BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018315
         (358 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C0Z6Q2|HPRK_BREBN HPr kinase/phosphorylase OS=Brevibacillus brevis (strain 47 / JCM
           6285 / NBRC 100599) GN=hprK PE=3 SV=1
          Length = 311

 Score = 32.0 bits (71), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 81  QLHAAITVAGVAAAVAAIAAATAASSGSGKDEHMAKTDMAVASAATLVAAQCVETAEAMG 140
           +L    T+ GV   +  +      SSG GK E   +    V     LVA   VE  +  G
Sbjct: 130 RLAPTTTIHGVLTDIYGVGVLIMGSSGIGKSEAALE---LVKRGHRLVADDAVEIKQTQG 186

Query: 141 AEREHLAA-VVSSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVW 188
            +    A  ++   + +R  G I  +T   A A+R    ++     E+W
Sbjct: 187 GQLSGSAPELIQHLLEIRGVGIINIMTMFGAGAVRNVKNIEMVVQLELW 235


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.128    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,983,397
Number of Sequences: 539616
Number of extensions: 5500108
Number of successful extensions: 63232
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 177
Number of HSP's that attempted gapping in prelim test: 60868
Number of HSP's gapped (non-prelim): 2061
length of query: 358
length of database: 191,569,459
effective HSP length: 119
effective length of query: 239
effective length of database: 127,355,155
effective search space: 30437882045
effective search space used: 30437882045
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)