl~----~~~~--------~~~v~~~~~~~d 89 (358)
.+||+|||+ |.+|..++..++..++ +|++||+++. ..... .+. .... ..+++. ++|
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~ 77 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD 77 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence 358999998 9999999999999987 9999999761 11111 111 1111 123443 245
Q ss_pred cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCC
Q 018314 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK 168 (358)
Q Consensus 90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~ 168 (358)
+ +++++||+||++. ..+..+.+.+...+.+++ |++++ +||...+-...+ .+.. -.+.
T Consensus 78 ~-~~~~~aD~Vieav--------------pe~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~s~l---a~~~--~~~~ 135 (292)
T PRK07530 78 L-EDLADCDLVIEAA--------------TEDETVKRKIFAQLCPVLKPEAIL--ATNTSSISITRL---ASAT--DRPE 135 (292)
T ss_pred H-HHhcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHH---Hhhc--CCcc
Confidence 4 5789999999985 234455666667788877 45533 577776532222 2222 2356
Q ss_pred ceEeecccc
Q 018314 169 KLFGVTTLD 177 (358)
Q Consensus 169 kviG~t~ld 177 (358)
+++|+..++
T Consensus 136 r~~g~h~~~ 144 (292)
T PRK07530 136 RFIGIHFMN 144 (292)
T ss_pred cEEEeeccC
Confidence 888876544
No 66
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.21 E-value=1.2e-05 Score=77.39 Aligned_cols=121 Identities=16% Similarity=0.277 Sum_probs=73.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhh---cC--------CCCccEEEEecCCcccccc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVG---HI--------NTRSEVAGYMGNDQLGQAL 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~---~~--------~~~~~v~~~~~~~d~~~al 94 (358)
.+||+|||+ |.+|..++..|+..++ +|+++|.++. ......+. .. ....+++. ++|+.+++
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAV 77 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHh
Confidence 468999998 9999999999998887 8999998761 11111110 00 00112343 24555678
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT 174 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t 174 (358)
++||+||++. ........++...+..+.+... +++||...+...-+ ....+ .+.+++|+.
T Consensus 78 ~~aDlVi~av--------------~~~~~~~~~v~~~l~~~~~~~~-ii~s~tsg~~~~~l---~~~~~--~~~~~ig~h 137 (311)
T PRK06130 78 SGADLVIEAV--------------PEKLELKRDVFARLDGLCDPDT-IFATNTSGLPITAI---AQAVT--RPERFVGTH 137 (311)
T ss_pred ccCCEEEEec--------------cCcHHHHHHHHHHHHHhCCCCc-EEEECCCCCCHHHH---HhhcC--CcccEEEEc
Confidence 9999999985 2334455566666777664332 34577766543222 22221 246788874
No 67
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.21 E-value=8.4e-06 Score=77.80 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=74.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHH---HHhh-----cCCC--------CccEEEEecCCcc
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVA---ADVG-----HINT--------RSEVAGYMGNDQL 90 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~---~dl~-----~~~~--------~~~v~~~~~~~d~ 90 (358)
.||+|||+ |.+|..+|..++..++ +|++||+++. .... .++. .... ..+++. ++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~ 75 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL 75 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence 48999998 9999999999999887 8999999861 1110 0110 0000 113443 2456
Q ss_pred ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCce
Q 018314 91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL 170 (358)
Q Consensus 91 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kv 170 (358)
.+++++||+||++. ..+..+.+.+...+.++++... ++++|...+-...+ .... -.+.++
T Consensus 76 ~~~~~~aD~Vi~av--------------pe~~~~k~~~~~~l~~~~~~~~-il~~~tSt~~~~~l---~~~~--~~~~r~ 135 (288)
T PRK09260 76 KAAVADADLVIEAV--------------PEKLELKKAVFETADAHAPAEC-YIATNTSTMSPTEI---ASFT--KRPERV 135 (288)
T ss_pred HHhhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCHHHH---Hhhc--CCcccE
Confidence 67899999999985 2345566666667777775432 33566665432222 1222 234577
Q ss_pred Eeecc
Q 018314 171 FGVTT 175 (358)
Q Consensus 171 iG~t~ 175 (358)
+|+..
T Consensus 136 ~g~h~ 140 (288)
T PRK09260 136 IAMHF 140 (288)
T ss_pred EEEec
Confidence 78743
No 68
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.13 E-value=2e-05 Score=81.06 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=70.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH-HHHH--------hh---cCCC--CccEEEEecCCcccccc
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAAD--------VG---HINT--RSEVAGYMGNDQLGQAL 94 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~-~~~d--------l~---~~~~--~~~v~~~~~~~d~~~al 94 (358)
+||+|||+ |.||+.+|..++..++ +|++||+++... ...+ +. .... ..+++. ++|+.+++
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea~ 78 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEAV 78 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHHh
Confidence 58999998 9999999999999988 999999976211 1111 10 0000 112443 24666789
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcch
Q 018314 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV 152 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t 152 (358)
++||+||.+. ..+.++.+++...+.++++... |+.||..++..
T Consensus 79 ~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~ 121 (495)
T PRK07531 79 AGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP 121 (495)
T ss_pred cCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence 9999999985 3556677777777888876443 45888887644
No 69
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=98.13 E-value=4.1e-05 Score=77.44 Aligned_cols=116 Identities=11% Similarity=-0.047 Sum_probs=79.2
Q ss_pred ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCC
Q 018314 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSD 98 (358)
Q Consensus 21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aD 98 (358)
+.-...++|||.|+||+|+||++++..|...+. +|+.+|.... ......+. ...+++.... +-+..++.++|
T Consensus 113 ~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~~~~~~~~~~~---~~~~~~~~~~-Di~~~~~~~~D 186 (436)
T PLN02166 113 PVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFTGRKENLVHLF---GNPRFELIRH-DVVEPILLEVD 186 (436)
T ss_pred CcccccCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCccHhHhhhhc---cCCceEEEEC-ccccccccCCC
Confidence 555567789999999999999999999998887 9999997531 11111111 1123333321 22234678999
Q ss_pred EEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 018314 99 VVIIPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144 (358)
Q Consensus 99 iVIi~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~ 144 (358)
+||++|+... ....+..+.+..|+.....+++.+++.+. .+|.+
T Consensus 187 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~ 232 (436)
T PLN02166 187 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLT 232 (436)
T ss_pred EEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEE
Confidence 9999997532 22234567888999999999999998763 45544
No 70
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.09 E-value=4.1e-05 Score=73.85 Aligned_cols=121 Identities=19% Similarity=0.254 Sum_probs=75.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHH--------HhhcCCC---------CccEEEEecCCc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAA--------DVGHINT---------RSEVAGYMGNDQ 89 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~--------dl~~~~~---------~~~v~~~~~~~d 89 (358)
++||+|||+ |.+|..++..|+..++ +|++||.++.. .... .+.+... ..+++. ++|
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~ 75 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS 75 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence 468999997 9999999999999987 89999997611 1110 1211110 123443 256
Q ss_pred cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCc
Q 018314 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK 169 (358)
Q Consensus 90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~k 169 (358)
+.+++++||+|+++. ..+..+.+.+...+++..++..++ .||.......-+ .+... .+.+
T Consensus 76 ~~~a~~~ad~Vi~av--------------pe~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~~~~l---a~~~~--~~~~ 135 (308)
T PRK06129 76 LADAVADADYVQESA--------------PENLELKRALFAELDALAPPHAIL-ASSTSALLASAF---TEHLA--GRER 135 (308)
T ss_pred HHHhhCCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCcceE-EEeCCCCCHHHH---HHhcC--Cccc
Confidence 667889999999985 233445555666677777655444 566665433222 22221 2456
Q ss_pred eEeec
Q 018314 170 LFGVT 174 (358)
Q Consensus 170 viG~t 174 (358)
++|.+
T Consensus 136 ~~~~h 140 (308)
T PRK06129 136 CLVAH 140 (308)
T ss_pred EEEEe
Confidence 77765
No 71
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.06 E-value=2.5e-05 Score=74.45 Aligned_cols=117 Identities=17% Similarity=0.241 Sum_probs=80.5
Q ss_pred EEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccCCCCEEEEcCCCCCCCC
Q 018314 33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGVPRKPG 111 (358)
Q Consensus 33 IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVIi~ag~~~~~g 111 (358)
|+||+|++|++++..|...+...+|+.+|+........++.+.....-+.+- ++.+++.++++|+|+||++|+.....+
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~ 81 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPWG 81 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccccC
Confidence 8999999999999999998866699999987622221122222110011110 123567789999999999987533333
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcc
Q 018314 112 -MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST 151 (358)
Q Consensus 112 -~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~ 151 (358)
.....+..-|+.-.+.+.+..++..-+ -+|+|...+++
T Consensus 82 ~~~~~~~~~vNV~GT~nvl~aa~~~~Vk--rlVytSS~~vv 120 (280)
T PF01073_consen 82 DYPPEEYYKVNVDGTRNVLEAARKAGVK--RLVYTSSISVV 120 (280)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCCC--EEEEEcCccee
Confidence 457778999999999999999987544 35566666543
No 72
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.06 E-value=7e-05 Score=71.67 Aligned_cols=123 Identities=20% Similarity=0.296 Sum_probs=78.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHH--------HHhhcCCC---------CccEEEEecCCc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVA--------ADVGHINT---------RSEVAGYMGNDQ 89 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~--------~dl~~~~~---------~~~v~~~~~~~d 89 (358)
.+||+|||+ |.||..++..++..+. +|++||.++.. ..+ .++.+... ...+.. +++
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~ 77 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC---TTN 77 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe---eCC
Confidence 458999998 9999999999999886 99999987611 110 11211110 012333 234
Q ss_pred cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHhCCCCCC
Q 018314 90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK 168 (358)
Q Consensus 90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~ 168 (358)
+ +++++||+||.+. .++.++...+...+.++.+ ++ |++||...+...-+ .+..+ .+.
T Consensus 78 ~-~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~--il~s~tS~i~~~~l---~~~~~--~~~ 135 (295)
T PLN02545 78 L-EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSA--ILASNTSSISITRL---ASATQ--RPQ 135 (295)
T ss_pred H-HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHH---HhhcC--CCc
Confidence 3 6789999999986 4556677777777887764 55 34677777533222 22222 346
Q ss_pred ceEeeccccH
Q 018314 169 KLFGVTTLDV 178 (358)
Q Consensus 169 kviG~t~lds 178 (358)
+++|+...+.
T Consensus 136 r~~g~h~~~p 145 (295)
T PLN02545 136 QVIGMHFMNP 145 (295)
T ss_pred ceEEEeccCC
Confidence 8888854443
No 73
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.00 E-value=3.2e-05 Score=74.55 Aligned_cols=94 Identities=22% Similarity=0.423 Sum_probs=68.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc--CC--------CCccEEEEecCCccccccCCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH--IN--------TRSEVAGYMGNDQLGQALEDS 97 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~--~~--------~~~~v~~~~~~~d~~~al~~a 97 (358)
++||+|+|| |+-|.++|..|+.+++ +++||.+++. .+.++.. .. .+..+.. ++|+.+++++|
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~--~~~~i~~~~~N~~yLp~i~lp~~l~a---t~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEE--IVAEINETRENPKYLPGILLPPNLKA---TTDLAEALDGA 72 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHH--HHHHHHhcCcCccccCCccCCccccc---ccCHHHHHhcC
Confidence 479999998 9999999999999997 9999998762 2222322 21 2445554 47899999999
Q ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEee
Q 018314 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS 145 (358)
Q Consensus 98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~t 145 (358)
|+||+.. | ...++++++.+..+- ++..++.+|
T Consensus 73 d~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 73 DIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred CEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEe
Confidence 9999974 2 455667777776444 577777664
No 74
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=97.99 E-value=6.6e-06 Score=78.38 Aligned_cols=120 Identities=21% Similarity=0.248 Sum_probs=73.4
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEE----Eec----CCccccccC--CCC
Q 018314 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG----YMG----NDQLGQALE--DSD 98 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~----~~~----~~d~~~al~--~aD 98 (358)
|.|+||+|++|+.++..|+..++ .+|+++|.++ ......++.......+++. ..+ ...+.++++ +.|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 67999999999999999998865 5899999987 3444555532111112221 111 122345677 999
Q ss_pred EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee----CCCCcc
Q 018314 99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS----NPVNST 151 (358)
Q Consensus 99 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t----NP~d~~ 151 (358)
+|+++|....-+ ...-.+.+..|+--.+.+++...+++-+-++.+-| ||.++|
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnvm 138 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVM 138 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHH
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHH
Confidence 999998753322 23456778999999999999999998776666543 555444
No 75
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.98 E-value=5.2e-05 Score=74.88 Aligned_cols=105 Identities=17% Similarity=0.277 Sum_probs=70.7
Q ss_pred cccCCCCCCceEEEEcCCCChHHHHHHHHHhCCC-----CcEEEEEecCCc---HHHHHHhhcC--C--------CCccE
Q 018314 20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANT---PGVAADVGHI--N--------TRSEV 81 (358)
Q Consensus 20 ~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~-----~~ei~L~D~~~~---~~~~~dl~~~--~--------~~~~v 81 (358)
-|-+.....+||+|||+ |..|.++|..|+.++. ..+|.||..++. ...+.++.+. . .+.++
T Consensus 3 ~~~~~~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni 81 (365)
T PTZ00345 3 LFQKLRCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNI 81 (365)
T ss_pred chhhcccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCce
Confidence 35555566789999998 9999999999998761 238999988762 2334444421 1 23456
Q ss_pred EEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh--hC-CCeEEEEe
Q 018314 82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK--YC-PNAIVNMI 144 (358)
Q Consensus 82 ~~~~~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~--~~-p~a~iiv~ 144 (358)
... +|+.+++++||+||++. | ...++++++.++. +- ++..+|.+
T Consensus 82 ~~t---sdl~eav~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~ 128 (365)
T PTZ00345 82 VAV---SDLKEAVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISL 128 (365)
T ss_pred EEe---cCHHHHHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEE
Confidence 553 56778999999999874 1 3456777777776 33 34455544
No 76
>PLN02427 UDP-apiose/xylose synthase
Probab=97.98 E-value=7.8e-05 Score=73.81 Aligned_cols=120 Identities=13% Similarity=0.063 Sum_probs=75.3
Q ss_pred ccCCCCCCceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCcHHHHHHhhcC---CCCccEEEEec----CCcccc
Q 018314 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHI---NTRSEVAGYMG----NDQLGQ 92 (358)
Q Consensus 21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~---~~~~~v~~~~~----~~d~~~ 92 (358)
+--++.++|||.|+||+|++|++++..|... +. +|+.+|...... ..+... ....+++...+ ..++.+
T Consensus 7 ~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~--~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~ 82 (386)
T PLN02427 7 LDGKPIKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKI--KHLLEPDTVPWSGRIQFHRINIKHDSRLEG 82 (386)
T ss_pred CCCCcccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhh--hhhhccccccCCCCeEEEEcCCCChHHHHH
Confidence 3446677899999999999999999999887 45 899999654211 111111 01113333221 123456
Q ss_pred ccCCCCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 93 ALEDSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 93 al~~aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
+++++|+||++|+..... .....+.+..|+.-...+.+..++.+ ..+|.+|.
T Consensus 83 ~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS 136 (386)
T PLN02427 83 LIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST 136 (386)
T ss_pred HhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence 788999999999853221 12234556678877777788777665 34555543
No 77
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.88 E-value=9.2e-05 Score=71.38 Aligned_cols=101 Identities=21% Similarity=0.361 Sum_probs=65.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCC------CCccEEEEecCCccccccCCCCE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHIN------TRSEVAGYMGNDQLGQALEDSDV 99 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~------~~~~v~~~~~~~d~~~al~~aDi 99 (358)
||||+|||+ |.+|+.++..|+..++ ++.+||+++.. ....+..+.. .+..+.. ++|+.++++++|+
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~ 74 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL 74 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence 579999998 9999999999999887 89999987522 1111110100 0112332 2355567889999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc
Q 018314 100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS 150 (358)
Q Consensus 100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~ 150 (358)
||++... ..++++.+.+..+. |+.++|..+|-++.
T Consensus 75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence 9998621 12344545555553 67778888877653
No 78
>PLN00198 anthocyanidin reductase; Provisional
Probab=97.88 E-value=0.0003 Score=68.20 Aligned_cols=175 Identities=13% Similarity=0.076 Sum_probs=96.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEec----CCccccccCCCCEEE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVI 101 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVI 101 (358)
.++||.|+||+|++|++++..|...+. +|+.++++. ......++.......+++.+.+ ..++.+.++++|+||
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 85 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF 85 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence 457899999999999999999999886 787776654 2222111111110012333221 123446678999999
Q ss_pred EcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC-----------cchHHH--HHHHHHhCCCCC
Q 018314 102 IPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN-----------STVPIA--AEVFKKAGTYNE 167 (358)
Q Consensus 102 i~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d-----------~~t~~~--~~~~~~sg~~~~ 167 (358)
++|+.......+ ..+++..|+.....+.+.+.+...-..+|.+|.-.. .+..-. ..-..... .+|
T Consensus 86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~-~~p 164 (338)
T PLN00198 86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSE-KPP 164 (338)
T ss_pred EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhc-CCc
Confidence 999743222122 234668899999999999887642224444433110 000000 00000011 234
Q ss_pred CceEeeccccHHHHHHHHHHHcCCCCCCCc-eEEEeec
Q 018314 168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (358)
Q Consensus 168 ~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 204 (358)
...+|.+.....++...+++..|++..-++ ..|+|.+
T Consensus 165 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~ 202 (338)
T PLN00198 165 TWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS 202 (338)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence 445566544445555556666677655554 3477765
No 79
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=97.87 E-value=0.00024 Score=69.39 Aligned_cols=168 Identities=15% Similarity=0.054 Sum_probs=99.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhh-cC--CCCccEEEEec-C---CccccccCCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVG-HI--NTRSEVAGYMG-N---DQLGQALEDS 97 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~-~~--~~~~~v~~~~~-~---~d~~~al~~a 97 (358)
+++||.|+||+|++|++++..|...+. +|+.+|.... .....++. .. ....+++.+.+ - .++.+.++++
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 457999999999999999999998886 8999997541 11111111 00 00113333321 1 1233457899
Q ss_pred CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC------CCcchHHHHHHHHHhCCCCCCc
Q 018314 98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP------VNSTVPIAAEVFKKAGTYNEKK 169 (358)
Q Consensus 98 DiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP------~d~~t~~~~~~~~~sg~~~~~k 169 (358)
|+||++|+....+ .+...+....|+.-..++.+.+++.... .++.+|.. .+.. . ..... ..|..
T Consensus 92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~~--~----~e~~~-~~p~~ 163 (348)
T PRK15181 92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDLP--K----IEERI-GRPLS 163 (348)
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCCC--C----CCCCC-CCCCC
Confidence 9999999754322 2334567889999999999999887543 33433311 1110 0 01111 23445
Q ss_pred eEeeccccHHHHHHHHHHHcCCCCCCCce-EEEeec
Q 018314 170 LFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGH 204 (358)
Q Consensus 170 viG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h 204 (358)
.+|.+.+...++....++..+++...++. .++|.+
T Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~ 199 (348)
T PRK15181 164 PYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRR 199 (348)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence 66776554555555556666777666653 477865
No 80
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.86 E-value=0.00024 Score=72.66 Aligned_cols=124 Identities=19% Similarity=0.256 Sum_probs=86.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEec----CCccccccCC--CC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG----NDQLGQALED--SD 98 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~--aD 98 (358)
+.+.|-|+||+|++|+.++..++..++ .+|+++|.+| ......+|.+.....++..+.+ .+-++.++++ .|
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 456899999999999999998888753 6999999998 3344445554321233444332 1334568888 99
Q ss_pred EEEEcCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe----eCCCCcc
Q 018314 99 VVIIPAGVPRKPGM--TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI----SNPVNST 151 (358)
Q Consensus 99 iVIi~ag~~~~~g~--~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~----tNP~d~~ 151 (358)
+|+++|....-|=. .-.+-...|+--.+++++...+++=+..+++- .||.++|
T Consensus 328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm 386 (588)
T COG1086 328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM 386 (588)
T ss_pred eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh
Confidence 99999976554433 34567789999999999999988866655554 3555443
No 81
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.86 E-value=0.00012 Score=66.38 Aligned_cols=97 Identities=24% Similarity=0.350 Sum_probs=64.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~ 107 (358)
||+++|+|+ |++|++++..++..++ ||..-..+..+.....-... .+.+++. ..++|.+.||+||++. |
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l--~~~i~~~----~~~dA~~~aDVVvLAV--P 69 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAAL--GPLITGG----SNEDAAALADVVVLAV--P 69 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhh--ccccccC----ChHHHHhcCCEEEEec--c
Confidence 679999997 9999999999999998 88888666532222211111 1345542 2368999999999985 2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (358)
Q Consensus 108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d 149 (358)
+.....+.+++...+ .+-++|-.|||.+
T Consensus 70 ----------~~a~~~v~~~l~~~~----~~KIvID~tnp~~ 97 (211)
T COG2085 70 ----------FEAIPDVLAELRDAL----GGKIVIDATNPIE 97 (211)
T ss_pred ----------HHHHHhHHHHHHHHh----CCeEEEecCCCcc
Confidence 234444444444433 3668888999963
No 82
>PLN02206 UDP-glucuronate decarboxylase
Probab=97.85 E-value=0.00023 Score=72.23 Aligned_cols=118 Identities=12% Similarity=-0.020 Sum_probs=77.6
Q ss_pred ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEecCCccccccCCCC
Q 018314 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSD 98 (358)
Q Consensus 21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aD 98 (358)
+.-+..+.|||.|+||+|+||++++..|...+. +|+.+|... ......+. .. ..+++.... +-+..++.++|
T Consensus 112 ~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~~~--~~-~~~~~~i~~-D~~~~~l~~~D 185 (442)
T PLN02206 112 PLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKENVMHH--FS-NPNFELIRH-DVVEPILLEVD 185 (442)
T ss_pred ccccccCCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhhhh--cc-CCceEEEEC-CccChhhcCCC
Confidence 444556779999999999999999999999887 899888642 11111111 11 123333221 11234678899
Q ss_pred EEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 99 VVIIPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 99 iVIi~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
+||++|+... ....+-.+.+..|+.....+.+.+++... .+|.++.
T Consensus 186 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~SS 233 (442)
T PLN02206 186 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 233 (442)
T ss_pred EEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECC
Confidence 9999997532 22234467788999999999999988753 4554433
No 83
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.82 E-value=0.00024 Score=71.33 Aligned_cols=114 Identities=25% Similarity=0.296 Sum_probs=70.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC----------------CCccEEEEecCCcccc
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----------------TRSEVAGYMGNDQLGQ 92 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~----------------~~~~v~~~~~~~d~~~ 92 (358)
|||+|||. |.||..++..|+..++ +|+.||+++.. ..++.... ...+++. ++++.+
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED 72 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence 58999997 9999999999999888 89999987622 22222211 0112443 245567
Q ss_pred ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-eCCCCcchHHHH
Q 018314 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPIAA 156 (358)
Q Consensus 93 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~-tNP~d~~t~~~~ 156 (358)
++++||+||++...|...+. .-+...+.+..+.+.++. ++.+++.. |-|.+....+..
T Consensus 73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~ 132 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVK 132 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHH
Confidence 78999999999877654321 123444444455555543 44444332 455555545543
No 84
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.78 E-value=0.00015 Score=70.92 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=66.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcC----C-------CCccEEEEecCCcccccc
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----N-------TRSEVAGYMGNDQLGQAL 94 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~----~-------~~~~v~~~~~~~d~~~al 94 (358)
++++||+|||+ |.+|.+++..|+..+ ++++|..++.. ..++... . .+.++.. ++|+.+++
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~--~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a~ 75 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAET--ADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEAA 75 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHH--HHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHHH
Confidence 46789999998 999999999999887 47788865422 2222211 0 1123443 35666789
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc
Q 018314 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS 150 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~ 150 (358)
+++|+||++.- ...++++++.+..+- ++..+|.++|-.+.
T Consensus 76 ~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 76 NCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred hcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 99999999851 234556666666543 56678889998764
No 85
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.78 E-value=5.7e-05 Score=59.64 Aligned_cols=94 Identities=22% Similarity=0.304 Sum_probs=59.9
Q ss_pred eEEEEcCCCChHHHHHHHHHhCC-CCcEEEEE-ecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNP-LVSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~-D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~ 107 (358)
||+|||+ |++|.+++..+...+ ...+|.++ +.++ ....++.... . +..+ ..+..+++++||+||++.-
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~-- 70 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK-- 70 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence 8999997 999999999998887 23488866 7754 2222232211 1 2222 1134688999999999862
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
| ..+.++++.+....++..+|-++||
T Consensus 71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 1 2244555566445577788888776
No 86
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.76 E-value=0.00017 Score=70.63 Aligned_cols=95 Identities=19% Similarity=0.364 Sum_probs=62.3
Q ss_pred eEEEEcCCCChHHHHHHHHHhCC------CCcEEEEEecCC---cHHHHHHhh--cCC--------CCccEEEEecCCcc
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNP------LVSRLALYDIAN---TPGVAADVG--HIN--------TRSEVAGYMGNDQL 90 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~------~~~ei~L~D~~~---~~~~~~dl~--~~~--------~~~~v~~~~~~~d~ 90 (358)
||+|||| |+.|.++|..|+.++ +..+|.||.+++ .......++ |.. .+..++. ++|+
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl 76 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL 76 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence 7999998 999999999999876 224999999854 222333332 211 1334554 3577
Q ss_pred ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe
Q 018314 91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI 144 (358)
Q Consensus 91 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~ 144 (358)
.+++++||+||++. | ...++++++.+..+- ++..+|.+
T Consensus 77 ~eal~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~ 115 (342)
T TIGR03376 77 VEAAKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISC 115 (342)
T ss_pred HHHHhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEE
Confidence 88999999999974 2 345566666666553 34445544
No 87
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=97.76 E-value=0.00028 Score=75.07 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=104.7
Q ss_pred cccccccCCCCCCceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-CCc----
Q 018314 16 AGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---- 89 (358)
Q Consensus 16 ~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---- 89 (358)
.|.|++.-+-.++|||.|+||+|++|++++..|... ++ +|+.+|....... ++... .+++...+ -.|
T Consensus 303 ~~~~~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~~--~~~~~---~~~~~~~gDl~d~~~~ 375 (660)
T PRK08125 303 RLNSKPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAIS--RFLGH---PRFHFVEGDISIHSEW 375 (660)
T ss_pred EecccchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhhh--hhcCC---CceEEEeccccCcHHH
Confidence 355665555568899999999999999999988874 56 8999997652111 11111 12332211 111
Q ss_pred cccccCCCCEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC---
Q 018314 90 LGQALEDSDVVIIPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT--- 164 (358)
Q Consensus 90 ~~~al~~aDiVIi~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~--- 164 (358)
+.++++++|+||++|+... .......+.+..|+.....+.+.++++. . .+|.+|.. .+....-...+.+...
T Consensus 376 l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~-~vyg~~~~~~~~E~~~~~~ 452 (660)
T PRK08125 376 IEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTS-EVYGMCTDKYFDEDTSNLI 452 (660)
T ss_pred HHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcch-hhcCCCCCCCcCccccccc
Confidence 2346789999999987543 2223455677889999999999999876 3 44434332 1100000000001000
Q ss_pred ---C-CCCceEeeccccHHHHHHHHHHHcCCCCCCCce-EEEeec
Q 018314 165 ---Y-NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGH 204 (358)
Q Consensus 165 ---~-~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h 204 (358)
. ++...+|.+.....++....++..+++..-++. .++|.+
T Consensus 453 ~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~ 497 (660)
T PRK08125 453 VGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR 497 (660)
T ss_pred cCCCCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence 0 122356776554556656667777777666664 467764
No 88
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=97.73 E-value=0.00035 Score=66.25 Aligned_cols=167 Identities=13% Similarity=0.059 Sum_probs=94.1
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe----cCCccccccCC--CCEE
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM----GNDQLGQALED--SDVV 100 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~--aDiV 100 (358)
||.|+||+|++|++++..|...+...+|+++|.... .....++... .++.... +.+++.+++++ +|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 589999999999999998887663348888886431 1111222211 1222221 11234456666 8999
Q ss_pred EEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC-----CcchHHHHHHHHHhCCCCCCceEee
Q 018314 101 IIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-----NSTVPIAAEVFKKAGTYNEKKLFGV 173 (358)
Q Consensus 101 Ii~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~-----d~~t~~~~~~~~~sg~~~~~kviG~ 173 (358)
|.+|+.... ....-...+..|......+++.+.+...+..++.+|... .....+ .......+...+|.
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~-----~e~~~~~~~~~Y~~ 152 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAF-----TETTPLAPSSPYSA 152 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCc-----CCCCCCCCCCchHH
Confidence 999875321 122334567889999999999988876555555544311 000000 01111334445565
Q ss_pred ccccHHHHHHHHHHHcCCCCCCCce-EEEeec
Q 018314 174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGH 204 (358)
Q Consensus 174 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h 204 (358)
+.....++-..+++..+++..-++. .++|..
T Consensus 153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~ 184 (317)
T TIGR01181 153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY 184 (317)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence 5443445545556666766544443 356643
No 89
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.73 E-value=0.00017 Score=63.05 Aligned_cols=65 Identities=23% Similarity=0.328 Sum_probs=46.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
|+||++||. |.+|+.++..|...++ +|+.||++. ....++.+.. .+.. +++.+++++||+|+.+.
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~~---~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEVA---DSPAEAAEQADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEEE---SSHHHHHHHBSEEEE-S
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhhh---hhhhhHhhcccceEeec
Confidence 679999997 9999999999999998 999999864 2233344322 3332 34678899999999974
No 90
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.72 E-value=0.00019 Score=69.56 Aligned_cols=100 Identities=14% Similarity=0.339 Sum_probs=63.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc--C------CCCccEEEEecCCcccccc-CCCCE
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH--I------NTRSEVAGYMGNDQLGQAL-EDSDV 99 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~--~------~~~~~v~~~~~~~d~~~al-~~aDi 99 (358)
|||+|||| |.+|..++..|...+. +|.||++++.......-.+ . ..+..++.. +|+.+++ .++|+
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~Dl 74 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK---SAIDEVLSDNATC 74 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe---CCHHHHHhCCCCE
Confidence 58999998 9999999999999886 8999998652211111111 1 112234432 4455566 58999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-h-CCCeEEEEeeCCCCc
Q 018314 100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-Y-CPNAIVNMISNPVNS 150 (358)
Q Consensus 100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~-~p~a~iiv~tNP~d~ 150 (358)
||++.- ..-+.++++.+.. + .++..++..+|=.+.
T Consensus 75 iiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 75 IILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred EEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 999851 2334444555554 3 467777778887753
No 91
>PLN02650 dihydroflavonol-4-reductase
Probab=97.71 E-value=0.00067 Score=66.16 Aligned_cols=116 Identities=13% Similarity=0.051 Sum_probs=72.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcC-CCCccEEEEe----cCCccccccCCCCEEE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHI-NTRSEVAGYM----GNDQLGQALEDSDVVI 101 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~-~~~~~v~~~~----~~~d~~~al~~aDiVI 101 (358)
.++|.|+||+|++|++++..|+..+. +|++++.+.. .....++... ....++.... ....+.++++++|+||
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 44899999999999999999998887 8888877542 1111122111 1111222221 1123456788999999
Q ss_pred EcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 102 IPAGVPRKPG-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 102 i~ag~~~~~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
++|+...... ....+.+..|+.-...+.+.+.+...-..+|.+|
T Consensus 83 H~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S 127 (351)
T PLN02650 83 HVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS 127 (351)
T ss_pred EeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 9987532111 1223567889999999999988765323455443
No 92
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.71 E-value=0.00017 Score=69.48 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=60.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~ 106 (358)
..|||+|||+ |.+|.+++..|...++ +|.+||+++. +++.+++++||+||++.
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~v-- 55 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAV-- 55 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEEC--
Confidence 3579999997 9999999999999987 9999998642 12356788999999985
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEeeCCC
Q 018314 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPV 148 (358)
Q Consensus 107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~p~a~iiv~tNP~ 148 (358)
| .+.++++++.+..+ .++.+++..|+..
T Consensus 56 p--------------~~~~~~v~~~l~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 56 S--------------MKGVRPVAEQVQALNLPPETIIVTATKGL 85 (308)
T ss_pred C--------------hHHHHHHHHHHHHhcCCCCcEEEEeCCcc
Confidence 1 13455566666653 4677777777733
No 93
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=97.70 E-value=0.00045 Score=66.78 Aligned_cols=120 Identities=14% Similarity=0.078 Sum_probs=82.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cH--HHHHHhhcCCCCccEEEEe----cCCccccccCCCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TP--GVAADVGHINTRSEVAGYM----GNDQLGQALEDSD 98 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aD 98 (358)
..++|+|+||+|++|+.+...|.++|+ +|+=-=+++ .+ .+..+|.... .+++.+. ..+.+.+|++|||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence 567999999999999999999999998 554443333 11 2345555333 1233321 2345678999999
Q ss_pred EEEEcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcc
Q 018314 99 VVIIPAGVPRKPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST 151 (358)
Q Consensus 99 iVIi~ag~~~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~ 151 (358)
.|+++|....-... .-.+++.-.++-...+.+.+.++. ...=+++|+....+
T Consensus 81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~aAv 133 (327)
T KOG1502|consen 81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTAAV 133 (327)
T ss_pred EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHHHh
Confidence 99999975332222 244688888999999999999887 44445677766444
No 94
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=97.69 E-value=0.00075 Score=64.58 Aligned_cols=107 Identities=13% Similarity=0.104 Sum_probs=69.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcC-CCCccEEEEe----cCCccccccCCCCEE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHI-NTRSEVAGYM----GNDQLGQALEDSDVV 100 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~-~~~~~v~~~~----~~~d~~~al~~aDiV 100 (358)
+.+||.|+||+|++|++++..|...++ +|+.++.+.. ......+... ....+++... ...++.++++++|+|
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 346899999999999999999999887 8888877652 1111222111 0011233221 112345678899999
Q ss_pred EEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhh
Q 018314 101 IIPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKY 135 (358)
Q Consensus 101 Ii~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~ 135 (358)
|++|+..... .....+.+..|+.-...+.+.+.+.
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~ 116 (322)
T PLN02662 81 FHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV 116 (322)
T ss_pred EEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999753321 2223367788999999999988776
No 95
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.69 E-value=0.00054 Score=65.31 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=62.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC---CccEEEE-ecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---RSEVAGY-MGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~---~~~v~~~-~~~~d~~~al~~aDiVIi~a 104 (358)
|||+|+|+ |.+|..++..|...+. +|.++|.+..... .+..... ....... ...++..+ ++++|+||++.
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLD--ALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV 74 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence 58999998 9999999999998886 8999998542111 1111110 0011100 01233333 48999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcchH
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVP 153 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t~ 153 (358)
... . ..++.+.+..+ .++..++...|..+....
T Consensus 75 k~~------------~----~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~ 108 (304)
T PRK06522 75 KAY------------Q----LPAALPSLAPLLGPDTPVLFLQNGVGHLEE 108 (304)
T ss_pred ccc------------c----HHHHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence 321 1 23344444443 366788889999876554
No 96
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=97.68 E-value=0.00032 Score=69.96 Aligned_cols=113 Identities=20% Similarity=0.266 Sum_probs=66.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC--------------CCccEEEEecCCcccccc
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--------------TRSEVAGYMGNDQLGQAL 94 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--------------~~~~v~~~~~~~d~~~al 94 (358)
|||+|||+ |.||..+|..++. ++ +|+.||+++.. +..+.... ...++.. +.|..++.
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~l~~---t~~~~~~~ 71 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIHFNA---TLDKNEAY 71 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCcEEE---ecchhhhh
Confidence 58999997 9999999987775 66 89999998621 11222210 0113332 34455778
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-EeeCCCCcchHHH
Q 018314 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN-MISNPVNSTVPIA 155 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~ii-v~tNP~d~~t~~~ 155 (358)
++||+||++...|...... .-+...+++.++.|.+..|+.++| --|-|.+..-.+.
T Consensus 72 ~~ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~ 128 (388)
T PRK15057 72 RDADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMH 128 (388)
T ss_pred cCCCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHH
Confidence 9999999997766322111 123344444445554434444433 3466776655544
No 97
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.67 E-value=0.00026 Score=68.80 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=61.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc-------C-CCCccEEEEecCCccccccCCCCE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-------I-NTRSEVAGYMGNDQLGQALEDSDV 99 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~-------~-~~~~~v~~~~~~~d~~~al~~aDi 99 (358)
+|||+|||+ |.+|..++..|+..++ +|++||+++.......-.+ . ..+.++.. ++++.++++++|+
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~aD~ 77 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYP---TADPEEALAGADF 77 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCCCE
Confidence 679999998 9999999999998887 8999998652222111111 0 01112333 2455677899999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314 100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (358)
Q Consensus 100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d 149 (358)
||++.-. . .++++.+. ..|+.+++.++|..+
T Consensus 78 Vi~~v~~----~------------~~~~v~~~---l~~~~~vi~~~~Gi~ 108 (328)
T PRK14618 78 AVVAVPS----K------------ALRETLAG---LPRALGYVSCAKGLA 108 (328)
T ss_pred EEEECch----H------------HHHHHHHh---cCcCCEEEEEeeccc
Confidence 9998521 0 12333322 335667788888654
No 98
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.66 E-value=0.00031 Score=68.37 Aligned_cols=99 Identities=24% Similarity=0.255 Sum_probs=62.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC-------------CccEEEEecCCcccccc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-------------RSEVAGYMGNDQLGQAL 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~-------------~~~v~~~~~~~d~~~al 94 (358)
+|||+|||+ |.||..++..|...++ +|.++|+++.. . .+..... +.++.. +++. +++
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~-~--~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~-~~~ 71 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG-D--ELRAHGLTLTDYRGRDVRVPPSAIAF---STDP-AAL 71 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH-H--HHHhcCceeecCCCcceecccceeEe---ccCh-hhc
Confidence 478999998 9999999999999987 89999975421 1 1111110 011222 2343 578
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcch
Q 018314 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTV 152 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t 152 (358)
+++|+||++...+. ..++++.+..+ .++.+++..+|..+...
T Consensus 72 ~~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~~ 114 (341)
T PRK08229 72 ATADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNAD 114 (341)
T ss_pred cCCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcHH
Confidence 99999999863221 12333444444 35677777889876543
No 99
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.65 E-value=0.00046 Score=65.96 Aligned_cols=119 Identities=10% Similarity=0.129 Sum_probs=70.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC-----CccEEEE-ecCCccccccCCCCEEEE
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RSEVAGY-MGNDQLGQALEDSDVVII 102 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~-----~~~v~~~-~~~~d~~~al~~aDiVIi 102 (358)
|||+|+|+ |.+|..++..|+..++ +|.+++. +..-. .+.+... ....... ...+|..+..+++|+||+
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r-~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR-PKRAK--ALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec-HHHHH--HHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence 68999998 9999999999999887 8999998 41111 1221110 0011000 001333445589999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe-eccc
Q 018314 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG-VTTL 176 (358)
Q Consensus 103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG-~t~l 176 (358)
+...+ -+.++.+.+..+ .++..++.+.|..+....+. +. +|++++++ ++..
T Consensus 75 avk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~----~~---~~~~~v~~g~~~~ 127 (305)
T PRK12921 75 AVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLE----PY---FGRERVLGGVVFI 127 (305)
T ss_pred Eeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHH----Hh---CCcccEEEEEEEE
Confidence 86321 123344455544 35677888899887554331 22 66677774 4433
No 100
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=97.59 E-value=0.00057 Score=66.21 Aligned_cols=113 Identities=14% Similarity=0.209 Sum_probs=74.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH--HHHHhhcCCCCccEEEEe----cCCccccccCCCCEEE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVI 101 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~--~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDiVI 101 (358)
.++|.|+||+|++|++++..|+..+...+|+++|.+.... ...++.. .++..+. +..++.+++++.|+||
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 4689999999999999999988875334899998765221 1122211 1232221 1123456778899999
Q ss_pred EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 102 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
++||....+ ..+..+.+..|+.-...+.+.+.+.+.. .+|.+|
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S 124 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS 124 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 999864322 2344577889999999999998876543 455454
No 101
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=97.57 E-value=0.0013 Score=64.02 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=71.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe----cCCccccccCC--CCE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM----GNDQLGQALED--SDV 99 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~--aDi 99 (358)
+++|.|+||+|++|++++..|+..+. +|+.+|.+.. ......+.. . .++.... +..++.+.+++ .|+
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNL-A--KKIEDHFGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhh-c--CCceEEEccCCCHHHHHHHHhhcCCCE
Confidence 46899999999999999999999886 8998987652 111111211 1 1121111 11223344554 599
Q ss_pred EEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 100 VIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
||++|+.+... ..+-...+..|+.....+.+.+.+.+....+|.+|.
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 79 VFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred EEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 99999854221 123345678889889999998877653335565554
No 102
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=97.54 E-value=0.00062 Score=66.28 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=69.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC-----CccccccCCCCEEE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVVI 101 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-----~d~~~al~~aDiVI 101 (358)
||||.|+||+|++|+.++..|... +. +|+.+|.... ...++... ..++.+... .++.++++++|+||
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~--~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTD--RLGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHH--HHHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 469999999999999999998875 45 8999996431 11122111 123332211 12234568999999
Q ss_pred EcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 102 IPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 102 i~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
++|+... ....+-......|+.....+.+..++.. ..+|.+|.
T Consensus 74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS 118 (347)
T PRK11908 74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST 118 (347)
T ss_pred ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence 9987532 2223334556778888888888888764 35554443
No 103
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.53 E-value=0.00036 Score=67.23 Aligned_cols=105 Identities=10% Similarity=-0.021 Sum_probs=69.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe----cCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDiVIi~a 104 (358)
|||.|+||+|++|+.++..|...++ +|+.++++.... ..+.+. .++... +.+++.++++++|+||.++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~----~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEW----GAELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhc----CCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 5899999999999999999998887 899998764221 112211 112111 1234567899999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
+.... ...++...|......+.+.+++.+-+ .+|.+|
T Consensus 73 ~~~~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S 109 (317)
T CHL00194 73 TSRPS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS 109 (317)
T ss_pred CCCCC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence 53221 11234566778888888888887654 344443
No 104
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.52 E-value=0.00043 Score=66.86 Aligned_cols=123 Identities=15% Similarity=0.257 Sum_probs=72.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHH---HhhcCCCCc---cEEEEecCCccccccCCC
Q 018314 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA---DVGHINTRS---EVAGYMGNDQLGQALEDS 97 (358)
Q Consensus 24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~---dl~~~~~~~---~v~~~~~~~d~~~al~~a 97 (358)
|+..+|||+|+|+ |.||..++..|...++ ++.+++.+..+.... .+....... .+... ++ .++...+
T Consensus 1 ~~~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~-~~~~~~~ 73 (313)
T PRK06249 1 MDSETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAY---RS-AEDMPPC 73 (313)
T ss_pred CCCcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEE---cc-hhhcCCC
Confidence 3456689999998 9999999999999886 899999865221111 000000000 12221 22 2356789
Q ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-cc
Q 018314 98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TT 175 (358)
Q Consensus 98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~ 175 (358)
|+||++.-.. + . .+..+.+... .|++.++...|=.+....+. +. +|+.+|++- +.
T Consensus 74 D~vilavK~~----~--------~----~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~----~~---~~~~~v~~g~~~ 130 (313)
T PRK06249 74 DWVLVGLKTT----A--------N----ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLR----EI---LPAEHLLGGLCF 130 (313)
T ss_pred CEEEEEecCC----C--------h----HhHHHHHhhhcCCCCEEEEecCCCCcHHHHH----HH---CCCCcEEEEeee
Confidence 9999985221 1 1 2233333333 37888888899887544332 22 677787754 44
Q ss_pred c
Q 018314 176 L 176 (358)
Q Consensus 176 l 176 (358)
.
T Consensus 131 ~ 131 (313)
T PRK06249 131 I 131 (313)
T ss_pred E
Confidence 3
No 105
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.51 E-value=0.0012 Score=57.90 Aligned_cols=93 Identities=27% Similarity=0.296 Sum_probs=66.3
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-C---CccccccCCCCEEEEcCCC
Q 018314 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-N---DQLGQALEDSDVVIIPAGV 106 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~aDiVIi~ag~ 106 (358)
|.|+||+|.+|+.++..|...+. +|+++-+++.+.. + ...++...+ . +++.++++++|.||.++|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~~--~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKAE--D------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGHH--H------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhcc--c------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 78999999999999999999996 9999987753222 1 123444332 1 2346789999999999876
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
+.+ ..+.++.+.+.+++.+.. .++.+|
T Consensus 71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s 97 (183)
T PF13460_consen 71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS 97 (183)
T ss_dssp TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred hcc-----------cccccccccccccccccc-cceeee
Confidence 543 277888888888887644 344333
No 106
>PLN02214 cinnamoyl-CoA reductase
Probab=97.50 E-value=0.0017 Score=63.44 Aligned_cols=105 Identities=13% Similarity=0.030 Sum_probs=71.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH---HHHHHhhcCCCCccEEEEe----cCCccccccCCCCE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYM----GNDQLGQALEDSDV 99 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDi 99 (358)
++++|.|+||+|++|++++..|...+. +|+..+.+... .....+.... .++.... +..++.++++++|+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~ 84 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGGK--ERLILCKADLQDYEALKAAIDGCDG 84 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCCC--CcEEEEecCcCChHHHHHHHhcCCE
Confidence 456899999999999999999999887 88888875421 1111222111 1233221 12344567889999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Q 018314 100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138 (358)
Q Consensus 100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~ 138 (358)
||++|+... ....+.+..|+.-...+.+.+++...+
T Consensus 85 Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~ 120 (342)
T PLN02214 85 VFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK 120 (342)
T ss_pred EEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999997532 234566788999999999998877544
No 107
>PLN02778 3,5-epimerase/4-reductase
Probab=97.50 E-value=0.0021 Score=61.61 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=64.6
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEE
Q 018314 23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV 100 (358)
Q Consensus 23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV 100 (358)
+.+...|||.|+||+|++|++++..|...+. ++++...+. ...... ++.+ .+.|+|
T Consensus 4 ~~~~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~~~~~v~~------------------~l~~--~~~D~V 61 (298)
T PLN02778 4 TAGSATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLENRASLEA------------------DIDA--VKPTHV 61 (298)
T ss_pred CCCCCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccCCHHHHHH------------------HHHh--cCCCEE
Confidence 4455668999999999999999999998886 676442211 111111 1111 268999
Q ss_pred EEcCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHhhCCC
Q 018314 101 IIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPN 138 (358)
Q Consensus 101 Ii~ag~~~~~g-----~~r~~~~~~N~~i~~~i~~~i~~~~p~ 138 (358)
|++|+....+. ....+.+..|......+++..++.+..
T Consensus 62 iH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~ 104 (298)
T PLN02778 62 FNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV 104 (298)
T ss_pred EECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99998643222 234677889999999999999988643
No 108
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=97.49 E-value=0.0029 Score=60.82 Aligned_cols=117 Identities=13% Similarity=0.079 Sum_probs=71.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhc-CCCCccEEEEe----cCCccccccCCCCEE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGH-INTRSEVAGYM----GNDQLGQALEDSDVV 100 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~-~~~~~~v~~~~----~~~d~~~al~~aDiV 100 (358)
+.++|.|+||+|++|++++..|...+. +|++.+++... .....+.. .....+++... ...++.+++++.|+|
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 356899999999999999999999887 78877765421 11111111 11111233221 112344567889999
Q ss_pred EEcCCCCCCC-CC-CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 101 IIPAGVPRKP-GM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 101 Ii~ag~~~~~-g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
|++||..... .. .-...+..|+.....+.+.+.++.....+|++|
T Consensus 82 ih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~S 128 (325)
T PLN02989 82 FHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTS 128 (325)
T ss_pred EEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 9999853211 11 224567788888888888887754223444443
No 109
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=97.47 E-value=0.0019 Score=62.95 Aligned_cols=176 Identities=14% Similarity=0.102 Sum_probs=95.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe----cCCccccccC--CCCEEE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALE--DSDVVI 101 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~--~aDiVI 101 (358)
|+||.|+||+|++|++++..|...+. ..++++|..+.......+.+.....++.... +.+++.++++ +.|+||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 46899999999999999999998874 2466777543211111121110001222211 1123344555 389999
Q ss_pred EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhC-------CC-eEEEEeeCCCCcchHHHH--HHHHHhCCCCCCc
Q 018314 102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYC-------PN-AIVNMISNPVNSTVPIAA--EVFKKAGTYNEKK 169 (358)
Q Consensus 102 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-a~iiv~tNP~d~~t~~~~--~~~~~sg~~~~~k 169 (358)
++||..... ..........|+.....+.+.+.++. +. ..++.+|... +....-. .-..+.....+..
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~E~~~~~p~s 158 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDE-VYGDLHSTDDFFTETTPYAPSS 158 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchh-hcCCCCCCCCCcCCCCCCCCCC
Confidence 999864321 12235677889988888888887652 12 2344443321 1000000 0000111133445
Q ss_pred eEeeccccHHHHHHHHHHHcCCCCCCCc-eEEEeecC
Q 018314 170 LFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA 205 (358)
Q Consensus 170 viG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~hg 205 (358)
.+|.+.....++...+++..+++..-++ ..++|.+.
T Consensus 159 ~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~ 195 (355)
T PRK10217 159 PYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH 195 (355)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence 5666655556666666777777655555 35677653
No 110
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=97.46 E-value=0.00094 Score=63.77 Aligned_cols=112 Identities=17% Similarity=0.142 Sum_probs=73.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccCCCCEEEEcCCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGVP 107 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVIi~ag~~ 107 (358)
|||.|+||+|.+|+.++..|...+. +|+.+|.+.... .++.+.... -+..- ....++.++++++|+||..++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~-~~~~D~~~~~~l~~~~~~~d~vi~~a~~~ 75 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLDVE-IVEGDLRDPASLRKAVAGCRALFHVAADY 75 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCCce-EEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence 4899999999999999999998886 899999865221 111111100 11110 01123456788999999998653
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
.....+..+....|+.....+.+.+.+..-. .+|..+.
T Consensus 76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS 113 (328)
T TIGR03466 76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSS 113 (328)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEec
Confidence 2223445667788999899999988876533 3444443
No 111
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=97.45 E-value=0.00055 Score=67.67 Aligned_cols=169 Identities=12% Similarity=0.018 Sum_probs=95.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe--cCCccccccCCCCEEEEc
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVIIP 103 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVIi~ 103 (358)
.+.|||.|+||+|++|++++..|...++ +|+.+|..... .. ............. ...++.++++++|+||++
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~ 92 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-HM---SEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNL 92 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-cc---ccccccceEEECCCCCHHHHHHHHhCCCEEEEc
Confidence 4568999999999999999999998887 89999975311 00 0000000111000 011233456799999999
Q ss_pred CCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC-----Ccch---HHHHHHHHH-hCCCCCCceE
Q 018314 104 AGVPRKPG---MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-----NSTV---PIAAEVFKK-AGTYNEKKLF 171 (358)
Q Consensus 104 ag~~~~~g---~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~-----d~~t---~~~~~~~~~-sg~~~~~kvi 171 (358)
|+.....+ ......+..|+.....+++.+++...+.+ |.+|... .... .+. -.. .+ +.|...+
T Consensus 93 Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~-V~~SS~~vYg~~~~~~~~~~~~---E~~~~p-~~p~s~Y 167 (370)
T PLN02695 93 AADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRF-FYASSACIYPEFKQLETNVSLK---ESDAWP-AEPQDAY 167 (370)
T ss_pred ccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEE-EEeCchhhcCCccccCcCCCcC---cccCCC-CCCCCHH
Confidence 86432111 12233567899999999999888765543 4343321 0000 000 000 01 3345566
Q ss_pred eeccccHHHHHHHHHHHcCCCCCCCce-EEEeecC
Q 018314 172 GVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHA 205 (358)
Q Consensus 172 G~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg 205 (358)
|.+.....++-...++..+++..-++. .++|.++
T Consensus 168 g~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~ 202 (370)
T PLN02695 168 GLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFG 202 (370)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence 665444555544456667776555553 4777654
No 112
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.41 E-value=0.0023 Score=66.51 Aligned_cols=115 Identities=19% Similarity=0.162 Sum_probs=71.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhc-----CC--CCccEEEEe----cCCcccccc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-----IN--TRSEVAGYM----GNDQLGQAL 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~-----~~--~~~~v~~~~----~~~d~~~al 94 (358)
.+.|.|+||+|++|..++..|+..+. +|++++++... ....++.+ .. ...++.... ..+++.+++
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 45799999999999999999998887 89999887522 22222211 01 001222221 112444578
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
.++|+||+++|........-...+..|......+++.+.+.+-. .||+++
T Consensus 158 ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS 207 (576)
T PLN03209 158 GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT 207 (576)
T ss_pred cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence 99999999998654321122234556777788888888776543 445444
No 113
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.39 E-value=0.0015 Score=59.30 Aligned_cols=98 Identities=21% Similarity=0.328 Sum_probs=60.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-----cHHH---------------HHHhhcCCCCccEEEEe--
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGV---------------AADVGHINTRSEVAGYM-- 85 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~~~---------------~~dl~~~~~~~~v~~~~-- 85 (358)
..||+|+|+ |.+|+.++..|+..|+ .+|+|+|.+. ...+ ...|.+.....++..+.
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGI-GKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence 458999998 9999999999999985 5899999982 1111 01111111223344321
Q ss_pred -cCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Q 018314 86 -GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142 (358)
Q Consensus 86 -~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~ii 142 (358)
..+++.+.++++|+||.+. +|.+.-..+.+.+.+..+..+++
T Consensus 99 i~~~~~~~~~~~~DlVi~a~---------------Dn~~~k~~l~~~~~~~~~~~~ii 141 (200)
T TIGR02354 99 ITEENIDKFFKDADIVCEAF---------------DNAEAKAMLVNAVLEKYKDKYLI 141 (200)
T ss_pred CCHhHHHHHhcCCCEEEECC---------------CCHHHHHHHHHHHHHHcCCCcEE
Confidence 1123345688999999884 45555556666666655544444
No 114
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.39 E-value=0.0018 Score=65.12 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=67.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC----------------CccEEEEecCCccc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLG 91 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~----------------~~~v~~~~~~~d~~ 91 (358)
++||+|||. |.||..+|..|+..++ +|+.||+++..-.. +..... ...+.. ++
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~--- 71 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRA---TT--- 71 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceee---ec---
Confidence 579999997 9999999999999987 99999997632222 221110 012222 12
Q ss_pred cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEe-eCCCCcchHHH
Q 018314 92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMI-SNPVNSTVPIA 155 (358)
Q Consensus 92 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~-tNP~d~~t~~~ 155 (358)
.+++||+||++...|.+.+. ..+...+.+.++.|.++.+ +.++|.- |.|.+..-.+.
T Consensus 72 -~~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~ 130 (415)
T PRK11064 72 -TPEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMA 130 (415)
T ss_pred -ccccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHH
Confidence 24589999999887754321 1234444555556666553 4443332 55666554443
No 115
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=97.38 E-value=0.0031 Score=63.65 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=66.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC------------CccEEEEecCCcccccc
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT------------RSEVAGYMGNDQLGQAL 94 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~------------~~~v~~~~~~~d~~~al 94 (358)
.+|||+|||- |.||..+|..|+.. + +|+.||+++. .+..|..... ..++.. +++ .+++
T Consensus 5 ~~mkI~vIGl-GyvGlpmA~~la~~-~--~V~g~D~~~~--~ve~l~~G~~~~~e~~~~~l~~~g~l~~---t~~-~~~~ 74 (425)
T PRK15182 5 DEVKIAIIGL-GYVGLPLAVEFGKS-R--QVVGFDVNKK--RILELKNGVDVNLETTEEELREARYLKF---TSE-IEKI 74 (425)
T ss_pred CCCeEEEECc-CcchHHHHHHHhcC-C--EEEEEeCCHH--HHHHHHCcCCCCCCCCHHHHHhhCCeeE---EeC-HHHH
Confidence 4589999997 99999999998874 5 9999999862 2333332221 012333 233 3578
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEE-EEeeCCCCcchHH
Q 018314 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIV-NMISNPVNSTVPI 154 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~i-iv~tNP~d~~t~~ 154 (358)
++||++|++.+.|.+.+.+ ....-+..-.+.|.++.+ +.++ +--|-|.+....+
T Consensus 75 ~~advvii~Vptp~~~~~~------~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~ 130 (425)
T PRK15182 75 KECNFYIITVPTPINTYKQ------PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEE 130 (425)
T ss_pred cCCCEEEEEcCCCCCCCCC------cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHH
Confidence 9999999999888644211 122233333344444433 3333 3346666655433
No 116
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=97.37 E-value=0.002 Score=62.64 Aligned_cols=175 Identities=15% Similarity=0.101 Sum_probs=95.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe----cCCccccccC--CCCEEEE
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALE--DSDVVII 102 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~--~aDiVIi 102 (358)
|||.|+||+|++|+.++..|...+. ..++.+|.....+....+.+.....++.... +.+++.++++ +.|+||+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 5899999999999999999988774 2466677543111111111111011222111 1123344554 4799999
Q ss_pred cCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhC-------CC-eEEEEeeCCCCcchHHH--HH--------HHHHh
Q 018314 103 PAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYC-------PN-AIVNMISNPVNSTVPIA--AE--------VFKKA 162 (358)
Q Consensus 103 ~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-a~iiv~tNP~d~~t~~~--~~--------~~~~s 162 (358)
+|+.... ......+.+..|+.....+.+.+.++. .. ..+|.+|-.. +..... .. ...+.
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~~~~~~~~E~ 158 (352)
T PRK10084 80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE-VYGDLPHPDEVENSEELPLFTET 158 (352)
T ss_pred CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh-hcCCCCccccccccccCCCcccc
Confidence 9986421 112235678899999999999888752 11 2344333221 110000 00 00111
Q ss_pred CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCc-eEEEeecC
Q 018314 163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA 205 (358)
Q Consensus 163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~hg 205 (358)
..+.|...+|.+.....++-..+++..+++.-.++ ..++|.+.
T Consensus 159 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~ 202 (352)
T PRK10084 159 TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYH 202 (352)
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCc
Confidence 11345567777765556666666777777655555 34778653
No 117
>PRK06194 hypothetical protein; Provisional
Probab=97.37 E-value=0.0031 Score=59.40 Aligned_cols=159 Identities=14% Similarity=0.143 Sum_probs=88.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccccC------
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------ 95 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------ 95 (358)
+++|.|+||+|++|+.++..|+..+. +|+++|.+. ......++.... .++..+. +-+| +.+.++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999886 899999865 223333333211 1333222 1122 222233
Q ss_pred -CCCEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHhhCCC-----eEEEEeeCCCCcchHHHHHHH
Q 018314 96 -DSDVVIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPN-----AIVNMISNPVNSTVPIAAEVF 159 (358)
Q Consensus 96 -~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~-----a~iiv~tNP~d~~t~~~~~~~ 159 (358)
..|+||..||..... ..+.. ..+..|+. ..+.+.+.+.+.+.+ +.+++++.....
T Consensus 82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~--------- 152 (287)
T PRK06194 82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL--------- 152 (287)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc---------
Confidence 469999999864321 12222 23444443 445555556655542 555655443321
Q ss_pred HHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314 160 KKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG 202 (358)
Q Consensus 160 ~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G 202 (358)
.+ .+..-.++.+......+...+++.++.....+++..+.
T Consensus 153 --~~-~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~ 192 (287)
T PRK06194 153 --LA-PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLC 192 (287)
T ss_pred --cC-CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 11 23333455543334455666677776655666655554
No 118
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=97.32 E-value=0.0052 Score=59.05 Aligned_cols=106 Identities=14% Similarity=0.093 Sum_probs=66.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcC-CCCccEEEEec----CCccccccCCCCEEE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHI-NTRSEVAGYMG----NDQLGQALEDSDVVI 101 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~-~~~~~v~~~~~----~~d~~~al~~aDiVI 101 (358)
.++|.|+||+|++|++++..|...+. +|+....+. .......+... ....+++...+ ..++.++++++|+||
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 46999999999999999999998887 777554443 21222222111 11123333221 123446678999999
Q ss_pred EcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhh
Q 018314 102 IPAGVPRK-PGMTRDDLFNINAGIVKDLCSAIAKY 135 (358)
Q Consensus 102 i~ag~~~~-~g~~r~~~~~~N~~i~~~i~~~i~~~ 135 (358)
++|+.... ......+++..|+.....+.+.+++.
T Consensus 83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 117 (322)
T PLN02986 83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKET 117 (322)
T ss_pred EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence 99985321 11222345677888888888887765
No 119
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=97.29 E-value=0.0041 Score=60.70 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=90.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH--HHHHhhcCCCCccEEEEec----CCccccccCCCCEE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV 100 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~--~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiV 100 (358)
..+||.|+||+|++|++++..|...+. +|++.+.+.... ...++.. ..+++.... ..++.+++++.|+|
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 457999999999999999999998886 888887654211 1112211 123333221 12234567889999
Q ss_pred EEcCCCCCCC---C-CCHH-----HHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcch--------HHHHHH----H
Q 018314 101 IIPAGVPRKP---G-MTRD-----DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV--------PIAAEV----F 159 (358)
Q Consensus 101 Ii~ag~~~~~---g-~~r~-----~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t--------~~~~~~----~ 159 (358)
|++|+..... . .+-. ..+..|+.....+.+.+.++..-..+|.+|.-.-... ....+- .
T Consensus 84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~ 163 (353)
T PLN02896 84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI 163 (353)
T ss_pred EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence 9999864211 1 1112 2333445667777777776532224454443110000 000000 0
Q ss_pred HHh-CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCc-eEEEeec
Q 018314 160 KKA-GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH 204 (358)
Q Consensus 160 ~~s-g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h 204 (358)
... ...++...+|.+.+...++...+++..+++..-++ ..++|.+
T Consensus 164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~ 210 (353)
T PLN02896 164 DHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF 210 (353)
T ss_pred HHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCC
Confidence 000 00112235666655555665666777676554444 3466754
No 120
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.28 E-value=0.0018 Score=62.79 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhCCCCcEEEEEecCCc--H--------HH--HHH----hhcCC---------CCccEEEEecCCcccccc
Q 018314 40 IGQPLALLMKLNPLVSRLALYDIANT--P--------GV--AAD----VGHIN---------TRSEVAGYMGNDQLGQAL 94 (358)
Q Consensus 40 vG~~~a~~l~~~~~~~ei~L~D~~~~--~--------~~--~~d----l~~~~---------~~~~v~~~~~~~d~~~al 94 (358)
||..+|..++..|+ +|+|||+++. . +. ..+ +.... ...+++..+ +.|+++++
T Consensus 1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~ 77 (314)
T PRK08269 1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL 77 (314)
T ss_pred CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence 57889999999998 9999999861 1 11 001 11000 123666542 22456789
Q ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314 95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~ 173 (358)
++||+||.+. .++.++.+++...+.+.+ |++++ .||...+...-++ ... -.|+|++|+
T Consensus 78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la---~~~--~~p~r~~g~ 136 (314)
T PRK08269 78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQ---RHV--AHPERFLNA 136 (314)
T ss_pred ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHH---hhc--CCcccEEEE
Confidence 9999999986 588999999999999998 45533 8888876543332 222 246788887
Q ss_pred cc
Q 018314 174 TT 175 (358)
Q Consensus 174 t~ 175 (358)
..
T Consensus 137 Hf 138 (314)
T PRK08269 137 HW 138 (314)
T ss_pred ec
Confidence 53
No 121
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=97.27 E-value=0.0026 Score=61.31 Aligned_cols=113 Identities=19% Similarity=0.112 Sum_probs=69.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccccC--CCCEE
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE--DSDVV 100 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~--~aDiV 100 (358)
|||.|+||+|++|++++..|+..+. +|+++|... .......+.+.. ..++.... +-.| +.++++ ++|+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALLTEILHDHAIDTV 77 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhc-CCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence 6899999999999999999998886 899888643 111111122111 01111111 1122 223344 68999
Q ss_pred EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 101 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
|++|+..... .....+.+..|+.....+.+.+++.... .++.+|
T Consensus 78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 123 (338)
T PRK10675 78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS 123 (338)
T ss_pred EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence 9998764321 1234567889999999999988877533 344443
No 122
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=97.26 E-value=0.0016 Score=61.01 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=67.2
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCCCC
Q 018314 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKP 110 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~~ 110 (358)
|.|+||+|++|++++..|...+. +|+.++++...... +... .+....+ .+..++++++|+||++|+.+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~ 71 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD 71 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence 57999999999999999998886 89999986521100 0000 0111111 12346789999999999875432
Q ss_pred C-C---CHHHHHHHHHHHHHHHHHHHHhhCCC
Q 018314 111 G-M---TRDDLFNINAGIVKDLCSAIAKYCPN 138 (358)
Q Consensus 111 g-~---~r~~~~~~N~~i~~~i~~~i~~~~p~ 138 (358)
+ . ...++...|+...+.+.+.+++....
T Consensus 72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 2 1 23456678999999999999988643
No 123
>PLN02572 UDP-sulfoquinovose synthase
Probab=97.24 E-value=0.0034 Score=63.66 Aligned_cols=177 Identities=16% Similarity=0.177 Sum_probs=98.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--c-HH------------HHHHh---hcCCCCccEEEEec-
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PG------------VAADV---GHINTRSEVAGYMG- 86 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~-~~------------~~~dl---~~~~~~~~v~~~~~- 86 (358)
-+++||.|+||+|++|++++..|+..+. +|+++|... . .. ....+ .+.. ..+++...+
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~D 121 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGD 121 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECC
Confidence 3457899999999999999999999886 899988421 0 00 00011 0000 012222211
Q ss_pred ---CCccccccC--CCCEEEEcCCCCCCC-C-CCH---HHHHHHHHHHHHHHHHHHHhhCCCeEEEEee------CCCCc
Q 018314 87 ---NDQLGQALE--DSDVVIIPAGVPRKP-G-MTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMIS------NPVNS 150 (358)
Q Consensus 87 ---~~d~~~al~--~aDiVIi~ag~~~~~-g-~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t------NP~d~ 150 (358)
..++.++++ +.|+||++|+....+ . .+. ...+..|+.....+.+.+++++....++.++ +|...
T Consensus 122 l~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~ 201 (442)
T PLN02572 122 ICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNID 201 (442)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCC
Confidence 122334455 479999998653211 1 111 2345679999999999999887654444332 22111
Q ss_pred chHH-HHH--HH-HHh-C-CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCc-eEEEeecC
Q 018314 151 TVPI-AAE--VF-KKA-G-TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA 205 (358)
Q Consensus 151 ~t~~-~~~--~~-~~s-g-~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~hg 205 (358)
+..- +.+ .. ..+ + ...|...+|.+.+....+....++..|++.--++ ..++|.+.
T Consensus 202 ~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~ 263 (442)
T PLN02572 202 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT 263 (442)
T ss_pred CcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence 1000 000 00 000 0 0234567888765555666667777787766565 45778653
No 124
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.21 E-value=0.0023 Score=61.49 Aligned_cols=95 Identities=20% Similarity=0.227 Sum_probs=59.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~ 108 (358)
|||+|||. |.+|.+++..|...++ +|.+||+++.. ...+..... .......++.+.++++|+|+++. |.
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~----~~~~s~~~~~~~~~~~dvIi~~v--p~ 69 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRT----TGVANLRELSQRLSAPRVVWVMV--PH 69 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCC----cccCCHHHHHhhcCCCCEEEEEc--Cc
Confidence 58999997 9999999999999887 89999987532 222322111 11111123334567899999984 11
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCC
Q 018314 109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV 148 (358)
Q Consensus 109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~ 148 (358)
- .++++++.+.... ++.++|..+|..
T Consensus 70 -------------~-~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 70 -------------G-IVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred -------------h-HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 1 3444444555544 566777777764
No 125
>PLN02583 cinnamoyl-CoA reductase
Probab=97.20 E-value=0.009 Score=57.01 Aligned_cols=105 Identities=11% Similarity=0.068 Sum_probs=68.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH----HHHHHhhcCCCCccEEEEe----cCCccccccCCCCE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVAADVGHINTRSEVAGYM----GNDQLGQALEDSDV 99 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~----~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDi 99 (358)
.++|.|+||+|++|++++..|...++ +|++.+.+... ....++.... .+++... +.+++.+++.++|.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~~~~~l~~~d~ 81 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCEE--ERLKVFDVDPLDYHSILDALKGCSG 81 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccCC--CceEEEEecCCCHHHHHHHHcCCCE
Confidence 45899999999999999999999887 88888764311 1112221111 1233221 11334568899999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 018314 100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136 (358)
Q Consensus 100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~ 136 (358)
|+..++.+........+.+..|+.-...+.+.+.+..
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~ 118 (297)
T PLN02583 82 LFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTD 118 (297)
T ss_pred EEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9887654332211234678889999999999887763
No 126
>PRK07680 late competence protein ComER; Validated
Probab=97.19 E-value=0.0028 Score=60.00 Aligned_cols=97 Identities=14% Similarity=0.190 Sum_probs=61.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~ 106 (358)
|||+|||+ |.+|..++..|...+. ..+|.++|++... ...+.+.. ..+... .+..+.+.++|+||++.-
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~~--~g~~~~---~~~~~~~~~aDiVilav~- 71 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKERY--PGIHVA---KTIEEVISQSDLIFICVK- 71 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHHc--CCeEEE---CCHHHHHHhCCEEEEecC-
Confidence 58999997 9999999999888773 2479999986522 12222211 123332 234566899999999861
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCC
Q 018314 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN 149 (358)
Q Consensus 107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d 149 (358)
-..+.++.+.+..+ .++.+++.++|++.
T Consensus 72 ---------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 72 ---------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 11133344444444 35678888888774
No 127
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.19 E-value=0.003 Score=62.67 Aligned_cols=75 Identities=25% Similarity=0.252 Sum_probs=50.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEcCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
|+||.|||| |+||+.++..|++++. .+|++-|+.. ....+.+..+... ...+... +...+.+.+++.|+||.++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAA-DVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEeccc-ChHHHHHHHhcCCEEEEeCC
Confidence 579999998 9999999999999885 6999999874 2223322221111 0112211 12345688999999999874
No 128
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.19 E-value=0.0029 Score=60.95 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=47.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
.+||+|||+ |.+|..++..|...+...+|.+||+++. ...+.+ ... .... ..++.+++++||+||++.
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~---~g~--~~~~---~~~~~~~~~~aDvViiav 74 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARARE---LGL--GDRV---TTSAAEAVKGADLVILCV 74 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh---CCC--Ccee---cCCHHHHhcCCCEEEECC
Confidence 368999997 9999999999998876558999998752 122221 111 1111 123456789999999986
No 129
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.17 E-value=0.0049 Score=61.48 Aligned_cols=117 Identities=18% Similarity=0.108 Sum_probs=71.0
Q ss_pred ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH----HHHHhhcCCCCccEEEEe----cCCcccc
Q 018314 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRSEVAGYM----GNDQLGQ 92 (358)
Q Consensus 21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~----~~~dl~~~~~~~~v~~~~----~~~d~~~ 92 (358)
|.+...+.+||.|+||+|.+|+.++..|...+. +|++++.+.... ...++.... ..++... +.+++.+
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~ 128 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKEL--PGAEVVFGDVTDADSLRK 128 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhc--CCceEEEeeCCCHHHHHH
Confidence 555566788999999999999999999998887 899998764210 011111111 1122211 1123444
Q ss_pred ccC----CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 93 ALE----DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 93 al~----~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
+++ ++|+||.+++.+.... .+....|......+.+.+++.+-. .++.+|
T Consensus 129 ~~~~~~~~~D~Vi~~aa~~~~~~---~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS 181 (390)
T PLN02657 129 VLFSEGDPVDVVVSCLASRTGGV---KDSWKIDYQATKNSLDAGREVGAK-HFVLLS 181 (390)
T ss_pred HHHHhCCCCcEEEECCccCCCCC---ccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 555 5899999876432111 123456777777888888776543 344444
No 130
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.0025 Score=60.35 Aligned_cols=166 Identities=16% Similarity=0.106 Sum_probs=95.0
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC-CccEEEEecCCccccccCCC-CEEEEcCCCC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDS-DVVIIPAGVP 107 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~a-DiVIi~ag~~ 107 (358)
+|.|+||+|++|++++..|...++ +|+.+|.........+ .+... ...+.- .....+.+++. |.||++|+..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~~d~~~---~~~~~~~~~~~~d~vih~aa~~ 75 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEFVVLDLTD---RDLVDELAKGVPDAVIHLAAQS 75 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccceeeecccc---hHHHHHHHhcCCCEEEEccccC
Confidence 499999999999999999999887 9999997552111111 11110 001110 01223455666 9999999876
Q ss_pred CCCCCCH---HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcch-H----HHHHHHHHhCCCCCCceEeeccccHH
Q 018314 108 RKPGMTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV-P----IAAEVFKKAGTYNEKKLFGVTTLDVV 179 (358)
Q Consensus 108 ~~~g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t-~----~~~~~~~~sg~~~~~kviG~t~lds~ 179 (358)
..++..+ .++...|+...+.+.+..++.. -..++. +......- . .+.+-. .. ..|...+|.+.+...
T Consensus 76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~~~~v~-~ss~~~~~~~~~~~~~~E~~--~~-~~p~~~Yg~sK~~~E 150 (314)
T COG0451 76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAG-VKRFVF-ASSVSVVYGDPPPLPIDEDL--GP-PRPLNPYGVSKLAAE 150 (314)
T ss_pred chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEE-eCCCceECCCCCCCCccccc--CC-CCCCCHHHHHHHHHH
Confidence 5444332 3588999999999999999832 223333 33322111 0 010000 11 222224566655455
Q ss_pred HHHHHHHHHcCCCCCCCce-EEEeecCC
Q 018314 180 RAKTFYAGKANVNVAEVNV-PVVGGHAG 206 (358)
Q Consensus 180 R~~~~la~~l~v~~~~v~~-~v~G~hg~ 206 (358)
+.-...++..+++..-++. .++|.+..
T Consensus 151 ~~~~~~~~~~~~~~~ilR~~~vyGp~~~ 178 (314)
T COG0451 151 QLLRAYARLYGLPVVILRPFNVYGPGDK 178 (314)
T ss_pred HHHHHHHHHhCCCeEEEeeeeeeCCCCC
Confidence 5545555555677766764 57776543
No 131
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.17 E-value=0.0023 Score=60.08 Aligned_cols=96 Identities=15% Similarity=0.233 Sum_probs=59.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~ 106 (358)
++||+|||+ |.+|..++..+...+. ..++.++|.++.. ...+.+.. .+... .+..+.+.++|+||++.-
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~~---~~~~~~~~~advVil~v~- 71 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRAA---TDNQEAAQEADVVVLAVK- 71 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCeec---CChHHHHhcCCEEEEEcC-
Confidence 578999998 9999999998887762 2478999987522 12222211 12221 233566789999999851
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (358)
Q Consensus 107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d 149 (358)
-..++++.+.+..+. +..++.++|-..
T Consensus 72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 122344444444443 456777777653
No 132
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=97.13 E-value=0.0066 Score=64.68 Aligned_cols=178 Identities=13% Similarity=0.014 Sum_probs=93.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-CCc---ccccc--CCCCEE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQAL--EDSDVV 100 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~al--~~aDiV 100 (358)
+++||.|+||+|++|++++..|...+...+|+.+|..........+.......+++...+ -.| +...+ .++|+|
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V 84 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI 84 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence 457999999999999999999988754448999987431111111111100113333221 112 11122 689999
Q ss_pred EEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHH-H--HHHhCCCCCCceEeecc
Q 018314 101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE-V--FKKAGTYNEKKLFGVTT 175 (358)
Q Consensus 101 Ii~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~-~--~~~sg~~~~~kviG~t~ 175 (358)
|++|+...... ....++...|+.-...+.+.+++.+.-..+|.+|.- .+....... . ........|...+|.+.
T Consensus 85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~-~vyg~~~~~~~~~~~E~~~~~p~~~Y~~sK 163 (668)
T PLN02260 85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTD-EVYGETDEDADVGNHEASQLLPTNPYSATK 163 (668)
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcch-HHhCCCccccccCccccCCCCCCCCcHHHH
Confidence 99998643211 123456788999999999998887632345544431 000000000 0 00000022334455554
Q ss_pred ccHHHHHHHHHHHcCCCCCCCc-eEEEeecC
Q 018314 176 LDVVRAKTFYAGKANVNVAEVN-VPVVGGHA 205 (358)
Q Consensus 176 lds~R~~~~la~~l~v~~~~v~-~~v~G~hg 205 (358)
+...++-...++..+++..-++ ..++|.+.
T Consensus 164 ~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~ 194 (668)
T PLN02260 164 AGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ 194 (668)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence 4444444445555666554444 34667553
No 133
>PLN02240 UDP-glucose 4-epimerase
Probab=97.13 E-value=0.0077 Score=58.39 Aligned_cols=116 Identities=19% Similarity=0.155 Sum_probs=70.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC--CCccEEEEe-c---CCccccccC--C
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN--TRSEVAGYM-G---NDQLGQALE--D 96 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~--~~~~v~~~~-~---~~d~~~al~--~ 96 (358)
.++||.|+||+|++|++++..|...+. +|+++|... .......+.+.. ...+++... + ..++.++++ +
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence 346999999999999999999998886 899998643 111111121110 011222221 1 122223333 6
Q ss_pred CCEEEEcCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 97 SDVVIIPAGVPRK-PG-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 97 aDiVIi~ag~~~~-~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
.|+||++|+.... .. ......+..|+.....+++.+++..... ++.+|
T Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S 131 (352)
T PLN02240 82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK-LVFSS 131 (352)
T ss_pred CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence 8999999986421 11 2345678899999999999888765443 44444
No 134
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=97.12 E-value=0.0033 Score=58.20 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=51.6
Q ss_pred CCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH--H
Q 018314 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE--K 322 (358)
Q Consensus 249 g~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~--~ 322 (358)
++..++ ..++.+|.++.+ .++.+++ ++|.+ |+|.++++||+|+++|++++.. ++|++...++++ +
T Consensus 134 ~~~~~a-----~~~i~~i~~~~~---~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~-g~lP~~~~~li~~~~ 204 (232)
T PF11975_consen 134 GSGEYA-----EAAIEAIYNDKP---KRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAV-GPLPPAIAGLIQQVK 204 (232)
T ss_dssp TTSCHH-----HHHHHHHHHSSE---EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-S-B---HHHHHHHHHHH
T ss_pred cccchH-----HHHHHHHhcCCC---eEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccC-CCCCHHHHHHHHHHH
Confidence 455555 344555666643 3555554 46654 8899999999999999999654 499999999888 8
Q ss_pred HHHHHHHHhhhh
Q 018314 323 LNPTFHIRKLFQ 334 (358)
Q Consensus 323 s~~~L~~~~~~~ 334 (358)
+++.|.+++...
T Consensus 205 ~~e~L~veAa~~ 216 (232)
T PF11975_consen 205 AYERLTVEAALE 216 (232)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888776654
No 135
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.11 E-value=0.0021 Score=61.48 Aligned_cols=75 Identities=23% Similarity=0.371 Sum_probs=52.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc-
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP- 103 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~- 103 (358)
+..||.|+|| |.+|.++++.|+..+. .+|.++|++. ++..+.++.+... .+.... .+++.+.++++|+||.+
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~~--~~~~~~-~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARFP--AARATA-GSDLAAALAAADGLVHAT 200 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhCC--CeEEEe-ccchHhhhCCCCEEEECC
Confidence 3468999998 9999999999998874 5899999976 3445555544321 122221 23345578999999997
Q ss_pred -CCC
Q 018314 104 -AGV 106 (358)
Q Consensus 104 -ag~ 106 (358)
+|.
T Consensus 201 p~Gm 204 (284)
T PRK12549 201 PTGM 204 (284)
T ss_pred cCCC
Confidence 454
No 136
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.11 E-value=0.0046 Score=57.18 Aligned_cols=70 Identities=10% Similarity=0.194 Sum_probs=45.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+.+||+|||+ |.+|.+++..+...+. ..+++.++.+.. ....++.+.. .+..+ .|..+.++++|+||++.
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~~---~~~~~~~~~~DiViiav 74 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVSTT---TDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEEe---CChHHHHhcCCEEEEec
Confidence 3579999997 9999999998877652 345777876421 1122232211 12322 34567789999999985
No 137
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.09 E-value=0.0035 Score=64.05 Aligned_cols=98 Identities=15% Similarity=0.200 Sum_probs=61.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC--CCccEEEEecCCccccccC---CCCEEEE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALE---DSDVVII 102 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~---~aDiVIi 102 (358)
+.+|+|||. |.+|.++|..|+..++ +|.+||+++.. +.++.... ....+.. .+++.+.++ ++|+|++
T Consensus 1 ~~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEE
Confidence 358999997 9999999999999998 89999987522 22222210 0112333 244555554 5898888
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCC
Q 018314 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV 148 (358)
Q Consensus 103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~ 148 (358)
.. -+-+.++++.+.+..+ .|+.++|..+|-.
T Consensus 73 ~v---------------~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 73 LI---------------KAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred Ee---------------CChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 74 1123344444444443 4677888887754
No 138
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.09 E-value=0.0025 Score=60.50 Aligned_cols=64 Identities=23% Similarity=0.249 Sum_probs=44.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
|||+|||+ |.+|..++..|...++ +|..||.++. ...+.+. . .+... +++. +++++||+||++.
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~---g---~~~~~--~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIER---G---LVDEA--STDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHC---C---Ccccc--cCCH-hHhcCCCEEEEcC
Confidence 58999997 9999999999998886 8999998752 1222221 1 11111 1233 5689999999985
No 139
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.07 E-value=0.0032 Score=59.10 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=45.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEE-ecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~-D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
|||+|||. |.+|..++..|...++ ..+|+.+ |+++.. ...+.+.. +... .+..+++++||+||++.
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~g----~~~~---~~~~e~~~~aDvVil~v 69 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSLG----VKTA---ASNTEVVKSSDVIILAV 69 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHcC----CEEe---CChHHHHhcCCEEEEEE
Confidence 68999997 9999999999988774 4578888 765422 22233211 2222 23456788999999986
No 140
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=97.01 E-value=0.0071 Score=58.72 Aligned_cols=154 Identities=8% Similarity=-0.005 Sum_probs=86.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhc-C--CCCccEEEEe-cCC---ccccccCC--
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGH-I--NTRSEVAGYM-GND---QLGQALED-- 96 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~-~--~~~~~v~~~~-~~~---d~~~al~~-- 96 (358)
++|.|+||+|++|++++..|...+. +|+++|.+.. ......+.. . .....++... +-. ++.+++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 78 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK 78 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence 4899999999999999999998887 8999997642 111111110 0 0011222221 112 23345564
Q ss_pred CCEEEEcCCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHhhC-CC-eEEEEeeC------CCCc-chHHHHHHHHHhCCC
Q 018314 97 SDVVIIPAGVPRKP-G-MTRDDLFNINAGIVKDLCSAIAKYC-PN-AIVNMISN------PVNS-TVPIAAEVFKKAGTY 165 (358)
Q Consensus 97 aDiVIi~ag~~~~~-g-~~r~~~~~~N~~i~~~i~~~i~~~~-p~-a~iiv~tN------P~d~-~t~~~~~~~~~sg~~ 165 (358)
.|+||++|+..... . ......+..|+.-...+.+.+.+.+ .+ ..++.+|. +.+. .+ .... +
T Consensus 79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~-------E~~~-~ 150 (343)
T TIGR01472 79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQN-------ETTP-F 150 (343)
T ss_pred CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCC-------CCCC-C
Confidence 59999999864321 1 1123444567777788888888765 22 24443322 2111 11 1112 4
Q ss_pred CCCceEeeccccHHHHHHHHHHHcCCC
Q 018314 166 NEKKLFGVTTLDVVRAKTFYAGKANVN 192 (358)
Q Consensus 166 ~~~kviG~t~lds~R~~~~la~~l~v~ 192 (358)
.|...+|.+.....++...+++..+++
T Consensus 151 ~p~~~Y~~sK~~~e~~~~~~~~~~~~~ 177 (343)
T TIGR01472 151 YPRSPYAAAKLYAHWITVNYREAYGLF 177 (343)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHhCCc
Confidence 455666776555666666667766664
No 141
>PRK07201 short chain dehydrogenase; Provisional
Probab=96.98 E-value=0.012 Score=62.22 Aligned_cols=110 Identities=13% Similarity=0.062 Sum_probs=67.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC-Cc--------cccccCCCCE
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ--------LGQALEDSDV 99 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d--------~~~al~~aDi 99 (358)
|||.|+||+|++|++++..|.......+|+.++.+.......++.......+++...+. .| ..+.++++|+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~D~ 80 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDIDH 80 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCCCE
Confidence 58999999999999999999853223489999986522222222111000123332110 11 0123489999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCe
Q 018314 100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 139 (358)
Q Consensus 100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a 139 (358)
||++|+... ...+..+....|+.-.+.+.+.+++...+.
T Consensus 81 Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~ 119 (657)
T PRK07201 81 VVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQAAT 119 (657)
T ss_pred EEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcCCCe
Confidence 999998532 223445667789999999999888765333
No 142
>PLN02253 xanthoxin dehydrogenase
Probab=96.97 E-value=0.019 Score=53.83 Aligned_cols=153 Identities=15% Similarity=0.249 Sum_probs=82.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------ 94 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------ 94 (358)
+.+++.|+||+|.+|..++..|+..+. +|+++|.++. .....++.. ..++..+. +-.| ..+++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 456899999999999999999998886 8999998652 222223321 11222221 1122 22222
Q ss_pred -CCCCEEEEcCCCCCCC-----CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHH
Q 018314 95 -EDSDVVIIPAGVPRKP-----GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK 161 (358)
Q Consensus 95 -~~aDiVIi~ag~~~~~-----g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~ 161 (358)
...|++|..||..... ..+. ...+..|..- ++.+.+.+.+. ..+.+++++.....
T Consensus 92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~ii~isS~~~~----------- 159 (280)
T PLN02253 92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPL-KKGSIVSLCSVASA----------- 159 (280)
T ss_pred hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCceEEEecChhhc-----------
Confidence 3689999999864321 1222 2345555443 34444444432 34556656543321
Q ss_pred hCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceE
Q 018314 162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVP 199 (358)
Q Consensus 162 sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~ 199 (358)
.+ .+....+|.+......+-+.+++.++ +..+++.
T Consensus 160 ~~-~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~ 194 (280)
T PLN02253 160 IG-GLGPHAYTGSKHAVLGLTRSVAAELG--KHGIRVN 194 (280)
T ss_pred cc-CCCCcccHHHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence 11 22223455543334456667777764 3345443
No 143
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.96 E-value=0.0043 Score=61.20 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=45.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+||+|||+ |.||.+++..|...++ ++.++|.+.............. +.. .++++.+++++||+||++.
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~---~~~--~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGV---IDE--LAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCC---Ccc--cccCHHHHhcCCCEEEEeC
Confidence 37999997 9999999999999887 7788888763222111111111 111 1245567889999999986
No 144
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.96 E-value=0.0014 Score=54.24 Aligned_cols=72 Identities=24% Similarity=0.304 Sum_probs=46.8
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc--CCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH--INTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~--~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
||+|+||+|.+|..++..|...+.+.-+.+++.....++...-.+ ......+.... .+ .+.+.++|+||.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--AD-PEELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TS-GHHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cc-hhHhhcCCEEEecC
Confidence 799999999999999999999887767777777652332221111 11112333321 23 35689999999985
No 145
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=96.95 E-value=0.0038 Score=59.66 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=64.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC--CCCEEEEcCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV 106 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVIi~ag~ 106 (358)
|||.|+||+|++|++++..|...+ +++.+|.... ....|+.+ ...+.+.++ +.|+||++|+.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d------------~~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSN------------PEGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence 589999999999999999888776 4777776421 00011111 112334455 58999999875
Q ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 107 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
.... ..........|+.....+++..++.+. .++.+|
T Consensus 65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~S 103 (299)
T PRK09987 65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYS 103 (299)
T ss_pred CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence 3211 122344457899999999999988753 444433
No 146
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.94 E-value=0.015 Score=54.86 Aligned_cols=120 Identities=16% Similarity=0.178 Sum_probs=76.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe----cCCccc-------c
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM----GNDQLG-------Q 92 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~----~~~d~~-------~ 92 (358)
.+++.+.|+||++++|..+|..|+.++. .|+|+.+++ +...+.++.+... ..+.... ..++++ +
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~~-v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKTG-VEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhhC-ceEEEEECcCCChhHHHHHHHHHHh
Confidence 3456899999999999999999999998 999999987 5666777775431 1222211 111111 1
Q ss_pred ccCCCCEEEEcCCCCCC-----CC-CCHHHHHHHHHHHHHH----HHHHHHhhCCCeEEEEeeCCCC
Q 018314 93 ALEDSDVVIIPAGVPRK-----PG-MTRDDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNPVN 149 (358)
Q Consensus 93 al~~aDiVIi~ag~~~~-----~g-~~r~~~~~~N~~i~~~----i~~~i~~~~p~a~iiv~tNP~d 149 (358)
..-..|+.|..||...- .. .+-.+++.-|+--... +.+.|.+.. .+.||+++.-..
T Consensus 81 ~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S~ag 146 (265)
T COG0300 81 RGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGSAAG 146 (265)
T ss_pred cCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEechhh
Confidence 22368999999986431 12 2235677777655544 445555433 456777765543
No 147
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.94 E-value=0.0032 Score=53.31 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=51.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+..++.|+|| |.+|..++..|...+. .+|.+++++.. ...+..+ ....++... .+++.+.+.++|+||.+.
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~-~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEALAEEF----GGVNIEAIP-LEDLEEALQEADIVINAT 83 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHH----TGCSEEEEE-GGGHCHHHHTESEEEE-S
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHc----Cccccceee-HHHHHHHHhhCCeEEEec
Confidence 4569999998 9999999999999874 57999998652 2333333 112344432 356667889999999986
Q ss_pred CCC
Q 018314 105 GVP 107 (358)
Q Consensus 105 g~~ 107 (358)
+.+
T Consensus 84 ~~~ 86 (135)
T PF01488_consen 84 PSG 86 (135)
T ss_dssp STT
T ss_pred CCC
Confidence 554
No 148
>PRK08655 prephenate dehydrogenase; Provisional
Probab=96.93 E-value=0.0051 Score=62.38 Aligned_cols=64 Identities=25% Similarity=0.398 Sum_probs=46.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
|||+||||.|.+|..++..|...+. +|.++|.++.. ..+.++ .+.. ++++.+++.+||+||++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~~~a~~~-------gv~~---~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGKEVAKEL-------GVEY---ANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHc-------CCee---ccCHHHHhccCCEEEEec
Confidence 5899998559999999999998886 89999987522 122211 1222 234567789999999985
No 149
>PRK08643 acetoin reductase; Validated
Probab=96.90 E-value=0.051 Score=50.04 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=66.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccc-------ccC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------ALE 95 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al~ 95 (358)
+++.|+||+|++|..++..|+..+. +|++.|.+.. .....++.+.. .++..+. +-+| +.+ .+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999998886 8999998652 22233343221 1222211 1111 111 124
Q ss_pred CCCEEEEcCCCCC-CC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314 96 DSDVVIIPAGVPR-KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV 148 (358)
Q Consensus 96 ~aDiVIi~ag~~~-~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~ 148 (358)
+.|+||+++|... .+ ..+. ...+..|+. +.+.+.+.+.+..+++.+++++...
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~ 141 (256)
T PRK08643 79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQA 141 (256)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccc
Confidence 6899999998642 22 1111 223445543 3445555555544556777666543
No 150
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.90 E-value=0.0053 Score=60.04 Aligned_cols=98 Identities=23% Similarity=0.322 Sum_probs=64.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+.++|.|+||+|.+|+.++..|....-..+|++++.++ ....+.++.+. .+ .++.+++.++|+||.++
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~----~i------~~l~~~l~~aDiVv~~t 223 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG----KI------LSLEEALPEADIVVWVA 223 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc----cH------HhHHHHHccCCEEEECC
Confidence 34589999998999999999997643245899999764 22222222211 11 23567899999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcch
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV 152 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t 152 (358)
+.+...-.+..++ .+..+++=++.|=|+-.
T Consensus 224 s~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 224 SMPKGVEIDPETL------------------KKPCLMIDGGYPKNLDT 253 (340)
T ss_pred cCCcCCcCCHHHh------------------CCCeEEEEecCCCCCCc
Confidence 8765321222111 35567777888877654
No 151
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=96.90 E-value=0.004 Score=61.84 Aligned_cols=60 Identities=20% Similarity=0.415 Sum_probs=46.0
Q ss_pred ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEE
Q 018314 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV 100 (358)
Q Consensus 21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV 100 (358)
|-+.....+||+|||+.|.+|..++..|...++ +|.+||.+.. ++..+++++||+|
T Consensus 91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlV 146 (374)
T PRK11199 91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMV 146 (374)
T ss_pred ccccCcccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEE
Confidence 433344567999999559999999999999887 8999997421 1124568899999
Q ss_pred EEcC
Q 018314 101 IIPA 104 (358)
Q Consensus 101 Ii~a 104 (358)
|++.
T Consensus 147 ilav 150 (374)
T PRK11199 147 IVSV 150 (374)
T ss_pred EEeC
Confidence 9986
No 152
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=96.90 E-value=0.0027 Score=53.35 Aligned_cols=103 Identities=19% Similarity=0.273 Sum_probs=56.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+...+||+|||| |.||.+++..|...++ +|.-+-.+. ..-+.++.+... .... .++.+.+.+||+++++.
T Consensus 7 ~~~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~~--~~~~----~~~~~~~~~aDlv~iav 76 (127)
T PF10727_consen 7 QAARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFIG--AGAI----LDLEEILRDADLVFIAV 76 (127)
T ss_dssp -----EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC--T--T---------TTGGGCC-SEEEE-S
T ss_pred CCCccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-cccccccccccc--cccc----cccccccccCCEEEEEe
Confidence 446789999998 9999999999999887 665554332 222233333221 2222 23457789999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh--C-CCeEEEEe---eCCCCcchHH
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKY--C-PNAIVNMI---SNPVNSTVPI 154 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~-p~a~iiv~---tNP~d~~t~~ 154 (358)
. + ..+.++++.|..+ . |+. +++= +-+++++.++
T Consensus 77 p-----D-----------daI~~va~~La~~~~~~~g~-iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 77 P-----D-----------DAIAEVAEQLAQYGAWRPGQ-IVVHTSGALGSDVLAPA 115 (127)
T ss_dssp ------C-----------CHHHHHHHHHHCC--S-TT--EEEES-SS--GGGGHHH
T ss_pred c-----h-----------HHHHHHHHHHHHhccCCCCc-EEEECCCCChHHhhhhH
Confidence 1 1 1456777788776 2 444 4433 4456667653
No 153
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.89 E-value=0.0088 Score=56.83 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=61.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
|+||+|||+ |.+|.+++..|...+. ..+|+++|.+... ....+.... ..+... .|..+.++++|+||++.-
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~~--~~~~~~---~~~~e~~~~aDvVilavp 73 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDKY--PTVELA---DNEAEIFTKCDHSFICVP 73 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHHc--CCeEEe---CCHHHHHhhCCEEEEecC
Confidence 468999997 9999999999888762 2489999986421 122222111 122322 334567899999998852
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS 150 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~ 150 (358)
...++++++.+..+- ++..+|.+.|-+++
T Consensus 74 ----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~ 103 (277)
T PRK06928 74 ----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVSL 103 (277)
T ss_pred ----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 123445555555443 45566666666543
No 154
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.88 E-value=0.0093 Score=52.78 Aligned_cols=33 Identities=36% Similarity=0.633 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
||.|+|+ |.+|+.++..|+..+. .+++|+|.+.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 6899998 9999999999999885 5899999874
No 155
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.85 E-value=0.0064 Score=55.10 Aligned_cols=36 Identities=28% Similarity=0.533 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+..||.|+|+ |.+|+.++..|+..|. .+|.|+|.+.
T Consensus 20 ~~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence 3458999998 9999999999999985 6999999873
No 156
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=96.84 E-value=0.0061 Score=57.30 Aligned_cols=95 Identities=20% Similarity=0.244 Sum_probs=65.8
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCC--CEEEEcCCCC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS--DVVIIPAGVP 107 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a--DiVIi~ag~~ 107 (358)
||.|+||+|++|++++..|...+. +|+.++... .|+.+ .+++.++++++ |+||++++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~ 61 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT 61 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence 689999999999999999988886 888888641 12211 12234556655 9999999864
Q ss_pred CCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 108 RKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 108 ~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
... .......+..|......+++.+.+... .+|.+|
T Consensus 62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S 99 (287)
T TIGR01214 62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS 99 (287)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence 322 123455678889889999998887653 344444
No 157
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=96.83 E-value=0.0084 Score=57.15 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=62.4
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCc-cccc-----cCCCCEEEEcC
Q 018314 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ-LGQA-----LEDSDVVIIPA 104 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d-~~~a-----l~~aDiVIi~a 104 (358)
|.|+||+|++|++++..|...+. ..+.++|..........+.+... .+... ..+ +.+. +.++|+||++|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~-~d~~~---~~~~~~~~~~~~~~~~~d~Vih~A 76 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDI-ADYMD---KEDFLAQIMAGDDFGDIEAIFHEG 76 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhh-hhhhh---HHHHHHHHhcccccCCccEEEECc
Confidence 78999999999999999998874 35677786542111111111110 00000 011 1112 23799999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p 137 (358)
+.+..........+..|+.....+.+.+++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~ 109 (308)
T PRK11150 77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI 109 (308)
T ss_pred eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 754333334455678899999999999888653
No 158
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=96.83 E-value=0.01 Score=57.56 Aligned_cols=109 Identities=14% Similarity=0.034 Sum_probs=66.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcC--CCCccEEEEe-c---CCccccccCC-
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHI--NTRSEVAGYM-G---NDQLGQALED- 96 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~--~~~~~v~~~~-~---~~d~~~al~~- 96 (358)
+.++|.|+||+|++|++++..|+..+. +|+++|.++. ......+... ....+++... + ..++.+++++
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 82 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI 82 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence 356899999999999999999999887 8999887541 1111112110 0011222221 1 1223344554
Q ss_pred -CCEEEEcCCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHhhCC
Q 018314 97 -SDVVIIPAGVPRKP-G-MTRDDLFNINAGIVKDLCSAIAKYCP 137 (358)
Q Consensus 97 -aDiVIi~ag~~~~~-g-~~r~~~~~~N~~i~~~i~~~i~~~~p 137 (358)
.|+||++|+..... . ......+..|+.-...+.+.+.++..
T Consensus 83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~ 126 (340)
T PLN02653 83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ 126 (340)
T ss_pred CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence 59999999864321 1 12234456788888888888888764
No 159
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.83 E-value=0.0074 Score=55.68 Aligned_cols=114 Identities=19% Similarity=0.284 Sum_probs=66.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc---ccc-------c
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------L 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l 94 (358)
.+++.|+||+|.+|+.++..|+..+. +|++.+.++ ......++.+.. .++.... +-+|. .++ .
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999887 899999876 222233343322 1232221 11121 112 2
Q ss_pred CCCCEEEEcCCCCCC-C--CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEee
Q 018314 95 EDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~t 145 (358)
.+.|+||.++|.... + ..+ -.+.+..|..- .+.+.+.+.+..+.+.+++++
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s 143 (262)
T PRK13394 83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG 143 (262)
T ss_pred CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence 348999999986421 1 111 22344456554 666666663334445555554
No 160
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.82 E-value=0.0057 Score=58.37 Aligned_cols=64 Identities=22% Similarity=0.276 Sum_probs=46.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+||+|||. |.+|..++..+...++ +|..||+++.... .+.... +.. .+++.+.+++||+||++.
T Consensus 3 ~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~~--~~~~~g----~~~---~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 3 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAVA--EVIAAG----AET---ASTAKAVAEQCDVIITML 66 (296)
T ss_pred ceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Cee---cCCHHHHHhcCCEEEEeC
Confidence 58999997 9999999999998886 8999998752211 122111 122 234567789999999985
No 161
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.82 E-value=0.026 Score=52.09 Aligned_cols=116 Identities=18% Similarity=0.199 Sum_probs=66.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------c
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l 94 (358)
.++|.|+||+|++|..++..|+..+. +|++.|.++. .....++.+.. .++..+. +-+| +.+. +
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999998887 8999998752 22222333221 1222221 1111 1122 2
Q ss_pred CCCCEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHhhC---CCeEEEEeeCC
Q 018314 95 EDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNP 147 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~iiv~tNP 147 (358)
...|+||..+|.... + ..+ -.+.+..|+.-...+.+.+.++. ..+.++++|..
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~ 147 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV 147 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence 357999999986431 1 112 23345566654444444444332 34566666654
No 162
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=96.82 E-value=0.0039 Score=59.43 Aligned_cols=63 Identities=21% Similarity=0.319 Sum_probs=45.7
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
||+|||. |.+|..++..|+..++ +|..||++... ...+.+... .. .++..+++++||+||++.
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~----~~---~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAGA----VT---AETARQVTEQADVIFTMV 63 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCCC----cc---cCCHHHHHhcCCEEEEec
Confidence 6999997 9999999999998887 89999987522 222332221 11 124467889999999985
No 163
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.81 E-value=0.029 Score=51.27 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=64.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEec-CC---ccccc-------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-ND---QLGQA------- 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~---d~~~a------- 93 (358)
+.++|.|+||+|.+|..++..|+..+. +|++++.+.. .....++.+ . .++..+.. -. ++...
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA-G--GRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-C--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456999999999999999999998887 8999998762 222233332 1 12222211 11 11122
Q ss_pred cCCCCEEEEcCCCCCCC----CCC---HHHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314 94 LEDSDVVIIPAGVPRKP----GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 94 l~~aDiVIi~ag~~~~~----g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
+...|+||.++|..... ..+ -.+.+..|.. +.+.+.+.+.+... +.+++++.
T Consensus 79 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS 141 (251)
T PRK07231 79 FGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGG-GAIVNVAS 141 (251)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-cEEEEEcC
Confidence 23579999999863211 112 1234455554 44555555544333 34554544
No 164
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.81 E-value=0.0089 Score=57.06 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=48.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+||++||- |.||+.++..|...++ +++.||++..+. +..+..... . . ..++.++.++||+||...
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga--~--~---a~s~~eaa~~aDvVitmv 65 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGA--T--V---AASPAEAAAEADVVITML 65 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCC--c--c---cCCHHHHHHhCCEEEEec
Confidence 58999997 9999999999999998 999999876432 233333221 1 1 123468899999999985
No 165
>PRK08267 short chain dehydrogenase; Provisional
Probab=96.79 E-value=0.011 Score=54.73 Aligned_cols=112 Identities=29% Similarity=0.370 Sum_probs=63.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEe----cCCcccccc--------
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQAL-------- 94 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~al-------- 94 (358)
+++.|+||+|++|..++..|+..+. +|+++|.+... ....++.. .++..+. ...++.+.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGA----GNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999886 89999976521 11122221 1121111 111222222
Q ss_pred CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHH----HHhhCCCeEEEEeeCC
Q 018314 95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNP 147 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~iiv~tNP 147 (358)
...|+||.+||..... ..+ -...+..|..-...+.+. +++ .+.+.+++++..
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~isS~ 137 (260)
T PRK08267 76 GRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKA-TPGARVINTSSA 137 (260)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-CCCCEEEEeCch
Confidence 3459999999875321 112 234456666644444444 433 344556655554
No 166
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=96.79 E-value=0.008 Score=59.14 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=77.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEe----cCCccccccCCCCEEE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVI 101 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDiVI 101 (358)
++.++.|+||+|++|.+++..|..++...||.++|.... ...-.|.... ...+++... +..++..|+.++ .|+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv 80 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV 80 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence 456899999999999999999999886679999999762 1111111110 112333321 124567899999 666
Q ss_pred EcCCCC-CCCCC-CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314 102 IPAGVP-RKPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (358)
Q Consensus 102 i~ag~~-~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d 149 (358)
+.+..+ ....+ .|......|+.-.+.+.+.+.+.+-+- +++|....
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~--lIYtSs~~ 128 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKR--LIYTSSAY 128 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHhCCCE--EEEecCce
Confidence 654332 22233 466777899999999999999886432 44544443
No 167
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.78 E-value=0.028 Score=54.12 Aligned_cols=117 Identities=16% Similarity=0.110 Sum_probs=69.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHH--H--h--hcCCCCccEEEEecCCccccccCCCCEEE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA--D--V--GHINTRSEVAGYMGNDQLGQALEDSDVVI 101 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~--d--l--~~~~~~~~v~~~~~~~d~~~al~~aDiVI 101 (358)
.|||+|+|+ |.||..++..|...+. +|.|++..+.+-.+. + + .+......+.... .+ .+.....|+||
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~--~~-~~~~~~~D~vi 75 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPA--ET-ADAAEPIHRLL 75 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCC--CC-cccccccCEEE
Confidence 469999998 9999999999998876 899999853111111 0 1 0001000111111 11 12356889999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314 102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173 (358)
Q Consensus 102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~ 173 (358)
++... ..+. +..+.+..+ .+++.++.+-|=++....+. +. ++.+++++-
T Consensus 76 v~vK~------------~~~~----~al~~l~~~l~~~t~vv~lQNGv~~~e~l~----~~---~~~~~v~~g 125 (305)
T PRK05708 76 LACKA------------YDAE----PAVASLAHRLAPGAELLLLQNGLGSQDAVA----AR---VPHARCIFA 125 (305)
T ss_pred EECCH------------HhHH----HHHHHHHhhCCCCCEEEEEeCCCCCHHHHH----Hh---CCCCcEEEE
Confidence 98621 1122 333444444 37888888999988765442 22 666777765
No 168
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.77 E-value=0.014 Score=55.50 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=46.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCC--CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~--~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
.|||+|||+ |.+|.+++..|...+ ...+|+.+|++.. ....++.... .++.. .+..+.+++||+||++.
T Consensus 3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~~---~~~~e~~~~aDvVilav 73 (279)
T PRK07679 3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKGT---HNKKELLTDANILFLAM 73 (279)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceEe---CCHHHHHhcCCEEEEEe
Confidence 369999997 999999999998876 2348899987541 1222332211 12322 23456778999999985
No 169
>PRK06924 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.017 Score=53.03 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
++|.|+||+|.+|+.++..|+..+. +|++.+.++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 4799999999999999999999887 899999765
No 170
>PRK07069 short chain dehydrogenase; Validated
Probab=96.75 E-value=0.057 Score=49.39 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=67.5
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC-C--cHHHHHHhhcCCCCccEEEE-ecCCc---cc-------cccC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-N--TPGVAADVGHINTRSEVAGY-MGNDQ---LG-------QALE 95 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~-~--~~~~~~dl~~~~~~~~v~~~-~~~~d---~~-------~al~ 95 (358)
||.|+||+|.+|..++..|+..+. +|++.|.+ . ......++........+..+ .+-.| +. +.+.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG 78 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 589999999999999999998886 89999986 3 22223333322111111111 11112 11 1234
Q ss_pred CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314 96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV 148 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~ 148 (358)
..|+||..+|..... ..+. ...+..|+. ..+.+.+.+++... +.+++++...
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss~~ 140 (251)
T PRK07069 79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISSVA 140 (251)
T ss_pred CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecChh
Confidence 679999999864321 1122 234556665 67788888876543 4555555443
No 171
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.72 E-value=0.0031 Score=60.80 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=67.2
Q ss_pred chhhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCcc
Q 018314 3 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSE 80 (358)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~ 80 (358)
.+.+-.++|-|-.+.+.+++. + ....++|||+ |..|..-+..+.....+.+|.+||++. ....+.++.+.. ..+
T Consensus 94 ~~~lT~~RTaA~salaa~~l~-~-da~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~ 169 (301)
T PRK06407 94 ANRLGQIRTGAVTAYATSILH-K-NVENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVD 169 (301)
T ss_pred cchHHHHHHHHHHHHHHHHhh-c-CCcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCc
Confidence 345666777777777777665 3 5679999997 999887777666655678999999986 344455555421 234
Q ss_pred EEEEecCCccccccCCCCEEEEcC
Q 018314 81 VAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 81 v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+... ++.++++++||+|+.+-
T Consensus 170 v~~~---~~~~eav~~aDIV~taT 190 (301)
T PRK06407 170 IRPV---DNAEAALRDADTITSIT 190 (301)
T ss_pred EEEe---CCHHHHHhcCCEEEEec
Confidence 5543 45689999999999753
No 172
>PRK05876 short chain dehydrogenase; Provisional
Probab=96.71 E-value=0.031 Score=52.64 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=66.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------c
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l 94 (358)
.+.+.|+||+|++|..++..|+..+. +|++.|.++ ......++.... .++.... +-+| +.+. +
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 34699999999999999999999887 899999875 222233343221 1222221 1111 1112 2
Q ss_pred CCCCEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 95 EDSDVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
...|++|..||..... ..+.. ..+..|. .+.+.+.+.+.+....+.+++++.
T Consensus 82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS 143 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS 143 (275)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 3579999999864211 22222 2344554 444555555555543456666654
No 173
>PRK07102 short chain dehydrogenase; Provisional
Probab=96.71 E-value=0.023 Score=51.99 Aligned_cols=117 Identities=19% Similarity=0.096 Sum_probs=66.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---cccccc----CCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQAL----EDS 97 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al----~~a 97 (358)
|++|.|+||+|++|..++..|+..+. +|++.|+++. .....++.... ..++.... +-. ++.+.+ +..
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP 77 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence 45899999999999999999998886 8999998762 22223333211 12333321 111 222222 235
Q ss_pred CEEEEcCCCCCC---CCCCHH---HHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCC
Q 018314 98 DVVIIPAGVPRK---PGMTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP 147 (358)
Q Consensus 98 DiVIi~ag~~~~---~g~~r~---~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP 147 (358)
|+||.++|.... .+.+.. +.+..|..-...+.+.+.++ ...+.++++|-.
T Consensus 78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 136 (243)
T PRK07102 78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV 136 (243)
T ss_pred CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 999998875321 123333 34556665555555444433 224556666543
No 174
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.70 E-value=0.0052 Score=51.77 Aligned_cols=75 Identities=24% Similarity=0.396 Sum_probs=48.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---------------------HHHHHHhhcCCCCccEEEEec
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------------------PGVAADVGHINTRSEVAGYMG 86 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------------------~~~~~dl~~~~~~~~v~~~~~ 86 (358)
..||+|+|+ |.+|+.++..|+..|. .++.|+|.+.. +.....+.......+++.+..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~ 79 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE 79 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence 459999998 9999999999999886 69999998640 011112222222345555421
Q ss_pred C---CccccccCCCCEEEEcC
Q 018314 87 N---DQLGQALEDSDVVIIPA 104 (358)
Q Consensus 87 ~---~d~~~al~~aDiVIi~a 104 (358)
. .+..+.++++|+||.+.
T Consensus 80 ~~~~~~~~~~~~~~d~vi~~~ 100 (135)
T PF00899_consen 80 KIDEENIEELLKDYDIVIDCV 100 (135)
T ss_dssp HCSHHHHHHHHHTSSEEEEES
T ss_pred ccccccccccccCCCEEEEec
Confidence 1 22335678999998875
No 175
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=96.70 E-value=0.0063 Score=55.06 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=91.2
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEe----cCCccccccCCC--CEEEEc
Q 018314 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM----GNDQLGQALEDS--DVVIIP 103 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~a--DiVIi~ 103 (358)
|.|+||+|.+|+.++..|...+. +++-+.... ......... +++.+. +..++.+.+++. |.||.+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~------~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~ 72 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKL------NVEFVIGDLTDKEQLEKLLEKANIDVVIHL 72 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHT------TEEEEESETTSHHHHHHHHHHHTESEEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccc------eEEEEEeeccccccccccccccCceEEEEe
Confidence 78999999999999999999987 555444443 222222111 111111 112345667777 999999
Q ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHH
Q 018314 104 AGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181 (358)
Q Consensus 104 ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~ 181 (358)
|+.+. .....-.+....|+...+.+.+.+++.... .+|.++. ..+-........+....+.+...+|.+.....++
T Consensus 73 a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~sS-~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~ 150 (236)
T PF01370_consen 73 AAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVK-RFIFLSS-ASVYGDPDGEPIDEDSPINPLSPYGASKRAAEEL 150 (236)
T ss_dssp BSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTS-EEEEEEE-GGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHH
T ss_pred ecccccccccccccccccccccccccccccccccccc-ccccccc-cccccccccccccccccccccccccccccccccc
Confidence 98653 111345677889999999999999999873 4444433 2111000000000000011222344443334455
Q ss_pred HHHHHHHcCCCCCCCce-EEEeec
Q 018314 182 KTFYAGKANVNVAEVNV-PVVGGH 204 (358)
Q Consensus 182 ~~~la~~l~v~~~~v~~-~v~G~h 204 (358)
...+++..+++...++. .++|.+
T Consensus 151 ~~~~~~~~~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 151 LRDYAKKYGLRVTILRPPNVYGPG 174 (236)
T ss_dssp HHHHHHHHTSEEEEEEESEEESTT
T ss_pred cccccccccccccccccccccccc
Confidence 55566666776666664 466665
No 176
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.70 E-value=0.0021 Score=62.23 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=59.5
Q ss_pred hhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEE
Q 018314 5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82 (358)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~ 82 (358)
.|-.++|-|-.+.+.++++.+ ....++|||+ |..+..-+..+...-.+.+|.+||++. .+..+.++.+ . ...+.
T Consensus 106 ~lT~~RTaA~sala~~~La~~-~~~~l~viGa-G~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~ 181 (313)
T PF02423_consen 106 WLTALRTAAVSALAARYLARP-DARTLGVIGA-GVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L-GVPVV 181 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHS-T-T--EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C-CTCEE
T ss_pred chhhhHHHHHHHHHHHHhCcC-CCceEEEECC-CHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c-cccce
Confidence 445566666666666777654 4568999997 988877766665533388999999986 4566667777 2 34565
Q ss_pred EEecCCccccccCCCCEEEEc
Q 018314 83 GYMGNDQLGQALEDSDVVIIP 103 (358)
Q Consensus 83 ~~~~~~d~~~al~~aDiVIi~ 103 (358)
.. +|.++++++||+|+.+
T Consensus 182 ~~---~~~~~av~~aDii~ta 199 (313)
T PF02423_consen 182 AV---DSAEEAVRGADIIVTA 199 (313)
T ss_dssp EE---SSHHHHHTTSSEEEE-
T ss_pred ec---cchhhhcccCCEEEEc
Confidence 43 4678999999998875
No 177
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=96.69 E-value=0.06 Score=49.85 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=64.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccc-------ccC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------ALE 95 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al~ 95 (358)
|+|.|+||+|.+|..++..|+..+. +|++.|+++. .....++.+.. .+..+. +-+| ..+ .+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g 75 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLG 75 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999887 8999998752 22233343211 122211 1111 111 234
Q ss_pred CCCEEEEcCCCCC-CC----CCCHHHH---HHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 96 DSDVVIIPAGVPR-KP----GMTRDDL---FNINA----GIVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 96 ~aDiVIi~ag~~~-~~----g~~r~~~---~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
.-|++|..+|... .+ ..+..++ +..|. -+.+.+.+.+.+....+.||+++.-
T Consensus 76 ~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~ 139 (259)
T PRK08340 76 GIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSV 139 (259)
T ss_pred CCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCc
Confidence 6899999998632 11 1222222 22232 2344555555433345667766544
No 178
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.68 E-value=0.011 Score=56.86 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=43.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC---CCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~---~aDiVIi~a 104 (358)
|||+|||. |.+|+.++..|...++ +|++||+++.. ..++.+.. +... .++.+.++ ++|+||++.
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~~---~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATGA---DSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Ceec---CCHHHHHhhcCCCCEEEEEe
Confidence 58999997 9999999999998887 89999987522 22222221 2221 22334444 469988874
No 179
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.68 E-value=0.014 Score=55.44 Aligned_cols=67 Identities=10% Similarity=0.218 Sum_probs=46.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+||+|||+ |.||.+++..|...++ ..+|+.+|+++.. ...+.+.. .+... ++..+.+++||+||++.
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~~---g~~~~---~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDKY---GITIT---TNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHhc---CcEEe---CCcHHHHhhCCEEEEEe
Confidence 48999997 9999999999988774 4579999976422 22232211 12222 23356679999999986
No 180
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=96.68 E-value=0.011 Score=56.19 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=66.0
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccc----cCCCCEEEEcCCC
Q 018314 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA----LEDSDVVIIPAGV 106 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a----l~~aDiVIi~ag~ 106 (358)
|.|+||+|++|++++..|...+. .+|+++|..........+........+.. .+.++.. +.+.|+||++|+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~~ 76 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGAC 76 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECccc
Confidence 57999999999999999998874 26888886542111111111000001110 1111111 2589999999986
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
+.....+.......|+.....+.+.+.+... .+|.+|
T Consensus 77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 113 (314)
T TIGR02197 77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS 113 (314)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence 4322233455678899999999998887753 344444
No 181
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.67 E-value=0.014 Score=53.41 Aligned_cols=34 Identities=32% Similarity=0.584 Sum_probs=30.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~ 63 (358)
..||+|+|+ |.+|+.++..|+..++ .+|.|+|.+
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFD 61 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 458999998 9999999999999986 589999987
No 182
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.67 E-value=0.025 Score=53.91 Aligned_cols=118 Identities=19% Similarity=0.358 Sum_probs=77.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEec-----------CCcccc
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-----------NDQLGQ 92 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-----------~~d~~~ 92 (358)
.....|.|+||++++|..+|+.++..+. .++|+|++. ....+..+.+.. ++..+.. ....++
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 4556899999988999999999999886 899999997 333344444321 2222211 012346
Q ss_pred ccCCCCEEEEcCCC-CCCCC--CCHHHH---HHH----HHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314 93 ALEDSDVVIIPAGV-PRKPG--MTRDDL---FNI----NAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (358)
Q Consensus 93 al~~aDiVIi~ag~-~~~~g--~~r~~~---~~~----N~~i~~~i~~~i~~~~p~a~iiv~tNP~d 149 (358)
...+.|++|..||+ +-++- .++.+. +.- -..+++.+.+.|.+.+ ++.|+.++.-.+
T Consensus 111 e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~IaS~aG 176 (300)
T KOG1201|consen 111 EVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIASVAG 176 (300)
T ss_pred hcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEehhhhc
Confidence 78899999999996 33332 333322 223 3567789999988765 666665554443
No 183
>PRK05875 short chain dehydrogenase; Provisional
Probab=96.67 E-value=0.045 Score=51.12 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=81.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccccC------
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------ 95 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------ 95 (358)
.++|.|+||+|.+|..++..|+..+. +|++++.+. ......++.......++..+. +-.| +.+.++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999887 899999765 222223333211111232221 1112 112222
Q ss_pred -CCCEEEEcCCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314 96 -DSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNSTVPIAAEVFKKAGT 164 (358)
Q Consensus 96 -~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP~d~~t~~~~~~~~~sg~ 164 (358)
..|+||..+|.... + ..+. .+.+..|..-...+.+.+.++ ...+.++++|.... ..+
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~-----------~~~- 152 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAA-----------SNT- 152 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhh-----------cCC-
Confidence 67999999985321 1 1222 223444555444444433322 23456665554321 111
Q ss_pred CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314 165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG 202 (358)
Q Consensus 165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G 202 (358)
.|+.-.++.+......+-..+++.++ +..+++.++.
T Consensus 153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~~i~ 188 (276)
T PRK05875 153 HRWFGAYGVTKSAVDHLMKLAADELG--PSWVRVNSIR 188 (276)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence 22222334433223344555566553 4556665553
No 184
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.67 E-value=0.044 Score=50.17 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=65.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---cc-------cccC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LG-------QALE 95 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~al~ 95 (358)
+.++|.|+||+|.+|.+++..|+..+. +|++.+.+........+.... .++..+. +-+| +. +...
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 456899999999999999999999887 899999765322222232211 1222221 1111 11 1234
Q ss_pred CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeC
Q 018314 96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tN 146 (358)
..|++|.++|..... ..+ -.+.+..|+.- .+.+.+.+.+....+.+++++.
T Consensus 80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS 140 (248)
T TIGR01832 80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS 140 (248)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 689999999864211 111 12345556443 4444444444333466666554
No 185
>PRK07326 short chain dehydrogenase; Provisional
Probab=96.66 E-value=0.036 Score=50.33 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=63.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEec-CC---ccccc-------c
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-ND---QLGQA-------L 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~---d~~~a-------l 94 (358)
.++|.|+||+|.+|+.++..|+..+. +|+++++++. .....++... .++..+.. -+ ++.+. +
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999988876 8999998752 2222334321 12322211 11 11222 2
Q ss_pred CCCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHhh--CCCeEEEEeeCC
Q 018314 95 EDSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDLCSAIAKY--CPNAIVNMISNP 147 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~i~~~i~~~i~~~--~p~a~iiv~tNP 147 (358)
.+.|+||.++|..... ..+.. +.+..|+.-...+.+.+.+. ...+.+++++..
T Consensus 81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (237)
T PRK07326 81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL 141 (237)
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence 3789999998754321 12222 33444544333333333222 234556666654
No 186
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.66 E-value=0.0057 Score=52.15 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=70.5
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc-----CCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~-----~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
|+|+|+ |.+|..+|..|.+.+. +|.|++..+ ......-.. ......+.......+..+.....|+||++..
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 789998 9999999999999887 899999765 222211111 1100111111111111135789999999862
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-cc
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TT 175 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~ 175 (358)
.. . ..+..+.++.+. |+..++.+-|=.+....+. +. +++.++++- +.
T Consensus 77 a~------------~----~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~----~~---~~~~~v~~g~~~ 125 (151)
T PF02558_consen 77 AY------------Q----LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA----EY---FPRPRVLGGVTT 125 (151)
T ss_dssp GG------------G----HHHHHHHHCTGEETTEEEEEESSSSSHHHHHH----CH---STGSGEEEEEEE
T ss_pred cc------------c----hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH----HH---cCCCcEEEEEEe
Confidence 21 1 233555566666 6778888899887665432 22 566788754 44
No 187
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.66 E-value=0.0075 Score=58.89 Aligned_cols=95 Identities=19% Similarity=0.261 Sum_probs=60.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
.-..++|+|||. |.+|+.+|..|...+. +|+.||+..... .+ .++. ..++.+++++||+|++..
T Consensus 143 ~l~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~--------~~~~---~~~l~ell~~aDiVil~l 206 (330)
T PRK12480 143 PVKNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LD--------FLTY---KDSVKEAIKDADIISLHV 206 (330)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hh--------hhhc---cCCHHHHHhcCCEEEEeC
Confidence 345679999997 9999999999887665 999999865211 00 0111 235678899999999975
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~ 148 (358)
|.. ..+..++. ...+....|++++|+++--.
T Consensus 207 --P~t---------~~t~~li~--~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 207 --PAN---------KESYHLFD--KAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred --CCc---------HHHHHHHh--HHHHhcCCCCcEEEEcCCcc
Confidence 211 12222221 23333345788888776543
No 188
>PRK06172 short chain dehydrogenase; Provisional
Probab=96.65 E-value=0.038 Score=50.84 Aligned_cols=156 Identities=14% Similarity=0.116 Sum_probs=81.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---ccccccC-----
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQALE----- 95 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~----- 95 (358)
+.++|.|+||+|.+|..++..|+..+. +|++++.++. .....++.+.. .++..+. +-+ ++.+.++
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999998886 8999998752 22233333222 1233321 111 1222222
Q ss_pred --CCCEEEEcCCCCCCC----CCCHH---HHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314 96 --DSDVVIIPAGVPRKP----GMTRD---DLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA 162 (358)
Q Consensus 96 --~aDiVIi~ag~~~~~----g~~r~---~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~s 162 (358)
.-|+||..+|..... ..+.. +.+..|+.-. +...+.+.+.. .+.+++++..... .
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~sS~~~~-----------~ 149 (253)
T PRK06172 82 YGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQG-GGAIVNTASVAGL-----------G 149 (253)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhc-----------c
Confidence 459999999864221 22332 2344554443 33344444332 3455655553311 1
Q ss_pred CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314 163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (358)
Q Consensus 163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 201 (358)
+ .+..-.++.+.-....+-+.+++.+ .+..+++..+
T Consensus 150 ~-~~~~~~Y~~sKaa~~~~~~~la~e~--~~~~i~v~~i 185 (253)
T PRK06172 150 A-APKMSIYAASKHAVIGLTKSAAIEY--AKKGIRVNAV 185 (253)
T ss_pred C-CCCCchhHHHHHHHHHHHHHHHHHh--cccCeEEEEE
Confidence 1 2222233333222234556666665 3456666555
No 189
>PRK08278 short chain dehydrogenase; Provisional
Probab=96.65 E-value=0.065 Score=50.28 Aligned_cols=158 Identities=14% Similarity=0.161 Sum_probs=84.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---------HHHHHHhhcCCCCccEEEEe-cC---Cccccc
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------PGVAADVGHINTRSEVAGYM-GN---DQLGQA 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------~~~~~dl~~~~~~~~v~~~~-~~---~d~~~a 93 (358)
+.+++.|+||+|++|..++..|+..+. +|++++.+.. ...+.++.... .++..+. +- .++.+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~ 80 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAA 80 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHH
Confidence 345899999999999999999998886 8999997641 11122232211 1222221 11 112222
Q ss_pred c-------CCCCEEEEcCCCCCC-C--CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH
Q 018314 94 L-------EDSDVVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA 156 (358)
Q Consensus 94 l-------~~aDiVIi~ag~~~~-~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~ 156 (358)
+ ...|+||.++|.... + ..+.. ..+..|+. +.+.+.+.+.+. ..+.+++++.+.....
T Consensus 81 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~-~~g~iv~iss~~~~~~---- 155 (273)
T PRK08278 81 VAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKS-ENPHILTLSPPLNLDP---- 155 (273)
T ss_pred HHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhc-CCCEEEEECCchhccc----
Confidence 2 367999999986321 1 22332 23444544 334444444433 3456666664432110
Q ss_pred HHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314 157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (358)
Q Consensus 157 ~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 201 (358)
. +++....++.+.....++-..+++.++ ++.|++..+
T Consensus 156 -----~-~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i 192 (273)
T PRK08278 156 -----K-WFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNAL 192 (273)
T ss_pred -----c-ccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence 0 023344556554334566677777765 455666555
No 190
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=96.65 E-value=0.028 Score=56.48 Aligned_cols=104 Identities=18% Similarity=0.295 Sum_probs=62.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cC---CccccccCCCCEEEE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GN---DQLGQALEDSDVVII 102 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~~aDiVIi 102 (358)
++++|.|+||+|++|.+++..|+..+. +++++|.++.. ....+.+... .+.... +- +++.+.+.+.|++|.
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~-l~~~~~~~~~--~v~~v~~Dvsd~~~v~~~l~~IDiLIn 251 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDK-ITLEINGEDL--PVKTLHWQVGQEAALAELLEKVDILII 251 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHHHhhcCC--CeEEEEeeCCCHHHHHHHhCCCCEEEE
Confidence 456899999999999999999998886 89999876521 1111211111 111111 11 223345788999999
Q ss_pred cCCCCCCCCCCH---HHHHHHHH----HHHHHHHHHHHhh
Q 018314 103 PAGVPRKPGMTR---DDLFNINA----GIVKDLCSAIAKY 135 (358)
Q Consensus 103 ~ag~~~~~g~~r---~~~~~~N~----~i~~~i~~~i~~~ 135 (358)
.||.....+.+. .+.+..|. .+++.+.+.+++.
T Consensus 252 nAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~ 291 (406)
T PRK07424 252 NHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTN 291 (406)
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998643333332 23445554 4556666666554
No 191
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=96.63 E-value=0.03 Score=51.57 Aligned_cols=111 Identities=13% Similarity=0.180 Sum_probs=63.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEe-cCCc---ccc-------ccC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GNDQ---LGQ-------ALE 95 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al~ 95 (358)
|+|.|+||+|++|..++..|...+. +|+++|.++.. ....++. .++.... +-+| ..+ .+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~i~~~~~~~~~~~~ 73 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWR 73 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhc-----cceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5899999999999999999998887 89999986521 1111111 1122111 1111 111 234
Q ss_pred CCCEEEEcCCCCC--CC--CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314 96 DSDVVIIPAGVPR--KP--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 96 ~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
+.|+||..+|... .+ ..+. .+.+..|..- .+.+.+.+.+.. .+.++++|..
T Consensus 74 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~ 135 (248)
T PRK10538 74 NIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGST 135 (248)
T ss_pred CCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECCc
Confidence 7999999998632 11 2222 2334555444 455555554433 3456666553
No 192
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.63 E-value=0.03 Score=51.82 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=68.1
Q ss_pred ccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEe-cCCc---cc
Q 018314 17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-GNDQ---LG 91 (358)
Q Consensus 17 ~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d---~~ 91 (358)
|+..+.+++ .++|.|+||+|.+|..++..|+..+. .+++++.++ .......+.+.. .++..+. +.+| ..
T Consensus 6 ~~~~~~~l~--~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~ 79 (258)
T PRK06935 6 FSMDFFSLD--GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAE 79 (258)
T ss_pred hccccccCC--CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHH
Confidence 444445443 45899999999999999999998887 888998764 122222222211 1222221 1122 11
Q ss_pred ccc-------CCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314 92 QAL-------EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 92 ~al-------~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
+.+ ...|++|.++|.... + ..+. .+.+..|+.- .+.+.+.+++.. .+.+++++..
T Consensus 80 ~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~ 151 (258)
T PRK06935 80 KVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQG-SGKIINIASM 151 (258)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC-CeEEEEECCH
Confidence 222 267999999986431 1 1222 2334455444 444445554433 3556666554
No 193
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=96.63 E-value=0.023 Score=52.55 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=80.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-c---CCccccc-------c
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G---NDQLGQA-------L 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a-------l 94 (358)
.++|.|+||+|.+|..++..|+..+. +|++.|.+.. .....++.. ++.... + ..+..++ +
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGP-----AAIAVSLDVTRQDSIDRIVAAAVERF 78 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999887 8999998762 222222221 122111 1 1112222 2
Q ss_pred CCCCEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHH----hhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314 95 EDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIA----KYCPNAIVNMISNPVNSTVPIAAEVFKKAGT 164 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~----~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~ 164 (358)
...|++|.++|.... + ..+ -...+..|..-...+.+.+. +..+.+.+++++..... .|
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~-----------~~- 146 (257)
T PRK07067 79 GGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGR-----------RG- 146 (257)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhC-----------CC-
Confidence 468999999886421 1 112 22335556554444444443 33344566666553211 12
Q ss_pred CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceE
Q 018314 165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVP 199 (358)
Q Consensus 165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~ 199 (358)
.++.-.++.+......+.+.+++.+. +..+++.
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~ 179 (257)
T PRK07067 147 EALVSHYCATKAAVISYTQSAALALI--RHGINVN 179 (257)
T ss_pred CCCCchhhhhHHHHHHHHHHHHHHhc--ccCeEEE
Confidence 33333444433222345556666553 4455543
No 194
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.63 E-value=0.0045 Score=60.29 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=60.5
Q ss_pred hhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEE
Q 018314 6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG 83 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~ 83 (358)
|-.++|-|-.+-+-++++.+ ...+|+|||+ |.+|...+..+.....+.+|.+||++. ....+.++.+. ...+..
T Consensus 107 lT~~RTaA~salaa~~La~~-~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~ 182 (325)
T TIGR02371 107 ITDMRTGAAGGVAAKYLARK-DSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA 182 (325)
T ss_pred hhhHHHHHHHHHHHHHhCCC-CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE
Confidence 34455555555555555544 4568999997 999988766665555678999999986 23334444432 223443
Q ss_pred EecCCccccccCCCCEEEEcC
Q 018314 84 YMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 84 ~~~~~d~~~al~~aDiVIi~a 104 (358)
. .|.++++++||+|+.+-
T Consensus 183 ~---~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 183 A---TDPREAVEGCDILVTTT 200 (325)
T ss_pred e---CCHHHHhccCCEEEEec
Confidence 2 45678999999999864
No 195
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.62 E-value=0.051 Score=52.04 Aligned_cols=150 Identities=15% Similarity=0.077 Sum_probs=97.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCC-CccEEEEecCCcccccc--CCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINT-RSEVAGYMGNDQLGQAL--EDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al--~~aDiVIi~a 104 (358)
|+|.|+|++|.|||+++..|...++ +++.+|--. -...+.+-....+ ..++.- ..-+.+.+ ..-|.||+.|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D---~~~L~~vf~~~~idaViHFA 75 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQFKFYEGDLLD---RALLTAVFEENKIDAVVHFA 75 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccCceEEecccc---HHHHHHHHHhcCCCEEEECc
Confidence 6899999999999999999999998 999999654 1112111100000 001110 00111111 3788999988
Q ss_pred CCCCCCCC---CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-----eeCCCCc-chHHHHHHHHHhCCCCCCceEeecc
Q 018314 105 GVPRKPGM---TRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-----ISNPVNS-TVPIAAEVFKKAGTYNEKKLFGVTT 175 (358)
Q Consensus 105 g~~~~~g~---~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv-----~tNP~d~-~t~~~~~~~~~sg~~~~~kviG~t~ 175 (358)
|... -|+ .-+.++..|+--...+.+.|++++.+-+|.. +.+|..+ +++ ... ..|.+.+|-|.
T Consensus 76 a~~~-VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E-------~~~-~~p~NPYG~sK 146 (329)
T COG1087 76 ASIS-VGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISE-------TSP-LAPINPYGRSK 146 (329)
T ss_pred cccc-cchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCC-------CCC-CCCCCcchhHH
Confidence 7432 132 2467889999999999999999997765432 3455542 221 222 55778899998
Q ss_pred ccHHHHHHHHHHHcCCC
Q 018314 176 LDVVRAKTFYAGKANVN 192 (358)
Q Consensus 176 lds~R~~~~la~~l~v~ 192 (358)
|...++.+-+++..+.+
T Consensus 147 lm~E~iL~d~~~a~~~~ 163 (329)
T COG1087 147 LMSEEILRDAAKANPFK 163 (329)
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 87888888888887644
No 196
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=96.61 E-value=0.048 Score=50.36 Aligned_cols=118 Identities=14% Similarity=0.216 Sum_probs=67.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------cC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LE 95 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~ 95 (358)
++|.|+||+|.+|.+++..|+..+. +|+++|.+.. .....++.+.....++.... +.+| ..++ +.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3699999999999999999999886 8999998652 22222332211101222221 1112 1112 23
Q ss_pred CCCEEEEcCCCCCCC---CCCHHH---HHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314 96 DSDVVIIPAGVPRKP---GMTRDD---LFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV 148 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~---g~~r~~---~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~ 148 (358)
..|+||.++|.+... ..+..+ .+..|+. +.+.+.+.+.+..+++.++.++...
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~ 143 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS 143 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence 579999999865322 223222 2344443 3566666666555456677666643
No 197
>PRK12367 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.025 Score=52.61 Aligned_cols=103 Identities=14% Similarity=0.205 Sum_probs=60.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccCCCCEEEEcCCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGV 106 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVIi~ag~ 106 (358)
.+++.|+||+|++|..++..++..+. ++++.|.+......... +.. ...+..- +..++..+.+...|++|..||.
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~~-~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~ 89 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESND-ESP-NEWIKWECGKEESLDKQLASLDVLILNHGI 89 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhhc-cCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCcc
Confidence 45899999999999999999999886 89999986521111111 111 0011111 1112333556789999999986
Q ss_pred CCCCCCCH---HHHHHHHHH----HHHHHHHHHHh
Q 018314 107 PRKPGMTR---DDLFNINAG----IVKDLCSAIAK 134 (358)
Q Consensus 107 ~~~~g~~r---~~~~~~N~~----i~~~i~~~i~~ 134 (358)
......+. .+.+..|.. +.+.+.+.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~ 124 (245)
T PRK12367 90 NPGGRQDPENINKALEINALSSWRLLELFEDIALN 124 (245)
T ss_pred CCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 43222222 334555654 45555555544
No 198
>PRK07832 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.13 Score=47.99 Aligned_cols=117 Identities=20% Similarity=0.202 Sum_probs=65.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEE-ecCCcc----------ccccC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY-MGNDQL----------GQALE 95 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~-~~~~d~----------~~al~ 95 (358)
+++.|+||+|++|..++..|+..+. +|++++.++ ......++...... .+... .+-+|. .+.+.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGT-VPEHRALDISDYDAVAAFAADIHAAHG 77 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 3799999999999999999998886 799999865 22223333322111 11110 111111 12234
Q ss_pred CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCC
Q 018314 96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV 148 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~ 148 (358)
..|+||..+|..... ..+. ...+..|..- .+.+.+.+.+....+.+++++...
T Consensus 78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~ 140 (272)
T PRK07832 78 SMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA 140 (272)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence 689999999864311 1222 2334555443 344444444433346666666544
No 199
>PRK07806 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.016 Score=53.13 Aligned_cols=115 Identities=15% Similarity=0.208 Sum_probs=63.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------ 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------ 94 (358)
.++|.|+||+|++|.+++..|+..+. +|++.+.+.. .....++.... .++..+. +-+| +.+.+
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999998886 8888887541 12222333211 1222221 1122 11122
Q ss_pred -CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314 95 -EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN 146 (358)
Q Consensus 95 -~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN 146 (358)
.+.|+||..+|.......+....+..|..-...+.+.+.++. .++.++++|.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 368999999875321111122233455555555555555543 2455665554
No 200
>PRK05717 oxidoreductase; Validated
Probab=96.58 E-value=0.015 Score=53.66 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=81.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHH--HHHhhcCCCCccEEEEe-cCCc---ccc-------cc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYM-GNDQ---LGQ-------AL 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~--~~dl~~~~~~~~v~~~~-~~~d---~~~-------al 94 (358)
.++|.|+||+|++|++++..|+..+. +|++.|.+..... ..++. .++..+. +-.| ..+ .+
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKVAKALG-----ENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45799999999999999999998886 8999997652211 11121 1122111 1111 111 12
Q ss_pred CCCCEEEEcCCCCCCC-----CCCH---HHHHHHHHHHHHHHHHHHHhh--CCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314 95 EDSDVVIIPAGVPRKP-----GMTR---DDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPVNSTVPIAAEVFKKAGT 164 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~-----g~~r---~~~~~~N~~i~~~i~~~i~~~--~p~a~iiv~tNP~d~~t~~~~~~~~~sg~ 164 (358)
...|+||..+|..... ..+. ...+..|..-...+.+.+.++ ...+.+|++|..... .+
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~-----------~~- 150 (255)
T PRK05717 83 GRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR-----------QS- 150 (255)
T ss_pred CCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc-----------CC-
Confidence 3479999999864321 1122 234566665555555555432 123556666543321 11
Q ss_pred CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314 165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (358)
Q Consensus 165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 201 (358)
.+..-.+|.+......+-+.+++.++ + .+++..+
T Consensus 151 ~~~~~~Y~~sKaa~~~~~~~la~~~~--~-~i~v~~i 184 (255)
T PRK05717 151 EPDTEAYAASKGGLLALTHALAISLG--P-EIRVNAV 184 (255)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhc--C-CCEEEEE
Confidence 22223445543223355667777764 2 2555444
No 201
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.58 E-value=0.012 Score=55.81 Aligned_cols=66 Identities=23% Similarity=0.362 Sum_probs=43.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
|||+|||. |.+|.+++..|...++..+|+.||+++.. ...+.+... +... .++.+ +.+||+||++.
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~~---~~~~~-~~~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDEI---VSFEE-LKKCDVIFLAI 66 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Cccc---CCHHH-HhcCCEEEEeC
Confidence 58999997 99999999999988865589999987521 111222111 1111 12334 45699999986
No 202
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=96.56 E-value=0.023 Score=53.88 Aligned_cols=105 Identities=20% Similarity=0.130 Sum_probs=65.5
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cC---CccccccC--CCCEEE
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GN---DQLGQALE--DSDVVI 101 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~--~aDiVI 101 (358)
||.|+||+|++|..++..|...+. +|+++|.... ......+.+.. .++... +. +++.++++ +.|+||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~d~vv 75 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERIT---RVTFVEGDLRDRELLDRLFEEHKIDAVI 75 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhcccc---ceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 689999999999999999998886 7888885431 11111111110 222221 11 12223343 689999
Q ss_pred EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCe
Q 018314 102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNA 139 (358)
Q Consensus 102 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a 139 (358)
.++|..... .....+.+..|+.....+.+.+.+.....
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ 115 (328)
T TIGR01179 76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKK 115 (328)
T ss_pred ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCE
Confidence 999864322 12334567788988889988888765443
No 203
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.56 E-value=0.033 Score=53.07 Aligned_cols=122 Identities=18% Similarity=0.267 Sum_probs=81.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe----cCCccc-------c
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM----GNDQLG-------Q 92 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~----~~~d~~-------~ 92 (358)
-..+.|.|+||++++|.++|+.++..|. .++|+.... .+....++.......++.... +.++.+ .
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999986 678887765 333335555443211122221 111222 3
Q ss_pred ccCCCCEEEEcCCCCCCCC-C---C---HHHHHH----HHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcc
Q 018314 93 ALEDSDVVIIPAGVPRKPG-M---T---RDDLFN----INAGIVKDLCSAIAKYCPNAIVNMISNPVNST 151 (358)
Q Consensus 93 al~~aDiVIi~ag~~~~~g-~---~---r~~~~~----~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~ 151 (358)
-+.+.|+.|..||..+ .+ . + ....+. ..+-..+...+.+++.+ ++.|++++...+-+
T Consensus 88 ~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~ 155 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKM 155 (282)
T ss_pred hcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccccc
Confidence 5689999999999877 32 1 1 222333 44778899999999988 88888777776544
No 204
>PRK06141 ornithine cyclodeaminase; Validated
Probab=96.54 E-value=0.0055 Score=59.36 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=61.4
Q ss_pred hhhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccE
Q 018314 4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV 81 (358)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v 81 (358)
..+-.++|-|-.+.+-+++..+ ...+|+|||+ |.+|...+..+.....+.+|.+||+.. ....+.++.+.. ..+
T Consensus 102 ~~lT~~RTaa~sala~~~La~~-~~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g--~~~ 177 (314)
T PRK06141 102 TELTARRTAAASALAASYLARK-DASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG--FDA 177 (314)
T ss_pred cchhcchhHHHHHHHHHHhCCC-CCceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC--Cce
Confidence 3445566666666666665544 4568999997 999999987666533356999999875 334444444321 134
Q ss_pred EEEecCCccccccCCCCEEEEcC
Q 018314 82 AGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 82 ~~~~~~~d~~~al~~aDiVIi~a 104 (358)
... .++++++++||+|+.+-
T Consensus 178 ~~~---~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 178 EVV---TDLEAAVRQADIISCAT 197 (314)
T ss_pred EEe---CCHHHHHhcCCEEEEee
Confidence 432 44567899999996653
No 205
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.54 E-value=0.013 Score=54.33 Aligned_cols=109 Identities=19% Similarity=0.172 Sum_probs=62.4
Q ss_pred cCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cC----Ccccccc-C
Q 018314 22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GN----DQLGQAL-E 95 (358)
Q Consensus 22 ~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~----~d~~~al-~ 95 (358)
-..+.+++||.|+||+|.+|+.++..|...+. +|+.+.++....... +.. . ..++... +- .++.+++ .
T Consensus 11 ~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~-~--~~~~~~~~Dl~d~~~~l~~~~~~ 84 (251)
T PLN00141 11 DAENVKTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQ-D--PSLQIVRADVTEGSDKLVEAIGD 84 (251)
T ss_pred ccccccCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-ccc-C--CceEEEEeeCCCCHHHHHHHhhc
Confidence 34556788999999999999999999988876 787776554221111 111 1 1222221 11 1233556 6
Q ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Q 018314 96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~ 138 (358)
++|+||.++|.....+. ......|..-...+.+.+.+....
T Consensus 85 ~~d~vi~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~ 125 (251)
T PLN00141 85 DSDAVICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT 125 (251)
T ss_pred CCCEEEECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC
Confidence 89999998875322111 111223444455666666655443
No 206
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.54 E-value=0.011 Score=57.32 Aligned_cols=73 Identities=30% Similarity=0.406 Sum_probs=50.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHh-CCCCcEEEEEecCCcHHHH-HHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~-~~~~~ei~L~D~~~~~~~~-~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
++||+|+||+|.||+.+...|.. ...+.++.++-..+..|+. .++..-.. .+.- ...| ..+++++|+|++++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~-~~~~~~~Divf~~ag 75 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAAD-EFVFSDVDIVFFAAG 75 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--cccc-ccccccCCEEEEeCc
Confidence 46999999999999999999999 4567778888776644443 44443221 1111 0122 245779999999986
No 207
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.54 E-value=0.028 Score=51.98 Aligned_cols=156 Identities=16% Similarity=0.201 Sum_probs=83.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCC---ccccc-------cCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GND---QLGQA-------LED 96 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a-------l~~ 96 (358)
.+++.|+||+|.+|..++..|+..+. +|++++.++.......+.... .++..+. +-+ +..+. +..
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 45799999999999999999999887 899988754322222222211 1222211 111 12222 235
Q ss_pred CCEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCC
Q 018314 97 SDVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN 166 (358)
Q Consensus 97 aDiVIi~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~ 166 (358)
.|++|..||..... ..+.. ..+..|+ .+.+.+.+.+.+....+.||+++...... + .+
T Consensus 84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~-----------~-~~ 151 (251)
T PRK12481 84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQ-----------G-GI 151 (251)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcC-----------C-CC
Confidence 79999999864321 12222 2344453 34566666665544446677665543211 1 12
Q ss_pred CCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314 167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (358)
Q Consensus 167 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 201 (358)
..-.++.+......+-+.+|..+. +..|++..+
T Consensus 152 ~~~~Y~asK~a~~~l~~~la~e~~--~~girvn~v 184 (251)
T PRK12481 152 RVPSYTASKSAVMGLTRALATELS--QYNINVNAI 184 (251)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence 222334433223445566666553 455655544
No 208
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.51 E-value=0.0096 Score=50.84 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=48.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+.++|+|+|+ |.+|..++..+...+ ..++.++|.+.. ...+.++.... ..... .+..+.++++|+||.+.
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG--IAIAY----LDLEELLAEADLIINTT 89 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc--cceee----cchhhccccCCEEEeCc
Confidence 4569999998 999999999998876 458999998752 22223332110 01111 23455689999999987
Q ss_pred CCC
Q 018314 105 GVP 107 (358)
Q Consensus 105 g~~ 107 (358)
..+
T Consensus 90 ~~~ 92 (155)
T cd01065 90 PVG 92 (155)
T ss_pred CCC
Confidence 543
No 209
>PLN02256 arogenate dehydrogenase
Probab=96.50 E-value=0.017 Score=55.81 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=45.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcccccc-CCCCEEEEcC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA 104 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al-~~aDiVIi~a 104 (358)
.+++||+|||+ |.+|..++..+...+. +|+.+|.+.....+.++ . +..+ ++..+.+ .++|+||++.
T Consensus 34 ~~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g----v~~~---~~~~e~~~~~aDvVilav 100 (304)
T PLN02256 34 SRKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G----VSFF---RDPDDFCEEHPDVVLLCT 100 (304)
T ss_pred CCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C----Ceee---CCHHHHhhCCCCEEEEec
Confidence 45679999997 9999999999988775 89999987532222221 1 1222 2334444 4799999985
No 210
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.50 E-value=0.0065 Score=58.61 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=63.7
Q ss_pred hhhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccE
Q 018314 4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV 81 (358)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v 81 (358)
+.+-.++|-|-.+-+.+++..+ ...+|+|+|+ |.+|...+..+.......+|.+||++. +...+.++.+.. ..+
T Consensus 102 ~~lT~~RTaA~sala~~~La~~-~~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~--~~~ 177 (304)
T PRK07340 102 PTVTGRRTAAVSLLAARTLAPA-PPGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG--PTA 177 (304)
T ss_pred hhHHHHHHHHHHHHHHHHhCCC-CCCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC--Cee
Confidence 4455666766666666666554 4569999997 999999988876533347999999976 334444454321 123
Q ss_pred EEEecCCccccccCCCCEEEEcCC
Q 018314 82 AGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 82 ~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
. . .+.++++.+||+||.+-.
T Consensus 178 ~-~---~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 178 E-P---LDGEAIPEAVDLVVTATT 197 (304)
T ss_pred E-E---CCHHHHhhcCCEEEEccC
Confidence 2 1 355778999999998653
No 211
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.49 E-value=0.023 Score=48.26 Aligned_cols=33 Identities=27% Similarity=0.600 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
||.|+|+ |.+|+.++..|+..+. .++.++|.+.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT 33 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence 6899998 9999999999999986 6899999863
No 212
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=96.49 E-value=0.096 Score=48.70 Aligned_cols=155 Identities=14% Similarity=0.163 Sum_probs=94.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC-CCccEEEEecC-------CccccccCCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TRSEVAGYMGN-------DQLGQALEDSD 98 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~-~~~~v~~~~~~-------~d~~~al~~aD 98 (358)
+-+.|+||++++|..+|..|+..|. .++|..++. .++.+.++.+.. ....+..+ +. ..+.+.+...|
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVt-D~~~~~~~i~~~~~~~g~iD 83 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVT-DRAAVEAAIEALPEEFGRID 83 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccC-CHHHHHHHHHHHHHhhCccc
Confidence 3478889999999999999999998 999999986 566677776411 11111111 11 11345577899
Q ss_pred EEEEcCCCCCCCC------CCHHHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCC
Q 018314 99 VVIIPAGVPRKPG------MTRDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK 168 (358)
Q Consensus 99 iVIi~ag~~~~~g------~~r~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~ 168 (358)
++|..||..+... .+...++..|+.-+ +.+.+.+.+.. .+.||+++.=...-. ||..
T Consensus 84 iLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~-~G~IiN~~SiAG~~~------------y~~~ 150 (246)
T COG4221 84 ILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK-SGHIINLGSIAGRYP------------YPGG 150 (246)
T ss_pred EEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcC-CceEEEecccccccc------------CCCC
Confidence 9999999754321 12345567776554 55555555443 557787766553221 6667
Q ss_pred ceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314 169 KLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (358)
Q Consensus 169 kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 201 (358)
.+++-|.-...-|...+-+.+ ..+.|++..+
T Consensus 151 ~vY~ATK~aV~~fs~~LR~e~--~g~~IRVt~I 181 (246)
T COG4221 151 AVYGATKAAVRAFSLGLRQEL--AGTGIRVTVI 181 (246)
T ss_pred ccchhhHHHHHHHHHHHHHHh--cCCCeeEEEe
Confidence 787775332223333333332 2467777666
No 213
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.48 E-value=0.02 Score=51.02 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=61.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~ 108 (358)
|||+||||+|.+|+.++..+..+++ |++-+=+++.+-.+. ..... .+-..+ +.+.+.++++|-|+||.+-|.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~--~~~~i-~q~Dif-d~~~~a~~l~g~DaVIsA~~~~~ 74 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR--QGVTI-LQKDIF-DLTSLASDLAGHDAVISAFGAGA 74 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc--cccee-eccccc-ChhhhHhhhcCCceEEEeccCCC
Confidence 7999999999999999999999998 888887765221111 11100 011111 11223468999999999876543
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
++. . ..-.+-.+.+...++... ...++++.
T Consensus 75 -~~~--~---~~~~k~~~~li~~l~~ag-v~RllVVG 104 (211)
T COG2910 75 -SDN--D---ELHSKSIEALIEALKGAG-VPRLLVVG 104 (211)
T ss_pred -CCh--h---HHHHHHHHHHHHHHhhcC-CeeEEEEc
Confidence 221 1 112222455555555433 44566664
No 214
>PLN02686 cinnamoyl-CoA reductase
Probab=96.48 E-value=0.011 Score=58.43 Aligned_cols=108 Identities=11% Similarity=0.129 Sum_probs=66.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhcC---C-CCccEEEEe----cCCccccccCC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI---N-TRSEVAGYM----GNDQLGQALED 96 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~---~-~~~~v~~~~----~~~d~~~al~~ 96 (358)
.++++|.|+||+|++|++++..|+..+. +|+++..+... ....++... . ....+.... +.+++.+++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~ 128 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG 128 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence 4567999999999999999999999887 78776544311 111122110 0 001222221 11234567889
Q ss_pred CCEEEEcCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHhh
Q 018314 97 SDVVIIPAGVPRKPGM--TRDDLFNINAGIVKDLCSAIAKY 135 (358)
Q Consensus 97 aDiVIi~ag~~~~~g~--~r~~~~~~N~~i~~~i~~~i~~~ 135 (358)
+|.|+++++.....+. ........|..-...+.+.+.+.
T Consensus 129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~ 169 (367)
T PLN02686 129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT 169 (367)
T ss_pred ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence 9999998875322221 12344567888888888888775
No 215
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.46 E-value=0.024 Score=51.28 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=31.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.++|.|+||+|.+|..++..|+..+. +|+++|.+.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~ 41 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGA 41 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCCh
Confidence 45899999999999999999998886 799999865
No 216
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.46 E-value=0.02 Score=52.59 Aligned_cols=114 Identities=15% Similarity=0.237 Sum_probs=65.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---ccccc-------c
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQA-------L 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a-------l 94 (358)
.++|.|+||+|.+|..++..|...+. +|++++++.. .....++.... .++..+. +-. ++.++ +
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999998887 8999998762 22233343211 1222221 111 11122 2
Q ss_pred CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeC
Q 018314 95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tN 146 (358)
.+.|+||.++|..... ..+. .+.+..|..- .+.+.+.+++... ..+++++.
T Consensus 80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~iss 140 (258)
T PRK12429 80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG-GRIINMAS 140 (258)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-eEEEEEcc
Confidence 3689999999854211 1111 2233444443 6666666665543 34554544
No 217
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=96.44 E-value=0.042 Score=50.21 Aligned_cols=114 Identities=21% Similarity=0.282 Sum_probs=64.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------c
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l 94 (358)
.++|.|+||+|++|+.++..|+..+. +|+++|.+.. .....++.+.. .++.... +-.| +.+. +
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999887 8999998652 22223333221 1232221 1111 1122 2
Q ss_pred CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHH----HHhhCCCeEEEEeeC
Q 018314 95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN 146 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~iiv~tN 146 (358)
...|+||..+|..... ..+. ...+..|+.-...+.+. +++.. .+.+++++.
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~iss 139 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERG-AGRIVNIAS 139 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEECc
Confidence 3589999999853211 1222 22355665555444444 43333 344555544
No 218
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.43 E-value=0.0071 Score=57.99 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=46.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+||+|||. |.+|..++..|+..++ +|+.||+++.. ..++.... +.. ..++.+++++||+||++.
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~~---~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----ATP---AASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Ccc---cCCHHHHHhcCCEEEEec
Confidence 58999997 9999999999998887 89999987522 22232221 111 134457889999999985
No 219
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=96.42 E-value=0.0066 Score=57.45 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=54.8
Q ss_pred ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCc--cEEEEecCCccccccCCCC
Q 018314 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSD 98 (358)
Q Consensus 21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~--~v~~~~~~~d~~~al~~aD 98 (358)
....+..+.||+|+||+|+|||+++-.|+..++ +|.-.|-.-. +....+.|....+ ++.... --..-++.+|
T Consensus 20 ~~~~p~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ft-g~k~n~~~~~~~~~fel~~hd---v~~pl~~evD 93 (350)
T KOG1429|consen 20 EQVKPSQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFT-GRKENLEHWIGHPNFELIRHD---VVEPLLKEVD 93 (350)
T ss_pred hcccCCCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEecccc-cchhhcchhccCcceeEEEee---chhHHHHHhh
Confidence 445556778999999999999999999999986 8988886532 2223344443222 233221 1234689999
Q ss_pred EEEEcCCC
Q 018314 99 VVIIPAGV 106 (358)
Q Consensus 99 iVIi~ag~ 106 (358)
-|+..|..
T Consensus 94 ~IyhLAap 101 (350)
T KOG1429|consen 94 QIYHLAAP 101 (350)
T ss_pred hhhhhccC
Confidence 99998754
No 220
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.42 E-value=0.0067 Score=59.04 Aligned_cols=93 Identities=16% Similarity=0.256 Sum_probs=58.7
Q ss_pred hhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEE
Q 018314 6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG 83 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~ 83 (358)
+-..+|-|-.+-+-++++.+ ...+|+|||+ |.+|...+..+.....+.+|.++|+++ ....+.++.+. ....+..
T Consensus 106 lT~~RTaa~sala~~~la~~-~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~ 182 (325)
T PRK08618 106 LTQIRTGALSGVATKYLARE-DAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-FNTEIYV 182 (325)
T ss_pred hhhhhHHHHHHHHHHHhcCC-CCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-cCCcEEE
Confidence 34445555444444554444 3558999997 999987776665444468999999976 23334444322 1223443
Q ss_pred EecCCccccccCCCCEEEEcC
Q 018314 84 YMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 84 ~~~~~d~~~al~~aDiVIi~a 104 (358)
+ +|+++++.+||+||.+-
T Consensus 183 ~---~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 183 V---NSADEAIEEADIIVTVT 200 (325)
T ss_pred e---CCHHHHHhcCCEEEEcc
Confidence 3 45678899999999864
No 221
>PRK05865 hypothetical protein; Provisional
Probab=96.42 E-value=0.011 Score=64.48 Aligned_cols=104 Identities=18% Similarity=0.103 Sum_probs=69.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccCCCCEEEEcCCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGVP 107 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVIi~ag~~ 107 (358)
|||.|+||+|++|++++..|...+. +|+.+|.+.... +.. .. .-+..- .+.+++.++++++|+||++|+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~v-~~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-SA-DFIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-Cc-eEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 5899999999999999999998887 899999753211 110 10 011111 11134456788999999998753
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148 (358)
Q Consensus 108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~ 148 (358)
. + ....|+.....+.+.+++.+.. .+|.+|.+.
T Consensus 73 ~-~------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~ 105 (854)
T PRK05865 73 G-R------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH 105 (854)
T ss_pred c-c------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence 2 1 3467888888888888877543 456666654
No 222
>PRK12937 short chain dehydrogenase; Provisional
Probab=96.41 E-value=0.053 Score=49.41 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=64.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cC---Ccccccc-----
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GN---DQLGQAL----- 94 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al----- 94 (358)
+.++|.|+||+|.+|+.++..|+..+. ++++.+.+.. .....++.... .++..+. +- .++++++
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999887 7777765441 22222333221 1233221 11 1222233
Q ss_pred --CCCCEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeC
Q 018314 95 --EDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN 146 (358)
Q Consensus 95 --~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tN 146 (358)
.+.|+||..+|.... + ..+ -...+..|+.-...+...+.+. .+++.+++++.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 140 (245)
T PRK12937 80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST 140 (245)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence 368999999986421 1 111 2233556655444444444333 24456666654
No 223
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.40 E-value=0.04 Score=51.23 Aligned_cols=110 Identities=18% Similarity=0.188 Sum_probs=62.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---ccccc-------c
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQA-------L 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a-------l 94 (358)
.+++.|+||+|.+|..++..|+..+. +|++.|.+.. .....++. .++..+. +-+ ++.+. +
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999999887 8999998752 22222221 1122211 111 12222 2
Q ss_pred CCCCEEEEcCCCCCCC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314 95 EDSDVVIIPAGVPRKP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
...|++|..+|..... ..+. ...+..|+. ..+.+.+.+. .+.+.+|+++.
T Consensus 79 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~g~ii~isS 137 (261)
T PRK08265 79 GRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLA--RGGGAIVNFTS 137 (261)
T ss_pred CCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHh--cCCcEEEEECc
Confidence 4579999999864322 2222 223444544 4444445444 34566666654
No 224
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.40 E-value=0.025 Score=54.35 Aligned_cols=64 Identities=14% Similarity=0.312 Sum_probs=43.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCC---CCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~---aDiVIi~a 104 (358)
|||+|||. |.+|..++..|...++ +|+.||.++... ..+.+.. ... ..++.+.+++ +|+||++.
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~~--~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEAV--DVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEe
Confidence 48999997 9999999999998886 899999875222 2222211 122 1234455544 68998874
No 225
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.40 E-value=0.026 Score=51.15 Aligned_cols=36 Identities=28% Similarity=0.539 Sum_probs=31.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.+++|.|+||+|.+|..++..|+.++. +|.+++.++
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~ 39 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE 39 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 346899999999999999999998887 799999875
No 226
>PRK07576 short chain dehydrogenase; Provisional
Probab=96.39 E-value=0.049 Score=50.77 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=64.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---ccccc-------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQA------- 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a------- 93 (358)
+.++|.|+||+|.+|..++..|+..+. +|++.|++.. .....++.... .++..+. +.+ ++.+.
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999998886 8999997652 22222333211 1122111 111 12222
Q ss_pred cCCCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHhh--CCCeEEEEeeCCC
Q 018314 94 LEDSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPV 148 (358)
Q Consensus 94 l~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~i~~~i~~~i~~~--~p~a~iiv~tNP~ 148 (358)
+...|+||..+|..... ..+.. ..+..|..-...+.+...++ .+++.+++++.+.
T Consensus 84 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~ 146 (264)
T PRK07576 84 FGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ 146 (264)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence 23569999998753211 22222 23345544333333333222 1346677776654
No 227
>PRK12829 short chain dehydrogenase; Provisional
Probab=96.39 E-value=0.038 Score=50.97 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=32.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+.++|.|+||+|.+|+.++..|+..+. +|++++.++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~ 45 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE 45 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 446999999999999999999999887 899999865
No 228
>PRK05854 short chain dehydrogenase; Provisional
Probab=96.38 E-value=0.058 Score=51.90 Aligned_cols=171 Identities=14% Similarity=0.096 Sum_probs=86.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCccc----------cc
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG----------QA 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a 93 (358)
+.+++.|+||+|++|..++..|+..+. +|++.+++.. .....++.......++.... +-.|+. +.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 345899999999999999999999886 8999998752 22223343211111233221 111211 12
Q ss_pred cCCCCEEEEcCCCCCCC--CC---CHHHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314 94 LEDSDVVIIPAGVPRKP--GM---TRDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT 164 (358)
Q Consensus 94 l~~aDiVIi~ag~~~~~--g~---~r~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~ 164 (358)
....|++|..||....+ .. .-...+..| .-+.+.+.+.+++. .+.|++++.-......+-..-+.....
T Consensus 91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS~~~~~~~~~~~~~~~~~~ 168 (313)
T PRK05854 91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSSIAARRGAINWDDLNWERS 168 (313)
T ss_pred CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEechhhcCCCcCccccccccc
Confidence 24589999999863221 11 122234444 33455666666543 355665554332111000000000001
Q ss_pred CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314 165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (358)
Q Consensus 165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 201 (358)
+++...++.+.+....+-..+++.+......|++..+
T Consensus 169 ~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v 205 (313)
T PRK05854 169 YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLA 205 (313)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence 2333444554444445556666655444445655544
No 229
>PRK12320 hypothetical protein; Provisional
Probab=96.38 E-value=0.016 Score=61.89 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=64.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-c--CCccccccCCCCEEEEcCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G--NDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~--~~d~~~al~~aDiVIi~ag 105 (358)
|||.|+||+|++|++++..|...++ +|+.+|..... ..+ ..++... + ...+.+++.++|+||++++
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~----~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa 69 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALD----PRVDYVCASLRNPVLQELAGEADAVIHLAP 69 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----ccc----CCceEEEccCCCHHHHHHhcCCCEEEEcCc
Confidence 5899999999999999999998887 89999965321 111 1111111 0 1123355689999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
... .. ....|+.....+.+.+++.+. .+|.+|
T Consensus 70 ~~~--~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S 101 (699)
T PRK12320 70 VDT--SA----PGGVGITGLAHVANAAARAGA--RLLFVS 101 (699)
T ss_pred cCc--cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence 521 11 124678888888888887654 455444
No 230
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.38 E-value=0.009 Score=58.26 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=58.4
Q ss_pred hhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEE
Q 018314 6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG 83 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~ 83 (358)
|-..+|=+-.+.+..++..+ ..++|+|||+ |..|...+..+.....+.+|.+||++. .+..+.++.+.. ...+..
T Consensus 111 lt~~rT~a~~~~a~~~la~~-~~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~ 187 (330)
T PRK08291 111 LTDVRTAAAGAVAARHLARE-DASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV 187 (330)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE
Confidence 33444444444444444432 4469999998 999988877776544467999999876 233344443221 123333
Q ss_pred EecCCccccccCCCCEEEEcC
Q 018314 84 YMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 84 ~~~~~d~~~al~~aDiVIi~a 104 (358)
.+|+++++.+||+||.+.
T Consensus 188 ---~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 188 ---ARDVHEAVAGADIIVTTT 205 (330)
T ss_pred ---eCCHHHHHccCCEEEEee
Confidence 256678899999998864
No 231
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.0056 Score=56.47 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=45.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhcCCCCccEEEEecC--Cccccc-cCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGN--DQLGQA-LEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~--~d~~~a-l~~aDiVIi~a 104 (358)
|+|+|+|+ |.+|+++|..|...++ +++++|.++.. .... .+.. ...+.....+ +-|+++ +.++|.+|.+-
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~~--~~~~-~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEERVEEFL--ADEL-DTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHHh--hhhc-ceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 68999998 9999999999999998 89999998721 1111 1100 0111111111 123333 78999999875
Q ss_pred C
Q 018314 105 G 105 (358)
Q Consensus 105 g 105 (358)
|
T Consensus 75 ~ 75 (225)
T COG0569 75 G 75 (225)
T ss_pred C
Confidence 4
No 232
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=96.37 E-value=0.013 Score=55.03 Aligned_cols=90 Identities=12% Similarity=0.237 Sum_probs=56.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCC--cEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~--~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
.|||+|||+ |.+|.+++..|...+.. .+|+.+|.++.. + .+... .+..+.++++|+||++.-
T Consensus 3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~~---~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVYL---QSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEEe---CChHHHHHhCCEEEEEeC
Confidence 369999997 99999999999887632 358888875411 0 11211 233456789999999841
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d 149 (358)
-..++++.+.+..+-++..+|.+.+-++
T Consensus 67 ----------------p~~~~~vl~~i~~~l~~~~iIS~~aGi~ 94 (260)
T PTZ00431 67 ----------------PDLAGKVLLEIKPYLGSKLLISICGGLN 94 (260)
T ss_pred ----------------HHHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence 1223344444443333335666777765
No 233
>PRK07063 short chain dehydrogenase; Provisional
Probab=96.35 E-value=0.1 Score=48.16 Aligned_cols=117 Identities=20% Similarity=0.224 Sum_probs=66.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------- 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------- 94 (358)
.+.+.|+||+|.+|..++..|+..+. +|++.|.++ ......++.......++..+. +-+| +.+.+
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45799999999999999999999887 899999875 233333443211112232221 1112 22222
Q ss_pred CCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 95 EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
...|++|..||.... + ..+. ...+..|.. +.+.+.+.+.+.. .+.||+++..
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~ 146 (260)
T PRK07063 85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERG-RGSIVNIAST 146 (260)
T ss_pred CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC-CeEEEEECCh
Confidence 368999999986421 1 1222 223344443 3455555554433 4566666553
No 234
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=96.35 E-value=0.05 Score=50.27 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=66.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------cC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LE 95 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~ 95 (358)
+.+.+.|+||+|.+|.+++..|+..+. +|+++|..+......++.... .++..+. +-+| ..+. +.
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFG 84 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 345899999999999999999999886 888888765322223332211 1222221 1111 1222 23
Q ss_pred CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314 96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
..|++|.+||..... +.+. .+.+..|..- .+.+.+.+.+..+.+.+++++.-
T Consensus 85 ~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~ 146 (253)
T PRK08993 85 HIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASM 146 (253)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECch
Confidence 589999999874311 2222 2334455443 44555555554455766666543
No 235
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.34 E-value=0.072 Score=48.59 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=65.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------c
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l 94 (358)
.++|.|+||+|.+|+.++..|+..+. +|++++.++. .....++.... .++..+. +-.| +.+. +
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998887 8999987652 22233443222 1233322 1122 1111 2
Q ss_pred CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeC
Q 018314 95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tN 146 (358)
.+.|+||.++|..... ..+. ...+..|..-...+.+.+.++ ...+.+++++.
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS 143 (250)
T PRK12939 83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS 143 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence 5789999999864321 1222 223445555444444444332 22456665554
No 236
>PRK07856 short chain dehydrogenase; Provisional
Probab=96.33 E-value=0.048 Score=50.24 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=31.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+.+++.|+||+|.+|..++..|+..+. +|++.|.+.
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~ 40 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRA 40 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 456899999999999999999998887 899999865
No 237
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.32 E-value=0.016 Score=57.22 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=48.0
Q ss_pred ceEEEEcCCCChHHHHHHHHH-hCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMK-LNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~-~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
+||+|+||+|.||+.+...|. +..+ ..+++++......+....+.... ..+.. .++ .+++++.|+|++++|
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~--~~v~~---~~~-~~~~~~vDivffa~g 73 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQD---AFD-IDALKALDIIITCQG 73 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCc--ceEEc---Ccc-cccccCCCEEEEcCC
Confidence 489999999999999999888 5554 47899998765333333222211 12332 111 247899999999886
No 238
>PRK06482 short chain dehydrogenase; Provisional
Probab=96.32 E-value=0.059 Score=50.36 Aligned_cols=112 Identities=15% Similarity=0.058 Sum_probs=63.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCcc---cc-------ccCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQL---GQ-------ALEDS 97 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------al~~a 97 (358)
++|.|+||+|++|+.++..|+..+. .+++.+.+.. ...++.... ..++..+. +-+|. .+ .+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPD--ALDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999998886 7888887641 111221111 11222221 11221 11 13457
Q ss_pred CEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHH----HhhCCCeEEEEeeC
Q 018314 98 DVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN 146 (358)
Q Consensus 98 DiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~iiv~tN 146 (358)
|+||.++|...... .+. ...+..|..-...+.+.+ ++... +.+++++.
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~~sS 135 (276)
T PRK06482 78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGG-GRIVQVSS 135 (276)
T ss_pred CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcC
Confidence 99999998653221 122 234556766665566554 43333 34555543
No 239
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.32 E-value=0.011 Score=57.38 Aligned_cols=94 Identities=9% Similarity=0.059 Sum_probs=64.1
Q ss_pred hhhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccE
Q 018314 4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEV 81 (358)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v 81 (358)
..|-.++|-|-.+-+-+++..+ ....++|||+ |..+..-+..+.....+.+|.+||++.. ...+..+.+.. ..+
T Consensus 105 ~~lT~~RTaA~sala~~~La~~-d~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~--~~v 180 (315)
T PRK06823 105 GWLTALRTALAGRIVARLLAPQ-HVSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALG--FAV 180 (315)
T ss_pred ChHHHHHHHHHHHHHHHHhcCC-CCCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcC--CcE
Confidence 3455566666666666666654 5669999997 9998887776666556789999999863 33333343322 245
Q ss_pred EEEecCCccccccCCCCEEEEcC
Q 018314 82 AGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 82 ~~~~~~~d~~~al~~aDiVIi~a 104 (358)
... ++.++++++||+|+.+-
T Consensus 181 ~~~---~~~~~av~~ADIV~taT 200 (315)
T PRK06823 181 NTT---LDAAEVAHAANLIVTTT 200 (315)
T ss_pred EEE---CCHHHHhcCCCEEEEec
Confidence 442 45678999999999854
No 240
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.32 E-value=0.013 Score=48.87 Aligned_cols=72 Identities=29% Similarity=0.394 Sum_probs=44.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC--CCccEEEEecCCccccccCCCCEEEEc
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIP 103 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~~aDiVIi~ 103 (358)
|||+|+|++|.||+.++..+...+-..=+..+|.++......|+.+.. .+..+.. ++|+++.++.+|+||-.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~~DVvIDf 74 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEEADVVIDF 74 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH-SEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhcccCCEEEEc
Confidence 699999988999999999998865433345566654211222332221 1223333 25678888899988876
No 241
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.31 E-value=0.018 Score=53.98 Aligned_cols=106 Identities=25% Similarity=0.318 Sum_probs=70.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhC----CCC-----cEEEEEecCC--c------HHHHHHhhcCCCCccEEEEecCCcc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLN----PLV-----SRLALYDIAN--T------PGVAADVGHINTRSEVAGYMGNDQL 90 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~----~~~-----~ei~L~D~~~--~------~~~~~dl~~~~~~~~v~~~~~~~d~ 90 (358)
..||.|.|| |..|..++.+|... |.- ..|+|+|.+. . ......+.+...+... ..++
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~-----~~~L 98 (255)
T PF03949_consen 25 DQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKD-----WGSL 98 (255)
T ss_dssp G-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT-------SSH
T ss_pred HcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCccccc-----ccCH
Confidence 349999998 99999998777664 653 7899999864 1 1122223332211111 1468
Q ss_pred ccccCCC--CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchH
Q 018314 91 GQALEDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVP 153 (358)
Q Consensus 91 ~~al~~a--DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~ 153 (358)
.++++++ |++|=+.|.+ | -+-+++.+.|.+++++.+|+-.|||.. -.++
T Consensus 99 ~eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p 151 (255)
T PF03949_consen 99 LEAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP 151 (255)
T ss_dssp HHHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred HHHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence 8999999 9999887643 2 134678888999999999999999987 4554
No 242
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.30 E-value=0.009 Score=58.71 Aligned_cols=93 Identities=24% Similarity=0.342 Sum_probs=62.9
Q ss_pred hhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEE
Q 018314 5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82 (358)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~ 82 (358)
.+-..+|-|-.+-+-++++.+ ....++|||+ |..+..-+..+.....+.+|.+||++. ....+.++.+. ..++.
T Consensus 107 ~lT~~RTaA~sala~~~Lar~-da~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~ 182 (346)
T PRK07589 107 LLTALRTAATSALAAKYLARP-DSRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIV 182 (346)
T ss_pred cHHHHHHHHHHHHHHHHhccC-CCcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEE
Confidence 344555655555556666544 4568999997 988877766555544578999999986 34455556542 22454
Q ss_pred EEecCCccccccCCCCEEEEcC
Q 018314 83 GYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 83 ~~~~~~d~~~al~~aDiVIi~a 104 (358)
.. ++.++++++||+|+.+-
T Consensus 183 ~~---~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 183 AC---RSVAEAVEGADIITTVT 201 (346)
T ss_pred Ee---CCHHHHHhcCCEEEEec
Confidence 42 46789999999999854
No 243
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.30 E-value=0.0092 Score=57.69 Aligned_cols=120 Identities=20% Similarity=0.266 Sum_probs=70.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHH---HhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAA---DVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~---dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
|||+|+|| |.||+.+++.|.+.+. ++.++-..+. +.... .+.+........... +.+ .+.+..+|+||++.
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~-~~~-~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVA-ATD-AEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCcccccccc-ccC-hhhcCCCCEEEEEe
Confidence 69999998 9999999999999983 6666665432 11111 111111100111111 122 46678999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceE-eeccc
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF-GVTTL 176 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kvi-G~t~l 176 (358)
.. - -..+..+.+..+. |+++|+..-|=.+..-.+ .+. ++.++++ |+|..
T Consensus 76 Ka----~------------q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l----~~~---~~~~~il~G~~~~ 126 (307)
T COG1893 76 KA----Y------------QLEEALPSLAPLLGPNTVVLFLQNGLGHEEEL----RKI---LPKETVLGGVTTH 126 (307)
T ss_pred cc----c------------cHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHH----HHh---CCcceEEEEEeee
Confidence 21 1 1344556666666 677888888888766522 222 5555555 66543
No 244
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=96.30 E-value=0.07 Score=49.29 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=67.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCccc---c-------cc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---Q-------AL 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~-------al 94 (358)
.++|.|+||+|.+|+.++..|+..+. +|++.|.+.. .....++.... .++.... +-+|.. + .+
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999998887 8999997642 22222232211 1222221 112211 1 12
Q ss_pred CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHhh----CCCeEEEEeeCC
Q 018314 95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISNP 147 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~----~p~a~iiv~tNP 147 (358)
...|+||+++|..... ..+ -.+.+..|+.-...+.+.+.++ .+.+.+++++..
T Consensus 88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~ 150 (259)
T PRK08213 88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASV 150 (259)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECCh
Confidence 4679999999853211 111 2344567777666666655544 234556656553
No 245
>PRK06180 short chain dehydrogenase; Provisional
Probab=96.28 E-value=0.076 Score=49.83 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=63.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------CC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------ED 96 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~~ 96 (358)
+++|.|+||+|++|+.++..|+..+. +|++.+.+.... .++.... ..++.... +-+| +.+.+ ..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~--~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAAR--ADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHH--HHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 45799999999999999999998886 899999865221 1222111 11222211 1111 12222 35
Q ss_pred CCEEEEcCCCCCC---CCCCHH---HHHHHHHHHHHHHHHH----HHhhCCCeEEEEeeC
Q 018314 97 SDVVIIPAGVPRK---PGMTRD---DLFNINAGIVKDLCSA----IAKYCPNAIVNMISN 146 (358)
Q Consensus 97 aDiVIi~ag~~~~---~g~~r~---~~~~~N~~i~~~i~~~----i~~~~p~a~iiv~tN 146 (358)
.|+||.++|.... ...+.. ..+..|+.-...+.+. +++.. .+.+|++|.
T Consensus 79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~iSS 137 (277)
T PRK06180 79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARR-RGHIVNITS 137 (277)
T ss_pred CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CCEEEEEec
Confidence 7999999986321 122222 3355666544444444 44433 345666654
No 246
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.28 E-value=0.31 Score=45.07 Aligned_cols=35 Identities=34% Similarity=0.387 Sum_probs=30.0
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAG-GIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G-~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.+++.|+||+| .+|..++..|+..+. +|++.|.+.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~ 52 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE 52 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 45899999876 799999999998887 799999765
No 247
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.28 E-value=0.0063 Score=55.79 Aligned_cols=105 Identities=18% Similarity=0.274 Sum_probs=67.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC------cHHH---HHHhhcCC-CCccEE------EEecCCcccc
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN------TPGV---AADVGHIN-TRSEVA------GYMGNDQLGQ 92 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~------~~~~---~~dl~~~~-~~~~v~------~~~~~~d~~~ 92 (358)
-||+|+|. |-+|+..|..++..|+ +|.||||.+ .... ..+|++.. ...+++ -.++++++.+
T Consensus 4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E 80 (313)
T KOG2305|consen 4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE 80 (313)
T ss_pred cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence 49999995 9999999999999998 999999976 1222 22343322 111111 1123567777
Q ss_pred ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcch
Q 018314 93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTV 152 (358)
Q Consensus 93 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t 152 (358)
..++|=.|=.++ .+-+...+++.+++++.. |.. |..|.....|.
T Consensus 81 ~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~t--IlaSSTSt~mp 125 (313)
T KOG2305|consen 81 LVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTT--ILASSTSTFMP 125 (313)
T ss_pred HHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCce--EEeccccccCh
Confidence 777774433332 466778889999999887 443 44555554443
No 248
>PRK06914 short chain dehydrogenase; Provisional
Probab=96.27 E-value=0.094 Score=49.03 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=62.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCccc---------cccCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---------QALED 96 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---------~al~~ 96 (358)
+.+.|+||+|.+|..++..|+..+. +|++++.+.. .....++.+.....++..+. +-+|.. +.+..
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 4689999999999999999999886 8999987652 22222222211112333322 112211 11245
Q ss_pred CCEEEEcCCCCCC--CC-CCH---HHHHHHHHHHH----HHHHHHHHhhCCCeEEEEee
Q 018314 97 SDVVIIPAGVPRK--PG-MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 97 aDiVIi~ag~~~~--~g-~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~t 145 (358)
.|+||.++|.... .. .+. .+.+..|..-. +.+.+.+++... +.+++++
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vs 139 (280)
T PRK06914 82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKS-GKIINIS 139 (280)
T ss_pred eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEC
Confidence 7999999986432 11 121 23344555444 444444554443 3444444
No 249
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.27 E-value=0.026 Score=54.56 Aligned_cols=101 Identities=25% Similarity=0.364 Sum_probs=64.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
..++|+|+|+ |.+|..++..+...+ ..+|.++|++.. ...+..+. ..+.. .+++.+++.++|+||.+.
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISAT 246 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEECC
Confidence 5679999998 999999998887744 348999998752 22333322 12211 134567789999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcch
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTV 152 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t 152 (358)
+.|.. ..++... ++.. ....+++-+++|-|+=.
T Consensus 247 ~~~~~------------~~~~~~~---~~~~~~~~~~viDlavPrdi~~ 280 (311)
T cd05213 247 GAPHY------------AKIVERA---MKKRSGKPRLIVDLAVPRDIEP 280 (311)
T ss_pred CCCch------------HHHHHHH---HhhCCCCCeEEEEeCCCCCCch
Confidence 65531 1111221 1111 24567888999998654
No 250
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.26 E-value=0.042 Score=52.24 Aligned_cols=122 Identities=24% Similarity=0.347 Sum_probs=79.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhC----CC-----CcEEEEEecCC--c------HHHHHHhhcCCCCccEEEEecCCc
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLN----PL-----VSRLALYDIAN--T------PGVAADVGHINTRSEVAGYMGNDQ 89 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~----~~-----~~ei~L~D~~~--~------~~~~~dl~~~~~~~~v~~~~~~~d 89 (358)
+..||.|.|| |..|..++.+|... |. -..++++|... . ......+.+.. . . . ...+
T Consensus 24 ~d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~-~-~---~~~~ 96 (279)
T cd05312 24 SDQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-E-E-K---EGKS 96 (279)
T ss_pred hhcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-C-c-c---cCCC
Confidence 3459999998 99999998777653 54 25899999874 1 11112222211 1 1 1 1256
Q ss_pred cccccC--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhCCC
Q 018314 90 LGQALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTY 165 (358)
Q Consensus 90 ~~~al~--~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg~~ 165 (358)
+.++++ ++|++|=+.+.+ |- +-+++.+.|.+++++.+|+-.|||.. -.++ .++++.+.
T Consensus 97 L~e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~p--e~a~~~t~-- 158 (279)
T cd05312 97 LLEVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTSKAECTA--EDAYKWTD-- 158 (279)
T ss_pred HHHHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCCccccCH--HHHHHhhc--
Confidence 889999 999988876433 21 33577888888999999999999985 3333 23344431
Q ss_pred CCCceEeec
Q 018314 166 NEKKLFGVT 174 (358)
Q Consensus 166 ~~~kviG~t 174 (358)
-+.+++.+
T Consensus 159 -G~ai~ATG 166 (279)
T cd05312 159 -GRALFASG 166 (279)
T ss_pred -CCEEEEeC
Confidence 24577873
No 251
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=96.25 E-value=0.14 Score=47.46 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=81.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---c-------cc
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---G-------QA 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~-------~a 93 (358)
+.+++.|+||+|.+|..++..|+..+. ++++.|.++. .....++.... .++..+. +-+|. . +.
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 345899999999999999999998886 7899987652 22233333221 1222221 11111 1 12
Q ss_pred cCCCCEEEEcCCCCC-CC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314 94 LEDSDVVIIPAGVPR-KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG 163 (358)
Q Consensus 94 l~~aDiVIi~ag~~~-~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg 163 (358)
+...|++|.++|... .+ ..+. ...+..|.. +.+.+.+.+.+. ..+.+++++...... +
T Consensus 85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~-----------~ 152 (265)
T PRK07097 85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKK-GHGKIINICSMMSEL-----------G 152 (265)
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCccccC-----------C
Confidence 245799999998632 11 1121 222334433 344455555443 355667666654211 1
Q ss_pred CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314 164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (358)
Q Consensus 164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 201 (358)
.+....++.+...-..+-+.+++.++ +..|++..+
T Consensus 153 -~~~~~~Y~~sKaal~~l~~~la~e~~--~~gi~v~~v 187 (265)
T PRK07097 153 -RETVSAYAAAKGGLKMLTKNIASEYG--EANIQCNGI 187 (265)
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHhh--hcCceEEEE
Confidence 22233344432222345566666653 445655444
No 252
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.25 E-value=0.026 Score=55.33 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=50.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-----c----------------HHH--HHHhhcCCCCccEEEE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----T----------------PGV--AADVGHINTRSEVAGY 84 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~----------------~~~--~~dl~~~~~~~~v~~~ 84 (358)
..||.|||+ |.+|+.++..|+..|+ ++|.|+|.+. . +.. +..+.......+++.+
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 458999998 9999999999999985 5899999874 0 001 1223332223344443
Q ss_pred ec---CCccccccCCCCEEEEcC
Q 018314 85 MG---NDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 85 ~~---~~d~~~al~~aDiVIi~a 104 (358)
.. ..++++.++++|+||.+.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~~ 124 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIIDAT 124 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEEcC
Confidence 21 123456789999999885
No 253
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.25 E-value=0.05 Score=55.59 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=75.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ 103 (358)
+.++|.|+|+ |.+|..+|..|...+. +|.++|..+. ......|.... ++.+.+.. . +...++|+||++
T Consensus 15 ~~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~g----v~~~~~~~-~-~~~~~~D~Vv~s 85 (480)
T PRK01438 15 QGLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEALG----ATVRLGPG-P-TLPEDTDLVVTS 85 (480)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHcC----CEEEECCC-c-cccCCCCEEEEC
Confidence 4568999998 9999999999988887 8999997541 11122343322 33333221 1 235679999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314 104 AGVPRKPGMTRDDLFNINAGIVKDLC--SAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG 163 (358)
Q Consensus 104 ag~~~~~g~~r~~~~~~N~~i~~~i~--~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg 163 (358)
.|++..... ....-..+++++.++- ..+.+...+..+|-+|=.++ .++.+++++++..|
T Consensus 86 ~Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g 148 (480)
T PRK01438 86 PGWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG 148 (480)
T ss_pred CCcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence 987542211 1111234566654322 22221112344566666655 77888888888766
No 254
>PLN02712 arogenate dehydrogenase
Probab=96.25 E-value=0.024 Score=60.54 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=45.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcccccc-CCCCEEEEcC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA 104 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al-~~aDiVIi~a 104 (358)
.+++||+|||. |.+|..++..|...+. +|+.+|.+.....+.++ . +..+ +|+.+.+ ++||+||++.
T Consensus 50 ~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G----v~~~---~d~~e~~~~~aDvViLav 116 (667)
T PLN02712 50 TTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G----VSFF---LDPHDLCERHPDVILLCT 116 (667)
T ss_pred CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C----CEEe---CCHHHHhhcCCCEEEEcC
Confidence 45679999997 9999999999988875 89999986422222221 1 2222 2334433 5799999985
No 255
>PRK07024 short chain dehydrogenase; Provisional
Probab=96.24 E-value=0.11 Score=48.06 Aligned_cols=113 Identities=23% Similarity=0.200 Sum_probs=63.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------- 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------- 94 (358)
+++|.|+||+|.+|..++..|+..+. +|++.|.+.. .....++.... ++.... +-+| +.+++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~i~~~~~~~~~~~ 76 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRTDALQAFAARLPKAA---RVSVYAADVRDADALAAAAADFIAAH 76 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcccCC---eeEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35899999999999999999999886 8999998651 22222222111 233221 1122 11222
Q ss_pred CCCCEEEEcCCCCCCCC----CCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314 95 EDSDVVIIPAGVPRKPG----MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~g----~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+... +.+++++.
T Consensus 77 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~-~~iv~isS 138 (257)
T PRK07024 77 GLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARR-GTLVGIAS 138 (257)
T ss_pred CCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCC-CEEEEEec
Confidence 23699999998643211 221 223444433 34445556655543 45555554
No 256
>PRK08251 short chain dehydrogenase; Provisional
Probab=96.24 E-value=0.14 Score=46.82 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=48.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc----------ccccC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQALE 95 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al~ 95 (358)
+++.|+||+|++|..++..|+..+. +|++.+.+. ......++.......++.... +.+|. .+.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999998885 899999875 222223333221112233321 11221 12234
Q ss_pred CCCEEEEcCCCC
Q 018314 96 DSDVVIIPAGVP 107 (358)
Q Consensus 96 ~aDiVIi~ag~~ 107 (358)
..|+||..+|..
T Consensus 81 ~id~vi~~ag~~ 92 (248)
T PRK08251 81 GLDRVIVNAGIG 92 (248)
T ss_pred CCCEEEECCCcC
Confidence 689999999864
No 257
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.23 E-value=0.063 Score=53.14 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=72.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHH----------Hhh----cCCCCccEEEEecCCcccc
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA----------DVG----HINTRSEVAGYMGNDQLGQ 92 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~----------dl~----~~~~~~~v~~~~~~~d~~~ 92 (358)
..++|+|||- |.||..+|..++..+. +++=+|+++..-... ++. ......+++.+ +|. +
T Consensus 8 ~~~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraT---td~-~ 80 (436)
T COG0677 8 MSATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRAT---TDP-E 80 (436)
T ss_pred CceEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEe---cCh-h
Confidence 3479999997 9999999999999998 899999986110000 111 11112356653 453 5
Q ss_pred ccCCCCEEEEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEE--EEeeCCCCcchHHHHHHHHH
Q 018314 93 ALEDSDVVIIPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIV--NMISNPVNSTVPIAAEVFKK 161 (358)
Q Consensus 93 al~~aDiVIi~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~i--iv~tNP~d~~t~~~~~~~~~ 161 (358)
.++.||++|++.=.|.+. .+..+. .+.+-++.|.++=.++-+ +=-|-|.+.+-.++--+...
T Consensus 81 ~l~~~dv~iI~VPTPl~~~~~pDls-------~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 81 ELKECDVFIICVPTPLKKYREPDLS-------YVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred hcccCCEEEEEecCCcCCCCCCChH-------HHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 688999999997666543 333333 333444444444433323 33477776655554333333
No 258
>PRK06182 short chain dehydrogenase; Validated
Probab=96.23 E-value=0.038 Score=51.60 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=64.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCcccccc-------CCCCE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQAL-------EDSDV 99 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al-------~~aDi 99 (358)
+++|.|+||+|++|..++..|...+. +|++.+.+... ..++...... -+..- ++.+++.+.+ .+.|+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~~-~~~~Dv~~~~~~~~~~~~~~~~~~~id~ 77 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGVH-PLSLDVTDEASIKAAVDTIIAEEGRIDV 77 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCCe-EEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 45899999999999999999998887 89999876521 1122211110 11110 0111222223 37899
Q ss_pred EEEcCCCCCC-C--CCC---HHHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 100 VIIPAGVPRK-P--GMT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 100 VIi~ag~~~~-~--g~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
||..+|.... + ..+ ....+..|. ..++.+.+.+++... +.+++++.
T Consensus 78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS 133 (273)
T PRK06182 78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS 133 (273)
T ss_pred EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence 9999986421 1 112 233344554 345666677766543 45565554
No 259
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.23 E-value=0.062 Score=51.21 Aligned_cols=114 Identities=12% Similarity=0.186 Sum_probs=64.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCC---ccccc-------c
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GND---QLGQA-------L 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a-------l 94 (358)
.++|.|+||+|++|..++..|+..+. +|++.|.+. ......++.... .++..+. +-+ +..+. +
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999999886 899999875 222222332211 1222211 111 11222 3
Q ss_pred CCCCEEEEcCCCCCCC--CC---CH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 95 EDSDVVIIPAGVPRKP--GM---TR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~--g~---~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
.+.|+||.+||..... .+ +. ...+..|. .+.+.+.+.+.+... +.+++++.
T Consensus 116 g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS 178 (293)
T PRK05866 116 GGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGD-GHIINVAT 178 (293)
T ss_pred CCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cEEEEECC
Confidence 3789999999864211 11 11 12344443 345556666655443 45555543
No 260
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.22 E-value=0.026 Score=52.66 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=31.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+..||.|+|+ |.+|+.++..|+..|. .+|+|+|.+.
T Consensus 23 ~~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 3469999998 9999999999999885 6999999875
No 261
>PRK09291 short chain dehydrogenase; Provisional
Probab=96.21 E-value=0.064 Score=49.28 Aligned_cols=113 Identities=18% Similarity=0.214 Sum_probs=62.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---ccccccC-CCCEEE
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQALE-DSDVVI 101 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~-~aDiVI 101 (358)
++|.|+||+|.+|..++..|+..+. ++++.+.+.. .....+..... .++.... +-+ ++.+++. +.|+||
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 4799999999999999999999886 7888887642 11111111111 1222211 112 2233343 899999
Q ss_pred EcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314 102 IPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 102 i~ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
..+|..... ..+.. ..+..|.. +.+.+.+.+.+... +.+|++|.
T Consensus 79 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~SS 132 (257)
T PRK09291 79 NNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK-GKVVFTSS 132 (257)
T ss_pred ECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEcC
Confidence 999864321 11221 22333433 34444555554443 45665653
No 262
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=96.21 E-value=0.05 Score=52.39 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=67.9
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHH-HHh----hcC-----CCC-ccEEEEecC----------C
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-ADV----GHI-----NTR-SEVAGYMGN----------D 88 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~-~dl----~~~-----~~~-~~v~~~~~~----------~ 88 (358)
+|.|+||+|++|++++..|...+...+|++..+....... .++ ... ... .+++...+. .
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 5889999999999999999988754578888876521111 111 110 000 234443221 1
Q ss_pred ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCe
Q 018314 89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 139 (358)
Q Consensus 89 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a 139 (358)
++.+..+++|+||++|+... ...+..++...|+.-...+.+...+.....
T Consensus 81 ~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~ 130 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKP 130 (367)
T ss_pred HHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCce
Confidence 12234578999999987532 123345566788888888888887765543
No 263
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=96.21 E-value=0.084 Score=56.51 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=65.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------- 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------- 94 (358)
.++|.|+||+|++|..++..|+..+. +|++.|++. ......++........+.... +-+| ..+++
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999998886 899999875 222223332111001111111 1122 22233
Q ss_pred CCCCEEEEcCCCCCC-C--CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 95 EDSDVVIIPAGVPRK-P--GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~-~--g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
.+.|+||..||.... + ..+.. ..+..|. -+.+...+.+.+....+.+++++.
T Consensus 492 g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS 553 (676)
T TIGR02632 492 GGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIAS 553 (676)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 368999999996432 1 11211 1222332 334566666666554555555544
No 264
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.21 E-value=0.021 Score=53.93 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=63.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
++||++||+ |+||.+++..|...+. ..+|+..|.++.... ++.+.. +..+ ++|..++...+|+||++.
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~~-g~~~-----~~~~~~~~~~advv~Lav- 70 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAEY-GVVT-----TTDNQEAVEEADVVFLAV- 70 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHHc-CCcc-----cCcHHHHHhhCCEEEEEe-
Confidence 579999998 9999999999988872 368888887652222 233222 1121 233457889999999986
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d 149 (358)
|| ..+.++.+.++...++..+|.+.-.+.
T Consensus 71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~ 99 (266)
T COG0345 71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS 99 (266)
T ss_pred ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence 33 245566667766445666666655553
No 265
>PLN02780 ketoreductase/ oxidoreductase
Probab=96.20 E-value=0.055 Score=52.39 Aligned_cols=117 Identities=17% Similarity=0.250 Sum_probs=65.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe--cCCcc-------ccccC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM--GNDQL-------GQALE 95 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~--~~~d~-------~~al~ 95 (358)
....+.|+||+|++|..++..|+..|. +|+++|+++ .+....++.......++..+. -++|. .+.+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~ 129 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIE 129 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhc
Confidence 356899999999999999999999887 899999876 233334443321111222211 11111 12233
Q ss_pred --CCCEEEEcCCCCCC---C--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314 96 --DSDVVIIPAGVPRK---P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 96 --~aDiVIi~ag~~~~---~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
|.|++|..||.... + +.+. .+.+..|.. ..+.+.+.+.+.. .+.+++++.
T Consensus 130 ~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS 193 (320)
T PLN02780 130 GLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGAIINIGS 193 (320)
T ss_pred CCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence 45589999986421 1 2222 234455544 3444555554443 455666654
No 266
>PRK07814 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.069 Score=49.65 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=67.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCccc---cc-------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---QA------- 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a------- 93 (358)
+.+++.|+||+|++|.+++..|+..+. +|++.|++.. .....++.... .++.... +-++.. ++
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999998886 9999998652 22223332211 1233221 112211 11
Q ss_pred cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeCC
Q 018314 94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 94 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tNP 147 (358)
+...|+||..||..... ..+. .+.+..|.... +...+.+.+..+.+.+++++.-
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~ 148 (263)
T PRK07814 85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISST 148 (263)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccc
Confidence 23689999999853211 1222 23344554433 4444444444555667766653
No 267
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.20 E-value=0.011 Score=58.99 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=46.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC-CCccEEEEecCCccccccCCCCEEEEcC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
..++||+|+||+|.+|..+...|..++. .+|.++..+...++.....+.. ....+.... ..+ .++++++|+|+++.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al 112 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL 112 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence 4667999999999999999999888863 3888887654223221111100 000111011 111 23478999999975
Q ss_pred C
Q 018314 105 G 105 (358)
Q Consensus 105 g 105 (358)
+
T Consensus 113 p 113 (381)
T PLN02968 113 P 113 (381)
T ss_pred C
Confidence 3
No 268
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.19 E-value=0.017 Score=58.97 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=58.6
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcC-CCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-NTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~-~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~ 108 (358)
+|+|||. |.||.+++..|+..++ +|+.||+++.. ..++.+. .....+.......++.+.++++|+|+++.
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v---- 71 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMV---- 71 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEEC----
Confidence 4899997 9999999999999998 89999987522 2223221 00011222211123333556899988875
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCC
Q 018314 109 KPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNP 147 (358)
Q Consensus 109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP 147 (358)
+++ +.+.++...+..+ .++.++|-.+|-
T Consensus 72 ~~~-----------~~v~~Vi~~l~~~L~~g~iIID~gns 100 (467)
T TIGR00873 72 KAG-----------APVDAVINQLLPLLEKGDIIIDGGNS 100 (467)
T ss_pred CCc-----------HHHHHHHHHHHhhCCCCCEEEECCCc
Confidence 122 2223333444444 366778878763
No 269
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.19 E-value=0.029 Score=55.01 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
..||.|+|+ |.+|+.++..|+..|+ .+|.|+|.+.
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY 58 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence 458999998 9999999999999985 6999999874
No 270
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.19 E-value=0.022 Score=55.71 Aligned_cols=94 Identities=21% Similarity=0.301 Sum_probs=60.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
.-..++|+|||. |.+|+.+|..+...+. +|..||......... .. . ... .++.+.+++||+|++..
T Consensus 147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~--~~-~----~~~----~~l~ell~~aDiV~l~l 212 (333)
T PRK13243 147 DVYGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAEK--EL-G----AEY----RPLEELLRESDFVSLHV 212 (333)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHH--Hc-C----CEe----cCHHHHHhhCCEEEEeC
Confidence 345679999997 9999999999987775 899999864221111 11 1 111 24567899999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
|..+ .+..++.+ +.+....|++++|+++
T Consensus 213 --P~t~---------~T~~~i~~--~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 213 --PLTK---------ETYHMINE--ERLKLMKPTAILVNTA 240 (333)
T ss_pred --CCCh---------HHhhccCH--HHHhcCCCCeEEEECc
Confidence 2211 12222211 3444456788888874
No 271
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.18 E-value=0.074 Score=49.03 Aligned_cols=115 Identities=19% Similarity=0.247 Sum_probs=65.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccc-------c
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------A 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------a 93 (358)
+.+++.|+||+|.+|..++..|+..+. +|++.+.+.. +....++.+.. .++..+. +-+| ..+ .
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999887 8999998652 22233333221 1222221 1111 111 2
Q ss_pred cCCCCEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEee
Q 018314 94 LEDSDVVIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 94 l~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~t 145 (358)
+...|++|..+|..... ..+.. ..+..|+. +.+.+.+.+.+....+.+++++
T Consensus 84 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s 145 (253)
T PRK05867 84 LGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA 145 (253)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 34789999999864311 12222 23344443 4455555555444345555553
No 272
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=96.17 E-value=0.03 Score=56.77 Aligned_cols=128 Identities=19% Similarity=0.311 Sum_probs=76.7
Q ss_pred eEEEEcCCCChHHH-HHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314 30 KVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (358)
Q Consensus 30 KI~IiGA~G~vG~~-~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~ 108 (358)
+|.++|. |..|.+ +|..|...|. +|..+|..... ...+|.... ++.+.+ .+ .+.++++|+||.+.|+|.
T Consensus 1 ~~~~iGi-ggsGm~~la~~L~~~G~--~v~~~D~~~~~-~~~~l~~~g----i~~~~g-~~-~~~~~~~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGI-GGIGMSGIAEILLNRGY--QVSGSDIAENA-TTKRLEALG----IPIYIG-HS-AENLDDADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEE-CHHHHHHHHHHHHHCCC--eEEEECCCcch-HHHHHHHCc----CEEeCC-CC-HHHCCCCCEEEECCCCCC
Confidence 5889998 999987 8999998887 89999976533 223344322 333322 22 346788999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC--CcchHHHHHHHHHhCCCCCCce
Q 018314 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV--NSTVPIAAEVFKKAGTYNEKKL 170 (358)
Q Consensus 109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~--d~~t~~~~~~~~~sg~~~~~kv 170 (358)
..-. .......+++++.+.-- +.+...+..+|-+|=.. ..+|.+++++++..| +++.-+
T Consensus 71 ~~p~-~~~a~~~~i~v~~~~el-~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g-~~~~~~ 131 (448)
T TIGR01082 71 DNPE-IVEAKERGIPVIRRAEM-LAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG-LDPTVV 131 (448)
T ss_pred CCHH-HHHHHHcCCceEeHHHH-HHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC-CCCeEE
Confidence 3211 22223455666543322 21222122344454444 478888888888887 544333
No 273
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.16 E-value=0.029 Score=51.73 Aligned_cols=35 Identities=34% Similarity=0.567 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
..||.|+|+ |.+|+.++..|+..|+ .++.|+|.+.
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV 55 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 459999998 9999999999999985 6999999764
No 274
>PLN02712 arogenate dehydrogenase
Probab=96.16 E-value=0.029 Score=59.82 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=48.6
Q ss_pred ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC-CCCE
Q 018314 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDV 99 (358)
Q Consensus 21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~-~aDi 99 (358)
.|..+.+++||+|||. |.||..++..|...+. +|+.||.+.....+.++ . +..+ +++.+.+. ++|+
T Consensus 362 ~~~~~~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~---G----v~~~---~~~~el~~~~aDv 428 (667)
T PLN02712 362 GCVNDGSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL---G----VSYF---SDADDLCEEHPEV 428 (667)
T ss_pred hccCCCCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc---C----CeEe---CCHHHHHhcCCCE
Confidence 4455567789999997 9999999999988775 89999987522222211 1 1222 34445454 5999
Q ss_pred EEEcC
Q 018314 100 VIIPA 104 (358)
Q Consensus 100 VIi~a 104 (358)
||++.
T Consensus 429 VILav 433 (667)
T PLN02712 429 ILLCT 433 (667)
T ss_pred EEECC
Confidence 99985
No 275
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.16 E-value=0.043 Score=53.20 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=61.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
...++|+|+|. |.||+.++..|..-+. +|..||....... . +..+....++.+.+++||+|+++.-
T Consensus 134 l~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~~-------~----~~~~~~~~~l~e~l~~aDvvv~~lP 199 (312)
T PRK15469 134 REDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSWP-------G----VQSFAGREELSAFLSQTRVLINLLP 199 (312)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCCC-------C----ceeecccccHHHHHhcCCEEEECCC
Confidence 34579999997 9999999999987666 8999997531100 0 1111112356788999999999852
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
. . ..|..++. .+.+++..|++++|+++-
T Consensus 200 l----t-------~~T~~li~--~~~l~~mk~ga~lIN~aR 227 (312)
T PRK15469 200 N----T-------PETVGIIN--QQLLEQLPDGAYLLNLAR 227 (312)
T ss_pred C----C-------HHHHHHhH--HHHHhcCCCCcEEEECCC
Confidence 1 1 13333332 345566668888887753
No 276
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.16 E-value=0.014 Score=55.90 Aligned_cols=77 Identities=21% Similarity=0.391 Sum_probs=50.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHH-----------Hh-hcCCCCccEEEEecCCccccc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAA-----------DV-GHINTRSEVAGYMGNDQLGQA 93 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~-----------dl-~~~~~~~~v~~~~~~~d~~~a 93 (358)
++||+-||| |.||......+++.=+.-++.++|++... ++-- |. .++. ..++- + ++|.+.+
T Consensus 1 ~~kicciga-gyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~cr-gknlf-f--stdieka 75 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCR-GKNLF-F--STDIEKA 75 (481)
T ss_pred CceEEEecC-cccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhc-CCcee-e--ecchHHH
Confidence 469999998 99998876666554333499999997621 1100 01 1111 12333 3 4688999
Q ss_pred cCCCCEEEEcCCCCCC
Q 018314 94 LEDSDVVIIPAGVPRK 109 (358)
Q Consensus 94 l~~aDiVIi~ag~~~~ 109 (358)
++.||+|++....|.|
T Consensus 76 i~eadlvfisvntptk 91 (481)
T KOG2666|consen 76 IKEADLVFISVNTPTK 91 (481)
T ss_pred hhhcceEEEEecCCcc
Confidence 9999999998877754
No 277
>PRK08589 short chain dehydrogenase; Validated
Probab=96.16 E-value=0.1 Score=48.91 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=65.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEe-cCCc---ccc-------ccC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------ALE 95 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al~ 95 (358)
.+++.|+||+|.+|..++..|+..+. +|++.+.++ ......++.+.. .++..+. +-+| ..+ .+.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999886 899999874 223333443321 1222211 1111 111 123
Q ss_pred CCCEEEEcCCCCCCC----CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314 96 DSDVVIIPAGVPRKP----GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV 148 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~----g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~ 148 (358)
..|++|..||..... ..+.. ..+..|+ .+.+.+.+.+.+. .+.||+++...
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~~ 143 (272)
T PRK08589 82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSFS 143 (272)
T ss_pred CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCchh
Confidence 579999999874321 11221 2233343 4445666666543 36677666543
No 278
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.15 E-value=0.087 Score=48.20 Aligned_cols=156 Identities=11% Similarity=0.079 Sum_probs=79.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cC---CccccccC-------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GN---DQLGQALE------- 95 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~------- 95 (358)
+.++|.|+||+|++|+.++..|+..+. ++++.+.+... ...++.+.. ..++..+. +- +++.++++
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~~~~-~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQSED-AAEALADEL-GDRAIALQADVTDREQVQAMFATATEHFG 79 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCCCHH-HHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 345899999999999999999998886 78776544311 111111110 01222221 11 12222232
Q ss_pred C-CCEEEEcCCCCC-------CC--CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHH
Q 018314 96 D-SDVVIIPAGVPR-------KP--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV 158 (358)
Q Consensus 96 ~-aDiVIi~ag~~~-------~~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~ 158 (358)
. .|++|..+|... .+ ..+.. +.+..|.. +.+.+.+.+.+. ..+.+++++.....
T Consensus 80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~iss~~~~-------- 150 (253)
T PRK08642 80 KPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQ-GFGRIINIGTNLFQ-------- 150 (253)
T ss_pred CCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-CCeEEEEECCcccc--------
Confidence 2 899999987521 11 12222 23445544 444444444433 23566666654311
Q ss_pred HHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314 159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (358)
Q Consensus 159 ~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 201 (358)
.+ .++.-.++.+......+-+.+++.++ +..|++..+
T Consensus 151 ---~~-~~~~~~Y~~sK~a~~~l~~~la~~~~--~~~i~v~~i 187 (253)
T PRK08642 151 ---NP-VVPYHDYTTAKAALLGLTRNLAAELG--PYGITVNMV 187 (253)
T ss_pred ---CC-CCCccchHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence 11 22233455544444566677777664 445655433
No 279
>PRK05650 short chain dehydrogenase; Provisional
Probab=96.15 E-value=0.062 Score=50.10 Aligned_cols=114 Identities=20% Similarity=0.181 Sum_probs=64.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---ccc-------cC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA-------LE 95 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l~ 95 (358)
++|.|+||+|++|..++..|+..+. +|++.|.+.. .....++.... .++.... +..|. .+. +.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3799999999999999999999887 8999997652 22223343222 1222211 11221 111 24
Q ss_pred CCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 96 DSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
..|+||..+|..... ..+. ...+..|. .+.+.+.+.+++.. .+.+++++..
T Consensus 77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS~ 137 (270)
T PRK05650 77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIASM 137 (270)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECCh
Confidence 689999999864321 1222 22345553 44555666666554 3455555443
No 280
>PRK09135 pteridine reductase; Provisional
Probab=96.13 E-value=0.056 Score=49.21 Aligned_cols=104 Identities=22% Similarity=0.211 Sum_probs=59.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------ 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------ 94 (358)
.++|.|+||+|++|++++..|+..+. +++++|.+. ......++.+... ..+.... +-+| ..+++
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999998887 899999753 2222233332211 1122211 1112 11222
Q ss_pred -CCCCEEEEcCCCCC--CCC-CC---HHHHHHHHHHHHHHHHHHHHh
Q 018314 95 -EDSDVVIIPAGVPR--KPG-MT---RDDLFNINAGIVKDLCSAIAK 134 (358)
Q Consensus 95 -~~aDiVIi~ag~~~--~~g-~~---r~~~~~~N~~i~~~i~~~i~~ 134 (358)
.+.|+||.++|... ... .+ -.+.+..|+.-...+.+.+.+
T Consensus 83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~ 129 (249)
T PRK09135 83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAP 129 (249)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHH
Confidence 35799999998532 111 12 234555666655555555443
No 281
>PRK07060 short chain dehydrogenase; Provisional
Probab=96.13 E-value=0.028 Score=51.19 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=63.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCcccccc---CCCCEEE
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQAL---EDSDVVI 101 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al---~~aDiVI 101 (358)
.+.+++.|+||+|.+|..++..++..+. +|++++.+.... .++.+.....-+..- +...++.+.+ ...|+||
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi 82 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAAL--DRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLV 82 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEE
Confidence 3456899999999999999999999887 899999865211 112111000011110 0011122222 3579999
Q ss_pred EcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhh----CCCeEEEEeeC
Q 018314 102 IPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN 146 (358)
Q Consensus 102 i~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~----~p~a~iiv~tN 146 (358)
..+|..... ..+. ...+..|+.-...+.+.+.+. +..+.+++++.
T Consensus 83 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 137 (245)
T PRK07060 83 NCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS 137 (245)
T ss_pred ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence 999864311 1222 223445555444444444432 22355665553
No 282
>PRK08223 hypothetical protein; Validated
Probab=96.12 E-value=0.019 Score=54.83 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=31.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+..||.|+|+ |++|+.++..|+..|+ .+|.|+|-+.
T Consensus 26 ~~s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV 61 (287)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence 3458999998 9999999999999996 5999999874
No 283
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=96.12 E-value=0.11 Score=47.64 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=66.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCC--c----------c
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GND--Q----------L 90 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~--d----------~ 90 (358)
.+.++|.|+||+|++|..++..|+..+. +|+++|++. ......++.+... .++.... +-+ + +
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHH
Confidence 3566899999999999999999998876 899999875 2233344443221 1122111 000 1 1
Q ss_pred ccccCCCCEEEEcCCCCCC--C--CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeC
Q 018314 91 GQALEDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 91 ~~al~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tN 146 (358)
.+.+...|+||..||.... + ..+. ...+..|..- .+.+.+.+.+. +...+++++.
T Consensus 87 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~-~~~~iv~~ss 152 (247)
T PRK08945 87 EEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKS-PAASLVFTSS 152 (247)
T ss_pred HHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC-CCCEEEEEcc
Confidence 2233468999999986321 1 2222 2345556554 34444444433 3445555554
No 284
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=96.12 E-value=0.035 Score=51.14 Aligned_cols=118 Identities=12% Similarity=0.137 Sum_probs=67.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCC---cccccc-----
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GND---QLGQAL----- 94 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al----- 94 (358)
.+.++|.|+||+|.+|..++..|+..+. .|+++|.++ ......++.... .++.... +-+ ++.+++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998886 899999875 223333343221 1122211 111 222222
Q ss_pred --CCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHH----HHHHhhCCCeEEEEeeCCC
Q 018314 95 --EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNPV 148 (358)
Q Consensus 95 --~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~----~~i~~~~p~a~iiv~tNP~ 148 (358)
...|+||.++|.... + ..+. ...+..|..-...+. +.+.+.. .+.+++++...
T Consensus 85 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~ss~~ 149 (256)
T PRK06124 85 EHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQG-YGRIIAITSIA 149 (256)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEeech
Confidence 345899999986321 1 1222 223555655444444 4444333 45666666654
No 285
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.12 E-value=0.015 Score=52.02 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=48.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe--cCCccccccCCCCEEEE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVII 102 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVIi 102 (358)
+.+++.|+||+|.+|..++..|+..+. ++++++++.. .....++.+.. ...+.... ...++.++++++|+||.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 456999999889999999999988775 8999987652 22222332111 12233221 11233477899998888
Q ss_pred cCC
Q 018314 103 PAG 105 (358)
Q Consensus 103 ~ag 105 (358)
+..
T Consensus 104 at~ 106 (194)
T cd01078 104 AGA 106 (194)
T ss_pred CCC
Confidence 653
No 286
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=96.12 E-value=0.048 Score=49.59 Aligned_cols=114 Identities=24% Similarity=0.337 Sum_probs=63.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccc-------cc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------AL 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al 94 (358)
.+++.|+||+|.+|..++..|+..+. .+++.+.+.. .....++. .++..+. +-+| +.+ .+
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEADL 78 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999998886 7888876542 22222221 1222211 1111 111 13
Q ss_pred CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCCC
Q 018314 95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV 148 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP~ 148 (358)
...|+||.++|..... ..+ -...+..|+.....+++.+.+. .+.+.+++++...
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 141 (245)
T PRK12936 79 EGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVV 141 (245)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHH
Confidence 4689999999864311 111 2234555655544444433221 2345666666543
No 287
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.12 E-value=0.047 Score=50.13 Aligned_cols=96 Identities=22% Similarity=0.302 Sum_probs=67.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~ 107 (358)
+||+|||+ |.+|..+.-.+-..+ .+.-+.+||.+..+.. .+...-..... .++.+.+.+.|+||.+|+
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~--~~~~~~~~~~~------s~ide~~~~~DlvVEaAS-- 69 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAK--ELEASVGRRCV------SDIDELIAEVDLVVEAAS-- 69 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHH--HHHhhcCCCcc------ccHHHHhhccceeeeeCC--
Confidence 58999998 999999988877664 3556778887653322 23322111111 245566799999999985
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (358)
Q Consensus 108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d 149 (358)
.+.+++++.++=+.+.|.+++.++-=+|
T Consensus 70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad 97 (255)
T COG1712 70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD 97 (255)
T ss_pred --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence 5678999999999999988776655554
No 288
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.10 E-value=0.019 Score=55.06 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=45.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
|||+|||. |.||..++..|...++ ++..||+++. ..++.... .... .+..++.++||+||++.
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g----~~~~---~s~~~~~~~advVi~~v 63 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG----AVSV---ETARQVTEASDIIFIMV 63 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC----Ceec---CCHHHHHhcCCEEEEeC
Confidence 48999997 9999999999999887 8889998652 12232211 1111 23456789999999985
No 289
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.10 E-value=0.031 Score=52.43 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=79.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCC---------CcEEEEEecCCc--H------HHHHHhhcCCCCccEEEEecCC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPL---------VSRLALYDIANT--P------GVAADVGHINTRSEVAGYMGND 88 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~---------~~ei~L~D~~~~--~------~~~~dl~~~~~~~~v~~~~~~~ 88 (358)
-+..||.|.|| |..|..++.+|..... -..++++|..-. . .....+.+.. +.. ....
T Consensus 23 l~d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~-~~~----~~~~ 96 (254)
T cd00762 23 ISEHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFA-NPE----RESG 96 (254)
T ss_pred hhhcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHc-Ccc----cccC
Confidence 34459999998 9999999887766432 138999998641 0 1111111011 101 0125
Q ss_pred ccccccC--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhCC
Q 018314 89 QLGQALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGT 164 (358)
Q Consensus 89 d~~~al~--~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg~ 164 (358)
|+.++++ ++|++|=+.+.| | -+-+++.+.|.+++++.+|+-.|||.. -.++ .++++.+
T Consensus 97 ~L~eav~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp--e~a~~~t-- 158 (254)
T cd00762 97 DLEDAVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAECTA--EEAYTAT-- 158 (254)
T ss_pred CHHHHHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCH--HHHHhhc--
Confidence 7889999 999988876544 2 134677888888999999998999986 3433 2335443
Q ss_pred CCCCceEeec
Q 018314 165 YNEKKLFGVT 174 (358)
Q Consensus 165 ~~~~kviG~t 174 (358)
+.+.+++..
T Consensus 159 -~G~ai~AtG 167 (254)
T cd00762 159 -EGRAIFASG 167 (254)
T ss_pred -CCCEEEEEC
Confidence 135788884
No 290
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.10 E-value=0.015 Score=56.67 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=58.7
Q ss_pred hhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEE
Q 018314 6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG 83 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~ 83 (358)
+-..+|=+-.+.+.++++.+ ...+++|||+ |..+...+..+.....+.+|.+|+++. +...+.++.+.. ...+..
T Consensus 108 lT~~RTaa~~~laa~~la~~-~~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~ 184 (326)
T TIGR02992 108 LTDVRTAAAGAVAARHLARE-DSSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA 184 (326)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CCcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE
Confidence 33444444444444444333 3468999998 999988888776444467999999876 334444453221 123333
Q ss_pred EecCCccccccCCCCEEEEcC
Q 018314 84 YMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 84 ~~~~~d~~~al~~aDiVIi~a 104 (358)
.+++++++.+||+||.+-
T Consensus 185 ---~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 185 ---ATDPRAAMSGADIIVTTT 202 (326)
T ss_pred ---eCCHHHHhccCCEEEEec
Confidence 246678899999999864
No 291
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.09 E-value=0.035 Score=51.86 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=31.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+..||+|+|+ |++|+.++..|+..|+ .+|.++|.+.
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 3569999998 9999999999999985 6999999864
No 292
>PRK06181 short chain dehydrogenase; Provisional
Probab=96.08 E-value=0.07 Score=49.33 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=65.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---ccc-------cC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA-------LE 95 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l~ 95 (358)
++|.|+||+|++|..++..|+..+. +|++.|.+.. .....++.... .++..+. +-.|. .++ +.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999988886 8999998752 22233343322 2333222 11221 111 23
Q ss_pred CCCEEEEcCCCCCCC---CC-CH---HHHHHHHHHHHHHHHHHHHhhC--CCeEEEEeeCCC
Q 018314 96 DSDVVIIPAGVPRKP---GM-TR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNPV 148 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~---g~-~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~iiv~tNP~ 148 (358)
+.|+||.++|..... .. +. ...+..|..-...+.+.+.++- ..+.+++++...
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~ 139 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLA 139 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccc
Confidence 679999999864321 11 22 2234555555444444443321 235566665544
No 293
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.08 E-value=0.014 Score=57.05 Aligned_cols=66 Identities=30% Similarity=0.401 Sum_probs=46.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+-..++|+|||. |.+|..++..|+. ++.-+|+.||....... .. .+.. .+++.+++++||+|+++.
T Consensus 143 ~l~g~~VgIIG~-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~----~~-----~~~~---~~~l~ell~~aDvIvl~l 208 (332)
T PRK08605 143 SIKDLKVAVIGT-GRIGLAVAKIFAK-GYGSDVVAYDPFPNAKA----AT-----YVDY---KDTIEEAVEGADIVTLHM 208 (332)
T ss_pred eeCCCEEEEECC-CHHHHHHHHHHHh-cCCCEEEEECCCccHhH----Hh-----hccc---cCCHHHHHHhCCEEEEeC
Confidence 345679999998 9999999998853 44448999997642211 11 1121 235678899999999985
No 294
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.07 E-value=0.035 Score=54.19 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=45.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+.+||+|||. |.+|.+++..|...+. +|+.++.+....... ..... +.. .+..+++++||+|+++.
T Consensus 16 ~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~~~-A~~~G----~~~----~s~~eaa~~ADVVvLaV 81 (330)
T PRK05479 16 KGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSWKK-AEADG----FEV----LTVAEAAKWADVIMILL 81 (330)
T ss_pred CCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhHHH-HHHCC----Cee----CCHHHHHhcCCEEEEcC
Confidence 4569999998 9999999999998887 888887654211111 11111 121 13467899999999985
No 295
>PRK06101 short chain dehydrogenase; Provisional
Probab=96.07 E-value=0.12 Score=47.22 Aligned_cols=112 Identities=19% Similarity=0.188 Sum_probs=62.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe----cCCccccccCC----CCEE
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALED----SDVV 100 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~----aDiV 100 (358)
.+|.|+||+|++|..++..|+..+. +|++.|+++... .++.+... ++..+. ..+++.++++. -|.+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~d~~ 75 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSA--NIFTLAFDVTDHPGTKAALSQLPFIPELW 75 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcC--CCeEEEeeCCCHHHHHHHHHhcccCCCEE
Confidence 5799999999999999999998886 899999865211 11111110 111111 11222223332 4788
Q ss_pred EEcCCCCCCC--C-CCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314 101 IIPAGVPRKP--G-MTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN 146 (358)
Q Consensus 101 Ii~ag~~~~~--g-~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN 146 (358)
|+.+|..... . .+. .+.+.-|..-...+.+.+..+- +...+++++.
T Consensus 76 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS 128 (240)
T PRK06101 76 IFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS 128 (240)
T ss_pred EEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence 8888743211 1 222 2346667666666666555432 3345565554
No 296
>PRK05855 short chain dehydrogenase; Validated
Probab=96.06 E-value=0.079 Score=54.62 Aligned_cols=118 Identities=16% Similarity=0.190 Sum_probs=70.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---ccc-------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA------- 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a------- 93 (358)
+.+++.|+||+|++|..++..|+..+. +|++.|.+.. ...+.++..... ++..+. +-+|. .+.
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999887 8999998752 222333332211 222221 11221 111
Q ss_pred cCCCCEEEEcCCCCCCC---CCCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314 94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPV 148 (358)
Q Consensus 94 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~ 148 (358)
+...|++|..||..... ..+. ...+..| +...+.+.+.+.+....+.||++|.-.
T Consensus 390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~ 454 (582)
T PRK05855 390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAA 454 (582)
T ss_pred cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence 23579999999974321 1222 2234455 345566666676666566677665543
No 297
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.06 E-value=0.05 Score=50.12 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.+++.|+||+|++|..++..|+..+. ++++.|.+.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~ 43 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITA 43 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCH
Confidence 45899999999999999999998886 899999875
No 298
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.06 E-value=0.013 Score=58.25 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=63.6
Q ss_pred hhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHh-CCCCcEEEEEecCC--cHHHHHHhhcCCCC-cc
Q 018314 5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN--TPGVAADVGHINTR-SE 80 (358)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~-~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~ 80 (358)
.|-.++|-|--+-+-++++.+ ....++|||+ |..+.+-+..++. .+.+.+|.+||++. +...+.++.+.... ..
T Consensus 133 ~lTa~RTaA~salaa~~LAr~-da~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~ 210 (379)
T PRK06199 133 LLSAYRTGAVPGVGARHLARK-DSKVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITN 210 (379)
T ss_pred chhhhHHHHHHHHHHHHhccC-CCCEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCce
Confidence 344555655555555666544 4568999997 9888877776665 44478999999987 34555566543211 13
Q ss_pred EEEEecCCccccccCCCCEEEEcC
Q 018314 81 VAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 81 v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+... ++.++++++||+|+.+-
T Consensus 211 v~~~---~s~~eav~~ADIVvtaT 231 (379)
T PRK06199 211 VEVV---DSIEEVVRGSDIVTYCN 231 (379)
T ss_pred EEEe---CCHHHHHcCCCEEEEcc
Confidence 5543 45689999999998753
No 299
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.06 E-value=0.15 Score=49.58 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=66.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA------- 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------- 93 (358)
+.++|.|+||+|.+|..++..|+..+. +|++.+.++ ......++.... .++.... +-+| .+++
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999886 899999865 222333343222 1222211 1122 2122
Q ss_pred cCCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 94 LEDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 94 l~~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
+...|++|..+|..... ..+.. ..+..| +...+.+.+.+.+.. .+.+|+++.
T Consensus 83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS 144 (334)
T PRK07109 83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGS 144 (334)
T ss_pred CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence 23689999999863211 12221 223333 445566666666543 355665554
No 300
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.05 E-value=0.097 Score=47.66 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=65.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------- 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------- 94 (358)
.+++.|+||+|.+|..++..|+..+. +|++.+++.. .....++.... .++.... +-+| +.+++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999998887 8999998752 22223343211 2333322 1111 12222
Q ss_pred CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCC
Q 018314 95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV 148 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~ 148 (358)
.+.|+||.++|..... +.+. ...+..|..- .+.+.+.+.+.. .+.+++++...
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~ss~~ 145 (239)
T PRK07666 83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQ-SGDIINISSTA 145 (239)
T ss_pred CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CcEEEEEcchh
Confidence 3789999999864321 1221 2334555543 344444443333 34455555543
No 301
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.05 E-value=0.031 Score=52.30 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=44.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
|||+|||+ |.+|.+++..|...++ ..++.++|.+... ..++.+.. ..+..+ +|..+.+++||+||++.
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~~---~~~~~~~~~aDvVilav 69 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRIA---KDNQAVVDRSDVVFLAV 69 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceEe---CCHHHHHHhCCEEEEEe
Confidence 58999997 9999999999888764 3467788875422 22222211 012222 23456678999999986
No 302
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.05 E-value=0.11 Score=47.84 Aligned_cols=157 Identities=15% Similarity=0.180 Sum_probs=84.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA------- 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------- 93 (358)
+.+++.|+||+|.+|..++..|+..+. +|++.+.++ ......++.+.. .++..+. +-.| ..+.
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 345899999999999999999999887 899999865 222333443322 1222221 1111 1111
Q ss_pred cCCCCEEEEcCCCCC--CC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314 94 LEDSDVVIIPAGVPR--KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA 162 (358)
Q Consensus 94 l~~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~s 162 (358)
+...|++|..||... .+ ..+. ...+..|.. ..+.+.+.+.+.. .+.+++++...... .
T Consensus 81 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS~~~~~----------~ 149 (254)
T PRK07478 81 FGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTSTFVGHT----------A 149 (254)
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEechHhhc----------c
Confidence 236799999998632 22 2222 234556653 5555566665543 34556555432110 1
Q ss_pred CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314 163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (358)
Q Consensus 163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 201 (358)
+ .+..-.++.+......+-..+++.++ +..|++..+
T Consensus 150 ~-~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v 185 (254)
T PRK07478 150 G-FPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVNAL 185 (254)
T ss_pred C-CCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence 1 33333344443323445566666653 445655444
No 303
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.04 E-value=0.04 Score=55.71 Aligned_cols=126 Identities=24% Similarity=0.322 Sum_probs=76.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH---HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ 103 (358)
+.++|.|+|+ |.+|..+|..|+..|. +|+++|.+... ....+|.... ++.+.+. ...+...++|+||.+
T Consensus 4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~~----~~~~~~~-~~~~~~~~~d~vv~~ 75 (450)
T PRK14106 4 KGKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGELG----IELVLGE-YPEEFLEGVDLVVVS 75 (450)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC----CEEEeCC-cchhHhhcCCEEEEC
Confidence 3468999998 8899999999999997 89999997522 1123332211 2222211 112446789999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG 163 (358)
Q Consensus 104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg 163 (358)
+|.+...- .....-..+++++...+...+... ..+|-+|=.++ .++.+++++++..|
T Consensus 76 ~g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~~--~~vI~ITGS~GKTTt~~~l~~iL~~~g 134 (450)
T PRK14106 76 PGVPLDSP-PVVQAHKKGIEVIGEVELAYRFSK--APIVAITGTNGKTTTTTLLGEIFKNAG 134 (450)
T ss_pred CCCCCCCH-HHHHHHHCCCcEEeHHHHHHhhcC--CCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 88742211 111222356777766665444332 34555655554 67777777777665
No 304
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.03 E-value=0.1 Score=47.38 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEE-ecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~-D~~~ 64 (358)
+++|.|+||+|.+|..++..|+..+. ++++. +.+.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~ 40 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINE 40 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence 45899999999999999999988876 77777 8765
No 305
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.02 E-value=0.055 Score=55.09 Aligned_cols=125 Identities=18% Similarity=0.293 Sum_probs=76.1
Q ss_pred CCceEEEEcCCCChHHH-HHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~-~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
+.+||.|+|. |..|.+ +|..|...|. +|...|.+... ...+|.... +..+.+. + .+.+.++|+||.+.|
T Consensus 6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~g----i~~~~~~-~-~~~~~~~d~vv~spg 75 (461)
T PRK00421 6 RIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLELG----AIIFIGH-D-AENIKDADVVVYSSA 75 (461)
T ss_pred CCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHCC----CEEeCCC-C-HHHCCCCCEEEECCC
Confidence 3458999998 999998 7889998887 89999987532 222354322 2222222 2 356789999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG 163 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg 163 (358)
+|...-. ......++++++.+.-- +.+..++..+|-+|=..+ .+|.+++++++..|
T Consensus 76 i~~~~~~-~~~a~~~~i~i~~~~e~-~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 76 IPDDNPE-LVAARELGIPVVRRAEM-LAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred CCCCCHH-HHHHHHCCCcEEeHHHH-HHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 8753221 12223455666543222 111211223455554444 78888888888877
No 306
>PRK06197 short chain dehydrogenase; Provisional
Probab=96.02 E-value=0.085 Score=50.28 Aligned_cols=118 Identities=20% Similarity=0.129 Sum_probs=66.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---cc-------c
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQ-------A 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a 93 (358)
+.++|.|+||+|++|..++..|+..+. +|++.+++.. .....++.......++..+. +-.|. .+ .
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 346899999999999999999999886 8999987652 11222332111111233221 11121 11 1
Q ss_pred cCCCCEEEEcCCCCCCC-C---CCHHHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 94 LEDSDVVIIPAGVPRKP-G---MTRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 94 l~~aDiVIi~ag~~~~~-g---~~r~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
+...|+||..||....+ . ..-...+..|.. +.+.+.+.+++.. .+.+|+++..
T Consensus 93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS~ 153 (306)
T PRK06197 93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSSG 153 (306)
T ss_pred CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECCH
Confidence 23589999999863211 1 111223444443 4666777766543 3456666543
No 307
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=96.02 E-value=0.072 Score=48.54 Aligned_cols=114 Identities=21% Similarity=0.251 Sum_probs=64.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEec-CCc---ccccc-------
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ---LGQAL------- 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~d---~~~al------- 94 (358)
+++|.|+||+|.+|..++..|..++. +|++++++.. .....++.... .++..+.. -.| +.+.+
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999999886 8999998742 22222333221 12333221 111 11222
Q ss_pred CCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHH----HHHhhCCCeEEEEeeC
Q 018314 95 EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCS----AIAKYCPNAIVNMISN 146 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~----~i~~~~p~a~iiv~tN 146 (358)
...|+||.++|.... + ..+. .+.+..|+.-...+.+ .+.+..+ ..+++++.
T Consensus 82 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~ss 142 (251)
T PRK12826 82 GRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGG-GRIVLTSS 142 (251)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEEec
Confidence 368999999876431 1 2222 2335555554444444 4444443 44554543
No 308
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.26 Score=45.95 Aligned_cols=117 Identities=11% Similarity=0.159 Sum_probs=68.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCC---cccccc------C
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GND---QLGQAL------E 95 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al------~ 95 (358)
.+.+.|+||+|.+|..++..|+..+. +|++.|++. ......++.... ..++..+. +-+ +..+.+ .
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 44789999999999999999999887 899999875 222233333211 11222221 111 222222 3
Q ss_pred CCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314 96 DSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPV 148 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~ 148 (358)
..|++|..+|.+... ..+.. ..+..| ..+.+.+.+.+++.. .+.||+++...
T Consensus 85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~~ 146 (263)
T PRK08339 85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSVA 146 (263)
T ss_pred CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCcc
Confidence 579999999865321 12222 223334 455677777776543 45666665543
No 309
>PRK06057 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.037 Score=51.06 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=31.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.++|.|+||+|++|.+++..++..+. +|+++|.+.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~ 41 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP 41 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 45899999999999999999998886 899999865
No 310
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.99 E-value=0.063 Score=54.95 Aligned_cols=125 Identities=16% Similarity=0.178 Sum_probs=78.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHh-hcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV-GHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl-~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~ 106 (358)
++||.|+|+ |..|.+++..|...+. +|..+|.+.... .++ ... .++.+.+..+ .+.+.++|+||.+.|+
T Consensus 15 ~~~v~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~--~~~l~~~----gi~~~~~~~~-~~~~~~~d~vV~Spgi 84 (473)
T PRK00141 15 SGRVLVAGA-GVSGRGIAAMLSELGC--DVVVADDNETAR--HKLIEVT----GVADISTAEA-SDQLDSFSLVVTSPGW 84 (473)
T ss_pred CCeEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCChHHH--HHHHHhc----CcEEEeCCCc-hhHhcCCCEEEeCCCC
Confidence 348999997 9999999999998887 899999654221 122 221 2333322222 3457899999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHh-----hCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314 107 PRKPGMTRDDLFNINAGIVKDLCSAIAK-----YCPNAIVNMISNPVN--STVPIAAEVFKKAG 163 (358)
Q Consensus 107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~-----~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg 163 (358)
|...-. .......+++++.++.-.... +.....+|-+|=.++ .++.+++++++..|
T Consensus 85 ~~~~p~-~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 85 RPDSPL-LVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred CCCCHH-HHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 753321 223335667777666643332 221223555655555 78888888888877
No 311
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.99 E-value=0.011 Score=57.89 Aligned_cols=75 Identities=23% Similarity=0.328 Sum_probs=50.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEE
Q 018314 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI 101 (358)
Q Consensus 24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVI 101 (358)
|+.+.+||+|+||+|.+|..+...|...+. ..+|.++......|+...+... .+.... .| .++++++|+|+
T Consensus 1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~----~l~v~~--~~-~~~~~~~Divf 73 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR----EIIIQE--AK-INSFEGVDIAF 73 (347)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc----ceEEEe--CC-HHHhcCCCEEE
Confidence 345668999999999999999999986553 4568888766544444433321 233321 23 24578999999
Q ss_pred EcCC
Q 018314 102 IPAG 105 (358)
Q Consensus 102 i~ag 105 (358)
++++
T Consensus 74 ~a~~ 77 (347)
T PRK06728 74 FSAG 77 (347)
T ss_pred ECCC
Confidence 9764
No 312
>PRK08818 prephenate dehydrogenase; Provisional
Probab=95.98 E-value=0.036 Score=54.94 Aligned_cols=56 Identities=25% Similarity=0.287 Sum_probs=42.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
.++|+|||.+|.+|..++..|.... ..+|+-+|.. |.. ..++.+.+++||+||++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~----------d~~----------~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPA----------DPG----------SLDPATLLQRADVLIFSA 59 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCC----------ccc----------cCCHHHHhcCCCEEEEeC
Confidence 4699999977999999999998752 3489999863 100 123456789999999985
No 313
>PRK06138 short chain dehydrogenase; Provisional
Probab=95.97 E-value=0.12 Score=47.21 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=31.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+.+++.|+||+|.+|+.++..|+..+. +|++++.+.
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~ 39 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA 39 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence 456899999999999999999998886 899999765
No 314
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=95.96 E-value=0.12 Score=47.76 Aligned_cols=114 Identities=22% Similarity=0.223 Sum_probs=64.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------cC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LE 95 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~ 95 (358)
.+++.|+||+|++|.+++..|+..+. +|+++|+++. .....++.... .++.... +-+| ..+. +.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSELVHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchHHHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999886 8999998652 22222332211 1222111 1112 1111 24
Q ss_pred CCCEEEEcCCCCC--CC--CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 96 DSDVVIIPAGVPR--KP--GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 96 ~aDiVIi~ag~~~--~~--g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
..|++|..||... .+ ..+.. ..+..|+ .+.+.+.+.+.+... +.|++++.
T Consensus 84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~~sS 144 (260)
T PRK12823 84 RIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGG-GAIVNVSS 144 (260)
T ss_pred CCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEcC
Confidence 6799999998531 11 12222 2233443 345566666665443 45555544
No 315
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=95.94 E-value=0.041 Score=51.11 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=31.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+.+++.|+||+|++|..++..|+..+. +|++.|.++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 39 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA 39 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 356899999999999999999999887 899999765
No 316
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=95.94 E-value=0.079 Score=50.97 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=65.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------ 94 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------ 94 (358)
++++|.|+||+|++|..++..|+..+. +|++.+.+.. .....++.... .++.... +-.| ..+++
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIPP--DSYTIIHIDLGDLDSVRRFVDDFRAL 80 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhccC--CceEEEEecCCCHHHHHHHHHHHHHh
Confidence 345799999999999999999998885 8999997652 22233332111 1232221 1112 12222
Q ss_pred -CCCCEEEEcCCCCCC----CCCCH---HHHHHHHHH----HHHHHHHHHHhhCC-CeEEEEee
Q 018314 95 -EDSDVVIIPAGVPRK----PGMTR---DDLFNINAG----IVKDLCSAIAKYCP-NAIVNMIS 145 (358)
Q Consensus 95 -~~aDiVIi~ag~~~~----~g~~r---~~~~~~N~~----i~~~i~~~i~~~~p-~a~iiv~t 145 (358)
...|++|..||.... ...+. ...+..|.- +.+.+.+.+.+... .+.||+++
T Consensus 81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs 144 (322)
T PRK07453 81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG 144 (322)
T ss_pred CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence 248999999985321 12222 233455553 45555666655442 34566554
No 317
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.93 E-value=0.14 Score=46.86 Aligned_cols=35 Identities=37% Similarity=0.490 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.+++.|+||+|.+|..++..|+..+. +|+++|.++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~ 40 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINA 40 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999998886 899999875
No 318
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=95.93 E-value=0.015 Score=56.73 Aligned_cols=95 Identities=21% Similarity=0.296 Sum_probs=68.4
Q ss_pred hhhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccE
Q 018314 4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV 81 (358)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v 81 (358)
..|-+++|-|-.+-+-+++... ...-++|||+ |..+..-+..+...-.+.+|.+||+++ .+..+.++..... ..+
T Consensus 107 ~~lTa~RTaAasavAa~~LA~~-da~~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~-~~v 183 (330)
T COG2423 107 TRLTALRTAAASAVAAKYLARK-DASTLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGG-EAV 183 (330)
T ss_pred ccHHHHHHHHHHHHHHHHhccC-CCcEEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcC-ccc
Confidence 3456677777777777777775 3458999998 988888777777665578999999987 4455556654432 234
Q ss_pred EEEecCCccccccCCCCEEEEcC
Q 018314 82 AGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 82 ~~~~~~~d~~~al~~aDiVIi~a 104 (358)
.. .++.++++++||+|+.+-
T Consensus 184 ~a---~~s~~~av~~aDiIvt~T 203 (330)
T COG2423 184 GA---ADSAEEAVEGADIVVTAT 203 (330)
T ss_pred ee---ccCHHHHhhcCCEEEEec
Confidence 43 245689999999999863
No 319
>PRK07574 formate dehydrogenase; Provisional
Probab=95.92 E-value=0.05 Score=54.27 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=60.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
-..++|+|||. |.||+.++..|..-+. +|+-||+........ ... .+..+ .++++.++.||+|++..-
T Consensus 190 L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~--~~~----g~~~~---~~l~ell~~aDvV~l~lP 257 (385)
T PRK07574 190 LEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVE--QEL----GLTYH---VSFDSLVSVCDVVTIHCP 257 (385)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhH--hhc----Cceec---CCHHHHhhcCCEEEEcCC
Confidence 45679999998 9999999999886665 899999864211111 010 12221 346788999999999852
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
.. ..+..++- .+.+....|.+++|+++
T Consensus 258 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 258 LH-----------PETEHLFD--ADVLSRMKRGSYLVNTA 284 (385)
T ss_pred CC-----------HHHHHHhC--HHHHhcCCCCcEEEECC
Confidence 11 12222221 24445556788888774
No 320
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=95.92 E-value=0.11 Score=47.51 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=48.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc----------cccccC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ----------LGQALE 95 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al~ 95 (358)
++|.|+||+|.+|+.++..|...+. +|++++++.. .....++.... .++.... +-.| ..+.+.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4799999999999999999998887 8999998752 11222222211 1222221 1122 122356
Q ss_pred CCCEEEEcCCCC
Q 018314 96 DSDVVIIPAGVP 107 (358)
Q Consensus 96 ~aDiVIi~ag~~ 107 (358)
+.|+||..+|..
T Consensus 78 ~~d~vi~~a~~~ 89 (255)
T TIGR01963 78 GLDILVNNAGIQ 89 (255)
T ss_pred CCCEEEECCCCC
Confidence 789999999863
No 321
>PRK06398 aldose dehydrogenase; Validated
Probab=95.89 E-value=0.077 Score=49.27 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=79.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccc-------cccCCCCEE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLG-------QALEDSDVV 100 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~-------~al~~aDiV 100 (358)
.+++.|+||+|.+|.+++..|+..+. +|++.|.++..........+ ++. ..++.. +.+...|++
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----D~~---~~~~i~~~~~~~~~~~~~id~l 76 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFKV----DVS---NKEQVIKGIDYVISKYGRIDIL 76 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEEc----cCC---CHHHHHHHHHHHHHHcCCCCEE
Confidence 45899999999999999999999887 89999876521100000000 000 001111 123468999
Q ss_pred EEcCCCCCC-C--CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCce
Q 018314 101 IIPAGVPRK-P--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL 170 (358)
Q Consensus 101 Ii~ag~~~~-~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kv 170 (358)
|..||.+.. + ..+.. ..+..|.. +.+.+.+.+.+. ..+.+|+++.-.. ..+ .+..-.
T Consensus 77 i~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~~~-~~~~~~ 143 (258)
T PRK06398 77 VNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIASVQS-----------FAV-TRNAAA 143 (258)
T ss_pred EECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCcchh-----------ccC-CCCCch
Confidence 999986431 1 12222 23445544 445555555543 3456665554221 111 233334
Q ss_pred EeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314 171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (358)
Q Consensus 171 iG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 201 (358)
++.+......+-+.++..++ +. |++..+
T Consensus 144 Y~~sKaal~~~~~~la~e~~--~~-i~vn~i 171 (258)
T PRK06398 144 YVTSKHAVLGLTRSIAVDYA--PT-IRCVAV 171 (258)
T ss_pred hhhhHHHHHHHHHHHHHHhC--CC-CEEEEE
Confidence 44433223345566666664 33 665555
No 322
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.88 E-value=0.039 Score=54.63 Aligned_cols=72 Identities=22% Similarity=0.237 Sum_probs=45.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhC-CC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLN-PL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~-~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
|+||+|+||+|.||..+...+... .+ ..+++++......+...++... ...... ..| .+.++++|+|+++++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~v~~-~~~-~~~~~~~Divf~a~~ 74 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGTLQD-AFD-IDALKKLDIIITCQG 74 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cceEEe-cCC-hhHhcCCCEEEECCC
Confidence 479999999999999999755554 44 4678887764322222233321 112221 122 245789999999875
No 323
>PRK06198 short chain dehydrogenase; Provisional
Probab=95.87 E-value=0.2 Score=46.16 Aligned_cols=117 Identities=12% Similarity=0.199 Sum_probs=64.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcE-EEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---ccc------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA------ 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~e-i~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a------ 93 (358)
+.++|.|+||+|++|..++..|+..+. + |+++|.+.. .....++.... .++..+. +-+|. .+.
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEALG--AKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998875 5 999998652 22222332211 2232221 11221 111
Q ss_pred -cCCCCEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 94 -LEDSDVVIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 94 -l~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
+.+.|+||.++|..... +.+.. ..+..|+. +++...+.+.+....+.+++++.-
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~ 145 (260)
T PRK06198 81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSM 145 (260)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 23689999999865322 22222 22445543 334445555544334556655543
No 324
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.87 E-value=0.053 Score=48.96 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=30.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
..||.|+|+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 459999998 8899999999999996 5899999763
No 325
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=95.87 E-value=0.47 Score=43.94 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~ 63 (358)
+.++|.|+||++++|..++..|+..+. .|++.+.+
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~ 41 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYNS 41 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCC
Confidence 345899999999999999999999887 78877543
No 326
>PRK12742 oxidoreductase; Provisional
Probab=95.87 E-value=0.1 Score=47.30 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=29.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~ 63 (358)
.++|.|+||+|.+|..++..|+..+. ++++.+.+
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~ 39 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAG 39 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence 45899999999999999999998886 78777654
No 327
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.86 E-value=0.062 Score=50.79 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=43.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
++||+|||+ |.+|..++..+...+ ...-+.++|.+... +.++.+.. ....+ +|+++.+.++|+|++++
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~--a~~~a~~~---~~~~~---~~~~ell~~~DvVvi~a 69 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEK--AENLASKT---GAKAC---LSIDELVEDVDLVVECA 69 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHH--HHHHHHhc---CCeeE---CCHHHHhcCCCEEEEcC
Confidence 479999997 999999998887754 22235678876522 22222211 12222 34556668999999997
No 328
>PRK12827 short chain dehydrogenase; Provisional
Probab=95.85 E-value=0.15 Score=46.32 Aligned_cols=117 Identities=20% Similarity=0.310 Sum_probs=65.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--c----HHHHHHhhcCCCCccEEEEe-cCCc---ccccc---
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T----PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL--- 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~----~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al--- 94 (358)
+++|.|+||+|++|..++..|+..+. ++++++... . .....++.... .++.... +-.| +.+.+
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~ 81 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAAG--GKALGLAFDVRDFAATRAALDAG 81 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999999887 888887642 1 11112222211 1222221 1111 11222
Q ss_pred ----CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHH-h---hCCCeEEEEeeCCC
Q 018314 95 ----EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIA-K---YCPNAIVNMISNPV 148 (358)
Q Consensus 95 ----~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~-~---~~p~a~iiv~tNP~ 148 (358)
...|+||..+|..... ..+. ...+..|..-...+.+.+. . ......+++++...
T Consensus 82 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~ 149 (249)
T PRK12827 82 VEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVA 149 (249)
T ss_pred HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCch
Confidence 4689999999864311 1222 2345667776666666665 1 12224455555443
No 329
>PRK06841 short chain dehydrogenase; Provisional
Probab=95.84 E-value=0.08 Score=48.64 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=31.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+.++|.|+||+|.+|..++..|+..+. +|++.+.+.
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~ 49 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSE 49 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 456899999999999999999999886 899999865
No 330
>PRK06701 short chain dehydrogenase; Provisional
Probab=95.83 E-value=0.078 Score=50.39 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=68.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCc---ccccc----
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL---- 94 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al---- 94 (358)
.+.++|.|+||+|.+|+.++..|+..+. +|++++.++. ......+.... .++..+. +-.| +.+.+
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~ 119 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETV 119 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence 3456899999999999999999998886 8999988652 22222232211 1222221 1111 11222
Q ss_pred ---CCCCEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCC
Q 018314 95 ---EDSDVVIIPAGVPR--KP--GMTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNP 147 (358)
Q Consensus 95 ---~~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP 147 (358)
...|+||..||... .+ ..+. ...+..|+.-...+.+.+.++ .+.+.+|+++.-
T Consensus 120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~ 183 (290)
T PRK06701 120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSI 183 (290)
T ss_pred HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecc
Confidence 35799999998632 11 1222 344667766666666666553 344566666554
No 331
>PRK07677 short chain dehydrogenase; Provisional
Probab=95.80 E-value=0.3 Score=44.89 Aligned_cols=114 Identities=10% Similarity=0.117 Sum_probs=65.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccc-------ccC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------ALE 95 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al~ 95 (358)
+++.|+||+|.+|..++..|+..+. .|++.|.+. ......++.... .++..+. +-+| ..+ .+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999998887 899999865 222223333221 1233221 1112 111 124
Q ss_pred CCCEEEEcCCCCCC-C--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314 96 DSDVVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 96 ~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
..|+||..+|.... + ..+. ...+..|.. +.+.+.+.+.+....+.++++|.
T Consensus 78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS 138 (252)
T PRK07677 78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVA 138 (252)
T ss_pred CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcC
Confidence 67999999875321 1 2232 223444543 44555555444444566776653
No 332
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=95.78 E-value=0.52 Score=43.56 Aligned_cols=116 Identities=15% Similarity=0.182 Sum_probs=65.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCccc---cc------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQLG---QA------ 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a------ 93 (358)
+.+++.|+||+|.+|..++..|+..+. .+++...++. .....++.+.. .++..+. +-+|.. +.
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVK 81 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHH
Confidence 345899999999999999999999886 6777766431 22223333221 1222211 112211 11
Q ss_pred -cCCCCEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 94 -LEDSDVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 94 -l~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
+...|++|..+|..... ..+.. ..+..|+ .+.+.+.+.+.+....+.+++++.
T Consensus 82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS 145 (261)
T PRK08936 82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS 145 (261)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 23579999999864321 12222 2345553 334556666666555566666654
No 333
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.78 E-value=0.098 Score=47.67 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=64.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---cccc------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQAL------ 94 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------ 94 (358)
+++++.|+||+|.+|..++..|+.++. +|+++|.++. .....++.... .++.... +-+|. ..++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 355899999999999999999999887 8999998652 22222222211 1222221 11221 1222
Q ss_pred -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 95 -~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
...|+||.++|..... ..+ -...+..|+. +.+.+.+.+.+.. .+.+++++..
T Consensus 81 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~ 143 (241)
T PRK07454 81 FGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARG-GGLIINVSSI 143 (241)
T ss_pred cCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CcEEEEEccH
Confidence 3589999999864321 122 1233445544 4445555555433 3455655543
No 334
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.77 E-value=0.025 Score=51.71 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=58.9
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe--cCCccccccCCCCEEEEcCCCCC
Q 018314 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVIIPAGVPR 108 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVIi~ag~~~ 108 (358)
|+|+||+|.+|+.++..|...++ +|..+=++........|.+... .+-... +.+++.++++|+|.|+++-+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~--~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGA--EVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTT--EEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccc--eEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 78999999999999999988665 6777766653334444554331 221111 12456678999999999765432
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Q 018314 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCP 137 (358)
Q Consensus 109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p 137 (358)
. ...+..+.+++...+.+-
T Consensus 77 ---~-------~~~~~~~~li~Aa~~agV 95 (233)
T PF05368_consen 77 ---P-------SELEQQKNLIDAAKAAGV 95 (233)
T ss_dssp ---C-------CHHHHHHHHHHHHHHHT-
T ss_pred ---h-------hhhhhhhhHHHhhhcccc
Confidence 1 224445566666666663
No 335
>PRK09134 short chain dehydrogenase; Provisional
Probab=95.77 E-value=0.12 Score=47.78 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.++++.|+||+|++|..++..|+..+. ++++.+...
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~ 43 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRS 43 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCC
Confidence 456899999999999999999998886 777776543
No 336
>PRK09186 flagellin modification protein A; Provisional
Probab=95.77 E-value=0.21 Score=45.84 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.++|.|+||+|.+|..++..|+..+. +|++.+.+.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~ 38 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK 38 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence 45899999999999999999999887 899998765
No 337
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.76 E-value=0.049 Score=58.70 Aligned_cols=67 Identities=22% Similarity=0.388 Sum_probs=46.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
.||+|||+ |.+|..++..+...++..+|+.+|.++.. ..+.++ .. .... .+++.++++++|+||++.
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~---g~--~~~~---~~~~~~~~~~aDvVilav 71 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL---GV--IDRG---EEDLAEAVSGADVIVLAV 71 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC---CC--CCcc---cCCHHHHhcCCCEEEECC
Confidence 58999997 99999999999988754479999987622 222221 11 1111 234556789999999986
No 338
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.76 E-value=0.11 Score=50.58 Aligned_cols=115 Identities=19% Similarity=0.121 Sum_probs=65.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA------- 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------- 93 (358)
+.++|.|+||+|.+|..++..|+..+. +|++.+.++ .+....++.... .++.... +-+| .++.
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 446899999999999999999999987 899999875 222333343222 1222211 1122 1111
Q ss_pred cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314 94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 94 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
+...|++|..||..... ..+. .+.+..|.- ..+.+.+.+.+.. .+.+|+++.
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~isS 143 (330)
T PRK06139 82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMIS 143 (330)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 24679999999864321 1121 223444433 3455555555543 455665543
No 339
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=95.75 E-value=0.059 Score=52.27 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=43.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
.+||+|||+ |++|.+++..|...+. +++.++....... ..+.... +.. .+..+++++||+|+++.
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~----~s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV----GTVEEAIPQADLIMNLL 67 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE----CCHHHHHhcCCEEEEeC
Confidence 468999998 9999999999998886 6666554432111 1111111 222 12356789999999986
No 340
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.75 E-value=0.063 Score=50.41 Aligned_cols=109 Identities=12% Similarity=0.110 Sum_probs=63.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---ccccc--------CC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL--------ED 96 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al--------~~ 96 (358)
++|.|+||+|++|..++..|+..+. +|++.+.+.... .++.... +.... +-+| ..+++ ..
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~--~~l~~~~----~~~~~~Dl~d~~~~~~~~~~~~~~~~g~ 76 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDV--AALEAEG----LEAFQLDYAEPESIAALVAQVLELSGGR 76 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCC----ceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999998886 899999865211 1222211 11110 1111 11122 24
Q ss_pred CCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeC
Q 018314 97 SDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 97 aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tN 146 (358)
.|+||..||..... +.+. ...+..|..- .+.+.+.+++... +.||++|.
T Consensus 77 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~-g~iv~isS 135 (277)
T PRK05993 77 LDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQ-GRIVQCSS 135 (277)
T ss_pred ccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCC-CEEEEECC
Confidence 69999999864321 1222 2345566544 5667777766543 45565554
No 341
>PRK07074 short chain dehydrogenase; Provisional
Probab=95.74 E-value=0.1 Score=48.03 Aligned_cols=34 Identities=44% Similarity=0.497 Sum_probs=30.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+++.|+||+|.+|..++..|+..+. +|+++|.+.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~ 36 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA 36 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999998876 899999765
No 342
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.74 E-value=0.035 Score=53.14 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=60.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~ 106 (358)
...+|+|+|+ |.+|..++..|...+. +|.++|++.... ........ ..+. ..++.+.++++|+||.+...
T Consensus 150 ~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~--~~~~~~g~-~~~~----~~~l~~~l~~aDiVint~P~ 219 (287)
T TIGR02853 150 HGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADL--ARITEMGL-IPFP----LNKLEEKVAEIDIVINTIPA 219 (287)
T ss_pred CCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCCC-eeec----HHHHHHHhccCCEEEECCCh
Confidence 4569999998 9999999999988775 899999865211 11111111 0111 13456778999999998521
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-eCCCCc
Q 018314 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNS 150 (358)
Q Consensus 107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~-tNP~d~ 150 (358)
+ ++ + . ..++...|++++|.+ ++|-.+
T Consensus 220 ~---------ii--~----~---~~l~~~k~~aliIDlas~Pg~t 246 (287)
T TIGR02853 220 L---------VL--T----A---DVLSKLPKHAVIIDLASKPGGT 246 (287)
T ss_pred H---------Hh--C----H---HHHhcCCCCeEEEEeCcCCCCC
Confidence 1 01 1 1 223444567877765 778654
No 343
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.18 Score=46.30 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=31.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.++|.|+||+|.+|..++..|+..+. +|++.|.++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~ 39 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTA 39 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 45899999999999999999999887 899999865
No 344
>PRK06196 oxidoreductase; Provisional
Probab=95.73 E-value=0.069 Score=51.26 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=64.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCC-CccEEEEecCCccc-------cccCCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT-RSEVAGYMGNDQLG-------QALEDS 97 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~-~~~v~~~~~~~d~~-------~al~~a 97 (358)
.++|.|+||+|++|..++..|+..+. +|++.+++.. .....++..... ..++. +..+.. +.+.+.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~---d~~~v~~~~~~~~~~~~~i 100 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEVVMLDLA---DLESVRAFAERFLDSGRRI 100 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeEEEccCC---CHHHHHHHHHHHHhcCCCC
Confidence 45899999999999999999999887 8999998752 212222221110 00111 001111 113568
Q ss_pred CEEEEcCCCCCCCC----CCHHHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 98 DVVIIPAGVPRKPG----MTRDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 98 DiVIi~ag~~~~~g----~~r~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
|++|..||....+. ..-...+..| ..+.+.+.+.+++.. .+.+|++|.
T Consensus 101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS 156 (315)
T PRK06196 101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSS 156 (315)
T ss_pred CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence 99999998642211 1122334444 344666666666543 356666654
No 345
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.062 Score=50.15 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=64.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCc----------cccccC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQ----------LGQALE 95 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d----------~~~al~ 95 (358)
.++|.|+||+|++|..++..|+..+. .|++.+.++. .....++... ..... +-+| ..+.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~-D~~~~~~~~~~~~~~~~~~~ 77 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLV----VGGPL-DVTDPASFAAFLDAVEADLG 77 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccc----eEEEc-cCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999998886 7999997652 2222222211 11000 1111 112235
Q ss_pred CCCEEEEcCCCCCCC---CCC---HHHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
+.|++|..+|..... ..+ -...+..|.. +.+.+.+.+.+.. .+.|++++.-
T Consensus 78 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~ 138 (273)
T PRK07825 78 PIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVASL 138 (273)
T ss_pred CCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCc
Confidence 789999999864321 112 1234455554 4455556555443 4556666543
No 346
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=95.73 E-value=0.11 Score=47.70 Aligned_cols=112 Identities=20% Similarity=0.288 Sum_probs=64.4
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------cCC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LED 96 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~~ 96 (358)
++.|+||+|.+|..++..|+..+. +|++++.++. .....++.+.. .++..+. +-+| +.++ +..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999998886 8999987652 22223333222 1222221 1112 1111 235
Q ss_pred CCEEEEcCCCCC-CC--CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEee
Q 018314 97 SDVVIIPAGVPR-KP--GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 97 aDiVIi~ag~~~-~~--g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
.|+||.++|... .+ +.+.. ..+..|. .+++.+.+.+++...++.+++++
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 699999998632 11 22332 2344554 34455666666655556666554
No 347
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.72 E-value=0.053 Score=49.40 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
||+.|+||+|.+|+.++..|+..+. +|++.|.++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~ 34 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR 34 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5899999999999999999998886 899999865
No 348
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.72 E-value=0.07 Score=49.25 Aligned_cols=99 Identities=22% Similarity=0.346 Sum_probs=61.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCC----cHH-----HHHHhhcCCCCccEEEEecCCccccccCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIAN----TPG-----VAADVGHINTRSEVAGYMGNDQLGQALED 96 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~----~~~-----~~~dl~~~~~~~~v~~~~~~~d~~~al~~ 96 (358)
+..||.|+|| |.+|..++..|...+. -++|+++|++. ... ...++.+....... ..++.+++++
T Consensus 24 ~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~-----~~~l~~~l~~ 97 (226)
T cd05311 24 EEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKT-----GGTLKEALKG 97 (226)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcc-----cCCHHHHHhc
Confidence 4569999998 9999999999988774 12899999983 111 11222211100011 1245678899
Q ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314 97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (358)
Q Consensus 97 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d 149 (358)
+|+||-+.+ +|+- + .+..+. .+++.+++..+||..
T Consensus 98 ~dvlIgaT~----~G~~-------~----~~~l~~---m~~~~ivf~lsnP~~ 132 (226)
T cd05311 98 ADVFIGVSR----PGVV-------K----KEMIKK---MAKDPIVFALANPVP 132 (226)
T ss_pred CCEEEeCCC----CCCC-------C----HHHHHh---hCCCCEEEEeCCCCC
Confidence 999998764 3431 1 122222 246777777889974
No 349
>PRK06046 alanine dehydrogenase; Validated
Probab=95.72 E-value=0.023 Score=55.36 Aligned_cols=92 Identities=16% Similarity=0.270 Sum_probs=60.3
Q ss_pred hhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEE
Q 018314 6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG 83 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~ 83 (358)
|-.++|-|-.+-+-++++.+ ...+|+|||+ |.+|...+..+...+.+.++.++|++. ....+.++.+. .+..+..
T Consensus 108 lT~~RTaA~sala~~~La~~-~~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~~v~~ 184 (326)
T PRK06046 108 LTDMRTGAAGGVAAKYLARK-DSKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV-VGCDVTV 184 (326)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CCCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh-cCceEEE
Confidence 44455555555555555544 4569999997 999998888777666678999999986 23334444332 1223443
Q ss_pred EecCCccccccCCCCEEEEcC
Q 018314 84 YMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 84 ~~~~~d~~~al~~aDiVIi~a 104 (358)
+ +|+++++. +|+|+++-
T Consensus 185 ~---~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 185 A---EDIEEACD-CDILVTTT 201 (326)
T ss_pred e---CCHHHHhh-CCEEEEec
Confidence 3 45667776 99999864
No 350
>PRK12744 short chain dehydrogenase; Provisional
Probab=95.71 E-value=0.35 Score=44.57 Aligned_cols=156 Identities=12% Similarity=0.149 Sum_probs=78.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--c----HHHHHHhhcCCCCccEEEEe-cCCc---cccc---
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T----PGVAADVGHINTRSEVAGYM-GNDQ---LGQA--- 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~----~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a--- 93 (358)
+.+++.|+||+|++|..++..|+..+. ++++++.+. . .....++.... .++..+. +-+| ..+.
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~ 82 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDD 82 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHH
Confidence 346899999999999999999998876 666665432 1 11222232211 1222221 1111 1111
Q ss_pred ----cCCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-eCCCCcchHHHHHHHHH
Q 018314 94 ----LEDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPIAAEVFKK 161 (358)
Q Consensus 94 ----l~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~-tNP~d~~t~~~~~~~~~ 161 (358)
+...|++|++||.... + ..+. ...+..|..-...+.+.+.+.. +.+.++++ +......
T Consensus 83 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~---------- 152 (257)
T PRK12744 83 AKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF---------- 152 (257)
T ss_pred HHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc----------
Confidence 2467999999986321 1 1222 2344556544433444443322 23444433 3222111
Q ss_pred hCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314 162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (358)
Q Consensus 162 sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 201 (358)
.|....++.+......+-+.+++.++ +..|++..+
T Consensus 153 ---~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v~~v 187 (257)
T PRK12744 153 ---TPFYSAYAGSKAPVEHFTRAASKEFG--ARGISVTAV 187 (257)
T ss_pred ---CCCcccchhhHHHHHHHHHHHHHHhC--cCceEEEEE
Confidence 12223445543334566677777765 445655444
No 351
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=95.70 E-value=0.13 Score=48.72 Aligned_cols=98 Identities=19% Similarity=0.280 Sum_probs=62.7
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC-CCCEEEEcCCCCCC
Q 018314 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPAGVPRK 109 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~-~aDiVIi~ag~~~~ 109 (358)
|.|+|++|.||+++...|...++ +|..+-++....... + + ..+... +.+.+... ++|+||..||.|.-
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~~-~-~----~~v~~~---~~~~~~~~~~~DavINLAG~~I~ 69 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQN-L-H----PNVTLW---EGLADALTLGIDAVINLAGEPIA 69 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhhh-c-C----cccccc---chhhhcccCCCCEEEECCCCccc
Confidence 67999999999999999999988 888888765222111 1 1 112211 11122233 79999999998753
Q ss_pred CC---CC-HHHHHHHHHHHHHHHHHHHHhhCCCe
Q 018314 110 PG---MT-RDDLFNINAGIVKDLCSAIAKYCPNA 139 (358)
Q Consensus 110 ~g---~~-r~~~~~~N~~i~~~i~~~i~~~~p~a 139 (358)
.. .. -..+..--+...+.+++.|.+.....
T Consensus 70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P 103 (297)
T COG1090 70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP 103 (297)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence 32 11 23344555677788888888766333
No 352
>PRK09072 short chain dehydrogenase; Provisional
Probab=95.70 E-value=0.24 Score=45.86 Aligned_cols=116 Identities=24% Similarity=0.277 Sum_probs=64.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCccc---c------cc
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---Q------AL 94 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~------al 94 (358)
+.++|.|+||+|.+|..++..|+..+. +|++.+.++. .....++.+ +.++..+. +-.|.. + .+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHhc
Confidence 456899999999999999999998886 8999998752 222222311 11233321 112211 0 13
Q ss_pred CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCC
Q 018314 95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP 147 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP 147 (358)
...|+||.++|..... ..+. .+.+..|..-...+.+.+.++ .+.+.+++++..
T Consensus 79 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~ 140 (263)
T PRK09072 79 GGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGST 140 (263)
T ss_pred CCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 4679999999864321 1121 234456655444444444332 223556656553
No 353
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=95.69 E-value=0.11 Score=55.37 Aligned_cols=90 Identities=18% Similarity=0.171 Sum_probs=60.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcccccc--CCCCEEEEc
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVIIP 103 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al--~~aDiVIi~ 103 (358)
.+.|||.|+||+|++|++++..|...+. ++.. ... |+.+.. . +...+ .+.|+||++
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~-~~~-------~l~d~~---~---------v~~~i~~~~pd~Vih~ 435 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEY-GKG-------RLEDRS---S---------LLADIRNVKPTHVFNA 435 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC--eEEe-ecc-------ccccHH---H---------HHHHHHhhCCCEEEEC
Confidence 4568999999999999999999888775 5421 110 111100 0 01112 268999999
Q ss_pred CCCCCCC--C---CCHHHHHHHHHHHHHHHHHHHHhhCC
Q 018314 104 AGVPRKP--G---MTRDDLFNINAGIVKDLCSAIAKYCP 137 (358)
Q Consensus 104 ag~~~~~--g---~~r~~~~~~N~~i~~~i~~~i~~~~p 137 (358)
|+....+ + ....+.+..|+.....+++..++.+.
T Consensus 436 Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~ 474 (668)
T PLN02260 436 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL 474 (668)
T ss_pred CcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC
Confidence 9764322 2 23466788999999999999998864
No 354
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=95.69 E-value=0.18 Score=46.50 Aligned_cols=117 Identities=17% Similarity=0.230 Sum_probs=64.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccc-------c
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------A 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------a 93 (358)
+.++|.|+||+|.+|..++..|+..+. ++++.|.+.. .....++.+.. .++.... +-+| ..+ .
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999998886 8999987652 22223333221 1222111 1111 111 2
Q ss_pred cCCCCEEEEcCCCCC--CCCCCHHH---HHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCC
Q 018314 94 LEDSDVVIIPAGVPR--KPGMTRDD---LFNINAGIVKDLCSAIAKY---CPNAIVNMISNP 147 (358)
Q Consensus 94 l~~aDiVIi~ag~~~--~~g~~r~~---~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP 147 (358)
+...|++|..+|... ....+..+ .+..|+.-...+.+.+..+ ...+.+++++.-
T Consensus 86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~ 147 (255)
T PRK06113 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSM 147 (255)
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 345799999998532 12233332 2455655444444443321 223455655543
No 355
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.69 E-value=0.082 Score=47.86 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=28.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+++|.|+||+|.+|+.++..|.+++. ++.+.....
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~ 40 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSD 40 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 45899999999999999999999887 666655443
No 356
>PRK06128 oxidoreductase; Provisional
Probab=95.68 E-value=0.21 Score=47.47 Aligned_cols=115 Identities=22% Similarity=0.238 Sum_probs=65.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc----HHHHHHhhcCCCCccEEEEe-cCCc---cc-------c
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYM-GNDQ---LG-------Q 92 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~ 92 (358)
.++|.|+||+|++|..++..|+..+. +|++.+.+.. ......+.... .++..+. +-.| .. +
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999886 7888765431 12222232221 1222211 1111 11 1
Q ss_pred ccCCCCEEEEcCCCCC--CC--CCC---HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314 93 ALEDSDVVIIPAGVPR--KP--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN 146 (358)
Q Consensus 93 al~~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN 146 (358)
.+...|++|..||... .+ ..+ -...+..|+.-...+.+.+.++- +.+.+|+++.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 2346899999998642 21 222 23456677665555555555443 3456665554
No 357
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.67 E-value=0.062 Score=55.27 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=58.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcC----CCCccEEEEecCCccccccC---CCCE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----NTRSEVAGYMGNDQLGQALE---DSDV 99 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~----~~~~~v~~~~~~~d~~~al~---~aDi 99 (358)
..++|++||- |.||+.++..|+..++ +|+.||+...+. .++.+. .. ..+.. ..++.+..+ .+|+
T Consensus 5 ~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k~--~~l~~~~~~~Ga-~~~~~---a~s~~e~v~~l~~~dv 75 (493)
T PLN02350 5 ALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKV--DETVERAKKEGN-LPLYG---FKDPEDFVLSIQKPRS 75 (493)
T ss_pred CCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHHH--HHHHHhhhhcCC-ccccc---CCCHHHHHhcCCCCCE
Confidence 4568999997 9999999999999998 999999865222 222221 11 11222 133444444 5999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCC
Q 018314 100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV 148 (358)
Q Consensus 100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~ 148 (358)
||+... . -+.++++...+-.. .|+.++|-.||-.
T Consensus 76 Ii~~v~----~-----------~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 76 VIILVK----A-----------GAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred EEEECC----C-----------cHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 999741 1 12233332333333 4666777666653
No 358
>PRK08263 short chain dehydrogenase; Provisional
Probab=95.66 E-value=0.04 Score=51.62 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=62.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---ccc-------ccCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------ALEDS 97 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al~~a 97 (358)
+.|.|+||+|++|+.++..|+..+. +|++.+.+.... .++.+.. ...+..+. +-+| +.+ .+...
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTATL--ADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRL 78 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999998886 899999765211 1111111 01111111 1111 111 13467
Q ss_pred CEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEee
Q 018314 98 DVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 98 DiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~t 145 (358)
|.||+++|..... ..+ -.+.+..|+.- .+.+.+.+++...+ .+|+++
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs 135 (275)
T PRK08263 79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS 135 (275)
T ss_pred CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence 9999999865321 112 22344555554 56666666665444 455454
No 359
>PLN02928 oxidoreductase family protein
Probab=95.66 E-value=0.04 Score=54.21 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=62.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHh--hcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV--GHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl--~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ 103 (358)
-..++|+|||. |.||+.++..+..-|. +|..||..........+ ................++++.++.||+|++.
T Consensus 157 l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 157 LFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence 45679999997 9999999999886565 99999975321111111 0000000000000124678899999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
.- ..+ .|-.++. .+.++...|++++|+++--
T Consensus 234 lP--lt~---------~T~~li~--~~~l~~Mk~ga~lINvaRG 264 (347)
T PLN02928 234 CT--LTK---------ETAGIVN--DEFLSSMKKGALLVNIARG 264 (347)
T ss_pred CC--CCh---------HhhcccC--HHHHhcCCCCeEEEECCCc
Confidence 52 111 2222221 3455556788999988644
No 360
>PRK12746 short chain dehydrogenase; Provisional
Probab=95.65 E-value=0.18 Score=46.31 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=61.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEe-cCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---cccc------
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQAL------ 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D-~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------ 94 (358)
.++|.|+||+|.+|+.++..|+..+. ++++.+ .+.. .....++.... .++..+. +-.|. .+++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 46899999999999999999998886 676654 3321 12222232111 1222221 11221 1112
Q ss_pred -------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314 95 -------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN 146 (358)
Q Consensus 95 -------~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN 146 (358)
.+.|+||+++|..... ..+. ...+..|+.-...+.+.+.++. ..+.++++|.
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS 147 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 2689999999864321 1121 2334566665555555555432 2235555543
No 361
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=95.65 E-value=0.15 Score=46.63 Aligned_cols=115 Identities=17% Similarity=0.308 Sum_probs=62.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------ 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------ 94 (358)
.+.+.|+||+|.+|+.++..|+..+. ++++.+.+. ......++.+.. .++.... +-.| +.+++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999998886 676655432 122223443321 1233221 1111 11222
Q ss_pred -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeC
Q 018314 95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN 146 (358)
Q Consensus 95 -~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tN 146 (358)
...|+||+++|..... ..+ -.+.+..|..-...+.+.+..+ ..++.+++++.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 143 (247)
T PRK12935 82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS 143 (247)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 3479999999864321 111 2334556655554444444432 23445565554
No 362
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.65 E-value=0.063 Score=54.43 Aligned_cols=128 Identities=21% Similarity=0.222 Sum_probs=82.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~ 107 (358)
++||+|+|- |.-|.+++..|...+. ++..+|.++......+... ....+....+..+. +...++|+||..-|+|
T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~~G~--~v~v~D~~~~~~~~~~~~~--~~~~i~~~~g~~~~-~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 7 GKKVLVLGL-GKSGLAAARFLLKLGA--EVTVSDDRPAPEGLAAQPL--LLEGIEVELGSHDD-EDLAEFDLVVKSPGIP 80 (448)
T ss_pred CCEEEEEec-ccccHHHHHHHHHCCC--eEEEEcCCCCccchhhhhh--hccCceeecCccch-hccccCCEEEECCCCC
Confidence 679999997 9999999999999886 9999998763211111110 01234433343333 6789999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--eCCCCcchHHHHHHHHHhC
Q 018314 108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG 163 (358)
Q Consensus 108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~--tNP~d~~t~~~~~~~~~sg 163 (358)
...-. -.......++++-++--..+... .+.+|-+ ||==...|.+++++++.+|
T Consensus 81 ~~~p~-v~~A~~~gi~i~~dieL~~r~~~-~~p~vaITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 81 PTHPL-VEAAKAAGIEIIGDIELFYRLSG-EAPIVAITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred CCCHH-HHHHHHcCCcEEeHHHHHHHhcC-CCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 53321 12233456677766666655431 1113334 5555578888888888888
No 363
>PRK08219 short chain dehydrogenase; Provisional
Probab=95.64 E-value=0.07 Score=47.90 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=45.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-c---CCccccccC---CCCEE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALE---DSDVV 100 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~---~aDiV 100 (358)
+++|.|+||+|.+|..++..|+.. . +|+++|.+... ..++.+... .+.... + ..++.++++ +.|+|
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~id~v 75 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELP--GATPFPVDLTDPEAIAAAVEQLGRLDVL 75 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhc--cceEEecCCCCHHHHHHHHHhcCCCCEE
Confidence 458999999999999999988877 4 79999976422 112221110 111111 1 122233343 68999
Q ss_pred EEcCCCC
Q 018314 101 IIPAGVP 107 (358)
Q Consensus 101 Ii~ag~~ 107 (358)
|+++|..
T Consensus 76 i~~ag~~ 82 (227)
T PRK08219 76 VHNAGVA 82 (227)
T ss_pred EECCCcC
Confidence 9999864
No 364
>PRK05599 hypothetical protein; Provisional
Probab=95.64 E-value=0.57 Score=43.11 Aligned_cols=155 Identities=12% Similarity=0.144 Sum_probs=81.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc----------cccccC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQALE 95 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al~ 95 (358)
|.+.|+||++++|..++..|++ +. .|++.+.++ .+..+.++..... ..+..+. +-.| ..+.+.
T Consensus 1 ~~vlItGas~GIG~aia~~l~~-g~--~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH-GE--DVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC-CC--EEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 3588999999999999999884 53 899999765 3333444543221 1122211 1111 112235
Q ss_pred CCCEEEEcCCCCCCC---CCCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCC
Q 018314 96 DSDVVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY 165 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~ 165 (358)
.-|++|..+|..... ..+. .+....| ..+.+.+.+.+.+...++.|++++.-..... .
T Consensus 77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~------------~ 144 (246)
T PRK05599 77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRA------------R 144 (246)
T ss_pred CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccC------------C
Confidence 689999999864321 1111 1222223 3344555666665544577777766543221 1
Q ss_pred CCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314 166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (358)
Q Consensus 166 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 201 (358)
+..-.++.+.-....+-+.+++.++ +..|++..+
T Consensus 145 ~~~~~Y~asKaa~~~~~~~la~el~--~~~I~v~~v 178 (246)
T PRK05599 145 RANYVYGSTKAGLDAFCQGLADSLH--GSHVRLIIA 178 (246)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHhc--CCCceEEEe
Confidence 2222334432223345566676653 445655433
No 365
>PRK07904 short chain dehydrogenase; Provisional
Probab=95.64 E-value=0.16 Score=47.17 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=66.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCc---ccccc----
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL---- 94 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al---- 94 (358)
+.++|.|+||+|++|..++..++..+ . .|++.++++. .....++.... ..++.... +-+| ..+.+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence 45689999999999999999988874 5 8999998752 22233443321 11232221 1111 11111
Q ss_pred --CCCCEEEEcCCCCCCCCC---CH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314 95 --EDSDVVIIPAGVPRKPGM---TR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 95 --~~aDiVIi~ag~~~~~g~---~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
.+.|++|..+|....... +. .+.+..|.. +.+.+.+.+.+... +.+++++.
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~isS 146 (253)
T PRK07904 84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMSS 146 (253)
T ss_pred hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence 379999998887432211 11 123555543 34567777776554 45555544
No 366
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=95.63 E-value=0.16 Score=45.85 Aligned_cols=114 Identities=20% Similarity=0.279 Sum_probs=65.2
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------CC
Q 018314 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------ED 96 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~~ 96 (358)
|.|+|++|.+|..++..|+.++. ++++.+.+. ......++.+... ++.... +-+| +.+.+ ..
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYGV--KALGVVCDVSDREDVKAVVEEIEEELGP 76 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999887 899998754 1222333432221 222211 1112 22222 34
Q ss_pred CCEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHhhC---CCeEEEEeeCCC
Q 018314 97 SDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNPV 148 (358)
Q Consensus 97 aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~iiv~tNP~ 148 (358)
.|+||..+|.... + +.+ -...+..|..-...+.+.+.++. ..+.+++++...
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~ 137 (239)
T TIGR01830 77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVV 137 (239)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence 6999999986421 1 111 23456677776666666655442 234566565543
No 367
>PRK08703 short chain dehydrogenase; Provisional
Probab=95.62 E-value=0.8 Score=41.62 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=31.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.++|.|+||+|++|.+++..|+..+. +|++++.++
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~ 40 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ 40 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence 45899999999999999999998886 899999876
No 368
>PRK12747 short chain dehydrogenase; Provisional
Probab=95.62 E-value=0.57 Score=42.94 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~ 62 (358)
.+.+.|+||+|++|.+++..|+..+. +|++.+.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~ 36 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYG 36 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence 35899999999999999999999886 7888754
No 369
>PRK12743 oxidoreductase; Provisional
Probab=95.61 E-value=0.6 Score=43.02 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=62.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c--HHHHHHhhcCCCCccEEEEe-cCCcc---cc-------cc
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGVAADVGHINTRSEVAGYM-GNDQL---GQ-------AL 94 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------al 94 (358)
++|.|+||+|.+|..++..|+..+. +|++.+... . .....++.... .++.... +-+|. ++ .+
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4799999999999999999999886 787776433 1 22223333221 1222221 11221 11 12
Q ss_pred CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeCC
Q 018314 95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tNP 147 (358)
...|+||+.+|..... +.+. .+.+..|..-. +.+.+.+.+....+.+|+++.-
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~ 141 (256)
T PRK12743 79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSV 141 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeec
Confidence 3579999999864321 1121 23344454433 4444444433334667766653
No 370
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=95.61 E-value=0.088 Score=51.07 Aligned_cols=107 Identities=21% Similarity=0.415 Sum_probs=67.1
Q ss_pred cccccCCCCCCceEEEEcCCCChHHHHHHHHHhC----C-CCcEEEEEecCC-cHHHHHHhh------cCC--------C
Q 018314 18 ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLN----P-LVSRLALYDIAN-TPGVAADVG------HIN--------T 77 (358)
Q Consensus 18 ~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~----~-~~~ei~L~D~~~-~~~~~~dl~------~~~--------~ 77 (358)
++..-+.+..+.||+|||+ |+=|++++-.+..+ + ...+|..|=..+ ..+....|. |.. .
T Consensus 11 ~~~~~~~~~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~l 89 (372)
T KOG2711|consen 11 IRNLGKAERDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKL 89 (372)
T ss_pred hhccCchhcCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccC
Confidence 3334445556789999997 99999998776653 2 234666665544 223122222 211 2
Q ss_pred CccEEEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe
Q 018314 78 RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI 144 (358)
Q Consensus 78 ~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~ 144 (358)
|.++.. .+|+.++++|||++|+.. | -+.+.++++.|..+- |++..|..
T Consensus 90 P~NvvA---v~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL 138 (372)
T KOG2711|consen 90 PENVVA---VPDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISL 138 (372)
T ss_pred CCCeEe---cchHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEe
Confidence 445554 478999999999999974 3 345667778887775 56555543
No 371
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.60 E-value=0.097 Score=47.26 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
..||+|+|+ |.+|+.++..|+..|+ .+|+++|.+.
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT 55 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 459999998 8999999999999995 6899999864
No 372
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.59 E-value=0.056 Score=51.99 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=47.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
...||.|+|+ |.+|..++..|...+. +|..+|++.. ...+.++ .. +.. ..+++.+.++++|+||.+.
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G~--~~~---~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---GL--SPF---HLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---CC--eee---cHHHHHHHhCCCCEEEECC
Confidence 4679999998 9999999999988775 9999998752 2222222 11 111 1134567789999999985
No 373
>PRK08324 short chain dehydrogenase; Validated
Probab=95.59 E-value=0.14 Score=54.83 Aligned_cols=115 Identities=20% Similarity=0.300 Sum_probs=65.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------ 94 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------ 94 (358)
+.++|.|+||+|.+|..++..|+..+. +|+++|++.. .....++... .++.... +-+| ..+++
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999998886 8999998762 2222233321 1222211 1112 11222
Q ss_pred -CCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 95 -EDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 95 -~~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
.+.|+||.++|..... ..+.. ..+..| ..+++...+.+++....+.+++++.
T Consensus 496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 3689999999864321 12221 223344 3444555565555443456666654
No 374
>PRK09242 tropinone reductase; Provisional
Probab=95.59 E-value=0.29 Score=45.05 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=65.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc----------ccccc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQAL 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al 94 (358)
.+++.|+||+|.+|..++..|+..+. +|++.+.+. ......++.......++.... +-.| ..+.+
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999887 899999865 222333443321112232221 1111 11234
Q ss_pred CCCCEEEEcCCCCC-CC--CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 95 EDSDVVIIPAGVPR-KP--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 95 ~~aDiVIi~ag~~~-~~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
...|+||.++|... .+ ..+.. ..+..|.. +.+.+.+.+++.. .+.+++++.-
T Consensus 87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~sS~ 148 (257)
T PRK09242 87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHA-SSAIVNIGSV 148 (257)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CceEEEECcc
Confidence 56799999998632 11 12222 23444544 4444455554433 3455655443
No 375
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.59 E-value=0.079 Score=53.61 Aligned_cols=127 Identities=18% Similarity=0.308 Sum_probs=76.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~ 107 (358)
.++|.|+|+ |..|.+.+..|...+. ++..+|..........|..... .++.+.+..+ ...+.++|+||.+.|+|
T Consensus 5 ~~~~~v~G~-g~~G~~~a~~l~~~g~--~v~~~d~~~~~~~~~~l~~~~~--gi~~~~g~~~-~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 5 NKKILVAGL-GGTGISMIAYLRKNGA--EVAAYDAELKPERVAQIGKMFD--GLVFYTGRLK-DALDNGFDILALSPGIS 78 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCchhHHHHhhccC--CcEEEeCCCC-HHHHhCCCEEEECCCCC
Confidence 458999998 9999999999998887 8999997653211223433211 2443333222 23457899999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHH--HH-HHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314 108 RKPGMTRDDLFNINAGIVKD--LC-SAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG 163 (358)
Q Consensus 108 ~~~g~~r~~~~~~N~~i~~~--i~-~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg 163 (358)
...-. .....+.+++++.+ +. ..+++. +..+|-+|=..+ .+|.+++++++..|
T Consensus 79 ~~~p~-~~~a~~~~i~v~~~~~~~~~~~~~~--~~~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 79 ERQPD-IEAFKQNGGRVLGDIELLADIVNRR--GDKVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred CCCHH-HHHHHHcCCcEEEhHHHHHHhhhcC--CCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 43221 11222456666532 32 223222 223455555554 78888888888777
No 376
>PRK06179 short chain dehydrogenase; Provisional
Probab=95.59 E-value=0.053 Score=50.42 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=62.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccC-------CCCE
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALE-------DSDV 99 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~-------~aDi 99 (358)
.++|.|+||+|.+|..++..|+..+. +|++.+.+...... ..+.. -+..- ++.+++.++++ ..|+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~--~~~~~---~~~~D~~d~~~~~~~~~~~~~~~g~~d~ 76 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAAP--IPGVE---LLELDVTDDASVQAAVDEVIARAGRIDV 76 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhccc--cCCCe---eEEeecCCHHHHHHHHHHHHHhCCCCCE
Confidence 34799999999999999999998886 89999986421110 01100 01110 01122223333 4699
Q ss_pred EEEcCCCCCCCC---CC---HHHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 100 VIIPAGVPRKPG---MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 100 VIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
||.++|...... .+ -...+..|. ...+.+.+.+++... +.+++++..
T Consensus 77 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~~iv~isS~ 133 (270)
T PRK06179 77 LVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGS-GRIINISSV 133 (270)
T ss_pred EEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEECCc
Confidence 999998743221 12 123344454 344555555555443 455655543
No 377
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.58 E-value=0.43 Score=44.85 Aligned_cols=68 Identities=34% Similarity=0.345 Sum_probs=43.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
++||+|+|++|.||+.++..+...+-..-+.++|.+...... .. . ..+.. .+|+++.++++|+||...
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~--~~--~--~~i~~---~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG--QG--A--LGVAI---TDDLEAVLADADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc--cC--C--CCccc---cCCHHHhccCCCEEEECC
Confidence 579999997799999999877765533334458876521111 11 1 12222 356677778999999664
No 378
>PLN02996 fatty acyl-CoA reductase
Probab=95.57 E-value=0.22 Score=51.26 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=67.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHh-CCCCcEEEEEecCCc--H---HHHHHhhcCC------------C----CccEEEE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANT--P---GVAADVGHIN------------T----RSEVAGY 84 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~-~~~~~ei~L~D~~~~--~---~~~~dl~~~~------------~----~~~v~~~ 84 (358)
+.+.|.|+||+|++|+.++..|+. .+...+|++..+... . ....++.+.. . ..++...
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i 89 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV 89 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence 345899999999999999987765 445667888776541 1 1111111100 0 1244443
Q ss_pred ecC-C---------c-cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 018314 85 MGN-D---------Q-LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135 (358)
Q Consensus 85 ~~~-~---------d-~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~ 135 (358)
.+. . + +.+.++++|+||++|+... ...+..+....|+.....+.+...+.
T Consensus 90 ~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~ 150 (491)
T PLN02996 90 PGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC 150 (491)
T ss_pred ecccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 321 0 1 2345678999999987543 23345567788999999998888764
No 379
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.57 E-value=0.34 Score=44.86 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=66.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCccc----------ccc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQLG----------QAL 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~al 94 (358)
.+.+.|+||+|.+|..++..|+..+. +|++.++++ ......++.......++..+. +-.|.. +.+
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 45799999999999999999999887 899999875 222233333221111332221 112211 123
Q ss_pred CCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 95 EDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
...|++|..||..... ..+.. ..+..| ....+.+.+.+++.. .+.|++++.-
T Consensus 86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~ 147 (265)
T PRK07062 86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNSL 147 (265)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEeccc
Confidence 4579999999864311 11221 222233 445566666666543 3556655543
No 380
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.56 E-value=0.09 Score=53.33 Aligned_cols=125 Identities=19% Similarity=0.288 Sum_probs=76.7
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHH---HHHhhcCCCCccEEEEecCC-cc---ccccCCCCEEEE
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAGYMGND-QL---GQALEDSDVVII 102 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~---~~dl~~~~~~~~v~~~~~~~-d~---~~al~~aDiVIi 102 (358)
||.|+|+ |..|.+.|..|...|. +|.++|.++.... ...|.... ++.+.+.. ++ ...+.+.|.||.
T Consensus 2 ~v~viG~-G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~g~~~~~~~~~~~~~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGL-GRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQEG----ITVKLGKPLELESFQPWLDQPDLVVV 74 (459)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHcC----CEEEECCccchhhhhHHhhcCCEEEE
Confidence 7999998 9999999999999987 8999998752111 11233322 22222221 10 024778999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--eCCCCcchHHHHHHHHHhC
Q 018314 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG 163 (358)
Q Consensus 103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~--tNP~d~~t~~~~~~~~~sg 163 (358)
+.|.|...- ........+++++.++....+... +..+|-+ ||==..+|.+++++++..|
T Consensus 75 s~gi~~~~~-~~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml~~iL~~~g 135 (459)
T PRK02705 75 SPGIPWDHP-TLVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALLAHILQAAG 135 (459)
T ss_pred CCCCCCCCH-HHHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 988874221 122223456777776655444332 2234445 4444478888888888877
No 381
>PLN00016 RNA-binding protein; Provisional
Probab=95.55 E-value=0.09 Score=51.92 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=32.1
Q ss_pred CCceEEEE----cCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVL----GAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~Ii----GA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.++||.|+ ||+|++|+.++..|...++ +|+.++++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence 35689999 9999999999999999887 999999865
No 382
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.55 E-value=0.12 Score=49.20 Aligned_cols=67 Identities=27% Similarity=0.420 Sum_probs=42.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH---HHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~---~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+++|+|+|. |.||..++..|...++ .+..++.+...+ .+.++.=.. ... .....++.++||+||++.
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d---~~~----~~~~~~~~~~aD~Vivav 72 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVID---ELT----VAGLAEAAAEADLVIVAV 72 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCccc---ccc----cchhhhhcccCCEEEEec
Confidence 569999997 9999999999999998 444555544211 111111000 100 011146788999999985
No 383
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.54 E-value=0.0082 Score=59.55 Aligned_cols=73 Identities=25% Similarity=0.310 Sum_probs=45.3
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-c---CCccccccCCCCEEEEcCCC
Q 018314 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALEDSDVVIIPAGV 106 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~~aDiVIi~ag~ 106 (358)
|.|+|| |.||+.++..|+..+...+|++.|++....... ..+.. ..++.... + ..++.+.++++|+||.++|.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~-~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERL-AEKLL-GDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHH-HT--T-TTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHH-Hhhcc-ccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789998 999999999999988666999999876322211 11101 11222221 1 12356788999999999864
No 384
>PRK06949 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.14 Score=46.97 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=31.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.++|.|+||+|.+|+.++..|+..+. +|++.+.++
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~ 43 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV 43 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 46899999999999999999998886 899998865
No 385
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.52 E-value=0.11 Score=47.48 Aligned_cols=36 Identities=28% Similarity=0.537 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+..++.|+|++|.+|..++..++..+. .|+++|.++
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~ 39 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ 39 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 345899999999999999999998886 899999875
No 386
>PLN03139 formate dehydrogenase; Provisional
Probab=95.50 E-value=0.076 Score=52.97 Aligned_cols=96 Identities=22% Similarity=0.240 Sum_probs=60.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
.-..++|+|||. |.||..++..|..-+. +|+.||......... .+. .+.. ..++++.+++||+|++..
T Consensus 196 ~L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~l 263 (386)
T PLN03139 196 DLEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINT 263 (386)
T ss_pred CCCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeC
Confidence 345679999997 9999999999986555 899999764211111 111 1222 135678889999999975
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
|.. ..+..++- .+.+....|++++|+++
T Consensus 264 --Plt---------~~T~~li~--~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 264 --PLT---------EKTRGMFN--KERIAKMKKGVLIVNNA 291 (386)
T ss_pred --CCC---------HHHHHHhC--HHHHhhCCCCeEEEECC
Confidence 211 12222221 24555556888888774
No 387
>PRK08226 short chain dehydrogenase; Provisional
Probab=95.49 E-value=0.19 Score=46.38 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=31.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.+++.|+||+|.+|+.++..|+..+. +|++++.++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~ 40 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISP 40 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence 45899999999999999999998887 899999865
No 388
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.47 E-value=0.26 Score=44.61 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=64.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCc---cccc------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQA------ 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------ 93 (358)
++++|.|+||+|.+|+.++..|+..+. ++++...+.. .....++.... .++.... +-.| +.++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKA 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998886 7766665442 12222232211 1222221 1111 1111
Q ss_pred -cCCCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHhhC---CCeEEEEeeCC
Q 018314 94 -LEDSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDLCSAIAKYC---PNAIVNMISNP 147 (358)
Q Consensus 94 -l~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~i~~~i~~~i~~~~---p~a~iiv~tNP 147 (358)
+.+.|.||+++|..... ..+.. ..+..|+.-...+.+.+.++. +.+.+++++..
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~ 143 (248)
T PRK05557 80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSV 143 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 23689999999864321 11222 234566666666665555442 23455555543
No 389
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=95.46 E-value=0.58 Score=43.64 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=31.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.+++.|+||+|.+|..++..|+..+. +|+++|.+.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~ 44 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ 44 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45799999999999999999998887 899999865
No 390
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.44 E-value=0.074 Score=52.83 Aligned_cols=35 Identities=31% Similarity=0.606 Sum_probs=31.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~ 63 (358)
+..||.|+|+ |.+|+.++..|+..|. .+|.|+|.+
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD 168 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 4568999998 9999999999999985 589999987
No 391
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=95.44 E-value=0.66 Score=43.11 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~ 63 (358)
.+.|+||+|++|..++..|+..+. +|++.+.+
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~ 34 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR 34 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence 688999999999999999999886 78886543
No 392
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.43 E-value=0.31 Score=50.10 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=74.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~ 107 (358)
..||.|+|. |..|.++|..|...|. +|..+|.+.......+|..... .++...+..+ .+.+.++|+||.+.|+|
T Consensus 7 ~~~i~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~L~~~~~--~~~~~~g~~~-~~~~~~~d~vv~sp~I~ 80 (498)
T PRK02006 7 GPMVLVLGL-GESGLAMARWCARHGA--RLRVADTREAPPNLAALRAELP--DAEFVGGPFD-PALLDGVDLVALSPGLS 80 (498)
T ss_pred CCEEEEEee-cHhHHHHHHHHHHCCC--EEEEEcCCCCchhHHHHHhhcC--CcEEEeCCCc-hhHhcCCCEEEECCCCC
Confidence 458999997 9999999999998887 8999997652211223443321 2233222222 35678999999999887
Q ss_pred CCCCC--CHHHH-HHHHHHHHHH---HHHHHHhhC-C--CeEEEEeeCCC--CcchHHHHHHHHHhC
Q 018314 108 RKPGM--TRDDL-FNINAGIVKD---LCSAIAKYC-P--NAIVNMISNPV--NSTVPIAAEVFKKAG 163 (358)
Q Consensus 108 ~~~g~--~r~~~-~~~N~~i~~~---i~~~i~~~~-p--~a~iiv~tNP~--d~~t~~~~~~~~~sg 163 (358)
...-. .-... -..|++++.+ +...++..+ + ...+|-+|=.+ ..+|.+++++++..|
T Consensus 81 ~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g 147 (498)
T PRK02006 81 PLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG 147 (498)
T ss_pred CcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 53211 11111 1234444421 122222211 1 11345554444 478888888888877
No 393
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=95.42 E-value=0.61 Score=42.20 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=44.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc------cccccCCCCEEE
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ------LGQALEDSDVVI 101 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d------~~~al~~aDiVI 101 (358)
|+|.|+||+|++|..++..|+..+....+++.+.+.... +.+ .++..+. +-+| +.+.+...|+||
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~~----~~~~~~~~Dls~~~~~~~~~~~~~~id~li 72 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQH----DNVQWHALDVTDEAEIKQLSEQFTQLDWLI 72 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----ccc----CceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998875433666666543211 111 1222211 1111 123456889999
Q ss_pred EcCCCC
Q 018314 102 IPAGVP 107 (358)
Q Consensus 102 i~ag~~ 107 (358)
.++|..
T Consensus 73 ~~aG~~ 78 (235)
T PRK09009 73 NCVGML 78 (235)
T ss_pred ECCccc
Confidence 999875
No 394
>PRK08264 short chain dehydrogenase; Validated
Probab=95.42 E-value=0.13 Score=46.73 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=63.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-c---CCccccc---cCCCC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQA---LEDSD 98 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a---l~~aD 98 (358)
.+.++|.|+||+|.+|+.++..|+..+. .+|++++.+...... . . .++.... + .+++.+. +...|
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~--~-~----~~~~~~~~D~~~~~~~~~~~~~~~~id 75 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD--L-G----PRVVPLQLDVTDPASVAAAAEAASDVT 75 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh--c-C----CceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 3456899999999999999999998774 368889876522111 1 0 1222211 1 1122222 23579
Q ss_pred EEEEcCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCCC
Q 018314 99 VVIIPAGVPRKP----GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV 148 (358)
Q Consensus 99 iVIi~ag~~~~~----g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP~ 148 (358)
+||.++|.+... ..+. .+.+..|..-...+.+.+.+. ...+.+++++...
T Consensus 76 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~ 135 (238)
T PRK08264 76 ILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVL 135 (238)
T ss_pred EEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChh
Confidence 999999873211 1222 223445555444444443322 2345566665543
No 395
>PRK06484 short chain dehydrogenase; Validated
Probab=95.42 E-value=0.11 Score=53.35 Aligned_cols=118 Identities=20% Similarity=0.200 Sum_probs=65.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccc-------cccCCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLG-------QALEDS 97 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~-------~al~~a 97 (358)
+.+.+.|+||++.+|..++..|+..+. .|+++|.+.. .....++........... +...+.. +.+...
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~~g~i 80 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNVERARERADSLGPDHHALAMDV-SDEAQIREGFEQLHREFGRI 80 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCceeEEEecc-CCHHHHHHHHHHHHHHhCCC
Confidence 445788999999999999999999886 8999998652 222222221100000000 0011111 223468
Q ss_pred CEEEEcCCCC--C-CC--CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 98 DVVIIPAGVP--R-KP--GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 98 DiVIi~ag~~--~-~~--g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
|++|..+|.. . .+ ..+- ...+..|+ .+.+.+.+.+.+....+.+++++.-
T Consensus 81 D~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~ 142 (520)
T PRK06484 81 DVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASG 142 (520)
T ss_pred CEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCc
Confidence 9999999862 1 11 2222 23344553 4556666666554433366666543
No 396
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.41 E-value=0.46 Score=43.43 Aligned_cols=116 Identities=9% Similarity=0.080 Sum_probs=66.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cC---Cccc-------cc
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GN---DQLG-------QA 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~---~d~~-------~a 93 (358)
+.+.+.|+||++.+|..++..|+..+. .|++.+.++ .+....++.... .++..+. +. ++.. +.
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999987 899999876 222223332211 1222221 11 1111 12
Q ss_pred cC-CCCEEEEcCCCCCC--C--CCCHHH---HHHHH----HHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 94 LE-DSDVVIIPAGVPRK--P--GMTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 94 l~-~aDiVIi~ag~~~~--~--g~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
+. .-|++|..+|.... + ..+..+ .+..| ..+.+.+.+.+.+...++.|++++.
T Consensus 80 ~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS 144 (227)
T PRK08862 80 FNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS 144 (227)
T ss_pred hCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 23 68999999874221 1 122222 22223 3345566677766554567777764
No 397
>PRK08628 short chain dehydrogenase; Provisional
Probab=95.40 E-value=0.31 Score=44.82 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=57.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------C
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------E 95 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~ 95 (358)
.++|.|+||+|.+|..++..|+..+. ++++.+.++. .....++.... .++..+. +-+| +.+.+ .
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 45899999999999999999999886 7888887652 22223333222 1222221 1111 22223 3
Q ss_pred CCCEEEEcCCCCCCCC--CC---HHHHHHHHHHHHHHHHHHH
Q 018314 96 DSDVVIIPAGVPRKPG--MT---RDDLFNINAGIVKDLCSAI 132 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~g--~~---r~~~~~~N~~i~~~i~~~i 132 (358)
..|+||.++|...... .. -.+.+..|......+.+..
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~ 124 (258)
T PRK08628 83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYC 124 (258)
T ss_pred CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHH
Confidence 5799999998633221 11 2234556655444444443
No 398
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=95.39 E-value=0.048 Score=52.06 Aligned_cols=67 Identities=21% Similarity=0.360 Sum_probs=51.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~ 106 (358)
..+|+.||- |.+|++++..|+..++ .|+.||++. ....+|.+... ++. ..+.+-.++||+||...+.
T Consensus 35 ~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~--~k~~~f~~~Ga--~v~-----~sPaeVae~sDvvitmv~~ 101 (327)
T KOG0409|consen 35 KTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTK--DKCKEFQEAGA--RVA-----NSPAEVAEDSDVVITMVPN 101 (327)
T ss_pred cceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcH--HHHHHHHHhch--hhh-----CCHHHHHhhcCEEEEEcCC
Confidence 568999996 9999999999999998 999999864 33445555442 222 2246778999999998654
No 399
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=95.38 E-value=0.012 Score=56.16 Aligned_cols=97 Identities=25% Similarity=0.258 Sum_probs=58.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~ 108 (358)
|||.|+||+|.+|+.+...|...++ +++.++..+ .|+.+.. .+. ++.+. .+-|+||.+|+...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~~------~~~~~-~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AVA------KLLEA-FKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HHH------HHHHH-H--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HHH------HHHHH-hCCCeEeccceeec
Confidence 7999999999999999999998776 788886542 1222211 010 01111 25789999987642
Q ss_pred CC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 018314 109 KP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144 (358)
Q Consensus 109 ~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~ 144 (358)
.. ..........|......+++...+.+ +.+|-+
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~--~~li~~ 99 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKERG--ARLIHI 99 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEE
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHcC--CcEEEe
Confidence 11 12355667889999999999988764 454444
No 400
>PRK06500 short chain dehydrogenase; Provisional
Probab=95.37 E-value=0.38 Score=43.81 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=63.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc----------cccc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL----------GQAL 94 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al 94 (358)
.++|.|+||+|.+|..++..|+..+. +|++.+.++. .....++. .++..+. +..|. .+.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAF 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999886 8999998652 11111221 1222111 11121 1123
Q ss_pred CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeC
Q 018314 95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN 146 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tN 146 (358)
...|+||..+|..... ..+. ...+..|+.-...+.+.+.++ ...+.+++++.
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S 137 (249)
T PRK06500 79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGS 137 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4689999999864321 1222 234566666555555555543 11234444433
No 401
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=95.36 E-value=0.12 Score=50.04 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=45.5
Q ss_pred ceEEEEcCCCCh--------------------HHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe
Q 018314 29 RKVAVLGAAGGI--------------------GQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM 85 (358)
Q Consensus 29 ~KI~IiGA~G~v--------------------G~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~ 85 (358)
|||+|-|| |+- |+.+|..|+..++ +|++||++.. ......+.+.. ...
T Consensus 1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaG----A~~-- 71 (341)
T TIGR01724 1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAG----VKV-- 71 (341)
T ss_pred CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCC----Cee--
Confidence 68888887 753 6788888888888 9999998752 22233444433 122
Q ss_pred cCCccccccCCCCEEEEcC
Q 018314 86 GNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 86 ~~~d~~~al~~aDiVIi~a 104 (358)
.++..++.++||+||++-
T Consensus 72 -AaS~aEAAa~ADVVIL~L 89 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFT 89 (341)
T ss_pred -cCCHHHHHhCCCEEEEec
Confidence 134568899999999984
No 402
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.36 E-value=0.14 Score=51.66 Aligned_cols=126 Identities=18% Similarity=0.206 Sum_probs=72.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEecCCccccccC-CCCEEEEc
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIP 103 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~-~aDiVIi~ 103 (358)
+.++|.|+|+ |.+|.+.+..|+..|. +|.+.|.+. ......++.... +..+.+. +....+. +.|+||..
T Consensus 4 ~~k~v~v~G~-g~~G~s~a~~l~~~G~--~V~~~d~~~~~~~~~~~~l~~~g----~~~~~~~-~~~~~~~~~~d~vV~s 75 (447)
T PRK02472 4 QNKKVLVLGL-AKSGYAAAKLLHKLGA--NVTVNDGKPFSENPEAQELLEEG----IKVICGS-HPLELLDEDFDLMVKN 75 (447)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCCccchhHHHHHHhcC----CEEEeCC-CCHHHhcCcCCEEEEC
Confidence 3468999998 7799999999998887 899999765 122223344322 2222221 1122234 49999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC--CcchHHHHHHHHHhC
Q 018314 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV--NSTVPIAAEVFKKAG 163 (358)
Q Consensus 104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~--d~~t~~~~~~~~~sg 163 (358)
.|++...- ........+++++.+.- ......+ ..+|-+|=.. ..++.+++++++..|
T Consensus 76 ~gi~~~~~-~~~~a~~~~i~v~~~~e-l~~~~~~-~~~I~VTGT~GKTTTt~ll~~iL~~~g 134 (447)
T PRK02472 76 PGIPYTNP-MVEKALEKGIPIITEVE-LAYLISE-APIIGITGSNGKTTTTTLIGEMLKAGG 134 (447)
T ss_pred CCCCCCCH-HHHHHHHCCCcEEeHHH-HHHHhcC-CCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence 99875321 11222344566553332 1112222 2244454444 467778888887766
No 403
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.35 E-value=0.25 Score=45.49 Aligned_cols=112 Identities=15% Similarity=0.216 Sum_probs=63.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------cC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LE 95 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~ 95 (358)
+.+++.|+||+|.+|..++..|+..+. ++++.+.+.. ....++.+.. +..+. +-+| +.++ +.
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~----~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKG----VFTIKCDVGNRDQVKKSKEVVEKEFG 78 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCC----CeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 346899999999999999999999886 7877765431 1122232211 11110 1111 1122 23
Q ss_pred CCCEEEEcCCCCCC-C--CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314 96 DSDVVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 96 ~aDiVIi~ag~~~~-~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
..|+||.++|.... + ..+.. ..+..|+. +.+.+.+.+++.. .+.+|+++.
T Consensus 79 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS 138 (255)
T PRK06463 79 RVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIAS 138 (255)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence 67999999987431 1 22222 23444444 3567777776433 455665554
No 404
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.33 E-value=0.11 Score=52.95 Aligned_cols=125 Identities=21% Similarity=0.275 Sum_probs=78.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
.+||.|+|. |..|.+++..|...+. +|..+|.++. .....+|.... +..+.+.. ..+.+.++|+||.+.
T Consensus 14 ~~~i~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~~~~-~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 14 NKKVAVVGI-GVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKELG----VKLVLGEN-YLDKLDGFDVIFKTP 85 (458)
T ss_pred CCeEEEEcc-cHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhCC----CEEEeCCC-ChHHhccCCEEEECC
Confidence 348999997 9999999999999887 8999998652 11112344322 22222221 235578999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG 163 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg 163 (358)
|++...-+ .....+.+++++.++-...+ +. +..+|-+|=.++ .++.+++++++..|
T Consensus 86 gi~~~~p~-~~~a~~~~i~i~s~~e~~~~-~~-~~~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 86 SMRIDSPE-LVKAKEEGAYITSEMEEFIK-YC-PAKVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred CCCCCchH-HHHHHHcCCcEEechHHhhh-hc-CCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 88753222 22233567777765533222 32 233555655554 67778888887766
No 405
>PRK06523 short chain dehydrogenase; Provisional
Probab=95.32 E-value=0.036 Score=51.19 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=64.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc----------cccccC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ----------LGQALE 95 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al~ 95 (358)
+.++|.|+||+|.+|+.++..|+..+. +|++.+.++... +.. ++.... +-.| ..+.+.
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~~~~----~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSRPDD----LPE-----GVEFVAADLTTAEGCAAVARAVLERLG 76 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCChhhh----cCC-----ceeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 346899999999999999999998887 899999864211 111 111110 1111 112345
Q ss_pred CCCEEEEcCCCCCCC-C----CCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314 96 DSDVVIIPAGVPRKP-G----MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV 148 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~-g----~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~ 148 (358)
..|+||..||..... + .+. ...+..|. .+.+.+.+.+++... +.+|+++...
T Consensus 77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~ii~isS~~ 140 (260)
T PRK06523 77 GVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGS-GVIIHVTSIQ 140 (260)
T ss_pred CCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-cEEEEEeccc
Confidence 689999999853211 1 121 22344453 344566666665543 4566666543
No 406
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=95.31 E-value=0.063 Score=49.82 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=31.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.+++.|+||+|.+|..++..|+..+. ++++.|.++
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~ 43 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG 43 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 45899999999999999999999887 899999865
No 407
>PRK05872 short chain dehydrogenase; Provisional
Probab=95.30 E-value=0.37 Score=45.81 Aligned_cols=113 Identities=26% Similarity=0.325 Sum_probs=64.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEE-ecCCcc---c-------cc
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY-MGNDQL---G-------QA 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~-~~~~d~---~-------~a 93 (358)
+.++|.|+||+|.+|..++..|+..+. +|++.+.++. +....++... ..+... .+-+|. . +.
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGD---DRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999886 8999998652 2223333321 122211 111221 1 12
Q ss_pred cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeC
Q 018314 94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 94 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tN 146 (358)
+...|+||..+|..... ..+. ...+..|..-. +.+.+.+.+ ..+.|++++.
T Consensus 83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~--~~g~iv~isS 143 (296)
T PRK05872 83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIE--RRGYVLQVSS 143 (296)
T ss_pred cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH--cCCEEEEEeC
Confidence 35679999999864311 1221 22344554433 444444433 2456666654
No 408
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.29 E-value=0.21 Score=45.74 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
++|.|+||+|++|+.++..|+..+. +++++|.+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~ 36 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD 36 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence 4689999999999999999999886 899999754
No 409
>PRK07985 oxidoreductase; Provisional
Probab=95.29 E-value=0.5 Score=44.93 Aligned_cols=115 Identities=19% Similarity=0.155 Sum_probs=62.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc----HHHHHHhhcCCCCccEEEEe-cCCcc----------ccc
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYM-GNDQL----------GQA 93 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a 93 (358)
+++.|+||+|++|.+++..|+..+. +|++.+.+.. ......+.+.. .++..+. +-+|. .+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999887 8888876431 11111122211 1222211 11221 122
Q ss_pred cCCCCEEEEcCCCCC--CC--CCCHH---HHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCC
Q 018314 94 LEDSDVVIIPAGVPR--KP--GMTRD---DLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP 147 (358)
Q Consensus 94 l~~aDiVIi~ag~~~--~~--g~~r~---~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP 147 (358)
+...|++|..||... .+ ..+.. ..+..|+.-...+.+.+.++- .++.||++|..
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~ 187 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSI 187 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCc
Confidence 346799999998532 11 22322 335566554444444443321 24566666654
No 410
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.29 E-value=0.092 Score=52.12 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+..||.|+|+ |.+|+.++..|+..|+ .+|+|+|.+.
T Consensus 40 ~~~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDDT 75 (370)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 3568999998 9999999999999885 5999999873
No 411
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.26 E-value=0.18 Score=47.13 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=31.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCC---------CcEEEEEecCC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPL---------VSRLALYDIAN 64 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~---------~~ei~L~D~~~ 64 (358)
.++.||.|||+ |.+|+.++..|+..++ ..+|+++|.+.
T Consensus 9 ~~~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 36679999998 9999999999998642 12999999864
No 412
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.25 E-value=0.061 Score=47.57 Aligned_cols=101 Identities=24% Similarity=0.395 Sum_probs=63.0
Q ss_pred cccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCE
Q 018314 20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDV 99 (358)
Q Consensus 20 ~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDi 99 (358)
.+....-..++|+|+|. |.+|+.++..+..-+. +|+.||+...... ...+. .+.. .++++.++.||+
T Consensus 28 ~~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~~----~~l~ell~~aDi 94 (178)
T PF02826_consen 28 RFPGRELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVEY----VSLDELLAQADI 94 (178)
T ss_dssp TTTBS-STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEEE----SSHHHHHHH-SE
T ss_pred CCCccccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----ccee----eehhhhcchhhh
Confidence 34444556789999997 9999999999996666 9999998763222 11111 1222 356788999999
Q ss_pred EEEcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 100 VIIPAG-VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 100 VIi~ag-~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
|++..- .+...+. -| .+.+++..+++++|+++--
T Consensus 95 v~~~~plt~~T~~l-------i~-------~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 95 VSLHLPLTPETRGL-------IN-------AEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp EEE-SSSSTTTTTS-------BS-------HHHHHTSTTTEEEEESSSG
T ss_pred hhhhhcccccccee-------ee-------eeeeeccccceEEEeccch
Confidence 999753 2222232 11 1234445678888887654
No 413
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.25 E-value=0.045 Score=52.64 Aligned_cols=59 Identities=19% Similarity=0.390 Sum_probs=47.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+-..++|+|||.+|.||..++..|...+. ++.+++... .++.+.++.||+||.+.
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsav 210 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAV 210 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEec
Confidence 34577999999866999999999998886 888887542 13457789999999998
Q ss_pred CCCC
Q 018314 105 GVPR 108 (358)
Q Consensus 105 g~~~ 108 (358)
|.|.
T Consensus 211 g~~~ 214 (301)
T PRK14194 211 GRPR 214 (301)
T ss_pred CChh
Confidence 7653
No 414
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.24 E-value=0.085 Score=54.79 Aligned_cols=68 Identities=25% Similarity=0.371 Sum_probs=48.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314 24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (358)
Q Consensus 24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ 103 (358)
.+-..++|+|+|. |.+|+.+|..+...+. +|+.||.........++. +.. .+++.+.+++||+|++.
T Consensus 134 ~~l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~ 200 (525)
T TIGR01327 134 TELYGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQLG-------VEL---VDDLDELLARADFITVH 200 (525)
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------CEE---cCCHHHHHhhCCEEEEc
Confidence 3445679999997 9999999999886665 999999753222222221 221 13467889999999997
Q ss_pred C
Q 018314 104 A 104 (358)
Q Consensus 104 a 104 (358)
.
T Consensus 201 l 201 (525)
T TIGR01327 201 T 201 (525)
T ss_pred c
Confidence 5
No 415
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.19 E-value=0.043 Score=53.65 Aligned_cols=71 Identities=23% Similarity=0.350 Sum_probs=46.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
++||+|+||+|.+|..++..|...++ ..||..+-.+...++..++.. ..+... ... ..+++++|+||++.|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~-d~~--~~~~~~vDvVf~A~g 72 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVE-DLT--TFDFSGVDIALFSAG 72 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEe-eCC--HHHHcCCCEEEECCC
Confidence 46999999999999999999988653 347777765443333333321 123332 111 235689999999865
No 416
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.18 E-value=0.33 Score=47.48 Aligned_cols=116 Identities=19% Similarity=0.305 Sum_probs=70.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccCC-CCEEEEc
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALED-SDVVIIP 103 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~-aDiVIi~ 103 (358)
.+..+|+|+|+ |.+|......+...+ .+|+-+|+++. ...+.+|.. ..-+.. . ..|..+++++ +|+||.+
T Consensus 165 ~pG~~V~I~G~-GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGA---d~~i~~-~-~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPGKWVAVVGA-GGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGA---DHVINS-S-DSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCC---cEEEEc-C-CchhhHHhHhhCcEEEEC
Confidence 45679999998 889888777776566 39999999873 344454531 111221 1 1222344443 9999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC-Cc-c-hHHHHHHHHHhCCCCCCceEeec
Q 018314 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-NS-T-VPIAAEVFKKAGTYNEKKLFGVT 174 (358)
Q Consensus 104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~-d~-~-t~~~~~~~~~sg~~~~~kviG~t 174 (358)
++ + ..+-..++-..+++.++.+.+|- .. . ..+...+ +...+|.|+.
T Consensus 237 v~-~------------------~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li------~~~~~i~GS~ 285 (339)
T COG1064 237 VG-P------------------ATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLI------LKEISIVGSL 285 (339)
T ss_pred CC-h------------------hhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhh------hcCeEEEEEe
Confidence 85 2 12233444456788999999994 33 2 1121111 3457888983
No 417
>PRK06114 short chain dehydrogenase; Provisional
Probab=95.17 E-value=0.24 Score=45.67 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=64.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQA------- 93 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------- 93 (358)
.+.+.|+||+|.+|..++..|+..+. ++++.|.+.. .....++.+.. .++..+. +-.| +.++
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999886 8999997642 22233343322 1222221 1111 1222
Q ss_pred cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314 94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 94 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
+..-|++|.++|..... ..+. ...+..|+.- .+.+.+.+.+.. .+.+++++.-
T Consensus 84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~ 146 (254)
T PRK06114 84 LGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENG-GGSIVNIASM 146 (254)
T ss_pred cCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CcEEEEECch
Confidence 23459999999864321 1122 2234445433 355555554432 3455655443
No 418
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.17 E-value=0.11 Score=54.95 Aligned_cols=137 Identities=13% Similarity=0.147 Sum_probs=82.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcc----ccccCCCCEEEEc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIP 103 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~al~~aDiVIi~ 103 (358)
..+|.|+|. |.+|+.++..|...++ +++.+|.|+.. +..+.+... ++-.. +.+|. ...+++||.||++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g~--~v~~G-Dat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYGY--KVYYG-DATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCCC--eEEEe-eCCCHHHHHhcCCccCCEEEEE
Confidence 468999998 9999999999998887 89999987622 222333221 22221 12221 1347899999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-eeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHHH
Q 018314 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182 (358)
Q Consensus 104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv-~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~ 182 (358)
-+ |-+.-..++..+++++|+..++. +.||.+.- .++..| .+.++-=+...+..+-
T Consensus 472 ~~---------------d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~------~L~~~G---a~~vv~e~~es~l~l~ 527 (601)
T PRK03659 472 CN---------------EPEDTMKIVELCQQHFPHLHILARARGRVEAH------ELLQAG---VTQFSRETFSSALELG 527 (601)
T ss_pred eC---------------CHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHH------HHHhCC---CCEEEccHHHHHHHHH
Confidence 52 22233345666788899876654 45554321 245555 3445433443345555
Q ss_pred HHHHHHcCCCCCCC
Q 018314 183 TFYAGKANVNVAEV 196 (358)
Q Consensus 183 ~~la~~l~v~~~~v 196 (358)
...=..+|+++.++
T Consensus 528 ~~~L~~lg~~~~~~ 541 (601)
T PRK03659 528 RKTLVSLGMHPHQA 541 (601)
T ss_pred HHHHHHcCCCHHHH
Confidence 55556777776555
No 419
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.17 E-value=0.081 Score=53.24 Aligned_cols=123 Identities=17% Similarity=0.231 Sum_probs=74.4
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHH-H-HhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVA-A-DVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~-~-dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~ 106 (358)
||.|+|. |..|.++|..|...+. +|...|..... ... . .+.... .++.+.+ .+ .+.+.++|+||.+.|+
T Consensus 1 ~~~~iG~-G~~G~a~a~~l~~~G~--~V~~sD~~~~~~~~~~~~~~~~~~---gi~~~~g-~~-~~~~~~~d~vv~sp~i 72 (433)
T TIGR01087 1 KILILGL-GKTGRAVARFLHKKGA--EVTVTDLKPNEELEPSMGQLRLNE---GSVLHTG-LH-LEDLNNADLVVKSPGI 72 (433)
T ss_pred CEEEEEe-CHhHHHHHHHHHHCCC--EEEEEeCCCCccchhHHHHHhhcc---CcEEEec-Cc-hHHhccCCEEEECCCC
Confidence 6899997 9999999999999988 89999986521 111 1 122111 2333323 23 3567899999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314 107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG 163 (358)
Q Consensus 107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg 163 (358)
|...- .......++++++.+. +.+.+.. +..+|-+|=..+ .+|.+++++++..|
T Consensus 73 ~~~~p-~~~~a~~~~i~i~~~~-e~~~~~~-~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 73 PPDHP-LVQAAAKRGIPVVGDI-ELFLRLV-PLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred CCCCH-HHHHHHHCCCcEEEHH-HHHHhhc-CCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 75321 1222234566666443 2222232 223455555544 67778888888776
No 420
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=95.16 E-value=0.063 Score=50.73 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=57.8
Q ss_pred EEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC--CCCEEEEcCCCCCC-
Q 018314 33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGVPRK- 109 (358)
Q Consensus 33 IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVIi~ag~~~~- 109 (358)
|+||+|++|++++..|...+. ++++..... ..|+.+ ..++.+.++ +.|+||++|+....
T Consensus 2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~------------~~~l~~~~~~~~~d~Vih~A~~~~~~ 63 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTR------------QADVEAFFAKEKPTYVILAAAKVGGI 63 (306)
T ss_pred cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCC------------HHHHHHHHhccCCCEEEEeeeeeccc
Confidence 789999999999999988775 444443221 112211 112333333 57999999975321
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Q 018314 110 --PGMTRDDLFNINAGIVKDLCSAIAKYCPN 138 (358)
Q Consensus 110 --~g~~r~~~~~~N~~i~~~i~~~i~~~~p~ 138 (358)
......+....|......+.+.+++....
T Consensus 64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~ 94 (306)
T PLN02725 64 HANMTYPADFIRENLQIQTNVIDAAYRHGVK 94 (306)
T ss_pred chhhhCcHHHHHHHhHHHHHHHHHHHHcCCC
Confidence 12234567889999999999999987643
No 421
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.15 E-value=0.099 Score=52.26 Aligned_cols=36 Identities=28% Similarity=0.572 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+..||.|+|+ |++|+.++..|+..|+ ++|.|+|-+.
T Consensus 41 ~~~~VlviG~-GGlGs~va~~La~~Gv-g~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGA-GGLGSPTLLYLAAAGV-GTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence 3459999998 9999999999999985 5899999864
No 422
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.14 E-value=0.11 Score=51.28 Aligned_cols=35 Identities=37% Similarity=0.627 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
..||.|+|+ |++|+.++..|+..|+ ++|.|+|.+.
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gv-g~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGV-GHITIIDDDT 62 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 459999998 9999999999999885 5899999864
No 423
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.12 E-value=0.056 Score=48.69 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=51.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHH--HHHhhcCCCCccEEEEecCCccccccCCCCEEEE
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVII 102 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~--~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi 102 (358)
+-..++|+|||.+.-||..++.+|...+- .+..+|++...-. ...+.|...+ ..- -+.++.+.++.||+||.
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t~--~~~--~~~~l~~~~~~ADIVIs 132 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKHH--VTD--EEAMTLDCLSQSDVVIT 132 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCccccccccccccccccc--ccc--hhhHHHHHhhhCCEEEE
Confidence 45567999999988999999999998775 8999998651100 0011121110 000 01125677899999999
Q ss_pred cCCCCC
Q 018314 103 PAGVPR 108 (358)
Q Consensus 103 ~ag~~~ 108 (358)
+.|.|.
T Consensus 133 AvG~~~ 138 (197)
T cd01079 133 GVPSPN 138 (197)
T ss_pred ccCCCC
Confidence 998764
No 424
>PRK07035 short chain dehydrogenase; Provisional
Probab=95.05 E-value=0.31 Score=44.68 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.++|.|+||+|++|..++..|...+. .|++.|.+.
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~ 42 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKL 42 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999998886 899999865
No 425
>PRK06953 short chain dehydrogenase; Provisional
Probab=95.05 E-value=0.1 Score=47.18 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=30.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
|+++.|+||+|.+|+.++..|+..+. +|+++|.+.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~ 35 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGW--RVIATARDA 35 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCH
Confidence 34799999999999999999988876 899999865
No 426
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.05 E-value=0.14 Score=52.31 Aligned_cols=126 Identities=17% Similarity=0.129 Sum_probs=77.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
.+||+|+|. |.-|.+.+..|...+. ++.++|.++. .....+|.+.. ..+. +..+ .+.+.++|+||.+.|
T Consensus 8 ~~~v~v~G~-G~sG~~~~~~l~~~g~--~v~~~d~~~~~~~~~~~~l~~~~--~~~~---~~~~-~~~~~~~d~vV~Spg 78 (468)
T PRK04690 8 GRRVALWGW-GREGRAAYRALRAHLP--AQALTLFCNAVEAREVGALADAA--LLVE---TEAS-AQRLAAFDVVVKSPG 78 (468)
T ss_pred CCEEEEEcc-chhhHHHHHHHHHcCC--EEEEEcCCCcccchHHHHHhhcC--EEEe---CCCC-hHHccCCCEEEECCC
Confidence 458999998 9999999999998887 8999997652 11222344311 1111 1122 355789999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC----CCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC----PNAIVNMISNPVN--STVPIAAEVFKKAG 163 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~iiv~tNP~d--~~t~~~~~~~~~sg 163 (358)
+|...-. .......+++++.++--.+.... ....+|-+|=..+ .+|.+++++++..|
T Consensus 79 I~~~~p~-~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 141 (468)
T PRK04690 79 ISPYRPE-ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG 141 (468)
T ss_pred CCCCCHH-HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 8753221 22233566777754443232221 1123455555544 77788888888766
No 427
>PRK06484 short chain dehydrogenase; Validated
Probab=95.04 E-value=0.14 Score=52.62 Aligned_cols=157 Identities=19% Similarity=0.223 Sum_probs=81.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEE-ecCCccccc-------cCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY-MGNDQLGQA-------LED 96 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~-~~~~d~~~a-------l~~ 96 (358)
..+++.|+||+|.+|..++..|+..+. +|++.|+++. .....++.... ..+..- ++.++..+. +..
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~g~ 343 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDEH--LSVQADITDEAAVESAFAQIQARWGR 343 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCce--eEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 356899999999999999999999886 8999998652 22222221110 001110 001112122 245
Q ss_pred CCEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCC
Q 018314 97 SDVVIIPAGVPR--KP--GMTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK 168 (358)
Q Consensus 97 aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~ 168 (358)
-|++|..||... .+ ..+. ...+..|+.-...+.+.+..+ ...+.||+++...... + .+..
T Consensus 344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~-~~~~ 411 (520)
T PRK06484 344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL-----------A-LPPR 411 (520)
T ss_pred CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC-----------C-CCCC
Confidence 799999998742 22 2222 233455544443333333322 2346777776654321 1 2333
Q ss_pred ceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314 169 KLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201 (358)
Q Consensus 169 kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~ 201 (358)
-.++.+.-.-..+-+.+++.++ +..|++..+
T Consensus 412 ~~Y~asKaal~~l~~~la~e~~--~~gI~vn~v 442 (520)
T PRK06484 412 NAYCASKAAVTMLSRSLACEWA--PAGIRVNTV 442 (520)
T ss_pred chhHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence 3344433223345566666653 445555444
No 428
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.03 E-value=0.23 Score=46.71 Aligned_cols=111 Identities=19% Similarity=0.233 Sum_probs=58.0
Q ss_pred EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc------cCCCC
Q 018314 31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA------LEDSD 98 (358)
Q Consensus 31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------l~~aD 98 (358)
+.|+|| |++|..++..|. .+. +|++.|.++. .....++.+.. .++..+. +-.| ..+. +...|
T Consensus 5 ~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 5 VVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred EEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 555665 899999999886 554 8999998652 22223333211 1222221 1112 1111 24689
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCC
Q 018314 99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV 148 (358)
Q Consensus 99 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~ 148 (358)
++|..||.... ..+-...+..|+.-...+.+.+.++ .+++.+++++...
T Consensus 79 ~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~ 128 (275)
T PRK06940 79 GLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQS 128 (275)
T ss_pred EEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecc
Confidence 99999997521 2233445566654444444433332 1234445555444
No 429
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.01 E-value=0.08 Score=53.36 Aligned_cols=104 Identities=18% Similarity=0.305 Sum_probs=63.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+..+|+|+|+ |.+|..++..|...+. .+|+++|.+... ..+.++.. ..+. ..++.+++.++|+||.+.
T Consensus 179 ~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g~----~~i~----~~~l~~~l~~aDvVi~aT 248 (417)
T TIGR01035 179 KGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELGG----EAVK----FEDLEEYLAEADIVISST 248 (417)
T ss_pred cCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC----eEee----HHHHHHHHhhCCEEEECC
Confidence 4569999998 9999999998888763 489999986522 22222221 1111 135567889999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcch
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV 152 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t 152 (358)
+.|..- .+ .+.++.. +..-....+++-+++|-|+=.
T Consensus 249 ~s~~~i-i~--------~e~l~~~---~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 249 GAPHPI-VS--------KEDVERA---LRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred CCCCce-Ec--------HHHHHHH---HhcCCCCeEEEEeCCCCCCCh
Confidence 654311 11 1111111 111112457888899988654
No 430
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.01 E-value=0.3 Score=44.26 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=46.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
-+.+||.|||+ |.||...+..|...+. +|++++.+.... ..++.+.. .+....... .++.+.++|+||.+-+
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~~-l~~l~~~~---~i~~~~~~~-~~~~l~~adlViaaT~ 79 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTEN-LVKLVEEG---KIRWKQKEF-EPSDIVDAFLVIAATN 79 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCHH-HHHHHhCC---CEEEEecCC-ChhhcCCceEEEEcCC
Confidence 34569999998 9999999998888875 899998643222 22333221 233221111 1357899999888753
No 431
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.99 E-value=0.071 Score=50.86 Aligned_cols=74 Identities=9% Similarity=0.112 Sum_probs=47.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+..++.|+|| |.++.++++.|...+. .+|.+++++.. +..+.++.... .+......+++.+.+.++|+||.+-
T Consensus 124 ~~k~vlvlGa-GGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~~---~~~~~~~~~~~~~~~~~~DiVInaT 198 (282)
T TIGR01809 124 AGFRGLVIGA-GGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQVG---VITRLEGDSGGLAIEKAAEVLVSTV 198 (282)
T ss_pred CCceEEEEcC-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhcC---cceeccchhhhhhcccCCCEEEECC
Confidence 3568999998 9999999999998774 58999998652 33333332211 1221111122335668999999974
Q ss_pred C
Q 018314 105 G 105 (358)
Q Consensus 105 g 105 (358)
.
T Consensus 199 p 199 (282)
T TIGR01809 199 P 199 (282)
T ss_pred C
Confidence 3
No 432
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.99 E-value=0.23 Score=47.04 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=30.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
..+|+|+|+ |.||+.++..|+..|+ .+|.|+|.+.
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar~GV-g~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALARTGI-GAITLIDMDD 64 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 348999998 9999999999999985 5899999864
No 433
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.99 E-value=0.17 Score=48.45 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=50.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---------------------HHHHHHhhcCCCCccEEEEec
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------------------PGVAADVGHINTRSEVAGYMG 86 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------------------~~~~~dl~~~~~~~~v~~~~~ 86 (358)
..||.|+|+ |++|..++..|++.|+ ..|.|+|.+.. +.-+..|.......+++.+..
T Consensus 19 ~s~VLIvG~-gGLG~EiaKnLalaGV-g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 96 (286)
T cd01491 19 KSNVLISGL-GGLGVEIAKNLILAGV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG 96 (286)
T ss_pred cCcEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 458999998 9999999999999996 68999998640 011112222233345555443
Q ss_pred CCccccccCCCCEEEEcC
Q 018314 87 NDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 87 ~~d~~~al~~aDiVIi~a 104 (358)
..+ .+.+.+.|+||.+.
T Consensus 97 ~~~-~~~l~~fdvVV~~~ 113 (286)
T cd01491 97 PLT-TDELLKFQVVVLTD 113 (286)
T ss_pred cCC-HHHHhcCCEEEEec
Confidence 222 46789999998885
No 434
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.98 E-value=0.06 Score=47.45 Aligned_cols=56 Identities=27% Similarity=0.507 Sum_probs=43.4
Q ss_pred CCceEEEEcCCCC-hHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 27 PDRKVAVLGAAGG-IGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 27 ~~~KI~IiGA~G~-vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
...||.|+|+ |. +|..++..|...+. ++.+.+.+. +++.+.+++||+||.+.+
T Consensus 43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 43 AGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcCC
Confidence 4569999998 86 58889999988776 688888531 235567899999999887
Q ss_pred CCC
Q 018314 106 VPR 108 (358)
Q Consensus 106 ~~~ 108 (358)
.|.
T Consensus 97 ~~~ 99 (168)
T cd01080 97 KPG 99 (168)
T ss_pred CCc
Confidence 653
No 435
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=94.97 E-value=0.24 Score=45.35 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+.+++.|+||+|.+|+.++..|+..+. +++++|.+.
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~ 42 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF 42 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence 346899999999999999999998887 899998764
No 436
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.95 E-value=0.088 Score=49.19 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=30.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+++.|+||+|++|..++..|+..+. +|++.+.+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~ 35 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA 35 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5799999999999999999998886 899999765
No 437
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.94 E-value=0.17 Score=52.27 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=63.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCC--CCccE-----EEEe--cCCcc-----
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHIN--TRSEV-----AGYM--GNDQL----- 90 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~--~~~~v-----~~~~--~~~d~----- 90 (358)
.++.||.|+|+ |.+|...+..+...|. +|+.+|+++ ...++..+.... .+..- .+|. -+.+.
T Consensus 163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 163 VPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 46789999998 9999998888887775 799999987 344444443110 00000 0000 01111
Q ss_pred ---ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 91 ---GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 91 ---~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
.+.++++|+||.++|.|.++-- .-+.++ .++...|.+.++.++.+
T Consensus 240 ~~~~~~~~gaDVVIetag~pg~~aP---------~lit~~---~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIPGKPAP---------KLITAE---MVASMKPGSVIVDLAAE 287 (509)
T ss_pred HHHHhccCCCCEEEECCCCCcccCc---------chHHHH---HHHhcCCCCEEEEEccC
Confidence 1224789999999998653221 001133 33444578888877764
No 438
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=94.93 E-value=0.43 Score=43.27 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
++|.|+||+|.+|+.++..|+..+. .+++.|.+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~ 36 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSG 36 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCc
Confidence 3789999999999999999998886 899998874
No 439
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.91 E-value=0.55 Score=42.84 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=27.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEE-ecC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIA 63 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~-D~~ 63 (358)
.+++.|+||+|.+|..++..|+..+. ++++. +.+
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~ 38 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARS 38 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCC
Confidence 35899999999999999999999886 66654 443
No 440
>PRK06125 short chain dehydrogenase; Provisional
Probab=94.90 E-value=1 Score=41.46 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc------ccccCCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL------GQALEDS 97 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~------~~al~~a 97 (358)
+.+++.|+||+|.+|..++..|+..+. +|++.|.+.. .....++.... ..++.... +-+|. .+.+...
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 346899999999999999999998886 8999998652 22222333211 11222221 11121 1134579
Q ss_pred CEEEEcCCCCC-CC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314 98 DVVIIPAGVPR-KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 98 DiVIi~ag~~~-~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
|++|.++|... .+ ..+. ...+..|+. +.+.+.+.+.+.. .+.+++++.
T Consensus 83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss 140 (259)
T PRK06125 83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG 140 (259)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence 99999998642 11 1222 223444544 4455566665443 345665544
No 441
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=94.89 E-value=0.053 Score=53.31 Aligned_cols=74 Identities=26% Similarity=0.314 Sum_probs=43.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEE-EEecCCcHHHHH-H-hhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAA-D-VGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~-L~D~~~~~~~~~-d-l~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
+||+|+||+|.+|..++..|...+.. +++ +++.+...++.. + ..+......+.. . ..|..+.++++|+|+++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECCC
Confidence 58999999999999999998877644 666 777654222211 1 111111001121 1 1133344468999999753
No 442
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.88 E-value=0.047 Score=53.67 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=47.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
..++||+|+||+|.+|..+...|..++ +..++.++......++..+... ..+... ..+ .+++.++|+||+++
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v~--~~~-~~~~~~~D~vf~a~ 77 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTVE--ELT-EDSFDGVDIALFSA 77 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEEE--eCC-HHHHcCCCEEEECC
Confidence 356799999999999999998888754 3457776655443333222221 122221 112 25678999999987
Q ss_pred C
Q 018314 105 G 105 (358)
Q Consensus 105 g 105 (358)
+
T Consensus 78 p 78 (344)
T PLN02383 78 G 78 (344)
T ss_pred C
Confidence 5
No 443
>PRK08177 short chain dehydrogenase; Provisional
Probab=94.88 E-value=0.15 Score=46.10 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=30.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
++|.|+||+|.+|+.++..|+..+. +|+++|.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 35 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP 35 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence 5799999999999999999999886 899999876
No 444
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.86 E-value=0.12 Score=48.02 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=31.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+.+++.|+||+|.+|..++..|+..+. +|++.|.++
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA 40 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 345899999999999999999999887 899999865
No 445
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.86 E-value=0.094 Score=49.89 Aligned_cols=103 Identities=23% Similarity=0.274 Sum_probs=46.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhc--CCCCccEEEEecC-CccccccCCCCEEEE
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGH--INTRSEVAGYMGN-DQLGQALEDSDVVII 102 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~--~~~~~~v~~~~~~-~d~~~al~~aDiVIi 102 (358)
.+.||+.||. |..-.+........+....++-+|+++ +...+..+-. .....+++..++. .+...++++.|+|++
T Consensus 120 ~p~rVaFIGS-GPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGS-GPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE----SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcC-CCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 4669999996 998888666555545445789999987 3333333322 1112345544321 233346789999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEE
Q 018314 103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVN 142 (358)
Q Consensus 103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~ii 142 (358)
+|-+ |++ .+-..++...+.++. |++.++
T Consensus 199 AalV----g~~--------~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 199 AALV----GMD--------AEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp -TT-----S------------SHHHHHHHHHHHS-TTSEEE
T ss_pred hhhc----ccc--------cchHHHHHHHHHhhCCCCcEEE
Confidence 8732 221 223344555555554 566554
No 446
>PRK07201 short chain dehydrogenase; Provisional
Probab=94.85 E-value=0.27 Score=51.93 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=65.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------ 94 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------ 94 (358)
+.+++.|+||+|++|..++..|+..+. +|++++.++. .....++.... .++..+. +-.| ..+++
T Consensus 370 ~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 370 VGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999886 8999998752 22233333221 1232221 1122 22222
Q ss_pred -CCCCEEEEcCCCCCCCC----C----CHHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeC
Q 018314 95 -EDSDVVIIPAGVPRKPG----M----TRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 95 -~~aDiVIi~ag~~~~~g----~----~r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tN 146 (358)
...|++|..||...... . +-...+..|+.- ++.+.+.+++.. .+.+|+++.
T Consensus 446 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS 509 (657)
T PRK07201 446 HGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERR-FGHVVNVSS 509 (657)
T ss_pred cCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCEEEEECC
Confidence 36899999998642111 1 112334555443 444555555443 455666654
No 447
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.85 E-value=0.05 Score=53.26 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=45.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
+|+||+|+||+|.+|..+.-.|...+ ...++.++-..+..|+...+.. ..+... . .+ ..+++++|+|+++.+
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~-~-~~-~~~~~~vD~vFla~p 75 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVR-E-VD-SFDFSQVQLAFFAAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEe-e-CC-hHHhcCCCEEEEcCC
Confidence 45799999999999999999998653 3457777765443333333332 122221 1 12 134689999999763
No 448
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.85 E-value=0.38 Score=43.85 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~ 62 (358)
+++|.|+||+|++|++++..|+..+. ++++...
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~ 38 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK 38 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence 46899999999999999999998886 6666543
No 449
>PRK07578 short chain dehydrogenase; Provisional
Probab=94.83 E-value=0.33 Score=42.95 Aligned_cols=66 Identities=21% Similarity=0.299 Sum_probs=42.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~ 107 (358)
|++.|+||+|.+|..++..|+.. .+|++.+.+.. ....|+.+.. .++ ...+.+...|++|..+|..
T Consensus 1 ~~vlItGas~giG~~la~~l~~~---~~vi~~~r~~~-~~~~D~~~~~---~~~------~~~~~~~~id~lv~~ag~~ 66 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR---HEVITAGRSSG-DVQVDITDPA---SIR------ALFEKVGKVDAVVSAAGKV 66 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc---CcEEEEecCCC-ceEecCCChH---HHH------HHHHhcCCCCEEEECCCCC
Confidence 47999999999999999999887 38898887541 1112222211 000 0111234689999999864
No 450
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.82 E-value=0.12 Score=53.59 Aligned_cols=66 Identities=23% Similarity=0.345 Sum_probs=47.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
.-..++|+|+|. |.+|+.++..+..-+. +|+.||.........++ .+... ++.+.++.||+|++..
T Consensus 137 ~l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~~----~l~ell~~aDiV~l~l 202 (526)
T PRK13581 137 ELYGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVELV----SLDELLARADFITLHT 202 (526)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEEE----cHHHHHhhCCEEEEcc
Confidence 445679999997 9999999999986665 99999975422222211 12221 3567899999999975
No 451
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.82 E-value=0.1 Score=52.62 Aligned_cols=104 Identities=24% Similarity=0.391 Sum_probs=63.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+..+|+|+|+ |.+|..++..|...+ ..+|+++|++... ..+.++. ..+.. ..++.+++.++|+||.+.
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G-~~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVI~aT 250 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKG-VRKITVANRTLERAEELAEEFG-----GEAIP---LDELPEALAEADIVISST 250 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHcC-----CcEee---HHHHHHHhccCCEEEECC
Confidence 4579999998 999999998888766 3589999986522 2233222 11111 134567789999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHH-hhCCCeEEEEeeCCCCcch
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIA-KYCPNAIVNMISNPVNSTV 152 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~-~~~p~a~iiv~tNP~d~~t 152 (358)
|.|... .+ .+.++. .+. +...+.+++-+++|-|+=.
T Consensus 251 ~s~~~~-i~--------~~~l~~---~~~~~~~~~~vviDla~Prdid~ 287 (423)
T PRK00045 251 GAPHPI-IG--------KGMVER---ALKARRHRPLLLVDLAVPRDIEP 287 (423)
T ss_pred CCCCcE-Ec--------HHHHHH---HHhhccCCCeEEEEeCCCCCCcc
Confidence 654311 11 111111 111 1124567888999988654
No 452
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.79 E-value=0.12 Score=52.23 Aligned_cols=69 Identities=23% Similarity=0.290 Sum_probs=44.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc-CCCCccEEEEec--CCccccc-cCCCCEEEEcC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYMG--NDQLGQA-LEDSDVVIIPA 104 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~-~~~~~~v~~~~~--~~d~~~a-l~~aDiVIi~a 104 (358)
|||.|+|+ |.+|..++..|...+. +++++|.++... ..+.+ .. .++..... ...++++ +.++|.||++.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~--~~~~~~~~--~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERL--RRLQDRLD--VRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHhhcC--EEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 68999998 9999999999988887 899999875221 22221 11 01111111 1223334 78999999975
No 453
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=94.78 E-value=0.082 Score=50.15 Aligned_cols=70 Identities=26% Similarity=0.284 Sum_probs=44.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhC-CCCcEEE-EEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~-L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+++||+|||. |.+|..++..|... +-. +++ ++|.+... +.++.... . ....+ +|+++.+.++|+|++++
T Consensus 5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~-el~aV~dr~~~~--a~~~a~~~-g-~~~~~---~~~eell~~~D~Vvi~t 75 (271)
T PRK13302 5 PELRVAIAGL-GAIGKAIAQALDRGLPGL-TLSAVAVRDPQR--HADFIWGL-R-RPPPV---VPLDQLATHADIVVEAA 75 (271)
T ss_pred CeeEEEEECc-cHHHHHHHHHHHhcCCCe-EEEEEECCCHHH--HHHHHHhc-C-CCccc---CCHHHHhcCCCEEEECC
Confidence 4589999998 99999999888764 322 554 78876522 22222111 0 01111 34556678999999997
Q ss_pred C
Q 018314 105 G 105 (358)
Q Consensus 105 g 105 (358)
.
T Consensus 76 p 76 (271)
T PRK13302 76 P 76 (271)
T ss_pred C
Confidence 4
No 454
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.77 E-value=0.38 Score=46.04 Aligned_cols=78 Identities=23% Similarity=0.329 Sum_probs=49.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---cccc------
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA------ 93 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------ 93 (358)
+.+++.|+||+|++|..++..|+..+. ++++.|... ....+.++.... .++.... +-.| ..+.
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAAG--AKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999886 899998754 222233343221 1232221 1111 1111
Q ss_pred cCCCCEEEEcCCCCC
Q 018314 94 LEDSDVVIIPAGVPR 108 (358)
Q Consensus 94 l~~aDiVIi~ag~~~ 108 (358)
+...|++|..||...
T Consensus 87 ~g~iD~li~nAG~~~ 101 (306)
T PRK07792 87 LGGLDIVVNNAGITR 101 (306)
T ss_pred hCCCCEEEECCCCCC
Confidence 246899999999754
No 455
>PRK07877 hypothetical protein; Provisional
Probab=94.77 E-value=0.11 Score=55.71 Aligned_cols=75 Identities=21% Similarity=0.347 Sum_probs=50.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-----cHHH---------------HHHhhcCCCCccEEEEec-
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGV---------------AADVGHINTRSEVAGYMG- 86 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~~~---------------~~dl~~~~~~~~v~~~~~- 86 (358)
..||+|+|+ | +|++++..|+..|++++|.|+|-+. ..-+ +..+.......+|+.+..
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 458999998 8 9999999999999778999999874 1111 111222222345555431
Q ss_pred --CCccccccCCCCEEEEcC
Q 018314 87 --NDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 87 --~~d~~~al~~aDiVIi~a 104 (358)
.++..+.++++|+||-+.
T Consensus 185 i~~~n~~~~l~~~DlVvD~~ 204 (722)
T PRK07877 185 LTEDNVDAFLDGLDVVVEEC 204 (722)
T ss_pred CCHHHHHHHhcCCCEEEECC
Confidence 134555678999999875
No 456
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.74 E-value=0.34 Score=43.85 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.++|.|+||+|.+|+.++..|+..+. +|++.+.++
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~ 39 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE 39 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999998887 899999865
No 457
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.74 E-value=0.33 Score=51.56 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=82.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcc----ccccCCCCEEEEc
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIP 103 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~al~~aDiVIi~ 103 (358)
..+|.|+|. |.+|+.++..|...+. +++++|.++.. +..+.+... ++-... .+|. ...+.+||.||++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g~--~v~~GD-at~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFGM--KVFYGD-ATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcCC--eEEEEe-CCCHHHHHhcCCCcCCEEEEE
Confidence 468999998 9999999999998887 89999987622 222322221 222212 2222 1356799999988
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHHHH
Q 018314 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT 183 (358)
Q Consensus 104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~~ 183 (358)
-..+ +.| ..++..+++..|+..+++-++-..-.. .++..| -+.++--+...+.++-+
T Consensus 472 ~~d~-----------~~n----~~i~~~ar~~~p~~~iiaRa~d~~~~~-----~L~~~G---ad~v~~e~~e~sl~l~~ 528 (621)
T PRK03562 472 IDDP-----------QTS----LQLVELVKEHFPHLQIIARARDVDHYI-----RLRQAG---VEKPERETFEGALKSGR 528 (621)
T ss_pred eCCH-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHHHH-----HHHHCC---CCEEehhhHhHHHHHHH
Confidence 5211 234 345556677788876655443332211 234555 34454445444566666
Q ss_pred HHHHHcCCCCCCC
Q 018314 184 FYAGKANVNVAEV 196 (358)
Q Consensus 184 ~la~~l~v~~~~v 196 (358)
.+-+.+|++++++
T Consensus 529 ~~L~~lg~~~~~~ 541 (621)
T PRK03562 529 LVLESLGLGPYEA 541 (621)
T ss_pred HHHHHcCCCHHHH
Confidence 6767887775443
No 458
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.73 E-value=0.09 Score=51.24 Aligned_cols=67 Identities=24% Similarity=0.396 Sum_probs=47.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+-..++|+|||. |.+|+.++..+..-+. +|..||+........ .+ .... ..++++-++.||||++..
T Consensus 139 el~gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~-----~~~~---~~~Ld~lL~~sDiv~lh~ 205 (324)
T COG0111 139 ELAGKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VD-----GVVG---VDSLDELLAEADILTLHL 205 (324)
T ss_pred cccCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--cc-----ccee---cccHHHHHhhCCEEEEcC
Confidence 445679999998 9999999999987776 999999843221111 11 1111 245778899999999964
No 459
>PRK14851 hypothetical protein; Provisional
Probab=94.71 E-value=0.067 Score=57.15 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=50.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-----cHHH----------------HHHhhcCCCCccEEEEe
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGV----------------AADVGHINTRSEVAGYM 85 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~~~----------------~~dl~~~~~~~~v~~~~ 85 (358)
+..||.|+|+ |++|+.++..|+..|+ .+++|+|-+. ...+ +..+.+.....+|+.+.
T Consensus 42 ~~~~VlIvG~-GGlGs~va~~Lar~GV-G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~ 119 (679)
T PRK14851 42 AEAKVAIPGM-GGVGGVHLITMVRTGI-GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP 119 (679)
T ss_pred hcCeEEEECc-CHHHHHHHHHHHHhCC-CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 3569999998 9999999999999997 6999999764 1111 11222222234555543
Q ss_pred c---CCccccccCCCCEEEEcC
Q 018314 86 G---NDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 86 ~---~~d~~~al~~aDiVIi~a 104 (358)
. .++..+.++++|+||-+.
T Consensus 120 ~~i~~~n~~~~l~~~DvVid~~ 141 (679)
T PRK14851 120 AGINADNMDAFLDGVDVVLDGL 141 (679)
T ss_pred cCCChHHHHHHHhCCCEEEECC
Confidence 1 134445689999988653
No 460
>PRK07411 hypothetical protein; Validated
Probab=94.68 E-value=0.083 Score=52.79 Aligned_cols=36 Identities=28% Similarity=0.588 Sum_probs=31.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+..||.|+|+ |++|+.++..|+..|+ .+|.|+|-+.
T Consensus 37 ~~~~VlivG~-GGlG~~va~~La~~Gv-g~l~lvD~D~ 72 (390)
T PRK07411 37 KAASVLCIGT-GGLGSPLLLYLAAAGI-GRIGIVDFDV 72 (390)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 3559999998 9999999999999996 6999999864
No 461
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.61 E-value=0.41 Score=43.46 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=47.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
+..||.|||+ |.+|..-+..|...+. +|+++|.+... ...++.+.. +++......+ ...+.++|+||.+-+
T Consensus 8 ~gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~~-~l~~l~~~~---~i~~~~~~~~-~~dl~~~~lVi~at~ 78 (205)
T TIGR01470 8 EGRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELES-ELTLLAEQG---GITWLARCFD-ADILEGAFLVIAATD 78 (205)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCCH-HHHHHHHcC---CEEEEeCCCC-HHHhCCcEEEEECCC
Confidence 3459999998 9999999988888775 89999976432 222333222 3443322222 356899999988754
No 462
>PLN00203 glutamyl-tRNA reductase
Probab=94.57 E-value=0.12 Score=53.66 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=48.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
..||+|||+ |.+|..++..|...+. .+|++++++... ..+..+. . ..+... ..+++.+++.+||+||.+-+
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~--g--~~i~~~-~~~dl~~al~~aDVVIsAT~ 338 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFP--D--VEIIYK-PLDEMLACAAEADVVFTSTS 338 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhC--C--CceEee-cHhhHHHHHhcCCEEEEccC
Confidence 469999998 9999999988887763 579999987522 2222221 1 122221 12455678999999998754
Q ss_pred C
Q 018314 106 V 106 (358)
Q Consensus 106 ~ 106 (358)
.
T Consensus 339 s 339 (519)
T PLN00203 339 S 339 (519)
T ss_pred C
Confidence 3
No 463
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=94.56 E-value=0.11 Score=51.80 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=44.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
-..++|+|||. |+||+.++..+..-|. ++..||..... . + . ... ..++++.++.||+|++..
T Consensus 114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~-~-----~-~---~~~----~~~L~ell~~sDiI~lh~ 175 (378)
T PRK15438 114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD-R-----G-D---EGD----FRSLDELVQEADILTFHT 175 (378)
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc-c-----c-c---ccc----cCCHHHHHhhCCEEEEeC
Confidence 45679999998 9999999999987666 99999964211 0 0 0 011 134678889999999864
No 464
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=94.55 E-value=0.091 Score=52.35 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=44.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
-..++|+|||. |.||+.++..+...|. +++.||...... . . .... .++++.+++||+|++..
T Consensus 114 l~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~~-----~--~---~~~~----~~l~ell~~aDiV~lh~ 175 (381)
T PRK00257 114 LAERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQEA-----E--G---DGDF----VSLERILEECDVISLHT 175 (381)
T ss_pred cCcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCccccc-----c--c---Cccc----cCHHHHHhhCCEEEEeC
Confidence 34579999998 9999999999987776 999999753110 0 0 1111 24667889999999974
No 465
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.55 E-value=0.024 Score=54.81 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=48.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecC-CcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIA-NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~-~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
.++|+| ||+|.||..+...|.++++ .++++|++.. ...++...+.. ..+....-+ ++++++.|++++ +|
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g----~~~~V~~l~---~~~f~~vDia~f-ag 73 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNN----KAVEQIAPE---EVEWADFNYVFF-AG 73 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECC----EEEEEEECC---ccCcccCCEEEE-cC
Confidence 468999 9999999999999999874 7899999986 44443333322 123332211 357899999999 65
No 466
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=94.55 E-value=0.3 Score=46.84 Aligned_cols=154 Identities=16% Similarity=0.110 Sum_probs=91.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c--HHHHHHhhcCCCCccEEEEec----CCccccccC--CCCE
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGVAADVGHINTRSEVAGYMG----NDQLGQALE--DSDV 99 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~--~aDi 99 (358)
|+|.|+|++|++|+++...+.......+|+-+|.-. + .....++.+.. +.+...+ ...+.+.++ +.|.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~---~~~fv~~DI~D~~~v~~~~~~~~~D~ 77 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSP---RYRFVQGDICDRELVDRLFKEYQPDA 77 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCC---CceEEeccccCHHHHHHHHHhcCCCe
Confidence 589999999999999998777766556789999754 2 22233444432 2222211 122234455 6899
Q ss_pred EEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-eCCC------C--cchHHHHHHHHHhCCCCCC
Q 018314 100 VIIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPV------N--STVPIAAEVFKKAGTYNEK 168 (358)
Q Consensus 100 VIi~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~-tNP~------d--~~t~~~~~~~~~sg~~~~~ 168 (358)
|+..|....- .=..-.++++.|+--...+.+..+++...-.++=+ |.-+ + ..| ..++ +.|+
T Consensus 78 VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~Ft-------E~tp-~~Ps 149 (340)
T COG1088 78 VVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFT-------ETTP-YNPS 149 (340)
T ss_pred EEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcc-------cCCC-CCCC
Confidence 9998753221 11123678899999999999999999754223322 3222 1 121 1233 6676
Q ss_pred ceEeeccccHHHHHHHHHHHcCCCC
Q 018314 169 KLFGVTTLDVVRAKTFYAGKANVNV 193 (358)
Q Consensus 169 kviG~t~lds~R~~~~la~~l~v~~ 193 (358)
.-+.-+.-.+--|-+...+.+|++.
T Consensus 150 SPYSASKAasD~lVray~~TYglp~ 174 (340)
T COG1088 150 SPYSASKAASDLLVRAYVRTYGLPA 174 (340)
T ss_pred CCcchhhhhHHHHHHHHHHHcCCce
Confidence 6666543223334555567777754
No 467
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=94.51 E-value=0.33 Score=44.34 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=61.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------c
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L 94 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l 94 (358)
++|.|+||+|++|+.++..|+..+. ++++.+.+. ......++.... .++..+. +.+| ..++ +
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGW--SVGINYARDAAAAEETADAVRAAG--GRACVVAGDVANEADVIAMFDAVQSAF 78 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 4799999999999999999998886 777765433 222223333211 1222221 1111 1111 2
Q ss_pred CCCCEEEEcCCCCC--CC--CCCHH---HHHHHHHHH----HHHHHHHHHhhC--CCeEEEEeeCCC
Q 018314 95 EDSDVVIIPAGVPR--KP--GMTRD---DLFNINAGI----VKDLCSAIAKYC--PNAIVNMISNPV 148 (358)
Q Consensus 95 ~~aDiVIi~ag~~~--~~--g~~r~---~~~~~N~~i----~~~i~~~i~~~~--p~a~iiv~tNP~ 148 (358)
...|+||..+|... .+ ..+.. ..+..|..- ++.+.+.+.... +.+.+|+++...
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~ 145 (248)
T PRK06947 79 GRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIA 145 (248)
T ss_pred CCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchh
Confidence 46899999998532 11 22222 224445433 344455444322 245666666543
No 468
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=94.49 E-value=0.25 Score=50.13 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=73.8
Q ss_pred eEEEEcCCCChH-HHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314 30 KVAVLGAAGGIG-QPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR 108 (358)
Q Consensus 30 KI~IiGA~G~vG-~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~ 108 (358)
+|-.||- |++| +.+|..|...|. +|...|.........+|.... ++.+.+ .+....+.++|+||.+.|+|.
T Consensus 1 ~~hfigi-gG~gm~~la~~l~~~G~--~V~~~D~~~~~~~~~~l~~~g----i~~~~~-~~~~~~~~~~d~vV~SpgI~~ 72 (448)
T TIGR01081 1 HIHILGI-CGTFMGGLAMIAKQLGH--EVTGSDANVYPPMSTQLEAQG----IEIIEG-FDAAQLEPKPDLVVIGNAMKR 72 (448)
T ss_pred CEEEEEE-CHHhHHHHHHHHHhCCC--EEEEECCCCCcHHHHHHHHCC----CEEeCC-CCHHHCCCCCCEEEECCCCCC
Confidence 4678897 8888 667888888887 899999865221112343322 233222 222233457999999999874
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhCCCCCC
Q 018314 109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEK 168 (358)
Q Consensus 109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg~~~~~ 168 (358)
.. .........|++++.++--..+...+.-.+|-+|=.++ .+|.+++++++..| +++.
T Consensus 73 ~~-~~~~~a~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g-~~~~ 132 (448)
T TIGR01081 73 GN-PCVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCG-LKPG 132 (448)
T ss_pred CC-HHHHHHHHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC-CCCc
Confidence 21 12222335667777555432221111112455555554 78888888888777 5543
No 469
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.48 E-value=0.51 Score=41.01 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=44.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
-+.+||.|+|| |.||...+..|...+. +|++++.+-.. ...++. .+......-+ ++.+.++|+||.+-
T Consensus 11 l~~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~-~l~~l~------~i~~~~~~~~-~~dl~~a~lViaaT 78 (157)
T PRK06719 11 LHNKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICK-EMKELP------YITWKQKTFS-NDDIKDAHLIYAAT 78 (157)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCH-HHHhcc------CcEEEecccC-hhcCCCceEEEECC
Confidence 34569999998 9999999999988887 89999754332 222332 1111111111 35689999988874
No 470
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=94.47 E-value=0.19 Score=49.03 Aligned_cols=98 Identities=20% Similarity=0.296 Sum_probs=62.2
Q ss_pred ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEE
Q 018314 21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV 100 (358)
Q Consensus 21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV 100 (358)
+.......++++|+|. |.+|+.+|..+. ++..+|+.||.... -+..+.. ..+. .++++.++.||+|
T Consensus 139 ~~~~~l~gktvGIiG~-GrIG~avA~r~~--~Fgm~v~y~~~~~~-~~~~~~~------~~~y----~~l~ell~~sDii 204 (324)
T COG1052 139 LLGFDLRGKTLGIIGL-GRIGQAVARRLK--GFGMKVLYYDRSPN-PEAEKEL------GARY----VDLDELLAESDII 204 (324)
T ss_pred ccccCCCCCEEEEECC-CHHHHHHHHHHh--cCCCEEEEECCCCC-hHHHhhc------Ccee----ccHHHHHHhCCEE
Confidence 4444456789999997 999999999998 76679999998753 1111111 1222 1257889999999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145 (358)
Q Consensus 101 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t 145 (358)
++..-. .+ .|-.++- .+.+++..|.+++||++
T Consensus 205 ~l~~Pl--t~---------~T~hLin--~~~l~~mk~ga~lVNta 236 (324)
T COG1052 205 SLHCPL--TP---------ETRHLIN--AEELAKMKPGAILVNTA 236 (324)
T ss_pred EEeCCC--Ch---------HHhhhcC--HHHHHhCCCCeEEEECC
Confidence 997521 11 1111111 13455556788877653
No 471
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.39 E-value=0.15 Score=44.56 Aligned_cols=58 Identities=24% Similarity=0.464 Sum_probs=40.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
-..++|+|||.+..||..++.+|...+. .+.+.+.. +.|+++.++.||+||.++|
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G 88 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVG 88 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SS
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeec
Confidence 4567999999977899999999998764 55555432 2345667899999999988
Q ss_pred CCC
Q 018314 106 VPR 108 (358)
Q Consensus 106 ~~~ 108 (358)
.|.
T Consensus 89 ~~~ 91 (160)
T PF02882_consen 89 KPN 91 (160)
T ss_dssp STT
T ss_pred ccc
Confidence 764
No 472
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.38 E-value=0.098 Score=52.70 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=50.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP 107 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~ 107 (358)
.+||.|+|+ |.+|..++..|...+. .+|.++++.... +..|........... .+++.+.+.+||+||.+-+.|
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~g~-~~I~V~nRt~~r--a~~La~~~~~~~~~~---~~~l~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTALAP-KQIMLANRTIEK--AQKITSAFRNASAHY---LSELPQLIKKADIIIAAVNVL 253 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCC-CEEEEECCCHHH--HHHHHHHhcCCeEec---HHHHHHHhccCCEEEECcCCC
Confidence 458999998 9999999999988774 489999986422 222322110012221 245567899999999987765
Q ss_pred C
Q 018314 108 R 108 (358)
Q Consensus 108 ~ 108 (358)
.
T Consensus 254 ~ 254 (414)
T PRK13940 254 E 254 (414)
T ss_pred C
Confidence 4
No 473
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=94.38 E-value=0.21 Score=47.23 Aligned_cols=74 Identities=27% Similarity=0.280 Sum_probs=42.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC--CCccEEEEecCCccccccCCCCEEEEcC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
++||+|+|+.|.||..++..+...+-..=+..+|.........|+.... ....+..+ +|+++...++|+||...
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~---~d~~~l~~~~DvVIdfT 76 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVT---DDLEAVETDPDVLIDFT 76 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceee---CCHHHhcCCCCEEEECC
Confidence 4799999966999999999888766444455677432111111222111 01123332 34444335689998864
No 474
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.37 E-value=0.28 Score=50.40 Aligned_cols=126 Identities=18% Similarity=0.154 Sum_probs=75.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV 106 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~ 106 (358)
...||.|+|. |..|.+.+..|...+. ++..+|.+... ...+.+.. +....+. +..+.++++|+||.+.|+
T Consensus 11 ~~~~v~V~G~-G~sG~aa~~~L~~~G~--~v~~~D~~~~~--~~~l~~~g----~~~~~~~-~~~~~l~~~D~VV~SpGi 80 (488)
T PRK03369 11 PGAPVLVAGA-GVTGRAVLAALTRFGA--RPTVCDDDPDA--LRPHAERG----VATVSTS-DAVQQIADYALVVTSPGF 80 (488)
T ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCC--EEEEEcCCHHH--HHHHHhCC----CEEEcCc-chHhHhhcCCEEEECCCC
Confidence 4568999997 9999999988887786 89999965321 11233322 2222211 123557899999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHh-----hCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314 107 PRKPGMTRDDLFNINAGIVKDLCSAIAK-----YCPNAIVNMISNPVN--STVPIAAEVFKKAG 163 (358)
Q Consensus 107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~-----~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg 163 (358)
|...-. ....-.++++++.++--..+. +.+...+|-+|=.++ .+|.+++++++..|
T Consensus 81 ~~~~p~-~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g 143 (488)
T PRK03369 81 RPTAPV-LAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAG 143 (488)
T ss_pred CCCCHH-HHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 753211 122234566666554443222 222223455555554 77788888888766
No 475
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.37 E-value=0.2 Score=51.18 Aligned_cols=93 Identities=22% Similarity=0.248 Sum_probs=62.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH-HHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP 103 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ 103 (358)
....++|+|+|. |.||..++..+...+. +|..+|+++... .+.. + . .+. .++.++++.||+||.+
T Consensus 251 ~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~-G----~~~----~~leell~~ADIVI~a 316 (476)
T PTZ00075 251 MIAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--E-G----YQV----VTLEDVVETADIFVTA 316 (476)
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--c-C----cee----ccHHHHHhcCCEEEEC
Confidence 345679999998 9999999999987775 899998876322 2221 1 1 111 1345789999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148 (358)
Q Consensus 104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~ 148 (358)
.|.+. ++. .+.++...|.+++++++-..
T Consensus 317 tGt~~---------------iI~--~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 317 TGNKD---------------IIT--LEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred CCccc---------------ccC--HHHHhccCCCcEEEEcCCCc
Confidence 65211 111 23555567889999887663
No 476
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=94.36 E-value=0.32 Score=39.92 Aligned_cols=35 Identities=40% Similarity=0.495 Sum_probs=24.9
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
||+|+|++|.+|..++..+...+.+.-..+++.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~ 35 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASAR 35 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechh
Confidence 68999987999999988888865432233346543
No 477
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.36 E-value=0.25 Score=49.69 Aligned_cols=90 Identities=21% Similarity=0.284 Sum_probs=60.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
...+|+|+|+ |.+|..++..+...+. +|+.+|+++. ...+..+. . .+. +..++++++|+||.+.|
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~G---~--~~~------~~~e~v~~aDVVI~atG 266 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAMEG---Y--EVM------TMEEAVKEGDIFVTTTG 266 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhcC---C--EEc------cHHHHHcCCCEEEECCC
Confidence 4669999998 9999999999988886 7888998762 23333221 1 111 12467889999999875
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
.+ .++.. ..++...+.+++++++.+
T Consensus 267 ~~---------------~~i~~--~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 NK---------------DIITG--EHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CH---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence 32 11111 124445678899899876
No 478
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=94.33 E-value=0.15 Score=48.66 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=43.1
Q ss_pred EEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 33 IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
|||. |.+|..++..|...++ +|.+||+++.. ..++.... ... ++++.++++++|+||++.
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITML 60 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence 5897 9999999999998887 89999987522 22233221 121 234567899999999985
No 479
>PRK07577 short chain dehydrogenase; Provisional
Probab=94.33 E-value=0.18 Score=45.58 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.++|.|+||+|.+|..++..|+..+. ++++++.+.
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~ 37 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA 37 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 35899999999999999999998886 899999865
No 480
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.28 E-value=0.17 Score=47.56 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=29.4
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
||.|+||+|.+|+.++..|...+. +|+...++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~ 33 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSS 33 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCC
Confidence 589999999999999999998886 788888765
No 481
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.27 E-value=0.36 Score=44.67 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=30.2
Q ss_pred CCceEEEEcCC--CChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 27 PDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 27 ~~~KI~IiGA~--G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
+.+.+.|+||+ +.+|..++..|+..+. +|++.+.++
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~ 43 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND 43 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence 34579999997 5899999999999887 899988764
No 482
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.18 E-value=0.083 Score=51.72 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
+.+||+|+||+|.+|..+...|..+. +..+|.++..+...|+...+... .+.... . + +.++.++|+|+++.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~----~~~v~~-~-~-~~~~~~~Dvvf~a~p 75 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK----SVTVQD-A-A-EFDWSQAQLAFFVAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc----ceEEEe-C-c-hhhccCCCEEEECCC
Confidence 45799999999999999999998853 34588888665433443333211 233321 1 1 234579999999764
No 483
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.14 E-value=0.1 Score=51.85 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=49.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEE-EecCCccccccCCCCEEEEcCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~al~~aDiVIi~ag 105 (358)
++.||.|+|+ |.+|...+..+...+. +|..+|.+..... .+.... ...+.. +....++.+.++++|+||.+.+
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~~--~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRLR--QLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHhc-CceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 5678999998 9999999999988886 7999998752211 121111 011211 1111345677899999999875
Q ss_pred CC
Q 018314 106 VP 107 (358)
Q Consensus 106 ~~ 107 (358)
.|
T Consensus 240 ~~ 241 (370)
T TIGR00518 240 IP 241 (370)
T ss_pred cC
Confidence 54
No 484
>PRK14852 hypothetical protein; Provisional
Probab=94.13 E-value=0.11 Score=57.21 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=50.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-----cHHH----------------HHHhhcCCCCccEEEEe
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGV----------------AADVGHINTRSEVAGYM 85 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~~~----------------~~dl~~~~~~~~v~~~~ 85 (358)
+..||+|+|+ |++|+.++..|+..|+ ++|+|+|-+. ...+ +..+.+.....+|+.+.
T Consensus 331 ~~srVlVvGl-GGlGs~ia~~LAraGV-G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~ 408 (989)
T PRK14852 331 LRSRVAIAGL-GGVGGIHLMTLARTGI-GNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP 408 (989)
T ss_pred hcCcEEEECC-cHHHHHHHHHHHHcCC-CeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence 3569999998 9999999999999997 6999999864 1111 11222222234555542
Q ss_pred c---CCccccccCCCCEEEEcC
Q 018314 86 G---NDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 86 ~---~~d~~~al~~aDiVIi~a 104 (358)
. .++..+-++++|+||-+.
T Consensus 409 ~~I~~en~~~fl~~~DiVVDa~ 430 (989)
T PRK14852 409 EGVAAETIDAFLKDVDLLVDGI 430 (989)
T ss_pred cCCCHHHHHHHhhCCCEEEECC
Confidence 1 234445678999999753
No 485
>PRK06436 glycerate dehydrogenase; Provisional
Probab=94.11 E-value=0.19 Score=48.47 Aligned_cols=95 Identities=19% Similarity=0.341 Sum_probs=60.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
.-..++|+|+|- |.||+.++..+..-+. +|+.||..... + .. . ..+ .++++.++.||+|++..
T Consensus 119 ~L~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~-------~-~~--~-~~~---~~l~ell~~aDiv~~~l 181 (303)
T PRK06436 119 LLYNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN-------D-GI--S-SIY---MEPEDIMKKSDFVLISL 181 (303)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc-------c-Cc--c-ccc---CCHHHHHhhCCEEEECC
Confidence 345679999997 9999999987765565 99999975311 0 10 1 011 34678899999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee--CCCC
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN 149 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t--NP~d 149 (358)
-. .+ .+..++. .+.++...|++++|+++ .++|
T Consensus 182 p~--t~---------~T~~li~--~~~l~~mk~ga~lIN~sRG~~vd 215 (303)
T PRK06436 182 PL--TD---------ETRGMIN--SKMLSLFRKGLAIINVARADVVD 215 (303)
T ss_pred CC--Cc---------hhhcCcC--HHHHhcCCCCeEEEECCCccccC
Confidence 21 11 1111221 33445556788888874 4454
No 486
>PLN02494 adenosylhomocysteinase
Probab=94.09 E-value=0.21 Score=50.88 Aligned_cols=94 Identities=23% Similarity=0.275 Sum_probs=62.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
...+|+|+|. |.+|..++..+...+. +|+.+|+++.. ..+.+.. . .+ . ++.++++++|+||.+.|
T Consensus 253 aGKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~~G--~---~v--v----~leEal~~ADVVI~tTG 318 (477)
T PLN02494 253 AGKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALMEG--Y---QV--L----TLEDVVSEADIFVTTTG 318 (477)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHhcC--C---ee--c----cHHHHHhhCCEEEECCC
Confidence 4568999998 9999999999987775 89999987622 2322111 1 11 1 23567899999998765
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcc
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST 151 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~ 151 (358)
.. .++. ...+....+++++++++-+.+.+
T Consensus 319 t~---------------~vI~--~e~L~~MK~GAiLiNvGr~~~eI 347 (477)
T PLN02494 319 NK---------------DIIM--VDHMRKMKNNAIVCNIGHFDNEI 347 (477)
T ss_pred Cc---------------cchH--HHHHhcCCCCCEEEEcCCCCCcc
Confidence 32 1110 24455566889999998875443
No 487
>PLN02306 hydroxypyruvate reductase
Probab=94.04 E-value=0.33 Score=48.49 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=60.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHH---HHhhc----CCC-CccEEEEecCCccccccCC
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA---ADVGH----INT-RSEVAGYMGNDQLGQALED 96 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~---~dl~~----~~~-~~~v~~~~~~~d~~~al~~ 96 (358)
+-..++|+|||. |.+|+.+|..+.. ++..+|.-||........ ..+.. ... ...++. ..++++.++.
T Consensus 162 ~L~gktvGIiG~-G~IG~~vA~~l~~-~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~L~ell~~ 236 (386)
T PLN02306 162 LLKGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKR---ASSMEEVLRE 236 (386)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHh-cCCCEEEEECCCCchhhhhhhhhhcccccccccccccccc---cCCHHHHHhh
Confidence 445679999997 9999999988742 333489999976421111 01110 000 011111 2467889999
Q ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314 97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146 (358)
Q Consensus 97 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN 146 (358)
||+|++.. |..+ .|-.++.. +.++...|++++|+++=
T Consensus 237 sDiV~lh~--Plt~---------~T~~lin~--~~l~~MK~ga~lIN~aR 273 (386)
T PLN02306 237 ADVISLHP--VLDK---------TTYHLINK--ERLALMKKEAVLVNASR 273 (386)
T ss_pred CCEEEEeC--CCCh---------hhhhhcCH--HHHHhCCCCeEEEECCC
Confidence 99999964 2211 22222211 34555568899988763
No 488
>PRK13529 malate dehydrogenase; Provisional
Probab=94.04 E-value=0.57 Score=48.68 Aligned_cols=126 Identities=21% Similarity=0.345 Sum_probs=79.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHh----CCCC-----cEEEEEecCC--c------HHHHHHhhcCCCCccEEEE---ec
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKL----NPLV-----SRLALYDIAN--T------PGVAADVGHINTRSEVAGY---MG 86 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~----~~~~-----~ei~L~D~~~--~------~~~~~dl~~~~~~~~v~~~---~~ 86 (358)
+..||.|.|| |..|..++.+|.. .|.- ..|+++|... . ......+.+.. ..+... ..
T Consensus 294 ~d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~--~~~~~~~~~~~ 370 (563)
T PRK13529 294 SDQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKR--EELADWDTEGD 370 (563)
T ss_pred hhcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhc--ccccccccccC
Confidence 4459999998 9999999887765 4542 5899999864 1 11111222211 111100 01
Q ss_pred CCccccccCCC--CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHh
Q 018314 87 NDQLGQALEDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKA 162 (358)
Q Consensus 87 ~~d~~~al~~a--DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~s 162 (358)
..++.++++++ |+.|=+.+.+ | -+-+++.+.|.+++++.+|+-.|||.. -.++ .++++.+
T Consensus 371 ~~~L~e~v~~~kPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tp--e~a~~~T 434 (563)
T PRK13529 371 VISLLEVVRNVKPTVLIGVSGQP---G-----------AFTEEIVKEMAAHCERPIIFPLSNPTSRAEATP--EDLIAWT 434 (563)
T ss_pred CCCHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCCCcccCH--HHHHHhh
Confidence 24688999999 9988766543 2 134677888888999999998999986 3333 2335543
Q ss_pred CCCCCCceEeec
Q 018314 163 GTYNEKKLFGVT 174 (358)
Q Consensus 163 g~~~~~kviG~t 174 (358)
. -+-+|+.+
T Consensus 435 ~---Grai~AtG 443 (563)
T PRK13529 435 D---GRALVATG 443 (563)
T ss_pred c---CCEEEEEC
Confidence 1 25677773
No 489
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=94.02 E-value=0.61 Score=42.47 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=61.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec-CCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------c
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L 94 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~-~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l 94 (358)
+.+.|+||+|.+|..++..|+..+. ++++... +.. .....++.... .++.... +-.| +.++ +
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGCGPNSPRRVKWLEDQKALG--FDFIASEGNVGDWDSTKAAFDKVKAEV 79 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999886 6777543 221 12222332211 1222111 1112 1122 2
Q ss_pred CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314 95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 95 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
...|+||.++|..... ..+ -...+..|..- .+.+.+.+.+. +.+.+++++..
T Consensus 80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS~ 141 (246)
T PRK12938 80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVER-GWGRIINISSV 141 (246)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEEech
Confidence 4689999999875321 112 22334555444 44455555443 23456666543
No 490
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=94.02 E-value=0.22 Score=48.54 Aligned_cols=97 Identities=18% Similarity=0.137 Sum_probs=59.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+-..++|+|||. |.+|..++..+. .++..+|+.||.........++ .++. .++.+.++.||+|++..
T Consensus 142 ~L~gktvGIiG~-G~IG~~va~~l~-~~fgm~V~~~~~~~~~~~~~~~-------~~~~----~~l~ell~~sDvv~lh~ 208 (323)
T PRK15409 142 DVHHKTLGIVGM-GRIGMALAQRAH-FGFNMPILYNARRHHKEAEERF-------NARY----CDLDTLLQESDFVCIIL 208 (323)
T ss_pred CCCCCEEEEEcc-cHHHHHHHHHHH-hcCCCEEEEECCCCchhhHHhc-------CcEe----cCHHHHHHhCCEEEEeC
Confidence 446679999997 999999998875 3444488888865321111111 1221 24678899999999975
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314 105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147 (358)
Q Consensus 105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP 147 (358)
- ..+ .|..++- .+.++...|++++||++-=
T Consensus 209 p--lt~---------~T~~li~--~~~l~~mk~ga~lIN~aRG 238 (323)
T PRK15409 209 P--LTD---------ETHHLFG--AEQFAKMKSSAIFINAGRG 238 (323)
T ss_pred C--CCh---------HHhhccC--HHHHhcCCCCeEEEECCCc
Confidence 2 111 1222221 1234445689998887544
No 491
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.99 E-value=0.37 Score=48.72 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=60.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH-HHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
...+|+|+|+ |.+|..++..+...+. +|+.+|+++... .+.. + .. .+ .++.++++++|+||.+.|
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~~--~-G~--~v------~~l~eal~~aDVVI~aTG 276 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAAM--D-GF--RV------MTMEEAAELGDIFVTATG 276 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHHh--c-CC--Ee------cCHHHHHhCCCEEEECCC
Confidence 4668999998 9999999999988776 899999886322 1111 1 11 11 123577899999998764
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d 149 (358)
. ..++. ...++...+.+++++++-+.+
T Consensus 277 ~---------------~~vI~--~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 277 N---------------KDVIT--AEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred C---------------HHHHH--HHHHhcCCCCCEEEEcCCCCC
Confidence 2 11221 123444557788888876654
No 492
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.99 E-value=0.14 Score=49.03 Aligned_cols=58 Identities=21% Similarity=0.444 Sum_probs=44.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
-..++|+|||+++.||..++..|...+. ++..++.+. .++.+.+++||+||.+.|
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~t-----------------------~~l~~~~~~ADIVIsAvg 210 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSRS-----------------------KDMASYLKDADVIVSAVG 210 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCCc-----------------------hhHHHHHhhCCEEEECCC
Confidence 4567999999844499999999987764 676666321 245677899999999998
Q ss_pred CCC
Q 018314 106 VPR 108 (358)
Q Consensus 106 ~~~ 108 (358)
.|.
T Consensus 211 ~p~ 213 (286)
T PRK14175 211 KPG 213 (286)
T ss_pred CCc
Confidence 763
No 493
>PRK06123 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.81 Score=41.65 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=61.7
Q ss_pred eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCC---cccccc-------C
Q 018314 30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GND---QLGQAL-------E 95 (358)
Q Consensus 30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al-------~ 95 (358)
.+.|+||+|.+|+.++..|+..+. .+++.+.+. ......++.... .++..+. +-+ ++.+++ .
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGY--AVCLNYLRNRDAAEAVVQAIRRQG--GEALAVAADVADEADVLRLFEAVDRELG 79 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC--eEEEecCCCHHHHHHHHHHHHhCC--CcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence 589999999999999999998886 677777543 112222232211 1122111 111 122222 3
Q ss_pred CCCEEEEcCCCCCCC----CCCH---HHHHHHHHHHH----HHHHHHHHhhC--CCeEEEEeeCCC
Q 018314 96 DSDVVIIPAGVPRKP----GMTR---DDLFNINAGIV----KDLCSAIAKYC--PNAIVNMISNPV 148 (358)
Q Consensus 96 ~aDiVIi~ag~~~~~----g~~r---~~~~~~N~~i~----~~i~~~i~~~~--p~a~iiv~tNP~ 148 (358)
..|+||.++|..... ..+. ...+..|+... +.+.+.+.+.. .++.+++++...
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~ 145 (248)
T PRK06123 80 RLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMA 145 (248)
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchh
Confidence 679999999864321 1222 23355555543 44444443321 245666666654
No 494
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=93.97 E-value=0.12 Score=50.83 Aligned_cols=34 Identities=32% Similarity=0.373 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEe
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D 61 (358)
|+||+|+||+|.+|..++..|...+...-+.+.|
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~ 35 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS 35 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence 4799999999999999998888776443345566
No 495
>PRK07775 short chain dehydrogenase; Provisional
Probab=93.95 E-value=1.1 Score=41.96 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=30.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
++.+.|+||+|.+|..++..|+..+. +|++.+.+.
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~ 44 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGF--PVALGARRV 44 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 34799999999999999999998886 888888754
No 496
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.94 E-value=2.4 Score=39.61 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=28.9
Q ss_pred CceEEEEcCCC--ChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314 28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN 64 (358)
Q Consensus 28 ~~KI~IiGA~G--~vG~~~a~~l~~~~~~~ei~L~D~~~ 64 (358)
.+.+.|+||++ .+|..++..|+..+. .|++.|.+.
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~ 42 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQND 42 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecch
Confidence 34788999854 799999999999886 788988753
No 497
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=93.92 E-value=0.3 Score=51.09 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=52.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc----H--HHHHHhhcC-CCCccEEEEe--cCCccccccCCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----P--GVAADVGHI-NTRSEVAGYM--GNDQLGQALEDS 97 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~--~~~~dl~~~-~~~~~v~~~~--~~~d~~~al~~a 97 (358)
+..||+|+|. |.+|+++...|+..|+ .+|+.+|.+.. . ++..++.+. ....+++... ...|+.+.+++.
T Consensus 128 R~akVlVlG~-Gg~~s~lv~sL~~sG~-~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~ 205 (637)
T TIGR03693 128 RNAKILAAGS-GDFLTKLVRSLIDSGF-PRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPA 205 (637)
T ss_pred hcccEEEEec-CchHHHHHHHHHhcCC-CcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCC
Confidence 5679999997 9999999999999985 37888877651 1 122222221 2222333322 346788899999
Q ss_pred CEEEEcCC
Q 018314 98 DVVIIPAG 105 (358)
Q Consensus 98 DiVIi~ag 105 (358)
|+||.++.
T Consensus 206 DiVi~vsD 213 (637)
T TIGR03693 206 DWVLYVSD 213 (637)
T ss_pred cEEEEECC
Confidence 99999875
No 498
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.90 E-value=0.19 Score=42.99 Aligned_cols=58 Identities=29% Similarity=0.457 Sum_probs=44.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314 25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA 104 (358)
Q Consensus 25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a 104 (358)
+-+.++|+|+|.+..+|..++..|...+. ++.++|.+. .|+++++++||+||.+.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~t-----------------------~~l~~~v~~ADIVvsAt 79 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWKT-----------------------IQLQSKVHDADVVVVGS 79 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCCC-----------------------cCHHHHHhhCCEEEEec
Confidence 34567999999988999999999987765 676666431 23456789999999988
Q ss_pred CCC
Q 018314 105 GVP 107 (358)
Q Consensus 105 g~~ 107 (358)
|.+
T Consensus 80 g~~ 82 (140)
T cd05212 80 PKP 82 (140)
T ss_pred CCC
Confidence 765
No 499
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.90 E-value=0.33 Score=49.53 Aligned_cols=123 Identities=15% Similarity=0.241 Sum_probs=73.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314 27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG 105 (358)
Q Consensus 27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag 105 (358)
+..||.|+|. |.-|.+.+..|. .+. +++++|.+.. .....++.+ ..... ..+ .+.+.++|+||.+.|
T Consensus 5 ~~~~v~v~G~-G~sG~a~~~~L~-~g~--~v~v~D~~~~~~~~~~~~~~----~~~~~---~~~-~~~~~~~d~vV~SPg 72 (454)
T PRK01368 5 TKQKIGVFGL-GKTGISVYEELQ-NKY--DVIVYDDLKANRDIFEELYS----KNAIA---ALS-DSRWQNLDKIVLSPG 72 (454)
T ss_pred CCCEEEEEee-cHHHHHHHHHHh-CCC--EEEEECCCCCchHHHHhhhc----Cceec---cCC-hhHhhCCCEEEECCC
Confidence 3569999997 999999998888 454 8999995432 111122211 11111 111 245778999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314 106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG 163 (358)
Q Consensus 106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg 163 (358)
+|...- ........+++++.++--.. +..++..+|-+|=..+ .+|.+++++++..|
T Consensus 73 I~~~~p-~~~~a~~~gi~v~~e~el~~-~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g 130 (454)
T PRK01368 73 IPLTHE-IVKIAKNFNIPITSDIDLLF-EKSKNLKFIAITGTNGKSTTTALISHILNSNG 130 (454)
T ss_pred CCCCCH-HHHHHHHCCCceecHHHHHH-HHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence 875321 12223356777765432221 2222323455554444 78888888888877
No 500
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=93.89 E-value=0.2 Score=47.79 Aligned_cols=145 Identities=23% Similarity=0.237 Sum_probs=85.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC--CCCEEEEcCCC
Q 018314 29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV 106 (358)
Q Consensus 29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVIi~ag~ 106 (358)
|||.|+|++|++|+.+...+. .+. +++-.|..+ +|+.+.. .+.+.++ .-|+||.+|..
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy 60 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY 60 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence 579999999999999988877 333 676666543 3333322 1123333 45899999986
Q ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee-CCC--Ccc-hHHHHHHHHHhCCCCCCceEeeccccHHH
Q 018314 107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPV--NST-VPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180 (358)
Q Consensus 107 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t-NP~--d~~-t~~~~~~~~~sg~~~~~kviG~t~lds~R 180 (358)
..-. ..++..-+.-|..-...+++..++.+ +++|-+| --+ +.- .. ++++..-.|..++|-+.+-..
T Consensus 61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiSTDyVFDG~~~~~-----Y~E~D~~~P~nvYG~sKl~GE- 132 (281)
T COG1091 61 TAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHISTDYVFDGEKGGP-----YKETDTPNPLNVYGRSKLAGE- 132 (281)
T ss_pred cccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEeecceEecCCCCCC-----CCCCCCCCChhhhhHHHHHHH-
Confidence 5432 34567778899999999999999885 4444333 111 100 00 122221235667777643322
Q ss_pred HHHHHHHHcCCCCCCC---ceEEEeecCC
Q 018314 181 AKTFYAGKANVNVAEV---NVPVVGGHAG 206 (358)
Q Consensus 181 ~~~~la~~l~v~~~~v---~~~v~G~hg~ 206 (358)
...+..+ ++.+ ..|++|++|.
T Consensus 133 ---~~v~~~~--~~~~I~Rtswv~g~~g~ 156 (281)
T COG1091 133 ---EAVRAAG--PRHLILRTSWVYGEYGN 156 (281)
T ss_pred ---HHHHHhC--CCEEEEEeeeeecCCCC
Confidence 2222222 3332 4789999986
Done!