Query 018317
Match_columns 358
No_of_seqs 350 out of 2451
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:59:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 4.1E-28 8.9E-33 237.7 10.3 101 109-216 2-103 (371)
2 PF09320 DUF1977: Domain of un 99.9 1.6E-25 3.4E-30 185.8 8.2 89 262-353 2-107 (107)
3 KOG0713 Molecular chaperone (D 99.9 6.9E-24 1.5E-28 203.5 7.7 76 106-181 11-87 (336)
4 KOG0712 Molecular chaperone (D 99.9 9.8E-23 2.1E-27 197.4 8.1 70 110-181 3-72 (337)
5 PRK14296 chaperone protein Dna 99.9 2E-22 4.3E-27 200.6 9.6 71 110-180 3-73 (372)
6 KOG0624 dsRNA-activated protei 99.9 1.2E-21 2.6E-26 188.5 11.7 77 105-182 388-468 (504)
7 PRK14288 chaperone protein Dna 99.9 6.8E-22 1.5E-26 196.6 9.3 99 110-215 2-101 (369)
8 PRK14286 chaperone protein Dna 99.9 1.2E-21 2.6E-26 195.0 9.8 104 110-215 3-107 (372)
9 PRK14276 chaperone protein Dna 99.8 4E-21 8.8E-26 191.8 10.6 103 110-215 3-107 (380)
10 PRK14299 chaperone protein Dna 99.8 5.3E-21 1.1E-25 184.6 10.8 105 110-214 3-108 (291)
11 PRK14287 chaperone protein Dna 99.8 3.8E-21 8.2E-26 191.4 9.8 97 110-215 3-99 (371)
12 PRK14280 chaperone protein Dna 99.8 7.4E-21 1.6E-25 189.7 10.2 101 111-215 4-104 (376)
13 PRK14285 chaperone protein Dna 99.8 7.8E-21 1.7E-25 188.8 9.9 104 111-215 3-107 (365)
14 PRK14298 chaperone protein Dna 99.8 9.5E-21 2.1E-25 188.9 9.4 100 110-215 4-103 (377)
15 PRK14278 chaperone protein Dna 99.8 1.3E-20 2.8E-25 188.0 9.2 96 111-215 3-99 (378)
16 PRK14297 chaperone protein Dna 99.8 1.6E-20 3.5E-25 187.5 9.7 103 110-215 3-107 (380)
17 PRK14294 chaperone protein Dna 99.8 2.1E-20 4.4E-25 185.9 9.3 97 110-213 3-101 (366)
18 PRK14282 chaperone protein Dna 99.8 2.2E-20 4.7E-25 185.9 9.3 71 110-180 3-75 (369)
19 PTZ00037 DnaJ_C chaperone prot 99.8 1.9E-20 4.2E-25 188.7 8.1 88 110-215 27-114 (421)
20 PRK14277 chaperone protein Dna 99.8 5.4E-20 1.2E-24 184.0 10.3 72 110-181 4-76 (386)
21 PRK14291 chaperone protein Dna 99.8 8.3E-20 1.8E-24 182.5 10.9 100 110-212 2-101 (382)
22 PRK14279 chaperone protein Dna 99.8 6.5E-20 1.4E-24 183.8 10.1 69 110-178 8-77 (392)
23 PRK14283 chaperone protein Dna 99.8 6.1E-20 1.3E-24 183.3 8.8 71 110-180 4-74 (378)
24 PRK14292 chaperone protein Dna 99.8 1.1E-19 2.3E-24 181.1 10.4 97 111-215 2-98 (371)
25 PRK14301 chaperone protein Dna 99.8 9.7E-20 2.1E-24 181.5 9.4 71 110-180 3-74 (373)
26 TIGR02349 DnaJ_bact chaperone 99.8 1.9E-19 4.1E-24 178.2 10.2 101 112-215 1-102 (354)
27 PRK14281 chaperone protein Dna 99.8 2.9E-19 6.3E-24 179.4 9.8 71 111-181 3-74 (397)
28 PRK14284 chaperone protein Dna 99.8 2.4E-19 5.2E-24 179.7 8.6 70 111-180 1-71 (391)
29 PRK10767 chaperone protein Dna 99.8 3.9E-19 8.4E-24 177.1 9.6 99 110-214 3-103 (371)
30 PRK14290 chaperone protein Dna 99.8 6E-19 1.3E-23 175.4 10.2 98 111-214 3-102 (365)
31 PRK14295 chaperone protein Dna 99.8 9.3E-19 2E-23 175.3 9.6 71 110-180 8-83 (389)
32 KOG0550 Molecular chaperone (D 99.8 2.4E-18 5.2E-23 168.9 11.2 151 8-175 287-439 (486)
33 PRK14293 chaperone protein Dna 99.8 1.6E-18 3.6E-23 172.7 9.7 95 111-214 3-97 (374)
34 PRK10266 curved DNA-binding pr 99.8 2.2E-18 4.9E-23 167.5 10.4 101 111-214 4-104 (306)
35 PRK14300 chaperone protein Dna 99.8 1.5E-18 3.2E-23 172.9 9.2 70 111-180 3-72 (372)
36 PRK14289 chaperone protein Dna 99.7 2.7E-18 5.8E-23 171.9 9.1 71 110-180 4-75 (386)
37 PTZ00341 Ring-infected erythro 99.7 4.9E-18 1.1E-22 180.8 8.5 92 109-217 571-662 (1136)
38 KOG0715 Molecular chaperone (D 99.7 1.6E-17 3.5E-22 159.9 7.3 87 111-214 43-129 (288)
39 KOG0691 Molecular chaperone (D 99.7 1.5E-17 3.2E-22 159.8 6.5 92 110-217 4-96 (296)
40 KOG0716 Molecular chaperone (D 99.7 1.4E-17 3E-22 155.7 5.9 71 110-180 30-101 (279)
41 PF00226 DnaJ: DnaJ domain; I 99.7 3E-17 6.5E-22 123.1 5.0 62 112-173 1-64 (64)
42 KOG0717 Molecular chaperone (D 99.7 6.8E-17 1.5E-21 160.1 5.5 72 110-181 7-80 (508)
43 KOG0718 Molecular chaperone (D 99.6 1.5E-16 3.2E-21 157.8 6.1 72 110-181 8-83 (546)
44 PHA03102 Small T antigen; Revi 99.6 4.4E-16 9.6E-21 136.4 8.1 87 111-217 5-93 (153)
45 KOG0719 Molecular chaperone (D 99.6 2.7E-16 5.8E-21 144.2 6.6 89 110-213 13-104 (264)
46 TIGR03835 termin_org_DnaJ term 99.6 2.1E-15 4.6E-20 157.7 9.0 70 111-180 2-71 (871)
47 smart00271 DnaJ DnaJ molecular 99.6 2.6E-15 5.5E-20 110.8 5.6 57 111-167 1-59 (60)
48 cd06257 DnaJ DnaJ domain or J- 99.6 7E-15 1.5E-19 106.5 5.9 54 112-165 1-55 (55)
49 KOG0721 Molecular chaperone (D 99.5 1.5E-14 3.3E-19 131.5 7.0 70 109-178 97-167 (230)
50 COG2214 CbpA DnaJ-class molecu 99.5 2.9E-14 6.4E-19 128.5 6.6 68 109-176 4-73 (237)
51 KOG0714 Molecular chaperone (D 99.5 5.6E-14 1.2E-18 132.7 8.0 102 110-213 2-105 (306)
52 KOG0720 Molecular chaperone (D 99.5 4.5E-14 9.8E-19 140.2 6.2 72 105-176 229-300 (490)
53 PRK05014 hscB co-chaperone Hsc 99.4 9.8E-13 2.1E-17 117.9 7.0 65 111-175 1-73 (171)
54 PRK01356 hscB co-chaperone Hsc 99.3 1.2E-12 2.5E-17 116.8 6.3 66 111-176 2-73 (166)
55 KOG0722 Molecular chaperone (D 99.3 9.6E-13 2.1E-17 122.2 3.7 70 109-178 31-100 (329)
56 PRK00294 hscB co-chaperone Hsc 99.3 5E-12 1.1E-16 113.4 7.1 67 109-175 2-76 (173)
57 PRK03578 hscB co-chaperone Hsc 99.3 7.6E-12 1.6E-16 112.6 7.1 65 110-174 5-77 (176)
58 PTZ00100 DnaJ chaperone protei 99.2 3.7E-11 8E-16 100.6 5.7 51 111-164 65-115 (116)
59 PHA02624 large T antigen; Prov 99.2 7.5E-11 1.6E-15 122.6 8.3 61 110-173 10-72 (647)
60 PRK09430 djlA Dna-J like membr 99.1 6.7E-11 1.5E-15 113.1 4.6 55 111-165 200-262 (267)
61 COG5407 SEC63 Preprotein trans 99.0 5.1E-10 1.1E-14 111.3 4.9 70 109-178 96-171 (610)
62 PRK01773 hscB co-chaperone Hsc 98.9 1.9E-09 4.1E-14 96.8 7.0 64 111-174 2-73 (173)
63 KOG1150 Predicted molecular ch 98.9 1.9E-09 4.2E-14 97.2 5.6 64 110-173 52-117 (250)
64 TIGR00714 hscB Fe-S protein as 98.8 8.3E-09 1.8E-13 91.3 6.2 54 123-176 3-62 (157)
65 COG5269 ZUO1 Ribosome-associat 98.8 1.5E-08 3.2E-13 95.4 7.5 72 108-179 40-117 (379)
66 KOG1789 Endocytosis protein RM 98.1 3E-06 6.4E-11 91.8 5.4 54 110-165 1280-1337(2235)
67 KOG0568 Molecular chaperone (D 98.0 6.8E-06 1.5E-10 76.1 5.2 57 110-166 46-103 (342)
68 KOG0723 Molecular chaperone (D 97.6 0.0001 2.2E-09 60.5 5.3 49 115-166 60-108 (112)
69 KOG0714 Molecular chaperone (D 97.6 1E-06 2.2E-11 83.1 -7.6 292 5-329 2-305 (306)
70 KOG3192 Mitochondrial J-type c 96.9 0.00093 2E-08 58.6 4.0 68 107-174 4-79 (168)
71 PF07719 TPR_2: Tetratricopept 96.6 0.0054 1.2E-07 39.0 4.9 33 8-40 1-33 (34)
72 PF00515 TPR_1: Tetratricopept 96.5 0.0069 1.5E-07 38.8 4.9 33 8-40 1-33 (34)
73 COG1076 DjlA DnaJ-domain-conta 96.2 0.0051 1.1E-07 55.3 3.9 63 101-163 103-173 (174)
74 KOG0431 Auxilin-like protein a 95.6 0.018 3.9E-07 59.3 5.6 43 121-163 398-448 (453)
75 PF13181 TPR_8: Tetratricopept 94.8 0.055 1.2E-06 34.3 4.1 33 8-40 1-33 (34)
76 PF13428 TPR_14: Tetratricopep 94.8 0.074 1.6E-06 36.4 4.9 31 11-41 4-34 (44)
77 PF13414 TPR_11: TPR repeat; P 94.5 0.046 1E-06 40.3 3.5 34 7-40 2-35 (69)
78 COG1076 DjlA DnaJ-domain-conta 94.0 0.033 7.2E-07 50.0 2.3 66 112-177 2-75 (174)
79 PF13414 TPR_11: TPR repeat; P 93.6 0.056 1.2E-06 39.8 2.5 35 5-39 34-69 (69)
80 PF14559 TPR_19: Tetratricopep 92.6 0.092 2E-06 38.5 2.3 40 10-49 27-67 (68)
81 PF13176 TPR_7: Tetratricopept 92.5 0.25 5.3E-06 32.3 4.1 30 11-40 2-31 (36)
82 TIGR03504 FimV_Cterm FimV C-te 92.2 0.21 4.6E-06 34.8 3.6 38 12-49 3-43 (44)
83 PF03656 Pam16: Pam16; InterP 91.9 0.35 7.6E-06 41.4 5.4 51 114-167 61-111 (127)
84 smart00028 TPR Tetratricopepti 91.8 0.31 6.7E-06 28.4 3.7 30 11-40 4-33 (34)
85 PF13174 TPR_6: Tetratricopept 91.1 0.42 9.1E-06 29.6 3.9 30 11-40 3-32 (33)
86 PF14853 Fis1_TPR_C: Fis1 C-te 91.0 0.64 1.4E-05 33.7 5.2 41 11-51 4-45 (53)
87 PF13432 TPR_16: Tetratricopep 88.4 1.2 2.6E-05 32.2 5.1 27 14-40 3-29 (65)
88 KOG0553 TPR repeat-containing 88.0 0.72 1.6E-05 44.9 4.6 39 4-42 77-115 (304)
89 KOG3824 Huntingtin interacting 87.2 1.4 3E-05 43.4 6.0 39 3-41 111-149 (472)
90 PF13371 TPR_9: Tetratricopept 86.9 1.1 2.5E-05 33.0 4.3 34 9-42 30-63 (73)
91 PF13432 TPR_16: Tetratricopep 85.8 0.98 2.1E-05 32.7 3.4 38 3-40 11-63 (65)
92 PF13374 TPR_10: Tetratricopep 83.1 3.1 6.7E-05 26.8 4.6 32 9-40 3-34 (42)
93 cd02679 MIT_spastin MIT: domai 81.1 2.9 6.4E-05 32.8 4.4 35 3-37 3-37 (79)
94 PF14559 TPR_19: Tetratricopep 78.8 3.1 6.7E-05 30.1 3.8 24 18-41 1-24 (68)
95 KOG0724 Zuotin and related mol 78.2 2 4.3E-05 42.3 3.3 54 123-176 4-62 (335)
96 KOG0543 FKBP-type peptidyl-pro 78.0 3.3 7.1E-05 41.9 4.7 40 12-52 261-300 (397)
97 PF07219 HemY_N: HemY protein 77.9 6.1 0.00013 32.4 5.6 43 5-47 56-98 (108)
98 KOG0624 dsRNA-activated protei 77.6 10 0.00022 38.1 7.9 49 3-52 33-81 (504)
99 PLN03088 SGT1, suppressor of 77.4 4.7 0.0001 40.1 5.7 39 9-48 3-41 (356)
100 cd00189 TPR Tetratricopeptide 77.1 4 8.6E-05 29.1 4.0 31 11-41 3-33 (100)
101 PF14863 Alkyl_sulf_dimr: Alky 77.0 5.6 0.00012 34.7 5.3 43 8-50 70-113 (141)
102 PF13371 TPR_9: Tetratricopept 76.6 2.9 6.4E-05 30.7 3.1 27 15-41 2-28 (73)
103 KOG4234 TPR repeat-containing 76.4 4.4 9.6E-05 37.8 4.7 39 4-42 91-129 (271)
104 KOG4234 TPR repeat-containing 76.0 5.6 0.00012 37.2 5.2 46 6-52 132-177 (271)
105 PF04212 MIT: MIT (microtubule 75.1 7.6 0.00016 29.0 5.0 32 6-37 3-34 (69)
106 PF13424 TPR_12: Tetratricopep 74.2 4.1 8.9E-05 30.4 3.4 31 8-38 46-76 (78)
107 PF13424 TPR_12: Tetratricopep 74.0 7.8 0.00017 28.9 4.9 32 7-38 4-35 (78)
108 KOG0543 FKBP-type peptidyl-pro 72.0 7.4 0.00016 39.5 5.5 32 11-42 294-325 (397)
109 PRK10370 formate-dependent nit 71.8 7.6 0.00017 35.3 5.2 38 4-41 69-106 (198)
110 PF13446 RPT: A repeated domai 70.8 5.7 0.00012 29.2 3.4 25 113-137 7-31 (62)
111 TIGR02552 LcrH_SycD type III s 69.7 9.2 0.0002 31.3 4.9 29 13-41 90-118 (135)
112 COG3063 PilF Tfp pilus assembl 69.6 8 0.00017 36.7 4.8 34 8-41 35-68 (250)
113 COG1516 FliS Flagellin-specifi 68.8 9.4 0.0002 33.0 4.7 34 6-39 29-62 (132)
114 PRK05685 fliS flagellar protei 68.5 10 0.00022 32.5 4.9 40 6-50 33-72 (132)
115 PF02064 MAS20: MAS20 protein 68.5 15 0.00031 31.3 5.8 41 10-52 65-105 (121)
116 PF10516 SHNi-TPR: SHNi-TPR; 67.7 8.9 0.00019 25.8 3.5 30 9-38 2-31 (38)
117 KOG0547 Translocase of outer m 65.8 8 0.00017 40.4 4.3 35 6-40 113-147 (606)
118 PF11817 Foie-gras_1: Foie gra 65.8 13 0.00028 35.0 5.5 38 5-42 175-212 (247)
119 TIGR02552 LcrH_SycD type III s 64.1 15 0.00033 30.0 5.1 38 4-41 13-50 (135)
120 PF13429 TPR_15: Tetratricopep 63.4 8.8 0.00019 36.1 3.9 36 6-41 144-179 (280)
121 PF03704 BTAD: Bacterial trans 63.1 9.8 0.00021 32.1 3.8 32 11-42 65-96 (146)
122 PF02561 FliS: Flagellar prote 62.9 12 0.00027 31.2 4.3 32 6-37 27-58 (122)
123 cd00189 TPR Tetratricopeptide 62.5 10 0.00023 26.8 3.4 30 10-39 36-65 (100)
124 PLN03098 LPA1 LOW PSII ACCUMUL 62.4 10 0.00022 39.2 4.4 38 5-42 72-109 (453)
125 TIGR00208 fliS flagellar biosy 62.2 16 0.00034 31.0 4.9 42 5-51 28-69 (124)
126 TIGR02795 tol_pal_ybgF tol-pal 61.7 13 0.00028 29.2 4.1 33 9-41 3-35 (119)
127 PLN03088 SGT1, suppressor of 61.6 14 0.0003 36.7 5.2 41 11-51 73-114 (356)
128 TIGR02795 tol_pal_ybgF tol-pal 60.6 17 0.00036 28.6 4.6 31 11-41 42-72 (119)
129 PRK10370 formate-dependent nit 60.6 18 0.00038 32.9 5.2 39 12-50 148-187 (198)
130 KOG0547 Translocase of outer m 60.5 15 0.00031 38.6 5.0 48 4-52 130-192 (606)
131 PF12895 Apc3: Anaphase-promot 59.7 6.8 0.00015 29.9 2.0 34 7-41 24-57 (84)
132 PF13525 YfiO: Outer membrane 59.0 26 0.00056 31.7 6.1 36 7-42 4-39 (203)
133 PRK02603 photosystem I assembl 58.5 19 0.00042 31.4 5.0 31 10-40 74-104 (172)
134 TIGR00990 3a0801s09 mitochondr 58.4 20 0.00043 38.1 5.9 33 8-40 127-159 (615)
135 PRK15359 type III secretion sy 58.2 13 0.00028 31.8 3.7 32 9-40 59-90 (144)
136 KOG0553 TPR repeat-containing 57.9 18 0.00039 35.4 5.0 42 11-52 152-194 (304)
137 smart00745 MIT Microtubule Int 57.3 21 0.00046 27.0 4.4 34 4-37 4-37 (77)
138 PHA02537 M terminase endonucle 57.2 19 0.00041 34.0 4.9 34 20-53 190-223 (230)
139 PRK11189 lipoprotein NlpI; Pro 56.8 23 0.00051 34.0 5.7 37 9-45 237-273 (296)
140 cd02680 MIT_calpain7_2 MIT: do 56.6 20 0.00043 27.9 4.1 36 5-40 3-38 (75)
141 PRK10747 putative protoheme IX 55.9 25 0.00054 35.3 5.9 41 2-42 97-152 (398)
142 cd02684 MIT_2 MIT: domain cont 54.6 24 0.00052 27.2 4.3 35 4-38 2-36 (75)
143 cd02681 MIT_calpain7_1 MIT: do 54.6 25 0.00053 27.4 4.4 33 6-38 4-36 (76)
144 PF13512 TPR_18: Tetratricopep 54.5 21 0.00046 31.2 4.4 30 11-40 13-42 (142)
145 TIGR00985 3a0801s04tom mitocho 54.4 31 0.00067 30.4 5.4 41 10-52 92-133 (148)
146 PRK15359 type III secretion sy 53.3 18 0.00038 30.9 3.8 31 11-41 27-57 (144)
147 PF14346 DUF4398: Domain of un 52.7 30 0.00065 27.9 4.9 32 6-37 43-74 (103)
148 PF11833 DUF3353: Protein of u 52.2 25 0.00055 32.2 4.7 39 120-165 1-39 (194)
149 PF14561 TPR_20: Tetratricopep 52.1 44 0.00095 26.6 5.6 48 4-51 18-69 (90)
150 PF07721 TPR_4: Tetratricopept 51.7 20 0.00044 21.4 2.8 22 11-32 4-25 (26)
151 CHL00033 ycf3 photosystem I as 51.1 30 0.00066 29.9 5.0 34 6-39 33-66 (168)
152 PF09976 TPR_21: Tetratricopep 50.9 37 0.0008 28.7 5.4 36 8-43 48-83 (145)
153 cd02682 MIT_AAA_Arch MIT: doma 50.7 37 0.00081 26.4 4.8 37 6-42 4-47 (75)
154 cd02683 MIT_1 MIT: domain cont 49.8 30 0.00064 26.8 4.2 32 6-37 4-35 (77)
155 cd02656 MIT MIT: domain contai 49.3 34 0.00074 25.9 4.4 32 6-37 4-35 (75)
156 PF14687 DUF4460: Domain of un 48.7 29 0.00062 29.0 4.2 46 121-166 4-54 (112)
157 CHL00033 ycf3 photosystem I as 48.4 39 0.00085 29.1 5.3 32 10-41 74-105 (168)
158 TIGR02521 type_IV_pilW type IV 48.0 36 0.00078 29.3 5.0 35 7-41 30-64 (234)
159 COG5552 Uncharacterized conser 47.2 71 0.0015 24.9 5.7 49 110-158 2-50 (88)
160 PF10938 YfdX: YfdX protein; 47.2 31 0.00068 30.3 4.4 34 7-40 1-34 (155)
161 KOG0376 Serine-threonine phosp 46.5 19 0.00041 37.4 3.3 34 7-40 3-36 (476)
162 PRK10747 putative protoheme IX 46.1 26 0.00057 35.2 4.3 44 8-51 328-371 (398)
163 cd02678 MIT_VPS4 MIT: domain c 45.0 43 0.00092 25.5 4.4 32 6-37 4-35 (75)
164 PRK10866 outer membrane biogen 45.0 32 0.00068 32.4 4.4 30 12-41 73-102 (243)
165 cd02677 MIT_SNX15 MIT: domain 44.9 36 0.00077 26.3 3.9 33 6-38 4-36 (75)
166 PRK02603 photosystem I assembl 44.6 40 0.00086 29.3 4.7 36 6-41 33-68 (172)
167 TIGR03302 OM_YfiO outer membra 43.6 46 0.001 30.1 5.2 34 8-41 33-66 (235)
168 KOG1586 Protein required for f 43.4 32 0.00069 32.9 4.0 40 3-42 68-107 (288)
169 COG2956 Predicted N-acetylgluc 43.0 39 0.00084 33.8 4.7 37 4-40 176-212 (389)
170 COG3898 Uncharacterized membra 42.8 43 0.00093 34.4 5.0 50 1-52 324-373 (531)
171 PRK11447 cellulose synthase su 42.7 55 0.0012 37.7 6.7 38 3-40 587-635 (1157)
172 cd00215 PTS_IIA_lac PTS_IIA, P 41.2 58 0.0013 26.5 4.8 36 4-39 11-46 (97)
173 PRK09591 celC cellobiose phosp 41.0 58 0.0013 26.9 4.8 34 6-39 18-51 (104)
174 PF12862 Apc5: Anaphase-promot 40.9 52 0.0011 25.9 4.5 35 8-42 41-75 (94)
175 TIGR00823 EIIA-LAC phosphotran 40.4 60 0.0013 26.5 4.8 36 4-39 13-48 (99)
176 PRK11788 tetratricopeptide rep 40.2 56 0.0012 31.8 5.5 31 12-42 253-283 (389)
177 TIGR03302 OM_YfiO outer membra 40.0 52 0.0011 29.7 4.9 31 12-42 74-104 (235)
178 PF04781 DUF627: Protein of un 39.6 45 0.00098 27.9 4.0 39 13-51 1-39 (111)
179 PRK10866 outer membrane biogen 39.2 53 0.0012 30.8 4.9 35 8-42 32-66 (243)
180 PF12895 Apc3: Anaphase-promot 39.0 57 0.0012 24.6 4.3 23 12-34 62-84 (84)
181 PF13512 TPR_18: Tetratricopep 38.9 57 0.0012 28.5 4.7 31 12-42 51-81 (142)
182 KOG0548 Molecular co-chaperone 38.8 50 0.0011 34.8 4.9 37 6-42 356-392 (539)
183 PRK10153 DNA-binding transcrip 38.7 64 0.0014 34.0 5.9 26 18-43 463-488 (517)
184 TIGR00540 hemY_coli hemY prote 38.5 73 0.0016 32.0 6.1 43 5-47 81-123 (409)
185 PF02255 PTS_IIA: PTS system, 38.5 71 0.0015 25.8 4.9 34 5-38 11-44 (96)
186 PF06692 MNSV_P7B: Melon necro 38.2 51 0.0011 24.2 3.5 25 249-273 16-40 (61)
187 TIGR00990 3a0801s09 mitochondr 38.1 29 0.00063 36.8 3.3 30 11-40 368-397 (615)
188 TIGR02521 type_IV_pilW type IV 37.8 52 0.0011 28.3 4.4 30 12-41 69-98 (234)
189 KOG0548 Molecular co-chaperone 37.4 38 0.00081 35.7 3.8 45 4-49 388-432 (539)
190 COG4235 Cytochrome c biogenesi 36.9 51 0.0011 32.2 4.4 43 4-47 152-194 (287)
191 PRK11189 lipoprotein NlpI; Pro 36.7 45 0.00098 32.0 4.1 32 9-40 65-96 (296)
192 PRK12370 invasion protein regu 36.2 44 0.00095 35.2 4.2 30 11-40 341-370 (553)
193 smart00671 SEL1 Sel1-like repe 35.7 71 0.0015 19.6 3.7 28 10-37 3-34 (36)
194 smart00386 HAT HAT (Half-A-TPR 35.3 43 0.00093 19.8 2.5 19 22-40 1-19 (33)
195 COG3063 PilF Tfp pilus assembl 35.1 42 0.00091 31.9 3.4 30 13-42 144-173 (250)
196 PRK15174 Vi polysaccharide exp 35.0 2.5E+02 0.0054 30.3 9.8 123 6-169 282-410 (656)
197 PF13763 DUF4167: Domain of un 34.4 74 0.0016 25.1 4.2 31 8-38 39-69 (80)
198 PF04505 Dispanin: Interferon- 34.3 46 0.001 26.1 3.1 24 15-38 44-67 (82)
199 PF14938 SNAP: Soluble NSF att 34.2 58 0.0013 31.0 4.4 38 4-41 70-107 (282)
200 PF13525 YfiO: Outer membrane 32.5 83 0.0018 28.4 5.0 33 10-42 44-76 (203)
201 COG4105 ComL DNA uptake lipopr 32.5 1.2E+02 0.0025 29.2 6.0 36 7-42 33-68 (254)
202 PRK10049 pgaA outer membrane p 32.2 1E+02 0.0022 33.9 6.4 28 14-41 399-426 (765)
203 KOG1173 Anaphase-promoting com 31.5 63 0.0014 34.4 4.3 37 14-50 495-532 (611)
204 PRK09782 bacteriophage N4 rece 31.4 89 0.0019 35.7 5.9 21 20-40 588-608 (987)
205 KOG2076 RNA polymerase III tra 30.9 66 0.0014 35.9 4.5 43 8-50 449-492 (895)
206 PRK14574 hmsH outer membrane p 30.5 1.2E+02 0.0025 34.1 6.5 27 15-41 109-135 (822)
207 PRK11447 cellulose synthase su 30.4 85 0.0019 36.2 5.7 28 13-40 390-417 (1157)
208 PRK10049 pgaA outer membrane p 30.4 87 0.0019 34.4 5.5 31 11-41 362-392 (765)
209 PRK10454 PTS system N,N'-diace 30.4 1E+02 0.0023 25.9 4.7 35 5-39 28-62 (115)
210 PF14575 EphA2_TM: Ephrin type 30.0 77 0.0017 24.4 3.6 13 289-301 49-61 (75)
211 PRK12370 invasion protein regu 29.9 57 0.0012 34.3 3.8 20 21-40 317-336 (553)
212 PF07709 SRR: Seven Residue Re 29.8 47 0.001 17.3 1.7 13 152-164 2-14 (14)
213 PF10041 DUF2277: Uncharacteri 29.7 2.1E+02 0.0046 22.4 5.9 46 110-155 2-47 (78)
214 COG5010 TadD Flp pilus assembl 29.5 77 0.0017 30.5 4.2 29 13-41 105-133 (257)
215 PF07720 TPR_3: Tetratricopept 29.5 1.6E+02 0.0036 19.3 4.7 31 10-40 3-35 (36)
216 PRK10153 DNA-binding transcrip 29.5 85 0.0018 33.1 5.0 36 6-41 337-375 (517)
217 smart00668 CTLH C-terminal to 28.6 83 0.0018 21.9 3.4 19 16-34 9-27 (58)
218 KOG1126 DNA-binding cell divis 28.4 33 0.00073 36.8 1.8 41 2-42 415-455 (638)
219 PF13429 TPR_15: Tetratricopep 28.1 83 0.0018 29.4 4.3 29 13-41 219-247 (280)
220 PF04733 Coatomer_E: Coatomer 28.1 74 0.0016 30.8 4.0 39 11-50 204-242 (290)
221 KOG2376 Signal recognition par 27.8 70 0.0015 34.3 3.9 31 9-39 176-206 (652)
222 KOG4056 Translocase of outer m 27.7 1.3E+02 0.0028 26.3 4.9 39 12-52 85-123 (143)
223 KOG0550 Molecular chaperone (D 27.0 36 0.00078 35.0 1.6 40 1-42 198-237 (486)
224 PRK09782 bacteriophage N4 rece 26.9 1.1E+02 0.0024 35.0 5.6 39 3-41 590-642 (987)
225 PF14938 SNAP: Soluble NSF att 26.8 54 0.0012 31.2 2.8 38 4-41 89-127 (282)
226 PLN03098 LPA1 LOW PSII ACCUMUL 26.3 1.1E+02 0.0024 31.8 5.0 29 10-38 114-142 (453)
227 KOG1127 TPR repeat-containing 25.9 73 0.0016 36.3 3.8 43 8-50 2-45 (1238)
228 KOG1126 DNA-binding cell divis 25.9 61 0.0013 34.9 3.1 36 6-41 438-488 (638)
229 KOG3442 Uncharacterized conser 25.3 1.1E+02 0.0023 26.3 3.9 48 115-165 63-110 (132)
230 PF08238 Sel1: Sel1 repeat; I 25.3 1.5E+02 0.0033 18.4 4.0 15 23-37 23-37 (39)
231 COG5010 TadD Flp pilus assembl 24.8 82 0.0018 30.2 3.5 35 8-42 134-168 (257)
232 PF15469 Sec5: Exocyst complex 24.3 66 0.0014 28.5 2.7 26 16-41 94-119 (182)
233 PF06552 TOM20_plant: Plant sp 24.1 1E+02 0.0022 28.2 3.8 41 2-42 65-114 (186)
234 PF07739 TipAS: TipAS antibiot 24.1 1.5E+02 0.0033 23.7 4.7 71 95-177 32-104 (118)
235 PRK11906 transcriptional regul 24.1 1.2E+02 0.0026 31.6 4.8 43 8-50 372-414 (458)
236 COG3947 Response regulator con 23.9 1.1E+02 0.0023 30.4 4.1 39 13-51 284-324 (361)
237 PRK00977 exodeoxyribonuclease 23.8 2.1E+02 0.0046 22.3 5.1 37 4-40 11-49 (80)
238 PF12793 SgrR_N: Sugar transpo 23.4 1.3E+02 0.0029 25.1 4.2 24 9-32 71-94 (115)
239 PF08631 SPO22: Meiosis protei 23.1 1.2E+02 0.0027 28.8 4.5 32 8-39 35-67 (278)
240 smart00685 DM14 Repeats in fly 23.0 1.3E+02 0.0027 22.4 3.5 30 11-40 11-40 (59)
241 PRK11788 tetratricopeptide rep 22.1 2E+02 0.0044 27.8 5.9 34 8-41 214-247 (389)
242 PF12273 RCR: Chitin synthesis 21.8 48 0.001 28.1 1.2 11 289-299 74-84 (130)
243 PF07811 TadE: TadE-like prote 21.4 78 0.0017 21.0 2.0 16 250-265 7-22 (43)
244 PRK15363 pathogenicity island 21.4 1.2E+02 0.0027 26.9 3.8 28 13-40 74-101 (157)
245 COG4105 ComL DNA uptake lipopr 21.1 1.4E+02 0.003 28.7 4.3 32 11-42 74-105 (254)
246 PRK10803 tol-pal system protei 21.0 1.3E+02 0.0029 28.6 4.2 29 12-40 184-212 (263)
247 PF13431 TPR_17: Tetratricopep 20.7 58 0.0013 20.8 1.2 25 5-29 10-34 (34)
248 COG4371 Predicted membrane pro 20.6 1.4E+02 0.0031 28.7 4.2 51 182-265 68-118 (334)
249 cd05804 StaR_like StaR_like; a 20.6 1.5E+02 0.0033 28.3 4.6 35 8-42 43-77 (355)
250 KOG0376 Serine-threonine phosp 20.5 54 0.0012 34.1 1.5 27 15-41 45-71 (476)
251 PF08969 USP8_dimer: USP8 dime 20.5 1.9E+02 0.0042 23.7 4.6 32 7-38 37-68 (115)
252 PRK09510 tolA cell envelope in 20.4 99 0.0022 31.5 3.3 21 245-265 15-35 (387)
253 KOG1497 COP9 signalosome, subu 20.2 1.3E+02 0.0028 30.1 3.9 33 7-39 143-175 (399)
254 cd00084 HMG-box High Mobility 20.0 2.1E+02 0.0044 20.1 4.2 42 129-174 12-53 (66)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.1e-28 Score=237.68 Aligned_cols=101 Identities=42% Similarity=0.700 Sum_probs=84.9
Q ss_pred ccCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-CCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCC
Q 018317 109 KTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK-APGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTH 187 (358)
Q Consensus 109 ~~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~-~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~ 187 (358)
..+|||+||||+++|+.+||||||||||++||||+|+ .++|+++||+|++||+|||||+||+.||+||..+......
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~-- 79 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGF-- 79 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCc--
Confidence 3589999999999999999999999999999999999 8899999999999999999999999999999987651111
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHhhCCCC
Q 018317 188 TRAARGFNGFYDSDIDAEEIFRNFFFGGM 216 (358)
Q Consensus 188 ~~~~~~~~g~~~~~~~~ed~F~~fFggg~ 216 (358)
+++++++|.+ ++.|||..|||||.
T Consensus 80 --gg~g~~~fgg---~~~DIF~~~FgGg~ 103 (371)
T COG0484 80 --GGFGFGGFGG---DFGDIFEDFFGGGG 103 (371)
T ss_pred --CCCCcCCCCC---CHHHHHHHhhcCCC
Confidence 1112333321 78999999997654
No 2
>PF09320 DUF1977: Domain of unknown function (DUF1977); InterPro: IPR015399 This C-terminal domain is functionally uncharacterised and predominantly found in Dnaj-like proteins.
Probab=99.92 E-value=1.6e-25 Score=185.81 Aligned_cols=89 Identities=38% Similarity=0.557 Sum_probs=81.8
Q ss_pred HhhCCCCCCccccccCCCCceeEeecC-CCceeecCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHHHH----
Q 018317 262 LQFLPSSDPIYALSRSYPYEYKFTTER-GVNFYVKSSKFEQDYPVGSVQRVRLEKQVEKDYFTILAQNCRLEIQRQ---- 336 (358)
Q Consensus 262 ~~~l~~~~p~ys~~~~~~~~~~r~T~~-~v~yyV~~~~f~~~y~~~~~~~~~lE~~Ve~~y~~~l~~~C~~e~~~~---- 336 (358)
++.|++++|.|||+++++|+++|+|++ +|+|||++ +|.++| ++.+|++||++||.+||++|+++|++|++++
T Consensus 2 ~s~l~s~~P~yS~~~s~~y~~~R~T~~~~V~YYV~~-~f~~~y--~~~~l~~lE~~VE~~yv~~L~~~C~~E~~~r~~l~ 78 (107)
T PF09320_consen 2 LSSLFSSDPSYSFTPSSPYTVERTTPNLKVPYYVNP-DFVQKY--SSSKLRQLERQVENDYVQNLRNQCERERQYRERLI 78 (107)
T ss_pred ccccCCCCCCeeecCCCCCceeeEcCCCCcceeECc-hhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677899999999999999999999 99999997 999999 5678999999999999999999999998765
Q ss_pred ------------HHhhhCCCCchHhhhhc
Q 018317 337 ------------QWGFIKETPHCDMWQKF 353 (358)
Q Consensus 337 ------------~~a~~~~~p~C~~l~~l 353 (358)
.||++|++|||++|++|
T Consensus 79 ~~a~~~~d~~~~~~A~~~~~psCd~L~~L 107 (107)
T PF09320_consen 79 ERARFYGDEEKLEKAQNMPMPSCDRLKKL 107 (107)
T ss_pred HHHHHccCHHHHHHHHhCCCchHHHHhcC
Confidence 57899999999999986
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.9e-24 Score=203.50 Aligned_cols=76 Identities=43% Similarity=0.798 Sum_probs=71.7
Q ss_pred HhhccCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-CCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCC
Q 018317 106 QIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK-APGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPV 181 (358)
Q Consensus 106 ~~~~~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~-~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~ 181 (358)
.+...+|||+||||+++|+..|||+||||||+++|||||+ +|.|.+.|+.|+.||+|||||++|+.||.+|+++..
T Consensus 11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~ 87 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK 87 (336)
T ss_pred hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence 4567899999999999999999999999999999999999 689999999999999999999999999999987765
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=9.8e-23 Score=197.45 Aligned_cols=70 Identities=44% Similarity=0.757 Sum_probs=66.3
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPV 181 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~ 181 (358)
...||+||||+++|+.+|||||||+||++||||||+. +.++|++|+.||+|||||+||..||++|+++.+
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~ 72 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQ 72 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence 4689999999999999999999999999999999965 899999999999999999999999999988764
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2e-22 Score=200.63 Aligned_cols=71 Identities=37% Similarity=0.708 Sum_probs=67.6
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 180 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~ 180 (358)
.+|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||+||+||+||+.||++|.++.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~ 73 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence 47999999999999999999999999999999999888899999999999999999999999999998654
No 6
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.86 E-value=1.2e-21 Score=188.49 Aligned_cols=77 Identities=35% Similarity=0.611 Sum_probs=68.3
Q ss_pred HHhhccCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCC----ChHHHHHHHHHHHHHcCChhhhhhhcccCCCCC
Q 018317 105 RQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAP----GAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 180 (358)
Q Consensus 105 ~~~~~~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~----~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~ 180 (358)
.+....+|||+||||.++|+..||.|||||+|.+||||...++ .|+.+|..|..|-+||+||++|+.||. |.++.
T Consensus 388 kkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPL 466 (504)
T KOG0624|consen 388 KKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPL 466 (504)
T ss_pred HHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCC
Confidence 3445689999999999999999999999999999999998764 478899999999999999999999998 66665
Q ss_pred CC
Q 018317 181 VY 182 (358)
Q Consensus 181 ~~ 182 (358)
..
T Consensus 467 D~ 468 (504)
T KOG0624|consen 467 DP 468 (504)
T ss_pred Ch
Confidence 43
No 7
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=6.8e-22 Score=196.63 Aligned_cols=99 Identities=37% Similarity=0.620 Sum_probs=77.9
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-CCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK-APGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHT 188 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~-~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 188 (358)
..|||+||||+++||.+|||+|||+||++||||+|+ .+.|+++|+.|++||+||+||++|+.||++|.++.... .
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~--~-- 77 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQA--G-- 77 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccC--C--
Confidence 379999999999999999999999999999999997 56789999999999999999999999999998654311 0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHhhCCC
Q 018317 189 RAARGFNGFYDSDIDAEEIFRNFFFGG 215 (358)
Q Consensus 189 ~~~~~~~g~~~~~~~~ed~F~~fFggg 215 (358)
++..++.++|. +.+++|..|||+|
T Consensus 78 ~~~~~~~~~f~---~~~~~F~~~fg~g 101 (369)
T PRK14288 78 ASQSDFSDFFE---DLGSFFEDAFGFG 101 (369)
T ss_pred CCccccccchh---hHHHHHHhhcCCC
Confidence 00011122221 3467888888743
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.2e-21 Score=195.02 Aligned_cols=104 Identities=36% Similarity=0.615 Sum_probs=80.2
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-CCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK-APGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHT 188 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~-~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 188 (358)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|++|++||+||+||.+|+.||++|.++...... +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~--~ 80 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAG--G 80 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccC--C
Confidence 369999999999999999999999999999999997 4678999999999999999999999999999875432100 0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHhhCCC
Q 018317 189 RAARGFNGFYDSDIDAEEIFRNFFFGG 215 (358)
Q Consensus 189 ~~~~~~~g~~~~~~~~ed~F~~fFggg 215 (358)
.+.+++.+|.....+++|+|+.||||+
T Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~ffgg~ 107 (372)
T PRK14286 81 FGQGAYTDFSDIFGDFGDIFGDFFGGG 107 (372)
T ss_pred CCCCCcccccccccchhhHHHHhhCCC
Confidence 001111111100125679999999864
No 9
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4e-21 Score=191.79 Aligned_cols=103 Identities=41% Similarity=0.687 Sum_probs=81.0
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTR 189 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 189 (358)
..|||+||||+++|+.++||+|||+||++||||+|+.+.++++|+.|++||+||+||.+|+.||++|.++.......
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~--- 79 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGG--- 79 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCC---
Confidence 36999999999999999999999999999999999988899999999999999999999999999998765321000
Q ss_pred CCCCCCCCC--CCCCCHHHHHHHhhCCC
Q 018317 190 AARGFNGFY--DSDIDAEEIFRNFFFGG 215 (358)
Q Consensus 190 ~~~~~~g~~--~~~~~~ed~F~~fFggg 215 (358)
..+++++|. ....+++|+|+.||||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~d~f~~~fgg~ 107 (380)
T PRK14276 80 GAGGFGGFDGSGGFGGFEDIFSSFFGGG 107 (380)
T ss_pred CCCCCCCccccccccchhhHHHHHhCcc
Confidence 001111111 01124679999999853
No 10
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.3e-21 Score=184.64 Aligned_cols=105 Identities=35% Similarity=0.616 Sum_probs=80.7
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTR 189 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 189 (358)
..|||+||||+++|+.++||+|||+||++||||+|+.+.++++|+.|++||++|+||.+|+.||++|.++..........
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 47999999999999999999999999999999999888899999999999999999999999999998643211000000
Q ss_pred CCCCCCCCCC-CCCCHHHHHHHhhCC
Q 018317 190 AARGFNGFYD-SDIDAEEIFRNFFFG 214 (358)
Q Consensus 190 ~~~~~~g~~~-~~~~~ed~F~~fFgg 214 (358)
+.++..+|-+ ...+++++|+.||||
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~fgg 108 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLFGG 108 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHhCC
Confidence 0011111101 113578999999985
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.8e-21 Score=191.41 Aligned_cols=97 Identities=43% Similarity=0.778 Sum_probs=79.7
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTR 189 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 189 (358)
..|||+||||+++|+.++||+|||+||++||||+|+.+.++++|+.|++||++|+||++|+.||++|.++..... +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~---~- 78 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGF---G- 78 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccccccc---C-
Confidence 369999999999999999999999999999999998888999999999999999999999999999986543110 0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhCCC
Q 018317 190 AARGFNGFYDSDIDAEEIFRNFFFGG 215 (358)
Q Consensus 190 ~~~~~~g~~~~~~~~ed~F~~fFggg 215 (358)
++++.+| . +++|+|+.|||||
T Consensus 79 -~~~~~~f-~---~~~d~f~~~fgg~ 99 (371)
T PRK14287 79 -GGGAGDF-G---GFSDIFDMFFGGG 99 (371)
T ss_pred -CCCCccc-c---chHHHHHhhhccc
Confidence 1111122 1 2578999999854
No 12
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=7.4e-21 Score=189.68 Aligned_cols=101 Identities=43% Similarity=0.742 Sum_probs=80.3
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCCCC
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRA 190 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~ 190 (358)
.|||+||||+++|+.++||+|||+||++||||+|+.+.++++|++|++||+||+||.+|+.||++|.++...... .+
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~---~~ 80 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFG---GG 80 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcC---CC
Confidence 699999999999999999999999999999999998889999999999999999999999999999875432100 00
Q ss_pred CCCCCCCCCCCCCHHHHHHHhhCCC
Q 018317 191 ARGFNGFYDSDIDAEEIFRNFFFGG 215 (358)
Q Consensus 191 ~~~~~g~~~~~~~~ed~F~~fFggg 215 (358)
+.+..+| ...++++|+|..||||+
T Consensus 81 ~~~~~~~-~~~~~~~d~f~~~fgg~ 104 (376)
T PRK14280 81 GFGGGDF-GGGFGFEDIFSSFFGGG 104 (376)
T ss_pred CCCCCCc-cccccchhhHHHHhCCc
Confidence 0000111 11224679999999754
No 13
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=7.8e-21 Score=188.80 Aligned_cols=104 Identities=38% Similarity=0.670 Sum_probs=79.3
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-CChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCCC
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA-PGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTR 189 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~-~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 189 (358)
.|||+||||+++|+.++||+|||+||++||||+|+. +.++++|++|++||+||+||.+|..||++|..+..... ...+
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~-~~~~ 81 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGG-GFEG 81 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCC-Cccc
Confidence 699999999999999999999999999999999974 56889999999999999999999999999986543110 0000
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhCCC
Q 018317 190 AARGFNGFYDSDIDAEEIFRNFFFGG 215 (358)
Q Consensus 190 ~~~~~~g~~~~~~~~ed~F~~fFggg 215 (358)
..+++.+|.....+++|+|..||||+
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~ 107 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGN 107 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCC
Confidence 00111111111134679999999853
No 14
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=9.5e-21 Score=188.89 Aligned_cols=100 Identities=45% Similarity=0.705 Sum_probs=79.4
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTR 189 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 189 (358)
.+|||+||||+++|+.++||+|||+||++||||+|+.+.++++|++|++||+||+||.+|+.||++|.++....... .
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~-~- 81 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSA-E- 81 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCc-c-
Confidence 46999999999999999999999999999999999888899999999999999999999999999998654311000 0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhCCC
Q 018317 190 AARGFNGFYDSDIDAEEIFRNFFFGG 215 (358)
Q Consensus 190 ~~~~~~g~~~~~~~~ed~F~~fFggg 215 (358)
...+..+| .++.|+|++||||+
T Consensus 82 ~~~~~~~~----~~~~d~f~~~Fgg~ 103 (377)
T PRK14298 82 DIFRGADF----GGFGDIFEMFFGGG 103 (377)
T ss_pred cccccCCc----CcchhhhHhhhcCC
Confidence 00001111 12468999999864
No 15
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.3e-20 Score=188.00 Aligned_cols=96 Identities=36% Similarity=0.693 Sum_probs=77.9
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCCCC
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRA 190 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~ 190 (358)
+|||+||||+++|+.++||+|||+||++||||+|+.+.++++|+.|++||+||+||.+|+.||++|.+..... . .
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~----~-~ 77 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAG----G-G 77 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCcccccc----C-C
Confidence 6999999999999999999999999999999999887889999999999999999999999999997522110 0 0
Q ss_pred CCCCC-CCCCCCCCHHHHHHHhhCCC
Q 018317 191 ARGFN-GFYDSDIDAEEIFRNFFFGG 215 (358)
Q Consensus 191 ~~~~~-g~~~~~~~~ed~F~~fFggg 215 (358)
.++++ +| .+++|+|+.||||+
T Consensus 78 ~~g~~~~f----~~~~d~f~~ffgg~ 99 (378)
T PRK14278 78 GGGFGGGF----GGLGDVFEAFFGGG 99 (378)
T ss_pred CCCCCcCc----CchhHHHHHHhCCC
Confidence 01111 12 13578999999854
No 16
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.6e-20 Score=187.47 Aligned_cols=103 Identities=41% Similarity=0.718 Sum_probs=79.8
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-CChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA-PGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHT 188 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~-~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 188 (358)
..|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|+.|++||+||+||.+|+.||++|.++...... .
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~--~ 80 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGG--F 80 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCC--C
Confidence 3699999999999999999999999999999999974 578999999999999999999999999999875431100 0
Q ss_pred CCCCCCCCCCCCC-CCHHHHHHHhhCCC
Q 018317 189 RAARGFNGFYDSD-IDAEEIFRNFFFGG 215 (358)
Q Consensus 189 ~~~~~~~g~~~~~-~~~ed~F~~fFggg 215 (358)
+.+++++|-..+ .+++|+|++||||+
T Consensus 81 -~~~~~~~~~~~~~~~~~d~f~~~fgg~ 107 (380)
T PRK14297 81 -GSGGFGGFDFSDMGGFGDIFDSFFGGG 107 (380)
T ss_pred -CCCCCCCcCcccccchhHHHHHHhccC
Confidence 001111211011 24679999999863
No 17
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.1e-20 Score=185.89 Aligned_cols=97 Identities=42% Similarity=0.720 Sum_probs=78.1
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-CCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK-APGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHT 188 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~-~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 188 (358)
..|||+||||+++|+.++||+|||+||++||||+++ .+.+++.|+.|++||+||+||.+|+.||++|.++.....
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~---- 78 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTG---- 78 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCC----
Confidence 479999999999999999999999999999999997 467889999999999999999999999999987543110
Q ss_pred CCCCCCCCCCCCC-CCHHHHHHHhhC
Q 018317 189 RAARGFNGFYDSD-IDAEEIFRNFFF 213 (358)
Q Consensus 189 ~~~~~~~g~~~~~-~~~ed~F~~fFg 213 (358)
.+++++| ... .++.|+|+.|||
T Consensus 79 --~~~~~~~-~~~~~~~~d~f~~~fg 101 (366)
T PRK14294 79 --FSGFSGF-DDIFSSFGDIFEDFFG 101 (366)
T ss_pred --CCCcCcc-ccchhhhhhhHHHhhc
Confidence 0111122 111 235689999997
No 18
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.2e-20 Score=185.92 Aligned_cols=71 Identities=38% Similarity=0.707 Sum_probs=66.0
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC--CChHHHHHHHHHHHHHcCChhhhhhhcccCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA--PGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 180 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~--~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~ 180 (358)
.+|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|+.||++|.++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 4799999999999999999999999999999999974 4688999999999999999999999999997654
No 19
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.82 E-value=1.9e-20 Score=188.73 Aligned_cols=88 Identities=39% Similarity=0.709 Sum_probs=74.7
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTR 189 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 189 (358)
..|||+||||+++|+.++||+|||+||++||||||++ .++|++|++||+||+||.||+.||.+|..+...
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~------- 96 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEG------- 96 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchhccc-------
Confidence 4799999999999999999999999999999999853 689999999999999999999999999764321
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhCCC
Q 018317 190 AARGFNGFYDSDIDAEEIFRNFFFGG 215 (358)
Q Consensus 190 ~~~~~~g~~~~~~~~ed~F~~fFggg 215 (358)
.. + ..++.++|..|||||
T Consensus 97 -~~---~----~~d~~d~f~~~Fggg 114 (421)
T PTZ00037 97 -GE---Q----PADASDLFDLIFGGG 114 (421)
T ss_pred -CC---C----CcchhhhHHHhhccc
Confidence 00 0 124678999999864
No 20
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.4e-20 Score=184.04 Aligned_cols=72 Identities=43% Similarity=0.742 Sum_probs=67.0
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-CCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK-APGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPV 181 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~-~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~ 181 (358)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.++++|+.|++||+||+||.+|..||++|.++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 76 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFD 76 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccc
Confidence 479999999999999999999999999999999997 467889999999999999999999999999986543
No 21
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=8.3e-20 Score=182.51 Aligned_cols=100 Identities=43% Similarity=0.720 Sum_probs=78.8
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTR 189 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 189 (358)
.+|||+||||+++|+.++||+|||+||++||||+|+.+.++++|+.|++||+||+||.+|+.||++|.++....... ..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~-~~ 80 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQ-QQ 80 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCc-cc
Confidence 37999999999999999999999999999999999888899999999999999999999999999998654321100 00
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhh
Q 018317 190 AARGFNGFYDSDIDAEEIFRNFF 212 (358)
Q Consensus 190 ~~~~~~g~~~~~~~~ed~F~~fF 212 (358)
+..++.++ ...+++|+|..||
T Consensus 81 ~~~~~~~~--~~~~~~d~f~~~f 101 (382)
T PRK14291 81 GQEGFSDF--GGGNIEDILEDVF 101 (382)
T ss_pred cccccccc--cCCCHHHHHHHHH
Confidence 01111111 1235778998885
No 22
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=6.5e-20 Score=183.75 Aligned_cols=69 Identities=49% Similarity=0.774 Sum_probs=65.3
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-CCChHHHHHHHHHHHHHcCChhhhhhhcccCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK-APGAEEAFKAVSKAFQCLSNDESRKKYDITGSD 178 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~-~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~ 178 (358)
.+|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|++|++||+||+||+||+.||++|..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 479999999999999999999999999999999997 457899999999999999999999999999864
No 23
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=6.1e-20 Score=183.25 Aligned_cols=71 Identities=45% Similarity=0.835 Sum_probs=67.8
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 180 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~ 180 (358)
..|||+||||+++|+.+|||+|||+||++||||+|+.+.++++|++|++||++|+||.+|+.||++|.++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 57999999999999999999999999999999999888899999999999999999999999999998654
No 24
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.1e-19 Score=181.05 Aligned_cols=97 Identities=38% Similarity=0.729 Sum_probs=79.8
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCCCC
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRA 190 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~ 190 (358)
.|||+||||+++|+.++||+|||+|++++|||+++.+.++++|+.|++||++|+||.+|+.||.+|.++... . . +
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~--~--~-~ 76 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAG--M--P-G 76 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCccccc--c--c-C
Confidence 589999999999999999999999999999999988889999999999999999999999999999864210 0 0 0
Q ss_pred CCCCCCCCCCCCCHHHHHHHhhCCC
Q 018317 191 ARGFNGFYDSDIDAEEIFRNFFFGG 215 (358)
Q Consensus 191 ~~~~~g~~~~~~~~ed~F~~fFggg 215 (358)
.++++++ .++++|+|..|||++
T Consensus 77 ~~~~~~~---~~d~~d~f~~~fg~~ 98 (371)
T PRK14292 77 GDPFGGM---GFDPMDIFEQLFGGA 98 (371)
T ss_pred CcccCcc---CCChHHHHHHhhCCC
Confidence 0111121 246889999999864
No 25
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=9.7e-20 Score=181.47 Aligned_cols=71 Identities=41% Similarity=0.820 Sum_probs=66.2
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-CChHHHHHHHHHHHHHcCChhhhhhhcccCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA-PGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 180 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~-~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~ 180 (358)
..|||+||||+++|+.++||+|||+||++||||+|+. +.++++|+.|++||+||+||.+|+.||++|.++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~ 74 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence 3699999999999999999999999999999999974 5688999999999999999999999999998654
No 26
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.79 E-value=1.9e-19 Score=178.18 Aligned_cols=101 Identities=44% Similarity=0.685 Sum_probs=79.2
Q ss_pred ChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCCCCC
Q 018317 112 DFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRAA 191 (358)
Q Consensus 112 d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~~ 191 (358)
|||+||||+++|+.++||+|||+||++||||+++.+.++++|+.|++||++|+|+.+|..||.+|.++...... +..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~---~~~ 77 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGG---GGG 77 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCc---CCC
Confidence 79999999999999999999999999999999987788999999999999999999999999999865432110 001
Q ss_pred CCCCCCCC-CCCCHHHHHHHhhCCC
Q 018317 192 RGFNGFYD-SDIDAEEIFRNFFFGG 215 (358)
Q Consensus 192 ~~~~g~~~-~~~~~ed~F~~fFggg 215 (358)
+++.++.. ...++.++|++|||++
T Consensus 78 ~~~~~~~~~~~~~~~~~f~~~fg~~ 102 (354)
T TIGR02349 78 GGFNGFDIGFFGDFGDIFGDFFGGG 102 (354)
T ss_pred CCcCCccccCcCchhhhHHHHhccC
Confidence 11111100 1124679999999854
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.9e-19 Score=179.40 Aligned_cols=71 Identities=49% Similarity=0.855 Sum_probs=66.3
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-CChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCC
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA-PGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPV 181 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~-~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~ 181 (358)
.|||+||||+++|+.++||+|||+||++||||+++. +.+++.|+.|++||++|+||.+|+.||++|.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~ 74 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVG 74 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhc
Confidence 699999999999999999999999999999999974 56889999999999999999999999999986543
No 28
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.4e-19 Score=179.68 Aligned_cols=70 Identities=47% Similarity=0.851 Sum_probs=65.7
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-CCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCC
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK-APGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 180 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~-~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~ 180 (358)
.|||+||||+++|+.++||+|||+||++||||+|+ .+.++++|+.|++||+||+||++|+.||++|.++.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 48999999999999999999999999999999998 46789999999999999999999999999998653
No 29
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.9e-19 Score=177.06 Aligned_cols=99 Identities=37% Similarity=0.651 Sum_probs=77.3
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-CCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK-APGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHT 188 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~-~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 188 (358)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.++++|+.|++||++|+||.+|..||++|..+......
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~--- 79 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGG--- 79 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCC---
Confidence 469999999999999999999999999999999997 4568899999999999999999999999999865431100
Q ss_pred CCCCCCCCCCCCCCC-HHHHHHHhhCC
Q 018317 189 RAARGFNGFYDSDID-AEEIFRNFFFG 214 (358)
Q Consensus 189 ~~~~~~~g~~~~~~~-~ed~F~~fFgg 214 (358)
.+++.++ .+..+ .+++|..||||
T Consensus 80 --~~~~~~~-~~~~~~f~~~f~~~fgg 103 (371)
T PRK10767 80 --GGGFGGG-GGFGDIFGDIFGDIFGG 103 (371)
T ss_pred --CCCCCCc-cccccchhhhhhhhccC
Confidence 0111111 00012 46889998875
No 30
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=6e-19 Score=175.36 Aligned_cols=98 Identities=38% Similarity=0.661 Sum_probs=78.2
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCC--ChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCC
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAP--GAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHT 188 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~--~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 188 (358)
.|||+||||+++|+.++||+|||+|++++|||+++.. .|+++|+.|++||++|+||.+|..||.+|..+... .
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~---~-- 77 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGA---G-- 77 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccccc---C--
Confidence 6999999999999999999999999999999999753 68899999999999999999999999999865421 0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHhhCC
Q 018317 189 RAARGFNGFYDSDIDAEEIFRNFFFG 214 (358)
Q Consensus 189 ~~~~~~~g~~~~~~~~ed~F~~fFgg 214 (358)
++..++.+| ....+++|+|..||||
T Consensus 78 ~~~~~~~~~-~~~~~~~d~f~~~fg~ 102 (365)
T PRK14290 78 GSNFNWDNF-THFSDINDIFNQIFGG 102 (365)
T ss_pred CCCcccccc-ccccchhHHHHHHhcC
Confidence 000011111 1113578999999985
No 31
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=9.3e-19 Score=175.30 Aligned_cols=71 Identities=44% Similarity=0.771 Sum_probs=66.1
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-CCChHHHHHHHHHHHHHcCChhhhhhhcc----cCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK-APGAEEAFKAVSKAFQCLSNDESRKKYDI----TGSDEP 180 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~-~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~----~g~~~~ 180 (358)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.++++|+.|++||+||+||.+|+.||+ +|.++.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 479999999999999999999999999999999997 45689999999999999999999999999 887654
No 32
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.4e-18 Score=168.87 Aligned_cols=151 Identities=25% Similarity=0.357 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIESDPNTNPNGPSAEPNSKPSDQSTIRHRGPSTGASPS 87 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (358)
|.-....|...+.-|.+..|+..|+.|+.|+|+ =+++++.+...+..- ..+...++.-. ..-.. .
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~l------------e~~e~AV~d~~-~a~q~-~ 351 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLAL------------EKWEEAVEDYE-KAMQL-E 351 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHH------------HHHHHHHHHHH-HHHhh-c
Confidence 445667888888889999999999999999998 344444443321100 00000000000 00000 0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhccCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC--CChHHHHHHHHHHHHHcCC
Q 018317 88 ASSSTSPAYTEEQIAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA--PGAEEAFKAVSKAFQCLSN 165 (358)
Q Consensus 88 ~~~~~~~~~t~e~~~~~~~~~~~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~--~~a~~~fk~i~~Ay~vLsd 165 (358)
.+..-.+.+.+.+ ...+..+.+|||+||||.++++..+||++||++++.+|||++.. .+++..|+.|.+||.+|+|
T Consensus 352 ~s~e~r~~l~~A~--~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d 429 (486)
T KOG0550|consen 352 KDCEIRRTLREAQ--LALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSD 429 (486)
T ss_pred cccchHHHHHHHH--HHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcC
Confidence 0000111122222 22345678999999999999999999999999999999999873 5788899999999999999
Q ss_pred hhhhhhhccc
Q 018317 166 DESRKKYDIT 175 (358)
Q Consensus 166 ~~kR~~YD~~ 175 (358)
|.+|.+||..
T Consensus 430 ~~kr~r~dsg 439 (486)
T KOG0550|consen 430 PMKRVRFDSG 439 (486)
T ss_pred HHHHhhcccc
Confidence 9999999984
No 33
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.6e-18 Score=172.74 Aligned_cols=95 Identities=38% Similarity=0.709 Sum_probs=77.5
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCCCC
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRA 190 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~ 190 (358)
.|||+||||+++|+.++||+|||+|++++|||+|+.+.++++|+.|++||+||+||.+|+.||.+|..+.... . +
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~-~----~ 77 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGA-A----G 77 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccC-C----C
Confidence 6999999999999999999999999999999999988899999999999999999999999999997654310 0 0
Q ss_pred CCCCCCCCCCCCCHHHHHHHhhCC
Q 018317 191 ARGFNGFYDSDIDAEEIFRNFFFG 214 (358)
Q Consensus 191 ~~~~~g~~~~~~~~ed~F~~fFgg 214 (358)
..++.++ .+..++|..|||+
T Consensus 78 ~~~~~~~----~~~~d~f~~~fg~ 97 (374)
T PRK14293 78 FPDMGDM----GGFADIFETFFSG 97 (374)
T ss_pred cCCcccc----cchHHHHHHHhcc
Confidence 0011111 1246899999963
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.76 E-value=2.2e-18 Score=167.47 Aligned_cols=101 Identities=31% Similarity=0.516 Sum_probs=78.1
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCCCC
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRA 190 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~ 190 (358)
+|||+||||+++++.++||+|||+||+++|||+++.+.++++|+.|++||++|+||.+|..||.+|...... .......
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~-~~~~~~~ 82 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDP-QFNRQFQ 82 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCc-ccccccc
Confidence 699999999999999999999999999999999988889999999999999999999999999988532100 0000000
Q ss_pred CCCCCCCCCCCCCHHHHHHHhhCC
Q 018317 191 ARGFNGFYDSDIDAEEIFRNFFFG 214 (358)
Q Consensus 191 ~~~~~g~~~~~~~~ed~F~~fFgg 214 (358)
.+++.++ ...+++++|..|||+
T Consensus 83 ~~~~~~~--~~~~~~~~f~~~~g~ 104 (306)
T PRK10266 83 HGDGQSF--NAEDFDDIFSSIFGQ 104 (306)
T ss_pred cCCCCCC--CCCCHHHHHHHHhCC
Confidence 0111111 123578999999985
No 35
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.5e-18 Score=172.93 Aligned_cols=70 Identities=37% Similarity=0.712 Sum_probs=66.8
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCC
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 180 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~ 180 (358)
.|||+||||+++|+.++||+|||+||++||||+++.+.++++|+.|++||++|+|+.+|..||++|.++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 6999999999999999999999999999999999877889999999999999999999999999998654
No 36
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.7e-18 Score=171.90 Aligned_cols=71 Identities=41% Similarity=0.790 Sum_probs=66.3
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-CCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK-APGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 180 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~-~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~ 180 (358)
..|||+||||+++|+.+|||+|||+||++||||+|+ .+.++++|+.|++||++|+||.+|+.||++|..+.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~ 75 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 479999999999999999999999999999999997 45789999999999999999999999999998654
No 37
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.73 E-value=4.9e-18 Score=180.78 Aligned_cols=92 Identities=23% Similarity=0.287 Sum_probs=78.0
Q ss_pred ccCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCC
Q 018317 109 KTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHT 188 (358)
Q Consensus 109 ~~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 188 (358)
...+||+||||+++|+..+||+|||+||+++||||++.+.|.++|+.|++||+|||||.+|+.||.+|..+...
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~------ 644 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG------ 644 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC------
Confidence 36899999999999999999999999999999999987778899999999999999999999999999865321
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHhhCCCCC
Q 018317 189 RAARGFNGFYDSDIDAEEIFRNFFFGGMP 217 (358)
Q Consensus 189 ~~~~~~~g~~~~~~~~ed~F~~fFggg~~ 217 (358)
. ..++|..+| |+||+..|
T Consensus 645 ------~----~~iDP~~Ff-mlFgse~F 662 (1136)
T PTZ00341 645 ------V----NFIHPSIFY-LLASLEKF 662 (1136)
T ss_pred ------C----CccCHHHHH-HHhhhHHH
Confidence 1 135676555 77776533
No 38
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.6e-17 Score=159.95 Aligned_cols=87 Identities=37% Similarity=0.713 Sum_probs=76.4
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCCCC
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHTRA 190 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~ 190 (358)
.|||+||||+++|+..|||+||++||+++|||.|..+++.+.|++|.+||+||+|++||..||.+|....
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~---------- 112 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH---------- 112 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc----------
Confidence 3999999999999999999999999999999999999999999999999999999999999999887540
Q ss_pred CCCCCCCCCCCCCHHHHHHHhhCC
Q 018317 191 ARGFNGFYDSDIDAEEIFRNFFFG 214 (358)
Q Consensus 191 ~~~~~g~~~~~~~~ed~F~~fFgg 214 (358)
++ ...+|.++|..+|++
T Consensus 113 -~~------~~g~~~~~~~~~~~~ 129 (288)
T KOG0715|consen 113 -GE------FGGNPFDVFLEFFGG 129 (288)
T ss_pred -cc------ccCCccchHHHhhcc
Confidence 00 111567788888876
No 39
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.5e-17 Score=159.77 Aligned_cols=92 Identities=36% Similarity=0.612 Sum_probs=81.1
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-CCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK-APGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHT 188 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~-~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 188 (358)
..|||+||||+.+++..+|++|||+.|++||||||+ +|.|.+.|+.|.+||+||+|+.+|..||.+|..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~----- 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ----- 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-----
Confidence 679999999999999999999999999999999999 68899999999999999999999999999987654310
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHhhCCCCC
Q 018317 189 RAARGFNGFYDSDIDAEEIFRNFFFGGMP 217 (358)
Q Consensus 189 ~~~~~~~g~~~~~~~~ed~F~~fFggg~~ 217 (358)
...++.+.|.+-||+..+
T Consensus 79 -----------~~~d~~~~~r~~f~~dl~ 96 (296)
T KOG0691|consen 79 -----------GREDQADGFRKKFGSDLF 96 (296)
T ss_pred -----------hhhhHHHHHHHHhhhhhh
Confidence 124678899999987654
No 40
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.4e-17 Score=155.72 Aligned_cols=71 Identities=39% Similarity=0.717 Sum_probs=67.3
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-CChHHHHHHHHHHHHHcCChhhhhhhcccCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA-PGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 180 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~-~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~ 180 (358)
..|+|+||||+++|+.++|||+||+|++++|||++++ |++.++|+.||+||++|+||.+|..||.+|..+.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l 101 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGL 101 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence 6789999999999999999999999999999999986 8999999999999999999999999999987543
No 41
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.68 E-value=3e-17 Score=123.06 Aligned_cols=62 Identities=44% Similarity=0.791 Sum_probs=59.4
Q ss_pred ChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCC--hHHHHHHHHHHHHHcCChhhhhhhc
Q 018317 112 DFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPG--AEEAFKAVSKAFQCLSNDESRKKYD 173 (358)
Q Consensus 112 d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~--a~~~fk~i~~Ay~vLsd~~kR~~YD 173 (358)
|||+||||+++++.++||++|+++++++|||++.... +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999988766 8899999999999999999999998
No 42
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=6.8e-17 Score=160.06 Aligned_cols=72 Identities=36% Similarity=0.650 Sum_probs=66.0
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC--CChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA--PGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPV 181 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~--~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~ 181 (358)
.+.||+||||.+++++.+||++||+|||+||||||+. ..+++.|+.|+.||+|||||..|..||.+-.+.+.
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 4789999999999999999999999999999999885 46789999999999999999999999998775543
No 43
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.5e-16 Score=157.78 Aligned_cols=72 Identities=35% Similarity=0.653 Sum_probs=67.2
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCC----ChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAP----GAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPV 181 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~----~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~ 181 (358)
+.|||.+|+|+++|+.+|||+|||++++.|||||..+| .|++.|..|.+||+||+||.+|..||.+|.++..
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 45899999999999999999999999999999998754 4788999999999999999999999999998765
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.64 E-value=4.4e-16 Score=136.45 Aligned_cols=87 Identities=22% Similarity=0.322 Sum_probs=74.2
Q ss_pred CChhhhhCcCCCC--CHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCCC
Q 018317 111 KDFYEILGVERSC--TVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTHT 188 (358)
Q Consensus 111 ~d~Y~iLgv~~~a--~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 188 (358)
..+|+||||+++| +.++||+|||++++++||||+ +.+++|+.|++||++|+|+.+|..||.+|.+.....
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg---g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~----- 76 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG---GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE----- 76 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---chhHHHHHHHHHHHHHhhHHHhccccccCCcccccc-----
Confidence 3579999999999 999999999999999999997 457899999999999999999999999997654310
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHhhCCCCC
Q 018317 189 RAARGFNGFYDSDIDAEEIFRNFFFGGMP 217 (358)
Q Consensus 189 ~~~~~~~g~~~~~~~~ed~F~~fFggg~~ 217 (358)
...|.++|.+.|||+.+
T Consensus 77 ------------~~~~~~~f~~~fg~~~~ 93 (153)
T PHA03102 77 ------------EDVPSGYVGATFGDRVN 93 (153)
T ss_pred ------------cccHHHHhhhhcCCcch
Confidence 11288999999987643
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.7e-16 Score=144.15 Aligned_cols=89 Identities=46% Similarity=0.702 Sum_probs=74.7
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC---CChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA---PGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRT 186 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~---~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~ 186 (358)
.+|+|+||||.++|++.+|++||++|+|++|||+++. ..+.+.|+.|+.||+||+|.++|+.||..|.-....
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~idd~~---- 88 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSIDDES---- 88 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCCCcc----
Confidence 5699999999999999999999999999999999963 468899999999999999999999999988733110
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHhhC
Q 018317 187 HTRAARGFNGFYDSDIDAEEIFRNFFF 213 (358)
Q Consensus 187 ~~~~~~~~~g~~~~~~~~ed~F~~fFg 213 (358)
..-+.++-++|++.|-
T Consensus 89 -----------~d~~~~~~e~~~~iyk 104 (264)
T KOG0719|consen 89 -----------GDIDEDWLEFWRAIYK 104 (264)
T ss_pred -----------chhhhHHHHHHHHHHh
Confidence 0123467788888874
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.59 E-value=2.1e-15 Score=157.74 Aligned_cols=70 Identities=41% Similarity=0.783 Sum_probs=66.3
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCCCC
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSDEP 180 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~ 180 (358)
.|||+||||+++|+.++||++||+|++++|||++..+.+.++|+.|++||++|+||.+|..||.+|..+.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 6999999999999999999999999999999999888888999999999999999999999999987553
No 47
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.58 E-value=2.6e-15 Score=110.83 Aligned_cols=57 Identities=51% Similarity=0.925 Sum_probs=53.7
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC--CCChHHHHHHHHHHHHHcCChh
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNK--APGAEEAFKAVSKAFQCLSNDE 167 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~--~~~a~~~fk~i~~Ay~vLsd~~ 167 (358)
.|||+||||+++++.++||++|+++++++|||++. .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999997 5678899999999999999985
No 48
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.55 E-value=7e-15 Score=106.49 Aligned_cols=54 Identities=52% Similarity=0.945 Sum_probs=51.4
Q ss_pred ChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-CChHHHHHHHHHHHHHcCC
Q 018317 112 DFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA-PGAEEAFKAVSKAFQCLSN 165 (358)
Q Consensus 112 d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~-~~a~~~fk~i~~Ay~vLsd 165 (358)
|||+||||+++++.++||++|++|++++|||++.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999976 6789999999999999986
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.5e-14 Score=131.49 Aligned_cols=70 Identities=40% Similarity=0.756 Sum_probs=65.1
Q ss_pred ccCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-CChHHHHHHHHHHHHHcCChhhhhhhcccCCC
Q 018317 109 KTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA-PGAEEAFKAVSKAFQCLSNDESRKKYDITGSD 178 (358)
Q Consensus 109 ~~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~-~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~ 178 (358)
..-|+|+||||++++++.|||||||+|++++||||++. .+.++.|..|++||+.|+|+..|..|..+|..
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 46899999999999999999999999999999999988 45677799999999999999999999999874
No 50
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.9e-14 Score=128.51 Aligned_cols=68 Identities=47% Similarity=0.838 Sum_probs=63.6
Q ss_pred ccCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCC--hHHHHHHHHHHHHHcCChhhhhhhcccC
Q 018317 109 KTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPG--AEEAFKAVSKAFQCLSNDESRKKYDITG 176 (358)
Q Consensus 109 ~~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~--a~~~fk~i~~Ay~vLsd~~kR~~YD~~g 176 (358)
...+||+||||+++++..+|+++||++++++|||+++... +.+.|+.|++||++|+|+.+|..||..+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 3579999999999999999999999999999999998554 8999999999999999999999999974
No 51
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=5.6e-14 Score=132.68 Aligned_cols=102 Identities=39% Similarity=0.586 Sum_probs=79.0
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCC--ChHHHHHHHHHHHHHcCChhhhhhhcccCCCCCCCCCCCC
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAP--GAEEAFKAVSKAFQCLSNDESRKKYDITGSDEPVYQPRTH 187 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~--~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~ 187 (358)
..|||+||+|.++|+.++|++||+++++++||||++.+ .++++|+.|.+||++|+|+.+|..||.+|.++.......
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~- 80 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSF- 80 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCC-
Confidence 46999999999999999999999999999999998877 566689999999999999999999999998544321110
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHhhC
Q 018317 188 TRAARGFNGFYDSDIDAEEIFRNFFF 213 (358)
Q Consensus 188 ~~~~~~~~g~~~~~~~~ed~F~~fFg 213 (358)
.+......++.....+.++|.+|||
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~g 105 (306)
T KOG0714|consen 81 -SSSFTSELFYFLFRKPDKDFYEFFG 105 (306)
T ss_pred -CCCCCCCcceeccCchhhhHHHHhC
Confidence 0010111122234677889999998
No 52
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.5e-14 Score=140.25 Aligned_cols=72 Identities=40% Similarity=0.674 Sum_probs=67.7
Q ss_pred HHhhccCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccC
Q 018317 105 RQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITG 176 (358)
Q Consensus 105 ~~~~~~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g 176 (358)
.+..+..|.|.||||+.++++++|||.|||+|...|||||..+.|+|+||.|..||++|+|+++|..||.-.
T Consensus 229 ~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 229 SRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred hhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 345568999999999999999999999999999999999999999999999999999999999999999653
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=9.8e-13 Score=117.87 Aligned_cols=65 Identities=22% Similarity=0.437 Sum_probs=57.4
Q ss_pred CChhhhhCcCCC--CCHHHHHHHHHHHHHhhCCCCCCCCC------hHHHHHHHHHHHHHcCChhhhhhhccc
Q 018317 111 KDFYEILGVERS--CTVEDVRKSYRKLSLKVHPDKNKAPG------AEEAFKAVSKAFQCLSNDESRKKYDIT 175 (358)
Q Consensus 111 ~d~Y~iLgv~~~--a~~~eIkkayrklal~~HPDk~~~~~------a~~~fk~i~~Ay~vLsd~~kR~~YD~~ 175 (358)
.|||+||||++. ++..+|+++||+|++++|||+..... +.+.|+.|++||++|+||.+|..|+..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 489999999996 67899999999999999999976432 456799999999999999999999853
No 54
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.35 E-value=1.2e-12 Score=116.80 Aligned_cols=66 Identities=21% Similarity=0.411 Sum_probs=56.9
Q ss_pred CChhhhhCcCCC--CCHHHHHHHHHHHHHhhCCCCCCCCC----hHHHHHHHHHHHHHcCChhhhhhhcccC
Q 018317 111 KDFYEILGVERS--CTVEDVRKSYRKLSLKVHPDKNKAPG----AEEAFKAVSKAFQCLSNDESRKKYDITG 176 (358)
Q Consensus 111 ~d~Y~iLgv~~~--a~~~eIkkayrklal~~HPDk~~~~~----a~~~fk~i~~Ay~vLsd~~kR~~YD~~g 176 (358)
.|||+||||++. ++..+|+++||+|++++|||++.... +...+..|++||+||+||.+|..|+...
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 589999999996 78999999999999999999986422 2234789999999999999999998643
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9.6e-13 Score=122.24 Aligned_cols=70 Identities=30% Similarity=0.684 Sum_probs=65.8
Q ss_pred ccCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcccCCC
Q 018317 109 KTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDITGSD 178 (358)
Q Consensus 109 ~~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~ 178 (358)
+..|+|+||||.++++..+|.||||+||+++|||+++.+++.+.|+.|..||++|.|.+.|..||-..+.
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldh 100 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDH 100 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcC
Confidence 3579999999999999999999999999999999999999999999999999999999999999976543
No 56
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.29 E-value=5e-12 Score=113.43 Aligned_cols=67 Identities=24% Similarity=0.430 Sum_probs=59.1
Q ss_pred ccCChhhhhCcCCC--CCHHHHHHHHHHHHHhhCCCCCCCCC------hHHHHHHHHHHHHHcCChhhhhhhccc
Q 018317 109 KTKDFYEILGVERS--CTVEDVRKSYRKLSLKVHPDKNKAPG------AEEAFKAVSKAFQCLSNDESRKKYDIT 175 (358)
Q Consensus 109 ~~~d~Y~iLgv~~~--a~~~eIkkayrklal~~HPDk~~~~~------a~~~fk~i~~Ay~vLsd~~kR~~YD~~ 175 (358)
+..|||++|||++. .+..+|+++||+|++++|||++.... +.+.|..||+||+||+||.+|..|+..
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 45799999999996 56899999999999999999986432 456799999999999999999999964
No 57
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.27 E-value=7.6e-12 Score=112.60 Aligned_cols=65 Identities=25% Similarity=0.461 Sum_probs=56.5
Q ss_pred cCChhhhhCcCCC--CCHHHHHHHHHHHHHhhCCCCCCCCC-h-----HHHHHHHHHHHHHcCChhhhhhhcc
Q 018317 110 TKDFYEILGVERS--CTVEDVRKSYRKLSLKVHPDKNKAPG-A-----EEAFKAVSKAFQCLSNDESRKKYDI 174 (358)
Q Consensus 110 ~~d~Y~iLgv~~~--a~~~eIkkayrklal~~HPDk~~~~~-a-----~~~fk~i~~Ay~vLsd~~kR~~YD~ 174 (358)
..|||+||||++. ++..+|+++||+|++++|||++.... + .+.+..||+||++|+||.+|..|+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 4799999999995 67899999999999999999986432 2 2346899999999999999999995
No 58
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.17 E-value=3.7e-11 Score=100.58 Aligned_cols=51 Identities=27% Similarity=0.468 Sum_probs=47.7
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcC
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLS 164 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLs 164 (358)
.++|+||||+++++.++||++||+|++++|||+. ++.+.|++|++||++|.
T Consensus 65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999985 67889999999999984
No 59
>PHA02624 large T antigen; Provisional
Probab=99.15 E-value=7.5e-11 Score=122.58 Aligned_cols=61 Identities=25% Similarity=0.482 Sum_probs=57.2
Q ss_pred cCChhhhhCcCCCC--CHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhc
Q 018317 110 TKDFYEILGVERSC--TVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYD 173 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a--~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD 173 (358)
..++|+||||+++| +.++||+|||++|+++||||+ +++++|+.|++||++|+|+.+|..|.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhcc
Confidence 35899999999999 999999999999999999996 56889999999999999999999994
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.09 E-value=6.7e-11 Score=113.11 Aligned_cols=55 Identities=33% Similarity=0.554 Sum_probs=50.1
Q ss_pred CChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC--------CChHHHHHHHHHHHHHcCC
Q 018317 111 KDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA--------PGAEEAFKAVSKAFQCLSN 165 (358)
Q Consensus 111 ~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~--------~~a~~~fk~i~~Ay~vLsd 165 (358)
.|+|+||||++++|.++||++||+|++++|||++.. +.++++|+.|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999753 2367899999999999975
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.96 E-value=5.1e-10 Score=111.29 Aligned_cols=70 Identities=37% Similarity=0.660 Sum_probs=64.1
Q ss_pred ccCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC------CChHHHHHHHHHHHHHcCChhhhhhhcccCCC
Q 018317 109 KTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA------PGAEEAFKAVSKAFQCLSNDESRKKYDITGSD 178 (358)
Q Consensus 109 ~~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~------~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~ 178 (358)
+.-|+|+||||+.+++..+||++||+|+.|+||||.+. ..-++.++.|++||..|+|...|+.|-.+|.-
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP 171 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP 171 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence 46899999999999999999999999999999999765 24578899999999999999999999999973
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.93 E-value=1.9e-09 Score=96.79 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=56.5
Q ss_pred CChhhhhCcCCC--CCHHHHHHHHHHHHHhhCCCCCCCCCh------HHHHHHHHHHHHHcCChhhhhhhcc
Q 018317 111 KDFYEILGVERS--CTVEDVRKSYRKLSLKVHPDKNKAPGA------EEAFKAVSKAFQCLSNDESRKKYDI 174 (358)
Q Consensus 111 ~d~Y~iLgv~~~--a~~~eIkkayrklal~~HPDk~~~~~a------~~~fk~i~~Ay~vLsd~~kR~~YD~ 174 (358)
.|||++|||++. .+...+++.|+.|.+++|||+....+. .+....||+||.+|+||-+|+.|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 589999999996 789999999999999999999875543 3457899999999999999999954
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.9e-09 Score=97.19 Aligned_cols=64 Identities=44% Similarity=0.673 Sum_probs=58.4
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC--CChHHHHHHHHHHHHHcCChhhhhhhc
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKA--PGAEEAFKAVSKAFQCLSNDESRKKYD 173 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~--~~a~~~fk~i~~Ay~vLsd~~kR~~YD 173 (358)
..|+|+||.|.+..+.++||+.||+|++..|||||++ +.|..+|..|.+||..|-|+..|..-+
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 6799999999999999999999999999999999985 578999999999999999998665443
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.79 E-value=8.3e-09 Score=91.33 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCC------hHHHHHHHHHHHHHcCChhhhhhhcccC
Q 018317 123 CTVEDVRKSYRKLSLKVHPDKNKAPG------AEEAFKAVSKAFQCLSNDESRKKYDITG 176 (358)
Q Consensus 123 a~~~eIkkayrklal~~HPDk~~~~~------a~~~fk~i~~Ay~vLsd~~kR~~YD~~g 176 (358)
.+..+|+++||+|++++|||+..... +.+.|..||+||++|+||.+|..|+...
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 47789999999999999999975432 5578999999999999999999999753
No 65
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.5e-08 Score=95.39 Aligned_cols=72 Identities=32% Similarity=0.501 Sum_probs=63.6
Q ss_pred hccCChhhhhCcCC---CCCHHHHHHHHHHHHHhhCCCCCC---CCChHHHHHHHHHHHHHcCChhhhhhhcccCCCC
Q 018317 108 KKTKDFYEILGVER---SCTVEDVRKSYRKLSLKVHPDKNK---APGAEEAFKAVSKAFQCLSNDESRKKYDITGSDE 179 (358)
Q Consensus 108 ~~~~d~Y~iLgv~~---~a~~~eIkkayrklal~~HPDk~~---~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g~~~ 179 (358)
.+..|+|.+|||+. .+++.+|.++.++.+.+||||+.. +.+..+.|+.|..||+||+|+.+|..||..-.+.
T Consensus 40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~a 117 (379)
T COG5269 40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDA 117 (379)
T ss_pred hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccccc
Confidence 34689999999997 788999999999999999999984 3567899999999999999999999999865543
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=3e-06 Score=91.77 Aligned_cols=54 Identities=41% Similarity=0.589 Sum_probs=46.5
Q ss_pred cCChhhhhCcCC----CCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCC
Q 018317 110 TKDFYEILGVER----SCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSN 165 (358)
Q Consensus 110 ~~d~Y~iLgv~~----~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd 165 (358)
..+-|+||.|+- ....+.||++|+|||.+|||||| |+..+.|..|++||+.|..
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--PEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--PEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHHHHHHH
Confidence 345799999985 23457899999999999999999 6778999999999999984
No 67
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=6.8e-06 Score=76.09 Aligned_cols=57 Identities=28% Similarity=0.599 Sum_probs=52.7
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHH-HcCCh
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQ-CLSND 166 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~-vLsd~ 166 (358)
-+.||.||||..+|+.++++.+|.+|++++|||........+.|..|.+||. ||+..
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999988888899999999999 78654
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0001 Score=60.51 Aligned_cols=49 Identities=27% Similarity=0.432 Sum_probs=42.8
Q ss_pred hhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCCh
Q 018317 115 EILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSND 166 (358)
Q Consensus 115 ~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~ 166 (358)
.||||+++++.+.||.++|++.+..|||+..+| -.-.+||+|+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP---YLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH---HHHHHHHHHHHHHhcc
Confidence 489999999999999999999999999998544 4556799999999754
No 69
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=1e-06 Score=83.10 Aligned_cols=292 Identities=25% Similarity=0.287 Sum_probs=151.4
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhhcC-CCCCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 018317 5 KDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIES-DPNTNPNGPSAEPNSKPSDQSTIRHRGPSTG 83 (358)
Q Consensus 5 kdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
..++.+|+.|+..+... +..+|.+.+.++.+.++.+.. ...+...- ... +... -.+. +.........+. .+
T Consensus 2 ~~d~~~~l~i~~~as~~-~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~-ea~~-~ls~---~~kr~~~d~~~~-~~ 73 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEE-DIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIA-EAYE-VLSD---PKKRKIYDQYGE-EG 73 (306)
T ss_pred cccHHHHhCccccccHH-HHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhh-cccc-ccCC---HHHhhhccccCc-cc
Confidence 56889999999999999 999999999999999997655 22222210 100 0000 0000 000000000000 00
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhccCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHc
Q 018317 84 ASPSASSSTSPAYTEEQIAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCL 163 (358)
Q Consensus 84 ~~~~~~~~~~~~~t~e~~~~~~~~~~~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vL 163 (358)
... .......++.+ ...+.....+.+||++||+....+.. .+.|+ |++..++ .+.|..+..+..+|
T Consensus 74 ~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~-~~~~~~~~~~~~~~ 139 (306)
T KOG0714|consen 74 LKG--GGSFSSSFTSE-LFYFLFRKPDKDFYEFFGVSSPFSGS--KKGYR--------DKNAAPG-EEAFKSEGKAFQSL 139 (306)
T ss_pred ccc--CCCCCCCCCCC-cceeccCchhhhHHHHhCCCCCCccc--cccCC--------ccccccC-cccccccccccccc
Confidence 000 00000000110 22233344578999999988766544 44444 6666666 78889999999999
Q ss_pred CChhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhCCCCCCCCcc-------ccccccCCCCCCCC
Q 018317 164 SNDESRKKYDITGSDEPVYQPRTHTRAARGFNGFYDSDIDAEEIFRNFFFGGMPPARTQ-------FRHFNFGQGVATGT 236 (358)
Q Consensus 164 sd~~kR~~YD~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~ed~F~~fFggg~~~~~~~-------~~~~~~~~~~~~~~ 236 (358)
.++ .|..||..+............ ..... +..++.....++++++...+..... +.......+...+.
T Consensus 140 ~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (306)
T KOG0714|consen 140 YGP-KRKQYDSSGSDRSARQSPPVE---HPLRV-SLEDLYKGESKKMKISRQSFTSNGREGSSRSRYLSISIKPGWKEGT 214 (306)
T ss_pred CCC-cccccccccccccccCCCCcc---CCcce-eHHHhccccceeeecccccccCCcccccCccceeEEeccCCccccc
Confidence 999 999999988654332211100 00000 1223333444555554432211100 00000000000000
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHhhCC---CCCCccccccCCCCceeEeecC-CCceeecCCcccccCCCcchhHHH
Q 018317 237 ADRNGSDGFNLRALIQLLPVILIILLQFLP---SSDPIYALSRSYPYEYKFTTER-GVNFYVKSSKFEQDYPVGSVQRVR 312 (358)
Q Consensus 237 ~~~~~~~~~~~~~~~qllpil~l~~~~~l~---~~~p~ys~~~~~~~~~~r~T~~-~v~yyV~~~~f~~~y~~~~~~~~~ 312 (358)
.......+.. -..++|+.+++++...+ ...+.+.+..+..+.+.+.+.. ++.++|.. .+...++... ...
T Consensus 215 ~~~~~~~~~~---~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~--~~~ 288 (306)
T KOG0714|consen 215 KITFPEEGDE---EPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPT-LDGRSYSLSI--NKD 288 (306)
T ss_pred ceeccccccc---cCCcCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeec-ccCccccCcc--ccc
Confidence 0000000000 00156666666554332 3777888876667888888888 99999983 4555565432 227
Q ss_pred HHHHHHHHHHHHHHHHh
Q 018317 313 LEKQVEKDYFTILAQNC 329 (358)
Q Consensus 313 lE~~Ve~~y~~~l~~~C 329 (358)
++..++..||..+...|
T Consensus 289 ~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 289 LIEPGEEDVIPGEGLPC 305 (306)
T ss_pred ccCCCceeeecCCCCCC
Confidence 88888888887766655
No 70
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00093 Score=58.60 Aligned_cols=68 Identities=25% Similarity=0.517 Sum_probs=54.5
Q ss_pred hhccCChhhhhCcCC--CCCHHHHHHHHHHHHHhhCCCCCCCC------ChHHHHHHHHHHHHHcCChhhhhhhcc
Q 018317 107 IKKTKDFYEILGVER--SCTVEDVRKSYRKLSLKVHPDKNKAP------GAEEAFKAVSKAFQCLSNDESRKKYDI 174 (358)
Q Consensus 107 ~~~~~d~Y~iLgv~~--~a~~~eIkkayrklal~~HPDk~~~~------~a~~~fk~i~~Ay~vLsd~~kR~~YD~ 174 (358)
+....+||.++|... ..+++.++.-|.-...++|||+...+ -|.+....|++||.+|.||-+|+.|=.
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345678999998665 44566677689999999999995432 367779999999999999999999964
No 71
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.61 E-value=0.0054 Score=38.95 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
|+-+..+|..++..|++++|++.+++|++++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 456889999999999999999999999999997
No 72
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.51 E-value=0.0069 Score=38.79 Aligned_cols=33 Identities=27% Similarity=0.565 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
|.-+..+|..++..|++++|+..+.+|++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456889999999999999999999999999996
No 73
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0051 Score=55.26 Aligned_cols=63 Identities=29% Similarity=0.500 Sum_probs=50.2
Q ss_pred HHHHHHhhccCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCC--------ChHHHHHHHHHHHHHc
Q 018317 101 IAIVRQIKKTKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAP--------GAEEAFKAVSKAFQCL 163 (358)
Q Consensus 101 ~~~~~~~~~~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~--------~a~~~fk~i~~Ay~vL 163 (358)
...+.......+.|.+|++....+..+|+++|+++....|||+-... .+.++++.|++||+.+
T Consensus 103 ~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 103 LEEAREQLDREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred HHHHHHcccchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 33333344457999999999999999999999999999999995432 3677788888888753
No 74
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.64 E-value=0.018 Score=59.30 Aligned_cols=43 Identities=44% Similarity=0.635 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCCC--------hHHHHHHHHHHHHHc
Q 018317 121 RSCTVEDVRKSYRKLSLKVHPDKNKAPG--------AEEAFKAVSKAFQCL 163 (358)
Q Consensus 121 ~~a~~~eIkkayrklal~~HPDk~~~~~--------a~~~fk~i~~Ay~vL 163 (358)
.-.+.++|||+|||..|.+||||.+..+ +++.|-.+++||...
T Consensus 398 DLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 398 DLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred hccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 3468899999999999999999987554 445566666676643
No 75
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.80 E-value=0.055 Score=34.33 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
|.-|..+|..+...||+++|++.+.+|++++|.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 445889999999999999999999999999983
No 76
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.79 E-value=0.074 Score=36.36 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
++.+|..++..|++++|++.++++++++|..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 6778999999999999999999999999983
No 77
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.45 E-value=0.046 Score=40.28 Aligned_cols=34 Identities=32% Similarity=0.606 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 7 DALKCFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 7 eA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
.|+-+..+|..++..|++++|+..+.+|++++|+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~ 35 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN 35 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 5778999999999999999999999999999998
No 78
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.033 Score=50.03 Aligned_cols=66 Identities=23% Similarity=0.407 Sum_probs=50.9
Q ss_pred ChhhhhCcCCCC--CHHHHHHHHHHHHHhhCCCCCCCCChH------HHHHHHHHHHHHcCChhhhhhhcccCC
Q 018317 112 DFYEILGVERSC--TVEDVRKSYRKLSLKVHPDKNKAPGAE------EAFKAVSKAFQCLSNDESRKKYDITGS 177 (358)
Q Consensus 112 d~Y~iLgv~~~a--~~~eIkkayrklal~~HPDk~~~~~a~------~~fk~i~~Ay~vLsd~~kR~~YD~~g~ 177 (358)
||+...|..+.+ ..+.++..|+.+.+.+|||+....+.. +.+..++.||.+|.||-+|..|=.--.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 455566666644 445689999999999999998754432 358889999999999999999876433
No 79
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.61 E-value=0.056 Score=39.83 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 018317 5 KDDALKCFKIGKEALESG-DRARAIKFLSKARRLDP 39 (358)
Q Consensus 5 kdeA~rc~~iA~~~~~~g-d~~~A~kf~~kA~~L~P 39 (358)
.+.+.-...+|..++..| ++++|++++++|++|+|
T Consensus 34 p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 34 PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345555777888899999 79999999999999998
No 80
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.60 E-value=0.092 Score=38.46 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CCHHHHHHh
Q 018317 10 KCFKIGKEALESGDRARAIKFLSKARRLDPS-LPVDDIISS 49 (358)
Q Consensus 10 rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt-~~~~~ll~~ 49 (358)
-.+.+|..+++.|++++|++.+.+++..+|+ ..+..|++.
T Consensus 27 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 27 ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3667888888889999999999999988888 445556654
No 81
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.50 E-value=0.25 Score=32.35 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
+..+|.-+.+.||+++|+.++++|+.|...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 578999999999999999999998776544
No 82
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.18 E-value=0.21 Score=34.80 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CHHHHHHh
Q 018317 12 FKIGKEALESGDRARAIKFLSKARRLDPSL---PVDDIISS 49 (358)
Q Consensus 12 ~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~---~~~~ll~~ 49 (358)
+++|+.+++.||.++|+..+++.+.-.+.. ++..||..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 689999999999999999999999643321 25667654
No 83
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=91.92 E-value=0.35 Score=41.44 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=38.5
Q ss_pred hhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChh
Q 018317 114 YEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDE 167 (358)
Q Consensus 114 Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~ 167 (358)
..||||++..+.++|.+.|.+|-...+|++. |+.-.=.+|..|.+.|...-
T Consensus 61 ~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 61 RQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999987 66666678889999886554
No 84
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.78 E-value=0.31 Score=28.37 Aligned_cols=30 Identities=33% Similarity=0.643 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
+..+|..++..|+++.|+..+.++++++|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 567888999999999999999999999986
No 85
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.08 E-value=0.42 Score=29.62 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
...+|..+++.|++++|++.+.+.++.||.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 577899999999999999999999999996
No 86
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.01 E-value=0.64 Score=33.68 Aligned_cols=41 Identities=12% Similarity=0.257 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-HHHHHHhhc
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPSLP-VDDIISSIE 51 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~-~~~ll~~~~ 51 (358)
.--+|..+++.||+++|+++++.++++.|.-. +.+|...++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 44578888999999999999999999999843 566666554
No 87
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.37 E-value=1.2 Score=32.21 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 14 IGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 14 iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
.|..++..|++++|++.++++++.+|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~ 29 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD 29 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 445555555555555555555555554
No 88
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.00 E-value=0.72 Score=44.91 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 4 NKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 4 NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
++.+|++...-..+++++++|.+|+..+.+|+.|+|+.-
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA 115 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA 115 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc
Confidence 688999999999999999999999999999999999943
No 89
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=87.16 E-value=1.4 Score=43.45 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 3 GNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 3 ~NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
.|+-||.-+++.|....++|+.+||.++++.|+.|.|+-
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~ 149 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTN 149 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC
Confidence 467899999999999999999999999999999999993
No 90
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=86.93 E-value=1.1 Score=32.96 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 9 LKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 9 ~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
.-+...|..++..|++.+|++.+.+++++.|+..
T Consensus 30 ~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 30 ELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 3344556667777888888888888888888744
No 91
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=85.83 E-value=0.98 Score=32.70 Aligned_cols=38 Identities=26% Similarity=0.542 Sum_probs=30.7
Q ss_pred CChHHHHHHHHHH---------------HHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 3 GNKDDALKCFKIG---------------KEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 3 ~NkdeA~rc~~iA---------------~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
++-++|+++++.+ ..++..|++++|+..+.++++++|.
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4557777777654 4678899999999999999999997
No 92
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.09 E-value=3.1 Score=26.84 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 9 LKCFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 9 ~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
.-+-.+|..+...|++++|++++.+|+.+.-.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 34667899999999999999999999987644
No 93
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=81.13 E-value=2.9 Score=32.83 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018317 3 GNKDDALKCFKIGKEALESGDRARAIKFLSKARRL 37 (358)
Q Consensus 3 ~NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L 37 (358)
+.-+.|..+|+.|.++=+.|+.+.|+.+|.+++++
T Consensus 3 ~~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 3 GYYKQAFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred hHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999864
No 94
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=78.84 E-value=3.1 Score=30.10 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=22.0
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 18 ALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 18 ~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
+++.|++++|++.+.+++..+|..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~ 24 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN 24 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC
Confidence 478999999999999999999983
No 95
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=78.18 E-value=2 Score=42.27 Aligned_cols=54 Identities=35% Similarity=0.596 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCC-----CCChHHHHHHHHHHHHHcCChhhhhhhcccC
Q 018317 123 CTVEDVRKSYRKLSLKVHPDKNK-----APGAEEAFKAVSKAFQCLSNDESRKKYDITG 176 (358)
Q Consensus 123 a~~~eIkkayrklal~~HPDk~~-----~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~~g 176 (358)
++..+|+.+|+..++..||++.. ....++.|++|.+||.+|.+..+|...|.+-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 56788999999999999999874 2345677999999999999866666666543
No 96
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=77.96 E-value=3.3 Score=41.94 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhhcC
Q 018317 12 FKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIES 52 (358)
Q Consensus 12 ~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~~~ 52 (358)
+.+|.++++.+++.+|++.|+|++.++|. ++++|-.+-+.
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A 300 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQA 300 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHH
Confidence 57888999999999999999999999999 77777655443
No 97
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=77.88 E-value=6.1 Score=32.45 Aligned_cols=43 Identities=30% Similarity=0.418 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHH
Q 018317 5 KDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDII 47 (358)
Q Consensus 5 kdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll 47 (358)
++.|.+.+..+..++..||+.+|.|.+.|+.+.-+.+...-|+
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~ 98 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3678889999999999999999999999999987775555454
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=77.58 E-value=10 Score=38.13 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhhcC
Q 018317 3 GNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIES 52 (358)
Q Consensus 3 ~NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~~~ 52 (358)
+|..|+++-+++..+.+..|++..|+.-+.+|+.++|+ ...++..++.+
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~ 81 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATV 81 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHH
Confidence 57889999999999999999999999999999999999 55556555544
No 99
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=77.41 E-value=4.7 Score=40.13 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 018317 9 LKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIIS 48 (358)
Q Consensus 9 ~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~ 48 (358)
..++..|.+++..|++++|+..+.+|++++|.. +..++.
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~ 41 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYAD 41 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHH
Confidence 357889999999999999999999999999984 333333
No 100
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=77.13 E-value=4 Score=29.12 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
+..+|..++..|++++|++.+.++++++|..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 33 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN 33 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc
Confidence 6788999999999999999999999999985
No 101
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=76.96 E-value=5.6 Score=34.66 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-CHHHHHHhh
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPSL-PVDDIISSI 50 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~-~~~~ll~~~ 50 (358)
+.+.++.|++++..||+.-|..++..++..+|.. ++++|...+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~a 113 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADA 113 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 3568889999999999999999999999999984 355555443
No 102
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=76.57 E-value=2.9 Score=30.68 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=24.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 15 GKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 15 A~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
+.-++..+|+++|++.++++++++|..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~ 28 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD 28 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc
Confidence 456889999999999999999999983
No 103
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.36 E-value=4.4 Score=37.85 Aligned_cols=39 Identities=26% Similarity=0.180 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 4 NKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 4 NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
++++|.++..-..+.|+.|++++|..-|..|+.++|...
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~ 129 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS 129 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc
Confidence 567777777788888888888888888888888888653
No 104
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.97 E-value=5.6 Score=37.20 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhhcC
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIES 52 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~~~ 52 (358)
..+.-....|.+.|+.+.++.|+..|.||+.|.|| -.++|+.+++.
T Consensus 132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAea 177 (271)
T KOG4234|consen 132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEA 177 (271)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHH
Confidence 34555567788899999999999999999999999 55667766654
No 105
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=75.06 E-value=7.6 Score=29.02 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRL 37 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L 37 (358)
+.|..++..|..+=..|++++|+.++.+|+.+
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999988887654
No 106
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=74.21 E-value=4.1 Score=30.42 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLD 38 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~ 38 (358)
|.-...||..+...|++++|+++++||++++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 6667788888899999999999999999875
No 107
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=73.96 E-value=7.8 Score=28.86 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018317 7 DALKCFKIGKEALESGDRARAIKFLSKARRLD 38 (358)
Q Consensus 7 eA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~ 38 (358)
-|.-+..+|..+...|++++|+.+++||+.+.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 35 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIE 35 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34557789999999999999999999999883
No 108
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=72.03 E-value=7.4 Score=39.46 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
+.+.+++++..|+++.|+.++.||++++|.-.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 45667788888999999999999999999864
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=71.83 E-value=7.6 Score=35.28 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 4 NKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 4 NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
|-+.++-|..++..++..|+++.|+..+.+|+++.|..
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~ 106 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN 106 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 33456679999999999999999999999999999983
No 110
>PF13446 RPT: A repeated domain in UCH-protein
Probab=70.81 E-value=5.7 Score=29.19 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.8
Q ss_pred hhhhhCcCCCCCHHHHHHHHHHHHH
Q 018317 113 FYEILGVERSCTVEDVRKSYRKLSL 137 (358)
Q Consensus 113 ~Y~iLgv~~~a~~~eIkkayrklal 137 (358)
-|++|||+++.+++.|-.+|+....
T Consensus 7 Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 7 AYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999998766
No 111
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=69.72 E-value=9.2 Score=31.33 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 13 KIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 13 ~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
.+|..++..|++++|++++.++++++|..
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 34445566666666666666666666654
No 112
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.56 E-value=8 Score=36.66 Aligned_cols=34 Identities=38% Similarity=0.390 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
|.--|.+|..+|..||+..|++-++||++.||..
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~ 68 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY 68 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3445889999999999999999999999999984
No 113
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=68.81 E-value=9.4 Score=32.96 Aligned_cols=34 Identities=32% Similarity=0.326 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRLDP 39 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~P 39 (358)
|.|.+++..|+.+|+.+|+.++...+.||+.+.-
T Consensus 29 eg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~ 62 (132)
T COG1516 29 EGALKFLKRAKEAIEQEDIEEKNESIDKAIDIIT 62 (132)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999998754
No 114
>PRK05685 fliS flagellar protein FliS; Validated
Probab=68.48 E-value=10 Score=32.51 Aligned_cols=40 Identities=30% Similarity=0.377 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhh
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSI 50 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~ 50 (358)
|.|++.++.|+.++..||++++-.-+.||+.+- .+|...+
T Consensus 33 dgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii-----~eL~~sL 72 (132)
T PRK05685 33 EGALSFLAQAKLAIEQGDIEAKGEYLSKAINII-----NGLRNSL 72 (132)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHHHhhc
Confidence 789999999999999999999999999999874 3455554
No 115
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=68.48 E-value=15 Score=31.30 Aligned_cols=41 Identities=17% Similarity=0.359 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhhcC
Q 018317 10 KCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIES 52 (358)
Q Consensus 10 rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~~~ 52 (358)
.-+.+++..+..|+.+.|..-+-+|+.+||.+ .+||..++.
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP--~~LL~i~q~ 105 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQP--AELLQIYQK 105 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH--HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH--HHHHHHHHh
Confidence 45788999999999999999999999999994 478877754
No 116
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=67.74 E-value=8.9 Score=25.82 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018317 9 LKCFKIGKEALESGDRARAIKFLSKARRLD 38 (358)
Q Consensus 9 ~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~ 38 (358)
.-...+++-.+.+++|+.|+..+.+|+.|.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999874
No 117
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.80 E-value=8 Score=40.39 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
+.|........+++.+|+++.|++++.+|+.|+|+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ 147 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD 147 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC
Confidence 34555666666777777777777777777777777
No 118
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.79 E-value=13 Score=35.05 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 5 KDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 5 kdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
|=-+.-.++||+.++..||+++|+++++++...|-...
T Consensus 175 R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg 212 (247)
T PF11817_consen 175 RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG 212 (247)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC
Confidence 33455678999999999999999999999999988754
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=64.10 E-value=15 Score=30.00 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 4 NKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 4 NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
|.+.+..-+.+|..++..|++++|+..+.+++.++|..
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 50 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN 50 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Confidence 34455567889999999999999999999999999973
No 120
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=63.35 E-value=8.8 Score=36.10 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
+++.-++..|..+.+.|+.++|++++.+|++++|..
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~ 179 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD 179 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 345567788889999999999999999999999983
No 121
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=63.12 E-value=9.8 Score=32.06 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
+..+|..++..|++++|++.|.+++.++|..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E 96 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDE 96 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH
Confidence 44566778899999999999999999999965
No 122
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=62.85 E-value=12 Score=31.22 Aligned_cols=32 Identities=38% Similarity=0.509 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRL 37 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L 37 (358)
|.|.++++.|..++..||++++-..+.||+.+
T Consensus 27 d~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~I 58 (122)
T PF02561_consen 27 DGAIEFLKQAKEAIEQGDIEEKNEALQKAQDI 58 (122)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999876
No 123
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=62.46 E-value=10 Score=26.81 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018317 10 KCFKIGKEALESGDRARAIKFLSKARRLDP 39 (358)
Q Consensus 10 rc~~iA~~~~~~gd~~~A~kf~~kA~~L~P 39 (358)
-+..+|..++..+++++|++.+.+++++.|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 65 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDP 65 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 355666666666777777777777776665
No 124
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=62.42 E-value=10 Score=39.16 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 5 KDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 5 kdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
-+.++-|+.++..+++.|++++|+..+++|++++|...
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a 109 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD 109 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence 34567799999999999999999999999999999954
No 125
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=62.23 E-value=16 Score=30.98 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhhc
Q 018317 5 KDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIE 51 (358)
Q Consensus 5 kdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~~ 51 (358)
.|.|++.+..|+.++..||++++-.-+.||+.+- .+|...++
T Consensus 28 ydg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii-----~eL~~~Ld 69 (124)
T TIGR00208 28 YNGCLKFIRLAAQAIENDDIERKNENLIKAQNII-----QELNFTLD 69 (124)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHHHhhcC
Confidence 3789999999999999999999999999999875 24555553
No 126
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=61.66 E-value=13 Score=29.18 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 9 LKCFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 9 ~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
.-....|...+..|++++|++.+.++++.+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 35 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS 35 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 345788999999999999999999999999863
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=61.60 E-value=14 Score=36.74 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-HHHHHHhhc
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPSLP-VDDIISSIE 51 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~-~~~ll~~~~ 51 (358)
.+.+|..++..|+++.|+..+.+|++++|... +..++..|.
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34445566677888888888888888888743 444555553
No 128
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=60.64 E-value=17 Score=28.55 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
...+|..+++.|+++.|++.+.+++.++|..
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 5667888899999999999999999999984
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=60.58 E-value=18 Score=32.90 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-HHHHHHhh
Q 018317 12 FKIGKEALESGDRARAIKFLSKARRLDPSLP-VDDIISSI 50 (358)
Q Consensus 12 ~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~-~~~ll~~~ 50 (358)
..+|..+++.||+++|+..+++++++.|... -.++|..|
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i 187 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESI 187 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 3445556667777777777777777777632 23455444
No 130
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.51 E-value=15 Score=38.56 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=37.8
Q ss_pred ChHHHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhhcC
Q 018317 4 NKDDALKCFK---------------IGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIES 52 (358)
Q Consensus 4 NkdeA~rc~~---------------iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~~~ 52 (358)
+.|||.+|.. +|.++..-|||++-+++|.||++|+|. -+++|+.++..
T Consensus 130 kY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A 192 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASA 192 (606)
T ss_pred cHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHH
Confidence 4578887764 455778889999999999999999998 56667766543
No 131
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=59.71 E-value=6.8 Score=29.90 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 7 DALKCFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 7 eA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
++.-++.+|.+++..|++++|+.++.+ ..++|..
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~ 57 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN 57 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC
Confidence 455677799999999999999999999 7777763
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=59.01 E-value=26 Score=31.71 Aligned_cols=36 Identities=33% Similarity=0.413 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 7 DALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 7 eA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
.+......|..++..||+.+|++.+++.+..+|+.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~ 39 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP 39 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh
Confidence 456788999999999999999999999999999855
No 133
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=58.49 E-value=19 Score=31.36 Aligned_cols=31 Identities=19% Similarity=0.473 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 10 KCFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 10 rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
-+..+|..+...|++++|++.+.+|++++|.
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4455555666677777777777777777775
No 134
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=58.37 E-value=20 Score=38.08 Aligned_cols=33 Identities=36% Similarity=0.388 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
|..+.+.+..++..|++++|++.+.+|+++.|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~ 159 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD 159 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 556677777777777777777777777777775
No 135
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=58.17 E-value=13 Score=31.84 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 9 LKCFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 9 ~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
.-+..+|......|++++|+.++.+|++++|.
T Consensus 59 ~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 59 RAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 33555666666666667777777777766665
No 136
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.92 E-value=18 Score=35.41 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-HHHHHHhhcC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPSLP-VDDIISSIES 52 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~-~~~ll~~~~~ 52 (358)
+..+...++..|++++|+..+.||+.|||.-+ .+.-|..++.
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 34455566777888888888888888888754 3444555543
No 137
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=57.28 E-value=21 Score=27.03 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018317 4 NKDDALKCFKIGKEALESGDRARAIKFLSKARRL 37 (358)
Q Consensus 4 NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L 37 (358)
.-++|..++..|.++=..|+++.|+..+.+|+++
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3578888999999998999999999888887654
No 138
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=57.20 E-value=19 Score=33.97 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=30.1
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCHHHHHHhhcCC
Q 018317 20 ESGDRARAIKFLSKARRLDPSLPVDDIISSIESD 53 (358)
Q Consensus 20 ~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~~~~ 53 (358)
..+++..|+.+|.+|+.|+|.-.++.+|.+|+..
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~ 223 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCGVKKDIERLERR 223 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 4568899999999999999999999999988754
No 139
>PRK11189 lipoprotein NlpI; Provisional
Probab=56.78 E-value=23 Score=33.98 Aligned_cols=37 Identities=22% Similarity=0.116 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHH
Q 018317 9 LKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDD 45 (358)
Q Consensus 9 ~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ 45 (358)
+-+..++..+.+.|++++|+..+.+|++++|...+..
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 3466778889999999999999999999999755443
No 140
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=56.55 E-value=20 Score=27.91 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 5 KDDALKCFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 5 kdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
.++|.-.+.-|...=.+|++++|++++..|++++=.
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 356666666666677789999999999999998754
No 141
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=55.90 E-value=25 Score=35.31 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHHHH---------------HHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 2 DGNKDDALKCFKIGKE---------------ALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 2 e~NkdeA~rc~~iA~~---------------~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
|||-++|++++..+.+ +...||++.|..++.+|.+.+|+..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~ 152 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ 152 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch
Confidence 6788888888776543 4888999999999999999999965
No 142
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=54.63 E-value=24 Score=27.19 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018317 4 NKDDALKCFKIGKEALESGDRARAIKFLSKARRLD 38 (358)
Q Consensus 4 NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~ 38 (358)
|.++|..++..|...-..|+++.|+.++..|+..+
T Consensus 2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45678888888888889999999999999887763
No 143
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=54.57 E-value=25 Score=27.38 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRLD 38 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~ 38 (358)
..|..++..|..+=+.|++++|+.++.+|+.++
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 457788888888889999999999999998765
No 144
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=54.46 E-value=21 Score=31.15 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
+...|..+|+.|++.+|++.+++...-||.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~ 42 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPF 42 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 344444455555555555555555444444
No 145
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=54.41 E-value=31 Score=30.37 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCCHHHHHHhhcC
Q 018317 10 KCFKIGKEALESG-DRARAIKFLSKARRLDPSLPVDDIISSIES 52 (358)
Q Consensus 10 rc~~iA~~~~~~g-d~~~A~kf~~kA~~L~Pt~~~~~ll~~~~~ 52 (358)
..+.+++..+..| +.++|.--+-+|+.+||.+ .+||..++.
T Consensus 92 ~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP--~~LL~iyq~ 133 (148)
T TIGR00985 92 QEVQLGEELMAQGTNVDEGAVHFYNALKVYPQP--QQLLSIYQQ 133 (148)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCH--HHHHHHHHh
Confidence 4578889999999 9999999999999999994 478887764
No 146
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=53.29 E-value=18 Score=30.95 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
....+...+..|++++|+..+.+++.++|..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~ 57 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS 57 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4456888899999999999999999999984
No 147
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=52.69 E-value=30 Score=27.88 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRL 37 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L 37 (358)
.+|..-|..|+.++..||+.+|..++..|...
T Consensus 43 ~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 43 KEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999877
No 148
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=52.16 E-value=25 Score=32.24 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCC
Q 018317 120 ERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSN 165 (358)
Q Consensus 120 ~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd 165 (358)
+++|+.+||++|+.++..+|--| ++.-..|..||+.+.-
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~ILM 39 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAILM 39 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHH
Confidence 47899999999999999888443 4566779999996543
No 149
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=52.09 E-value=44 Score=26.56 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---HH-HHHHhhc
Q 018317 4 NKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP---VD-DIISSIE 51 (358)
Q Consensus 4 NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~---~~-~ll~~~~ 51 (358)
|-++...-+.+|..++..|+++.|+.-+.+.++-+|+-+ ++ .||...+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~ 69 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFE 69 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHH
Confidence 445566788999999999999999999999999999863 33 3555554
No 150
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=51.65 E-value=20 Score=21.43 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 018317 11 CFKIGKEALESGDRARAIKFLS 32 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~ 32 (358)
.+.+|..++..||++.|++.++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 5678899999999999999875
No 151
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=51.12 E-value=30 Score=29.87 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRLDP 39 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~P 39 (358)
..|.-...++..++..|++++|+..+.+|+.+.|
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 66 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI 66 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Confidence 3566667777777777777777777777777744
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=50.87 E-value=37 Score=28.68 Aligned_cols=36 Identities=33% Similarity=0.378 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCH
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPV 43 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~ 43 (358)
+.-.+.+|..++..|++++|+..+.+++.-.|....
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l 83 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL 83 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH
Confidence 345678999999999999999999999998876543
No 153
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=50.70 E-value=37 Score=26.40 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHhhCCCCC
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSK-------ARRLDPSLP 42 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~k-------A~~L~Pt~~ 42 (358)
+.|..++..|.++=+.|++..|+..+.+ +++++|...
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 4688899999999999998877766655 456677643
No 154
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=49.83 E-value=30 Score=26.85 Aligned_cols=32 Identities=19% Similarity=0.089 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRL 37 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L 37 (358)
..|...+..|.+.=..|+++.|+.++.+|+.+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777777888888889999999888877654
No 155
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=49.32 E-value=34 Score=25.86 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRL 37 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L 37 (358)
+.|..++..|..+=..|+++.|+..+..|+.+
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56778888888888889999999888877654
No 156
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=48.73 E-value=29 Score=29.04 Aligned_cols=46 Identities=28% Similarity=0.468 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCC-CC----hHHHHHHHHHHHHHcCCh
Q 018317 121 RSCTVEDVRKSYRKLSLKVHPDKNKA-PG----AEEAFKAVSKAFQCLSND 166 (358)
Q Consensus 121 ~~a~~~eIkkayrklal~~HPDk~~~-~~----a~~~fk~i~~Ay~vLsd~ 166 (358)
+..+..+++.+.|.+-++.|||.... |. .++-++.|+.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 34567789999999999999997642 32 345588888777777654
No 157
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=48.37 E-value=39 Score=29.14 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 10 KCFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 10 rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
-...+|..+...|+++.|++++.+|++++|..
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFL 105 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 34556666777899999999999999998874
No 158
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=47.95 E-value=36 Score=29.31 Aligned_cols=35 Identities=31% Similarity=0.230 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 7 DALKCFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 7 eA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
.+.-...+|..++..|++++|+..+.++++++|..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 64 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD 64 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 46678889999999999999999999999999974
No 159
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=47.20 E-value=71 Score=24.94 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=34.3
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHH
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSK 158 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~ 158 (358)
|.|--++.|+++-++..||+.|-++..+|+.--..++....++|..--.
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~ 50 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVA 50 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHH
Confidence 4556678999999999999998877777765444444445666655433
No 160
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=47.17 E-value=31 Score=30.35 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 7 DALKCFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 7 eA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
.|.+-+..|+.+|..|+.++|++.+.+|..+.-.
T Consensus 1 ~A~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~ 34 (155)
T PF10938_consen 1 RAMRDIQKARLALFQGDTDEAKKLLEDAQGKLDA 34 (155)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999988665
No 161
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.46 E-value=19 Score=37.37 Aligned_cols=34 Identities=32% Similarity=0.287 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 7 DALKCFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 7 eA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
.|+....-|..+|..++++.|+.++.||++|+|+
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn 36 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPN 36 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc
Confidence 3555667788889999999999999999999995
No 162
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=46.13 E-value=26 Score=35.17 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhhc
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIE 51 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~~ 51 (358)
+.-.+-.|+-++..+++++|++.+++++++.|+...--++..+.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~ 371 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADAL 371 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 33445667889999999999999999999999966534555554
No 163
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=45.02 E-value=43 Score=25.53 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRL 37 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L 37 (358)
+.|...+..|.+.-..|+++.|+.++..|+.+
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57888888888888999999998888877654
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=44.98 E-value=32 Score=32.38 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 12 FKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 12 ~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
+.+|..+++.+|++.|+..+++.++++|+.
T Consensus 73 l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 73 LDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 455566666666666666666666666664
No 165
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=44.87 E-value=36 Score=26.32 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRLD 38 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~ 38 (358)
.+|...+..|...-.+|++++|++++..++.++
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 567788888888889999999999999998763
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=44.61 E-value=40 Score=29.34 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
.+|.-....|..++..|++++|+..+++|+++.|..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 68 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP 68 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 456667888889999999999999999999998864
No 167
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=43.59 E-value=46 Score=30.07 Aligned_cols=34 Identities=35% Similarity=0.444 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
+...+..|..++..|+++.|+..+.+++.++|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~ 66 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFS 66 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4456777777777888888888888888887764
No 168
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.37 E-value=32 Score=32.95 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 3 GNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 3 ~NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
++|++|--|.-.|-+.++..|.+.|+.-+++|+.+|-...
T Consensus 68 ~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 68 GSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred CCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999999999999999999998753
No 169
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=43.04 E-value=39 Score=33.82 Aligned_cols=37 Identities=30% Similarity=0.296 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 4 NKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 4 NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
|.+=|.=|+++|..++...|.++|+..+.||+.-+|+
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKK 212 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc
Confidence 4566788999999999999999999999999999998
No 170
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=42.81 E-value=43 Score=34.36 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=41.6
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhhcC
Q 018317 1 MDGNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIES 52 (358)
Q Consensus 1 Me~NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~~~ 52 (358)
|-.|-.|+ .+-.|+.++.+|++..|+.-++-+.++.|+-.+--||..|+.
T Consensus 324 lk~nnaes--~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIee 373 (531)
T COG3898 324 LKPNNAES--SLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEE 373 (531)
T ss_pred cCccchHH--HHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHh
Confidence 33454444 778899999999999999999999999999887778877764
No 171
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=42.69 E-value=55 Score=37.73 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=31.4
Q ss_pred CChHHHHHHHH-----------HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 3 GNKDDALKCFK-----------IGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 3 ~NkdeA~rc~~-----------iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
++.++|+++++ +|..+++.|++++|+..+.++++++|.
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~ 635 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG 635 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34566666554 677889999999999999999999998
No 172
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=41.16 E-value=58 Score=26.49 Aligned_cols=36 Identities=22% Similarity=0.098 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018317 4 NKDDALKCFKIGKEALESGDRARAIKFLSKARRLDP 39 (358)
Q Consensus 4 NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~P 39 (358)
+=.+|.-|.--|.++.+.||+++|...+.+|....-
T Consensus 11 ~aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~ 46 (97)
T cd00215 11 HAGNARSKALEALKAAKEGDFAEAEELLEEANDSLN 46 (97)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 346788888999999999999999999999877543
No 173
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=40.97 E-value=58 Score=26.86 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRLDP 39 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~P 39 (358)
.+|.-|.--|.++.+.||+++|...+.+|....-
T Consensus 18 G~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~ 51 (104)
T PRK09591 18 GNARTEVHEAFAAMREGNFDLAEQKLNQSNEELL 51 (104)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5788888889999999999999999999987543
No 174
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.95 E-value=52 Score=25.94 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
+.-++.+|.-...-|++++|+..+++|+++--...
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 34478888888999999999999999999876543
No 175
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=40.42 E-value=60 Score=26.50 Aligned_cols=36 Identities=22% Similarity=0.077 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018317 4 NKDDALKCFKIGKEALESGDRARAIKFLSKARRLDP 39 (358)
Q Consensus 4 NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~P 39 (358)
|=.+|.-|.--|.++.+.|||++|.+.+.+|....-
T Consensus 13 ~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~ 48 (99)
T TIGR00823 13 YAGDARSKALEALKAAKAGDFAKARALVEQAGMCLN 48 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 346788888899999999999999999999987544
No 176
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=40.16 E-value=56 Score=31.75 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 12 FKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 12 ~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
..++..+...|++++|++++.++++++|...
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 3455666777788888888888877777644
No 177
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=39.98 E-value=52 Score=29.73 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 12 FKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 12 ~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
+.+|..++..|+++.|+..+.++++++|...
T Consensus 74 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 74 LDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 5567788899999999999999999999744
No 178
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=39.62 E-value=45 Score=27.94 Aligned_cols=39 Identities=8% Similarity=0.171 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhhc
Q 018317 13 KIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIE 51 (358)
Q Consensus 13 ~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~~ 51 (358)
+.|+.++..||.-||++..++++...+..+-.-++..++
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~Q 39 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQ 39 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHH
Confidence 368899999999999999999999999865322555544
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=39.20 E-value=53 Score=30.84 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
+......|...+..||+++|++.+++.+..+|...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~ 66 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP 66 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 45577899999999999999999999999999865
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=39.05 E-value=57 Score=24.62 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 018317 12 FKIGKEALESGDRARAIKFLSKA 34 (358)
Q Consensus 12 ~~iA~~~~~~gd~~~A~kf~~kA 34 (358)
.-+|+++++.|++++|++.+.+|
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhcC
Confidence 34599999999999999999986
No 181
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=38.90 E-value=57 Score=28.48 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 12 FKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 12 ~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
|+++-.+++.+++++|+.-+.+=++|+|+.+
T Consensus 51 L~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 51 LDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 5788899999999999999999999999865
No 182
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.78 E-value=50 Score=34.81 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
+-|+.-..-+..+|+.||+..|++.+.+|+..+|+..
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 3355566668899999999999999999999999853
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=38.72 E-value=64 Score=33.98 Aligned_cols=26 Identities=27% Similarity=0.139 Sum_probs=14.9
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCH
Q 018317 18 ALESGDRARAIKFLSKARRLDPSLPV 43 (358)
Q Consensus 18 ~~~~gd~~~A~kf~~kA~~L~Pt~~~ 43 (358)
+...|+.++|+..+.+|++|+|..+.
T Consensus 463 ~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 34455666666666666666666543
No 184
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=38.53 E-value=73 Score=32.00 Aligned_cols=43 Identities=23% Similarity=0.170 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHH
Q 018317 5 KDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDII 47 (358)
Q Consensus 5 kdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll 47 (358)
+..|.+.+..|.-++..||++.|++.+.++.+..|.+....++
T Consensus 81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~ll 123 (409)
T TIGR00540 81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIK 123 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 3568888999999999999999999999999999985544333
No 185
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=38.49 E-value=71 Score=25.85 Aligned_cols=34 Identities=24% Similarity=0.106 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018317 5 KDDALKCFKIGKEALESGDRARAIKFLSKARRLD 38 (358)
Q Consensus 5 kdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~ 38 (358)
=.+|.-|+--|.++.+.||+++|...+.+|..-.
T Consensus 11 aG~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l 44 (96)
T PF02255_consen 11 AGDARSLAMEALKAAREGDFEEAEELLKEADEEL 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3578888889999999999999999999987654
No 186
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=38.19 E-value=51 Score=24.19 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCccc
Q 018317 249 ALIQLLPVILIILLQFLPSSDPIYA 273 (358)
Q Consensus 249 ~~~qllpil~l~~~~~l~~~~p~ys 273 (358)
.|+.|+.-|+++++++|....|.|-
T Consensus 16 ~lLiliis~~f~lI~~l~qq~~~y~ 40 (61)
T PF06692_consen 16 PLLILIISFVFFLITSLGQQGNTYV 40 (61)
T ss_pred HHHHHHHHHHHHHHhhhccCCCeeE
Confidence 4555666666667777778888873
No 187
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=38.07 E-value=29 Score=36.83 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
++.+|..++..|++++|+..+.+|++++|.
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 397 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSE 397 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 444555555555555555555555555554
No 188
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=37.84 E-value=52 Score=28.26 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 12 FKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 12 ~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
..+|..++..|++++|++.+.++++++|..
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 98 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLNPNN 98 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 445667788899999999999999999974
No 189
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.42 E-value=38 Score=35.69 Aligned_cols=45 Identities=22% Similarity=0.236 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHh
Q 018317 4 NKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISS 49 (358)
Q Consensus 4 NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~ 49 (358)
|.++|.--...|.++++-|++..|++.|+++++|+|+ -++..+-+
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RK 432 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRK 432 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHH
Confidence 3456666778899999999999999999999999998 44444433
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=36.95 E-value=51 Score=32.18 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHH
Q 018317 4 NKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDII 47 (358)
Q Consensus 4 NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll 47 (358)
|-.+++-|.-+++.++..|++..|+.-|.+|.+|.|. +++-++
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~ 194 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILL 194 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHH
Confidence 4457888999999999999999999999999999998 443333
No 191
>PRK11189 lipoprotein NlpI; Provisional
Probab=36.66 E-value=45 Score=31.97 Aligned_cols=32 Identities=28% Similarity=0.146 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 9 LKCFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 9 ~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
.-...++..+...|+++.|+..+.+|++++|.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~ 96 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPD 96 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 33444455555555555555555555555554
No 192
>PRK12370 invasion protein regulator; Provisional
Probab=36.15 E-value=44 Score=35.18 Aligned_cols=30 Identities=13% Similarity=0.033 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
...+|..++..|++++|+..+++|++++|.
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~ 370 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPI 370 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 444555566667777777777777777776
No 193
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=35.68 E-value=71 Score=19.61 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHHhh
Q 018317 10 KCFKIGKEALES----GDRARAIKFLSKARRL 37 (358)
Q Consensus 10 rc~~iA~~~~~~----gd~~~A~kf~~kA~~L 37 (358)
-|..+|..++.. .|..+|++++.+|-..
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 377888877643 3999999999999765
No 194
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=35.30 E-value=43 Score=19.79 Aligned_cols=19 Identities=37% Similarity=0.394 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 018317 22 GDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 22 gd~~~A~kf~~kA~~L~Pt 40 (358)
|+.+.|...++++++.+|.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~ 19 (33)
T smart00386 1 GDIERARKIYERALEKFPK 19 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC
Confidence 6789999999999999995
No 195
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.05 E-value=42 Score=31.94 Aligned_cols=30 Identities=37% Similarity=0.654 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 13 KIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 13 ~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
.+.-+++++|+++.|...+.+|++++|.-.
T Consensus 144 N~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 144 NLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred hhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 445589999999999999999999999854
No 196
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=34.97 E-value=2.5e+02 Score=30.34 Aligned_cols=123 Identities=13% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-HHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 018317 6 DDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP-VDDIISSIESDPNTNPNGPSAEPNSKPSDQSTIRHRGPSTGA 84 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
+.+.-...+|..++..|++++|+..+.+|++++|... +...+..+-....
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G----------------------------- 332 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG----------------------------- 332 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhccCCh---hhhhC--cCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHH
Q 018317 85 SPSASSSTSPAYTEEQIAIVRQIKKTKDF---YEILG--VERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKA 159 (358)
Q Consensus 85 ~~~~~~~~~~~~t~e~~~~~~~~~~~~d~---Y~iLg--v~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~A 159 (358)
.+........+.+....+. +-.++ +...-..++-.+.|++ ++..+|+.. .+.-.++-..+.+|
T Consensus 333 ----------~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~-al~~~P~~~-~~~~~ea~~~~~~~ 400 (656)
T PRK15174 333 ----------QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH-YIQARASHL-PQSFEEGLLALDGQ 400 (656)
T ss_pred ----------CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhChhhc-hhhHHHHHHHHHHH
Q ss_pred HHHcCChhhh
Q 018317 160 FQCLSNDESR 169 (358)
Q Consensus 160 y~vLsd~~kR 169 (358)
++.+..+.++
T Consensus 401 ~~~~~~~~~~ 410 (656)
T PRK15174 401 ISAVNLPPER 410 (656)
T ss_pred HHhcCCccch
No 197
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=34.43 E-value=74 Score=25.13 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLD 38 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~ 38 (358)
.+|.+.+|+.|+.+||..-|.-++.-|-.-+
T Consensus 39 ~EKY~~LArDA~ssGDrV~aEny~QHAeHY~ 69 (80)
T PF13763_consen 39 IEKYNQLARDAQSSGDRVLAENYLQHAEHYF 69 (80)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999998876543
No 198
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=34.28 E-value=46 Score=26.08 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhC
Q 018317 15 GKEALESGDRARAIKFLSKARRLD 38 (358)
Q Consensus 15 A~~~~~~gd~~~A~kf~~kA~~L~ 38 (358)
++.+...||+++|.+.-.+|+.+.
T Consensus 44 v~~~~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 44 VRSRYAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred hHHHHHCCCHHHHHHHHHHhHHHH
Confidence 567889999999999999998764
No 199
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=34.18 E-value=58 Score=30.99 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 4 NKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 4 NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
|..+|-+++..|-..++..+++.|+..+++|+.+|-..
T Consensus 70 ~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~ 107 (282)
T PF14938_consen 70 DKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREA 107 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhc
Confidence 45667777777777777778888888888888887554
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=32.53 E-value=83 Score=28.36 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 10 KCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 10 rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
-.+.+|..+++.||++.|+..+..-++.+|+.+
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 368899999999999999999999999999865
No 201
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=32.49 E-value=1.2e+02 Score=29.19 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 7 DALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 7 eA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
-|..+-+-+...|..||+++|++.+++..+.+|.-+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~ 68 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSP 68 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Confidence 366788888888999999999999999999998754
No 202
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=32.22 E-value=1e+02 Score=33.91 Aligned_cols=28 Identities=25% Similarity=0.122 Sum_probs=18.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 14 IGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 14 iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
+|..+...|++++|++.+++|+.++|..
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 3555666677777777777777777763
No 203
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=31.45 E-value=63 Score=34.41 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=29.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCC-HHHHHHhh
Q 018317 14 IGKEALESGDRARAIKFLSKARRLDPSLP-VDDIISSI 50 (358)
Q Consensus 14 iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~-~~~ll~~~ 50 (358)
||-.+...|++++|+.+++||+-|.|... +.+||..+
T Consensus 495 ig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 495 IGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 44556677999999999999999999853 67787765
No 204
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=31.39 E-value=89 Score=35.73 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=16.3
Q ss_pred hcCCHHHHHHHHHHHHhhCCC
Q 018317 20 ESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 20 ~~gd~~~A~kf~~kA~~L~Pt 40 (358)
..|+++.|+..+.+|++++|+
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~ 608 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS 608 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC
Confidence 338888888888888888886
No 205
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=30.92 E-value=66 Score=35.94 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CCHHHHHHhh
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPS-LPVDDIISSI 50 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt-~~~~~ll~~~ 50 (358)
|.-|+.+|++++..|.++.|+.+++|++.+.|. ++++--|+.+
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl 492 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASL 492 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHH
Confidence 446889999999999999999999999999997 3444333333
No 206
>PRK14574 hmsH outer membrane protein; Provisional
Probab=30.46 E-value=1.2e+02 Score=34.06 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=23.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 15 GKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 15 A~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
|..+...|++++|+..++++++++|..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n 135 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTN 135 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 556677799999999999999999984
No 207
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=30.43 E-value=85 Score=36.22 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 13 KIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 13 ~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
.+|..++..|++++|++.+.+|++++|.
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3555566667777777777777777776
No 208
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=30.41 E-value=87 Score=34.42 Aligned_cols=31 Identities=16% Similarity=-0.072 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
...+|...+..|++++|+..+.+++.+.|..
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4567778888999999999999999999985
No 209
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=30.40 E-value=1e+02 Score=25.90 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018317 5 KDDALKCFKIGKEALESGDRARAIKFLSKARRLDP 39 (358)
Q Consensus 5 kdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~P 39 (358)
=.+|.-|.--|.++.+.|||++|...+.+|....-
T Consensus 28 aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~ 62 (115)
T PRK10454 28 SGQARSLAYAALKQAKQGDFAAAKAMMDQSRMALN 62 (115)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 35777788888889999999999999999987543
No 210
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=30.00 E-value=77 Score=24.45 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=3.5
Q ss_pred CCceeecCCcccc
Q 018317 289 GVNFYVKSSKFEQ 301 (358)
Q Consensus 289 ~v~yyV~~~~f~~ 301 (358)
++..||.|.+.++
T Consensus 49 ~~ktYIDP~TYED 61 (75)
T PF14575_consen 49 GVKTYIDPHTYED 61 (75)
T ss_dssp -------GGGSSS
T ss_pred CceeecCcccccC
Confidence 7899999966444
No 211
>PRK12370 invasion protein regulator; Provisional
Probab=29.95 E-value=57 Score=34.34 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=12.7
Q ss_pred cCCHHHHHHHHHHHHhhCCC
Q 018317 21 SGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 21 ~gd~~~A~kf~~kA~~L~Pt 40 (358)
.+++++|+..+.+|++++|.
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred chHHHHHHHHHHHHHhcCCC
Confidence 35566666666666666665
No 212
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=29.83 E-value=47 Score=17.29 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHcC
Q 018317 152 AFKAVSKAFQCLS 164 (358)
Q Consensus 152 ~fk~i~~Ay~vLs 164 (358)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4778888888774
No 213
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=29.72 E-value=2.1e+02 Score=22.38 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=34.3
Q ss_pred cCChhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHH
Q 018317 110 TKDFYEILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKA 155 (358)
Q Consensus 110 ~~d~Y~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~ 155 (358)
|.|--.+-|+.+.++++||..|=.+..+|..--..++....++|..
T Consensus 2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~ 47 (78)
T PF10041_consen 2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDR 47 (78)
T ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHH
Confidence 3444556788999999999999888888876666655556666654
No 214
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=29.50 E-value=77 Score=30.46 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 13 KIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 13 ~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
..++..+..||+..|+.-+.||+++.|+.
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d 133 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTD 133 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCC
Confidence 37788999999999999999999999984
No 215
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=29.49 E-value=1.6e+02 Score=19.27 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHHhhCCC
Q 018317 10 KCFKIGKEALESGDRARAIKF--LSKARRLDPS 40 (358)
Q Consensus 10 rc~~iA~~~~~~gd~~~A~kf--~~kA~~L~Pt 40 (358)
-+..+|......|++++|+.+ +.-+..|+|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 356778889999999999999 5488877764
No 216
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=29.47 E-value=85 Score=33.09 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCC
Q 018317 6 DDALKCFKIGKEALESGD---RARAIKFLSKARRLDPSL 41 (358)
Q Consensus 6 deA~rc~~iA~~~~~~gd---~~~A~kf~~kA~~L~Pt~ 41 (358)
-+|.-|.-.|..++..++ +.+|+.++++|++++|.-
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~ 375 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF 375 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc
Confidence 378899999999987766 889999999999999995
No 217
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=28.56 E-value=83 Score=21.89 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=16.4
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 018317 16 KEALESGDRARAIKFLSKA 34 (358)
Q Consensus 16 ~~~~~~gd~~~A~kf~~kA 34 (358)
...+..||+++|++++.+-
T Consensus 9 ~~~i~~g~~~~a~~~~~~~ 27 (58)
T smart00668 9 RELILKGDWDEALEWLSSL 27 (58)
T ss_pred HHHHHcCCHHHHHHHHHHc
Confidence 5778999999999999654
No 218
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.38 E-value=33 Score=36.84 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 2 DGNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 2 e~NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
+.+++--+-|+.++.++--.+|.+.|+|++++|+.|||...
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa 455 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA 455 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc
Confidence 34455555688888888889999999999999999999743
No 219
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=28.13 E-value=83 Score=29.41 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 13 KIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 13 ~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
.+|..++..|+.++|+.+++++++..|..
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHhccccccccccccccccccccccc
Confidence 45566777799999999999999999983
No 220
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=28.11 E-value=74 Score=30.79 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhh
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSI 50 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~ 50 (358)
+..+|...|..|++++|.+.+.+|+..+|. +.+.|...+
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNli 242 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLI 242 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHH
Confidence 456788999999999999999999999998 455555444
No 221
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.77 E-value=70 Score=34.30 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018317 9 LKCFKIGKEALESGDRARAIKFLSKARRLDP 39 (358)
Q Consensus 9 ~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~P 39 (358)
+-|...|+..+..|+++.|++.+++|++++-
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~ 206 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICR 206 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999977654
No 222
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.70 E-value=1.3e+02 Score=26.33 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhhcC
Q 018317 12 FKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSIES 52 (358)
Q Consensus 12 ~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~~~ 52 (358)
+.+.+..+..||.+++.-.+..|+-+||. ..+||..++.
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgq--paqLL~vlq~ 123 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQ--PAQLLQVLQQ 123 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCC--HHHHHHHHHh
Confidence 67889999999999999999999999998 4478888764
No 223
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.97 E-value=36 Score=35.03 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=31.9
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 1 MDGNKDDALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 1 Me~NkdeA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
|+.++-||+.....+-.+. .|.++|+.++.++++|+|...
T Consensus 198 ld~~n~~al~vrg~~~yy~--~~~~ka~~hf~qal~ldpdh~ 237 (486)
T KOG0550|consen 198 LDATNAEALYVRGLCLYYN--DNADKAINHFQQALRLDPDHQ 237 (486)
T ss_pred cccchhHHHHhcccccccc--cchHHHHHHHhhhhccChhhh
Confidence 4566777777766666554 899999999999999999853
No 224
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=26.90 E-value=1.1e+02 Score=35.04 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=31.1
Q ss_pred CChHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 3 GNKDDALKCFKI--------------GKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 3 ~NkdeA~rc~~i--------------A~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
++.++|+.+++. |..+.+.|++++|+.++.+|++++|..
T Consensus 590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~ 642 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN 642 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 556666666554 445778899999999999999999984
No 225
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=26.80 E-value=54 Score=31.23 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 4 NKDDALKCFKIGKE-ALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 4 NkdeA~rc~~iA~~-~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
|.++|..|++.|.. +...|++..|-+.+.++-+++...
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 44566666666644 445555666666666655555554
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=26.30 E-value=1.1e+02 Score=31.77 Aligned_cols=29 Identities=14% Similarity=-0.007 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018317 10 KCFKIGKEALESGDRARAIKFLSKARRLD 38 (358)
Q Consensus 10 rc~~iA~~~~~~gd~~~A~kf~~kA~~L~ 38 (358)
-+..+|..+...|++++|+..+.+|++++
T Consensus 114 A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 114 AYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 36677788888999999999999999984
No 227
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=25.89 E-value=73 Score=36.30 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-CHHHHHHhh
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPSL-PVDDIISSI 50 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~-~~~~ll~~~ 50 (358)
+.-+++-|+.++...+++.|++-++|+++.+|.. .+.-.|-.+
T Consensus 2 vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvA 45 (1238)
T KOG1127|consen 2 VKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVA 45 (1238)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHH
Confidence 4567889999999999999999999999999984 354444443
No 228
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.88 E-value=61 Score=34.95 Aligned_cols=36 Identities=36% Similarity=0.578 Sum_probs=30.4
Q ss_pred HHHHHHHHHHH---------------HHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 6 DDALKCFKIGK---------------EALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 6 deA~rc~~iA~---------------~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
|.|++|.+.|. +.+...++|+|++.+.+|++++|..
T Consensus 438 ~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 438 DTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 68999998886 3556678999999999999999974
No 229
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.34 E-value=1.1e+02 Score=26.27 Aligned_cols=48 Identities=23% Similarity=0.204 Sum_probs=34.4
Q ss_pred hhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCC
Q 018317 115 EILGVERSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSN 165 (358)
Q Consensus 115 ~iLgv~~~a~~~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd 165 (358)
.||+|+...+.++|.+.|..|-....+.|.. ..-.=.+|-.|-+.|-.
T Consensus 63 qILnV~~~ln~eei~k~yehLFevNdkskGG---SFYLQSKVfRAkErld~ 110 (132)
T KOG3442|consen 63 QILNVKEPLNREEIEKRYEHLFEVNDKSKGG---SFYLQSKVFRAKERLDE 110 (132)
T ss_pred hHhCCCCCCCHHHHHHHHHHHHhccCcccCc---ceeehHHHHHHHHHHHH
Confidence 6999999999999999999998887777653 22222345555555543
No 230
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=25.26 E-value=1.5e+02 Score=18.43 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHhh
Q 018317 23 DRARAIKFLSKARRL 37 (358)
Q Consensus 23 d~~~A~kf~~kA~~L 37 (358)
|.++|+++++||-++
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 689999999999765
No 231
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=24.80 E-value=82 Score=30.25 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
++-+-.++..+.+.|+++.|..-+.+|++|+|...
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p 168 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP 168 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc
Confidence 33344555678889999999999999999999854
No 232
>PF15469 Sec5: Exocyst complex component Sec5
Probab=24.25 E-value=66 Score=28.54 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 16 KEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 16 ~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
+++++.||++.|++.|.||..++-..
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999775
No 233
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=24.13 E-value=1e+02 Score=28.20 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=28.5
Q ss_pred CCChHHHHHHHHHHHHHHh--c-------CCHHHHHHHHHHHHhhCCCCC
Q 018317 2 DGNKDDALKCFKIGKEALE--S-------GDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 2 e~NkdeA~rc~~iA~~~~~--~-------gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
+.|+.+|.-|+-.|...+. - .-+++|..++.||..++|..+
T Consensus 65 ~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 65 NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 4578899999988865322 1 237899999999999999964
No 234
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=24.08 E-value=1.5e+02 Score=23.73 Aligned_cols=71 Identities=13% Similarity=0.271 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHhhccCChhhhhCcCCCCCH-HHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhc
Q 018317 95 AYTEEQIAIVRQIKKTKDFYEILGVERSCTV-EDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYD 173 (358)
Q Consensus 95 ~~t~e~~~~~~~~~~~~d~Y~iLgv~~~a~~-~eIkkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD 173 (358)
.+..+-.+++.++..... -|+++++.. .+|-+.+..+...+++ ...+.+..|.+.| +.||.-+..||
T Consensus 32 ~~~~~~~~l~~~l~~~~~----~g~~p~s~evq~l~~~~~~~~~~~~~------~~~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 32 ELQKEWDELFAELAALME----EGVDPDSPEVQELAERWMELINQFTG------GDPELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp -TTHHHHHHHHHHHHHHH----HT--TT-HHHHHHHHHHHHHHHHSS---------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHH----cCCCcCCHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHH--HcCHHHHhhcc
Confidence 344555555555544322 377777654 4577788888888877 3467899999998 78899899898
Q ss_pred -ccCC
Q 018317 174 -ITGS 177 (358)
Q Consensus 174 -~~g~ 177 (358)
.++.
T Consensus 100 ~~~~~ 104 (118)
T PF07739_consen 100 KKFGP 104 (118)
T ss_dssp -GGST
T ss_pred ccCCH
Confidence 5443
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=24.07 E-value=1.2e+02 Score=31.59 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCHHHHHHhh
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPSLPVDDIISSI 50 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~~~ll~~~ 50 (358)
|.-+...|--.+-+|+.+.|+..+++|++|.|.--+..++..+
T Consensus 372 A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~ 414 (458)
T PRK11906 372 ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKEC 414 (458)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 4445555556677899999999999999999995554555444
No 236
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=23.87 E-value=1.1e+02 Score=30.41 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCH--HHHHHhhc
Q 018317 13 KIGKEALESGDRARAIKFLSKARRLDPSLPV--DDIISSIE 51 (358)
Q Consensus 13 ~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~~--~~ll~~~~ 51 (358)
..|..++++|.+..|+.++.+++.++|..+- ..|+..+.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la 324 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLA 324 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence 3467789999999999999999999998652 34444443
No 237
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.81 E-value=2.1e+02 Score=22.34 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCC
Q 018317 4 NKDDALKCFKIGKEALESGD--RARAIKFLSKARRLDPS 40 (358)
Q Consensus 4 NkdeA~rc~~iA~~~~~~gd--~~~A~kf~~kA~~L~Pt 40 (358)
+.++|...++-....|.+|+ ++.+++.+.++.+|.-.
T Consensus 11 sfEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~ 49 (80)
T PRK00977 11 SFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQ 49 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999997 78999999999988765
No 238
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=23.42 E-value=1.3e+02 Score=25.06 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 018317 9 LKCFKIGKEALESGDRARAIKFLS 32 (358)
Q Consensus 9 ~rc~~iA~~~~~~gd~~~A~kf~~ 32 (358)
+-+...|++.++.|+++.|++++.
T Consensus 71 ~~~~~~~~~~l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 71 ELLEQQAEELLEQGKYEQALQLLD 94 (115)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 348999999999999999999988
No 239
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=23.07 E-value=1.2e+02 Score=28.77 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 018317 8 ALKCFKIGKEALESG-DRARAIKFLSKARRLDP 39 (358)
Q Consensus 8 A~rc~~iA~~~~~~g-d~~~A~kf~~kA~~L~P 39 (358)
|.-|..++...++.+ +++.|.+|+.+|..+..
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~ 67 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILE 67 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 667889999999999 99999999999999953
No 240
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=22.98 E-value=1.3e+02 Score=22.42 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
-...|..+=..||.++|++|+.-+..+++.
T Consensus 11 yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~ 40 (59)
T smart00685 11 YKQAALQAKRAGDEEKARRHLRIAKQFDDA 40 (59)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhHHHH
Confidence 445667788899999999999999877654
No 241
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=22.12 E-value=2e+02 Score=27.79 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
..-.+.+|..++..|++++|++++.+++.++|..
T Consensus 214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 3446778889999999999999999999999874
No 242
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.81 E-value=48 Score=28.06 Aligned_cols=11 Identities=18% Similarity=0.564 Sum_probs=4.8
Q ss_pred CCceeecCCcc
Q 018317 289 GVNFYVKSSKF 299 (358)
Q Consensus 289 ~v~yyV~~~~f 299 (358)
...||=....|
T Consensus 74 ~~g~Yd~~g~~ 84 (130)
T PF12273_consen 74 DPGYYDQQGNF 84 (130)
T ss_pred CCCCCCCCCCC
Confidence 34555443333
No 243
>PF07811 TadE: TadE-like protein; InterPro: IPR012495 The members of this family are similar to a region of the protein product of the bacterial tadE locus (Q9S4A6 from SWISSPROT). In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces []. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria []. All tad loci but TadA have putative transmembrane regions [], and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.
Probab=21.45 E-value=78 Score=20.99 Aligned_cols=16 Identities=31% Similarity=0.762 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhC
Q 018317 250 LIQLLPVILIILLQFL 265 (358)
Q Consensus 250 ~~qllpil~l~~~~~l 265 (358)
+.-++|+++++++.++
T Consensus 7 falv~Pvl~~~~~~~~ 22 (43)
T PF07811_consen 7 FALVLPVLLLLLFGIV 22 (43)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4557888888877654
No 244
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=21.41 E-value=1.2e+02 Score=26.86 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 13 KIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 13 ~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
.++...-..|++.+|+..+.+|..|+|.
T Consensus 74 gLG~~~Q~~g~~~~AI~aY~~A~~L~~d 101 (157)
T PRK15363 74 RLGECCQAQKHWGEAIYAYGRAAQIKID 101 (157)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3444444556666666666666666665
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=21.14 E-value=1.4e+02 Score=28.69 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 11 CFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 11 c~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
.+.+|-.+++.++++.|+..+++=+++||+.+
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 46678889999999999999999999999864
No 246
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.97 E-value=1.3e+02 Score=28.65 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 018317 12 FKIGKEALESGDRARAIKFLSKARRLDPS 40 (358)
Q Consensus 12 ~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt 40 (358)
..+|..++..|++++|+..+.+++..||.
T Consensus 184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 184 YWLGQLNYNKGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34445555556666666666666666654
No 247
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=20.68 E-value=58 Score=20.79 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHH
Q 018317 5 KDDALKCFKIGKEALESGDRARAIK 29 (358)
Q Consensus 5 kdeA~rc~~iA~~~~~~gd~~~A~k 29 (358)
-+.+.-+..+|.-+...||+++|++
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3445557888889999999999973
No 248
>COG4371 Predicted membrane protein [Function unknown]
Probab=20.62 E-value=1.4e+02 Score=28.69 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHhhCCCCCCCCccccccccCCCCCCCCccCCCCCcchHHHHHHHHHHHHHHH
Q 018317 182 YQPRTHTRAARGFNGFYDSDIDAEEIFRNFFFGGMPPARTQFRHFNFGQGVATGTADRNGSDGFNLRALIQLLPVILIIL 261 (358)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~~~~~~ed~F~~fFggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qllpil~l~~ 261 (358)
+..+...+++.++++| +||+++..+..-.+.+|+| +.-++||||++.
T Consensus 68 YS~~gpsGGgY~gg~Y---------------~GGGfgfPfiip~~G~GGG------------------fgGiFgilvf~a 114 (334)
T COG4371 68 YSGGGPSGGGYSGGGY---------------SGGGFGFPFIIPGGGGGGG------------------FGGIFGILVFGA 114 (334)
T ss_pred cCCCCCCCCCCCCCCC---------------CCCCcCcCeEeccCCcCCc------------------cccHHHHHHHHH
Q ss_pred HhhC
Q 018317 262 LQFL 265 (358)
Q Consensus 262 ~~~l 265 (358)
+...
T Consensus 115 ian~ 118 (334)
T COG4371 115 IANG 118 (334)
T ss_pred HHHH
No 249
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=20.58 E-value=1.5e+02 Score=28.31 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 018317 8 ALKCFKIGKEALESGDRARAIKFLSKARRLDPSLP 42 (358)
Q Consensus 8 A~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~Pt~~ 42 (358)
.++..-.|..++..||+++|++++.++++.+|...
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 34455567778889999999999999999999854
No 250
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=20.51 E-value=54 Score=34.11 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=22.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 018317 15 GKEALESGDRARAIKFLSKARRLDPSL 41 (358)
Q Consensus 15 A~~~~~~gd~~~A~kf~~kA~~L~Pt~ 41 (358)
|.++++.+++-.|+.++.||++++|+.
T Consensus 45 a~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 45 ALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred hhhheeechhhhHHHHHHhhhhcCchh
Confidence 456677788888999999999998885
No 251
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=20.45 E-value=1.9e+02 Score=23.68 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 018317 7 DALKCFKIGKEALESGDRARAIKFLSKARRLD 38 (358)
Q Consensus 7 eA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~ 38 (358)
-|...++.|..++..||.+.|=-++.|...|.
T Consensus 37 sa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 37 SANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999998887
No 252
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=20.39 E-value=99 Score=31.49 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHHHHHHHhhC
Q 018317 245 FNLRALIQLLPVILIILLQFL 265 (358)
Q Consensus 245 ~~~~~~~qllpil~l~~~~~l 265 (358)
.-++++|++|.|+|||+.++.
T Consensus 15 iiiSv~LHvlLi~lLi~gs~~ 35 (387)
T PRK09510 15 IIISVVLHIILFALLIWSSFD 35 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 346677887777777765543
No 253
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.22 E-value=1.3e+02 Score=30.13 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 018317 7 DALKCFKIGKEALESGDRARAIKFLSKARRLDP 39 (358)
Q Consensus 7 eA~rc~~iA~~~~~~gd~~~A~kf~~kA~~L~P 39 (358)
.+..||+||+-+++.+|.+.|.-|.++|-=|--
T Consensus 143 kl~l~iriarlyLe~~d~veae~~inRaSil~a 175 (399)
T KOG1497|consen 143 KLLLCIRIARLYLEDDDKVEAEAYINRASILQA 175 (399)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence 467899999999999999999999998855433
No 254
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=20.00 E-value=2.1e+02 Score=20.10 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHcCChhhhhhhcc
Q 018317 129 RKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNDESRKKYDI 174 (358)
Q Consensus 129 kkayrklal~~HPDk~~~~~a~~~fk~i~~Ay~vLsd~~kR~~YD~ 174 (358)
.+.+++..+.-||+. ...+..+.|.+.|..|++.++....+.
T Consensus 12 ~~~~~~~~~~~~~~~----~~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGL----SVGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566677778883 467889999999999998776665553
Done!