BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018317
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESR 169
+ D+YEILGV R + ED++K+YR+L+LK HPDKN APGA EAFKA+ A+ LSN E R
Sbjct: 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKR 65
Query: 170 KKYDITGS 177
K+YD GS
Sbjct: 66 KQYDQFGS 73
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 112 DFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKK 171
D Y +LGV R+ + D++K+Y+KL+ + HPDKNK PGAE+ F +SKA++ LSN+E R
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 172 YDITGS 177
YD GS
Sbjct: 78 YDHYGS 83
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 49/68 (72%)
Query: 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRK 170
KD+Y+ LG+ R + E+++++YR+ +L+ HPDKNK PGAEE FK +++A+ LS+ R+
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 171 KYDITGSD 178
+D G +
Sbjct: 63 IFDRYGEE 70
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 47/64 (73%)
Query: 113 FYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKY 172
+Y+ILGV +S + ++K++ KL++K HPDKNK+P AE F+ +++A++ LS+ RK+Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 173 DITG 176
D G
Sbjct: 69 DTLG 72
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 112 DFYEILGVERSCTVEDVRKSYRKLSLKVHPDKN--KAPGAEEAFKAVSKAFQCLSNDESR 169
++YE+LGV+ S + ED++K+YRKL+L+ HPDKN AE+ FK VS+A++ LS+ + R
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 170 KKYDITGSD 178
YD G D
Sbjct: 70 SLYDRAGCD 78
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 50/68 (73%)
Query: 96 YTEEQIAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKA 155
+T+EQ +R+I+ +KD +++LGV+ + ++V K+YRKL++ +HPDK APG+E+AFKA
Sbjct: 12 FTKEQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKA 71
Query: 156 VSKAFQCL 163
V A L
Sbjct: 72 VVNARTAL 79
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
Query: 113 FYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKY 172
+Y++LGV+ + T E+++K+YRKL+LK HPDKN P E FK +S+A++ LS+ + R+ Y
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKN--PNEGEKFKQISQAYEVLSDAKKRELY 65
Query: 173 DITG 176
D G
Sbjct: 66 DKGG 69
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 112 DFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK-APGAEEAFKAVSKAFQCLSNDESRK 170
D+Y+ILGV R+ + ++++K+Y +L+ K HPD NK P A+E F +++A++ LS++ RK
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 171 KYDITGS 177
+YD GS
Sbjct: 68 QYDAYGS 74
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA-PGAEEAFKAVSKAFQCLSNDESR 169
+D+YEILGV ++ ++RK+Y++L++K HPD+N+ AE FK + +A++ L++ + R
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 170 KKYDITG 176
YD G
Sbjct: 63 AAYDQYG 69
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 109 KTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDES 168
K +Y++LGV+ + +++K+YRK++LK HPDKN P E FK +S+A++ LS+++
Sbjct: 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKK 63
Query: 169 RKKYDITGSD 178
R+ YD G +
Sbjct: 64 RQIYDQGGEE 73
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 112 DFYEILGVERSCTVEDVRKSYRKLSLKVHPDKN--KAPGAEEAFKAVSKAFQCLSNDESR 169
D+YE+L V R + E ++K+YRKL+LK HPDKN AE FK V++A++ LS+ + R
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 170 KKYDITGS 177
YD GS
Sbjct: 70 DIYDRYGS 77
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKN-KAPGAEEAFKAVSKAFQCLSNDESR 169
++FY +LGV ++ + ++R++++KL+LK+HPDKN P A F +++A++ L +++ R
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 170 KKYDITG 176
KKYD G
Sbjct: 81 KKYDKYG 87
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPG-AEEAFKAVSKAFQCLSNDESR 169
+D+YEILGV ++ ++RK+Y++L++K HPD+N+ AE FK + +A++ L++ + R
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 170 KKYDITG 176
YD G
Sbjct: 63 AAYDQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPG-AEEAFKAVSKAFQCLSNDESR 169
+D+YEILGV ++ ++RK+Y++L++K HPD+N+ AE FK + +A++ L++ + R
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 170 KKYDITG 176
YD G
Sbjct: 63 AAYDQYG 69
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 113 FYEILGVERSCTVEDVRKSYRKLSLKVHPDKN-KAPGAEEAFKAVSKAFQCLSNDESRKK 171
Y +LG++++ T +D++KSYRKL+LK HPDKN P A + FK ++ A L++ R
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNI 78
Query: 172 YDITGS 177
YD GS
Sbjct: 79 YDKYGS 84
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKN-KAPGAEEAFKAVSKAFQCLSNDES 168
++FY +LGV ++ + ++R++++KL+LK+HPDKN P A F +++A++ L +++
Sbjct: 1 IQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 60
Query: 169 RKKYDITG 176
RKKYD G
Sbjct: 61 RKKYDKYG 68
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 46/63 (73%)
Query: 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRK 170
KD+Y I+GV+ + ++ ++ +YR+L+ K HPD +K P AE FK V++A++ LS+++ R
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA 64
Query: 171 KYD 173
+YD
Sbjct: 65 EYD 67
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 113 FYEILGVERSCTVEDVRKSYRKLSLKVHPDKN--KAPGAEEAFKAVSKAFQCLSNDESRK 170
+YEIL V RS + +D++K+YR+ +L+ HPDKN AE+ FK V++A++ LS+ R+
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 171 KYDITGSDEPVYQPRTHTRAARGFNG 196
YD G + +RA G G
Sbjct: 64 IYDRYGREGLTGTGTGPSRAEAGSGG 89
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 44/63 (69%)
Query: 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRK 170
KD+Y ILGV+ + ++ ++ +YR+L+ K HPD +K AE FK +++A++ L +++ R
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRA 87
Query: 171 KYD 173
+YD
Sbjct: 88 EYD 90
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 107 IKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSND 166
+K+TK Y++LGV S ++++K YRK +LK HPD K G E FK +S+AF+ L++
Sbjct: 5 VKETK-LYDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKFKEISEAFEILNDP 61
Query: 167 ESRKKYDITG 176
+ R+ YD G
Sbjct: 62 QKREIYDQYG 71
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKN-KAPGAEEAFKAVSKAFQCLSNDES 168
T+D+Y +LG + +VE + ++ +L+ HPDK+ + P A E F+ + KA + L+N+ES
Sbjct: 19 TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEES 78
Query: 169 RKKYD 173
R +YD
Sbjct: 79 RARYD 83
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 51.6 bits (122), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA--PGAE-----EAFKAVSKAFQCL 163
KD+Y ILG + S + D+++ Y+KL L HPDK A P + F + +A++ L
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
Query: 164 SNDESRKKYDITGS 177
N+E++KKYD+ S
Sbjct: 76 GNEETKKKYDLQRS 89
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 104 VRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK----APGAEEA---FKAV 156
V Q+ K KD+Y ILG + S + D+++ Y+KL L HPDK A EE F +
Sbjct: 4 VEQMPK-KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEI 62
Query: 157 SKAFQCLSNDESRKKYDI 174
+A++ L N+E++++YD+
Sbjct: 63 DQAWKILGNEETKREYDL 80
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 52/75 (69%), Gaps = 5/75 (6%)
Query: 103 IVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPD----KNKAPGAEEAFKAVSK 158
+++Q +K +D+Y+ILGV+R+ +++ K+YRKL+L+ HPD + + AE+ F ++
Sbjct: 375 LLKQSQK-RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA 433
Query: 159 AFQCLSNDESRKKYD 173
A + LS+ E RKK+D
Sbjct: 434 AKEVLSDPEMRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 52/75 (69%), Gaps = 5/75 (6%)
Query: 103 IVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPD----KNKAPGAEEAFKAVSK 158
+++Q +K +D+Y+ILGV+R+ +++ K+YRKL+L+ HPD + + AE+ F ++
Sbjct: 375 LLKQSQK-RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA 433
Query: 159 AFQCLSNDESRKKYD 173
A + LS+ E RKK+D
Sbjct: 434 AKEVLSDPEXRKKFD 448
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 113 FYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPG-AEEAFKAVSKAFQCLSNDESRKK 171
Y++LGV + T ++ +Y + HPD+N A E F +S+A+ L + R+K
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78
Query: 172 YD 173
YD
Sbjct: 79 YD 80
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 114 YEILGVERS-CTVEDVRKSYRKLSLKVHPD--KNKAPG--AEEAFKAVSKAFQCLSNDES 168
Y++L V R + + K+YR L+ K HPD KNK AEE F+ ++ A++ L +DE+
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 169 RKKYD 173
+ YD
Sbjct: 78 KTNYD 82
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 114 YEILGVERSCTVEDVRKSYRKLSLKVHPDK 143
++ +G+ T E V+K YRK L VHPDK
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDK 149
>pdb|2FKN|A Chain A, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|B Chain B, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|C Chain C, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|D Chain D, Crystal Structure Of Urocanase From Bacillus Subtilis
Length = 552
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 114 YEILGVERSCTVEDVRKSY------RKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDE 167
E LG E+ + +R + + L V+ KA +AF A+ + + L NDE
Sbjct: 16 LECLGWEQEAVLRMLRNNLDPEVAEKPEDLIVYGGIGKAARDWDAFHAIEHSLKTLKNDE 75
Query: 168 SRKKYDITGSDEPVYQPRTHTRAAR 192
+ + S +PV RTH +A R
Sbjct: 76 TL----LVQSGKPVGMFRTHPQAPR 96
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 114 YEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAV 156
++ +G+ T E V+K YRK L VHPDK E+ K +
Sbjct: 52 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMI 94
>pdb|1A3O|A Chain A, Artificial Mutant (Alpha Y42h) Of Deoxy Hemoglobin
pdb|1A3O|C Chain C, Artificial Mutant (Alpha Y42h) Of Deoxy Hemoglobin
Length = 141
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 185 RTHTRAARGFNGFYDSDIDAEEIFRNFFFGGMPPARTQFRHFNFGQGVA 233
+T+ +AA G G + + AE + R F P +T F HF+ G A
Sbjct: 7 KTNVKAAWGKVGAHAGEYGAEALERMFL--SFPTTKTHFPHFDLSHGSA 53
>pdb|2DHB|A Chain A, Three Dimensional Fourier Synthesis Of Horse
Deoxyhaemoglobin At 2.8 Angstroms Resolution
Length = 141
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 185 RTHTRAARGFNGFYDSDIDAEEIFRNFFFGGMPPARTQFRHFNFGQGVATGTAD-RNGSD 243
+T+ +AA G + + AE + R F G P +T F HF+ G A A + +D
Sbjct: 7 KTNVKAAWSKVGGHAGEYGAEALERMFL--GFPTTKTYFPHFDLSHGSAQVKAHGKKVAD 64
Query: 244 GFNL 247
G L
Sbjct: 65 GLTL 68
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 124 TVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAV 156
T E V+K YRK L VHPDK E+ K +
Sbjct: 49 TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXI 81
>pdb|3GDJ|A Chain A, Crystal Structure Determination Of Camel(Camelus
Dromedarius)hemoglobin At 2 Angstrom Resolution
pdb|3GDJ|C Chain C, Crystal Structure Determination Of Camel(Camelus
Dromedarius)hemoglobin At 2 Angstrom Resolution
Length = 141
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 185 RTHTRAARGFNGFYDSDIDAEEIFRNFFFGGMPPARTQFRHFNFGQGVA 233
+T+ + A G G + ++ AE + R F G P +T F HF+ G A
Sbjct: 7 KTNVKTAFGKIGGHAAEYGAEALERMFL--GFPTTKTYFPHFDLSHGSA 53
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
Length = 106
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 128 VRKSYRKLSLKVHPDKNKAPGAEEAFKAVS-KAFQCL 163
VRKSY++ L +HPDK + GA K ++ K F+ L
Sbjct: 57 VRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELL 93
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 134 KLSLKVHPDKNKAP---GAEEAFKAVSK-AFQCLSNDESRKKYDITGSDEPVYQPRTHT 188
K++L VH DKN+ P GA E F + + F+ + +S + +T +E + R+H+
Sbjct: 157 KVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNE--HSSRSHS 213
>pdb|1IBE|A Chain A, Deoxy-Haemoglobin Trapped In The High-Affinity (R) State
Length = 141
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 185 RTHTRAARGFNGFYDSDIDAEEIFRNFFFGGMPPARTQFRHFNFGQGVA 233
+T+ +AA G + + AE + R F G P +T F HF+ G A
Sbjct: 7 KTNVKAAWSKVGGHAGEFGAEALERMFL--GFPTTKTYFPHFDLSHGSA 53
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 174
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 113 FYEILGVERSC--TVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQ 161
++LG+ERS + +RK+Y K + HPDK G EE K ++ ++
Sbjct: 13 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG---GDEEKMKKMNTLYK 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,084,218
Number of Sequences: 62578
Number of extensions: 382162
Number of successful extensions: 800
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 43
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)