Query 018315
Match_columns 358
No_of_seqs 84 out of 86
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 07:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05703 Auxin_canalis: Auxin 100.0 3.7E-63 8E-68 461.7 13.6 144 56-199 99-242 (242)
2 PF08458 PH_2: Plant pleckstri 100.0 1.4E-54 3.1E-59 364.8 12.3 110 243-353 1-110 (110)
3 PF12814 Mcp5_PH: Meiotic cell 97.2 0.0048 1E-07 52.3 10.7 105 236-347 6-122 (123)
4 smart00233 PH Pleckstrin homol 96.6 0.019 4.2E-07 41.5 8.4 99 241-346 3-101 (102)
5 PF00169 PH: PH domain; Inter 96.1 0.11 2.4E-06 38.7 9.9 95 241-346 3-103 (104)
6 cd00821 PH Pleckstrin homology 94.8 0.25 5.3E-06 35.4 7.9 34 311-344 62-95 (96)
7 cd01250 PH_centaurin Centaurin 94.3 0.43 9.4E-06 36.3 8.6 92 241-344 1-93 (94)
8 cd01219 PH_FGD FGD (faciogenit 92.2 1.4 3E-05 35.9 8.9 94 241-346 4-99 (101)
9 cd01220 PH_CDEP Chondrocyte-de 90.7 2.3 5E-05 35.2 8.8 94 241-346 4-97 (99)
10 cd00900 PH-like Pleckstrin hom 89.9 4.8 0.0001 28.9 9.0 34 311-344 63-98 (99)
11 cd01249 PH_oligophrenin Oligop 87.4 5.2 0.00011 34.4 8.8 94 241-343 1-102 (104)
12 cd01235 PH_SETbf Set binding f 86.9 7.8 0.00017 30.3 9.1 35 310-345 66-100 (101)
13 cd01248 PH_PLC Phospholipase C 86.8 6 0.00013 32.7 8.7 101 236-345 3-115 (115)
14 cd01254 PH_PLD Phospholipase D 85.3 1.4 3E-05 37.3 4.3 34 310-344 87-120 (121)
15 cd01261 PH_SOS Son of Sevenles 85.3 7.5 0.00016 33.4 8.8 95 241-346 6-109 (112)
16 cd01265 PH_PARIS-1 PARIS-1 ple 84.4 8.7 0.00019 31.0 8.4 33 312-345 61-93 (95)
17 cd01233 Unc104 Unc-104 pleckst 84.0 9 0.0002 31.0 8.4 92 241-345 4-97 (100)
18 cd01251 PH_centaurin_alpha Cen 80.9 16 0.00036 29.9 8.9 33 314-347 69-101 (103)
19 cd01246 PH_oxysterol_bp Oxyste 79.0 22 0.00047 26.7 8.5 88 243-344 3-90 (91)
20 cd01260 PH_CNK Connector enhan 76.8 25 0.00053 27.7 8.5 33 311-343 62-94 (96)
21 PLN02958 diacylglycerol kinase 74.8 7.1 0.00015 40.5 6.2 84 245-348 23-107 (481)
22 cd01247 PH_GPBP Goodpasture an 72.9 6 0.00013 32.0 4.1 34 311-344 57-90 (91)
23 cd01230 PH_EFA6 EFA6 Pleckstri 72.4 26 0.00057 30.1 8.1 37 310-346 75-111 (117)
24 cd01252 PH_cytohesin Cytohesin 68.9 67 0.0014 26.8 9.7 25 323-347 90-114 (125)
25 cd01238 PH_Tec Tec pleckstrin 68.3 58 0.0013 26.8 9.1 33 311-344 73-105 (106)
26 cd01222 PH_clg Clg (common-sit 67.1 11 0.00024 31.5 4.6 36 311-346 58-95 (97)
27 PTZ00283 serine/threonine prot 66.2 18 0.00039 36.8 6.8 105 242-348 376-491 (496)
28 PF15410 PH_9: Pleckstrin homo 65.8 17 0.00037 30.5 5.6 92 247-344 17-116 (119)
29 cd01264 PH_melted Melted pleck 63.4 14 0.00031 31.2 4.7 32 312-344 68-99 (101)
30 cd01257 PH_IRS Insulin recepto 62.1 12 0.00026 31.3 4.0 34 311-345 68-101 (101)
31 cd01218 PH_phafin2 Phafin2 Pl 58.2 1.2E+02 0.0025 25.8 9.5 35 312-347 65-99 (104)
32 cd01253 PH_beta_spectrin Beta- 58.1 85 0.0018 25.0 8.1 34 311-344 70-103 (104)
33 PF15413 PH_11: Pleckstrin hom 52.7 21 0.00046 29.8 3.9 34 310-344 78-111 (112)
34 cd01232 PH_TRIO Trio pleckstri 51.3 1.5E+02 0.0033 25.5 9.0 37 311-347 73-113 (114)
35 cd01244 PH_RasGAP_CG9209 RAS_G 51.2 1.4E+02 0.0031 24.8 8.7 31 313-344 67-97 (98)
36 cd01245 PH_RasGAP_CG5898 RAS G 48.7 1.4E+02 0.0031 25.0 8.2 89 243-344 3-97 (98)
37 cd01266 PH_Gab Gab (Grb2-assoc 47.1 28 0.00062 28.4 3.8 31 314-345 77-107 (108)
38 cd01224 PH_Collybistin Collybi 46.3 1.7E+02 0.0037 25.5 8.5 94 242-343 5-104 (109)
39 PTZ00267 NIMA-related protein 45.1 74 0.0016 32.0 7.1 96 240-346 378-476 (478)
40 cd01236 PH_outspread Outspread 40.1 49 0.0011 27.9 4.3 32 311-343 70-101 (104)
41 PF15409 PH_8: Pleckstrin homo 35.1 63 0.0014 27.0 4.1 34 310-344 54-87 (89)
42 cd01221 PH_ephexin Ephexin Ple 32.9 2.3E+02 0.005 25.1 7.4 19 325-343 101-119 (125)
43 cd01227 PH_Dbs Dbs (DBL's big 31.7 88 0.0019 27.8 4.7 39 311-349 79-119 (133)
44 KOG4424 Predicted Rho/Rac guan 31.1 1.8E+02 0.0039 32.2 7.6 103 238-353 271-376 (623)
45 TIGR02433 lysidine_TilS_C tRNA 27.7 32 0.0007 24.1 1.1 22 48-69 11-32 (47)
46 PF06212 GRIM-19: GRIM-19 prot 27.4 32 0.00069 30.5 1.2 15 24-40 10-24 (130)
47 PF08772 NOB1_Zn_bind: Nin one 24.9 36 0.00078 27.6 1.0 36 241-276 20-55 (73)
48 PF08599 Nbs1_C: DNA damage re 23.8 86 0.0019 25.4 2.9 40 39-78 6-56 (65)
49 cd01226 PH_exo84 Exocyst compl 23.2 4.8E+02 0.01 22.4 8.7 32 312-344 65-96 (100)
50 cd01237 Unc112 Unc-112 pleckst 22.1 79 0.0017 27.4 2.6 20 323-342 80-99 (106)
51 PF05589 DUF768: Protein of un 21.4 1.3E+02 0.0027 24.1 3.4 31 123-154 27-57 (64)
No 1
>PF05703 Auxin_canalis: Auxin canalisation; InterPro: IPR008546 This domain consists of several plant proteins of unknown function.
Probab=100.00 E-value=3.7e-63 Score=461.74 Aligned_cols=144 Identities=77% Similarity=0.984 Sum_probs=141.3
Q ss_pred CCcchhhhhhhhHHHhHHHHhhhhhhhhhHHhHHHHHHHHHHHHHhhhccCCCCCccchhhhhHHHHhHHHHHHHHHHHH
Q 018315 56 GGKTVGRWLKDRREKKKEEARVHNAQLHAAITVAGVAAAVAAIAAATAASSGSGKDEHMAKTDMAVASAATLVAAQCVET 135 (358)
Q Consensus 56 ~~~tvgrWlk~~k~KKKEe~R~~nAqvHAAVSVAgVAAAvAAvaAata~ss~~~~d~~~ak~~~AvASAAaLvAaqCvE~ 135 (358)
+++||||||||+|+|||||+|+||||||||||||+||||||||+++++.+++++.+++++||+|||||||+|||+||||+
T Consensus 99 ~~~~i~~w~~~~~~kkkee~R~~~A~vhaAvSVA~vAaavAavaa~~~~~~~~~~~~~~~k~~~avASAa~LvAa~C~e~ 178 (242)
T PF05703_consen 99 GGKTIGRWLKDRKEKKKEEARAHNAQVHAAVSVAGVAAAVAAVAAATAASSSSGKDESSSKMDAAVASAAALVAAQCAEA 178 (242)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHHcCCCchhHHHhhhhhhccccCCchhhhhhHHHhccchhHHHHHHhhhhhhhcceecccccc
Q 018315 136 AEAMGAEREHLAAVVSSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVEKG 199 (358)
Q Consensus 136 AE~~GA~rd~vasaV~SAV~vrs~gDimTLTAaAATALRGAAtLKaR~~ke~~n~Aav~P~ek~ 199 (358)
||+|||+||||+++|+||||+|||||||||||+|||||||+||||+|++||+|++|+||||||+
T Consensus 179 Ae~~GA~~~~v~s~v~sav~~~s~gdi~TLTAaAATaLRGaa~Lk~R~~ke~~~~a~v~P~e~~ 242 (242)
T PF05703_consen 179 AEAAGADRDQVASAVRSAVNVRSPGDIMTLTAAAATALRGAATLKARAQKEARSNAAVLPYEKG 242 (242)
T ss_pred HHHhCCcHHHHHHHHHHHhcCCCchHHHHHHHHHHhcCchHHHHHHHHhhhhhcccccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999985
No 2
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=100.00 E-value=1.4e-54 Score=364.75 Aligned_cols=110 Identities=67% Similarity=1.136 Sum_probs=107.9
Q ss_pred ceeeeecCCCceeEEEEEEEEcCccEEEEEeeccccccccccccceEEEeeccCCCCCCCcccccCCCcceeEEEeeccc
Q 018315 243 CELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTVLR 322 (358)
Q Consensus 243 ~eLlkrtrkG~lhwk~VSVyink~~qV~LKmKSkHv~GAfsKKKK~VV~dV~~~ipAWpgr~l~e~~e~r~YFglkTa~~ 322 (358)
||||||||||+||||+||||||+++|||||||||||+|||||||||||+|||+|+||||||++.|++|+++||||+|++
T Consensus 1 ~eLlk~tr~G~l~~k~Vsvyink~~qVilKmKskhv~Gafskkkk~VV~~V~~~~~awpgr~~~e~~~~~~yfgL~T~~- 79 (110)
T PF08458_consen 1 GELLKRTRKGDLHWKTVSVYINKKGQVILKMKSKHVGGAFSKKKKSVVLDVCSEIPAWPGRELREDGEERRYFGLKTAQ- 79 (110)
T ss_pred CcceEecCCCceEEEEEEEEECCCcEEEEEeecchhhhhhhcCCceEEEEEccCcccCCCcccccCCceEEEEEEEecC-
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ceEEEEeCCchhHhhHHHHHHHHHHHHHHhh
Q 018315 323 GVVEFECRSQREYDIWTQGVARLLNVAAERS 353 (358)
Q Consensus 323 GvvEFec~s~~~~q~W~~gI~~lL~~~~~~~ 353 (358)
|+|||||+||+|||+|++||++||+++++|+
T Consensus 80 G~vEfec~~~~~~k~W~~gI~~mL~~~~~~~ 110 (110)
T PF08458_consen 80 GVVEFECDSQREYKRWVQGIQHMLSQVAEKK 110 (110)
T ss_pred cEEEEEeCChhhHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999875
No 3
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.21 E-value=0.0048 Score=52.29 Aligned_cols=105 Identities=25% Similarity=0.253 Sum_probs=65.0
Q ss_pred hhHhhhcceeeeecCCC------ceeEEEEEEEEcCccEEEEEeecc--ccccccccccceE----EEeeccCCCCCCCc
Q 018315 236 RELLARGCELLKRTRKG------DLHWKIVSVYINRLNQVMLKMKSR--HVAGTITKKKKNV----VLEVIPDMPAWPGR 303 (358)
Q Consensus 236 ~~~larG~eLlkrtrkG------~lhwk~VSVyink~~qV~LKmKSk--Hv~GAfsKKKK~V----V~dV~~~ipAWpgr 303 (358)
.+.+..|..|+|.+|+| .-|.|-+=|=++. .. |+=.+. -.......+.++| |..|.++-|-=++.
T Consensus 6 i~~~~~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~-~~--L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~ 82 (123)
T PF12814_consen 6 ITQLMIGEWLYKYTRKGRSGISEKPHRRYFWVDPYT-RT--LYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGL 82 (123)
T ss_pred HHHhhcccEEEEEcccccCccCCCcEEEEEEEeCCC-CE--EEecCCCCCccccccccccceEEeeeEEecCCCCCCccc
Confidence 45678999999999999 6666655444432 22 222222 1222233333333 34444443322222
Q ss_pred ccccCCCcceeEEEeecccceEEEEeCCchhHhhHHHHHHHHHH
Q 018315 304 HLLEGGEDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLN 347 (358)
Q Consensus 304 ~l~e~~e~r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~lL~ 347 (358)
...+...-|.|.|.. +.|.|.|.+..++++|.++++.||.
T Consensus 83 ---~~~~~~~si~i~t~~-R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 83 ---KKPDHNKSIIIVTPD-RSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred ---cccccceEEEEEcCC-eEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 111245556778887 8999999999999999999999984
No 4
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=96.63 E-value=0.019 Score=41.48 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=61.0
Q ss_pred hcceeeeecCCCceeEEEEEEEEcCccEEEEEeeccccccccccccceEEEeeccCCCCCCCcccccCCCcceeEEEeec
Q 018315 241 RGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTV 320 (358)
Q Consensus 241 rG~eLlkrtrkG~lhwk~VSVyink~~qV~LKmKSkHv~GAfsKKKK~VV~dV~~~ipAWpgr~l~e~~e~r~YFglkTa 320 (358)
+.|.|+++.+.+...|+.+-+.+.. .++.--+.++-..-.......-+.++.-... +. .+......+|-|.+.
T Consensus 3 ~~G~l~~~~~~~~~~~~~~~~~L~~--~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~--~~---~~~~~~~~~f~l~~~ 75 (102)
T smart00233 3 KEGWLYKKSGGKKKSWKKRYFVLFN--STLLYYKSEKAKKDYKPKGSIDLSGITVREA--PD---PDSAKKPHCFEIKTA 75 (102)
T ss_pred eeEEEEEeCCCccCCceEEEEEEEC--CEEEEEeCCCccccCCCceEEECCcCEEEeC--CC---CccCCCceEEEEEec
Confidence 5678888887677789998888865 3333355554321122222222222211100 00 000235789999988
Q ss_pred ccceEEEEeCCchhHhhHHHHHHHHH
Q 018315 321 LRGVVEFECRSQREYDIWTQGVARLL 346 (358)
Q Consensus 321 ~~GvvEFec~s~~~~q~W~~gI~~lL 346 (358)
++-.+.|.|.+..+.+.|.+.|+..+
T Consensus 76 ~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 76 DRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 83399999999999999999998764
No 5
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=96.05 E-value=0.11 Score=38.70 Aligned_cols=95 Identities=19% Similarity=0.263 Sum_probs=62.4
Q ss_pred hcceeeeecCCCceeEEEEEEEEcCccEEEEEeeccc------cccccccccceEEEeeccCCCCCCCcccccCCCccee
Q 018315 241 RGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRH------VAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRY 314 (358)
Q Consensus 241 rG~eLlkrtrkG~lhwk~VSVyink~~qV~LKmKSkH------v~GAfsKKKK~VV~dV~~~ipAWpgr~l~e~~e~r~Y 314 (358)
+.|.|++++ .+.-.|+..-+.+.. ++++ =-++.. .-+.|.-..= .|....+.. .....+...+
T Consensus 3 ~~G~L~~~~-~~~~~wk~r~~vL~~-~~L~-~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~-------~~~~~~~~~~ 71 (104)
T PF00169_consen 3 KEGWLLKKS-SSRKKWKKRYFVLRD-SYLL-YYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSD-------FLSNKKRKNC 71 (104)
T ss_dssp EEEEEEEEE-SSSSSEEEEEEEEET-TEEE-EESSTTTTTESSESEEEEGTTE-EEEEETSST-------STSTSSSSSE
T ss_pred EEEEEEEEC-CCCCCeEEEEEEEEC-CEEE-EEecCccccceeeeEEEEecCc-eEEEcCccc-------cccccCCCcE
Confidence 568889988 677889998888854 3433 333332 1222222222 222222221 0134467899
Q ss_pred EEEeecccceEEEEeCCchhHhhHHHHHHHHH
Q 018315 315 FGLKTVLRGVVEFECRSQREYDIWTQGVARLL 346 (358)
Q Consensus 315 FglkTa~~GvvEFec~s~~~~q~W~~gI~~lL 346 (358)
|-|.+.++..+.|.|+|..+.+.|.+.|+..+
T Consensus 72 f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 72 FEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 99999994499999999999999999999865
No 6
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.82 E-value=0.25 Score=35.43 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=30.7
Q ss_pred cceeEEEeecccceEEEEeCCchhHhhHHHHHHH
Q 018315 311 DRRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 311 ~r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~ 344 (358)
...+|-|.+.+...+.|.|+|..+.+.|.+.|+.
T Consensus 62 ~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 62 RKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 5789999988878899999999999999999874
No 7
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.34 E-value=0.43 Score=36.26 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=57.9
Q ss_pred hcceeeeecCCCceeEEEEEEEEcCccEEEEEeeccccccccccccceEEEe-eccCCCCCCCcccccCCCcceeEEEee
Q 018315 241 RGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLE-VIPDMPAWPGRHLLEGGEDRRYFGLKT 319 (358)
Q Consensus 241 rG~eLlkrtrkG~lhwk~VSVyink~~qV~LKmKSkHv~GAfsKKKK~VV~d-V~~~ipAWpgr~l~e~~e~r~YFglkT 319 (358)
+.|-|+|+++++.-.|+..=+.+. .+.+++-...... .......|-+. +..+. ..+..+....|-|.|
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~-~~~l~~y~~~~~~---~~~~~~~i~l~~~~v~~-------~~~~~~~~~~f~i~~ 69 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLK-NGQLTYHHRLKDY---DNAHVKEIDLRRCTVRH-------NGKQPDRRFCFEVIS 69 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEe-CCeEEEEcCCccc---ccccceEEeccceEEec-------CccccCCceEEEEEc
Confidence 467899999887667988877775 5666654333221 01111112211 11110 111113577999999
Q ss_pred cccceEEEEeCCchhHhhHHHHHHH
Q 018315 320 VLRGVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 320 a~~GvvEFec~s~~~~q~W~~gI~~ 344 (358)
.+ ..+.|..+|..+.+.|+..|+.
T Consensus 70 ~~-~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 70 PT-KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred CC-cEEEEECCCHHHHHHHHHHHhc
Confidence 88 8999999999999999999864
No 8
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.16 E-value=1.4 Score=35.91 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=53.9
Q ss_pred hcceeeeecCCCceeEEEEEEEEcCccEEEEEeecccc-cc-ccccccceEEEeeccCCCCCCCcccccCCCcceeEEEe
Q 018315 241 RGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHV-AG-TITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLK 318 (358)
Q Consensus 241 rG~eLlkrtrkG~lhwk~VSVyink~~qV~LKmKSkHv-~G-AfsKKKK~VV~dV~~~ipAWpgr~l~e~~e~r~YFglk 318 (358)
+.|.|+|..++.. .|+.--+|+=.+ ++|==+.+.. +| -|..+..--|.++.-..+ ++.+...-|-|.
T Consensus 4 keG~L~K~~~~~~-~~k~RyffLFnd--~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~--------~~~~~~~~F~I~ 72 (101)
T cd01219 4 KEGSVLKISSTTE-KTEERYLFLFND--LLLYCVPRKMIGGSKFKVRARIDVSGMQVCEG--------DNLERPHSFLVS 72 (101)
T ss_pred cceEEEEEecCCC-CceeEEEEEeCC--EEEEEEcccccCCCcEEEEEEEecccEEEEeC--------CCCCcCceEEEe
Confidence 6789999987652 454444555222 3333333332 12 222222222222211100 011334568898
Q ss_pred ecccceEEEEeCCchhHhhHHHHHHHHH
Q 018315 319 TVLRGVVEFECRSQREYDIWTQGVARLL 346 (358)
Q Consensus 319 Ta~~GvvEFec~s~~~~q~W~~gI~~lL 346 (358)
+.+ ..++|-|+|+.+++.|.+.|+..+
T Consensus 73 ~~~-rsf~l~A~s~eEk~~W~~ai~~~i 99 (101)
T cd01219 73 GKQ-RCLELQARTQKEKNDWVQAIFSII 99 (101)
T ss_pred cCC-cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 888 789999999999999999998765
No 9
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.66 E-value=2.3 Score=35.21 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=54.2
Q ss_pred hcceeeeecCCCceeEEEEEEEEcCccEEEEEeeccccccccccccceEEEeeccCCCCCCCcccccCCCcceeEEEeec
Q 018315 241 RGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTV 320 (358)
Q Consensus 241 rG~eLlkrtrkG~lhwk~VSVyink~~qV~LKmKSkHv~GAfsKKKK~VV~dV~~~ipAWpgr~l~e~~e~r~YFglkTa 320 (358)
|+|.|+|..++| . |+..-+..|. . |=.-+++. +.+.++.|.+..+=.--.- +++.++......|=|.+.
T Consensus 4 kEG~L~K~~~k~-~-~~R~~FLFnD--~--LlY~~~~~----~~~~~y~~~~~i~L~~~~V-~~~~~~~~~~~~F~I~~~ 72 (99)
T cd01220 4 RQGCLLKLSKKG-L-QQRMFFLFSD--L--LLYTSKSP----TDQNSFRILGHLPLRGMLT-EESEHEWGVPHCFTIFGG 72 (99)
T ss_pred eEEEEEEEeCCC-C-ceEEEEEccc--e--EEEEEeec----CCCceEEEEEEEEcCceEE-eeccCCcCCceeEEEEcC
Confidence 789999999998 3 4444444442 1 11222222 2233444444321100000 001111123468888888
Q ss_pred ccceEEEEeCCchhHhhHHHHHHHHH
Q 018315 321 LRGVVEFECRSQREYDIWTQGVARLL 346 (358)
Q Consensus 321 ~~GvvEFec~s~~~~q~W~~gI~~lL 346 (358)
+ ..+.|-+.+..|++.|.+.|+.-+
T Consensus 73 ~-ks~~l~A~s~~Ek~~Wi~~i~~aI 97 (99)
T cd01220 73 Q-CAITVAASTRAEKEKWLADLSKAI 97 (99)
T ss_pred C-eEEEEECCCHHHHHHHHHHHHHHh
Confidence 7 789999999999999999998754
No 10
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=89.85 E-value=4.8 Score=28.95 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=29.9
Q ss_pred cceeEEEeecc--cceEEEEeCCchhHhhHHHHHHH
Q 018315 311 DRRYFGLKTVL--RGVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 311 ~r~YFglkTa~--~GvvEFec~s~~~~q~W~~gI~~ 344 (358)
....|-|.+.. ...+.|.|+++.+.+.|.+.|+.
T Consensus 63 ~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 63 DPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred CCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence 46789999884 69999999999999999998874
No 11
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=87.39 E-value=5.2 Score=34.41 Aligned_cols=94 Identities=13% Similarity=0.294 Sum_probs=57.2
Q ss_pred hcceeeeecCCCcee--EEEEEEEEcCccEE----EEEeec-cccccccccccceEEEeeccCCCCCCCcccccCCCcce
Q 018315 241 RGCELLKRTRKGDLH--WKIVSVYINRLNQV----MLKMKS-RHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRR 313 (358)
Q Consensus 241 rG~eLlkrtrkG~lh--wk~VSVyink~~qV----~LKmKS-kHv~GAfsKKKK~VV~dV~~~ipAWpgr~l~e~~e~r~ 313 (358)
+.|=|+.++.++ +. |-..-+...+.+.+ ...-+| +-++|.. -....++|-.+.. ...+.-|.|-
T Consensus 1 k~GYLy~~~k~~-~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v---~~~e~~~l~sc~~-----r~~~~~dRRF 71 (104)
T cd01249 1 KEGYLYMQEKSK-FGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAV---AQDETLTLKSCSR-----RKTESIDKRF 71 (104)
T ss_pred CCceEEEEcCCC-CCCeEEEEEEEEEcCCcEEEEEecccccccccCccc---ccceEEeeeeccc-----cccCCcccee
Confidence 356788999666 55 66554444443333 333333 1223322 2445566655532 2334446788
Q ss_pred eEEEeeccc-ceEEEEeCCchhHhhHHHHHH
Q 018315 314 YFGLKTVLR-GVVEFECRSQREYDIWTQGVA 343 (358)
Q Consensus 314 YFglkTa~~-GvvEFec~s~~~~q~W~~gI~ 343 (358)
+|=|.+.++ |.+-|...|+.+.+.|.+.|.
T Consensus 72 CFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 72 CFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred eEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 998854442 689999999999999998874
No 12
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=86.94 E-value=7.8 Score=30.32 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=30.6
Q ss_pred CcceeEEEeecccceEEEEeCCchhHhhHHHHHHHH
Q 018315 310 EDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARL 345 (358)
Q Consensus 310 e~r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~l 345 (358)
....+|.+.|.. .+..|.++|..+.+.|++.|+.+
T Consensus 66 ~~~~~f~i~t~~-r~~~~~a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 66 SRKGFFDLKTSK-RTYNFLAENINEAQRWKEKIQQC 100 (101)
T ss_pred CCceEEEEEeCC-ceEEEECCCHHHHHHHHHHHHhh
Confidence 356789998876 89999999999999999999864
No 13
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.82 E-value=6 Score=32.75 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=56.1
Q ss_pred hhHhhhcceeeeecCCCceeEEEEEEEEcCc-cEEEEEeeccccccccccccceEEEeeccCCCCCC----CcccccC--
Q 018315 236 RELLARGCELLKRTRKGDLHWKIVSVYINRL-NQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWP----GRHLLEG-- 308 (358)
Q Consensus 236 ~~~larG~eLlkrtrkG~lhwk~VSVyink~-~qV~LKmKSkHv~GAfsKKKK~VV~dV~~~ipAWp----gr~l~e~-- 308 (358)
.+.|.+|+.|.|-++++ .-+...+.++.. ++++-+=..+. ..+++-++-..||-... .+...+.
T Consensus 3 ~~~L~~G~~~~K~~~~~--~~~~~~f~ld~~~~~l~W~~~~~~-------~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~ 73 (115)
T cd01248 3 PEALQRGSVFIKWDDTS--RERRRLFRLDEKGFFLYWKDEGKK-------EKKVLDISSIKEIRTGKQPKDLKLRAELNQ 73 (115)
T ss_pred hHHHhCCCEEEEEcCCC--ceeeEEEEEcCCCcEEEEeCCCCc-------cccEEEehhhhhhhCCCCCcchHHhhhhhc
Confidence 46789999999998833 334466666653 45554421111 22333222233333221 1111111
Q ss_pred --CCcceeEEEeecc---cceEEEEeCCchhHhhHHHHHHHH
Q 018315 309 --GEDRRYFGLKTVL---RGVVEFECRSQREYDIWTQGVARL 345 (358)
Q Consensus 309 --~e~r~YFglkTa~---~GvvEFec~s~~~~q~W~~gI~~l 345 (358)
..+.+.|=|-=.. .-.+-|=|.|..+.+.|++||..|
T Consensus 74 ~~~~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~L 115 (115)
T cd01248 74 GNSLEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRKL 115 (115)
T ss_pred CCCccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhhC
Confidence 2455666332222 245899999999999999999865
No 14
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=85.33 E-value=1.4 Score=37.33 Aligned_cols=34 Identities=15% Similarity=0.381 Sum_probs=29.8
Q ss_pred CcceeEEEeecccceEEEEeCCchhHhhHHHHHHH
Q 018315 310 EDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 310 e~r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~ 344 (358)
+.+.-|-|.|.+ +.++|.|+|..+.+.|++.|+.
T Consensus 87 ~~~~~~~i~t~~-R~~~l~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 87 GLRHGLKITNSN-RSLKLKCKSSRKLKQWMASIED 120 (121)
T ss_pred CCceEEEEEcCC-cEEEEEeCCHHHHHHHHHHHHh
Confidence 345667788888 9999999999999999999985
No 15
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=85.33 E-value=7.5 Score=33.39 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=53.7
Q ss_pred hcceeeeecC-CCceeEEEEEEEEcCccEEEE---Eeecccccc----ccccccceEEEeec-cCCCCCCCcccccCCCc
Q 018315 241 RGCELLKRTR-KGDLHWKIVSVYINRLNQVML---KMKSRHVAG----TITKKKKNVVLEVI-PDMPAWPGRHLLEGGED 311 (358)
Q Consensus 241 rG~eLlkrtr-kG~lhwk~VSVyink~~qV~L---KmKSkHv~G----AfsKKKK~VV~dV~-~~ipAWpgr~l~e~~e~ 311 (358)
++|+|.+.++ +|..+=|.+..| ++++|+ +..+.++-| .|.=|-+..+.++. .|+|. +.+-
T Consensus 6 ~EG~L~ki~~~~~~~q~R~~FLF---d~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d--------~~~~ 74 (112)
T cd01261 6 MEGTLTRVGPSKKAKHERHVFLF---DGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD--------SSEY 74 (112)
T ss_pred ccCcEEEEecccCCcceEEEEEe---cCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC--------Cccc
Confidence 5778887764 455554555444 245555 222334433 23333332222221 12111 1123
Q ss_pred ceeEEEeecccceEEEEeCCchhHhhHHHHHHHHH
Q 018315 312 RRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLL 346 (358)
Q Consensus 312 r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~lL 346 (358)
..-|=|.|.+...++|-|++..+++.|.+.+..++
T Consensus 75 knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~ 109 (112)
T cd01261 75 KNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQ 109 (112)
T ss_pred CceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHh
Confidence 55687877543569999999999999999887654
No 16
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.38 E-value=8.7 Score=30.96 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=29.7
Q ss_pred ceeEEEeecccceEEEEeCCchhHhhHHHHHHHH
Q 018315 312 RRYFGLKTVLRGVVEFECRSQREYDIWTQGVARL 345 (358)
Q Consensus 312 r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~l 345 (358)
...|-|.|.+ ++..|.++|..+.+.|++.|+..
T Consensus 61 ~~~F~i~t~~-r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 61 KGRFEIHSNN-EVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CCEEEEEcCC-cEEEEECCCHHHHHHHHHHHHhh
Confidence 5689999988 89999999999999999999863
No 17
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=84.04 E-value=9 Score=31.01 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=53.9
Q ss_pred hcceeeeecCCCceeEEEEEEEEcCccEEEE-Eeec-cccccccccccceEEEeeccCCCCCCCcccccCCCcceeEEEe
Q 018315 241 RGCELLKRTRKGDLHWKIVSVYINRLNQVML-KMKS-RHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLK 318 (358)
Q Consensus 241 rG~eLlkrtrkG~lhwk~VSVyink~~qV~L-KmKS-kHv~GAfsKKKK~VV~dV~~~ipAWpgr~l~e~~e~r~YFglk 318 (358)
|.|-|.|+.... -.|+.-=+.+... +... |=.+ ...-|.|.-. .+.|.-+ .|.. ........|-|.
T Consensus 4 k~G~L~Kkg~~~-k~WkkRwfvL~~~-~L~yyk~~~~~~~~~~I~L~-~~~v~~~-~~~~--------~~~~~~~~F~I~ 71 (100)
T cd01233 4 KKGYLNFPEETN-SGWTRRFVVVRRP-YLHIYRSDKDPVERGVINLS-TARVEHS-EDQA--------AMVKGPNTFAVC 71 (100)
T ss_pred eeEEEEeeCCCC-CCcEEEEEEEECC-EEEEEccCCCccEeeEEEec-ccEEEEc-cchh--------hhcCCCcEEEEE
Confidence 567888876644 4588777777543 3222 2111 2233444333 2222211 1100 000134679999
Q ss_pred ecccceEEEEeCCchhHhhHHHHHHHH
Q 018315 319 TVLRGVVEFECRSQREYDIWTQGVARL 345 (358)
Q Consensus 319 Ta~~GvvEFec~s~~~~q~W~~gI~~l 345 (358)
|.+ +...|.|+|+.+.+.|.+.|+.+
T Consensus 72 t~~-rt~~~~A~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 72 TKH-RGYLFQALSDKEMIDWLYALNPL 97 (100)
T ss_pred CCC-CEEEEEcCCHHHHHHHHHHhhhh
Confidence 988 99999999999999999999764
No 18
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=80.87 E-value=16 Score=29.88 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=30.4
Q ss_pred eEEEeecccceEEEEeCCchhHhhHHHHHHHHHH
Q 018315 314 YFGLKTVLRGVVEFECRSQREYDIWTQGVARLLN 347 (358)
Q Consensus 314 YFglkTa~~GvvEFec~s~~~~q~W~~gI~~lL~ 347 (358)
.|-|.|.+ ++..|.|++..+.+.|++.|+..|.
T Consensus 69 ~F~i~t~~-Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 69 GVTLVTPE-RKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred eEEEEeCC-eEEEEECCCHHHHHHHHHHHHHHhc
Confidence 79999987 9999999999999999999998764
No 19
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=79.03 E-value=22 Score=26.74 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=51.4
Q ss_pred ceeeeecCCCceeEEEEEEEEcCccEEEEEeeccccccccccccceEEEeeccCCCCCCCcccccCCCcceeEEEeeccc
Q 018315 243 CELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTVLR 322 (358)
Q Consensus 243 ~eLlkrtrkG~lhwk~VSVyink~~qV~LKmKSkHv~GAfsKKKK~VV~dV~~~ipAWpgr~l~e~~e~r~YFglkTa~~ 322 (358)
|-|+|..+.. =.|+.-=++++ .+.+.+ -+++.-.+ ..-...+.++-+.. ....++...|=|.|.+.
T Consensus 3 G~L~k~~~~~-~~W~~r~~vl~-~~~L~~-~~~~~~~~--~~~~~~i~l~~~~~---------~~~~~~~~~F~i~~~~~ 68 (91)
T cd01246 3 GWLLKWTNYL-KGWQKRWFVLD-NGLLSY-YKNKSSMR--GKPRGTILLSGAVI---------SEDDSDDKCFTIDTGGD 68 (91)
T ss_pred EEEEEecccC-CCceeeEEEEE-CCEEEE-EecCccCC--CCceEEEEeceEEE---------EECCCCCcEEEEEcCCC
Confidence 4567766544 46888777775 344443 33332111 11222222222211 01112356788888776
Q ss_pred ceEEEEeCCchhHhhHHHHHHH
Q 018315 323 GVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 323 GvvEFec~s~~~~q~W~~gI~~ 344 (358)
..+.|.++|..+.+.|++.|+.
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHh
Confidence 7899999999999999999864
No 20
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=76.80 E-value=25 Score=27.67 Aligned_cols=33 Identities=9% Similarity=0.210 Sum_probs=28.9
Q ss_pred cceeEEEeecccceEEEEeCCchhHhhHHHHHH
Q 018315 311 DRRYFGLKTVLRGVVEFECRSQREYDIWTQGVA 343 (358)
Q Consensus 311 ~r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~ 343 (358)
....|-|.|...+.+.|.++|..+.+.|++.|.
T Consensus 62 k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~ 94 (96)
T cd01260 62 KKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLI 94 (96)
T ss_pred CceEEEECCCCCcEEEEEeCCHHHHHHHHHHHH
Confidence 466799988776889999999999999999885
No 21
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=74.75 E-value=7.1 Score=40.47 Aligned_cols=84 Identities=23% Similarity=0.303 Sum_probs=55.3
Q ss_pred eeeecCCCceeEEEEEEEEcCccEEEEEeeccccccccccccceEEEeeccCCCCCCCcccccCCCcceeEEEe-ecccc
Q 018315 245 LLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLK-TVLRG 323 (358)
Q Consensus 245 LlkrtrkG~lhwk~VSVyink~~qV~LKmKSkHv~GAfsKKKK~VV~dV~~~ipAWpgr~l~e~~e~r~YFglk-Ta~~G 323 (358)
.+--|..|.|+|+ -.++=.|-|.|.-+| -...-+|-+|..+- |.+..-++||-. --.+.
T Consensus 23 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 82 (481)
T PLN02958 23 PLTLTAEGKLRWT-------DSGQRCLTVEKEVLG-FVIEGSKIRVKTIV------------EKGGGICCRGSAGALARK 82 (481)
T ss_pred eEEeccCCEEEee-------cCCcceEEEeeeeeE-EEEeCCEEEEEEEE------------ecCCcccccCCCCCceee
Confidence 4455689999999 245667777776664 33333444444443 233455666542 12235
Q ss_pred eEEEEeCCchhHhhHHHHHHHHHHH
Q 018315 324 VVEFECRSQREYDIWTQGVARLLNV 348 (358)
Q Consensus 324 vvEFec~s~~~~q~W~~gI~~lL~~ 348 (358)
.+.|+|.|...++.|++.|...|.-
T Consensus 83 ~~~~~~~~~~~~~~w~~~~~~~~~~ 107 (481)
T PLN02958 83 DFVFEPLSDESRRLWCQKLRDYLDS 107 (481)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 6999999999999999999998853
No 22
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=72.88 E-value=6 Score=31.97 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=29.5
Q ss_pred cceeEEEeecccceEEEEeCCchhHhhHHHHHHH
Q 018315 311 DRRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 311 ~r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~ 344 (358)
+..-|-|.|....+..|.++|..+.+.|++.|++
T Consensus 57 ~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 57 DENRFDISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 3567888777768999999999999999999985
No 23
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.45 E-value=26 Score=30.12 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=32.4
Q ss_pred CcceeEEEeecccceEEEEeCCchhHhhHHHHHHHHH
Q 018315 310 EDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLL 346 (358)
Q Consensus 310 e~r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~lL 346 (358)
....=|.|.|.+.+.+-|.|.|..+-+.|++.|+..-
T Consensus 75 Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 75 KKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVA 111 (117)
T ss_pred CCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 3667799999987889999999999999999998643
No 24
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=68.90 E-value=67 Score=26.80 Aligned_cols=25 Identities=16% Similarity=0.415 Sum_probs=21.8
Q ss_pred ceEEEEeCCchhHhhHHHHHHHHHH
Q 018315 323 GVVEFECRSQREYDIWTQGVARLLN 347 (358)
Q Consensus 323 GvvEFec~s~~~~q~W~~gI~~lL~ 347 (358)
.++.|.|++..+.+.|++.|+..+.
T Consensus 90 ~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 90 SVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHh
Confidence 4677999999999999999988763
No 25
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=68.31 E-value=58 Score=26.78 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=28.7
Q ss_pred cceeEEEeecccceEEEEeCCchhHhhHHHHHHH
Q 018315 311 DRRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 311 ~r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~ 344 (358)
....|-|.|.. ++..|.|+|..+.+.|++.|+.
T Consensus 73 ~~~~F~i~t~~-r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 73 FKYPFQVVHDE-GTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred cCccEEEEeCC-CeEEEEcCCHHHHHHHHHHHHh
Confidence 45678899877 7899999999999999999875
No 26
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=67.06 E-value=11 Score=31.52 Aligned_cols=36 Identities=25% Similarity=0.511 Sum_probs=28.8
Q ss_pred cceeEEEeecc--cceEEEEeCCchhHhhHHHHHHHHH
Q 018315 311 DRRYFGLKTVL--RGVVEFECRSQREYDIWTQGVARLL 346 (358)
Q Consensus 311 ~r~YFglkTa~--~GvvEFec~s~~~~q~W~~gI~~lL 346 (358)
+.+-|-|...+ +..++|.++|..+++.|.+.|+.+|
T Consensus 58 d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 58 EPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 36888764332 2479999999999999999999876
No 27
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=66.17 E-value=18 Score=36.82 Aligned_cols=105 Identities=17% Similarity=0.262 Sum_probs=61.6
Q ss_pred cceeeeecCCCceeEEEEEEEEc----CccEEEEEee----ccccccccc---cccceEEEeeccCCCCCCCcccccCCC
Q 018315 242 GCELLKRTRKGDLHWKIVSVYIN----RLNQVMLKMK----SRHVAGTIT---KKKKNVVLEVIPDMPAWPGRHLLEGGE 310 (358)
Q Consensus 242 G~eLlkrtrkG~lhwk~VSVyin----k~~qV~LKmK----SkHv~GAfs---KKKK~VV~dV~~~ipAWpgr~l~e~~e 310 (358)
.|.+.+ ..+++.||..-+.|. ...++..... +-.+.=|++ ..+.||-.-|..=..+.|=...+-++.
T Consensus 376 ~g~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (496)
T PTZ00283 376 EGIVKK--QSSDLSWKRRYLCIRGELEKGETLTVDVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPVPSKYTGSN 453 (496)
T ss_pred eeEEec--ccCCcccceeEEEEeeecccCceeecCCCccchhhhhhhhhhhhhhhhhcccCchhhhcccccccHHhhCCC
Confidence 344444 366777888877775 2223333222 222222332 234566422221112222222444444
Q ss_pred cceeEEEeecccceEEEEeCCchhHhhHHHHHHHHHHH
Q 018315 311 DRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLNV 348 (358)
Q Consensus 311 ~r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~lL~~ 348 (358)
...-|.|.+.....+-|.|++..+++.|.+.||+-|-+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (496)
T PTZ00283 454 AAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLGI 491 (496)
T ss_pred CCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcCC
Confidence 57789999888677999999999999999999987743
No 28
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=65.77 E-value=17 Score=30.53 Aligned_cols=92 Identities=13% Similarity=0.225 Sum_probs=47.2
Q ss_pred eecCCCceeEEEEEEEEcCccEEEEEeecc--cccccccc---ccce---EEEeeccCCCCCCCcccccCCCcceeEEEe
Q 018315 247 KRTRKGDLHWKIVSVYINRLNQVMLKMKSR--HVAGTITK---KKKN---VVLEVIPDMPAWPGRHLLEGGEDRRYFGLK 318 (358)
Q Consensus 247 krtrkG~lhwk~VSVyink~~qV~LKmKSk--Hv~GAfsK---KKK~---VV~dV~~~ipAWpgr~l~e~~e~r~YFglk 318 (358)
|+++.+.=.|+.+-+-+. |+++.=-|.. ...+.+.- -+.. -++++..-+.. + -.+-......|=|+
T Consensus 17 kk~~~~~R~Wk~~y~vL~--g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~-~---a~dY~Kr~~VFrL~ 90 (119)
T PF15410_consen 17 KKASRSKRSWKQVYAVLQ--GGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAE-I---ASDYTKRKNVFRLR 90 (119)
T ss_dssp CC---S---EEEEEEEEE--TTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEE-E---ETTBTTCSSEEEEE
T ss_pred CCcCCCCCCccEEeEEEE--CCEEEEEccCcccccCCcccccccccCcceeEEEecceEEE-e---CcccccCCeEEEEE
Confidence 456667789999999994 4554444442 22222221 0111 11222211100 0 01112367899999
Q ss_pred ecccceEEEEeCCchhHhhHHHHHHH
Q 018315 319 TVLRGVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 319 Ta~~GvvEFec~s~~~~q~W~~gI~~ 344 (358)
|++.+..=|.+.|..+-+.|++.|+.
T Consensus 91 ~~dg~e~Lfqa~~~~~m~~Wi~~IN~ 116 (119)
T PF15410_consen 91 TADGSEYLFQASDEEEMNEWIDAINY 116 (119)
T ss_dssp -TTS-EEEEE-SSHHHHHHHHHHHHH
T ss_pred eCCCCEEEEECCCHHHHHHHHHHHhh
Confidence 99977899999999999999999975
No 29
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=63.41 E-value=14 Score=31.17 Aligned_cols=32 Identities=13% Similarity=0.228 Sum_probs=29.5
Q ss_pred ceeEEEeecccceEEEEeCCchhHhhHHHHHHH
Q 018315 312 RRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 312 r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~ 344 (358)
+..|-+.|.. .+..|.++|..+.+.|.+.|+.
T Consensus 68 ~~~Fei~tp~-rt~~l~A~se~e~e~WI~~i~~ 99 (101)
T cd01264 68 PKAFEIFTAD-KTYILKAKDEKNAEEWLQCLNI 99 (101)
T ss_pred CcEEEEEcCC-ceEEEEeCCHHHHHHHHHHHHh
Confidence 4799999999 9999999999999999998874
No 30
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=62.11 E-value=12 Score=31.28 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=29.9
Q ss_pred cceeEEEeecccceEEEEeCCchhHhhHHHHHHHH
Q 018315 311 DRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARL 345 (358)
Q Consensus 311 ~r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~l 345 (358)
+..-|.|.|.+ +..-|-|+|..+.+.|.+.|..|
T Consensus 68 ~~~~f~i~t~d-r~f~l~aese~E~~~Wi~~i~~~ 101 (101)
T cd01257 68 HRHLIALYTRD-EYFAVAAENEAEQDSWYQALLEL 101 (101)
T ss_pred cCeEEEEEeCC-ceEEEEeCCHHHHHHHHHHHhhC
Confidence 45789999988 89999999999999999998653
No 31
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=58.16 E-value=1.2e+02 Score=25.77 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=30.5
Q ss_pred ceeEEEeecccceEEEEeCCchhHhhHHHHHHHHHH
Q 018315 312 RRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLN 347 (358)
Q Consensus 312 r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~lL~ 347 (358)
..-|=|.|.+ ..+.+-|.|..+++.|.+.|+.-..
T Consensus 65 ~n~f~I~~~~-kSf~v~A~s~~eK~eWl~~i~~ai~ 99 (104)
T cd01218 65 RNGWIIKTPT-KSFAVYAATETEKREWMLHINKCVT 99 (104)
T ss_pred cceEEEecCC-eEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 5668899988 8999999999999999999987553
No 32
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=58.11 E-value=85 Score=24.97 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=28.6
Q ss_pred cceeEEEeecccceEEEEeCCchhHhhHHHHHHH
Q 018315 311 DRRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 311 ~r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~ 344 (358)
...-|-|++.....+-|.++|..+.+.|++.|+.
T Consensus 70 ~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 70 KKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 3456999887756899999999999999999863
No 33
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=52.68 E-value=21 Score=29.80 Aligned_cols=34 Identities=12% Similarity=0.321 Sum_probs=27.4
Q ss_pred CcceeEEEeecccceEEEEeCCchhHhhHHHHHHH
Q 018315 310 EDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 310 e~r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~ 344 (358)
....-|-+.|.+ +.+-|.|++..+...|.+.|+.
T Consensus 78 ~~~~~~~i~T~~-kt~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 78 IHLKVFSIFTPT-KTFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp -SSEEEEEE-SS--EEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCCcEEECCC-cEEEEEECCHHHHHHHHHHHHh
Confidence 356667888888 8999999999999999999874
No 34
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=51.27 E-value=1.5e+02 Score=25.45 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=30.8
Q ss_pred cceeEEEeecccc----eEEEEeCCchhHhhHHHHHHHHHH
Q 018315 311 DRRYFGLKTVLRG----VVEFECRSQREYDIWTQGVARLLN 347 (358)
Q Consensus 311 ~r~YFglkTa~~G----vvEFec~s~~~~q~W~~gI~~lL~ 347 (358)
+.+-|.|....+. .+-+...|...++.|+..|..+|.
T Consensus 73 d~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 73 DPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 5678999665543 678999999999999999999985
No 35
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=51.23 E-value=1.4e+02 Score=24.79 Aligned_cols=31 Identities=6% Similarity=0.168 Sum_probs=27.4
Q ss_pred eeEEEeecccceEEEEeCCchhHhhHHHHHHH
Q 018315 313 RYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 313 ~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~ 344 (358)
--|-+.|.+ ++.-|.|+|..+.+.|.+.|+.
T Consensus 67 ~~fqivt~~-r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 67 DIITIVCED-DTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred ceEEEEeCC-CeEEEECCCHHHHHHHHHHHhc
Confidence 358888888 8999999999999999998864
No 36
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=48.71 E-value=1.4e+02 Score=24.99 Aligned_cols=89 Identities=22% Similarity=0.326 Sum_probs=51.9
Q ss_pred ceeeeecCCCceeEEEEEEEEcC---ccEEEEEeeccc---cccccccccceEEEeeccCCCCCCCcccccCCCcceeEE
Q 018315 243 CELLKRTRKGDLHWKIVSVYINR---LNQVMLKMKSRH---VAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFG 316 (358)
Q Consensus 243 ~eLlkrtrkG~lhwk~VSVyink---~~qV~LKmKSkH---v~GAfsKKKK~VV~dV~~~ipAWpgr~l~e~~e~r~YFg 316 (358)
|-|+|++..-.--||+=.+.+.. .++.-+ .++.. --| +.--..+.|..|++. +. +..-+|=
T Consensus 3 G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~y-f~~~~~~~p~g-li~l~~~~V~~v~ds--------~~---~r~~cFe 69 (98)
T cd01245 3 GNLLKRTKSVTKLWKTLYFALILDGSRSHESL-LSSPKKTKPIG-LIDLSDAYLYPVHDS--------LF---GRPNCFQ 69 (98)
T ss_pred CccccCCCCcccccceeEEEEecCCCCceEEE-EcCCCCCCccc-eeeccccEEEEcccc--------cc---CCCeEEE
Confidence 34778875326678887766631 123221 11111 111 111122245555544 11 4568899
Q ss_pred EeecccceEEEEeCCchhHhhHHHHHHH
Q 018315 317 LKTVLRGVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 317 lkTa~~GvvEFec~s~~~~q~W~~gI~~ 344 (358)
|.+..++.+=|-|.+..+++.|.+.|+.
T Consensus 70 l~~~~~~~~y~~~a~~~er~~Wi~~l~~ 97 (98)
T cd01245 70 IVERALPTVYYSCRSSEERDKWIESLQA 97 (98)
T ss_pred EecCCCCeEEEEeCCHHHHHHHHHHHhc
Confidence 9888744788999999999999999874
No 37
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=47.05 E-value=28 Score=28.42 Aligned_cols=31 Identities=16% Similarity=0.489 Sum_probs=27.1
Q ss_pred eEEEeecccceEEEEeCCchhHhhHHHHHHHH
Q 018315 314 YFGLKTVLRGVVEFECRSQREYDIWTQGVARL 345 (358)
Q Consensus 314 YFglkTa~~GvvEFec~s~~~~q~W~~gI~~l 345 (358)
-|-+.|.+ ++.-|-++|..+.+.|++.|..+
T Consensus 77 ~f~i~t~~-r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 77 GFDIETIV-RDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEEeCC-ccEEEEECCHHHHHHHHHHHHhh
Confidence 48888877 89999999999999999999654
No 38
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=46.29 E-value=1.7e+02 Score=25.47 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=51.8
Q ss_pred cceeeeecC-CCceeEEEEEEEEcCccEEEEEeeccccccccccccceEEEeecc--CCCCCCCcccccCCC-cceeEEE
Q 018315 242 GCELLKRTR-KGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIP--DMPAWPGRHLLEGGE-DRRYFGL 317 (358)
Q Consensus 242 G~eLlkrtr-kG~lhwk~VSVyink~~qV~LKmKSkHv~GAfsKKKK~VV~dV~~--~ipAWpgr~l~e~~e-~r~YFgl 317 (358)
.|||.+.++ +|.-+=|.+.+|- .|+|+ -|+.++-|..=..|.-+.++.+. |+|. |++. +.+. =.--|=|
T Consensus 5 ~Gel~~~s~~~g~~q~R~~FLFD---~~LI~-CKkd~~r~~~~~yKgri~l~~~~I~d~~D--g~~~-~~~~~~knafkl 77 (109)
T cd01224 5 QGEATRQKQNKGWNSSRVLFLFD---HQMVL-CKKDLIRRDHLYYKGRIDLDRCEVVNIRD--GKMF-SSGHTIKNSLKI 77 (109)
T ss_pred eeeEEEEecccCCcccEEEEEec---ceEEE-EecccccCCcEEEEEEEEcccEEEEECCC--Cccc-cCCceeEEEEEE
Confidence 477887775 4766655554443 35555 66666656555566666555432 2111 2111 1111 1122222
Q ss_pred --eecccceEEEEeCCchhHhhHHHHHH
Q 018315 318 --KTVLRGVVEFECRSQREYDIWTQGVA 343 (358)
Q Consensus 318 --kTa~~GvvEFec~s~~~~q~W~~gI~ 343 (358)
.+.+ -.+.|-|++..+++.|.+.+.
T Consensus 78 ~~~~~~-~~~~f~~Kt~e~K~~Wm~a~~ 104 (109)
T cd01224 78 YSESTD-EWYLFSFKSAERKHRWLSAFA 104 (109)
T ss_pred EEcCCC-eEEEEEECCHHHHHHHHHHHH
Confidence 2223 238999999999999998764
No 39
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=45.06 E-value=74 Score=31.98 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=59.7
Q ss_pred hhcceeeeecCCCceeEEEEEEEEcCccEEEEEeeccc-cccccccccceE--EEeeccCCCCCCCcccccCCCcceeEE
Q 018315 240 ARGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRH-VAGTITKKKKNV--VLEVIPDMPAWPGRHLLEGGEDRRYFG 316 (358)
Q Consensus 240 arG~eLlkrtrkG~lhwk~VSVyink~~qV~LKmKSkH-v~GAfsKKKK~V--V~dV~~~ipAWpgr~l~e~~e~r~YFg 316 (358)
...|-|++...+. .|+.=-+++. .+++.+..+... ..|. ..+--+. |.+|+...+ +... ...-+|-
T Consensus 378 ~~~G~l~k~~~~~--~wk~ry~~l~-~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~v~pv~~------~~~~-~~~~~~~ 446 (478)
T PTZ00267 378 THGGYLYKYSSDM--RWKKRYFYIG-NGQLRISLSENPENDGV-APKSVNLETVNDVFPVPE------VYSQ-KHPNQLV 446 (478)
T ss_pred ccceEEeccCCCc--chhhheEEec-CCceEEEeccccccCCC-CCccccHHHhcccccccH------HhcC-CCCceEE
Confidence 4567777776655 5776667774 577777655221 1222 1111122 666665411 1111 2355688
Q ss_pred EeecccceEEEEeCCchhHhhHHHHHHHHH
Q 018315 317 LKTVLRGVVEFECRSQREYDIWTQGVARLL 346 (358)
Q Consensus 317 lkTa~~GvvEFec~s~~~~q~W~~gI~~lL 346 (358)
++|.....+=|.++|..+.+.|...|+.-|
T Consensus 447 i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 447 LWFNNGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EEecCCcEEEEecCChHHHHHHHHHHHHHh
Confidence 888775568899999999999999999876
No 40
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=40.05 E-value=49 Score=27.90 Aligned_cols=32 Identities=9% Similarity=0.058 Sum_probs=28.7
Q ss_pred cceeEEEeecccceEEEEeCCchhHhhHHHHHH
Q 018315 311 DRRYFGLKTVLRGVVEFECRSQREYDIWTQGVA 343 (358)
Q Consensus 311 ~r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~ 343 (358)
+...|-|.|.+ ++.-|-|++..+.+.|.+.|+
T Consensus 70 ~~~~f~I~tp~-R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 70 QKFSICILTPD-KEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred CccEEEEECCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 35679999998 999999999999999999876
No 41
>PF15409 PH_8: Pleckstrin homology domain
Probab=35.09 E-value=63 Score=27.00 Aligned_cols=34 Identities=12% Similarity=0.396 Sum_probs=28.6
Q ss_pred CcceeEEEeecccceEEEEeCCchhHhhHHHHHHH
Q 018315 310 EDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 310 e~r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~ 344 (358)
++.+-|-|.|.. -+--|++.|+.+.|.|++.++.
T Consensus 54 ~~~~~I~idsg~-~i~hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 54 KKSRRIDIDSGD-EIWHLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred CCCCEEEEEcCC-eEEEEEcCCHHHHHHHHHHHHh
Confidence 456677787777 6899999999999999999874
No 42
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=32.91 E-value=2.3e+02 Score=25.10 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=17.1
Q ss_pred EEEEeCCchhHhhHHHHHH
Q 018315 325 VEFECRSQREYDIWTQGVA 343 (358)
Q Consensus 325 vEFec~s~~~~q~W~~gI~ 343 (358)
++|.|+|+.++++|.+.+.
T Consensus 101 l~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 101 LLLSADSQSDRERWLSALA 119 (125)
T ss_pred EEEECCCHHHHHHHHHhcC
Confidence 7888999999999998874
No 43
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=31.66 E-value=88 Score=27.82 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=30.3
Q ss_pred cceeEEEeeccc-ceEEEEeCCchhHhhHHHHHHHHH-HHH
Q 018315 311 DRRYFGLKTVLR-GVVEFECRSQREYDIWTQGVARLL-NVA 349 (358)
Q Consensus 311 ~r~YFglkTa~~-GvvEFec~s~~~~q~W~~gI~~lL-~~~ 349 (358)
+.+-|.|.+..+ -.+.|.|.+...++.|++.|..+| .+.
T Consensus 79 d~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q~ 119 (133)
T cd01227 79 DTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQL 119 (133)
T ss_pred CccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 477887755431 358899999999999999999988 443
No 44
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=31.10 E-value=1.8e+02 Score=32.18 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=63.1
Q ss_pred HhhhcceeeeecCC-CceeEEEEEEEEcCccEEEEEeeccccccccccccceEEEeeccCCCCCCCcccccC--CCccee
Q 018315 238 LLARGCELLKRTRK-GDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEG--GEDRRY 314 (358)
Q Consensus 238 ~larG~eLlkrtrk-G~lhwk~VSVyink~~qV~LKmKSkHv~GAfsKKKK~VV~dV~~~ipAWpgr~l~e~--~e~r~Y 314 (358)
-|=|+|-|+|.+-+ |.--=| +-|..|. --.-.++|. .+. .+|..-.-+ +-|++-.+.++ .+-..-
T Consensus 271 eLiKEG~l~Kis~k~~~~qeR-ylfLFNd-~~lyc~~r~-~~~--~~k~~~r~~-------~s~~~~~v~~~~~~~~~~t 338 (623)
T KOG4424|consen 271 ELIKEGQLQKISAKNGTTQER-YLFLFND-ILLYCKPRK-RLP--GSKYEVRAR-------CSISHMQVQEDDNEELPHT 338 (623)
T ss_pred HHhhccceeeeeccCCCccee-EEEEehh-HHHhhhhhh-hcc--cceecccee-------eccCcchhcccccccCCce
Confidence 34588899999988 655444 4445542 122334444 332 333333332 33444455444 223556
Q ss_pred EEEeecccceEEEEeCCchhHhhHHHHHHHHHHHHHHhh
Q 018315 315 FGLKTVLRGVVEFECRSQREYDIWTQGVARLLNVAAERS 353 (358)
Q Consensus 315 FglkTa~~GvvEFec~s~~~~q~W~~gI~~lL~~~~~~~ 353 (358)
|.|.--+ +-|||.-.+..+++.|++.|+.-+...-|+.
T Consensus 339 F~~~G~~-r~vel~a~t~~ek~eWv~~I~~~Id~~kq~~ 376 (623)
T KOG4424|consen 339 FILTGKK-RGVELQARTEQEKKEWVQAIQDAIDKHKQCR 376 (623)
T ss_pred EEEeccc-ceEEeecCchhhHHHHHHHHHHHHHHHHHHH
Confidence 7665434 6699999999999999999999887665553
No 45
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=27.74 E-value=32 Score=24.06 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=16.4
Q ss_pred ccccccccCCcchhhhhhhhHH
Q 018315 48 SATPVAAAGGKTVGRWLKDRRE 69 (358)
Q Consensus 48 ~~~~~~~~~~~tvgrWlk~~k~ 69 (358)
.+.+.+..+.++|++||.|.+-
T Consensus 11 ~~~~~g~~~~k~lkk~~~e~ki 32 (47)
T TIGR02433 11 RIKLLGRKGSKKLKKLFIDAKV 32 (47)
T ss_pred EEEECCCCCCchHHHHHHHcCC
Confidence 3455555678999999998763
No 46
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=27.38 E-value=32 Score=30.53 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=9.6
Q ss_pred CCCCCcccccccCCCCC
Q 018315 24 NIHGGYHHHQLNTGSTF 40 (358)
Q Consensus 24 ~~~~~~~~~~~~~~~~f 40 (358)
-|.||| |.++|.-.+
T Consensus 10 PP~GGY--~pv~y~R~~ 24 (130)
T PF06212_consen 10 PPPGGY--PPVQYKRNL 24 (130)
T ss_pred CCCCCC--CCCcccccC
Confidence 488999 555555434
No 47
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=24.92 E-value=36 Score=27.62 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=13.6
Q ss_pred hcceeeeecCCCceeEEEEEEEEcCccEEEEEeecc
Q 018315 241 RGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSR 276 (358)
Q Consensus 241 rG~eLlkrtrkG~lhwk~VSVyink~~qV~LKmKSk 276 (358)
+.....-+..+|.=-++.|+|+++.+|++.+-++++
T Consensus 20 ~~~~k~FCp~CGn~TL~rvsvsv~~~G~~~~~~~~~ 55 (73)
T PF08772_consen 20 KDMTKQFCPKCGNATLKRVSVSVDEDGKIKLHLKKN 55 (73)
T ss_dssp S-SS--S-SSS--S--EEEE-B--SS---B------
T ss_pred CCCCceeCcccCCCcceEEEEEECCCCCEEEEecCC
Confidence 345566788899999999999999999999888876
No 48
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=23.81 E-value=86 Score=25.40 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=24.2
Q ss_pred CCcccccccc-----ccccc------ccCCcchhhhhhhhHHHhHHHHhhh
Q 018315 39 TFRTPAAAAS-----ATPVA------AAGGKTVGRWLKDRREKKKEEARVH 78 (358)
Q Consensus 39 ~fr~~~~~~~-----~~~~~------~~~~~tvgrWlk~~k~KKKEe~R~~ 78 (358)
+|||.+.|.- |++|. ++.+..+..||++-.|-.++.+|.+
T Consensus 6 kFkKv~~pGa~~lP~IIGGSDLi~h~~~knseleeWl~~e~E~~~q~~reE 56 (65)
T PF08599_consen 6 KFKKVAYPGAGGLPHIIGGSDLIAHHAGKNSELEEWLRQEMEEQRQQAREE 56 (65)
T ss_pred hhcccccCCCCCCCeeecchhhhhccccccccHHHHHHHHHHHHHHHHHHH
Confidence 6777776643 22211 1445689999999877554444443
No 49
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=23.22 E-value=4.8e+02 Score=22.37 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=28.0
Q ss_pred ceeEEEeecccceEEEEeCCchhHhhHHHHHHH
Q 018315 312 RRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 344 (358)
Q Consensus 312 r~YFglkTa~~GvvEFec~s~~~~q~W~~gI~~ 344 (358)
+--|-|+|.. +.--|.|++..+++.|-+-|++
T Consensus 65 kNafki~t~~-~s~i~qaes~~~K~eWl~~le~ 96 (100)
T cd01226 65 KKVLKLLIFP-ESRIYQCESARIKTEWFEELEQ 96 (100)
T ss_pred CceEEEEeCC-ccEEEEeCCHHHHHHHHHHHHH
Confidence 5568899988 7777999999999999998875
No 50
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.12 E-value=79 Score=27.38 Aligned_cols=20 Identities=20% Similarity=0.626 Sum_probs=18.1
Q ss_pred ceEEEEeCCchhHhhHHHHH
Q 018315 323 GVVEFECRSQREYDIWTQGV 342 (358)
Q Consensus 323 GvvEFec~s~~~~q~W~~gI 342 (358)
+.+.|.|+|..+|+.|.+..
T Consensus 80 r~y~l~cdsEeqya~Wmaa~ 99 (106)
T cd01237 80 NEVWLRCDNEKQYAKWMAAC 99 (106)
T ss_pred eEEEEECCCHHHHHHHHHHH
Confidence 47999999999999999875
No 51
>PF05589 DUF768: Protein of unknown function (DUF768); InterPro: IPR008486 This family consists of several uncharacterised hypothetical proteins from Rhizobium loti (Mesorhizobium loti).
Probab=21.39 E-value=1.3e+02 Score=24.06 Aligned_cols=31 Identities=39% Similarity=0.409 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHcCCCchhHHHhhhhhh
Q 018315 123 SAATLVAAQCVETAEAMGAEREHLAAVVSSAV 154 (358)
Q Consensus 123 SAAaLvAaqCvE~AE~~GA~rd~vasaV~SAV 154 (358)
|++. +|-+|...|+..|-.++.+..-|.+..
T Consensus 27 s~~~-La~kl~adA~a~Gi~~~ei~eEvg~i~ 57 (64)
T PF05589_consen 27 SAAE-LAEKLFADAEAAGIPREEIEEEVGSIY 57 (64)
T ss_pred hHHH-HHHHHHHHHHHcCCCHHHHHHHhccHH
Confidence 5555 899999999999999999988886643
Done!