BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018316
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 81/137 (59%), Gaps = 16/137 (11%)
Query: 93 GTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKG 152
G+TAV + IV+ N GDSRAVL R K+ A+ L+VD KPD E ARI+ G
Sbjct: 158 GSTAVVALVCSSHIVVSNCGDSRAVL-FRGKE----AMPLSVDHKPDREDEYARIENAGG 212
Query: 153 RVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEKDEFIIL 212
+V Q ARV+ LAM+R+ GD LK + +I P++ + + +DE +IL
Sbjct: 213 KVIQWQG----ARVF------GVLAMSRSIGDRYLKPY-VIPEPEVTFMPRSREDECLIL 261
Query: 213 ATDGVWDVISNKEAVEI 229
A+DG+WDV++N+E EI
Sbjct: 262 ASDGLWDVMNNQEVCEI 278
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 81/137 (59%), Gaps = 16/137 (11%)
Query: 93 GTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKG 152
G+TAV + IV+ N GDSRAVL R K+ A+ L+VD KPD E ARI+ G
Sbjct: 165 GSTAVVALVCSSHIVVSNCGDSRAVL-FRGKE----AMPLSVDHKPDREDEYARIENAGG 219
Query: 153 RVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEKDEFIIL 212
+V Q ARV+ LAM+R+ GD LK + +I P++ + + +DE +IL
Sbjct: 220 KVIQWQG----ARVF------GVLAMSRSIGDRYLKPY-VIPEPEVTFMPRSREDECLIL 268
Query: 213 ATDGVWDVISNKEAVEI 229
A+DG+WDV++N+E EI
Sbjct: 269 ASDGLWDVMNNQEVCEI 285
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 81/137 (59%), Gaps = 16/137 (11%)
Query: 93 GTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKG 152
G+TAV + IV+ N GDSRAVL R K+ A+ L+VD KPD E ARI+ G
Sbjct: 155 GSTAVVALVCSSHIVVSNCGDSRAVL-FRGKE----AMPLSVDHKPDREDEYARIENAGG 209
Query: 153 RVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEKDEFIIL 212
+V Q ARV+ LAM+R+ GD LK + +I P++ + + +DE +IL
Sbjct: 210 KVIQWQG----ARVF------GVLAMSRSIGDRYLKPY-VIPEPEVTFMPRSREDECLIL 258
Query: 213 ATDGVWDVISNKEAVEI 229
A+DG+WDV++N+E EI
Sbjct: 259 ASDGLWDVMNNQEVCEI 275
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 81/137 (59%), Gaps = 16/137 (11%)
Query: 93 GTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKG 152
G+TAV + IV+ N GDSRAVL R K+ A+ L+VD KPD E ARI+ G
Sbjct: 156 GSTAVVALVCSSHIVVSNCGDSRAVL-FRGKE----AMPLSVDHKPDREDEYARIENAGG 210
Query: 153 RVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEKDEFIIL 212
+V Q ARV+ LAM+R+ GD LK + +I P++ + + +DE +IL
Sbjct: 211 KVIQWQG----ARVF------GVLAMSRSIGDRYLKPY-VIPEPEVTFMPRSREDECLIL 259
Query: 213 ATDGVWDVISNKEAVEI 229
A+DG+WDV++N+E EI
Sbjct: 260 ASDGLWDVMNNQEVCEI 276
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 81/137 (59%), Gaps = 16/137 (11%)
Query: 93 GTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKG 152
G+TAV + IV+ N GDSRAVL R K+ A+ L+VD KPD E ARI+ G
Sbjct: 141 GSTAVVALVCSSHIVVSNCGDSRAVL-FRGKE----AMPLSVDHKPDREDEYARIENAGG 195
Query: 153 RVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEKDEFIIL 212
+V Q ARV+ LAM+R+ GD LK + +I P++ + + +DE +IL
Sbjct: 196 KVIQWQG----ARVF------GVLAMSRSIGDRYLKPY-VIPEPEVTFMPRSREDECLIL 244
Query: 213 ATDGVWDVISNKEAVEI 229
A+DG+WDV++N+E EI
Sbjct: 245 ASDGLWDVMNNQEVCEI 261
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 81/137 (59%), Gaps = 16/137 (11%)
Query: 93 GTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKG 152
G+TAV + IV+ N GDSRAVL R K+ A+ L+VD KPD E ARI+ G
Sbjct: 152 GSTAVVALVCSSHIVVSNCGDSRAVL-FRGKE----AMPLSVDHKPDREDEYARIENAGG 206
Query: 153 RVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEKDEFIIL 212
+V Q ARV+ LAM+R+ GD LK + +I P++ + + +DE +IL
Sbjct: 207 KVIQWQG----ARVF------GVLAMSRSIGDRYLKPY-VIPEPEVTFMPRSREDECLIL 255
Query: 213 ATDGVWDVISNKEAVEI 229
A+DG+WDV++N+E EI
Sbjct: 256 ASDGLWDVMNNQEVCEI 272
>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|B Chain B, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|C Chain C, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
Length = 324
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 92 SGTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCK 151
+ +T+VT V + +G++GDSR E N L LTVD KPD P E RI +
Sbjct: 136 ASSTSVTAVLAKGFVAVGHLGDSRIAXGV-ETPNGLNCEFLTVDHKPDXPHEKLRIXRNG 194
Query: 152 GRVFALQD---EPEVARVWLPNNDSPG-----LAMARAFGDFCLKDFGLISVPDIYYRRL 203
G V L + +P + S G L +RAFG LK +GL + PD+ R+
Sbjct: 195 GSVEYLHNHNNKPFIRGGDFSFRKSRGEQPXQLQYSRAFGGKDLKXYGLSNQPDVRVVRV 254
Query: 204 TEKDEFIILATDGVWDVISNKEAVEI 229
T + ILATDG+WDV S +AVEI
Sbjct: 255 TPQHRVXILATDGLWDVXSAAQAVEI 280
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 87/185 (47%), Gaps = 27/185 (14%)
Query: 92 SGTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCK 151
SG+TAV ++ I N GDSRAVL N V T D KP PRE RIQ
Sbjct: 132 SGSTAVGVMISPKHIYFINCGDSRAVLYR----NGQVCFS-TQDHKPCNPREKERIQNAG 186
Query: 152 GRVFALQDEPEVARVWLPNNDSPGLAMARAFGDF---CLKDFG----LIS-VPDIYYRRL 203
G V + RV + LA++RA GD+ C+ G L+S P++Y
Sbjct: 187 GSVM-------IQRV------NGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILR 233
Query: 204 TEKDEFIILATDGVWDVISNKEAVEIVXXXXXXXXXXXXLVDWAVRSWKLKYPTSKNDDC 263
E+DEFIILA DG+WDV+SN+E E V + +W V + L + N
Sbjct: 234 AEEDEFIILAXDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTC-LHKGSRDNMSI 292
Query: 264 AVVCL 268
+VC
Sbjct: 293 VLVCF 297
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 16/137 (11%)
Query: 93 GTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKG 152
G+T+V V I + N GDSRAVL A+ L+VD KPD EAARI+ G
Sbjct: 126 GSTSVVAVVFPSHIFVANCGDSRAVLC-----RGKTALPLSVDHKPDREDEAARIEAAGG 180
Query: 153 RVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEKDEFIIL 212
+V ARV+ LAM+R+ GD LK +I P++ + ++D+ +IL
Sbjct: 181 KVIQWNG----ARVF------GVLAMSRSIGDRYLKP-SIIPDPEVTAVKRVKEDDCLIL 229
Query: 213 ATDGVWDVISNKEAVEI 229
A+DGVWDV++++EA E+
Sbjct: 230 ASDGVWDVMTDEEACEM 246
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 16/137 (11%)
Query: 93 GTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKG 152
G+T+V V I + N GDSRAVL + A+ L+VD KPD EAARI+ G
Sbjct: 123 GSTSVVAVVFPSHIFVANCGDSRAVLCRGK-----TALPLSVDHKPDREDEAARIEAAGG 177
Query: 153 RVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEKDEFIIL 212
+V ARV+ LAM+R+ GD LK +I P++ + ++D+ +IL
Sbjct: 178 KVIQWNG----ARVF------GVLAMSRSIGDRYLKP-SIIPDPEVTAVKRVKEDDCLIL 226
Query: 213 ATDGVWDVISNKEAVEI 229
A+DGVWDV++++EA E+
Sbjct: 227 ASDGVWDVMTDEEACEM 243
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 77/137 (56%), Gaps = 16/137 (11%)
Query: 93 GTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKG 152
G+T+V V I + N GDSRAVL A+ L+VD KPD EAARI+ G
Sbjct: 138 GSTSVVAVVFPSHIFVANCGDSRAVLC-----RGKTALPLSVDHKPDREDEAARIEAAGG 192
Query: 153 RVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEKDEFIIL 212
+V ARV+ LAM+R+ GD LK +I P++ + ++D+ +IL
Sbjct: 193 KVIQWNG----ARVF------GVLAMSRSIGDRYLKP-SIIPDPEVTAVKRVKEDDCLIL 241
Query: 213 ATDGVWDVISNKEAVEI 229
A+DGVWDV++++EA E+
Sbjct: 242 ASDGVWDVMTDEEACEM 258
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 90 FCSGTTA-VTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQ 148
SGTTA V L++ G ++V+ +VGDSRA+L + K ++LT+D P+ E RI+
Sbjct: 213 LTSGTTATVALLRDGIELVVASVGDSRAILCRKGK-----PMKLTIDHTPERKDEKERIK 267
Query: 149 QCKGRV-FALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEKD 207
+C G V + +P V + LAM R+ GD LK G+I+ P+ +L D
Sbjct: 268 KCGGFVAWNSLGQPHV---------NGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHAD 318
Query: 208 E-FIILATDGVWDVISNKEAVEIVXXXXXXXXXXXXLVDWAVRSWKLKYPTSKNDDCAVV 266
+ F++L TDG+ +++++E + V + + A+ +Y T N VV
Sbjct: 319 DSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAI-----QYGTEDNSTAVVV 373
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 22/178 (12%)
Query: 92 SGTTA-VTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQC 150
SGTTA V L++ G ++V+ +VGDSRA+L + K ++LT+D P+ E RI++C
Sbjct: 101 SGTTATVALLRDGIELVVASVGDSRAILCRKGK-----PMKLTIDHTPERKDEKERIKKC 155
Query: 151 KGRV-FALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEKDE- 208
G V + +P V + LAM R+ GD LK G+I+ P+ +L D+
Sbjct: 156 GGFVAWNSLGQPHV---------NGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDS 206
Query: 209 FIILATDGVWDVISNKEAVEIVXXXXXXXXXXXXLVDWAVRSWKLKYPTSKNDDCAVV 266
F++L TDG+ +++++E + V + + A+ +Y T N VV
Sbjct: 207 FLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAI-----QYGTEDNSTAVVV 259
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 16/137 (11%)
Query: 93 GTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKG 152
G+T+V V I + N GDSRAVL + + L+VD KPD EAARI+ G
Sbjct: 132 GSTSVVAVVFPTHIFVANCGDSRAVLCRGK-----TPLALSVDHKPDRDDEAARIEAAGG 186
Query: 153 RVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDIYYRRLTEKDEFIIL 212
+V ARV+ LAM+R+ GD LK +I P++ R ++D+ +IL
Sbjct: 187 KVIRWNG----ARVF------GVLAMSRSIGDRYLKP-SVIPDPEVTSVRRVKEDDCLIL 235
Query: 213 ATDGVWDVISNKEAVEI 229
A+DG+WDV++N+E ++
Sbjct: 236 ASDGLWDVMTNEEVCDL 252
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 25/147 (17%)
Query: 92 SGTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCK 151
SG TAV + G D+ + N GDSR V+ K A++++ D KP+ E RI++
Sbjct: 130 SGCTAVVALLHGKDLYVANAGDSRCVVCRNGK-----ALEMSFDHKPEDTVEYQRIEKAG 184
Query: 152 GRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLK--------DFGLISVPDIYYRRL 203
GRV L + GL ++RA GD K + + ++PDI +
Sbjct: 185 GRV------------TLDGRVNGGLNLSRAIGDHGYKMNKSLPAEEQMISALPDIEKITV 232
Query: 204 TEKDEFIILATDGVWDVISNKEAVEIV 230
+DEF++LA DG+W+ +++++ V+ V
Sbjct: 233 GPEDEFMVLACDGIWNFMTSEQVVQFV 259
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 72/148 (48%), Gaps = 27/148 (18%)
Query: 92 SGTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCK 151
SG+TAV ++ N GDSR +L K + T D KP P E RIQ
Sbjct: 125 SGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFF-----TQDHKPSNPLEKERIQNAG 179
Query: 152 GRVFALQDEPEVARVWLPNNDSPGLAMARAFGDF---CLKDFG----LIS-VPDIY-YRR 202
G V + RV + LA++RA GDF C+ G L+S P+++ R
Sbjct: 180 GSVM-------IQRV------NGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIER 226
Query: 203 LTEKDEFIILATDGVWDVISNKEAVEIV 230
E D+FIILA DG+WDV+ N+E + V
Sbjct: 227 SEEDDQFIILACDGIWDVMGNEELCDFV 254
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 72/148 (48%), Gaps = 27/148 (18%)
Query: 92 SGTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCK 151
SG+TAV ++ N GDSR +L K + T D KP P E RIQ
Sbjct: 125 SGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFF-----TQDHKPSNPLEKERIQNAG 179
Query: 152 GRVFALQDEPEVARVWLPNNDSPGLAMARAFGDF---CLKDFG----LIS-VPDIY-YRR 202
G V + RV + LA++RA GDF C+ G L+S P+++ R
Sbjct: 180 GSVM-------IQRV------NGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIER 226
Query: 203 LTEKDEFIILATDGVWDVISNKEAVEIV 230
E D+FIILA DG+WDV+ N+E + V
Sbjct: 227 SEEDDQFIILACDGIWDVMGNEELCDFV 254
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 41/172 (23%)
Query: 92 SGTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCK 151
SG TA G D+ + N GDSRA+L +E+D S AV L+ D RE R++
Sbjct: 199 SGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNEREVERLK--- 255
Query: 152 GRVFALQDEPEVARVWLPNNDSPGLAMA-RAFGDFCLK----------DFG--------- 191
L+ A+ + + GL M RAFGD K + G
Sbjct: 256 -----LEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEY 310
Query: 192 -------------LISVPDIYYRRLTEKDEFIILATDGVWDVISNKEAVEIV 230
L + P++ Y RL +D+F++LATDG+W+ + ++ V IV
Sbjct: 311 TKFIPPNYYTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIV 362
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 41/172 (23%)
Query: 92 SGTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCK 151
SG TA G D+ + N GDSRA+L +E+D S AV L+ D RE R++
Sbjct: 199 SGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELQRLK--- 255
Query: 152 GRVFALQDEPEVARVWLPNNDSPGLAMA-RAFGDFCLK----------DFG--------- 191
L+ A+ + + GL M RAFGD K + G
Sbjct: 256 -----LEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEY 310
Query: 192 -------------LISVPDIYYRRLTEKDEFIILATDGVWDVISNKEAVEIV 230
L + P++ Y RL +D+F++LATDG+W+ + ++ V IV
Sbjct: 311 TKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIV 362
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
pdb|2ISN|B Chain B, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
Length = 364
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 22/97 (22%)
Query: 110 NVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARIQQCKGRVFALQDEPEVARVWLP 169
N+GDSRA L D L +L+ D KP+ P EA+RI++ G V D P V V
Sbjct: 179 NIGDSRATLI--HSDGGLT--RLSKDHKPNHPTEASRIEKAGGSVETF-DVPRVDGV--- 230
Query: 170 NNDSPGLAMARAFGDFCLK--------DFGLISVPDI 198
LA++RAFGD K + +I+VPD+
Sbjct: 231 ------LALSRAFGDSDFKXNPNLPPEEQKVIAVPDV 261
>pdb|2IRM|A Chain A, Crystal Structure Of Mitogen-Activated Protein Kinase
Kinase Kinase 7 Interacting Protein 1 From Anopheles
Gambiae
Length = 358
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 93 GTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPREAARI 147
G++AV + + +GN+G+ RA+L ++ ++L QL+VD EAAR+
Sbjct: 154 GSSAVLALIHRSHLYLGNIGNCRALLCKTDEHDTLTVTQLSVDHNLLNAEEAARL 208
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 84 HPAIDCFCSGTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPRE 143
+ + DCF T + L+ Q DI+ D+ AVLAT A+++ DL P L E
Sbjct: 100 YLSCDCF----TNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQL-YE 154
Query: 144 AARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMA 179
AA CK + +P +A + SPGL A
Sbjct: 155 AASTTICKALI-----QPNIALL------SPGLICA 179
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 84 HPAIDCFCSGTTAVTLVKQGPDIVIGNVGDSRAVLATREKDNSLVAVQLTVDLKPDLPRE 143
+ + DCF T + L+ Q DI+ D+ AVLAT A+++ DL P L E
Sbjct: 121 YLSCDCF----TNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQL-YE 175
Query: 144 AARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMA 179
AA CK + +P +A + SPGL A
Sbjct: 176 AASTTICKALI-----QPNIALL------SPGLICA 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,267,074
Number of Sequences: 62578
Number of extensions: 385222
Number of successful extensions: 1076
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1019
Number of HSP's gapped (non-prelim): 25
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)