Query 018318
Match_columns 358
No_of_seqs 157 out of 1778
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 13:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ou5_A Serine hydroxymethyltra 100.0 2.2E-60 7.6E-65 443.7 28.0 353 4-358 26-380 (490)
2 2a7v_A Serine hydroxymethyltra 100.0 4E-50 1.4E-54 389.7 27.8 348 8-357 31-379 (490)
3 1rv3_A Serine hydroxymethyltra 100.0 2.7E-44 9.4E-49 350.8 32.4 353 3-357 16-369 (483)
4 3h7f_A Serine hydroxymethyltra 100.0 1E-38 3.5E-43 308.6 30.7 325 7-356 21-350 (447)
5 3n0l_A Serine hydroxymethyltra 100.0 2.8E-37 9.5E-42 295.1 32.1 322 10-356 4-325 (417)
6 3ecd_A Serine hydroxymethyltra 100.0 2.6E-36 8.8E-41 289.0 30.0 331 1-355 2-332 (425)
7 3gbx_A Serine hydroxymethyltra 100.0 1.3E-35 4.5E-40 283.6 29.8 321 12-355 11-331 (420)
8 2vi8_A Serine hydroxymethyltra 100.0 2.4E-33 8.2E-38 266.8 31.2 319 11-354 3-321 (405)
9 2dkj_A Serine hydroxymethyltra 100.0 3.8E-33 1.3E-37 265.6 32.0 316 13-352 5-320 (407)
10 3nnk_A Ureidoglycine-glyoxylat 99.9 2.5E-25 8.4E-30 211.7 23.7 290 32-350 13-329 (411)
11 3zrp_A Serine-pyruvate aminotr 99.9 2E-25 6.9E-30 210.1 22.0 288 33-351 3-307 (384)
12 3isl_A Purine catabolism prote 99.9 8.1E-25 2.8E-29 208.4 24.7 290 32-350 11-329 (416)
13 3hvy_A Cystathionine beta-lyas 99.9 3.8E-25 1.3E-29 211.2 21.9 291 14-350 15-339 (427)
14 2dr1_A PH1308 protein, 386AA l 99.9 1.3E-24 4.5E-29 204.8 24.1 287 32-351 20-321 (386)
15 3i16_A Aluminum resistance pro 99.9 4.5E-25 1.6E-29 210.7 20.8 285 25-350 28-339 (427)
16 2huf_A Alanine glyoxylate amin 99.9 1.2E-24 4.2E-29 205.8 22.3 275 32-350 19-322 (393)
17 1vjo_A Alanine--glyoxylate ami 99.9 2.8E-24 9.6E-29 203.4 23.3 273 33-350 35-334 (393)
18 2z9v_A Aspartate aminotransfer 99.9 3.5E-24 1.2E-28 202.6 23.9 271 35-350 12-310 (392)
19 3kgw_A Alanine-glyoxylate amin 99.9 3E-24 1E-28 202.8 22.8 275 32-350 23-327 (393)
20 3f0h_A Aminotransferase; RER07 99.9 3.3E-24 1.1E-28 201.6 22.1 276 30-338 17-303 (376)
21 3f9t_A TDC, L-tyrosine decarbo 99.9 1.1E-23 3.8E-28 198.8 25.6 277 38-351 37-346 (397)
22 1iug_A Putative aspartate amin 99.9 2.2E-24 7.7E-29 200.7 20.2 280 34-351 3-290 (352)
23 2yrr_A Aminotransferase, class 99.9 3.5E-24 1.2E-28 199.2 21.2 283 34-350 2-293 (353)
24 3vp6_A Glutamate decarboxylase 99.9 1.3E-23 4.4E-28 206.0 25.0 259 71-355 129-433 (511)
25 3jzl_A Putative cystathionine 99.9 3.4E-24 1.2E-28 203.9 19.9 267 45-350 32-322 (409)
26 2ch1_A 3-hydroxykynurenine tra 99.9 1.3E-23 4.6E-28 198.8 22.0 275 32-350 18-322 (396)
27 3hbx_A GAD 1, glutamate decarb 99.9 4.4E-23 1.5E-27 201.8 26.0 280 40-351 65-381 (502)
28 1m32_A 2-aminoethylphosphonate 99.9 1.1E-23 3.9E-28 196.7 20.0 289 33-351 5-306 (366)
29 3dzz_A Putative pyridoxal 5'-p 99.9 1.1E-23 3.9E-28 198.9 20.0 285 32-355 28-333 (391)
30 3tqx_A 2-amino-3-ketobutyrate 99.9 8.9E-24 3E-28 200.2 19.2 263 44-351 59-335 (399)
31 3l8a_A METC, putative aminotra 99.9 1.6E-23 5.6E-28 200.4 20.1 287 31-356 61-367 (421)
32 2bkw_A Alanine-glyoxylate amin 99.9 9.5E-23 3.3E-27 192.0 24.4 288 32-350 5-323 (385)
33 1kmj_A Selenocysteine lyase; p 99.9 4.7E-23 1.6E-27 195.4 22.1 282 33-350 24-339 (406)
34 2w8t_A SPT, serine palmitoyltr 99.9 3.8E-23 1.3E-27 198.3 21.6 264 43-351 79-354 (427)
35 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 2.1E-23 7.1E-28 195.7 19.3 274 33-350 9-307 (371)
36 3lvm_A Cysteine desulfurase; s 99.9 3.9E-23 1.3E-27 197.4 20.9 273 31-338 21-310 (423)
37 3cai_A Possible aminotransfera 99.9 3.7E-23 1.3E-27 196.5 20.0 282 33-350 27-342 (406)
38 1gd9_A Aspartate aminotransfer 99.9 1.3E-22 4.4E-27 191.8 23.5 304 9-351 4-326 (389)
39 4hvk_A Probable cysteine desul 99.9 2.6E-23 9E-28 195.2 18.6 266 38-338 7-282 (382)
40 1fc4_A 2-amino-3-ketobutyrate 99.9 3.2E-23 1.1E-27 196.8 18.7 262 44-351 61-336 (401)
41 1bs0_A Protein (8-amino-7-oxon 99.9 5.9E-23 2E-27 193.8 20.2 272 34-350 42-325 (384)
42 4eb5_A Probable cysteine desul 99.9 6.2E-23 2.1E-27 193.1 20.3 278 38-350 7-296 (382)
43 1v2d_A Glutamine aminotransfer 99.9 9.6E-23 3.3E-27 192.2 21.6 297 8-351 3-315 (381)
44 4dq6_A Putative pyridoxal phos 99.9 7.6E-23 2.6E-27 193.2 20.7 284 31-354 32-336 (391)
45 3dr4_A Putative perosamine syn 99.9 1.7E-23 5.8E-28 198.2 16.2 264 32-339 23-295 (391)
46 1u08_A Hypothetical aminotrans 99.9 2.2E-22 7.4E-27 190.1 23.5 303 8-352 8-328 (386)
47 3kki_A CAI-1 autoinducer synth 99.9 2.7E-22 9.2E-27 191.1 24.3 260 44-351 75-343 (409)
48 3ju7_A Putative PLP-dependent 99.9 2.3E-23 7.9E-28 196.7 16.0 244 43-333 14-272 (377)
49 2dgk_A GAD-beta, GADB, glutama 99.9 4E-22 1.4E-26 192.6 24.7 278 41-351 52-369 (452)
50 3ht4_A Aluminum resistance pro 99.9 8.5E-23 2.9E-27 195.7 19.4 260 44-338 37-313 (431)
51 1t3i_A Probable cysteine desul 99.9 1.8E-22 6.1E-27 192.3 21.3 282 33-350 29-347 (420)
52 2o0r_A RV0858C (N-succinyldiam 99.9 3.2E-22 1.1E-26 190.7 22.8 304 9-352 4-325 (411)
53 3qm2_A Phosphoserine aminotran 99.9 5.9E-24 2E-28 200.5 10.6 273 31-334 26-309 (386)
54 4e1o_A HDC, histidine decarbox 99.9 1.3E-22 4.4E-27 197.6 20.1 267 71-352 112-419 (481)
55 3ffr_A Phosphoserine aminotran 99.9 7.9E-23 2.7E-27 190.8 17.8 292 32-351 4-308 (362)
56 3ly1_A Putative histidinol-pho 99.9 4.4E-22 1.5E-26 185.6 22.2 269 32-351 17-300 (354)
57 3fvs_A Kynurenine--oxoglutarat 99.9 3.5E-22 1.2E-26 190.8 22.0 312 6-352 4-346 (422)
58 3vax_A Putative uncharacterize 99.9 3.1E-23 1E-27 196.6 14.3 282 38-350 27-323 (400)
59 1b9h_A AHBA synthase, protein 99.9 4E-22 1.4E-26 188.4 21.8 264 43-352 15-299 (388)
60 3ffh_A Histidinol-phosphate am 99.9 1.8E-21 6.1E-26 182.2 26.0 291 8-351 6-313 (363)
61 1elu_A L-cysteine/L-cystine C- 99.9 4.6E-23 1.6E-27 194.5 15.2 294 33-350 17-336 (390)
62 3euc_A Histidinol-phosphate am 99.9 1.1E-21 3.7E-26 184.0 23.3 270 32-351 31-314 (367)
63 1o4s_A Aspartate aminotransfer 99.9 2.1E-22 7.2E-27 190.6 18.6 301 7-351 13-334 (389)
64 3h14_A Aminotransferase, class 99.9 1.6E-21 5.4E-26 184.5 24.6 300 11-354 7-324 (391)
65 1b5p_A Protein (aspartate amin 99.9 1.1E-21 3.8E-26 185.4 23.4 306 8-354 4-331 (385)
66 3kax_A Aminotransferase, class 99.9 3.7E-22 1.2E-26 188.0 19.9 285 32-355 25-329 (383)
67 1c7n_A Cystalysin; transferase 99.9 4.4E-22 1.5E-26 188.8 20.5 280 32-352 32-334 (399)
68 1eg5_A Aminotransferase; PLP-d 99.9 4.5E-22 1.5E-26 187.2 20.1 264 39-338 9-285 (384)
69 3ke3_A Putative serine-pyruvat 99.9 2.1E-22 7.2E-27 190.1 17.9 248 71-338 30-300 (379)
70 3get_A Histidinol-phosphate am 99.9 8.9E-22 3E-26 184.4 22.0 271 31-352 30-315 (365)
71 2z67_A O-phosphoseryl-tRNA(SEC 99.9 1.4E-22 4.6E-27 196.1 16.4 240 75-350 131-388 (456)
72 3k40_A Aromatic-L-amino-acid d 99.9 2.8E-22 9.6E-27 194.8 18.4 264 71-351 107-411 (475)
73 3e77_A Phosphoserine aminotran 99.9 5.2E-23 1.8E-27 193.1 12.8 270 38-337 19-298 (377)
74 2z61_A Probable aspartate amin 99.9 4.2E-22 1.4E-26 187.1 18.8 296 8-351 2-314 (370)
75 3a2b_A Serine palmitoyltransfe 99.9 1.1E-21 3.6E-26 186.1 21.7 271 34-351 46-331 (398)
76 3mad_A Sphingosine-1-phosphate 99.9 1.7E-21 5.7E-26 191.3 23.5 248 73-350 135-413 (514)
77 3mc6_A Sphingosine-1-phosphate 99.9 5.9E-22 2E-26 193.6 19.7 274 44-349 77-382 (497)
78 3e2y_A Kynurenine-oxoglutarate 99.9 8.8E-22 3E-26 187.3 20.3 309 9-352 2-339 (410)
79 1j32_A Aspartate aminotransfer 99.9 2.1E-21 7.2E-26 183.4 22.7 281 31-351 30-329 (388)
80 1o69_A Aminotransferase; struc 99.9 1.6E-21 5.6E-26 184.9 21.9 263 41-351 8-288 (394)
81 2okj_A Glutamate decarboxylase 99.9 2.4E-21 8.1E-26 189.8 23.7 239 73-338 128-412 (504)
82 1yiz_A Kynurenine aminotransfe 99.9 4.1E-21 1.4E-25 184.0 24.5 304 9-352 16-354 (429)
83 2fnu_A Aminotransferase; prote 99.9 5.1E-22 1.7E-26 186.5 17.9 263 39-351 7-291 (375)
84 2x5d_A Probable aminotransfera 99.9 1.1E-21 3.9E-26 186.9 20.3 305 8-351 10-336 (412)
85 3nyt_A Aminotransferase WBPE; 99.9 8.4E-23 2.9E-27 191.9 12.0 247 41-337 12-271 (367)
86 1mdo_A ARNB aminotransferase; 99.9 9.9E-22 3.4E-26 185.9 19.2 258 42-351 17-304 (393)
87 2jis_A Cysteine sulfinic acid 99.9 2.8E-21 9.4E-26 189.8 23.1 241 72-339 143-428 (515)
88 1d2f_A MALY protein; aminotran 99.9 2.8E-21 9.5E-26 182.8 22.1 281 32-352 29-330 (390)
89 3m5u_A Phosphoserine aminotran 99.9 1.6E-22 5.4E-27 189.1 13.1 270 31-337 4-287 (361)
90 2o1b_A Aminotransferase, class 99.9 6.1E-22 2.1E-26 188.5 17.4 305 9-351 23-344 (404)
91 3fdb_A Beta C-S lyase, putativ 99.9 3.2E-21 1.1E-25 181.2 21.8 280 31-355 23-321 (377)
92 2c81_A Glutamine-2-deoxy-scyll 99.9 1.1E-21 3.8E-26 187.4 18.7 261 40-338 11-293 (418)
93 3nra_A Aspartate aminotransfer 99.9 4.6E-22 1.6E-26 188.9 15.9 284 34-354 42-348 (407)
94 2dou_A Probable N-succinyldiam 99.9 2.7E-21 9.2E-26 182.0 20.7 279 32-351 26-320 (376)
95 2gb3_A Aspartate aminotransfer 99.9 1.2E-21 4E-26 186.8 18.2 280 31-351 43-336 (409)
96 3e9k_A Kynureninase; kynurenin 99.9 1.2E-22 4.2E-27 196.8 11.2 254 81-351 115-408 (465)
97 3b8x_A WBDK, pyridoxamine 5-ph 99.9 6.5E-21 2.2E-25 180.4 22.8 263 38-351 8-311 (390)
98 3a9z_A Selenocysteine lyase; P 99.9 6.3E-22 2.2E-26 189.7 15.6 278 33-337 19-331 (432)
99 3frk_A QDTB; aminotransferase, 99.9 1.7E-22 5.7E-27 190.1 11.3 246 42-336 14-271 (373)
100 3g0t_A Putative aminotransfera 99.9 5.6E-21 1.9E-25 183.3 21.7 284 31-351 44-379 (437)
101 3dyd_A Tyrosine aminotransfera 99.9 4.4E-21 1.5E-25 183.9 20.9 283 33-351 56-362 (427)
102 2qma_A Diaminobutyrate-pyruvat 99.9 5.6E-21 1.9E-25 186.8 21.7 277 41-352 110-433 (497)
103 3b46_A Aminotransferase BNA3; 99.9 3.7E-21 1.3E-25 185.5 19.7 301 15-352 33-369 (447)
104 1xi9_A Putative transaminase; 99.9 2.3E-21 7.9E-26 184.5 17.9 304 9-351 13-342 (406)
105 1qz9_A Kynureninase; kynurenin 99.9 2E-21 6.8E-26 185.2 17.1 282 39-350 36-349 (416)
106 1wyu_B Glycine dehydrogenase s 99.9 3.9E-20 1.3E-24 179.7 26.4 280 43-350 78-381 (474)
107 2c0r_A PSAT, phosphoserine ami 99.9 1.3E-21 4.3E-26 183.3 15.2 287 32-350 4-304 (362)
108 3ele_A Amino transferase; RER0 99.9 6.1E-21 2.1E-25 180.8 19.9 281 32-351 36-341 (398)
109 3jtx_A Aminotransferase; NP_28 99.9 1.4E-20 4.9E-25 178.1 21.8 298 11-352 5-335 (396)
110 1v72_A Aldolase; PLP-dependent 99.9 1.4E-20 4.9E-25 175.2 21.5 273 33-350 9-301 (356)
111 2bwn_A 5-aminolevulinate synth 99.9 1.2E-20 4.1E-25 179.0 21.1 264 43-351 61-338 (401)
112 2zc0_A Alanine glyoxylate tran 99.9 2.5E-20 8.6E-25 177.1 23.0 304 6-351 5-342 (407)
113 1js3_A DDC;, DOPA decarboxylas 99.9 5.4E-21 1.8E-25 186.3 18.5 273 44-350 87-413 (486)
114 3p1t_A Putative histidinol-pho 99.9 3.6E-20 1.2E-24 171.4 23.2 263 30-350 15-284 (337)
115 2aeu_A Hypothetical protein MJ 99.9 2.4E-20 8.3E-25 175.8 22.4 262 33-350 30-306 (374)
116 1jg8_A L-ALLO-threonine aldola 99.9 3.7E-21 1.3E-25 178.9 16.3 270 34-351 6-291 (347)
117 2oga_A Transaminase; PLP-depen 99.9 2.6E-21 9E-26 183.7 15.6 253 32-337 31-300 (399)
118 2po3_A 4-dehydrase; external a 99.9 6E-21 2.1E-25 182.7 18.2 265 36-351 21-304 (424)
119 2zyj_A Alpha-aminodipate amino 99.9 6.4E-21 2.2E-25 180.8 18.2 305 1-351 1-332 (397)
120 3cq5_A Histidinol-phosphate am 99.9 9.1E-20 3.1E-24 171.2 25.8 271 34-350 33-317 (369)
121 2vyc_A Biodegradative arginine 99.9 1.2E-20 4E-25 192.3 21.0 226 82-333 210-466 (755)
122 3piu_A 1-aminocyclopropane-1-c 99.9 1.5E-20 5.3E-25 180.4 20.4 286 34-352 41-367 (435)
123 1c4k_A Protein (ornithine deca 99.9 6.6E-21 2.3E-25 192.6 18.1 237 82-338 178-446 (730)
124 3pj0_A LMO0305 protein; struct 99.9 3.5E-21 1.2E-25 179.9 14.8 272 30-352 12-298 (359)
125 3n75_A LDC, lysine decarboxyla 99.9 1.1E-20 3.6E-25 189.8 19.1 223 74-332 196-442 (715)
126 1bw0_A TAT, protein (tyrosine 99.9 2.1E-20 7.1E-25 178.2 19.4 284 32-351 34-351 (416)
127 1qgn_A Protein (cystathionine 99.9 6.5E-20 2.2E-24 176.3 22.7 217 72-337 113-338 (445)
128 2fq6_A Cystathionine beta-lyas 99.9 1.5E-20 5.2E-25 179.3 18.0 220 62-332 73-300 (415)
129 3ndn_A O-succinylhomoserine su 99.9 3.6E-20 1.2E-24 176.8 20.6 217 71-335 79-302 (414)
130 1iay_A ACC synthase 2, 1-amino 99.9 8.3E-20 2.8E-24 174.9 22.8 281 33-352 38-362 (428)
131 3ri6_A O-acetylhomoserine sulf 99.8 4.1E-20 1.4E-24 177.0 19.8 231 71-335 80-323 (430)
132 1gc0_A Methionine gamma-lyase; 99.8 2.6E-20 8.8E-25 177.0 18.2 249 33-332 29-283 (398)
133 3uwc_A Nucleotide-sugar aminot 99.8 6.1E-21 2.1E-25 179.2 13.7 251 36-337 11-275 (374)
134 3op7_A Aminotransferase class 99.8 6.2E-20 2.1E-24 172.5 20.1 234 84-351 70-314 (375)
135 3hdo_A Histidinol-phosphate am 99.8 7.1E-20 2.4E-24 171.3 20.3 264 32-351 27-301 (360)
136 3ezs_A Aminotransferase ASPB; 99.8 1.4E-19 4.8E-24 170.0 22.3 286 16-351 5-317 (376)
137 3lws_A Aromatic amino acid bet 99.8 2.2E-20 7.5E-25 174.4 16.3 273 33-352 12-296 (357)
138 1svv_A Threonine aldolase; str 99.8 6.6E-20 2.2E-24 170.8 19.4 272 33-350 15-304 (359)
139 3qgu_A LL-diaminopimelate amin 99.8 7.5E-20 2.6E-24 176.3 19.9 284 32-351 70-382 (449)
140 3aow_A Putative uncharacterize 99.8 1.1E-19 3.8E-24 175.2 20.7 300 10-351 56-384 (448)
141 1vp4_A Aminotransferase, putat 99.8 3.8E-20 1.3E-24 177.2 17.2 279 32-351 44-357 (425)
142 3ei9_A LL-diaminopimelate amin 99.8 2.2E-19 7.5E-24 172.2 21.5 288 32-351 57-370 (432)
143 3tcm_A Alanine aminotransferas 99.8 4.9E-19 1.7E-23 173.1 24.0 271 43-351 107-422 (500)
144 3qhx_A Cystathionine gamma-syn 99.8 1.1E-19 3.6E-24 172.4 18.7 214 71-332 64-283 (392)
145 1e5e_A MGL, methionine gamma-l 99.8 1.7E-19 5.8E-24 171.7 19.7 215 71-333 60-282 (404)
146 1lc5_A COBD, L-threonine-O-3-p 99.8 7.1E-19 2.4E-23 164.7 22.9 265 32-351 25-305 (364)
147 3rq1_A Aminotransferase class 99.8 1.9E-19 6.6E-24 171.7 19.1 282 32-350 39-365 (418)
148 2x3l_A ORN/Lys/Arg decarboxyla 99.8 3.5E-20 1.2E-24 178.7 13.9 232 82-351 62-301 (446)
149 2rfv_A Methionine gamma-lyase; 99.8 1.5E-19 5.3E-24 171.5 18.2 243 39-333 34-283 (398)
150 2ez2_A Beta-tyrosinase, tyrosi 99.8 7E-19 2.4E-23 169.8 22.7 259 42-351 55-350 (456)
151 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.8 2.8E-19 9.5E-24 171.9 19.5 187 39-259 37-235 (437)
152 3ftb_A Histidinol-phosphate am 99.8 6.1E-19 2.1E-23 164.6 21.3 264 31-351 26-305 (361)
153 3t18_A Aminotransferase class 99.8 1.3E-19 4.4E-24 172.7 16.7 282 32-350 38-363 (413)
154 1w23_A Phosphoserine aminotran 99.8 3.3E-20 1.1E-24 173.2 11.1 284 32-351 3-304 (360)
155 4f4e_A Aromatic-amino-acid ami 99.8 2.4E-19 8.4E-24 171.3 17.3 311 8-350 24-376 (420)
156 3cog_A Cystathionine gamma-lya 99.8 2.6E-19 9E-24 170.3 16.9 212 72-332 66-284 (403)
157 3nmy_A Xometc, cystathionine g 99.8 2.5E-19 8.7E-24 170.2 16.6 220 62-332 58-285 (400)
158 2x5f_A Aspartate_tyrosine_phen 99.8 3.9E-19 1.3E-23 170.3 17.8 283 31-351 47-376 (430)
159 1fg7_A Histidinol phosphate am 99.8 1.2E-18 4.1E-23 162.9 19.3 228 83-350 64-304 (356)
160 2r2n_A Kynurenine/alpha-aminoa 99.8 6.7E-18 2.3E-22 161.6 24.9 245 77-352 82-362 (425)
161 3acz_A Methionine gamma-lyase; 99.8 6E-19 2E-23 167.1 17.2 214 72-333 58-277 (389)
162 2cb1_A O-acetyl homoserine sul 99.8 6.8E-18 2.3E-22 161.0 24.1 231 73-337 56-306 (412)
163 3ihj_A Alanine aminotransferas 99.8 1.4E-18 4.9E-23 169.7 19.3 269 43-351 102-421 (498)
164 1pff_A Methionine gamma-lyase; 99.8 1.2E-18 4.1E-23 160.9 17.5 207 83-332 4-217 (331)
165 3if2_A Aminotransferase; YP_26 99.8 1E-18 3.6E-23 167.9 17.4 256 75-355 85-377 (444)
166 3bc8_A O-phosphoseryl-tRNA(SEC 99.8 1.7E-19 5.8E-24 171.4 11.6 239 71-338 92-347 (450)
167 2ctz_A O-acetyl-L-homoserine s 99.8 9.2E-19 3.2E-23 167.5 16.3 156 73-256 58-221 (421)
168 1ax4_A Tryptophanase; tryptoph 99.8 9.2E-19 3.1E-23 169.4 16.5 240 73-350 76-359 (467)
169 1cs1_A CGS, protein (cystathio 99.8 2.3E-18 7.9E-23 162.7 18.9 212 73-332 52-269 (386)
170 3b1d_A Betac-S lyase; HET: PLP 99.7 4.8E-21 1.6E-25 181.4 0.0 281 32-352 32-334 (392)
171 3asa_A LL-diaminopimelate amin 99.8 1E-17 3.4E-22 159.0 22.4 274 32-350 34-333 (400)
172 3fsl_A Aromatic-amino-acid ami 99.8 7E-19 2.4E-23 166.4 14.3 307 12-350 5-354 (397)
173 1n8p_A Cystathionine gamma-lya 99.8 2.3E-18 7.8E-23 163.3 17.6 206 82-333 60-275 (393)
174 1yaa_A Aspartate aminotransfer 99.8 1.1E-18 3.9E-23 166.1 15.6 306 9-350 5-365 (412)
175 3hl2_A O-phosphoseryl-tRNA(SEC 99.8 7.5E-19 2.6E-23 165.1 12.9 231 78-338 118-365 (501)
176 1uu1_A Histidinol-phosphate am 99.8 6.1E-18 2.1E-22 156.6 18.9 258 32-351 20-289 (335)
177 1ajs_A Aspartate aminotransfer 99.8 5E-18 1.7E-22 161.6 18.2 305 9-350 6-365 (412)
178 1ibj_A CBL, cystathionine beta 99.8 3.9E-18 1.3E-22 164.9 17.5 160 71-259 131-296 (464)
179 3ez1_A Aminotransferase MOCR f 99.8 1.7E-17 5.8E-22 158.5 19.5 299 10-352 5-354 (423)
180 7aat_A Aspartate aminotransfer 99.8 8E-18 2.7E-22 159.5 16.9 305 12-350 7-357 (401)
181 2oqx_A Tryptophanase; lyase, p 99.8 4.5E-18 1.6E-22 164.5 15.2 265 45-351 53-361 (467)
182 3ruy_A Ornithine aminotransfer 99.8 2.6E-17 8.8E-22 155.6 19.9 261 43-350 53-341 (392)
183 3f6t_A Aspartate aminotransfer 99.8 2E-17 6.8E-22 162.8 19.6 285 42-351 115-450 (533)
184 2ay1_A Aroat, aromatic amino a 99.8 3.2E-18 1.1E-22 161.8 13.2 300 11-350 4-350 (394)
185 1wyu_A Glycine dehydrogenase ( 99.8 5.7E-18 2E-22 162.8 14.7 237 75-338 106-370 (438)
186 2fyf_A PSAT, phosphoserine ami 99.8 4.4E-18 1.5E-22 161.3 13.4 268 32-350 40-339 (398)
187 3ppl_A Aspartate aminotransfer 99.8 2.5E-17 8.4E-22 157.6 18.2 235 83-352 84-359 (427)
188 4eu1_A Mitochondrial aspartate 99.8 1.6E-17 5.6E-22 157.9 16.8 304 8-350 16-365 (409)
189 2q7w_A Aspartate aminotransfer 99.8 5E-18 1.7E-22 160.5 13.1 303 12-350 5-353 (396)
190 3fkd_A L-threonine-O-3-phospha 99.8 2E-17 6.7E-22 154.0 16.7 259 31-351 15-285 (350)
191 3g7q_A Valine-pyruvate aminotr 99.7 9.8E-18 3.4E-22 159.6 14.8 252 75-355 77-351 (417)
192 2eh6_A Acoat, acetylornithine 99.7 6.5E-17 2.2E-21 151.7 19.8 254 43-351 45-326 (375)
193 3d6k_A Putative aminotransfera 99.7 1.7E-17 6E-22 158.5 16.0 295 12-351 14-356 (422)
194 3k7y_A Aspartate aminotransfer 99.7 1.1E-16 3.6E-21 152.3 20.4 306 10-351 6-361 (405)
195 1vef_A Acetylornithine/acetyl- 99.7 3.4E-17 1.2E-21 154.9 16.7 266 42-351 61-344 (395)
196 3meb_A Aspartate aminotransfer 99.7 5.6E-17 1.9E-21 156.4 18.4 304 10-350 26-397 (448)
197 2oat_A Ornithine aminotransfer 99.7 1.1E-16 3.8E-21 153.8 19.2 259 43-351 93-383 (439)
198 4adb_A Succinylornithine trans 99.7 1.2E-16 4.1E-21 151.5 18.2 255 44-351 57-344 (406)
199 1s0a_A Adenosylmethionine-8-am 99.7 6.5E-16 2.2E-20 147.9 22.8 274 43-351 60-371 (429)
200 1z7d_A Ornithine aminotransfer 99.7 3.2E-16 1.1E-20 150.4 19.4 260 43-352 82-375 (433)
201 3a8u_X Omega-amino acid--pyruv 99.7 5.1E-16 1.7E-20 149.5 18.4 267 43-352 67-390 (449)
202 1sff_A 4-aminobutyrate aminotr 99.7 7.6E-16 2.6E-20 147.0 18.5 268 43-351 58-360 (426)
203 2pb2_A Acetylornithine/succiny 99.7 6.2E-16 2.1E-20 147.7 16.3 258 43-351 74-362 (420)
204 2ord_A Acoat, acetylornithine 99.7 5.5E-16 1.9E-20 146.7 15.6 256 43-351 57-343 (397)
205 2eo5_A 419AA long hypothetical 99.7 3.3E-15 1.1E-19 142.6 20.2 264 44-351 61-364 (419)
206 3nx3_A Acoat, acetylornithine 99.7 7.8E-15 2.7E-19 138.7 21.5 266 33-351 38-341 (395)
207 3i4j_A Aminotransferase, class 99.7 6.4E-15 2.2E-19 140.9 20.8 264 44-350 47-357 (430)
208 3dxv_A Alpha-amino-epsilon-cap 99.7 8.8E-15 3E-19 140.4 21.4 248 43-332 60-339 (439)
209 3fq8_A Glutamate-1-semialdehyd 99.6 1.7E-14 5.8E-19 137.9 22.7 262 43-351 69-362 (427)
210 2zy4_A L-aspartate beta-decarb 99.6 2.1E-15 7.2E-20 148.7 16.7 224 10-259 72-332 (546)
211 2epj_A Glutamate-1-semialdehyd 99.6 8E-15 2.7E-19 140.5 19.6 264 43-351 73-366 (434)
212 2e7u_A Glutamate-1-semialdehyd 99.6 1.6E-14 5.6E-19 137.9 20.1 265 43-352 69-363 (424)
213 3l44_A Glutamate-1-semialdehyd 99.6 4.1E-14 1.4E-18 135.5 22.0 260 43-351 72-365 (434)
214 3n5m_A Adenosylmethionine-8-am 99.6 6.7E-14 2.3E-18 134.8 23.6 254 44-332 67-361 (452)
215 3tfu_A Adenosylmethionine-8-am 99.6 1.1E-14 3.8E-19 140.6 17.9 271 44-351 93-400 (457)
216 2cy8_A D-phgat, D-phenylglycin 99.6 1.5E-14 5.2E-19 139.4 18.0 262 43-351 74-366 (453)
217 4e77_A Glutamate-1-semialdehyd 99.6 8.6E-14 3E-18 133.1 23.1 265 43-351 70-363 (429)
218 1zod_A DGD, 2,2-dialkylglycine 99.6 2.9E-14 9.9E-19 136.5 19.4 269 43-351 60-366 (433)
219 3gju_A Putative aminotransfera 99.6 7.1E-14 2.4E-18 135.0 21.6 254 44-329 69-365 (460)
220 3k28_A Glutamate-1-semialdehyd 99.6 2.8E-14 9.7E-19 136.5 18.6 242 43-332 70-340 (429)
221 3dod_A Adenosylmethionine-8-am 99.6 9.7E-14 3.3E-18 133.6 22.4 266 44-351 62-379 (448)
222 4a6r_A Omega transaminase; tra 99.6 2.5E-14 8.5E-19 138.2 16.3 252 44-329 68-360 (459)
223 3i5t_A Aminotransferase; pyrid 99.6 3.2E-13 1.1E-17 131.0 22.9 256 43-332 71-369 (476)
224 3hmu_A Aminotransferase, class 99.6 7.1E-14 2.4E-18 135.5 17.1 249 44-332 73-366 (472)
225 4h51_A Aspartate aminotransfer 99.6 6.2E-14 2.1E-18 133.5 16.2 294 12-334 24-353 (420)
226 4ffc_A 4-aminobutyrate aminotr 99.5 2.6E-13 8.7E-18 130.9 19.0 271 44-350 82-385 (453)
227 3oks_A 4-aminobutyrate transam 99.5 2.4E-13 8.2E-18 131.0 18.4 272 44-350 79-387 (451)
228 2cjg_A L-lysine-epsilon aminot 99.5 1.5E-13 5.2E-18 132.3 16.6 261 43-351 71-394 (449)
229 3bwn_A AT1G70560, L-tryptophan 99.4 7.5E-13 2.5E-17 125.1 13.6 191 101-337 94-307 (391)
230 4ao9_A Beta-phenylalanine amin 99.4 7.1E-12 2.4E-16 120.0 19.3 241 44-331 105-360 (454)
231 2hox_A ALLIIN lyase 1; cystein 99.4 2E-13 6.8E-18 130.7 7.8 268 33-351 58-369 (427)
232 2yky_A Beta-transaminase; tran 99.1 2.3E-14 7.8E-19 138.1 0.0 250 31-332 100-375 (465)
233 1ohv_A 4-aminobutyrate aminotr 99.4 1.7E-11 5.6E-16 118.8 17.1 245 44-332 81-394 (472)
234 4atq_A 4-aminobutyrate transam 99.0 3E-08 1E-12 95.1 22.2 255 44-331 82-364 (456)
235 4e3q_A Pyruvate transaminase; 98.8 1.4E-07 4.7E-12 90.9 17.4 253 44-332 85-383 (473)
236 4a0g_A Adenosylmethionine-8-am 98.4 2.1E-06 7.1E-11 88.2 12.3 85 171-259 577-681 (831)
237 2yxb_A Coenzyme B12-dependent 59.4 13 0.00045 29.4 5.0 43 167-209 55-97 (161)
238 1y80_A Predicted cobalamin bin 51.3 31 0.001 28.4 6.2 58 154-216 117-178 (210)
239 3ghf_A Septum site-determining 50.9 27 0.00093 26.1 5.2 47 167-213 24-78 (120)
240 1xrs_B D-lysine 5,6-aminomutas 50.7 49 0.0017 28.5 7.5 59 153-216 157-222 (262)
241 1ccw_A Protein (glutamate muta 43.2 23 0.00077 27.1 3.8 51 154-209 32-82 (137)
242 3v7e_A Ribosome-associated pro 41.6 32 0.0011 23.7 4.0 45 170-216 16-60 (82)
243 2ab1_A Hypothetical protein; H 40.0 71 0.0024 23.9 6.0 51 167-218 48-98 (122)
244 1vs1_A 3-deoxy-7-phosphoheptul 37.9 54 0.0018 28.5 5.8 57 165-221 152-219 (276)
245 2wqp_A Polysialic acid capsule 36.8 52 0.0018 29.6 5.6 90 165-258 155-255 (349)
246 1zco_A 2-dehydro-3-deoxyphosph 36.6 70 0.0024 27.5 6.3 58 165-222 137-205 (262)
247 3nvt_A 3-deoxy-D-arabino-heptu 36.3 49 0.0017 30.3 5.5 57 165-221 256-323 (385)
248 4gqr_A Pancreatic alpha-amylas 35.8 19 0.00064 33.7 2.7 28 190-217 71-98 (496)
249 2lbw_A H/ACA ribonucleoprotein 35.3 84 0.0029 23.3 5.8 50 170-221 25-76 (121)
250 3j21_Z 50S ribosomal protein L 34.6 67 0.0023 22.8 5.0 42 170-213 20-61 (99)
251 3igs_A N-acetylmannosamine-6-p 33.4 1.1E+02 0.0037 25.6 6.9 48 169-217 90-137 (232)
252 3q58_A N-acetylmannosamine-6-p 33.3 1.2E+02 0.0041 25.3 7.2 48 169-217 90-137 (229)
253 1vli_A Spore coat polysacchari 32.9 69 0.0024 29.3 5.8 90 165-258 165-267 (385)
254 2b8t_A Thymidine kinase; deoxy 32.6 1.9E+02 0.0064 23.9 8.2 45 171-216 75-123 (223)
255 1lwj_A 4-alpha-glucanotransfer 32.3 28 0.00095 32.3 3.2 28 190-217 64-91 (441)
256 1w41_A 50S ribosomal protein L 32.3 73 0.0025 22.7 4.9 51 170-222 21-73 (101)
257 1vr6_A Phospho-2-dehydro-3-deo 32.1 66 0.0023 29.0 5.5 57 165-221 220-287 (350)
258 2i2x_B MTAC, methyltransferase 32.0 71 0.0024 27.2 5.6 56 154-214 152-209 (258)
259 3cpq_A 50S ribosomal protein L 30.8 74 0.0025 23.1 4.8 51 170-222 26-78 (110)
260 2rdx_A Mandelate racemase/muco 30.8 75 0.0026 28.7 5.9 50 166-215 245-294 (379)
261 3bh4_A Alpha-amylase; calcium, 30.6 29 0.00097 32.7 3.1 28 190-217 73-100 (483)
262 1sjd_A N-acylamino acid racema 30.0 79 0.0027 28.4 5.9 48 167-214 242-289 (368)
263 1wpc_A Glucan 1,4-alpha-maltoh 29.8 30 0.001 32.6 3.1 28 190-217 77-104 (485)
264 1ud2_A Amylase, alpha-amylase; 29.6 31 0.0011 32.4 3.2 28 190-217 75-102 (480)
265 1ht6_A AMY1, alpha-amylase iso 29.4 32 0.0011 31.5 3.1 28 190-217 63-90 (405)
266 1g94_A Alpha-amylase; beta-alp 29.4 28 0.00096 32.4 2.7 28 190-217 59-86 (448)
267 3sz8_A 2-dehydro-3-deoxyphosph 29.3 70 0.0024 27.9 5.0 53 168-220 145-206 (285)
268 1hvx_A Alpha-amylase; hydrolas 29.2 32 0.0011 32.7 3.2 28 190-217 76-103 (515)
269 4aie_A Glucan 1,6-alpha-glucos 29.2 33 0.0011 32.7 3.2 28 190-217 74-101 (549)
270 1gcy_A Glucan 1,4-alpha-maltot 28.8 33 0.0011 32.8 3.2 28 190-217 87-114 (527)
271 3bzy_B ESCU; auto cleavage pro 28.6 31 0.0011 24.0 2.2 20 198-217 29-48 (83)
272 3i4k_A Muconate lactonizing en 28.6 1.1E+02 0.0037 27.8 6.5 50 166-215 253-302 (383)
273 1mxg_A Alpha amylase; hyperthe 28.6 34 0.0012 31.7 3.2 28 190-217 81-108 (435)
274 3ezx_A MMCP 1, monomethylamine 28.3 63 0.0021 26.8 4.5 58 153-215 120-183 (215)
275 2ale_A SNU13, NHP2/L7AE family 28.0 97 0.0033 23.5 5.1 44 170-214 37-80 (134)
276 2guy_A Alpha-amylase A; (beta- 27.9 36 0.0012 31.9 3.2 28 190-217 92-119 (478)
277 2xzm_U Ribosomal protein L7AE 27.7 1.2E+02 0.0042 22.7 5.6 51 170-221 29-80 (126)
278 1r0m_A N-acylamino acid racema 27.7 91 0.0031 28.1 5.9 48 167-214 248-295 (375)
279 2ovl_A Putative racemase; stru 27.5 68 0.0023 28.9 4.9 50 166-215 250-299 (371)
280 3e2i_A Thymidine kinase; Zn-bi 27.3 98 0.0034 25.8 5.4 35 181-216 101-135 (219)
281 3q45_A Mandelate racemase/muco 27.1 97 0.0033 27.9 5.9 51 166-216 243-293 (368)
282 2duw_A Putative COA-binding pr 27.0 1.1E+02 0.0038 23.3 5.4 46 171-224 85-130 (145)
283 2qkf_A 3-deoxy-D-manno-octulos 26.0 79 0.0027 27.4 4.8 55 165-219 136-200 (280)
284 1chr_A Chloromuconate cycloiso 25.9 1.2E+02 0.0041 27.3 6.3 49 167-215 248-296 (370)
285 1o60_A 2-dehydro-3-deoxyphosph 25.7 81 0.0028 27.6 4.8 52 168-219 143-203 (292)
286 3u5e_c L32, RP73, YL38, 60S ri 25.5 1.3E+02 0.0046 21.5 5.3 51 170-222 27-79 (105)
287 3fs2_A 2-dehydro-3-deoxyphosph 25.4 69 0.0024 28.1 4.3 55 165-220 162-225 (298)
288 3ff4_A Uncharacterized protein 25.2 1.1E+02 0.0036 22.8 4.8 45 170-223 72-116 (122)
289 4a18_G RPL30; ribosome, eukary 25.1 1E+02 0.0035 22.1 4.6 51 170-222 27-79 (104)
290 1zja_A Trehalulose synthase; s 25.1 43 0.0015 32.2 3.2 28 190-217 74-101 (557)
291 2aaa_A Alpha-amylase; glycosid 24.6 41 0.0014 31.6 2.9 28 190-217 92-119 (484)
292 3on1_A BH2414 protein; structu 24.4 1E+02 0.0036 21.8 4.5 43 170-214 23-65 (101)
293 1kko_A 3-methylaspartate ammon 24.4 1E+02 0.0035 28.3 5.5 49 166-214 309-357 (413)
294 4e84_A D-beta-D-heptose 7-phos 24.2 1.3E+02 0.0045 26.7 6.2 37 181-217 186-222 (352)
295 2dh2_A 4F2 cell-surface antige 24.1 35 0.0012 31.6 2.3 27 191-217 77-103 (424)
296 1wza_A Alpha-amylase A; hydrol 24.0 34 0.0012 32.2 2.3 28 190-217 76-103 (488)
297 1kcz_A Beta-methylaspartase; b 24.0 1.2E+02 0.004 27.9 5.9 48 167-214 310-357 (413)
298 2z1k_A (NEO)pullulanase; hydro 23.7 35 0.0012 31.9 2.3 28 190-217 91-118 (475)
299 3t7y_A YOP proteins translocat 23.6 43 0.0015 24.0 2.1 20 198-217 44-63 (97)
300 3io5_A Recombination and repai 23.4 1.7E+02 0.0057 26.1 6.4 17 198-214 151-167 (333)
301 1xbi_A 50S ribosomal protein L 23.2 1.2E+02 0.0042 22.3 4.8 43 170-214 34-77 (120)
302 1rlg_A 50S ribosomal protein L 23.0 1.5E+02 0.0051 21.7 5.3 43 170-214 32-75 (119)
303 2fym_A Enolase; RNA degradosom 23.0 1.1E+02 0.0038 28.2 5.6 47 168-214 321-367 (431)
304 2vt1_B Surface presentation of 23.0 45 0.0015 23.7 2.2 20 198-217 29-48 (93)
305 3v7q_A Probable ribosomal prot 23.0 1E+02 0.0034 22.0 4.2 43 170-214 24-66 (101)
306 1d3c_A Cyclodextrin glycosyltr 22.8 49 0.0017 32.8 3.2 28 190-217 110-137 (686)
307 3c01_E Surface presentation of 22.7 45 0.0015 24.0 2.1 20 198-217 29-48 (98)
308 1iv0_A Hypothetical protein; r 22.7 2.1E+02 0.0071 20.3 5.9 52 166-217 36-94 (98)
309 3edf_A FSPCMD, cyclomaltodextr 22.6 51 0.0017 32.1 3.2 26 192-217 195-220 (601)
310 1cyg_A Cyclodextrin glucanotra 22.6 50 0.0017 32.7 3.2 28 190-217 106-133 (680)
311 2aif_A Ribosomal protein L7A; 22.6 1.2E+02 0.0039 23.1 4.6 43 170-214 46-89 (135)
312 1j0h_A Neopullulanase; beta-al 22.5 51 0.0018 31.9 3.2 26 192-217 219-244 (588)
313 1qho_A Alpha-amylase; glycosid 22.4 51 0.0017 32.7 3.2 28 190-217 102-129 (686)
314 3dhu_A Alpha-amylase; structur 22.4 39 0.0013 31.4 2.3 26 192-217 80-105 (449)
315 1wuf_A Hypothetical protein LI 22.1 1.2E+02 0.0042 27.5 5.6 49 167-215 261-309 (393)
316 1y81_A Conserved hypothetical 22.1 1.5E+02 0.0051 22.4 5.3 43 173-223 86-128 (138)
317 3nkl_A UDP-D-quinovosamine 4-d 22.0 96 0.0033 23.0 4.2 44 170-214 54-97 (141)
318 3dip_A Enolase; structural gen 21.9 1.4E+02 0.0047 27.4 5.9 51 166-216 273-323 (410)
319 3aj7_A Oligo-1,6-glucosidase; 21.5 55 0.0019 31.7 3.2 28 190-217 82-109 (589)
320 2qgy_A Enolase from the enviro 21.5 90 0.0031 28.4 4.5 51 166-216 253-303 (391)
321 3bmv_A Cyclomaltodextrin gluca 21.4 55 0.0019 32.4 3.2 28 190-217 111-138 (683)
322 3tml_A 2-dehydro-3-deoxyphosph 21.2 69 0.0023 28.0 3.4 55 165-220 138-207 (288)
323 2d59_A Hypothetical protein PH 21.1 1.9E+02 0.0065 21.8 5.8 41 171-217 92-132 (144)
324 1jae_A Alpha-amylase; glycosid 21.1 34 0.0012 32.1 1.6 28 190-217 69-96 (471)
325 2ps2_A Putative mandelate race 20.9 68 0.0023 28.9 3.6 50 166-215 247-296 (371)
326 1wzl_A Alpha-amylase II; pullu 20.9 52 0.0018 31.8 2.9 26 192-217 216-241 (585)
327 1m53_A Isomaltulose synthase; 20.8 43 0.0015 32.3 2.3 27 191-217 88-114 (570)
328 3qtp_A Enolase 1; glycolysis, 20.7 1.2E+02 0.0041 28.2 5.1 22 107-128 224-248 (441)
329 2fc3_A 50S ribosomal protein L 20.3 1.5E+02 0.0051 21.9 4.8 43 170-214 33-76 (124)
330 2wc7_A Alpha amylase, catalyti 20.1 36 0.0012 32.0 1.5 27 191-217 98-124 (488)
331 3w01_A Heptaprenylglyceryl pho 20.1 1.7E+02 0.0058 24.6 5.6 49 165-214 21-69 (235)
No 1
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=100.00 E-value=2.2e-60 Score=443.69 Aligned_cols=353 Identities=66% Similarity=1.062 Sum_probs=289.7
Q ss_pred cchh-hcccccccchHHHHHHHHHHHHhhcceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHH
Q 018318 4 VNEW-GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLC 82 (358)
Q Consensus 4 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~ 82 (358)
...| ++.+|+..||++..+|+++..|.++.|.|+||+|++++.|++++.+.+.++|.+|||+.|||+|.++++++|+.+
T Consensus 26 ~~~~~~~~~l~~~Dpei~~~i~~E~~RQ~~~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la 105 (490)
T 3ou5_A 26 NRGWTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLC 105 (490)
T ss_dssp --CCSSCCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHH
T ss_pred ccccccccchhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHH
Confidence 4467 688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccC
Q 018318 83 RSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (358)
Q Consensus 83 ~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (358)
.++.+++||+++++|+++|.+.||+.||.+++.++++|||+|+..+..+|||++|++.+.. ..+.+.|..++.+++++|
T Consensus 106 ~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~-~~v~~sg~~~~~~~Y~vd 184 (490)
T 3ou5_A 106 QRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDV-KRISATSIFFESMPYKLN 184 (490)
T ss_dssp HHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC-----------------------------CBCEE
T ss_pred HHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCC-cccccccccccccccccC
Confidence 9999999999998888899999999999999999999999999999999999999865432 234566776788889998
Q ss_pred CCCCCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecC
Q 018318 163 SSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTT 242 (358)
Q Consensus 163 ~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~ 242 (358)
.+++.+|+|+++++.++++||+|+++.|.++...|++++.+||++.|+++++|.||.+|++..+.+++|+.++|++++|+
T Consensus 185 ~~t~~IDyd~~~~~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTT 264 (490)
T 3ou5_A 185 PKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTT 264 (490)
T ss_dssp TTTTEECHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEES
T ss_pred CCCCcccHHHHHHHHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCeeEEEEeCCCCCCC-CCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 018318 243 HKSLRGPRAGMIFYRKGPKPPK-KGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKAN 321 (358)
Q Consensus 243 ~K~l~g~~gG~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~ 321 (358)
||+|.||+||+|+++++..... +.++.+. +++.++++...||+++|+|..+.+++++.++.+.+.++|.+|.+++.+|
T Consensus 265 HKTLrGPrGG~Il~~~~~~~~~~k~~~~~~-~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~N 343 (490)
T 3ou5_A 265 HKTLRGARSGLIFYRKGVKAVDPKTGREIP-YTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKN 343 (490)
T ss_dssp SSTTCSCSCEEEEEECSEEEECC--CCEEE-CCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred cccccCCCceEEEeccccccccccccchhH-HHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999999999988532221 1122221 2678889999999999999999999999999998888899999999999
Q ss_pred HHHHHHHHhhCCceeeeCCCcceEEEEEcCCCCCCCC
Q 018318 322 AVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGK 358 (358)
Q Consensus 322 ~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~~~~~~~~ 358 (358)
++.|++.|.+.||++..+++++|+++||+++.|++||
T Consensus 344 AkaLA~~L~~~G~~vvsGgTdnHlvLvDl~~~g~tG~ 380 (490)
T 3ou5_A 344 ARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGA 380 (490)
T ss_dssp HHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHH
T ss_pred HHHHHHHHHhCCCeeecCCCCceEEEEeccccCCCHH
Confidence 9999999999999999888999999999999999875
No 2
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=100.00 E-value=4e-50 Score=389.73 Aligned_cols=348 Identities=66% Similarity=1.061 Sum_probs=262.4
Q ss_pred hcccccccchHHHHHHHHHHHHhhcceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 018318 8 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRAL 87 (358)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la 87 (358)
++.+++.+|+++++++.++..+.++.+.|++|+|+++|+|++|+...+.++|+.||++++++.|.+.++++|+.++++++
T Consensus 31 ~~~~l~~~d~~~~~~~~~e~~rq~~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a 110 (490)
T 2a7v_A 31 GQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRAL 110 (490)
T ss_dssp SCCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHH
T ss_pred ccchhhhcCHHHHHHHHHHHHHHHcCceEECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHH
Confidence 66789999999999999988888899999999999999999999999999999999999999999988899999999999
Q ss_pred HhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCC
Q 018318 88 QTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGY 167 (358)
Q Consensus 88 ~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 167 (358)
++||++.++|++.|+++|||.||..++.++++|||+|+++.++|++|++++++... ..+.+.|..++.++++++.+++.
T Consensus 111 ~l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~-~~i~~~g~~~~~~~~~vd~~~~~ 189 (490)
T 2a7v_A 111 EAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDV-KRISATSIFFESMPYKLNPKTGL 189 (490)
T ss_dssp HHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC--------------------------------CCBCTTTCS
T ss_pred HHcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcc-hhHHHcCCeEEEEecccccccCC
Confidence 99999986554457778999999999999999999999999999998876643211 12334565556667777656789
Q ss_pred CCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCC
Q 018318 168 IDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLR 247 (358)
Q Consensus 168 id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~ 247 (358)
+|++++++++++++|++|+++.+++|...|+++|.++|++||+++++|++|+.|+++.+..+.++.++|++++|+||+|+
T Consensus 190 iD~d~le~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~ 269 (490)
T 2a7v_A 190 IDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLR 269 (490)
T ss_dssp BCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGC
T ss_pred cCHHHHHHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCc
Confidence 99999999997778999988888999888999999999999999999999999988776655566689999999999999
Q ss_pred CCCeeEEEEeCCCCCCCCC-CCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 018318 248 GPRAGMIFYRKGPKPPKKG-QPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALG 326 (358)
Q Consensus 248 g~~gG~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~ 326 (358)
||+||++++++++..+++. +..+ .|++.++++...+++.+++++++.++++++|+.+...+++.++.+++.+|+++|+
T Consensus 270 Gp~GG~i~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~ 348 (490)
T 2a7v_A 270 GARSGLIFYRKGVKAVDPKTGREI-PYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMA 348 (490)
T ss_dssp SCSCEEEEEECSEEEEETTTEEEE-ECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred cccchheeeccchhcccccccchh-hHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 9999999998852110000 0000 0145667777778888889999999999999988766678889999999999999
Q ss_pred HHHhhCCceeeeCCCcceEEEEEcCCCCCCC
Q 018318 327 NYLTGKGYSLVTGGTENHLVLWDLRPLGLTG 357 (358)
Q Consensus 327 ~~L~~~G~~~~~~~~~~~~~~v~~~~~~~~~ 357 (358)
+.|.+.|+++..+...+|++|+++++.|+++
T Consensus 349 ~~L~~~G~~v~~~~t~t~lv~vdl~~~g~~~ 379 (490)
T 2a7v_A 349 DALLERGYSLVSGGTDNHLVLVDLRPKGLDG 379 (490)
T ss_dssp HHHHHTTCEEGGGSCSSSEEEEECTTTTCCH
T ss_pred HHHHHcCcEEecCCCCCeEEEEEeCCCCCCH
Confidence 9999999999764567899999999888764
No 3
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=100.00 E-value=2.7e-44 Score=350.78 Aligned_cols=353 Identities=63% Similarity=1.001 Sum_probs=284.3
Q ss_pred ccchhhcccccccchHHHHHHHHHHHHhhcceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHH
Q 018318 3 PVNEWGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLC 82 (358)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~ 82 (358)
....|.+++++.++++++..+.++..+.++.+.|+++++++|+.|++++.+.+.+.+..||++++++.+.+..+++|+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~ 95 (483)
T 1rv3_A 16 SHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLC 95 (483)
T ss_dssp THHHHTTSCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHH
T ss_pred hHHHHHhhhhhhcCHHHHHHHHHHHHHhhcCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHH
Confidence 34567888899999999999988777777899999999999999999999999888877899988888889999999999
Q ss_pred HHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccC
Q 018318 83 RSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (358)
Q Consensus 83 ~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (358)
++++++++|+++++|++.|++++|+.|+..++.++++|||+|++++++|+++++++++... ..+.+.|..+..++++++
T Consensus 96 ~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~-~~v~~~G~~~~~v~~~~~ 174 (483)
T 1rv3_A 96 QKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMAYKVN 174 (483)
T ss_dssp HHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSS-CBCSHHHHHSEEEEECBC
T ss_pred HHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcc-cCcccccceEEEEECccc
Confidence 9999999999875433457889999999988999999999999999999998876643211 123345544677777766
Q ss_pred CCCCCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecC
Q 018318 163 SSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTT 242 (358)
Q Consensus 163 ~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~ 242 (358)
++++.+|++++++++.+.+|++|+++.++++...|+++|.++|++||+++++|++|+.|++..+..+.++.++|++++|+
T Consensus 175 ~~~~~iD~d~le~~i~~~~tklIi~~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~ 254 (483)
T 1rv3_A 175 PDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTT 254 (483)
T ss_dssp TTTCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEES
T ss_pred cCCCcCCHHHHHHHHhhcCCcEEEEeCCcCCCcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecC
Confidence 55789999999999985689999885555567789999999999999999999999999887665545555889999999
Q ss_pred CccCCCCCeeEEEEeCCCCCCCC-CCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 018318 243 HKSLRGPRAGMIFYRKGPKPPKK-GQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKAN 321 (358)
Q Consensus 243 ~K~l~g~~gG~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~ 321 (358)
||+|.||+||++++++++..+.. ++... .|++...+....+++.+++++.+.++++++|+..+...+++++.+++.++
T Consensus 255 ~K~l~GprgG~i~~~~~~~~~~~~~g~~~-~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~ 333 (483)
T 1rv3_A 255 HKTLRGCRAGMIFYRRGVRSVDPKTGKEI-LYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVAN 333 (483)
T ss_dssp SGGGCCCSCEEEEEECSBCC-------CC-BCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cccCCCCCceEEEEcchhhhhccccCcch-hhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 99999999999999886432111 11111 12455556655566767888889999999999887666788999999999
Q ss_pred HHHHHHHHhhCCceeeeCCCcceEEEEEcCCCCCCC
Q 018318 322 AVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTG 357 (358)
Q Consensus 322 ~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~~~~~~~ 357 (358)
++++.+.|.+.|+++..+...+|++|+++++.|+++
T Consensus 334 ~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g~~~ 369 (483)
T 1rv3_A 334 CRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDG 369 (483)
T ss_dssp HHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCH
T ss_pred HHHHHHHHHhcCCEeccCCCCCceEEEeccCCCCCH
Confidence 999999999999998764346789999998766653
No 4
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1e-38 Score=308.63 Aligned_cols=325 Identities=48% Similarity=0.741 Sum_probs=267.2
Q ss_pred hhcccccccchHHHHHHHHHHHHhhcceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 018318 7 WGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRA 86 (358)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~l 86 (358)
+.+++++.++++++..+.++..+..+.+.|++++++++|.|++++.+.+.+.+..||++++++.|.+..+.+|+.+++++
T Consensus 21 ~~~~~l~~~~~~i~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~l 100 (447)
T 3h7f_A 21 SMSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRA 100 (447)
T ss_dssp GGGCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHhCCHHHHHHHHHHHHHHhCceeEecCCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHH
Confidence 45778889999999998877777778899999999999999999999887777778888888888888888886666999
Q ss_pred HHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCC
Q 018318 87 LQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTG 166 (358)
Q Consensus 87 a~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 166 (358)
++++|++. +.++++||++|+..++.++++|||+|+++.++|++++.++. .+...|..+..++++++.+++
T Consensus 101 a~~~g~~~----~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ 170 (447)
T 3h7f_A 101 KALFGAEF----ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGM------RLNFSGKLYENGFYGVDPATH 170 (447)
T ss_dssp HHHHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC------TTSHHHHSSEEEEECCCTTTC
T ss_pred HHHcCCCc----eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhh------hhhhcCCeeEEEEcCcCcccC
Confidence 99999986 34557899999999999999999999999999887654432 223344445566666665567
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccC
Q 018318 167 YIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSL 246 (358)
Q Consensus 167 ~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l 246 (358)
.+|++++++++++.++++|+++.++++...++++|.++|++||+++|+|++|+.|+...+..+.++.++|++++|+||+|
T Consensus 171 ~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l 250 (447)
T 3h7f_A 171 LIDMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTL 250 (447)
T ss_dssp SCCHHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGG
T ss_pred CcCHHHHHHHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCC
Confidence 89999999999766899998888888877799999999999999999999999887766554444557899999999999
Q ss_pred CCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 018318 247 RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALG 326 (358)
Q Consensus 247 ~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~ 326 (358)
+||+||++++++ ++.+.+....+++..+++....++++++++......+++++.+++.++++++.
T Consensus 251 ~G~~gG~i~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 315 (447)
T 3h7f_A 251 GGGRSGLIVGKQ---------------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIA 315 (447)
T ss_dssp CCCSCEEEEECG---------------GGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECH---------------HHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 999999999887 35555655555666677777777888888887665567889999999999999
Q ss_pred HHHhhC-----CceeeeCCCcceEEEEEcCCCCCC
Q 018318 327 NYLTGK-----GYSLVTGGTENHLVLWDLRPLGLT 356 (358)
Q Consensus 327 ~~L~~~-----G~~~~~~~~~~~~~~v~~~~~~~~ 356 (358)
+.|.+. |+++..++..++.+|+++++.|++
T Consensus 316 ~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 350 (447)
T 3h7f_A 316 DRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLD 350 (447)
T ss_dssp HHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSCC
T ss_pred HHHHhccccCCCeEEecCCCCCCEEEEEcCCCCCC
Confidence 999998 999876456788999999877654
No 5
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=100.00 E-value=2.8e-37 Score=295.13 Aligned_cols=322 Identities=52% Similarity=0.838 Sum_probs=254.2
Q ss_pred ccccccchHHHHHHHHHHHHhhcceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q 018318 10 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQT 89 (358)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~ 89 (358)
.+++..++++...+.++..+..+.+.|++++++++|.|++++.+.+...+..++++++++.+......+|+.++++++++
T Consensus 4 ~~~~~~~~~i~~~~~~e~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 83 (417)
T 3n0l_A 4 MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKL 83 (417)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHHHhcCeeeecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHH
Confidence 46777889998888776666678899999999999999999999887777778888788888888889998888999999
Q ss_pred cCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCC
Q 018318 90 FHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYID 169 (358)
Q Consensus 90 ~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id 169 (358)
+|+++. .|++++|++|+..++.++++|||+|++..++|+++..++. .+...|..+..++++++ +++.+|
T Consensus 84 ~g~~~~----~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~-~~~~~d 152 (417)
T 3n0l_A 84 FNCKFA----NVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGA------KVSSSGKMYESCFYGVE-LDGRID 152 (417)
T ss_dssp HTCSEE----ECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------------CCSEEEEECCC-TTSSCC
T ss_pred hCCCCc----ceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhh------hhhhhcceeeeEeccCC-CCCCcC
Confidence 999763 3667899999999999999999999999999877654331 22344555556666665 567899
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCC
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGP 249 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~ 249 (358)
++++++++++.++++|+++++++|...|+++|.++|++||+++|+|++|+.|..+.+..+.++.++|++++|+||+|+|+
T Consensus 153 ~~~l~~~i~~~~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~ 232 (417)
T 3n0l_A 153 YEKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGP 232 (417)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSC
T ss_pred HHHHHHHHHhcCCeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCC
Confidence 99999999856899998888888988899999999999999999999999888776554444557899999999999999
Q ss_pred CeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 018318 250 RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL 329 (358)
Q Consensus 250 ~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 329 (358)
+||+++++++ ++.+.+.....++..++++...++++.+++......++..+.++..++++++.+.|
T Consensus 233 ~~G~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L 298 (417)
T 3n0l_A 233 RGGIIMTNDE--------------ELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVL 298 (417)
T ss_dssp SCEEEEESCH--------------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEECCH--------------HHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999853 56666665545555566777777777777777555567888999999999999999
Q ss_pred hhCCceeeeCCCcceEEEEEcCCCCCC
Q 018318 330 TGKGYSLVTGGTENHLVLWDLRPLGLT 356 (358)
Q Consensus 330 ~~~G~~~~~~~~~~~~~~v~~~~~~~~ 356 (358)
.+.|+++..+...++.+|+++.+.|++
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (417)
T 3n0l_A 299 MDRKFKLVSDGTDNHLVLMSFLDREFS 325 (417)
T ss_dssp HHTTCEEGGGSCSSSEEEEECTTSSSC
T ss_pred HhCCceeccCCCCceEEEEEcccCCCC
Confidence 999998875446788899998776654
No 6
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=2.6e-36 Score=288.96 Aligned_cols=331 Identities=52% Similarity=0.782 Sum_probs=239.3
Q ss_pred CCccchhhcccccccchHHHHHHHHHHHHhhcceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHH
Q 018318 1 MDPVNEWGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIEN 80 (358)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~ 80 (358)
|...+.|.+++++.+++++...+.++..+..+.+.+.+++++++|.|.+++.+.+...++.++++.+++.+....+.+++
T Consensus 2 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (425)
T 3ecd_A 2 MSNANPFFSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEA 81 (425)
T ss_dssp --CCSHHHHCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHH
T ss_pred CcccchHHHHHHHhhCHHHHHHHHHHHHHHhcceeeecccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHH
Confidence 43345677889999999998888777666677899999999999999999999886677667777676666655445665
Q ss_pred HHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecc
Q 018318 81 LCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK 160 (358)
Q Consensus 81 ~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 160 (358)
.+++++++++|++. +.+++++|++|+..++.++++|||+|++..+.|++++..+. .....|..+..++++
T Consensus 82 ~a~~~~~~~~~~~~----~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~ 151 (425)
T 3ecd_A 82 LAIERVKRLFNAGH----ANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGA------KPALSGKWFNALQYG 151 (425)
T ss_dssp HHHHHHHHHHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------------CEEEEEC
T ss_pred HHHHHHHHHhCCCC----ceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecch------hhhhcccceeeeecC
Confidence 66688999999886 34567889999999999999999999999998877432221 122345545566666
Q ss_pred cCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEe
Q 018318 161 VNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTT 240 (358)
Q Consensus 161 ~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~ 240 (358)
++.+++.+|++++++++.++++++|+++++++|...++++|.++|++||+++|+|++|+.|+.+.+.....+..+|++++
T Consensus 152 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~ 231 (425)
T 3ecd_A 152 VSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTS 231 (425)
T ss_dssp CCTTTSSCCHHHHHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEE
T ss_pred CCcccCccCHHHHHHHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEe
Confidence 65456789999999999766899999888888988899999999999999999999999887765533333336899999
Q ss_pred cCCccCCCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 018318 241 TTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKA 320 (358)
Q Consensus 241 s~~K~l~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~ 320 (358)
|+||+|+||+||+++++++ ++.+.+....+.+..+++....++++.+++......++..+.++..+
T Consensus 232 s~sK~l~g~~~g~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~ 297 (425)
T 3ecd_A 232 TTHKTLRGPRGGFVLTNDE--------------EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLA 297 (425)
T ss_dssp ESSGGGCCCSCEEEEESCH--------------HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred cCCcccCCCCcEEEEeCCH--------------HHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999864 45555555445555556677777777777766555567788899999
Q ss_pred HHHHHHHHHhhCCceeeeCCCcceEEEEEcCCCCC
Q 018318 321 NAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGL 355 (358)
Q Consensus 321 ~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~~~~~ 355 (358)
+++++++.|.+.|+++..+...++.+|+++.+.+.
T Consensus 298 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 332 (425)
T 3ecd_A 298 NAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGL 332 (425)
T ss_dssp HHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC
T ss_pred HHHHHHHHHHhCCCeeccCCCCceEEEEEeCCCCC
Confidence 99999999999999887544578889999865443
No 7
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=100.00 E-value=1.3e-35 Score=283.61 Aligned_cols=321 Identities=50% Similarity=0.793 Sum_probs=236.1
Q ss_pred ccccchHHHHHHHHHHHHhhcceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC
Q 018318 12 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH 91 (358)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g 91 (358)
++.+++++..++.++..+..+.+.+++++++++|.|.+++.+.+...++.++++.+++.+....+.+++.+++++++++|
T Consensus 11 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 90 (420)
T 3gbx_A 11 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG 90 (420)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT
T ss_pred hhhcCHHHHHHHHHHHHhhhcceeeeccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC
Confidence 77888998888877666666789999999999999999999988667766788777777666666777777889999999
Q ss_pred CCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHH
Q 018318 92 LDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYD 171 (358)
Q Consensus 92 ~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~ 171 (358)
++.. .+++++|++|+..++.++++|||+|++..++|+++...+. .+...|..+..++++.+ +++.+|++
T Consensus 91 ~~~~----~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~-~~~~~d~~ 159 (420)
T 3gbx_A 91 ADYA----NVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGS------PVNFSGKLYNIVPYGID-ESGKIDYD 159 (420)
T ss_dssp CSEE----ECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------------CHHHHSEEEEEEEC-TTCSCCHH
T ss_pred CCCc----eeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccch------hhhhcccceeEEeccCC-ccCCcCHH
Confidence 9763 4667889999999999999999999999999887543321 22334544555566655 46789999
Q ss_pred HHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCCe
Q 018318 172 KLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA 251 (358)
Q Consensus 172 ~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g 251 (358)
+++++++++++++|+++.+++|...|+++|.++|++||+++|+|++|+.|+...+..+..+..+|++++|+||+++||+|
T Consensus 160 ~l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g 239 (420)
T 3gbx_A 160 EMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRG 239 (420)
T ss_dssp HHHHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCSC
T ss_pred HHHHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCCc
Confidence 99999987679999998888998889999999999999999999999888776554444445789999999999988999
Q ss_pred eEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 018318 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (358)
Q Consensus 252 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 331 (358)
|++++++.. . ++.+.+....+++..+++....++++++++......+++++.+++.++++++++.|.+
T Consensus 240 g~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 307 (420)
T 3gbx_A 240 GLILAKGGD----------E--ELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN 307 (420)
T ss_dssp EEEEESSCC----------H--HHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCCc----------H--HHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Confidence 999998721 0 3555555545555556677777777777776665556788899999999999999999
Q ss_pred CCceeeeCCCcceEEEEEcCCCCC
Q 018318 332 KGYSLVTGGTENHLVLWDLRPLGL 355 (358)
Q Consensus 332 ~G~~~~~~~~~~~~~~v~~~~~~~ 355 (358)
.|+++..+...++.+|+++.+.++
T Consensus 308 ~g~~~~~~~~~~~~~~~~~~~~~~ 331 (420)
T 3gbx_A 308 RGYKVVSGGTENHLFLLDLVDKNL 331 (420)
T ss_dssp TTCEEGGGSCSSSEEEEECGGGTC
T ss_pred cCCeeccCCCCCeEEEEEcCCCCC
Confidence 999987644678889999876544
No 8
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=100.00 E-value=2.4e-33 Score=266.81 Aligned_cols=319 Identities=53% Similarity=0.842 Sum_probs=239.4
Q ss_pred cccccchHHHHHHHHHHHHhhcceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 018318 11 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF 90 (358)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~ 90 (358)
.++++++..+..+.++..+..+.+.+.++++++|+.|++++.+.+...+..+|++++++.+.+...++|+.+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~ 82 (405)
T 2vi8_A 3 YLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF 82 (405)
T ss_dssp SHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhCHHHHHHHHHHHHHhhcceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh
Confidence 45567788888887665655667788888899999999999988755555566666666666667788877889999999
Q ss_pred CCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCH
Q 018318 91 HLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDY 170 (358)
Q Consensus 91 g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~ 170 (358)
|+++ ..+++++|++|+..++.+++++||+|+++.+.|+++.... ..+...|....+++++++++++.+|+
T Consensus 83 g~~~----~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~d~ 152 (405)
T 2vi8_A 83 GAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHG------SPVNFSGVQYNFVAYGVDPETHVIDY 152 (405)
T ss_dssp TCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTT------CTTSHHHHHSEEEEECBCTTTCSBCH
T ss_pred CCCc----eEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhccc------chhhhccceeEEEecccccccCCcCH
Confidence 9986 3455688899999999999999999999998877654211 01123444335566665434678999
Q ss_pred HHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCC
Q 018318 171 DKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPR 250 (358)
Q Consensus 171 ~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~ 250 (358)
+++++++++.++++|+++.++++...++++|.++|++||+++|+|++|+.|....+.....+..+|++++|+||+++|+.
T Consensus 153 ~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~ 232 (405)
T 2vi8_A 153 DDVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPR 232 (405)
T ss_dssp HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCS
T ss_pred HHHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCC
Confidence 99999997657898888666777777899999999999999999999987765443222223368999999999998788
Q ss_pred eeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh
Q 018318 251 AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLT 330 (358)
Q Consensus 251 gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 330 (358)
||++++++ ++.+.+.....++..++++...++++.++++.....+++...++..++++++.+.|+
T Consensus 233 gG~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 297 (405)
T 2vi8_A 233 GGMILCQE---------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQ 297 (405)
T ss_dssp CEEEEECH---------------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEcH---------------HHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 89999876 455555544334444555666777767777765444567888999999999999999
Q ss_pred hCCceeeeCCCcceEEEEEcCCCC
Q 018318 331 GKGYSLVTGGTENHLVLWDLRPLG 354 (358)
Q Consensus 331 ~~G~~~~~~~~~~~~~~v~~~~~~ 354 (358)
+.|+++..+...++.+|+++...+
T Consensus 298 ~~g~~~~~~~~~~~~~~~~~~~~~ 321 (405)
T 2vi8_A 298 NEGFTLVSGGTDNHLLLVDLRPQQ 321 (405)
T ss_dssp HTTCEEGGGSCSSSEEEEECGGGT
T ss_pred hCCCeEecCCCCceEEEEEccCCC
Confidence 999988753346788999986433
No 9
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=100.00 E-value=3.8e-33 Score=265.56 Aligned_cols=316 Identities=50% Similarity=0.833 Sum_probs=239.4
Q ss_pred cccchHHHHHHHHHHHHhhcceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCC
Q 018318 13 ETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHL 92 (358)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~ 92 (358)
.+-++.+...+.++..+.++.+.+.+++++++|.|.+++.+.+...+..+|++.++..|.+....+|+.+++++++++|+
T Consensus 5 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~ 84 (407)
T 2dkj_A 5 LKRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGA 84 (407)
T ss_dssp -CCCHHHHHHHHHHHHHHHTSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhhcceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCC
Confidence 34457777888777666678899999999999999999998886544446666555556666667776677899999999
Q ss_pred CCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHH
Q 018318 93 DPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDK 172 (358)
Q Consensus 93 ~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~ 172 (358)
++ ..+++++|+.|+..++.+++++||+|+++.+.|++++... ..+...|..+..++++++++++.+|+++
T Consensus 85 ~~----~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~d~~~ 154 (407)
T 2dkj_A 85 AW----ANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG------SRVNFSGKLYKVVSYGVRPDTELIDLEE 154 (407)
T ss_dssp SE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT------CTTSHHHHHSEEEEECCCTTTSSCCHHH
T ss_pred Cc----ceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchH------HHHHhcCceEEEEecCCCcccCccCHHH
Confidence 86 3466788999999999999999999999999887653211 1233455544556665443467899999
Q ss_pred HHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCCee
Q 018318 173 LEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAG 252 (358)
Q Consensus 173 l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~gG 252 (358)
+++++++.++++|+++.+++|...|+++|.++|++||+++|+|++|+.|+...+.....++.+|++++|+||+|+|+++|
T Consensus 155 l~~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G 234 (407)
T 2dkj_A 155 VRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGG 234 (407)
T ss_dssp HHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSCE
T ss_pred HHHHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCce
Confidence 99999755789998888888988899999999999999999999998877655433222335899999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 018318 253 MIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (358)
Q Consensus 253 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (358)
+++++++ ++.+.+.....++..++++...++++.++++.....+++...++..++++++.+.|++.
T Consensus 235 ~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 300 (407)
T 2dkj_A 235 LILSNDP--------------ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR 300 (407)
T ss_dssp EEEESCH--------------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCH--------------HHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999843 45555554433443445555556566677776544566888899999999999999999
Q ss_pred CceeeeCCCcceEEEEEcCC
Q 018318 333 GYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 333 G~~~~~~~~~~~~~~v~~~~ 352 (358)
|+++..++..++.+|+++..
T Consensus 301 g~~~~~~~~~~~~~~~~~~~ 320 (407)
T 2dkj_A 301 GYRIVTGGTDNHLFLVDLRP 320 (407)
T ss_dssp TCEEGGGSCSSSEEEEECGG
T ss_pred CceeecCCCCceEEEEECcc
Confidence 99887533567889998754
No 10
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.94 E-value=2.5e-25 Score=211.71 Aligned_cols=290 Identities=13% Similarity=0.057 Sum_probs=192.5
Q ss_pred cceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHH
Q 018318 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (358)
Q Consensus 32 ~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~ 111 (358)
+.+.+.+++..++++|++++.+.+..++ ...+. .+.+++++++++++|++.++ ..+++++|++|+.
T Consensus 13 ~~~~~~pgp~~~~~~v~~a~~~~~~~~~-----------~~~~~-~~~~~~~~~la~~~~~~~~~--~v~~~~sgt~al~ 78 (411)
T 3nnk_A 13 SRLLMGPGPINADPRVLRAMSSQLIGQY-----------DPAMT-HYMNEVMALYRGVFRTENRW--TMLVDGTSRAGIE 78 (411)
T ss_dssp CCEEESSSCCCCCHHHHHHHTSCCCCTT-----------CHHHH-HHHHHHHHHHHHHHTCCCSE--EEEEESCHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhhccccccc-----------cHHHH-HHHHHHHHHHHHHhCCCCCc--EEEECCCcHHHHH
Confidence 4577788899999999999986542211 11222 33446679999999998742 1244456688999
Q ss_pred HHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCC
Q 018318 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191 (358)
Q Consensus 112 ~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~ 191 (358)
.++.+++++||+|++..+.|.+.. .. ..+...|..+. .++.+ .++.+|+++++++++++++++|++++++
T Consensus 79 ~~~~~~~~~gd~Vl~~~~~~~~~~-~~------~~~~~~g~~~~--~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~ 148 (411)
T 3nnk_A 79 AILVSAIRPGDKVLVPVFGRFGHL-LC------EIARRCRAEVH--TIEVP-WGEVFTPDQVEDAVKRIRPRLLLTVQGD 148 (411)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHH-HH------HHHHHTTCEEE--EEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred HHHHHhcCCCCEEEEecCCchHHH-HH------HHHHHcCCeEE--EEecC-CCCCCCHHHHHHHHhhCCCeEEEEeCCC
Confidence 999999999999999998764421 10 12234565444 44444 3678899999999986689999888765
Q ss_pred CC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCC----
Q 018318 192 YP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKP---- 262 (358)
Q Consensus 192 ~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~---- 262 (358)
|+ ...|+++|.++|++||+++|+|++|+.|.. +..+. ++|++++|+||+|.|+.| |+++++++..+
T Consensus 149 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-----~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~ 223 (411)
T 3nnk_A 149 TSTTMLQPLAELGEICRRYDALFYTDATASLGGN-----PLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRR 223 (411)
T ss_dssp TTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTB-----CCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHT
T ss_pred CCcceeccHHHHHHHHHHcCCEEEEECCcccCCc-----ccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhh
Confidence 54 567899999999999999999999876543 12232 789999999999877766 88888764210
Q ss_pred CC---C--------CC--CCCc-cc-cHHHHhhhh-cCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 018318 263 PK---K--------GQ--PEGA-VY-DFEDKINFA-VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALG 326 (358)
Q Consensus 263 ~~---~--------~~--~~~~-~~-~~~~~~~~~-~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~ 326 (358)
.. + +| .... +| ++....... ......++++...++++.++++.....+++...++..++++++.
T Consensus 224 ~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~ 303 (411)
T 3nnk_A 224 RKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALV 303 (411)
T ss_dssp TCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 00 0 00 0000 00 010000000 00112245566677777777776654336788899999999999
Q ss_pred HHHhhCCceeeeCC--CcceEEEEEc
Q 018318 327 NYLTGKGYSLVTGG--TENHLVLWDL 350 (358)
Q Consensus 327 ~~L~~~G~~~~~~~--~~~~~~~v~~ 350 (358)
+.|++.|+++..+. ...+.+++.+
T Consensus 304 ~~L~~~g~~~~~~~~~~~~~~~~~~~ 329 (411)
T 3nnk_A 304 KGIQAMGLETFGDLKHKMNNVLGVVI 329 (411)
T ss_dssp HHHHHTTCCBCSCGGGBCSSEEEEEC
T ss_pred HHHHHcCCEeCCCcccccccEEEEEC
Confidence 99999998886522 1345666665
No 11
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.94 E-value=2e-25 Score=210.13 Aligned_cols=288 Identities=15% Similarity=0.078 Sum_probs=190.0
Q ss_pred ceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCC--CCCCccccccCChHHH
Q 018318 33 GIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDP--TQWGVNVQPYSGSPAN 110 (358)
Q Consensus 33 ~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~--~~~~~~v~~~sGt~a~ 110 (358)
.+.+.+++..++++|++++.+.+..++ + .....+.+++++++++++|++. + ..+++++|++|+
T Consensus 3 ~~~~~~gp~~~~~~v~~a~~~~~~~~~-----------~-~~~~~~~~~~~~~la~~~~~~~~~~---~v~~~~g~t~al 67 (384)
T 3zrp_A 3 KLLLHVGPTTIKEDVLVAGLENNVGFT-----------S-KEFVEALAYSLKGLRYVMGASKNYQ---PLIIPGGGTSAM 67 (384)
T ss_dssp ---CCSSCSCCCHHHHHHTTCCSCCTT-----------S-HHHHHHHHHHHHHHHHHHTCCTTSE---EEEEESCHHHHH
T ss_pred ceeccCCCCCCCHHHHHHhhccccccc-----------c-HHHHHHHHHHHHHHHHHhCCCCCCc---EEEEcCCcHHHH
Confidence 356778889999999999987654321 1 1123344466799999999986 3 235556667899
Q ss_pred HHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCC
Q 018318 111 FAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGS 190 (358)
Q Consensus 111 ~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~ 190 (358)
. ++.+++++||+|+++.+.|.+.. +. ..+...|.. ++.++++ .++.+|+++++++++++++++|+++++
T Consensus 68 ~-~~~~~~~~gd~vi~~~~~~~~~~---~~----~~~~~~g~~--~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~ 136 (384)
T 3zrp_A 68 E-SVTSLLKPNDKILVVSNGVFGDR---WE----QIFKRYPVN--VKVLRPS-PGDYVKPGEVEEEVRKSEYKLVALTHV 136 (384)
T ss_dssp H-HGGGGCCTTCEEEEECSSHHHHH---HH----HHHTTSSCE--EEEECCS-TTCCCCHHHHHHHHHHSCEEEEEEESE
T ss_pred H-HHHhhcCCCCEEEEecCCcchHH---HH----HHHHHcCCc--EEEecCC-CCCCCCHHHHHHHHHhCCCcEEEEeCC
Confidence 9 99999999999999987654321 10 112345654 4444544 357899999999998767898888876
Q ss_pred CCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCC-C-
Q 018318 191 AYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKP-P- 263 (358)
Q Consensus 191 ~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~-~- 263 (358)
+|+ ...|+++|.++|++||+++|+|++|+.|... .++. ++|++++|+||+|+|+.| |+++++++..+ +
T Consensus 137 ~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-----~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~ 211 (384)
T 3zrp_A 137 ETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEE-----VKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILD 211 (384)
T ss_dssp ETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSC-----CCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHH
T ss_pred CCCCceECcHHHHHHHHHhcCCEEEEECcccccCcc-----ccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhc
Confidence 554 5779999999999999999999999866432 2233 789999999999976665 88888774210 0
Q ss_pred CCCCCCCccccHHHHh---hhhc--CCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeee
Q 018318 264 KKGQPEGAVYDFEDKI---NFAV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 338 (358)
Q Consensus 264 ~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~ 338 (358)
.+........++.... .... .....++++...++++.+++..+...+++...++..++++++.+.|++.|+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 291 (384)
T 3zrp_A 212 SQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVA 291 (384)
T ss_dssp HCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSC
T ss_pred CCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEcc
Confidence 0000000000011110 1100 1111235666677777777776544346788899999999999999999988775
Q ss_pred CC---CcceEEEEEcC
Q 018318 339 GG---TENHLVLWDLR 351 (358)
Q Consensus 339 ~~---~~~~~~~v~~~ 351 (358)
+. ...+++++.+.
T Consensus 292 ~~~~~~~~~~~~~~~~ 307 (384)
T 3zrp_A 292 RRPESYSNTVTGVILK 307 (384)
T ss_dssp SSGGGBCSSEEEEECS
T ss_pred CcccccCccEEEEECC
Confidence 32 13566677654
No 12
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.94 E-value=8.1e-25 Score=208.45 Aligned_cols=290 Identities=12% Similarity=0.074 Sum_probs=191.5
Q ss_pred cceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHH
Q 018318 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (358)
Q Consensus 32 ~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~ 111 (358)
+.+.+.+++..++++|.+++.+.....+ . .....+.+.+++++++++|++.+. ..+++++|++|+.
T Consensus 11 ~~~~~~p~p~~~~~~v~~a~~~~~~~~~-----------~-~~~~~~~~~l~~~la~~~g~~~~~--~~~~~~s~t~al~ 76 (416)
T 3isl_A 11 LRTIMTPGPVEVDPRVLRVMSTPVVGQF-----------D-PAFTGIMNETMEMLRELFQTKNRW--AYPIDGTSRAGIE 76 (416)
T ss_dssp CCEECSSSSCCCCHHHHHHTTSCCCCTT-----------S-HHHHHHHHHHHHHHHHHTTCCCSE--EEEEESCHHHHHH
T ss_pred cceeecCCCcCcCHHHHHHhcccCCCCc-----------c-HHHHHHHHHHHHHHHHHhCCCCCc--EEEecCcHHHHHH
Confidence 4566778888899999999875322111 1 112334456679999999988642 1124556678999
Q ss_pred HHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCC
Q 018318 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191 (358)
Q Consensus 112 ~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~ 191 (358)
.++.++++|||+|+++.+.|.+.. .. ..++..|..+. .++.+ .++.+|++++++++++.++++|++++++
T Consensus 77 ~~~~~l~~~gd~Vl~~~~~~~~~~-~~------~~~~~~g~~~~--~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~ 146 (416)
T 3isl_A 77 AVLASVIEPEDDVLIPIYGRFGYL-LT------EIAERYGANVH--MLECE-WGTVFDPEDIIREIKKVKPKIVAMVHGE 146 (416)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHH-HH------HHHHHTTCEEE--EEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred HHHHHhcCCCCEEEEecCCcccHH-HH------HHHHhcCCeeE--EEecC-CCCCCCHHHHHHHHhhCCCcEEEEEccC
Confidence 999999999999999998765421 00 12334565444 44444 3568999999999985588999888766
Q ss_pred CC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCC-CC-
Q 018318 192 YP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKP-PK- 264 (358)
Q Consensus 192 ~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~-~~- 264 (358)
|+ ...|+++|.++|++||+++|+|++|+.|... .++. ++|++++|+||++.|+.| |+++++++..+ +.
T Consensus 147 nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-----~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~ 221 (416)
T 3isl_A 147 TSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCE-----VKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAA 221 (416)
T ss_dssp TTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSC-----CCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHT
T ss_pred CCCceecCHHHHHHHHHHcCCEEEEECCccccCCC-----cchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhc
Confidence 54 5778999999999999999999999876432 2232 789999999999877766 88888764210 00
Q ss_pred -----------------CCCCCCc-cc-cHHHHhhh-hcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 018318 265 -----------------KGQPEGA-VY-DFEDKINF-AVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVA 324 (358)
Q Consensus 265 -----------------~~~~~~~-~~-~~~~~~~~-~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~ 324 (358)
.++..+. ++ +....... .......++++...++++.++++.+...++++..++..+++++
T Consensus 222 ~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 301 (416)
T 3isl_A 222 RKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAA 301 (416)
T ss_dssp C------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 0000000 00 01111000 0011123455666677777777766433367889999999999
Q ss_pred HHHHHhhCCceeeeCCC--cceEEEEEc
Q 018318 325 LGNYLTGKGYSLVTGGT--ENHLVLWDL 350 (358)
Q Consensus 325 l~~~L~~~G~~~~~~~~--~~~~~~v~~ 350 (358)
+.+.|++.|+++..+.. ..+++++.+
T Consensus 302 l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 329 (416)
T 3isl_A 302 LAAGIKAMGLRLFGDDSCKMPVVTCVEI 329 (416)
T ss_dssp HHHHHHHTTCCBCSCGGGBCTTEEEEEC
T ss_pred HHHHHHHcCCEeccCccccCCcEEEEeC
Confidence 99999999998875321 245666665
No 13
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.94 E-value=3.8e-25 Score=211.24 Aligned_cols=291 Identities=14% Similarity=0.129 Sum_probs=193.7
Q ss_pred ccchHHHHHH---HHHHHHhhcceeEeccCCCCCHHHHHHHhcccccCC----CCCCCCCCCCCCchhHHHHHHHHHHHH
Q 018318 14 TVDPEIHDLI---EKEKRRQCRGIELIASENFTSFAVIEALGSALTNKY----SEGMPGNRYYGGNEFIDEIENLCRSRA 86 (358)
Q Consensus 14 ~~~~~~~~~~---~~~~~~~~~~~~l~a~~~~~~~~V~~a~~~~~~~~~----~~g~~~~~~~~~~~~~~~le~~~~~~l 86 (358)
+.++++..+. +++..+....+..++..|. ++|++++.+...... ..||.+ ++..++.+| +++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~n~--~~Vl~a~~~~~~~~~~~~~~~gy~Y-----~~~g~~~Le----~~l 83 (427)
T 3hvy_A 15 NINERVLELYERALNDVEKEFKYYDEIREYNQ--LKVLKAFQEERISESHFTNSSGYGY-----NDIGRDSLD----RVY 83 (427)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCT-----TCHHHHHHH----HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHhcccCcCCCC-----CchhHHHHH----HHH
Confidence 3456665433 3443444456777777665 889999987643221 123332 233466776 789
Q ss_pred HHhcCCCCCCCCcccc---ccCChHHHHHHHHhhcCCCCeEEEec-CCCCcccccc--ccccCCcccccccceeEEeecc
Q 018318 87 LQTFHLDPTQWGVNVQ---PYSGSPANFAAYTAVLEPHDRIMGLD-LPSGGHLTHG--YYTSGGKKISATSIYFESLPYK 160 (358)
Q Consensus 87 a~~~g~~~~~~~~~v~---~~sGt~a~~~~l~a~~~~gd~Vl~~~-~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~ 160 (358)
++++|++. + ++ ++||++|+..++.++++|||+|++.. +.|++..... ....+-..+...|+ +++.++
T Consensus 84 A~l~g~e~----a-lv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~--~~~~v~ 156 (427)
T 3hvy_A 84 ANIFNTES----A-FVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV--KYKMVD 156 (427)
T ss_dssp HHHHTCSE----E-EEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC--EEEECC
T ss_pred HHHhCCCc----e-EEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCC--EEEEec
Confidence 99999986 3 44 78999999999999999999999998 7776543100 00000001233454 444444
Q ss_pred cCCCCCCCCHHHHHHHHhh-cCCcEEEEcC----CCCC--CccchHHHHHHHHH--hCCEEEEechhhhhhhhccccCCC
Q 018318 161 VNSSTGYIDYDKLEEKALD-FRPKLIICGG----SAYP--RDWDYARFRAVADK--CGALLLCDMAHISGLVAAQEAANP 231 (358)
Q Consensus 161 ~~~~~~~id~~~l~~~l~~-~~~~~v~~~~----~~~~--~~~~l~~i~~la~~--~g~~lvvD~a~~~g~~~~~~~~~~ 231 (358)
. +++.+|++++++++++ .++|+|++++ ++++ ...|+++|.++|++ +|+++++|++|+.+... ..+
T Consensus 157 ~--~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~----~~p 230 (427)
T 3hvy_A 157 L--KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEE----KEP 230 (427)
T ss_dssp C--BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSS----SCG
T ss_pred C--CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccC----CCC
Confidence 4 3678999999999974 4789998887 6665 45789999999999 89999999998766421 133
Q ss_pred CC-cccEEEecCCccCCC---CCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhh-cCCCCc--CCCChhHHHHHHHHHH
Q 018318 232 FE-YCHIVTTTTHKSLRG---PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA-VFPSLQ--GGPHNHQIGALAVALK 304 (358)
Q Consensus 232 ~~-~~d~~~~s~~K~l~g---~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~al~~al~ 304 (358)
+. ++|++++|+||+++| +.||++++++ ++.+.+... ..++.. .++.... ...+++
T Consensus 231 ~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~---------------~li~~l~~~~~~~~~g~~~~~~~~~---a~~~~~ 292 (427)
T 3hvy_A 231 TDVGADIIAGSLIKNIGGGIATTGGYIAGKE---------------EYVTQATFRVTVPGIGGECGSTFGV---MRSLYE 292 (427)
T ss_dssp GGGTCSEEEEETTSGGGTTTCCSCEEEEECH---------------HHHHHHHHHHSCTTTGGGCCCCTTC---HHHHHH
T ss_pred cccCCeEEEECCcccccccccceEEEEEECH---------------HHHHHHHHHhhcCCcccccCCCHHH---HHHHHH
Confidence 44 799999999999976 7889999977 466666542 223321 1221111 112222
Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcce-----EEEEEc
Q 018318 305 QASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENH-----LVLWDL 350 (358)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~-----~~~v~~ 350 (358)
.+ .....++++..+++.++++.|+++|+++++. .++ ++.+.+
T Consensus 293 gl--~~~~~r~~~~~~~a~~la~~L~~~g~~V~p~--~~~~~~~li~~~~l 339 (427)
T 3hvy_A 293 GL--FMAPHVTIEAVKGAVFCARIMELAGFDVLPK--YNDKRTDIIQAIKF 339 (427)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHTTCEEESC--TTSCCSSSEEEEEC
T ss_pred hH--hHHHHHHHHHHHHHHHHHHHHHhCCCeecCC--CCCCCceEEEEEeC
Confidence 22 1235788899999999999999999998652 444 666665
No 14
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.93 E-value=1.3e-24 Score=204.84 Aligned_cols=287 Identities=11% Similarity=0.042 Sum_probs=191.5
Q ss_pred cceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCC-CCCCCccccccCChHHH
Q 018318 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD-PTQWGVNVQPYSGSPAN 110 (358)
Q Consensus 32 ~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~v~~~sGt~a~ 110 (358)
..+...+++..+++.|.+++.+.+..++ +.. ...+.+.+++++++++|++ .+ ..+++++|++|+
T Consensus 20 ~~~l~~~~~~~~~~~v~~a~~~~~~~~~-----------~~~-~~~~~~~~~~~la~~~g~~~~~---~v~~~~g~t~a~ 84 (386)
T 2dr1_A 20 KYKLFTAGPVACFPEVLEIMKVQMFSHR-----------SKE-YRKVHMDTVERLREFLEVEKGE---VLLVPSSGTGIM 84 (386)
T ss_dssp CSEECCSSSCCCCHHHHHHTTSCCCCTT-----------SHH-HHHHHHHHHHHHHHHHTCSSSE---EEEESSCHHHHH
T ss_pred cceeecCCCcCCcHHHHHHHhccccccc-----------CHH-HHHHHHHHHHHHHHHhCCCCCc---EEEEeCChHHHH
Confidence 3455567788889999999887654322 111 2344556679999999997 32 234556678899
Q ss_pred HHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhh-cCCcEEEEcC
Q 018318 111 FAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD-FRPKLIICGG 189 (358)
Q Consensus 111 ~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~-~~~~~v~~~~ 189 (358)
..++.+++++||+|+++.+.|.+.. .. ..+...|.. ++.++.+ .++.+|++++++++++ .++++|++++
T Consensus 85 ~~~~~~l~~~gd~vl~~~~~~~~~~-~~------~~~~~~g~~--~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~ 154 (386)
T 2dr1_A 85 EASIRNGVSKGGKVLVTIIGAFGKR-YK------EVVESNGRK--AVVLEYE-PGKAVKPEDLDDALRKNPDVEAVTITY 154 (386)
T ss_dssp HHHHHHHSCTTCEEEEEESSHHHHH-HH------HHHHHTTCE--EEEEECC-TTCCCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHhhcCCCeEEEEcCCchhHH-HH------HHHHHhCCc--eEEEecC-CCCCCCHHHHHHHHhcCCCCcEEEEEe
Confidence 9999999999999999998776521 00 122345654 4444544 3577999999999964 3688888876
Q ss_pred CCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCC-C
Q 018318 190 SAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKP-P 263 (358)
Q Consensus 190 ~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~-~ 263 (358)
++++ ...|+++|.++|++||+++|+|++|+.|... .++. ++|++++|+||+|++|.| |+++++++..+ +
T Consensus 155 ~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-----~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~ 229 (386)
T 2dr1_A 155 NETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGAD-----IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIA 229 (386)
T ss_dssp EETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBC-----CCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHH
T ss_pred ecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcc-----ccccccCCcEEEEeccccccCCCceEEEEECHHHHHHH
Confidence 5544 5679999999999999999999998866431 2233 689999999999987755 99999874210 0
Q ss_pred CC---CCCCCccccHHHHhhhhc-CCCCcCCCChhHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHhhCCceeee
Q 018318 264 KK---GQPEGAVYDFEDKINFAV-FPSLQGGPHNHQIGALAVALKQASTP-AFKAYAKQVKANAVALGNYLTGKGYSLVT 338 (358)
Q Consensus 264 ~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~G~~~~~ 338 (358)
.+ .+... ++...+.... .....++++....+++..+++.+... +++...++..++++++.+.|++.|+++..
T Consensus 230 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 306 (386)
T 2dr1_A 230 EKMPERGWYF---DIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILA 306 (386)
T ss_dssp TTCTTCCSTT---CHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSS
T ss_pred hcCCCCceEE---eHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCc
Confidence 00 00000 1111111110 01112345656666667777765432 35778899999999999999998988765
Q ss_pred CCC--cceEEEEEcC
Q 018318 339 GGT--ENHLVLWDLR 351 (358)
Q Consensus 339 ~~~--~~~~~~v~~~ 351 (358)
+.. ..+.+|+.+.
T Consensus 307 ~~~~~~~~~~~~~~~ 321 (386)
T 2dr1_A 307 EPGHESPTITAVLTP 321 (386)
T ss_dssp CTTCBCSSEEEEECC
T ss_pred CccccCCceEEEEcC
Confidence 311 4667888763
No 15
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.93 E-value=4.5e-25 Score=210.70 Aligned_cols=285 Identities=13% Similarity=0.118 Sum_probs=186.8
Q ss_pred HHHHHhhcceeEeccCCCCCHHHHHHHhcccccC-CCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCcccc-
Q 018318 25 KEKRRQCRGIELIASENFTSFAVIEALGSALTNK-YSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQ- 102 (358)
Q Consensus 25 ~~~~~~~~~~~l~a~~~~~~~~V~~a~~~~~~~~-~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~- 102 (358)
++..+..+.+..++..+. +.|++++.+..... ...+ ...|..++..++.+| +.+++++|++. +.++
T Consensus 28 ~~~~~~~~~~~~~a~~n~--~~Vl~A~~~~~~~~~~~~~--~~gy~y~~~~~~~Le----~~lA~l~g~e~----alv~p 95 (427)
T 3i16_A 28 NDIQNQFKILDDIREFNQ--LKVLNAFQEERISEAHFTN--SSGYGYGDIGRDSLD----AVYARVFNTES----ALVRP 95 (427)
T ss_dssp HHTHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCC--CCTTCTTCHHHHHHH----HHHHHHHTCSE----EEEET
T ss_pred HHHHHHHHHHHHHHHhCH--HHHHHHHHHhchhHHhcCC--CCCCCCCHHHHHHHH----HHHHHHhCCcc----eEEeC
Confidence 333333345555555554 78999987653221 1111 112222445566777 78999999986 3232
Q ss_pred -ccCChHHHHHHHHhhcCCCCeEEEec-CCCCccccccccccCC--cccccccceeEEeecccCCCCCCCCHHHHHHHHh
Q 018318 103 -PYSGSPANFAAYTAVLEPHDRIMGLD-LPSGGHLTHGYYTSGG--KKISATSIYFESLPYKVNSSTGYIDYDKLEEKAL 178 (358)
Q Consensus 103 -~~sGt~a~~~~l~a~~~~gd~Vl~~~-~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~ 178 (358)
++||++|+..++.++++|||+|++.. +.|+++....-.+..+ ..+...|. +++.++.+ +++.+|+++++++++
T Consensus 96 ~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~--~~~~v~~~-~~g~~D~e~l~~~l~ 172 (427)
T 3i16_A 96 HFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGI--NYKQVDLK-EDGKPNLEEIEKVLK 172 (427)
T ss_dssp TCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTC--EEEECCCC-TTSSCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCC--EEEEecCc-cCCCcCHHHHHHHhh
Confidence 78999999999999999999999998 8777543110000000 01233454 44555554 367899999999997
Q ss_pred h-cCCcEEEEcC----CCCC--CccchHHHHHHHHH--hCCEEEEechhhhhhhhccccCCCCC-cccEEEecCCccCCC
Q 018318 179 D-FRPKLIICGG----SAYP--RDWDYARFRAVADK--CGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTHKSLRG 248 (358)
Q Consensus 179 ~-~~~~~v~~~~----~~~~--~~~~l~~i~~la~~--~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~~~s~~K~l~g 248 (358)
+ .++++|+++. ++++ ...|+++|+++|++ +|+++++|++|+.+... ..+.. ++|++++|+||+++|
T Consensus 173 ~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~----~~p~~~gaDiv~~S~sK~lgg 248 (427)
T 3i16_A 173 EDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDT----KEPTDVGADLIAGSLIKNIGG 248 (427)
T ss_dssp TCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSS----SCGGGGTCSEEEEETTSGGGT
T ss_pred CCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCcccccc----CCccccCCeEEEecCcccCCC
Confidence 4 4789998887 5555 46789999999999 99999999998765421 12334 799999999999976
Q ss_pred ---CCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhc-CCCCcC--CCChhHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 018318 249 ---PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAV-FPSLQG--GPHNHQIGALAVALKQASTPAFKAYAKQVKANA 322 (358)
Q Consensus 249 ---~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~ 322 (358)
+.||++++++ ++.+++.... .+.... ++... +...+++-+ .....+++++.+++
T Consensus 249 ~g~~~gG~i~~~~---------------~li~~l~~~~~~~~~g~~~~~~~~---~a~~~l~gl--~~~~~r~~~~~~~a 308 (427)
T 3i16_A 249 GIAPTGGYLAGTK---------------DCIEKTSYRLTVPGIGGECGSTFG---VVRSMYQGL--FLAPHISMEALKGA 308 (427)
T ss_dssp TTCCSCEEEEECH---------------HHHHHHHHHHSCTTTGGGCCCCTT---CHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred CCCceEEEEEECH---------------HHHHHHHHhcccCccCccCCccHH---HHHHHHHHH--HHHHHHHHHHHHHH
Confidence 7889999987 4666655422 222211 12111 012222222 23467889999999
Q ss_pred HHHHHHHhhCCceeeeCCCcce-----EEEEEc
Q 018318 323 VALGNYLTGKGYSLVTGGTENH-----LVLWDL 350 (358)
Q Consensus 323 ~~l~~~L~~~G~~~~~~~~~~~-----~~~v~~ 350 (358)
.+++++|+++|+++++ ..+| ++.+.+
T Consensus 309 ~~la~~L~~~g~~V~p--~~~~~~~~~i~~i~l 339 (427)
T 3i16_A 309 ILCSRIMELAGFEVMP--KYDEKRSDIIQSIKF 339 (427)
T ss_dssp HHHHHHHHHTTCEEES--CTTSCCSSSCEEEEC
T ss_pred HHHHHHHHhCCCeecC--CCCCCCccEEEEEEE
Confidence 9999999999999864 2555 666665
No 16
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.93 E-value=1.2e-24 Score=205.78 Aligned_cols=275 Identities=13% Similarity=0.066 Sum_probs=189.5
Q ss_pred cceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHH
Q 018318 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (358)
Q Consensus 32 ~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~ 111 (358)
+.+.+.+++..+++.|++++.+.+..++ . ........++++++++++|+++++ ..+++++|++|+.
T Consensus 19 ~~~~~~~g~~~~~~~v~~a~~~~~~~~~-----------~-~~~~~~~~~l~~~la~~~g~~~~~--~i~~~~g~t~a~~ 84 (393)
T 2huf_A 19 NKLLMGPGPSNAPQRVLDAMSRPILGHL-----------H-PETLKIMDDIKEGVRYLFQTNNIA--TFCLSASGHGGME 84 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHTTSCCCCTT-----------S-HHHHHHHHHHHHHHHHHHTCCCSE--EEEESSCHHHHHH
T ss_pred CeEEecCCCCCCCHHHHHHHHhhhccCC-----------C-HHHHHHHHHHHHHHHHHhCCCCCc--EEEEcCcHHHHHH
Confidence 4567777888889999999987654321 0 112233345679999999987531 1244566788999
Q ss_pred HHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCC
Q 018318 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191 (358)
Q Consensus 112 ~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~ 191 (358)
.++.+++++||+|+++.+.|.+.. .. ..+...|.. ++.++.+ .++.+|++++++++++.++++|++++++
T Consensus 85 ~~~~~~~~~gd~vl~~~~~~~~~~---~~----~~~~~~g~~--~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~ 154 (393)
T 2huf_A 85 ATLCNLLEDGDVILIGHTGHWGDR---SA----DMATRYGAD--VRVVKSK-VGQSLSLDEIRDALLIHKPSVLFLTQGD 154 (393)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHH---HH----HHHHHTTCE--EEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred HHHHHHhCCCCEEEEECCCcchHH---HH----HHHHHcCCe--eEEEeCC-CCCCCCHHHHHHHHhccCCcEEEEEccC
Confidence 999999999999999998765421 00 011234554 4444444 3568999999999975478999887766
Q ss_pred CC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCCCCCC
Q 018318 192 YP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKG 266 (358)
Q Consensus 192 ~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~~~~~ 266 (358)
++ ...|+++|.++|++||+++|+|++|+.|... ..+. ++|++++|+||+|+|+.| |+++++++
T Consensus 155 nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~-----~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~------- 222 (393)
T 2huf_A 155 SSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAP-----MFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHR------- 222 (393)
T ss_dssp TTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBC-----CCTTTTTCSEEECCSSSTTCCCSSCEEEEECHH-------
T ss_pred CCccccCCHHHHHHHHHHcCCEEEEEcccccCCCC-----cchhhcCccEEEECCCcccccCCCeEEEEECHH-------
Confidence 54 5678999999999999999999998766431 2232 689999999999887777 89988763
Q ss_pred CCCCccccHHHHhhhh---c-------------C------CCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 018318 267 QPEGAVYDFEDKINFA---V-------------F------PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVA 324 (358)
Q Consensus 267 ~~~~~~~~~~~~~~~~---~-------------~------~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~ 324 (358)
+.+.+... . + ....++++...++++.++++.+...++++..++..+++++
T Consensus 223 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 294 (393)
T 2huf_A 223 --------AVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKR 294 (393)
T ss_dssp --------HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred --------HHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 33333221 0 0 0112345566666666677765433367788899999999
Q ss_pred HHHHHhhCCceeeeCC--CcceEEEEEc
Q 018318 325 LGNYLTGKGYSLVTGG--TENHLVLWDL 350 (358)
Q Consensus 325 l~~~L~~~G~~~~~~~--~~~~~~~v~~ 350 (358)
+.+.|++.|+++..+. ...+.+++.+
T Consensus 295 l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 322 (393)
T 2huf_A 295 LYRGLQDAGFELYADPKDRLSTVTTIKV 322 (393)
T ss_dssp HHHHHHHTTCCBSSCGGGBCTTEEEEEC
T ss_pred HHHHHHHcCCeeccCccccCCcEEEEEc
Confidence 9999999898876522 1234677765
No 17
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.93 E-value=2.8e-24 Score=203.41 Aligned_cols=273 Identities=13% Similarity=0.036 Sum_probs=188.7
Q ss_pred ceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCC-CCCccccccCChHHHH
Q 018318 33 GIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPT-QWGVNVQPYSGSPANF 111 (358)
Q Consensus 33 ~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~-~~~~~v~~~sGt~a~~ 111 (358)
.+.+.+++..++++|.+++.+.+..++ +.. ...+.+.+++++++++|++++ + .+++++|++|+.
T Consensus 35 ~~l~~~~~~~~~~~v~~a~~~~~~~~~-----------~~~-~~~~~~~~~~~la~~~g~~~~~~---v~~t~g~t~al~ 99 (393)
T 1vjo_A 35 RLLLGPGPSNAHPSVLQAMNVSPVGHL-----------DPA-FLALMDEIQSLLRYVWQTENPLT---IAVSGTGTAAME 99 (393)
T ss_dssp CEECSSSCCCCCHHHHHHHSSCCCCTT-----------SHH-HHHHHHHHHHHHHHHHTCCCSCE---EEESSCHHHHHH
T ss_pred ceeccCCCCCCCHHHHHHHhccccccc-----------CHH-HHHHHHHHHHHHHHHhCCCCCcE---EEEeCchHHHHH
Confidence 455666778889999999987664322 111 234445677999999999753 2 244556678999
Q ss_pred HHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCC
Q 018318 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191 (358)
Q Consensus 112 ~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~ 191 (358)
.++.+++++||+|++..+.|.+.. .. ..+...|..+ +.++.+ .++.+|++++++++++.++++|++++++
T Consensus 100 ~~~~~~~~~gd~Vl~~~~~~~~~~-~~------~~~~~~g~~~--~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~ 169 (393)
T 1vjo_A 100 ATIANAVEPGDVVLIGVAGYFGNR-LV------DMAGRYGADV--RTISKP-WGEVFSLEELRTALETHRPAILALVHAE 169 (393)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHH-HH------HHHHHTTCEE--EEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred HHHHhccCCCCEEEEEcCChhHHH-HH------HHHHHcCCce--EEEecC-CCCCCCHHHHHHHHhhCCceEEEEeccC
Confidence 999999999999999998776510 10 1223456544 444444 2568999999999975478888888765
Q ss_pred CC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCCCCCC
Q 018318 192 YP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKG 266 (358)
Q Consensus 192 ~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~~~~~ 266 (358)
|+ ...|+++|.++|++||+++|+|++|+.|.. +.++. ++|++++|+||+|++|.+ |+++++++
T Consensus 170 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~-----~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~------- 237 (393)
T 1vjo_A 170 TSTGARQPLEGVGELCREFGTLLLVDTVTSLGGV-----PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSR------- 237 (393)
T ss_dssp TTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTS-----CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHH-------
T ss_pred CCcceeccHHHHHHHHHHcCCEEEEECCccccCc-----CCcccccCccEEEEcCcccccCCCceEEEEECHH-------
Confidence 54 567899999999999999999999985532 22333 689999999999877665 99998773
Q ss_pred CCCCccccHHHHhhhh-----cC--------------CCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 018318 267 QPEGAVYDFEDKINFA-----VF--------------PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGN 327 (358)
Q Consensus 267 ~~~~~~~~~~~~~~~~-----~~--------------~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~ 327 (358)
+.+.+... .+ ....++++...++++.++++.....+++...++..++++++.+
T Consensus 238 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~ 309 (393)
T 1vjo_A 238 --------AIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWE 309 (393)
T ss_dssp --------HHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 33333210 00 1111255666666777777765333357788899999999999
Q ss_pred HHhhCCceeeeCCC--cceEEEEEc
Q 018318 328 YLTGKGYSLVTGGT--ENHLVLWDL 350 (358)
Q Consensus 328 ~L~~~G~~~~~~~~--~~~~~~v~~ 350 (358)
.|++.|+++..+.. ..+++++.+
T Consensus 310 ~L~~~g~~~~~~~~~~~~~~~~~~~ 334 (393)
T 1vjo_A 310 RLEDIGLSLHVEKEYRLPTLTTVCI 334 (393)
T ss_dssp HHHHTTCCBSSCGGGBCSSEEEEEC
T ss_pred HHHHcCCcccCCccccCCcEEEEEc
Confidence 99988988765221 134566665
No 18
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.93 E-value=3.5e-24 Score=202.61 Aligned_cols=271 Identities=17% Similarity=0.085 Sum_probs=185.9
Q ss_pred eEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHH
Q 018318 35 ELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAY 114 (358)
Q Consensus 35 ~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l 114 (358)
...+++..+++.|++++.+.+..++ +... .......++++++++|++++ ..+++++|++|+..++
T Consensus 12 l~~~~~~~~~~~v~~a~~~~~~~~~-----------~~~~-~~~~~~l~~~la~~~g~~~~---~v~~t~g~t~a~~~~~ 76 (392)
T 2z9v_A 12 TLTAGPVNAYPEVLRGLGRTVLYDY-----------DPAF-QLLYEKVVDKAQKAMRLSNK---PVILHGEPVLGLEAAA 76 (392)
T ss_dssp ECSSSCCCCCHHHHHHTTSCCCCTT-----------SHHH-HHHHHHHHHHHHHHTTCSSC---CEEESSCTHHHHHHHH
T ss_pred eecCCCcCCCHHHHHHHhccccccc-----------cHHH-HHHHHHHHHHHHHHhCCCCC---EEEEeCCchHHHHHHH
Confidence 3445677789999999987664311 1111 22233566899999999753 2355567788999999
Q ss_pred HhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhh-cCCcEEEEcCCCC-
Q 018318 115 TAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD-FRPKLIICGGSAY- 192 (358)
Q Consensus 115 ~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~-~~~~~v~~~~~~~- 192 (358)
.++++|||+|+++.++|.+.. .. ..+...|..+ +.++++ .++.+|++++++++++ .++++|++++++|
T Consensus 77 ~~~~~~gd~Vl~~~~~~~~~~-~~------~~~~~~g~~~--~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~np 146 (392)
T 2z9v_A 77 ASLISPDDVVLNLASGVYGKG-FG------YWAKRYSPHL--LEIEVP-YNEAIDPQAVADMLKAHPEITVVSVCHHDTP 146 (392)
T ss_dssp HHHCCTTCCEEEEESSHHHHH-HH------HHHHHHCSCE--EEEECC-TTSCCCHHHHHHHHHHCTTCCEEEEESEEGG
T ss_pred HHhcCCCCEEEEecCCcccHH-HH------HHHHHcCCce--EEeeCC-CCCCCCHHHHHHHHhcCCCCcEEEEeccCCC
Confidence 999999999999998765431 00 0112245544 444444 2567999999999964 3688888877665
Q ss_pred -CCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCCCCCCCC
Q 018318 193 -PRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQP 268 (358)
Q Consensus 193 -~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~~~~~~~ 268 (358)
|...|+++|.++|++||+++|+|++|+.|.. +.++. ++|++++|+||+++|+.| |+++++++
T Consensus 147 tG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-----~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~--------- 212 (392)
T 2z9v_A 147 SGTINPIDAIGALVSAHGAYLIVDAVSSFGGM-----KTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSER--------- 212 (392)
T ss_dssp GTEECCHHHHHHHHHHTTCEEEEECTTTBTTB-----SCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHH---------
T ss_pred CceeccHHHHHHHHHHcCCeEEEEcccccCCc-----ccccccccceEEEecCcccccCCCceeEEEECHH---------
Confidence 4577999999999999999999999986532 12232 689999999999888777 99998774
Q ss_pred CCccccHHHHhhhh-------------------cCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 018318 269 EGAVYDFEDKINFA-------------------VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL 329 (358)
Q Consensus 269 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 329 (358)
+.+.+... ......++++...++++.++++.+...+++...++..++++++.+.|
T Consensus 213 ------~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L 286 (392)
T 2z9v_A 213 ------AWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGV 286 (392)
T ss_dssp ------HHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 33333210 00111244555566666677776543336778889999999999999
Q ss_pred hhCCceeeeCCC---cceEEEEEc
Q 018318 330 TGKGYSLVTGGT---ENHLVLWDL 350 (358)
Q Consensus 330 ~~~G~~~~~~~~---~~~~~~v~~ 350 (358)
++.|+++..+.. ..+.+++.+
T Consensus 287 ~~~g~~~~~~~~~~~~~~~~~~~~ 310 (392)
T 2z9v_A 287 TAMGLSVWAASDSIASPTTTAVRT 310 (392)
T ss_dssp HHTTCCBSSSSGGGBCTTEEEEEC
T ss_pred HHcCCeeccCCccccCCceEEEEC
Confidence 988888764221 356677765
No 19
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.93 E-value=3e-24 Score=202.76 Aligned_cols=275 Identities=13% Similarity=0.072 Sum_probs=189.1
Q ss_pred cceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHH
Q 018318 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (358)
Q Consensus 32 ~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~ 111 (358)
+.+.+.+++..++++|++++.+.+..++ . .....+..++++++++++|.+.++ ..+++++|++|+.
T Consensus 23 ~~~~~~p~p~~~~~~v~~a~~~~~~~~~-----------~-~~~~~~~~~l~~~la~~~~~~~~~--~v~~~~gg~~al~ 88 (393)
T 3kgw_A 23 TRLLLGPGPSNLAPRVLAAGSLRMIGHM-----------Q-KEMLQIMEEIKQGIQYVFQTRNPL--TLVVSGSGHCAME 88 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHTTCCCCCTT-----------S-HHHHHHHHHHHHHHHHHHTCCCSE--EEEESCCTTTHHH
T ss_pred cceeccCCCCCCCHHHHHHhcccccCcc-----------c-HHHHHHHHHHHHHHHHHhCCCCCc--EEEEeCCcHHHHH
Confidence 5677888889999999999976543221 0 111233345679999999987642 1345677888999
Q ss_pred HHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCC
Q 018318 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191 (358)
Q Consensus 112 ~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~ 191 (358)
.++.+++++||+|++..+.|-+. .+. ..+...|..+..+ +.+ .++.+|+++++++++++++++|++++++
T Consensus 89 ~~~~~~~~~gd~vl~~~~~~~~~---~~~----~~~~~~g~~~~~~--~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~ 158 (393)
T 3kgw_A 89 TALFNLLEPGDSFLTGTNGIWGM---RAA----EIADRIGARVHQM--IKK-PGEHYTLQEVEEGLAQHKPVLLFLVHGE 158 (393)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHH---HHH----HHHHHTTCEEEEE--ECC-TTCCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred HHHHhcCCCCCEEEEEeCCchhH---HHH----HHHHHcCCceEEE--eCC-CCCCCCHHHHHHHHhhCCCcEEEEeccC
Confidence 99999999999999987543211 000 1223456544444 444 3568999999999987689999888776
Q ss_pred CC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCCCCCC
Q 018318 192 YP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKG 266 (358)
Q Consensus 192 ~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~~~~~ 266 (358)
|+ ...|+++|.++|++||+++|+|++|+.|... ..+. ++|++++|+||+|+|+.| |+++++++
T Consensus 159 nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~-----~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~------- 226 (393)
T 3kgw_A 159 SSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVP-----IYMDQQGIDIMYSSSQKVLNAPPGISLISFNDK------- 226 (393)
T ss_dssp TTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSC-----CCTTTTTCCEEEEESSSTTCCCSSCEEEEECHH-------
T ss_pred CcchhhccHHHHHHHHHHcCCEEEEECCccccCcc-----cchhhcCCCEEEecCcccccCCCceeEEEECHH-------
Confidence 54 5678999999999999999999998865321 2222 689999999999877766 88888774
Q ss_pred CCCCccccHHHHhhhhc----------------------CCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 018318 267 QPEGAVYDFEDKINFAV----------------------FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVA 324 (358)
Q Consensus 267 ~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~ 324 (358)
+.+.+.... .....++++...++++.++++.+...++++..++..+++++
T Consensus 227 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 298 (393)
T 3kgw_A 227 --------AKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAH 298 (393)
T ss_dssp --------HHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred --------HHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 222222100 00112345666667777777765443467888999999999
Q ss_pred HHHHHhhCCceeeeCC---CcceEEEEEc
Q 018318 325 LGNYLTGKGYSLVTGG---TENHLVLWDL 350 (358)
Q Consensus 325 l~~~L~~~G~~~~~~~---~~~~~~~v~~ 350 (358)
+.+.|++.|+++..+. ....++++.+
T Consensus 299 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 3kgw_A 299 LHKHLQEMGLKFFVKDPEIRLPTITTVTV 327 (393)
T ss_dssp HHHHHHHTTCCBSSSSGGGBCSSEEEEEC
T ss_pred HHHHHHHcCCeeccCChhhcCCeEEEEeC
Confidence 9999999998876322 1234455654
No 20
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.93 E-value=3.3e-24 Score=201.58 Aligned_cols=276 Identities=12% Similarity=0.021 Sum_probs=181.0
Q ss_pred hhcceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCcccc-ccCChH
Q 018318 30 QCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQ-PYSGSP 108 (358)
Q Consensus 30 ~~~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~-~~sGt~ 108 (358)
....+.+.+++..+|++|++++.+.+..++ . +....+.+++++++++++|++.+. ..++ +++|++
T Consensus 17 ~~~~~~~~pgp~~~~~~v~~a~~~~~~~~~-----------~-~~~~~~~~~~~~~la~~~g~~~~~--~~i~~~~ggt~ 82 (376)
T 3f0h_A 17 FQGMLNFTVGPVMSSEEVRAIGAEQVPYFR-----------T-TEFSSTMLENEKFMLEYAKAPEGS--KAVFMTCSSTG 82 (376)
T ss_dssp TSSCEECSSSSCCCCHHHHHHHTSCCCCCS-----------S-HHHHHHHHHHHHHHHHHHTCCTTC--EEEEESSCHHH
T ss_pred ccCceeecCCCCCCcHHHHHHhcCCCCCCC-----------C-HHHHHHHHHHHHHHHHHhCCCCCc--eEEEEcCChhH
Confidence 346788889999999999999987653221 1 112233346679999999997521 1243 455688
Q ss_pred HHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEc
Q 018318 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG 188 (358)
Q Consensus 109 a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~ 188 (358)
|+..++.++++|||+|++..+.+.++... ......|..+..++. + .++.+|++++++++. .++++|+++
T Consensus 83 al~~~~~~~~~~gd~vi~~~~~~~~~~~~-------~~~~~~g~~~~~v~~--~-~~~~~d~~~l~~~~~-~~~~~v~~~ 151 (376)
T 3f0h_A 83 SMEAVVMNCFTKKDKVLVIDGGSFGHRFV-------QLCEIHEIPYVALKL--E-HGKKLTKEKLYEYDN-QNFTGLLVN 151 (376)
T ss_dssp HHHHHHHHHCCTTCCEEEEESSHHHHHHH-------HHHHHTTCCEEEEEC--C-TTCCCCHHHHHTTTT-SCCCEEEEE
T ss_pred HHHHHHHhccCCCCeEEEEeCChhhHHHH-------HHHHHcCCceEEEeC--C-CCCCCCHHHHHHhhc-cCceEEEEe
Confidence 99999999999999999988643332110 012234554444433 3 357899999999775 478988887
Q ss_pred CCCC--CCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCC-
Q 018318 189 GSAY--PRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKP- 262 (358)
Q Consensus 189 ~~~~--~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~- 262 (358)
++++ |...|+++|.++|++||+++|+|++|+.|.. +..++ ++|++++|+||+++|+.| |+++++++..+
T Consensus 152 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~-----~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~ 226 (376)
T 3f0h_A 152 VDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLAD-----PFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVER 226 (376)
T ss_dssp SEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHH
T ss_pred cccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCc-----cccccccCccEEEecCcccccCCCceEEEEECHHHHHH
Confidence 5544 4677899999999999999999999876532 12232 689999999999986666 88877764210
Q ss_pred CC---CCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHhhCCceeee
Q 018318 263 PK---KGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP-AFKAYAKQVKANAVALGNYLTGKGYSLVT 338 (358)
Q Consensus 263 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~G~~~~~ 338 (358)
+. ..+... ++..............+++...++++.++++.+... +++...++..++++++++.|++.|+++..
T Consensus 227 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 303 (376)
T 3f0h_A 227 VEKSKVRTMYF---DLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVS 303 (376)
T ss_dssp HHTCCCCCSTT---CHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECC
T ss_pred hhcCCCCceee---cHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCc
Confidence 00 000000 111111110001112234444456667777765544 46788899999999999999999988765
No 21
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=1.1e-23 Score=198.84 Aligned_cols=277 Identities=12% Similarity=0.056 Sum_probs=187.1
Q ss_pred ccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh
Q 018318 38 ASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV 117 (358)
Q Consensus 38 a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~ 117 (358)
.....++|.|.+++.+.+...+. ++. ..+...++++.+++++++++|++.++ .+++++|++|+..++.++
T Consensus 37 ~~~~~~~~~v~~a~~~~~~~~~~--~~~-----~~~~~~~~~~~l~~~la~~~~~~~~~---i~~~~ggt~a~~~~~~~~ 106 (397)
T 3f9t_A 37 SMCSNVLPITRKIVDIFLETNLG--DPG-----LFKGTKLLEEKAVALLGSLLNNKDAY---GHIVSGGTEANLMALRCI 106 (397)
T ss_dssp CSCCCCCTHHHHHHHHHTTCCTT--SGG-----GBHHHHHHHHHHHHHHHHHTTCTTCE---EEEESCHHHHHHHHHHHH
T ss_pred EecCCCcHHHHHHHHHHHhhcCC--Ccc-----cChhHHHHHHHHHHHHHHHhCCCCCC---EEEecCcHHHHHHHHHHH
Confidence 34556788999999887754331 111 11234566667789999999998742 255566788999999888
Q ss_pred cCC-------------CCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcE
Q 018318 118 LEP-------------HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKL 184 (358)
Q Consensus 118 ~~~-------------gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~ 184 (358)
..+ ||+|++..+.|.++.. .+...|.. ++.++.+ +++.+|++++++++++.++++
T Consensus 107 ~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g~~--~~~v~~~-~~~~~d~~~l~~~i~~~~~~~ 174 (397)
T 3f9t_A 107 KNIWREKRRKGLSKNEHPKIIVPITAHFSFEK---------GREMMDLE--YIYAPIK-EDYTIDEKFVKDAVEDYDVDG 174 (397)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEETTCCTHHHH---------HHHHHTCE--EEEECBC-TTSSBCHHHHHHHHHHSCCCE
T ss_pred HHHHHhhhhhcccCCCCeEEEECCcchhHHHH---------HHHHcCce--eEEEeeC-CCCcCCHHHHHHHHhhcCCeE
Confidence 665 9999999998876431 23445654 4444544 367899999999997646888
Q ss_pred EEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhcccc-------CCCCC---cccEEEecCCccCCCC-Ce
Q 018318 185 IICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEA-------ANPFE---YCHIVTTTTHKSLRGP-RA 251 (358)
Q Consensus 185 v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~-------~~~~~---~~d~~~~s~~K~l~g~-~g 251 (358)
|++++++++ ...|+++|.++|++||+++|+|++|+.+....... ..+++ ++|++++|+||++.++ +.
T Consensus 175 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~~~~ 254 (397)
T 3f9t_A 175 IIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPS 254 (397)
T ss_dssp EEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCCCSSC
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCCCCCc
Confidence 877766654 57799999999999999999999987554321110 01222 6899999999998544 55
Q ss_pred eEEEEeCCCCCCCCCCCCCccccHHHHhhhhc-C------CCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 018318 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAV-F------PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVA 324 (358)
Q Consensus 252 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~ 324 (358)
|+++++++ .+.+.+.... + ....+++....+.++.+++..+...++.++.++..+++++
T Consensus 255 g~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 320 (397)
T 3f9t_A 255 GGILFKDI--------------GYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLY 320 (397)
T ss_dssp EEEEESSG--------------GGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCH--------------HHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88888664 2222221110 0 0011233333455556666655445567888999999999
Q ss_pred HHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 325 LGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 325 l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
+.+.|++.|+++.. +...+.+++...
T Consensus 321 l~~~L~~~g~~~~~-~~~~~~~~~~~~ 346 (397)
T 3f9t_A 321 LYKKLKENNFKPVI-EPILNIVAIEDE 346 (397)
T ss_dssp HHHHHHHTTCCBSS-CCSSSEEEEECT
T ss_pred HHHHHHHCCCEEEc-CCCccEEEEEeC
Confidence 99999999988654 345666777653
No 22
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.92 E-value=2.2e-24 Score=200.71 Aligned_cols=280 Identities=12% Similarity=-0.014 Sum_probs=187.5
Q ss_pred eeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHH
Q 018318 34 IELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAA 113 (358)
Q Consensus 34 ~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~ 113 (358)
+.+.+++..+++.|++++.+.+..++ +... .....+.++++++++|++++ ..+++++|++|+..+
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~~~-----------~~~~-~~~~~~l~~~la~~~g~~~~---~i~~~~g~t~a~~~~ 67 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLHHR-----------TEAA-REVFLKARGLLREAFRTEGE---VLILTGSGTLAMEAL 67 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCCTT-----------SHHH-HHHHHHHHHHHHHHHTCSSE---EEEEESCHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCCcc-----------CHHH-HHHHHHHHHHHHHHhCCCCc---eEEEcCchHHHHHHH
Confidence 56778899999999999987764211 1122 22233566899999999753 234555677899999
Q ss_pred HHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC
Q 018318 114 YTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP 193 (358)
Q Consensus 114 l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~ 193 (358)
+.++++|||+|+++.++|.++. .. ..+...|.. ++.++.+ .++.+|++++++ .++++|++++++|+
T Consensus 68 ~~~~~~~gd~vl~~~~~~~~~~-~~------~~~~~~g~~--~~~v~~~-~~~~~d~~~l~~----~~~~~v~~~~~~np 133 (352)
T 1iug_A 68 VKNLFAPGERVLVPVYGKFSER-FY------EIALEAGLV--VERLDYP-YGDTPRPEDVAK----EGYAGLLLVHSETS 133 (352)
T ss_dssp HHHHCCTTCEEEEEECSHHHHH-HH------HHHHHTTCE--EEEEECC-TTCCCCTTTSCC----SSCSEEEEESEETT
T ss_pred HHhccCCCCeEEEEeCCchhHH-HH------HHHHHcCCc--eEEEeCC-CCCCCCHHHHhc----cCCcEEEEEEecCC
Confidence 9999999999999998776542 10 011234554 4444444 356789988876 36888888876654
Q ss_pred --CccchHHHHHHHHHh--CCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCC-CCCC
Q 018318 194 --RDWDYARFRAVADKC--GALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPK-PPKK 265 (358)
Q Consensus 194 --~~~~l~~i~~la~~~--g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~-~~~~ 265 (358)
...|+++|.++|++| |+++|+|++|+.|.. +.++. ++|++++|+||++.|+.| |+++++++.. .+.+
T Consensus 134 tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~ 208 (352)
T 1iug_A 134 TGALADLPALARAFKEKNPEGLVGADMVTSLLVG-----EVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKP 208 (352)
T ss_dssp TTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTB-----CCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCC
T ss_pred cceecCHHHHHHHHHhhCCCCEEEEECCccccCc-----ceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhC
Confidence 577999999999999 999999999876532 12233 689999999999888876 8988876421 1111
Q ss_pred CCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceE
Q 018318 266 GQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHL 345 (358)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~ 345 (358)
.+ .. .++...+.........++++...++++.++++.+... +++..++..++++++.+.|++.|+++..+....+.
T Consensus 209 ~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 284 (352)
T 1iug_A 209 RG-YY--LDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAV 284 (352)
T ss_dssp CS-ST--TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTC
T ss_pred CC-ce--eeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeE
Confidence 00 00 0122111111011123455666666677777765433 67888899999999999999889987652224567
Q ss_pred EEEEcC
Q 018318 346 VLWDLR 351 (358)
Q Consensus 346 ~~v~~~ 351 (358)
+|+.+.
T Consensus 285 ~~~~~~ 290 (352)
T 1iug_A 285 AAFYLP 290 (352)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 888764
No 23
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.92 E-value=3.5e-24 Score=199.21 Aligned_cols=283 Identities=13% Similarity=0.025 Sum_probs=185.7
Q ss_pred eeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCC--CCCCCccccccCChHHHH
Q 018318 34 IELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD--PTQWGVNVQPYSGSPANF 111 (358)
Q Consensus 34 ~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~--~~~~~~~v~~~sGt~a~~ 111 (358)
+.+.+++..+|+.|++++.+.+..++ +... ....+++++++++++|++ .+ ..+++++|++|+.
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~~~-----------~~~~-~~~~~~l~~~la~~~g~~~~~~---~v~~t~g~t~a~~ 66 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRGHL-----------DPEV-LRVNRAIQERLAALFDPGEGAL---VAALAGSGSLGME 66 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCCTT-----------CHHH-HHHHHHHHHHHHHHHCCCTTCE---EEEESSCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHhccccccc-----------CHHH-HHHHHHHHHHHHHHhCCCCCCc---eEEEcCCcHHHHH
Confidence 45678899999999999987664311 1122 233446679999999986 32 2344455678999
Q ss_pred HHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCC
Q 018318 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191 (358)
Q Consensus 112 ~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~ 191 (358)
.++.++++ |+|+++.++|.++ ... ..+...|..+. .++.+ +++.+|+++++++++++++++|++++++
T Consensus 67 ~~~~~~~~--d~vl~~~~~~~~~-~~~------~~~~~~g~~~~--~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~ 134 (353)
T 2yrr_A 67 AGLANLDR--GPVLVLVNGAFSQ-RVA------EMAALHGLDPE--VLDFP-PGEPVDPEAVARALKRRRYRMVALVHGE 134 (353)
T ss_dssp HHHHTCSC--CCEEEEECSHHHH-HHH------HHHHHTTCCEE--EEECC-TTSCCCHHHHHHHHHHSCCSEEEEESEE
T ss_pred HHHHHhcC--CcEEEEcCCCchH-HHH------HHHHHcCCceE--EEeCC-CCCCCCHHHHHHHHHhCCCCEEEEEccC
Confidence 99988876 8999988766543 100 11234565444 44444 3578999999999975478888887766
Q ss_pred CC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCC-CCC
Q 018318 192 YP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKP-PKK 265 (358)
Q Consensus 192 ~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~-~~~ 265 (358)
|+ ...|+++|.++|++||+++|+|++|+.|.. +.++. ++|++++|+||+++|+.| |+++++++..+ +..
T Consensus 135 nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~ 209 (353)
T 2yrr_A 135 TSTGVLNPAEAIGALAKEAGALFFLDAVTTLGML-----PFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG 209 (353)
T ss_dssp TTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC
T ss_pred CCcceecCHHHHHHHHHHcCCeEEEEcCcccccc-----cccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc
Confidence 54 567999999999999999999999865532 12233 679999999999887766 99998874210 000
Q ss_pred CCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCC-Ccce
Q 018318 266 GQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGG-TENH 344 (358)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~-~~~~ 344 (358)
....+ .+..............++++...++++.++++.+...+++...++..++++++.+.|++.|+++..+. ..++
T Consensus 210 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 287 (353)
T 2yrr_A 210 -KRGWY-LDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPT 287 (353)
T ss_dssp -CSCST-TCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTT
T ss_pred -CCCcc-ccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCe
Confidence 00000 00000000000011223455566666667777654333678889999999999999998899887532 2566
Q ss_pred EEEEEc
Q 018318 345 LVLWDL 350 (358)
Q Consensus 345 ~~~v~~ 350 (358)
++++.+
T Consensus 288 ~~~~~~ 293 (353)
T 2yrr_A 288 VLVVRP 293 (353)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 677776
No 24
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.92 E-value=1.3e-23 Score=206.00 Aligned_cols=259 Identities=17% Similarity=0.113 Sum_probs=176.6
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcC--------------CCCeEEEecCCCCcccc
Q 018318 71 GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--------------PHDRIMGLDLPSGGHLT 136 (358)
Q Consensus 71 ~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~--------------~gd~Vl~~~~~~~~~~~ 136 (358)
..+...++|+.+++|+++++|.+...- ..+++++||+|+..++.++.. +++.|+++...|.++.
T Consensus 129 ~~p~~~~le~~~~~~l~~~~g~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~- 206 (511)
T 3vp6_A 129 IAPVFVLMEQITLKKMREIVGWSSKDG-DGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK- 206 (511)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCSSSC-EEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHH-
T ss_pred cCchHHHHHHHHHHHHHHHhCCCCCCC-ceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHH-
Confidence 346677899999999999999984211 235667778899888877643 5678888888776543
Q ss_pred ccccccCCccccccccee-EEeecccCCCCCCCCHHHHHHHHhhcC-----CcEEEEcCCC--CCCccchHHHHHHHHHh
Q 018318 137 HGYYTSGGKKISATSIYF-ESLPYKVNSSTGYIDYDKLEEKALDFR-----PKLIICGGSA--YPRDWDYARFRAVADKC 208 (358)
Q Consensus 137 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~id~~~l~~~l~~~~-----~~~v~~~~~~--~~~~~~l~~i~~la~~~ 208 (358)
+.+...|.+. .++.++++ +++.+|+++|+++|++.+ |++|+++.++ +|.+.|+++|+++|++|
T Consensus 207 --------~~~~~~g~g~~~~~~v~~d-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~ 277 (511)
T 3vp6_A 207 --------KAGAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKY 277 (511)
T ss_dssp --------HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHH
T ss_pred --------HHHHHcCCCCCcEEEeecC-CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHc
Confidence 2334455422 33444555 468999999999997642 7777765443 56788999999999999
Q ss_pred CCEEEEechhhhhhhhccccCCCC---CcccEEEecCCccCCCCCe-eEEEEeCCCCCCCCCCCCCccccHHHHhhhhcC
Q 018318 209 GALLLCDMAHISGLVAAQEAANPF---EYCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVF 284 (358)
Q Consensus 209 g~~lvvD~a~~~g~~~~~~~~~~~---~~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (358)
|+++++|++|+.|....+.+...+ .++|++++++||||++|.+ |+++++++ .+.........
T Consensus 278 ~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~--------------~~~~~~~~~~~ 343 (511)
T 3vp6_A 278 NLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK--------------GILQGCNQMHA 343 (511)
T ss_dssp TCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST--------------THHHHHHCCCC
T ss_pred CCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCH--------------HHHHHHhccCC
Confidence 999999999988776443222222 2679999999999988866 88888764 11111100000
Q ss_pred ------------------CCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-CceeeeC-CCcce
Q 018318 285 ------------------PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTG-GTENH 344 (358)
Q Consensus 285 ------------------~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~-~~~~~ 344 (358)
...+.+.. ....+++++++.+..++++++++++.++++++++.|++. ||++..+ .....
T Consensus 344 ~yl~~~~~~~~~~~~~~~~~~~~~r~-~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~ 422 (511)
T 3vp6_A 344 SYLFQQDKHYDVSYDTGDKAIQCGRH-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHT 422 (511)
T ss_dssp TTTCCSSCSSCGGGCCGGGSSCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSS
T ss_pred ccccCcccccccccCccCCCCCCCCc-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeE
Confidence 00111111 124456777777665677899999999999999999987 9998762 23344
Q ss_pred EEEEEcCCCCC
Q 018318 345 LVLWDLRPLGL 355 (358)
Q Consensus 345 ~~~v~~~~~~~ 355 (358)
++.+...|.++
T Consensus 423 ~v~f~~~p~~~ 433 (511)
T 3vp6_A 423 NVCFWYIPQSL 433 (511)
T ss_dssp CEEEEECCGGG
T ss_pred EEEEEEeCccc
Confidence 45555555544
No 25
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.92 E-value=3.4e-24 Score=203.92 Aligned_cols=267 Identities=14% Similarity=0.101 Sum_probs=175.8
Q ss_pred HHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCcccc--ccCChHHHHHHHHhhcCCCC
Q 018318 45 FAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQ--PYSGSPANFAAYTAVLEPHD 122 (358)
Q Consensus 45 ~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~--~~sGt~a~~~~l~a~~~~gd 122 (358)
.+|+++|.+........+. .+.|.-++...+.|| +.+++++|++. +.++ ++||++|+..++.++++|||
T Consensus 32 ~~vl~a~~~~~~~~~~~~~-~~~~~y~~~~~~~Le----~~lA~l~g~e~----alv~p~~~sGt~Ai~~al~all~~GD 102 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHP-STGYGYDDEGRDTLE----RVYATVFKTEA----ALVRPQIISGTHAISTVLFGILRPDD 102 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCC-CCTTCTTCHHHHHHH----HHHHHHHTCSE----EEEETTSCSHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHhhhhhhccCC-CcCCCCChhHHHHHH----HHHHHHhCCCc----EEEECCCccHHHHHHHHHHHhcCCCC
Confidence 6788888776432211111 112222445566777 77999999986 3333 78999999999999999999
Q ss_pred eEEEec-CCCCcccccccccc-CCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcC----CCCC--C
Q 018318 123 RIMGLD-LPSGGHLTHGYYTS-GGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGG----SAYP--R 194 (358)
Q Consensus 123 ~Vl~~~-~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~----~~~~--~ 194 (358)
+|++.. +.|++.....-.+. ....+...|. ++..++.+ +++.+|++++++++++ ++++|+++. ++++ .
T Consensus 103 ~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~--~~~~v~~~-~~g~~d~e~l~~ai~~-~tklV~i~~s~g~p~nptg~ 178 (409)
T 3jzl_A 103 ELLYITGQPYDTLEEIVGIRKQGQGSLKDFHI--GYSSVPLL-ENGDVDFPRIAKKMTP-KTKMIGIQRSRGYADRPSFT 178 (409)
T ss_dssp EEEECSSSCCTTHHHHHTSSSSSSSCTGGGTC--EEEECCCC-TTSCCCHHHHHHHCCT-TEEEEEEECSCTTSSSCCCC
T ss_pred EEEEeCCCCcHhHHHHHhcccchhhHHHHcCC--EEEEeCCC-CCCCcCHHHHHHhccC-CCeEEEEECCCCCCCCCcCc
Confidence 999988 77765431000000 0001233454 44555554 3678999999999975 789998887 6554 5
Q ss_pred ccchHHHHHHHHH--hCCEEEEechhhhhhhhccccCCCCC-cccEEEecCCccCCC---CCeeEEEEeCCCCCCCCCCC
Q 018318 195 DWDYARFRAVADK--CGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTHKSLRG---PRAGMIFYRKGPKPPKKGQP 268 (358)
Q Consensus 195 ~~~l~~i~~la~~--~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~~~s~~K~l~g---~~gG~i~~~~~~~~~~~~~~ 268 (358)
..|+++|.++|++ ||+++++|++|+.+... ..+.. ++|++++|+||+++| +.||++++++
T Consensus 179 v~~l~~I~~la~~~~~~~~livD~a~~~~~~~----~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~---------- 244 (409)
T 3jzl_A 179 IEKIKEMIVFVKNINPEVIVFVDNCYGEFVEY----QEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKE---------- 244 (409)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEECTTCTTTSS----CCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECH----------
T ss_pred cccHHHHHHHHHhhCCCCEEEEeCCccccccc----CCccccCCeEEEECccccCCccCCceEEEEEeCH----------
Confidence 6789999999999 99999999998765421 12334 799999999999865 4589999986
Q ss_pred CCccccHHHHhhhh-cCCCC--cCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcce-
Q 018318 269 EGAVYDFEDKINFA-VFPSL--QGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENH- 344 (358)
Q Consensus 269 ~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~- 344 (358)
++.+.+... ..++. ..++......+ +++.+ .....+++++.++++++++.|+++|+++++. .+|
T Consensus 245 -----~li~~l~~~~~~~~~g~~~g~~~~~~~~---~l~gl--~~~~~r~~~~~~~a~~la~~L~~~g~~v~p~--~~~~ 312 (409)
T 3jzl_A 245 -----ALVDLCGYRLTTPGIGREAGASLYSLLE---MYQGF--FLAPHVTAQAIKGARFTAAMLAEFGVEADPV--WDAP 312 (409)
T ss_dssp -----HHHHHHHHHHSCTTTGGGCCCCTTCHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCEEESC--TTSC
T ss_pred -----HHHHHHHHHhccccccccccccHHHHHH---HHHHH--hhHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CCCC
Confidence 455555442 12222 11222211111 22222 2346778889999999999999999998642 444
Q ss_pred ----EEEEEc
Q 018318 345 ----LVLWDL 350 (358)
Q Consensus 345 ----~~~v~~ 350 (358)
++.+.+
T Consensus 313 ~~~~i~~i~l 322 (409)
T 3jzl_A 313 RTDLIQSVSF 322 (409)
T ss_dssp CSSSCCEEEC
T ss_pred CccEEEEEEe
Confidence 555554
No 26
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.92 E-value=1.3e-23 Score=198.84 Aligned_cols=275 Identities=13% Similarity=0.001 Sum_probs=185.4
Q ss_pred cceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHH
Q 018318 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (358)
Q Consensus 32 ~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~ 111 (358)
+.+.+.+++..+++.|.+++.+.+..++ . ........+.++++++++|++++. ..+++++|++|+.
T Consensus 18 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~-----------~-~~~~~~~~~l~~~la~~~~~~~~~--~v~~~~g~t~al~ 83 (396)
T 2ch1_A 18 EKIMMGPGPSNCSKRVLTAMTNTVLSNF-----------H-AELFRTMDEVKDGLRYIFQTENRA--TMCVSGSAHAGME 83 (396)
T ss_dssp CCBCCSSSSCCCCHHHHHHTTSCCCCTT-----------C-HHHHHHHHHHHHHHHHHHTCCCSC--EEEESSCHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhccccccCC-----------C-hhHHHHHHHHHHHHHHHhCCCCCc--EEEECCcHHHHHH
Confidence 3456666777889999999876553221 1 112222335668999999997631 0244455678999
Q ss_pred HHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCC
Q 018318 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191 (358)
Q Consensus 112 ~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~ 191 (358)
.++.+++++||+|+++.+.|.++.. . ..+...|..+ +.++.+ .++.+|+++++++++++++++|++++++
T Consensus 84 ~~~~~~~~~gd~vl~~~~~~~~~~~-~------~~~~~~g~~~--~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~ 153 (396)
T 2ch1_A 84 AMLSNLLEEGDRVLIAVNGIWAERA-V------EMSERYGADV--RTIEGP-PDRPFSLETLARAIELHQPKCLFLTHGD 153 (396)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHHH-H------HHHHHTTCEE--EEEECC-TTSCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred HHHHHhcCCCCeEEEEcCCcccHHH-H------HHHHHcCCce--EEecCC-CCCCCCHHHHHHHHHhCCCCEEEEECCC
Confidence 9999999999999999988765420 0 0123456544 444444 3578999999999976578999887765
Q ss_pred CC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCCCCCC
Q 018318 192 YP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKG 266 (358)
Q Consensus 192 ~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~~~~~ 266 (358)
++ ...|+++|.++|++||+++|+|++|+.|.. +.++. ++|++++|+||++.++.| |+++++++
T Consensus 154 nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~------- 221 (396)
T 2ch1_A 154 SSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGV-----PFYMDKWEIDAVYTGAQKVLGAPPGITPISISPK------- 221 (396)
T ss_dssp TTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTB-----CCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHH-------
T ss_pred CCCceecCHHHHHHHHHHcCCEEEEEccccccCC-----ccchhhcCcCEEEEcCCccccCCCCeEEEEECHH-------
Confidence 54 567899999999999999999999886532 22333 679999999999887766 88888763
Q ss_pred CCCCccccHHHHhhhh-----------------c-----CCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 018318 267 QPEGAVYDFEDKINFA-----------------V-----FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVA 324 (358)
Q Consensus 267 ~~~~~~~~~~~~~~~~-----------------~-----~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~ 324 (358)
+.+.+... . .....++++...++++.++++.+...+++...++..+++++
T Consensus 222 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 293 (396)
T 2ch1_A 222 --------ALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQI 293 (396)
T ss_dssp --------HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred --------HHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22221110 0 01122344555566666677765333467788899999999
Q ss_pred HHHHHhhCCceeeeCCC---cceEEEEEc
Q 018318 325 LGNYLTGKGYSLVTGGT---ENHLVLWDL 350 (358)
Q Consensus 325 l~~~L~~~G~~~~~~~~---~~~~~~v~~ 350 (358)
+.+.|++.|++++.+.. ....+++.+
T Consensus 294 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 322 (396)
T 2ch1_A 294 LYEGLGKMGLDIFVKDPRHRLPTVTGIMI 322 (396)
T ss_dssp HHHHHHHHTCCBSSCSGGGBCTTEEEEEC
T ss_pred HHHHHHHCCCeeccCCccccCCceEEEEc
Confidence 99999988988765321 113567765
No 27
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.92 E-value=4.4e-23 Score=201.83 Aligned_cols=280 Identities=14% Similarity=0.084 Sum_probs=189.9
Q ss_pred CCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCC--CCCCCccccccCChHHHHHHHHhh
Q 018318 40 ENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD--PTQWGVNVQPYSGSPANFAAYTAV 117 (358)
Q Consensus 40 ~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~--~~~~~~~v~~~sGt~a~~~~l~a~ 117 (358)
.+.++|.+.+++.+.+...+. + +...+...++|+.+++++++++|++ +++....+++++|++|+..++.++
T Consensus 65 t~~~~~~v~~~l~~~~~~~~~--~-----~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~ 137 (502)
T 3hbx_A 65 TTWMEPECDKLIMSSINKNYV--D-----MDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAF 137 (502)
T ss_dssp CCCCCHHHHHHHHHTTTCBTT--C-----TTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhccCCC--C-----hhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHH
Confidence 356789999999877654331 1 1223556789989999999999998 432211233567788999888877
Q ss_pred cCC--------CC-----eEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcE
Q 018318 118 LEP--------HD-----RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKL 184 (358)
Q Consensus 118 ~~~--------gd-----~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~ 184 (358)
..+ || +|++..+.|.++. ..+...|+.+..+ +++++++.+|++++++++++ +|++
T Consensus 138 ~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~---------~~~~~~G~~~~~v--~~~~~~~~~d~~~l~~~i~~-~t~~ 205 (502)
T 3hbx_A 138 KRKWQNKRKAEGKPVDKPNIVTGANVQVCWE---------KFARYFEVELKEV--KLSEGYYVMDPQQAVDMVDE-NTIC 205 (502)
T ss_dssp HHHHHHHHHHTTCCCSCCEEEEETTCCHHHH---------HHHHHTTCEEEEE--CCBTTBCSCCHHHHHHHCCT-TEEE
T ss_pred HHHHhHHHHhcCCCCCCcEEEEcCCchHHHH---------HHHHHcCceeEEE--ecCCCcCcCCHHHHHHHHhh-CCEE
Confidence 544 77 8999887765432 1334567654444 44533489999999999975 6787
Q ss_pred EEEcCCC--CCCccchHHHHHHHHHh------CCEEEEechhhhhhh--hccccCCCCC--cccEEEecCCccCCCCCe-
Q 018318 185 IICGGSA--YPRDWDYARFRAVADKC------GALLLCDMAHISGLV--AAQEAANPFE--YCHIVTTTTHKSLRGPRA- 251 (358)
Q Consensus 185 v~~~~~~--~~~~~~l~~i~~la~~~------g~~lvvD~a~~~g~~--~~~~~~~~~~--~~d~~~~s~~K~l~g~~g- 251 (358)
|+++.++ +|...|+++|.++|+++ |+++++|+||+.+.. ..+.....+. ++|++++++||++.+|.|
T Consensus 206 v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~ 285 (502)
T 3hbx_A 206 VAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGI 285 (502)
T ss_dssp EEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSC
T ss_pred EEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCe
Confidence 7765544 45778999999999999 999999999875432 1222223333 899999999999877765
Q ss_pred eEEEEeCCCCCCCCCCCCCccccHHHHhhhh--------cCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 018318 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFA--------VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAV 323 (358)
Q Consensus 252 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~ 323 (358)
|+++++++. .+.+.+... ....+.++.....+++++++++.+..+++..++++..++++
T Consensus 286 G~~~~~~~~-------------~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~ 352 (502)
T 3hbx_A 286 GWVIWRNKE-------------DLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMI 352 (502)
T ss_dssp EEEEESSGG-------------GSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHH-------------HhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888776531 000100000 00111233333456667777777665677889999999999
Q ss_pred HHHHHHhhCC-ceeeeCCCcceEEEEEcC
Q 018318 324 ALGNYLTGKG-YSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 324 ~l~~~L~~~G-~~~~~~~~~~~~~~v~~~ 351 (358)
+|++.|++.| |++..+....+++.+.+.
T Consensus 353 ~l~~~L~~~~~~~~~~~~~~~~~v~f~~~ 381 (502)
T 3hbx_A 353 VLREGLEKTERFNIVSKDEGVPLVAFSLK 381 (502)
T ss_dssp HHHHHHHTTTCEEECSCSSSSSEEEEEES
T ss_pred HHHHHHHhCCCEEEEeCCCCceEEEEEec
Confidence 9999999985 998763245667777664
No 28
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.91 E-value=1.1e-23 Score=196.71 Aligned_cols=289 Identities=15% Similarity=0.085 Sum_probs=183.6
Q ss_pred ceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHH
Q 018318 33 GIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFA 112 (358)
Q Consensus 33 ~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~ 112 (358)
.+.+.+++..++++|++++.+.+. +.+..+ ..+...+ .++++++++|.+. +....+++++|++|+..
T Consensus 5 ~~~~~~gp~~~~~~v~~a~~~~~~------~~~~~~--~~~~~~~----l~~~la~~~g~~~-~~~~v~~~~g~t~a~~~ 71 (366)
T 1m32_A 5 YLLLTPGPLTTSRTVKEAMLFDSC------TWDDDY--NIGVVEQ----IRQQLTALATASE-GYTSVLLQGSGSYAVEA 71 (366)
T ss_dssp CEECSSSSCCCCHHHHHTTCCCCC------TTSHHH--HTTTHHH----HHHHHHHHHCSSS-SEEEEEEESCHHHHHHH
T ss_pred cccccCCCcCCCHHHHHHHhhhhc------CCCHHH--HHHHHHH----HHHHHHHHhCCCC-cCcEEEEecChHHHHHH
Confidence 467777877789999999876431 110000 0022333 4588999999321 11013555667889999
Q ss_pred HHHhhcCCCCeEEEec-CCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhc-CCcEEEEcCC
Q 018318 113 AYTAVLEPHDRIMGLD-LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF-RPKLIICGGS 190 (358)
Q Consensus 113 ~l~a~~~~gd~Vl~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~-~~~~v~~~~~ 190 (358)
++.+++++||+|++.+ +.|++.+. ..+...|..+.. ++.+ .++.+|+++++++++++ ++++|+++++
T Consensus 72 ~~~~~~~~gd~vi~~~~~~~~~~~~--------~~~~~~g~~~~~--v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~ 140 (366)
T 1m32_A 72 VLGSALGPQDKVLIVSNGAYGARMV--------EMAGLMGIAHHA--YDCG-EVARPDVQAIDAILNADPTISHIAMVHS 140 (366)
T ss_dssp HHHHSCCTTCCEEEEESSHHHHHHH--------HHHHHHTCCEEE--EECC-TTSCCCHHHHHHHHHHCTTCCEEEEESE
T ss_pred HHHHhcCCCCeEEEEeCCCccHHHH--------HHHHHhCCceEE--EeCC-CCCCCCHHHHHHHHhcCCCeEEEEEecc
Confidence 9999999999988775 44432110 112334554443 4444 35789999999999864 5788877766
Q ss_pred CC--CCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCC-CC
Q 018318 191 AY--PRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKP-PK 264 (358)
Q Consensus 191 ~~--~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~-~~ 264 (358)
++ |...|+++|.++|++||+++|+|++|+.|... .++. ++|++++|+||+++|+.| |+++++++..+ +.
T Consensus 141 ~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~-----~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~ 215 (366)
T 1m32_A 141 ETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIP-----MDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACK 215 (366)
T ss_dssp ETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC-----CCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCT
T ss_pred cCCcceecCHHHHHHHHHHcCCEEEEECCccccCcC-----ccccccCccEEEecCcccccCCCceEEEEECHHHHHhhc
Confidence 65 56778999999999999999999999866431 2232 689999999999977877 99999875321 11
Q ss_pred CCCCCCccccHHHHhhhh-cC-CCCcCCCChhHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHhhCCceeeeCC-
Q 018318 265 KGQPEGAVYDFEDKINFA-VF-PSLQGGPHNHQIGALAVALKQASTPA-FKAYAKQVKANAVALGNYLTGKGYSLVTGG- 340 (358)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~al~~al~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~- 340 (358)
....... +++....... .. ....++++...++++.++++.+...+ ++...+++.++++++.+.|++.|+++..+.
T Consensus 216 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 294 (366)
T 1m32_A 216 GHSRSLS-LDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDE 294 (366)
T ss_dssp TCCSCST-TCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGG
T ss_pred CCCCCcc-ccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCch
Confidence 1100000 0110100000 00 00112455566666677777654333 577888999999999999998888776421
Q ss_pred -CcceEEEEEcC
Q 018318 341 -TENHLVLWDLR 351 (358)
Q Consensus 341 -~~~~~~~v~~~ 351 (358)
.....+|+.+.
T Consensus 295 ~~~~~~~~~~~~ 306 (366)
T 1m32_A 295 LHSPIITAFYSP 306 (366)
T ss_dssp GBCSSEEEEECC
T ss_pred hcCceEEEEEcC
Confidence 23457888764
No 29
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.91 E-value=1.1e-23 Score=198.87 Aligned_cols=285 Identities=15% Similarity=0.133 Sum_probs=190.1
Q ss_pred cceeEeccCC--CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC--CCCCCCCccccccCC-
Q 018318 32 RGIELIASEN--FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH--LDPTQWGVNVQPYSG- 106 (358)
Q Consensus 32 ~~~~l~a~~~--~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g--~~~~~~~~~v~~~sG- 106 (358)
+.+.+..++. ..++.|.+++.+.+.... .+|+.. ..++++.+++++++.+| ++++ .|++++|
T Consensus 28 ~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~--------~~~l~~~la~~l~~~~g~~~~~~----~i~~~~g~ 94 (391)
T 3dzz_A 28 KELPMWIAEMDFKIAPEIMASMEEKLKVAA-FGYESV--------PAEYYKAVADWEEIEHRARPKED----WCVFASGV 94 (391)
T ss_dssp TCEECCSSCCSSCCCHHHHHHHHHHHTTCC-CCCBCC--------CHHHHHHHHHHHHHHHSCCCCGG----GEEEESCH
T ss_pred CceeccccCCCCCCCHHHHHHHHHHHhcCc-CCCCCC--------CHHHHHHHHHHHHHHhCCCCCHH----HEEECCCH
Confidence 5677776543 248999999988775421 223221 24566677789999988 4443 3445555
Q ss_pred hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEE
Q 018318 107 SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLII 186 (358)
Q Consensus 107 t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~ 186 (358)
++|+..++.+++++||+|++..+.|.++.. .+...|..+..++++.+..++.+|++++++++++.++++|+
T Consensus 95 ~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~ 165 (391)
T 3dzz_A 95 VPAISAMVRQFTSPGDQILVQEPVYNMFYS---------VIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMV 165 (391)
T ss_dssp HHHHHHHHHHHSCTTCEEEECSSCCHHHHH---------HHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEE
T ss_pred HHHHHHHHHHhCCCCCeEEECCCCcHHHHH---------HHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEE
Confidence 789999999999999999999998876431 23445654443333212223459999999999755789888
Q ss_pred EcCCCCC--Cc---cchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC-----ccc--EEEecCCccC--CCCCee
Q 018318 187 CGGSAYP--RD---WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-----YCH--IVTTTTHKSL--RGPRAG 252 (358)
Q Consensus 187 ~~~~~~~--~~---~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-----~~d--~~~~s~~K~l--~g~~gG 252 (358)
+++++|+ .. .++++|.++|++||+++|+|++|+.+ ...+....++. ..| ++++|+||++ +|.+.|
T Consensus 166 i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G 244 (391)
T 3dzz_A 166 FCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDL-VLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAA 244 (391)
T ss_dssp EESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTC-BCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCE
T ss_pred EECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccc-cCCCCCceehhhcCccccCcEEEEEeChhhccccchhhe
Confidence 8877665 34 57999999999999999999998643 33222122221 156 8999999986 566779
Q ss_pred EEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 018318 253 MIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (358)
Q Consensus 253 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (358)
+++++++ ++.+.+..........+++....+++.+++... ...++...+++.++++++.+.|++.
T Consensus 245 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~ 309 (391)
T 3dzz_A 245 CAIIPNP--------------DLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG-HDWLRELKQVLRDNFAYAREFLAKE 309 (391)
T ss_dssp EEECCSH--------------HHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCH--------------HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999743 455555432111111223444555555566552 2335778888999999999999984
Q ss_pred --CceeeeCCCcceEEEEEcCCCCC
Q 018318 333 --GYSLVTGGTENHLVLWDLRPLGL 355 (358)
Q Consensus 333 --G~~~~~~~~~~~~~~v~~~~~~~ 355 (358)
|+++.. +..+..+|+++...|.
T Consensus 310 ~~~~~~~~-~~~~~~~~~~~~~~~~ 333 (391)
T 3dzz_A 310 VPEVKVLD-SNASYLAWVDISALGM 333 (391)
T ss_dssp CTTSEECC-CCBSSEEEEECGGGCS
T ss_pred CCCcEEec-cCceEEEEEehhhcCC
Confidence 898875 4567778888765443
No 30
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.91 E-value=8.9e-24 Score=200.15 Aligned_cols=263 Identities=21% Similarity=0.214 Sum_probs=182.6
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCC
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGN-EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHD 122 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~-~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd 122 (358)
+|.+.+++.+.+.. ++.+++..++..|. +...++ ++++++++|.+. .+++++|++|+..++.++++|||
T Consensus 59 ~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~~~~~-----~i~~~sGt~a~~~~l~~~~~~gd 128 (399)
T 3tqx_A 59 HPALIKTAQTVVEQ-YGFGMASVRFICGTQTIHKEL----EKDISEFLGTDD-----TILYSSCFDANGGLFETLLGPED 128 (399)
T ss_dssp CHHHHHHHHHHHHH-HCSCCCSCCCCCCCBHHHHHH----HHHHHHHHTCSE-----EEEESCHHHHHHTTHHHHCCTTC
T ss_pred CHHHHHHHHHHHHH-hCCCCCCcCccccCchHHHHH----HHHHHHHHCCCc-----EEEECchHHHHHHHHHHhcCCCC
Confidence 68999998877754 33334433443332 334444 488999999874 36778999999999999999999
Q ss_pred eEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhc-----CCcEEEEcCCCCC--Cc
Q 018318 123 RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF-----RPKLIICGGSAYP--RD 195 (358)
Q Consensus 123 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~-----~~~~v~~~~~~~~--~~ 195 (358)
.|++..+.|+++.. .++..|. .++.++ .+|++++++++++. ++++|++++++++ ..
T Consensus 129 ~v~~~~~~~~~~~~---------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~ 191 (399)
T 3tqx_A 129 AIISDELNHASIID---------GIRLCKA--QRYRYK------NNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGII 191 (399)
T ss_dssp EEEEETTCCHHHHH---------HHHSCCS--EEEEEC------TTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEE
T ss_pred EEEECCcccHHHHH---------HHHHcCC--ceeEeC------CCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCc
Confidence 99999998876431 2344554 344443 26788999998763 6888888876655 46
Q ss_pred cchHHHHHHHHHhCCEEEEechhhhhhhhccccC----CCC-CcccEEEecCCccCCCCCeeEEEEeCCCCCCCCCCCCC
Q 018318 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAA----NPF-EYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEG 270 (358)
Q Consensus 196 ~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~----~~~-~~~d~~~~s~~K~l~g~~gG~i~~~~~~~~~~~~~~~~ 270 (358)
.|+++|.++|++||+++|+|++|+.|+....... ..+ .+.|++++|+||+++|++||++++++
T Consensus 192 ~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~~------------ 259 (399)
T 3tqx_A 192 ADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGHK------------ 259 (399)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCCEEEEECH------------
T ss_pred CCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCceEEEEcCH------------
Confidence 7899999999999999999999976653321100 011 25689999999999879999999887
Q ss_pred ccccHHHHhhhhcCCC-CcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEE
Q 018318 271 AVYDFEDKINFAVFPS-LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWD 349 (358)
Q Consensus 271 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~ 349 (358)
++.+.+.....+. ..++.+...++++..+++... ...+...+++.++++++.+.|++.|+++.. ..++.+|+.
T Consensus 260 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~ 333 (399)
T 3tqx_A 260 ---EIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQLVP--GNHPIIPVM 333 (399)
T ss_dssp ---HHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCBCC--CSSSEEEEE
T ss_pred ---HHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCcCC--CCCCEEEEE
Confidence 3444444321111 122344455555556666542 235778888999999999999999998763 455667776
Q ss_pred cC
Q 018318 350 LR 351 (358)
Q Consensus 350 ~~ 351 (358)
+.
T Consensus 334 ~~ 335 (399)
T 3tqx_A 334 LG 335 (399)
T ss_dssp EE
T ss_pred eC
Confidence 53
No 31
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.91 E-value=1.6e-23 Score=200.40 Aligned_cols=287 Identities=14% Similarity=0.141 Sum_probs=194.1
Q ss_pred hcceeEeccCC--CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCC--CCCCCCccccccCC
Q 018318 31 CRGIELIASEN--FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHL--DPTQWGVNVQPYSG 106 (358)
Q Consensus 31 ~~~~~l~a~~~--~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~--~~~~~~~~v~~~sG 106 (358)
++.+.|..+.. ..+|.|.+++.+.+.... .+|+.. ..++++.+++++++.+|. +.+ .|++++|
T Consensus 61 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~--------~~~l~~~l~~~l~~~~g~~~~~~----~v~~~~g 127 (421)
T 3l8a_A 61 PELLQMWVADMDFLPVPEIKEAIINYGREHI-FGYNYF--------NDDLYQAVIDWERKEHDYAVVKE----DILFIDG 127 (421)
T ss_dssp TTCEECCSSCCCSCCCHHHHHHHHHHHHHCC-SSCBCC--------CHHHHHHHHHHHHHHHCCCCCGG----GEEEESC
T ss_pred CCeeecccCCCCCCCCHHHHHHHHHHHhcCC-cCCCCC--------CHHHHHHHHHHHHHHhCCCCCHH----HEEEcCC
Confidence 35677765543 247999999988775421 233211 135556677999999984 443 2445555
Q ss_pred -hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEE
Q 018318 107 -SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185 (358)
Q Consensus 107 -t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v 185 (358)
++|+..++.+++++||+|++..+.|.++.. .+...|..+..++++....++.+|++++++++++.++++|
T Consensus 128 ~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~v 198 (421)
T 3l8a_A 128 VVPAISIALQAFSEKGDAVLINSPVYYPFAR---------TIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIY 198 (421)
T ss_dssp HHHHHHHHHHHHSCTEEEEEEEESCCHHHHH---------HHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCcHHHHH---------HHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEE
Confidence 569999999999999999999988876431 2334565444444431222357899999999975578999
Q ss_pred EEcCCCCC--Cc---cchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC-----C--cccEEEecCCccCC--CCCe
Q 018318 186 ICGGSAYP--RD---WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF-----E--YCHIVTTTTHKSLR--GPRA 251 (358)
Q Consensus 186 ~~~~~~~~--~~---~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~-----~--~~d~~~~s~~K~l~--g~~g 251 (358)
++++++++ .. .++++|.++|++||+++|+|++|+ ++...+....++ + +.++++.|++|+++ |.+.
T Consensus 199 il~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~ 277 (421)
T 3l8a_A 199 LLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQ-DLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKN 277 (421)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCC
T ss_pred EECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhhe
Confidence 88877765 33 479999999999999999999985 443333211122 1 34588999999974 5567
Q ss_pred eEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 018318 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (358)
Q Consensus 252 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 331 (358)
|+++++++ ++.+.+.........++++...++++.++++.. .+.+++..+++.++++++++.|++
T Consensus 278 G~~~~~~~--------------~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 342 (421)
T 3l8a_A 278 SFAIIQNE--------------SLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG-KPWLEELKTVIEGNIKLVIKELEA 342 (421)
T ss_dssp EEEECCSH--------------HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeEEcCCH--------------HHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998853 455555433211222345656666666666642 223477788899999999999998
Q ss_pred C-CceeeeCCCcceEEEEEcCCCCCC
Q 018318 332 K-GYSLVTGGTENHLVLWDLRPLGLT 356 (358)
Q Consensus 332 ~-G~~~~~~~~~~~~~~v~~~~~~~~ 356 (358)
. |+++.. +..+.++|+++...+++
T Consensus 343 ~~~i~~~~-~~~~~~~~v~~~~~~~~ 367 (421)
T 3l8a_A 343 KTKIKVME-PEGTYLVWLDFSAYAIA 367 (421)
T ss_dssp HCSCEEEC-CSBSSEEEEECGGGTCC
T ss_pred CCCceEeC-CCeeEEEEEeccccCCC
Confidence 5 898876 56788889998765444
No 32
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.91 E-value=9.5e-23 Score=192.01 Aligned_cols=288 Identities=12% Similarity=0.036 Sum_probs=184.4
Q ss_pred cceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCC----CCCCCccccccCCh
Q 018318 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD----PTQWGVNVQPYSGS 107 (358)
Q Consensus 32 ~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~----~~~~~~~v~~~sGt 107 (358)
+.+.+.+++..++++|++++.+....++ + .... ......+++++++++.. ++ ..+++++|+
T Consensus 5 ~~~~~~p~p~~~~~~v~~a~~~~~~~~~---~--------~~~~-~~~~~~~~~l~~~~~~~~~~~~~---~v~~~~g~t 69 (385)
T 2bkw_A 5 VDTLLIPGPIILSGAVQKALDVPSLGHT---S--------PEFV-SIFQRVLKNTRAVFKSAAASKSQ---PFVLAGSGT 69 (385)
T ss_dssp CCEECSSSSCCCCHHHHHTTSCCCCCTT---S--------HHHH-HHHHHHHHHHHHHTTCCGGGTCE---EEEEESCTT
T ss_pred cceeecCCCcCchHHHHHHHhccccccC---C--------HHHH-HHHHHHHHHHHHHhCCCCCCCCc---eEEEcCchH
Confidence 4567778888999999999876553211 1 1121 12234557788888764 22 235566778
Q ss_pred HHHHHHHHhhc---CCCCeEEEecCC-CCccccccccccCCcccccccceeEEeeccc-CCCCCCCCHHHHHHHHhhcCC
Q 018318 108 PANFAAYTAVL---EPHDRIMGLDLP-SGGHLTHGYYTSGGKKISATSIYFESLPYKV-NSSTGYIDYDKLEEKALDFRP 182 (358)
Q Consensus 108 ~a~~~~l~a~~---~~gd~Vl~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~id~~~l~~~l~~~~~ 182 (358)
+|+..++.++. ++||+|+++... ++... . ..+...|.. ++.+++ + .++.+|++++++++++.++
T Consensus 70 ~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~--~------~~~~~~g~~--~~~v~~~~-~~~~~d~~~l~~~l~~~~~ 138 (385)
T 2bkw_A 70 LGWDIFASNFILSKAPNKNVLVVSTGTFSDRF--A------DCLRSYGAQ--VDVVRPLK-IGESVPLELITEKLSQNSY 138 (385)
T ss_dssp HHHHHHHHHHSCTTCSCCEEEEECSSHHHHHH--H------HHHHHTTCE--EEEECCSS-TTSCCCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhccCCCCCeEEEEcCCcchHHH--H------HHHHHcCCc--eEEEecCC-CCCCCCHHHHHHHHhcCCC
Confidence 99999999987 899999887432 22110 0 112345654 444454 4 3678999999999976578
Q ss_pred cEEEEcCCCCC--CccchHHHHHHHHHh--CCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEE
Q 018318 183 KLIICGGSAYP--RDWDYARFRAVADKC--GALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIF 255 (358)
Q Consensus 183 ~~v~~~~~~~~--~~~~l~~i~~la~~~--g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~ 255 (358)
++|++++++++ ...|+++|.++|++| |+++|+|++|+.|... .++. ++|++++|+||+++||.| |+++
T Consensus 139 ~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~-----~~~~~~~~d~~~~s~~K~~~~~~G~G~~~ 213 (385)
T 2bkw_A 139 GAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEE-----FEFDEWGVDFALTASQKAIGAPAGLSISL 213 (385)
T ss_dssp SEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSC-----CCTTTTTCSEEEEESSSTTCCCSCEEEEE
T ss_pred CEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcc-----ccccccCceEEEecCccccccCCcceEEE
Confidence 99888776554 577999999999999 9999999999866431 2233 689999999999988777 9998
Q ss_pred EeCCCC--CCC------CCCCCCccccHHHHhhhhcC--CCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 018318 256 YRKGPK--PPK------KGQPEGAVYDFEDKINFAVF--PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVAL 325 (358)
Q Consensus 256 ~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l 325 (358)
++++.. .+. ..+.......+......... ....++++...++++.++++.+...++++..++.+++++++
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 293 (385)
T 2bkw_A 214 CSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWF 293 (385)
T ss_dssp ECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 876411 000 00000000000000011100 00113455666666677777654333677788899999999
Q ss_pred HHHH-hhCCceeeeCC----CcceEEEEEc
Q 018318 326 GNYL-TGKGYSLVTGG----TENHLVLWDL 350 (358)
Q Consensus 326 ~~~L-~~~G~~~~~~~----~~~~~~~v~~ 350 (358)
.+.| ++.|+++..+. ...+.+|+.+
T Consensus 294 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (385)
T 2bkw_A 294 KDSLVNGLQLTSVSRYPSNMSAHGLTAVYV 323 (385)
T ss_dssp HHHHHTTTCCEESSCSSSTTBCSSCEEEEC
T ss_pred HHHHHHhcCceecccCcccccCCceEEEec
Confidence 9999 88898876421 2466788775
No 33
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.91 E-value=4.7e-23 Score=195.38 Aligned_cols=282 Identities=14% Similarity=0.072 Sum_probs=184.6
Q ss_pred ceeEec-cCCCCCHHHHHHHhcccccCCCCCCCCC-CCCCCchhHHHHHHHHHHHHHHhcCC-CCCCCCccccccCChHH
Q 018318 33 GIELIA-SENFTSFAVIEALGSALTNKYSEGMPGN-RYYGGNEFIDEIENLCRSRALQTFHL-DPTQWGVNVQPYSGSPA 109 (358)
Q Consensus 33 ~~~l~a-~~~~~~~~V~~a~~~~~~~~~~~g~~~~-~~~~~~~~~~~le~~~~~~la~~~g~-~~~~~~~~v~~~sGt~a 109 (358)
.+.|.. +++..|+.|.+++.+.+.... +++.. .+..+... .....+.++++++++|. +++ ..+++++|++|
T Consensus 24 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~la~~~~~~~~~---~v~~~~g~t~a 97 (406)
T 1kmj_A 24 LAYLDSAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQA-TEKMENVRKRASLFINARSAE---ELVFVRGTTEG 97 (406)
T ss_dssp CEECCTTTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHH-HHHHHHHHHHHHHHTTCSCGG---GEEEESSHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhhc--CCCCCCcchHHHHH-HHHHHHHHHHHHHHcCCCCCC---eEEEeCChhHH
Confidence 344443 345678999999988875432 22221 01001111 22233566899999998 333 23444555689
Q ss_pred HHHHHHhh----cCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEE
Q 018318 110 NFAAYTAV----LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185 (358)
Q Consensus 110 ~~~~l~a~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v 185 (358)
+..++.++ +++||+|+++.+.|.+.+.... ..+...|.. ++.++.+ +++.+|++++++++++ ++++|
T Consensus 98 ~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~~~~~g~~--~~~~~~~-~~~~~d~~~l~~~l~~-~~~~v 168 (406)
T 1kmj_A 98 INLVANSWGNSNVRAGDNIIISQMEHHANIVPWQ-----MLCARVGAE--LRVIPLN-PDGTLQLETLPTLFDE-KTRLL 168 (406)
T ss_dssp HHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHH-----HHHHHHTCE--EEEECBC-TTSCBCGGGHHHHCCT-TEEEE
T ss_pred HHHHHHHhhhhcCCCCCEEEEecccchHHHHHHH-----HHHHhCCCE--EEEEecC-CCCCcCHHHHHHHhcc-CCeEE
Confidence 99999999 8999999999998876542110 012234544 4444544 3578999999999975 78888
Q ss_pred EEcCCCC--CCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCC
Q 018318 186 ICGGSAY--PRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGP 260 (358)
Q Consensus 186 ~~~~~~~--~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~ 260 (358)
+++++++ |...|+++|.++|++||+++|+|++|+.|.. +.++. ++|++++|+||++ |+.| |+++++++
T Consensus 169 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~-----~~~~~~~~~d~~~~s~~K~~-g~~G~G~~~~~~~- 241 (406)
T 1kmj_A 169 AITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHH-----PVDVQALDCDFYVFSGHKLY-GPTGIGILYVKEA- 241 (406)
T ss_dssp EEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHH-
T ss_pred EEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCC-----CCcccccCCCEEEEEchhcc-CCCCcEEEEEeHH-
Confidence 8877655 4678899999999999999999999986642 11222 6899999999987 6776 99998763
Q ss_pred CCCCCCCCCCccccHHHHhhhhcC---------------------CCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHH
Q 018318 261 KPPKKGQPEGAVYDFEDKINFAVF---------------------PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVK 319 (358)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~ 319 (358)
+.+.+..... ....++++...++++.++++.+...+++...++..
T Consensus 242 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 307 (406)
T 1kmj_A 242 --------------LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQ 307 (406)
T ss_dssp --------------HHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred --------------HHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 3333221110 01123455555666656666654334567788889
Q ss_pred HHHHHHHHHHhhC-CceeeeCCCcceEEEEEc
Q 018318 320 ANAVALGNYLTGK-GYSLVTGGTENHLVLWDL 350 (358)
Q Consensus 320 ~~~~~l~~~L~~~-G~~~~~~~~~~~~~~v~~ 350 (358)
++++++.+.|++. |+++..+...+..+++.+
T Consensus 308 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 339 (406)
T 1kmj_A 308 NLMHYALSQLESVPDLTLYGPQNRLGVIAFNL 339 (406)
T ss_dssp HHHHHHHHHHTTSTTEEEESCTTCCSEEEEEE
T ss_pred HHHHHHHHHHhcCCCeEEecCCCcCCEEEEEE
Confidence 9999999999987 898875311344455554
No 34
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.91 E-value=3.8e-23 Score=198.33 Aligned_cols=264 Identities=19% Similarity=0.184 Sum_probs=182.5
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCC
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGN-EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPH 121 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~-~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~g 121 (358)
.++.|.+++.+.+.. ++.+++++++..|. +...+++ +++++++|++. .+++++|++|+..++.+++++|
T Consensus 79 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~G~~~~~~~l~----~~la~~~g~~~-----~i~~~sGs~a~~~al~~l~~~g 148 (427)
T 2w8t_A 79 FDPDVIAAGKEALEK-FGSGTCGSRMLNGTFHDHMEVE----QALRDFYGTTG-----AIVFSTGYMANLGIISTLAGKG 148 (427)
T ss_dssp GCHHHHHHHHHHHHH-HCSCCCSCTTTTCCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHH-hCCCCcccccccCCcHHHHHHH----HHHHHHhCCCc-----eEEecCcHHHHHHHHHHhcCCC
Confidence 479999999887754 33344444444443 4444554 88999999864 4778999999999999999999
Q ss_pred CeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhc---CCcEEEEcCCCC--CCcc
Q 018318 122 DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF---RPKLIICGGSAY--PRDW 196 (358)
Q Consensus 122 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~---~~~~v~~~~~~~--~~~~ 196 (358)
|.|++..+.|++... .+...|. .++.++ .+|++++++++++. ++++|+++++++ |...
T Consensus 149 d~vl~~~~~h~~~~~---------~~~~~g~--~~~~~~------~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~ 211 (427)
T 2w8t_A 149 EYVILDADSHASIYD---------GCQQGNA--EIVRFR------HNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIA 211 (427)
T ss_dssp CEEEEETTCCHHHHH---------HHHHSCS--EEEEEC------TTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEEC
T ss_pred CEEEECCcccHHHHH---------HHHHcCC--eeEEeC------CCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCcc
Confidence 999999988876431 2334554 344443 47999999999764 578888876544 4567
Q ss_pred chHHHHHHHHHhCCEEEEechhhhhhhhc-cc-cC--CCCC-cccEEEecCCccCCCCCeeEEEEeCCCCCCCCCCCCCc
Q 018318 197 DYARFRAVADKCGALLLCDMAHISGLVAA-QE-AA--NPFE-YCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGA 271 (358)
Q Consensus 197 ~l~~i~~la~~~g~~lvvD~a~~~g~~~~-~~-~~--~~~~-~~d~~~~s~~K~l~g~~gG~i~~~~~~~~~~~~~~~~~ 271 (358)
|+++|.++|++||+++|+|++|+.|.... +. .. ..+. ++|++++|+||+++ +.||+++++++
T Consensus 212 ~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g-~~gG~v~~~~~------------ 278 (427)
T 2w8t_A 212 PLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG-TVGGFVVSNHP------------ 278 (427)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC-SCCEEEEECCT------------
T ss_pred CHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc-cCCCEEEeCHH------------
Confidence 89999999999999999999998765431 10 00 1122 67999999999984 78899999875
Q ss_pred cccHHHHhhhhcCCC-CcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEc
Q 018318 272 VYDFEDKINFAVFPS-LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDL 350 (358)
Q Consensus 272 ~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~ 350 (358)
+.+.+.....++ ..++.+...++++.++++.+.. .+..++++.++++++++.|++.|+++..+...++++|+.+
T Consensus 279 ---l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 353 (427)
T 2w8t_A 279 ---KFEAVRLACRPYIFTASLPPSVVATATTSIRKLMT--AHEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVML 353 (427)
T ss_dssp ---TGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCSSEEEEEE
T ss_pred ---HHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCEEEEEE
Confidence 223332210000 1223444555555566766532 3577888999999999999998998763222567788876
Q ss_pred C
Q 018318 351 R 351 (358)
Q Consensus 351 ~ 351 (358)
.
T Consensus 354 ~ 354 (427)
T 2w8t_A 354 E 354 (427)
T ss_dssp S
T ss_pred C
Confidence 3
No 35
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.91 E-value=2.1e-23 Score=195.68 Aligned_cols=274 Identities=10% Similarity=0.005 Sum_probs=177.6
Q ss_pred ceeEec--cCCCCCHHHHHHHhcccccCCCCCCC--CCCCCCCchhHHHHHHHHHHH-HHHhcCCCCCCCCccccccCC-
Q 018318 33 GIELIA--SENFTSFAVIEALGSALTNKYSEGMP--GNRYYGGNEFIDEIENLCRSR-ALQTFHLDPTQWGVNVQPYSG- 106 (358)
Q Consensus 33 ~~~l~a--~~~~~~~~V~~a~~~~~~~~~~~g~~--~~~~~~~~~~~~~le~~~~~~-la~~~g~~~~~~~~~v~~~sG- 106 (358)
.+.+.. +...+++.|.+++.+.+.......+. ....+...+...++ +++ +++++|++ . +++++|
T Consensus 9 ~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~la~~~~~~-~-----v~~~~g~ 78 (371)
T 2e7j_A 9 FINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDF----IHNQLPKFLGCD-V-----ARVTNGA 78 (371)
T ss_dssp CEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHH----HHTHHHHHTTSS-E-----EEEESSH
T ss_pred cEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHH----HHHHHHHHcCCC-E-----EEEeCCh
Confidence 344443 35667999999998877542110110 00001112334444 488 99999987 2 344555
Q ss_pred hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhh----cCC
Q 018318 107 SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD----FRP 182 (358)
Q Consensus 107 t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~----~~~ 182 (358)
++|+..++.+++++||+|++..+.|.++.. .+...|..+..++++.+ +++.+|++++++++++ .++
T Consensus 79 t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~ 148 (371)
T 2e7j_A 79 REAKFAVMHSLAKKDAWVVMDENCHYSSYV---------AAERAGLNIALVPKTDY-PDYAITPENFAQTIEETKKRGEV 148 (371)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCHHHHH---------HHHHTTCEEEEECCCCT-TTCCCCHHHHHHHHHHHTTTSCE
T ss_pred HHHHHHHHHHHhCCCCEEEEccCcchHHHH---------HHHHcCCeEEEeecccC-CCCCcCHHHHHHHHHhhcccCCe
Confidence 789999999999999999999998876541 23445654444431144 3578999999999974 367
Q ss_pred cEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCC-eeEEEEe
Q 018318 183 KLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPR-AGMIFYR 257 (358)
Q Consensus 183 ~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~-gG~i~~~ 257 (358)
++|++++++++ ...|+++|.++|++||+++|+|++|+.|.. +.++. ++|++++|+||+++++. +|+++++
T Consensus 149 ~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~ 223 (371)
T 2e7j_A 149 VLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRM-----PVSLKEIGADFIVGSGHKSMAASGPIGVMGMK 223 (371)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTB-----CCCHHHHTCSEEEEEHHHHSSCCSSCEEEEEC
T ss_pred EEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCC-----CCChhhcCCCEEEecCCcCCCCCCCcEEEEEe
Confidence 88888877654 577999999999999999999999886542 11222 68999999999987654 4999998
Q ss_pred CCCCCCCCCCCCCccccHHHH-hhhhcCCCC------cCCCChhHHHHHHHHHHHhccHHHHHHHHHH--HHHHHHHHHH
Q 018318 258 KGPKPPKKGQPEGAVYDFEDK-INFAVFPSL------QGGPHNHQIGALAVALKQASTPAFKAYAKQV--KANAVALGNY 328 (358)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~al~~al~~~~~~~~~~~~~~~--~~~~~~l~~~ 328 (358)
++..+ . +......+. .++++...++++.++++.+.. .+.+++ .++++++.+.
T Consensus 224 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~ 284 (371)
T 2e7j_A 224 EEWAE---------------IVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFAAE 284 (371)
T ss_dssp TTTTT---------------TTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHHHH
T ss_pred chhhh---------------hhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 86321 1 111111000 233455555565566655421 456667 8889999999
Q ss_pred HhhCCceeeeCCC-cceEEEEEc
Q 018318 329 LTGKGYSLVTGGT-ENHLVLWDL 350 (358)
Q Consensus 329 L~~~G~~~~~~~~-~~~~~~v~~ 350 (358)
|++.|+++..+.. .++.+|+++
T Consensus 285 L~~~~~~~~~~~~~~~~~~~~~~ 307 (371)
T 2e7j_A 285 MEKLGIKQLGDNPHNHDLMFFHA 307 (371)
T ss_dssp HHHTTCEEESSSSCCSSEEEEEC
T ss_pred HHHcCcEEecCCCccCceEEEEC
Confidence 9988998875321 466788875
No 36
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.91 E-value=3.9e-23 Score=197.40 Aligned_cols=273 Identities=16% Similarity=0.145 Sum_probs=182.7
Q ss_pred hcceeEe-ccCCCCCHHHHHHHhcccc--cCCCCCCCCC-CCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCC
Q 018318 31 CRGIELI-ASENFTSFAVIEALGSALT--NKYSEGMPGN-RYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSG 106 (358)
Q Consensus 31 ~~~~~l~-a~~~~~~~~V~~a~~~~~~--~~~~~g~~~~-~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sG 106 (358)
++.+-|. ++...+++.|++++.+.+. ..+ +++.. .+..+ .......+.+++++++++|+++++ .+++++|
T Consensus 21 ~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~~~~~---v~~~~gg 94 (423)
T 3lvm_A 21 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTF--GNPASRSHRFG-WQAEEAVDIARNQIADLVGADPRE---IVFTSGA 94 (423)
T ss_dssp CSSEECBTTTCCCCCHHHHHHHTTSSSTTSCC--SCTTCTTSHHH-HHHHHHHHHHHHHHHHHHTCCGGG---EEEESSH
T ss_pred CCCEeecCCCcCCCCHHHHHHHHHHHhhcccc--cCCCccccchh-HHHHHHHHHHHHHHHHHcCCCCCe---EEEeCCh
Confidence 3444444 4566789999999998876 444 23332 12111 112233346679999999998642 3445566
Q ss_pred hHHHHHHHHhhcC----CCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCC
Q 018318 107 SPANFAAYTAVLE----PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRP 182 (358)
Q Consensus 107 t~a~~~~l~a~~~----~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~ 182 (358)
++|+..++.++++ |||+|+++.++|+++.... ..+...|.. ++.++.+ .++.+|++++++++++ ++
T Consensus 95 t~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~------~~~~~~g~~--~~~v~~~-~~~~~d~~~l~~~i~~-~~ 164 (423)
T 3lvm_A 95 TESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTC------RQLEREGFE--VTYLAPQ-RNGIIDLKELEAAMRD-DT 164 (423)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHH------HHHHHTTCE--EEEECCC-TTSCCCHHHHHHHCCT-TE
T ss_pred HHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHH------HHHHHcCCE--EEEeccC-CCCccCHHHHHHhcCC-Cc
Confidence 7899999988863 8999999999887653211 011223544 4445544 3678999999999975 78
Q ss_pred cEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEe
Q 018318 183 KLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYR 257 (358)
Q Consensus 183 ~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~ 257 (358)
++|++++++++ ...|+++|.++|++||+++|+|++|+.|... ..+. ++|++++|+||++ |+.| |+++++
T Consensus 165 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~-----~~~~~~~~di~~~s~sK~~-g~~g~G~~~~~ 238 (423)
T 3lvm_A 165 ILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLP-----IDLSQLKVDLMSFSGHKIY-GPKGIGALYVR 238 (423)
T ss_dssp EEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC-----CCTTTSCCSEEEEESTTTT-SCSSCEEEEEC
T ss_pred EEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCC-----cChhhcCCCEEEechHHhc-CCCCeEEEEEe
Confidence 88888776654 5779999999999999999999998765431 2222 6899999999965 5554 898888
Q ss_pred CCCCC-CCCCCCCCccccHHHHhhh--hcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-C
Q 018318 258 KGPKP-PKKGQPEGAVYDFEDKINF--AVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-G 333 (358)
Q Consensus 258 ~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G 333 (358)
++... +.+ .... .......++++...++++.+++..+. ..++...++..++++++++.|++. |
T Consensus 239 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~ 305 (423)
T 3lvm_A 239 RKPRVRIEA------------QMHGGGHERGMRSGTLPVHQIVGMGEAYRIAK-EEMATEMERLRGLRNRLWNGIKDIEE 305 (423)
T ss_dssp BTTBCCCCC------------SSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ccccCCCCc------------cccCCcccccccCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 75321 100 0000 00011123455666666667776654 336788899999999999999988 8
Q ss_pred ceeee
Q 018318 334 YSLVT 338 (358)
Q Consensus 334 ~~~~~ 338 (358)
+++..
T Consensus 306 ~~~~~ 310 (423)
T 3lvm_A 306 VYLNG 310 (423)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 98875
No 37
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.91 E-value=3.7e-23 Score=196.53 Aligned_cols=282 Identities=11% Similarity=0.033 Sum_probs=184.6
Q ss_pred ceeEec-cCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHH
Q 018318 33 GIELIA-SENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (358)
Q Consensus 33 ~~~l~a-~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~ 111 (358)
.+.|.. +...+++.|++++.+.+...+ +++++.|..+... ....+++++++++++|++++ ..+++++|++++.
T Consensus 27 ~~~ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~---~v~~~~g~t~al~ 100 (406)
T 3cai_A 27 WVHFDAPAGMLIPDSVATTVSTAFRRSG--ASTVGAHPSARRS-AAVLDAAREAVADLVNADPG---GVVLGADRAVLLS 100 (406)
T ss_dssp CEECBGGGCCCCCHHHHHHHHHHHHHCC--SSSCSSSHHHHHH-HHHHHHHHHHHHHHHTCCGG---GEEEESCHHHHHH
T ss_pred eEEEeCCCcCCCCHHHHHHHHHHHHhcC--CCCCCccHHHHHH-HHHHHHHHHHHHHHhCCCCC---eEEEeCChHHHHH
Confidence 344443 445779999999988775432 2222222111111 22334567899999999753 2233444567888
Q ss_pred HHHHhh---cCCCCeEEEecCCCCccccccccccCCccc-ccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEE
Q 018318 112 AAYTAV---LEPHDRIMGLDLPSGGHLTHGYYTSGGKKI-SATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC 187 (358)
Q Consensus 112 ~~l~a~---~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~ 187 (358)
.++.++ +++||+|+++.++|.+...... .+ ...|. +++.++++++++.+|++++++++++ ++++|++
T Consensus 101 ~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~------~~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 171 (406)
T 3cai_A 101 LLAEASSSRAGLGYEVIVSRLDDEANIAPWL------RAAHRYGA--KVKWAEVDIETGELPTWQWESLISK-STRLVAV 171 (406)
T ss_dssp HHHHHTGGGGBTTCEEEEETTSCGGGTHHHH------HHHHHHBC--EEEEECCCTTTCCCCGGGHHHHCCT-TEEEEEE
T ss_pred HHHHHHhhccCCCCEEEEcCCccHHHHHHHH------HHHHhcCC--eEEEEecCcccCCcCHHHHHHHhCC-CceEEEE
Confidence 888877 7899999999998876532110 00 11354 4445555534678999999999965 7888888
Q ss_pred cCCCC--CCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCee-EEEEeCCCCC
Q 018318 188 GGSAY--PRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRAG-MIFYRKGPKP 262 (358)
Q Consensus 188 ~~~~~--~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~gG-~i~~~~~~~~ 262 (358)
+++++ |...|+++|.++|+++|+++|+|++|+.|... .++. ++|++++|+||++ ||++| +++++++
T Consensus 172 ~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~-----~~~~~~~~d~~~~s~~K~~-g~~~G~~~~~~~~--- 242 (406)
T 3cai_A 172 NSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRL-----LDIRETDADVVTVNAHAWG-GPPIGAMVFRDPS--- 242 (406)
T ss_dssp ESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCC-----CCHHHHCCSEEEEEGGGGT-SCSCEEEEESCHH---
T ss_pred eCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCC-----CCchhcCCCEEEeehhhhc-CCCcCeEEEEehH---
Confidence 77665 46789999999999999999999999866431 2222 6899999999976 56678 8888763
Q ss_pred CCCCCCCCccccHHHHhhhhcC--------CCCcCCCChhHHHHHHHHHHHhccH--------------HHHHHHHHHHH
Q 018318 263 PKKGQPEGAVYDFEDKINFAVF--------PSLQGGPHNHQIGALAVALKQASTP--------------AFKAYAKQVKA 320 (358)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~al~~al~~~~~~--------------~~~~~~~~~~~ 320 (358)
+.+.+..... ....++++...++++.++++.+... .++...++..+
T Consensus 243 ------------~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 310 (406)
T 3cai_A 243 ------------VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNR 310 (406)
T ss_dssp ------------HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHH
Confidence 3333322110 0112445666666666777665421 25677888899
Q ss_pred HHHHHHHHHhhC-CceeeeCC-CcceEEEEEc
Q 018318 321 NAVALGNYLTGK-GYSLVTGG-TENHLVLWDL 350 (358)
Q Consensus 321 ~~~~l~~~L~~~-G~~~~~~~-~~~~~~~v~~ 350 (358)
+++++.+.|++. |+++..+. .....+++.+
T Consensus 311 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 342 (406)
T 3cai_A 311 VFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAV 342 (406)
T ss_dssp HHHHHHHHHHTCTTEEECCCCSSBCSEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEcCCccccCCEEEEEE
Confidence 999999999987 88876532 1233566654
No 38
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.91 E-value=1.3e-22 Score=191.77 Aligned_cols=304 Identities=13% Similarity=0.040 Sum_probs=196.6
Q ss_pred cccccccchHHHHHHHHHHHHhhcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 018318 9 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRA 86 (358)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~l 86 (358)
+++++.++++.+..+.+...+.++.+.+..+.+. .++.|.+++.+.+.... .+|+. .....++++.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~------~~g~~~l~~~la~~~ 76 (389)
T 1gd9_A 4 SDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGL-THYGP------NIGLLELREAIAEKL 76 (389)
T ss_dssp HHHHHHSCCCHHHHHHHHHHTCSSCEECCCCSCSSCCCHHHHHHHHHHHHTTC-CSCCC------TTCCHHHHHHHHHHH
T ss_pred hhHhHhCChhHHHHHHHHHhhhcCeEecCCCCCCCCCCHHHHHHHHHHHhCCC-CCCCC------CCCcHHHHHHHHHHH
Confidence 4556666677666665554433456777766543 47899999887775421 22322 122346665566667
Q ss_pred HHhcCC--CCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCC
Q 018318 87 LQTFHL--DPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS 164 (358)
Q Consensus 87 a~~~g~--~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 164 (358)
++.+|. ++++ ..+++++|++|+..++.+++++||+|++..+.|.++.. .+...|..+..+ +.+.+
T Consensus 77 ~~~~g~~~~~~~--~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g~~~~~v--~~~~~ 143 (389)
T 1gd9_A 77 KKQNGIEADPKT--EIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP---------AVILAGGKPVEV--PTYEE 143 (389)
T ss_dssp HHHHCCCCCTTT--SEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHH---------HHHHHTCEEEEE--ECCGG
T ss_pred HHHhCCCCCCCC--eEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH---------HHHHCCCEEEEe--ccCCc
Confidence 666684 3331 03555667889999999999999999999998876531 233456544444 43322
Q ss_pred -CCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccc-cC--CCC---
Q 018318 165 -TGYIDYDKLEEKALDFRPKLIICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQE-AA--NPF--- 232 (358)
Q Consensus 165 -~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~-~~--~~~--- 232 (358)
++.+|++++++++++ ++++|++++++|| ... ++++|.++|++||+++|+|++|+.+.. .+. .. ..+
T Consensus 144 ~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~ 221 (389)
T 1gd9_A 144 DEFRLNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY-DDARHYSIASLDGM 221 (389)
T ss_dssp GTTCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC-TTCCCCCGGGSTTC
T ss_pred cCCCCCHHHHHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhccc-CCCCCCCHhhccCC
Confidence 357899999999975 6888888777765 343 599999999999999999999875432 221 11 111
Q ss_pred CcccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccH-
Q 018318 233 EYCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP- 309 (358)
Q Consensus 233 ~~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~- 309 (358)
.+.|++++|+||+++ |.+.|++++++ ++.+.+........ .+.+....+++..+++.....
T Consensus 222 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~---------------~~~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~ 285 (389)
T 1gd9_A 222 FERTITVNGFSKTFAMTGWRLGFVAAPS---------------WIIERMVKFQMYNA-TCPVTFIQYAAAKALKDERSWK 285 (389)
T ss_dssp GGGEEEEEESTTTTTCGGGCCEEEECCH---------------HHHHHHHHHHTTTT-CSCCHHHHHHHHHHHTCHHHHH
T ss_pred CCCEEEEecChhhcCCcccceEEEEECH---------------HHHHHHHHHHhhhc-cCCCHHHHHHHHHHHhCCCcch
Confidence 146899999999874 44569999876 45555544322221 223434444444444422111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 310 AFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
.++...+++.++++++.+.|++.|+++.. +..+..+|+++.
T Consensus 286 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~ 326 (389)
T 1gd9_A 286 AVEEMRKEYDRRRKLVWKRLNEMGLPTVK-PKGAFYIFPRIR 326 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCC-CCBTTEECCBCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCeecC-CCeeeEEEEecc
Confidence 34677788899999999999998988765 345666787764
No 39
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.91 E-value=2.6e-23 Score=195.20 Aligned_cols=266 Identities=14% Similarity=0.072 Sum_probs=180.4
Q ss_pred ccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh
Q 018318 38 ASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV 117 (358)
Q Consensus 38 a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~ 117 (358)
++..++++.|.+++.+.+...+ +++...+..+. ....+.+++++++++++|+++++ .+++++|++|+..++.++
T Consensus 7 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~---i~~~~g~~~a~~~~~~~~ 80 (382)
T 4hvk_A 7 TSAKPVDERILEAMLPYMTESF--GNPSSVHSYGF-KAREAVQEAREKVAKLVNGGGGT---VVFTSGATEANNLAIIGY 80 (382)
T ss_dssp TTCCCCCHHHHHHHHHHHHTSC--CCTTCSSHHHH-HHHHHHHHHHHHHHHHTTCTTEE---EEEESSHHHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHHhhc--CCCcccchHHH-HHHHHHHHHHHHHHHHcCCCcCe---EEEECCchHHHHHHHHHh
Confidence 4566789999999998876543 34433222121 22334456779999999997632 244455567999999988
Q ss_pred c----CCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC
Q 018318 118 L----EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP 193 (358)
Q Consensus 118 ~----~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~ 193 (358)
+ +|||+|+++.++|+++.... ..+...|.. ++.++++ +++.+|++++++++++ ++++|++++++++
T Consensus 81 ~~~~~~~gd~vi~~~~~~~~~~~~~------~~~~~~g~~--~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~np 150 (382)
T 4hvk_A 81 AMRNARKGKHILVSAVEHMSVINPA------KFLQKQGFE--VEYIPVG-KYGEVDVSFIDQKLRD-DTILVSVQHANNE 150 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHH------HHHHHTTCE--EEEECBC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTT
T ss_pred hhhhcCCCCEEEECCCCcHHHHHHH------HHHHhcCCE--EEEeccC-CCCCcCHHHHHHHhcc-CceEEEEECCCCC
Confidence 7 99999999999887654211 011123544 4445555 4678999999999975 7888888877655
Q ss_pred --CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCCCCCCCC
Q 018318 194 --RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQP 268 (358)
Q Consensus 194 --~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~~~~~~~ 268 (358)
...|+++|.++|++||+ +|+|++|+.|... .++. ++|++++|+||++ |+.| |+++++++. .+.+.
T Consensus 151 tG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~-----~~~~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~-~~~~~-- 220 (382)
T 4hvk_A 151 IGTIQPVEEISEVLAGKAA-LHIDATASVGQIE-----VDVEKIGADMLTISSNDIY-GPKGVGALWIRKEA-KLQPV-- 220 (382)
T ss_dssp TCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBC-----CCHHHHTCSEEEEESGGGT-SCTTCEEEEEETTC-CCCCS--
T ss_pred ceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCC-----CCchhcCCCEEEEeHHHhc-CCCceEEEEEcCcc-CcCcc--
Confidence 57799999999999999 9999999866431 2222 6899999999975 5665 888887753 11000
Q ss_pred CCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-Cceeee
Q 018318 269 EGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVT 338 (358)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~ 338 (358)
.. .. .... ....++++...++++.+++.... .+++...++..++++++.+.|++. |+++..
T Consensus 221 -~~--~~--~~~~---~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 282 (382)
T 4hvk_A 221 -IL--GG--GQEN---GLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNG 282 (382)
T ss_dssp -SC--SS--CTGG---GTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECS
T ss_pred -cc--cC--CCcC---ccccCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCCCeEEeC
Confidence 00 00 0000 01123455566667667776543 456788899999999999999987 888765
No 40
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.91 E-value=3.2e-23 Score=196.76 Aligned_cols=262 Identities=19% Similarity=0.197 Sum_probs=180.2
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCC-chhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCC
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGG-NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHD 122 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~-~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd 122 (358)
++.|.+++.+.+.. ++.++.+.++..| .+...+ .++++++++|++. .+++++|++|+..++.++++|||
T Consensus 61 ~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~----l~~~la~~~g~~~-----~i~~~sGs~a~~~~~~~~~~~gd 130 (401)
T 1fc4_A 61 HPDLIAAAKAGMDS-HGFGMASVRFICGTQDSHKE----LEQKLAAFLGMED-----AILYSSCFDANGGLFETLLGAED 130 (401)
T ss_dssp CHHHHHHHHHHHHH-HCSCCCSCHHHHCCBHHHHH----HHHHHHHHHTCSE-----EEEESCHHHHHHTTHHHHCCTTC
T ss_pred CHHHHHHHHHHHHH-hCCCCCCCCcccCCcHHHHH----HHHHHHHHhCCCc-----EEEeCChHHHHHHHHHHHcCCCC
Confidence 79999999887643 3323322222211 233334 4588999999873 36778999999999999999999
Q ss_pred eEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhc-----CCcEEEEcCCCCC--Cc
Q 018318 123 RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF-----RPKLIICGGSAYP--RD 195 (358)
Q Consensus 123 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~-----~~~~v~~~~~~~~--~~ 195 (358)
.|++..+.|++.+. .+...|.. ++.++ .+|++++++++++. ++++|++++++++ ..
T Consensus 131 ~v~~~~~~~~~~~~---------~~~~~g~~--~~~~~------~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~ 193 (401)
T 1fc4_A 131 AIISDALNHASIID---------GVRLCKAK--RYRYA------NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVI 193 (401)
T ss_dssp EEEEETTCCHHHHH---------HHHTSCSE--EEEEC------TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEE
T ss_pred EEEEcchhHHHHHH---------HHHHcCCc--eEEEC------CCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCC
Confidence 99999988865431 23345543 44443 36899999998753 6888888876554 56
Q ss_pred cchHHHHHHHHHhCCEEEEechhhhhhhhc-ccc-C--CCCC-cccEEEecCCccCCCCCeeEEEEeCCCCCCCCCCCCC
Q 018318 196 WDYARFRAVADKCGALLLCDMAHISGLVAA-QEA-A--NPFE-YCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEG 270 (358)
Q Consensus 196 ~~l~~i~~la~~~g~~lvvD~a~~~g~~~~-~~~-~--~~~~-~~d~~~~s~~K~l~g~~gG~i~~~~~~~~~~~~~~~~ 270 (358)
.|+++|.++|++||+++|+|++|+.|+.+. +.. . ..+. +.|++++|+||+++|+.||++++++
T Consensus 194 ~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~~~------------ 261 (401)
T 1fc4_A 194 ANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARK------------ 261 (401)
T ss_dssp CCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECH------------
T ss_pred CCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEcCH------------
Confidence 789999999999999999999987776531 210 0 1222 6799999999999666689999876
Q ss_pred ccccHHHHhhhhcCCC-CcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEE
Q 018318 271 AVYDFEDKINFAVFPS-LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWD 349 (358)
Q Consensus 271 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~ 349 (358)
++.+.+.....+. ..++.+....+++.++++.+.. .+...+++.++++++.+.|++.|+++.. ..++.+|++
T Consensus 262 ---~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~ 334 (401)
T 1fc4_A 262 ---EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFTLAG--ADHAIIPVM 334 (401)
T ss_dssp ---HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBCC--SSSSEEEEE
T ss_pred ---HHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccC--CCCCEEEEE
Confidence 4555444322111 1223444555555556655421 3567788899999999999999988763 567778887
Q ss_pred cC
Q 018318 350 LR 351 (358)
Q Consensus 350 ~~ 351 (358)
+.
T Consensus 335 ~~ 336 (401)
T 1fc4_A 335 LG 336 (401)
T ss_dssp EE
T ss_pred cC
Confidence 63
No 41
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.90 E-value=5.9e-23 Score=193.78 Aligned_cols=272 Identities=14% Similarity=0.100 Sum_probs=182.4
Q ss_pred eeEeccCC---CCCHHHHHHHhcccccCCCCCCCCCCCCCC-chhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHH
Q 018318 34 IELIASEN---FTSFAVIEALGSALTNKYSEGMPGNRYYGG-NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPA 109 (358)
Q Consensus 34 ~~l~a~~~---~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~-~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a 109 (358)
+.+..+.+ ..++.+.+++.+.+.. ++.++..+++..+ .+...++ ++++++++|++. .+++++|++|
T Consensus 42 id~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~g~~~-----~i~~~sGt~a 111 (384)
T 1bs0_A 42 LNFSSNDYLGLSHHPQIIRAWQQGAEQ-FGIGSGGSGHVSGYSVVHQAL----EEELAEWLGYSR-----ALLFISGFAA 111 (384)
T ss_dssp EECSCCCTTSGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCCCHHHHHH----HHHHHHHHTCSE-----EEEESCHHHH
T ss_pred EEeeccCccCCCCCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHHH----HHHHHHHhCCCc-----EEEeCCcHHH
Confidence 44444443 3579999999887753 2222332233222 2333344 588999999863 4778899999
Q ss_pred HHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcC--CcEEEE
Q 018318 110 NFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFR--PKLIIC 187 (358)
Q Consensus 110 ~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~--~~~v~~ 187 (358)
+..++.+++++||.|++..+.|++... .+...|.. ++.++ .+|++++++++++.+ +++|++
T Consensus 112 ~~~~~~~~~~~gd~v~~~~~~~~~~~~---------~~~~~g~~--~~~~~------~~d~~~l~~~l~~~~~~~~~v~~ 174 (384)
T 1bs0_A 112 NQAVIAAMMAKEDRIAADRLSHASLLE---------AASLSPSQ--LRRFA------HNDVTHLARLLASPCPGQQMVVT 174 (384)
T ss_dssp HHHHHHHHCCTTCEEEEETTCCHHHHH---------HHHTSSSE--EEEEC------TTCHHHHHHHHHSCCSSCEEEEE
T ss_pred HHHHHHHhCCCCcEEEEcccccHHHHH---------HHHHcCCC--EEEeC------CCCHHHHHHHHHhcCCCCeEEEE
Confidence 999999999999999999988875431 23445653 44443 268999999997642 677777
Q ss_pred cCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhh-ccc-cCCCCC-cccEEEecCCccCCCCCeeEEEEeCCCCC
Q 018318 188 GGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVA-AQE-AANPFE-YCHIVTTTTHKSLRGPRAGMIFYRKGPKP 262 (358)
Q Consensus 188 ~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~-~~~-~~~~~~-~~d~~~~s~~K~l~g~~gG~i~~~~~~~~ 262 (358)
++++|+ ...|+++|.++|++||+++|+|++|+.|... .+. ....++ +.|++++|+||+++ +.||++++++
T Consensus 175 ~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~---- 249 (384)
T 1bs0_A 175 EGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSGAAVLCSS---- 249 (384)
T ss_dssp ESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCCEEEEECH----
T ss_pred eCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh-ccCcEEEeCH----
Confidence 766654 6779999999999999999999999776532 111 011122 57899999999985 7889999976
Q ss_pred CCCCCCCCccccHHHHhhhhcCCCC-cCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCC
Q 018318 263 PKKGQPEGAVYDFEDKINFAVFPSL-QGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGT 341 (358)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~ 341 (358)
++.+.+........ .++++....+++.++++.+.....+...+++.++++++.+.|++.|+++.. .
T Consensus 250 -----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~ 316 (384)
T 1bs0_A 250 -----------TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLAD--S 316 (384)
T ss_dssp -----------HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECS--C
T ss_pred -----------HHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccC--C
Confidence 45444443211111 113444555555566665532134677888999999999999999988763 4
Q ss_pred cceEEEEEc
Q 018318 342 ENHLVLWDL 350 (358)
Q Consensus 342 ~~~~~~v~~ 350 (358)
.++.+|+++
T Consensus 317 ~~~~~~~~~ 325 (384)
T 1bs0_A 317 CSAIQPLIV 325 (384)
T ss_dssp CSSBCCEEE
T ss_pred CCCEEEEEe
Confidence 556677765
No 42
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.90 E-value=6.2e-23 Score=193.06 Aligned_cols=278 Identities=14% Similarity=0.069 Sum_probs=184.0
Q ss_pred ccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh
Q 018318 38 ASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV 117 (358)
Q Consensus 38 a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~ 117 (358)
++.+.+|+.|++++.+.+...+ +++.+.|..+.. .....+..++++++++|++++ ..+++++|++|+..++.++
T Consensus 7 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~~~~---~v~~~~g~t~a~~~~~~~l 80 (382)
T 4eb5_A 7 TSAKPVDERILEAMLPYMTESF--GNPSSVHSYGFK-AREAVQEAREKVAKLVNGGGG---TVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp TTCCCCCHHHHHHHHHHHHTSC--CCTTCSSHHHHH-HHHHHHHHHHHHHHHHTCTTE---EEEEESSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcc--CCCCCCcHHHHH-HHHHHHHHHHHHHHHhCCCCC---eEEEcCchHHHHHHHHHHH
Confidence 4556789999999998876433 333322221111 223334667999999999753 2344556678999999988
Q ss_pred c----CCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC
Q 018318 118 L----EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP 193 (358)
Q Consensus 118 ~----~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~ 193 (358)
. ++||+|+++.++|.++.... ..+...|. .++.++++ +++.+|++++++++++ ++++|++++++|+
T Consensus 81 ~~~~~~~gd~Vl~~~~~~~~~~~~~------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~np 150 (382)
T 4eb5_A 81 AMRNARKGKHILVSAVEHMSVINPA------KFLQKQGF--EVEYIPVG-KYGEVDVSFIDQKLRD-DTILVSVQHANNE 150 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHH------HHHTTTTC--EEEEECBC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTT
T ss_pred HhhccCCCCEEEECCCcchHHHHHH------HHHHhCCc--EEEEeccC-CCCccCHHHHHHHhcC-CCeEEEEeccCCC
Confidence 7 89999999999887653211 01122454 44455555 3678999999999975 6888888776654
Q ss_pred --CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCCCCCCCC
Q 018318 194 --RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQP 268 (358)
Q Consensus 194 --~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~~~~~~~ 268 (358)
...|+++|.++|++||++ |+|++|+.|.. +.++. ++|++++|+||+ .||.| |+++++++. .+.+.
T Consensus 151 tG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~-----~~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~-~l~~~-- 220 (382)
T 4eb5_A 151 IGTIQPVEEISEVLAGKAAL-HIDATASVGQI-----EVDVEKIGADMLTISSNDI-YGPKGVGALWIRKEA-KLQPV-- 220 (382)
T ss_dssp TCBBCCHHHHHHHHTTSSEE-EEECTTTBTTB-----CCCHHHHTCSEEEEETGGG-TCCSSCEEEEEETTC-CCCCS--
T ss_pred ccccCCHHHHHHHHHHCCCE-EEEcchhcCCc-----ccCccccCCCEEEeehHHh-cCCCceEEEEEcccc-ccCce--
Confidence 577999999999999999 99999986532 12232 689999999997 46765 888888752 00000
Q ss_pred CCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-CceeeeCCC--cceE
Q 018318 269 EGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGT--ENHL 345 (358)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~--~~~~ 345 (358)
.. .. .... ....++++...++++.++++.+. ++++...++..++++++.+.|++. |+++..+.. ..+.
T Consensus 221 -~~--~~--~~~~---~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 291 (382)
T 4eb5_A 221 -IL--GG--GQEN---GLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNN 291 (382)
T ss_dssp -SC--SS--CTGG---GTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTE
T ss_pred -ec--CC--Cccc---cccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCE
Confidence 00 00 0000 01123455556666667777654 356788899999999999999987 888764221 1345
Q ss_pred EEEEc
Q 018318 346 VLWDL 350 (358)
Q Consensus 346 ~~v~~ 350 (358)
+++.+
T Consensus 292 ~~~~~ 296 (382)
T 4eb5_A 292 VNVRF 296 (382)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66665
No 43
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.90 E-value=9.6e-23 Score=192.22 Aligned_cols=297 Identities=14% Similarity=0.114 Sum_probs=194.8
Q ss_pred hcccccccchHHHHHHHHHHHHhhcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 018318 8 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSR 85 (358)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~ 85 (358)
.+.+++.++++.+..+.+... ....+.+..+.+. .++.+.+++.+.+.. ...|+.. ....+++ +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~------~~~~~l~----~~ 69 (381)
T 1v2d_A 3 LHPRTEAAKESIFPRMSGLAQ-RLGAVNLGQGFPSNPPPPFLLEAVRRALGR--QDQYAPP------AGLPALR----EA 69 (381)
T ss_dssp CCGGGGGC---CHHHHHHHHH-HHTCEECCCCSCSSCCCHHHHHHHHHHTTT--SCSCCCT------TCCHHHH----HH
T ss_pred hhhhhhhcCccHHHHHHHHHh-cCCeEEecCCCCCCCCCHHHHHHHHHHHHH--hcCCCCC------CCCHHHH----HH
Confidence 356777777777666655433 2456777766443 478999999887653 1223221 1223454 77
Q ss_pred HHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccC--C
Q 018318 86 ALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN--S 163 (358)
Q Consensus 86 la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~ 163 (358)
+++++++++++ .+++++|++|+..++.+++++||+|++..+.|.++.. .++..|..+..+ +.+ .
T Consensus 70 la~~~~~~~~~---v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~---------~~~~~g~~~~~v--~~~~~~ 135 (381)
T 1v2d_A 70 LAEEFAVEPES---VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLP---------DAFLAGAKARLV--RLDLTP 135 (381)
T ss_dssp HHHHHTSCGGG---EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTCEEEEE--ECEEET
T ss_pred HHHhcCCChhh---EEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH---------HHHHcCCEEEEE--eCCCCC
Confidence 88889987642 3445556789999999999999999999998876531 234456544444 433 2
Q ss_pred CCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC----Cc
Q 018318 164 STGYIDYDKLEEKALDFRPKLIICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF----EY 234 (358)
Q Consensus 164 ~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~----~~ 234 (358)
+++.+|++++++++++ ++++|++++++|+ ... ++++|.++|++||+++|+|++|+.+.. +....++ .+
T Consensus 136 ~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~--g~~~~~~~~~~~~ 212 (381)
T 1v2d_A 136 EGFRLDLSALEKALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY--GERPRRLREFAPE 212 (381)
T ss_dssp TEEECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS--SSCCCCHHHHCTT
T ss_pred ccCCcCHHHHHHhcCc-CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc--CCCCCCHHHhcCC
Confidence 3567999999998864 6888888777665 343 489999999999999999999864322 1111111 26
Q ss_pred ccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhc-cHHH
Q 018318 235 CHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAS-TPAF 311 (358)
Q Consensus 235 ~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-~~~~ 311 (358)
.|++++|+||+++ |.+.|+++++++ +.+.+....... ..+++....+++.++++... ...+
T Consensus 213 ~~~~~~s~sK~~~~~G~r~G~~~~~~~---------------~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~ 276 (381)
T 1v2d_A 213 RTFTVGSAGKRLEATGYRVGWIVGPKE---------------FMPRLAGMRQWT-SFSAPTPLQAGVAEALKLARREGFY 276 (381)
T ss_dssp TEEEEEEHHHHTTCGGGCCEEEECCTT---------------THHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHTTHH
T ss_pred CEEEEeechhhcCCcccceEEEEeCHH---------------HHHHHHHHHhhc-ccCCCcHHHHHHHHHHhCcccHHHH
Confidence 7899999999874 455799999774 333333211100 11234444455556665431 2345
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 312 KAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 312 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
+...+++.++++++.+.|++.|+++.. +..++.+|+++.
T Consensus 277 ~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~ 315 (381)
T 1v2d_A 277 EALREGYRRRRDLLAGGLRAMGLRVYV-PEGTYFLMAELP 315 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEC-CSBSSEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEecC-CCcceEEEEecC
Confidence 778888999999999999999998875 345667888864
No 44
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.90 E-value=7.6e-23 Score=193.17 Aligned_cols=284 Identities=13% Similarity=0.131 Sum_probs=188.0
Q ss_pred hcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC--CCCCCCCccccccCC
Q 018318 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH--LDPTQWGVNVQPYSG 106 (358)
Q Consensus 31 ~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g--~~~~~~~~~v~~~sG 106 (358)
.+.+.+..+++. .+|.|.+++.+.+.... .+|+. + ..++++.+++++++++| ++.+ ..+++++|
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~-----~---~~~~~~~l~~~l~~~~g~~~~~~---~v~~~~g~ 99 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEI-YGYTT-----R---PDSYNESIVNWLYRRHNWKIKSE---WLIYSPGV 99 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCC-CCCBC-----C---CHHHHHHHHHHHHHHHCCCCCGG---GEEEESCH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCC-CCCCC-----C---CHHHHHHHHHHHHHHhCCCCcHH---HeEEcCCh
Confidence 345677666543 47999999988775421 12221 1 13555667789999999 5443 22444555
Q ss_pred hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecc-cCCCCCCCCHHHHHHHHhhcCCcEE
Q 018318 107 SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK-VNSSTGYIDYDKLEEKALDFRPKLI 185 (358)
Q Consensus 107 t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~id~~~l~~~l~~~~~~~v 185 (358)
++|+..++.+++++||+|++..+.|.++.. .+...|..+..++++ .+..++.+|++++++++++ +++|
T Consensus 100 ~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v 168 (391)
T 4dq6_A 100 IPAISLLINELTKANDKIMIQEPVYSPFNS---------VVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLF 168 (391)
T ss_dssp HHHHHHHHHHHSCTTCEEEECSSCCTHHHH---------HHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCHHHHH---------HHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEE
Confidence 679999999999999999999998876431 234456544434332 1122356999999999975 8888
Q ss_pred EEcCCCCC--Cc---cchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--c-----ccEEEecCCccC--CCCCe
Q 018318 186 ICGGSAYP--RD---WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--Y-----CHIVTTTTHKSL--RGPRA 251 (358)
Q Consensus 186 ~~~~~~~~--~~---~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~-----~d~~~~s~~K~l--~g~~g 251 (358)
++++++|+ .. .++++|.++|++||+++|+|++|+. +...+....++. . ..++++|+||++ +|.+.
T Consensus 169 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~ 247 (391)
T 4dq6_A 169 ILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSD-IILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQS 247 (391)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCC
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccc-cccCCCCccCHHHcCccccCcEEEEEechhhccCcccce
Confidence 88777765 33 4689999999999999999999864 333222222222 1 228899999987 45567
Q ss_pred eEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 018318 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (358)
Q Consensus 252 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 331 (358)
|+++++++ ++.+.+.........++++....+++.+++... ...++...++..++++++.+.|++
T Consensus 248 G~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~ 312 (391)
T 4dq6_A 248 SYVVLPDE--------------KDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG-ESWLESFLEYLESNIDFAIKYINE 312 (391)
T ss_dssp EEEECCSH--------------HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCH--------------HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998773 355544433212222344555555555566542 223577788899999999999988
Q ss_pred C--CceeeeCCCcceEEEEEcCCCC
Q 018318 332 K--GYSLVTGGTENHLVLWDLRPLG 354 (358)
Q Consensus 332 ~--G~~~~~~~~~~~~~~v~~~~~~ 354 (358)
. |+++.. +..+..+|+++...+
T Consensus 313 ~~~~~~~~~-~~~~~~~~~~~~~~~ 336 (391)
T 4dq6_A 313 NMPKLKVRK-PEGTYLLWVDFSALG 336 (391)
T ss_dssp HCTTSEECC-CSBSSEEEEECGGGC
T ss_pred hCCCCEecC-CCccEEEEEEhhhcC
Confidence 4 898875 456777889876433
No 45
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.90 E-value=1.7e-23 Score=198.16 Aligned_cols=264 Identities=14% Similarity=0.101 Sum_probs=172.2
Q ss_pred cceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHH
Q 018318 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (358)
Q Consensus 32 ~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~ 111 (358)
+.+.+..+...+++++.+++.+.+...+ +. ...+...+++ +.+++++|.+. .+++++|++|+.
T Consensus 23 ~~~~l~~~~p~~~~~~~~a~~~~~~~~~---~~-----~~~~~~~~l~----~~la~~~~~~~-----~i~~~~gt~al~ 85 (391)
T 3dr4_A 23 DLPRISVAAPRLDGNERDYVLECMDTTW---IS-----SVGRFIVEFE----KAFADYCGVKH-----AIACNNGTTALH 85 (391)
T ss_dssp -----CCCCCCCCSSHHHHHHHHHHHTC---CS-----SCSHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHH
T ss_pred CCceeccCCCCCCHHHHHHHHHHHHcCC---cc-----CCChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHH
Confidence 3445555666778899999887765432 11 1124455555 78999999874 367788999999
Q ss_pred HHHHhh-cCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCC
Q 018318 112 AAYTAV-LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGS 190 (358)
Q Consensus 112 ~~l~a~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~ 190 (358)
.++.++ +++||+|+++.++|.++.. .+...|. +++.++++.+++.+|++++++++++ ++++|++++
T Consensus 86 ~~l~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~n- 152 (391)
T 3dr4_A 86 LALVAMGIGPGDEVIVPSLTYIASAN---------SVTYCGA--TPVLVDNDPRTFNLDAAKLEALITP-RTKAIMPVH- 152 (391)
T ss_dssp HHHHHHTCCTTCEEEEESSSCTHHHH---------HHHHTTC--EEEEECBCTTTCSBCGGGSGGGCCT-TEEEECCBC-
T ss_pred HHHHHcCCCCcCEEEECCCchHHHHH---------HHHHCCC--EEEEEecCccccCcCHHHHHHhcCC-CceEEEEEC-
Confidence 999999 9999999999998876531 2334565 4455555545678999999998864 678777543
Q ss_pred CCCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCCeeEEEEeCCCCCCCCCCCCC
Q 018318 191 AYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEG 270 (358)
Q Consensus 191 ~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~gG~i~~~~~~~~~~~~~~~~ 270 (358)
.+|...|+++|.++|++||+++|+|++|+.|....+.....+.++++.++|.||+++|++||+++++++
T Consensus 153 ~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~g~gg~~~~~~~----------- 221 (391)
T 3dr4_A 153 LYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITTGEGGMITTNDD----------- 221 (391)
T ss_dssp GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCCBSCEEEEESCH-----------
T ss_pred CCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCcCCeEEEEECCH-----------
Confidence 356678999999999999999999999988765433211111123344444779998888899888774
Q ss_pred ccccHHHHhhhhcCCCCc-------C-CCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeC
Q 018318 271 AVYDFEDKINFAVFPSLQ-------G-GPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTG 339 (358)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~ 339 (358)
++.+.+......+.. . ......+..+.+++.......++.+.++.+++++++++.|.+.|+++...
T Consensus 222 ---~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 295 (391)
T 3dr4_A 222 ---DLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKP 295 (391)
T ss_dssp ---HHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGTTSEECC
T ss_pred ---HHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCc
Confidence 344433321111100 0 00001112222333222223456778889999999999999888887653
No 46
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.90 E-value=2.2e-22 Score=190.13 Aligned_cols=303 Identities=13% Similarity=0.107 Sum_probs=200.1
Q ss_pred hcccccccchHHHHHHHHHHHHhhcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 018318 8 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSR 85 (358)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~ 85 (358)
++.++..+++..+..+.+... ..+.+.+..+... .++.|.+++.+.+... ..+|+.. ....++++.+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~ 79 (386)
T 1u08_A 8 PQSKLPQLGTTIFTQMSALAQ-QHQAINLSQGFPDFDGPRYLQERLAHHVAQG-ANQYAPM------TGVQALREAIAQK 79 (386)
T ss_dssp CCCSCCCCCCCHHHHHHHHHH-HTTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHH
T ss_pred cchhhhcCCccHHHHHHHHHh-cCCeEEecCCCCCCCCCHHHHHHHHHHHHhh-ccCCCCC------CCCHHHHHHHHHH
Confidence 467788888887776655433 3456777765432 5799999998877531 1223221 1234666666677
Q ss_pred HHHhcCCC--CC-CCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccC
Q 018318 86 ALQTFHLD--PT-QWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (358)
Q Consensus 86 la~~~g~~--~~-~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (358)
+++.+|.+ ++ + .+++++|++|+..++.+++++||+|++..+.|.++.. .++..|..+ +.++.+
T Consensus 80 l~~~~g~~~~~~~~---v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g~~~--~~v~~~ 145 (386)
T 1u08_A 80 TERLYGYQPDADSD---ITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAP---------AIALSGGIV--KRMALQ 145 (386)
T ss_dssp HHHHHSCCCCTTTT---EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTCEE--EEEECC
T ss_pred HHHHhCCCCCCCCC---EEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHH---------HHHHcCCEE--EEeecC
Confidence 77777854 32 2 2444455679999999999999999999998876431 234456544 444444
Q ss_pred CCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccccCCC---C--
Q 018318 163 SSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAANP---F-- 232 (358)
Q Consensus 163 ~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~---~-- 232 (358)
.+++.+|++++++++.+ ++++|++++++|+ ... ++++|.++|++||+++|+|++|+.. .+.+....+ +
T Consensus 146 ~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~ 223 (386)
T 1u08_A 146 PPHFRVDWQEFAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHI-NFSQQGHASVLAHPQ 223 (386)
T ss_dssp TTTCCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTC-BCCSSCCCCGGGSHH
T ss_pred cccCcCCHHHHHHhhcc-cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEcccccc-ccCCCCCcChhcccC
Confidence 33568999999999864 7888888777665 344 4789999999999999999998642 222211111 2
Q ss_pred C-cccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccH
Q 018318 233 E-YCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP 309 (358)
Q Consensus 233 ~-~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~ 309 (358)
. +.|++++|+||+++ |.+.|++++++ ++.+.+........ .+.+....+++..+++.. ..
T Consensus 224 ~~~~~i~~~s~sK~~~~~G~r~G~~~~~~---------------~~~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~-~~ 286 (386)
T 1u08_A 224 LRERAVAVSSFGKTYHMTGWKVGYCVAPA---------------PISAEIRKVHQYLT-FSVNTPAQLALADMLRAE-PE 286 (386)
T ss_dssp HHTTEEEEEEHHHHTTCGGGCCEEEECCH---------------HHHHHHHHHHHHHT-SSCCHHHHHHHHHHHHHC-TH
T ss_pred ccCcEEEEecchhhcCCcccceEEEEcCH---------------HHHHHHHHHHHhhc-cCCChHHHHHHHHHHhCC-cH
Confidence 1 57899999999974 44569999876 45454443211111 122333444555566543 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcCC
Q 018318 310 AFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 310 ~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~~ 352 (358)
.++...+++.++++++.+.|++.|+++.. +..++.+|+++..
T Consensus 287 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~ 328 (386)
T 1u08_A 287 HYLALPDFYRQKRDILVNALNESRLEILP-CEGTYFLLVDYSA 328 (386)
T ss_dssp HHHTHHHHHHHHHHHHHHHTTSSSCEECC-CCBSSEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCeecC-CCceEEEEEecCC
Confidence 45777888999999999999999998765 4456789998754
No 47
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.90 E-value=2.7e-22 Score=191.08 Aligned_cols=260 Identities=15% Similarity=0.142 Sum_probs=177.8
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCC-chhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCC
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGG-NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHD 122 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~-~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd 122 (358)
+|.|.+++.+.+. +++.++.+.....| .+...+++ +++++++|.+. .+++++|++|+..++.++++|||
T Consensus 75 ~p~v~~a~~~~l~-~~~~~~~~~~~~~g~~~~~~~l~----~~la~~~g~~~-----~i~~~sGt~a~~~~l~~~~~~gd 144 (409)
T 3kki_A 75 HPLIKARLAKSLL-EEQQSLFMSASFLQNDYDKPMIE----KRLAKFTGFDE-----CLLSQSGWNANVGLLQTICQPNT 144 (409)
T ss_dssp CHHHHHHHHHHHH-SCCCCCCSBGGGGCSTTTSCHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTTC
T ss_pred CHHHHHHHHHHHH-HcCCCCCccccccCCcHHHHHHH----HHHHHHhCCCe-----EEEecchHHHHHHHHHHhcCCCC
Confidence 7999999988775 34333322222222 23344554 78999999875 36678999999999999999999
Q ss_pred eEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCC--CCccchHH
Q 018318 123 RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAY--PRDWDYAR 200 (358)
Q Consensus 123 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~--~~~~~l~~ 200 (358)
.|++..+.|+++.. .+...|. .+++++ .+|+++++++++++++++|+++.+++ |...|+++
T Consensus 145 ~Vl~~~~~~~~~~~---------~~~~~g~--~~~~~~------~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~ 207 (409)
T 3kki_A 145 NVYIDFFAHMSLWE---------GARYANA--QAHPFM------HNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAE 207 (409)
T ss_dssp EEEEETTSCHHHHH---------HHHHTTC--EEEEEC------TTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHH
T ss_pred EEEECCCcCHHHHH---------HHHHcCC--eEEEec------CCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHH
Confidence 99999988876431 2334554 344442 37899999999876789998887765 46788999
Q ss_pred HHHHHHHhCCEEEEechhhhhhhhccccC----CCCC-cccEEEecCCccCCCCCeeEEEEeCCCCCCCCCCCCCccccH
Q 018318 201 FRAVADKCGALLLCDMAHISGLVAAQEAA----NPFE-YCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDF 275 (358)
Q Consensus 201 i~~la~~~g~~lvvD~a~~~g~~~~~~~~----~~~~-~~d~~~~s~~K~l~g~~gG~i~~~~~~~~~~~~~~~~~~~~~ 275 (358)
|.++|++||+++|+|++|+.|........ ..+. ++|+++.|++|+++++ ||+++++++ +
T Consensus 208 l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~-gg~v~~~~~---------------~ 271 (409)
T 3kki_A 208 LVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR-AGAIWCNNE---------------V 271 (409)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS-CEEEEESSS---------------G
T ss_pred HHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC-ceEEEECHH---------------H
Confidence 99999999999999999976543221100 1122 5789999999998654 899998875 2
Q ss_pred HHHhhhhcCCC-CcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 276 EDKINFAVFPS-LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 276 ~~~~~~~~~~~-~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
.+.+.....+. ..++.+...++++.++++... +.+...+++.++++++.+.|++.|+++. ..++.+|+.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~---~~~~~~~~~~~ 343 (409)
T 3kki_A 272 NRCVPFISYPAIFSSTLLPYEAAGLETTLEIIE--SADNRRQHLDRMARKLRIGLSQLGLTIR---SESQIIGLETG 343 (409)
T ss_dssp GGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHTTTCCCC---CSSSEEEEEEE
T ss_pred HHHHHHhCcCccccCCCcHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCccC---CCCCEEEEEeC
Confidence 22222111111 112234445555556666543 2356778889999999999999998875 35667777653
No 48
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.90 E-value=2.3e-23 Score=196.65 Aligned_cols=244 Identities=11% Similarity=0.070 Sum_probs=163.0
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHH-HHhcC-CCCCCCCccccccCChHHHHHHHHhh-cC
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRA-LQTFH-LDPTQWGVNVQPYSGSPANFAAYTAV-LE 119 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~l-a~~~g-~~~~~~~~~v~~~sGt~a~~~~l~a~-~~ 119 (358)
.++.+++++.+.+.+.+ + ....+...++| +.+ ++++| .+. .++++||+.|+..++.++ ++
T Consensus 14 ~~~~i~~a~~~~~~~~~---~-----~~~~~~~~~l~----~~~~a~~~g~~~~-----~v~~~sgt~al~~al~~l~~~ 76 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHI---Y-----TNYGPINQRFE----QTIMSGFFQNRGA-----VTTVANATLGLMAAIQLKKRK 76 (377)
T ss_dssp CGGGGHHHHHHHHHHTC---C-----SSSCHHHHHHH----HHHHHHTSTTCSE-----EEEESCHHHHHHHHHHHHSCT
T ss_pred CcHHHHHHHHHHHHcCC---c-----ccCCHHHHHHH----HHHHHHHhCCCCe-----EEEeCCHHHHHHHHHHHcCCC
Confidence 36777888877765432 1 11124556676 678 99999 443 477889999999999998 89
Q ss_pred CCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcC--CcEEEEcCCCCCCccc
Q 018318 120 PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFR--PKLIICGGSAYPRDWD 197 (358)
Q Consensus 120 ~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~--~~~v~~~~~~~~~~~~ 197 (358)
|||+|+++.++|.+... .+...|. ++++++++.+++.+|++++++++.+.+ +++|+..+ .+|.+.|
T Consensus 77 ~Gd~Vi~~~~~~~~~~~---------~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~~-~~G~~~~ 144 (377)
T 3ju7_A 77 KGKYALMPSFTFPATPL---------AAIWCGL--EPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPYA-TFGSWMN 144 (377)
T ss_dssp TCCEEEEESSSCTHHHH---------HHHHTTC--EEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCBC-GGGBCCC
T ss_pred CcCEEEECCCCcHHHHH---------HHHHcCC--EEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEEC-CCCCccC
Confidence 99999999998876431 2344565 455556554578999999999984335 88777443 3567789
Q ss_pred hHHHHHHHHHhCCEEEEechhhhhhhhccccC-CCCCcccEEEecCCccCCCCCeeEEEEeCCCCCCCCCCCCCccccHH
Q 018318 198 YARFRAVADKCGALLLCDMAHISGLVAAQEAA-NPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFE 276 (358)
Q Consensus 198 l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~-~~~~~~d~~~~s~~K~l~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~ 276 (358)
+++|.++|+ ||+++|+|++|+.|....+... ..+.++++.+++.||+++++.||+++++++ ++.
T Consensus 145 ~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~--------------~l~ 209 (377)
T 3ju7_A 145 LEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNE--------------EDI 209 (377)
T ss_dssp CHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCH--------------HHH
T ss_pred HHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCH--------------HHH
Confidence 999999999 9999999999998865432211 111234445556789998778899988775 455
Q ss_pred HHhhhhcCCCC--------cC-CCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCC
Q 018318 277 DKINFAVFPSL--------QG-GPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKG 333 (358)
Q Consensus 277 ~~~~~~~~~~~--------~~-~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G 333 (358)
++++.....+. .+ +.....+.+ +.++..+ +.++.+.++.+++++++.+.|++.+
T Consensus 210 ~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~a-a~~~~~l--~~l~~~~~~~~~~~~~~~~~L~~~~ 272 (377)
T 3ju7_A 210 QRIKRMGNFGFDTNRECTMMGFNCKMSEYAA-AIGIATM--KKWDDKLKERTRISEWYKQLLQSNG 272 (377)
T ss_dssp HHHHHHTBTTBCTTSCBCSSCCBCCCCHHHH-HHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCceeeccccCCCCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 54443222111 01 111111211 1222222 3467788889999999999999874
No 49
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.90 E-value=4e-22 Score=192.56 Aligned_cols=278 Identities=12% Similarity=0.050 Sum_probs=183.0
Q ss_pred CCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCC--CCccccccCChHHHHHHHHhhc
Q 018318 41 NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQ--WGVNVQPYSGSPANFAAYTAVL 118 (358)
Q Consensus 41 ~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~--~~~~v~~~sGt~a~~~~l~a~~ 118 (358)
++.++.+.+++...+..... . +...+...++|+++++++++++|++.++ .+..+++++||+|+..++.++.
T Consensus 52 ~~~~~~v~e~~~~a~~~~~~-~------~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~ 124 (452)
T 2dgk_A 52 TWDDENVHKLMDLSINKNWI-D------KEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMK 124 (452)
T ss_dssp CCCCHHHHHHHHHTTTCBTT-C------TTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccCCC-C------hhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHH
Confidence 45678999998876643211 1 1123556688889999999999998642 1013556677889999888775
Q ss_pred C--------CC-----CeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEE
Q 018318 119 E--------PH-----DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185 (358)
Q Consensus 119 ~--------~g-----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v 185 (358)
. +| ++|+++. .|.++. +.+...|+. ++.++++.+++.+|+++|++++++ +|++|
T Consensus 125 ~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~---------~~~~~~G~~--v~~v~~~~~~~~~d~~~l~~~i~~-~t~~v 191 (452)
T 2dgk_A 125 WRWRKRMEAAGKPTDKPNLVCGP-VQICWH---------KFARYWDVE--LREIPMRPGQLFMDPKRMIEACDE-NTIGV 191 (452)
T ss_dssp HHHHHHHHHTTCCCSCCEEEESS-CCHHHH---------HHHHHTTCE--EEECCCBTTBCSCCHHHHHHHCCT-TEEEE
T ss_pred HHHHHHHHhcCCCCCCcEEEECC-CcHHHH---------HHHHHcCce--EEEEecCCCCCeECHHHHHHHHhh-CCEEE
Confidence 3 55 5888877 664332 123456664 444555433689999999999975 67888
Q ss_pred EEcCCCC--CCccchHHHHHHHHHh------CCEEEEechhhhhhh--hccccCCCC--CcccEEEecCCccCCCC-Cee
Q 018318 186 ICGGSAY--PRDWDYARFRAVADKC------GALLLCDMAHISGLV--AAQEAANPF--EYCHIVTTTTHKSLRGP-RAG 252 (358)
Q Consensus 186 ~~~~~~~--~~~~~l~~i~~la~~~------g~~lvvD~a~~~g~~--~~~~~~~~~--~~~d~~~~s~~K~l~g~-~gG 252 (358)
+++.++| |...|+++|+++|++| |+++++|+||+.+.. ..+.....+ .++|++++++||++.+| ++|
T Consensus 192 ~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G 271 (452)
T 2dgk_A 192 VPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCG 271 (452)
T ss_dssp ECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCE
T ss_pred EEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeE
Confidence 7776654 4678999999999996 999999999876543 122222222 38999999999987555 559
Q ss_pred EEEEeCCCCCCCCCCCCCccccHHHHhhhh--c------CCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 018318 253 MIFYRKGPKPPKKGQPEGAVYDFEDKINFA--V------FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVA 324 (358)
Q Consensus 253 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~ 324 (358)
+++++++. .+.+.+... . .....++......++++++++.+..+++++++++..+++++
T Consensus 272 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~ 338 (452)
T 2dgk_A 272 WVIWRDEE-------------ALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAY 338 (452)
T ss_dssp EEEESSGG-------------GSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCHH-------------HHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99997631 000111100 0 00112233333445566677665555678889999999999
Q ss_pred HHHHHhhC-CceeeeCC---CcceEEEEEcC
Q 018318 325 LGNYLTGK-GYSLVTGG---TENHLVLWDLR 351 (358)
Q Consensus 325 l~~~L~~~-G~~~~~~~---~~~~~~~v~~~ 351 (358)
+.+.|++. |+++..+. ...+++.+.+.
T Consensus 339 l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~ 369 (452)
T 2dgk_A 339 LADEIAKLGPYEFICTGRPDEGIPAVCFKLK 369 (452)
T ss_dssp HHHHHHTTSSEEEEEECCTTTBSSEEEEEEC
T ss_pred HHHHHHhCCCeEEecCCCCCCCeEEEEEEec
Confidence 99999998 59887531 34455665554
No 50
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.90 E-value=8.5e-23 Score=195.71 Aligned_cols=260 Identities=15% Similarity=0.156 Sum_probs=167.7
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCe
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDR 123 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~ 123 (358)
.+.|++++.+........+ ....+..+...++.+| +++++++|++... ..+.++||++|+..++.++++|||+
T Consensus 37 ~~~vl~A~~~~~~~~~~~~-~~~g~~y~~~~~~~l~----~~la~~~g~~~~~--~~i~~~sGt~Ai~~al~al~~~Gd~ 109 (431)
T 3ht4_A 37 QFRVLESFGKHKISDSHFI-PTTGYGYDDIGRDTLE----KVYADVFGAEAGL--VRPQIISGTHAISTALFGILRPGDE 109 (431)
T ss_dssp HHHHHHHHHHTTCCGGGSC-CCCTTCCSCHHHHHHH----HHHHHHTTCSEEC--CBTTSCSHHHHHHHHHHTTCCTTCE
T ss_pred HHHHHHHHHHhchhhhhcC-CCCCCCCChhhHHHHH----HHHHHHhCCCccc--ccceeeCHHHHHHHHHHHhCCCCCE
Confidence 4688888876532211101 1111222334455565 8899999998631 1234679999999999999999999
Q ss_pred EEEec-CCCCcccccccccc-CCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcC-CCCC-----Cc
Q 018318 124 IMGLD-LPSGGHLTHGYYTS-GGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGG-SAYP-----RD 195 (358)
Q Consensus 124 Vl~~~-~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~-~~~~-----~~ 195 (358)
|++.. +.|++.......+. .-..+...|. +++.++.+ +++.+|++++++++++ ++++|+++. ++|+ ..
T Consensus 110 Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~--~~~~v~~~-~~~~~d~e~l~~~l~~-~tk~V~i~~sp~np~~~~~~~ 185 (431)
T 3ht4_A 110 LLYITGKPYDTLEEIVGVRGKGVGSFKEYNI--GYNAVPLT-EGGLVDFEAVAAAIHS-NTKMIGIQRSKGYATRPSFTI 185 (431)
T ss_dssp EEECSSSCCTTHHHHTTSSSCSSSCSGGGTC--EEEECCBC-TTSSBCHHHHHHHCCT-TEEEEEEECSCTTSSSCCCCH
T ss_pred EEEeCCCCchhHHHHHhhcccccchHHHcCC--EEEEeCCC-CCCCcCHHHHHhhcCC-CCeEEEEECCCCCCCCCcCCH
Confidence 99988 87776432110000 0001223454 45555555 3578999999999975 789998875 4333 35
Q ss_pred cchHHHHHHHHH--hCCEEEEechhhhhhhhccccCCCCC-cccEEEecCCccCCC---CCeeEEEEeCCCCCCCCCCCC
Q 018318 196 WDYARFRAVADK--CGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTHKSLRG---PRAGMIFYRKGPKPPKKGQPE 269 (358)
Q Consensus 196 ~~l~~i~~la~~--~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~~~s~~K~l~g---~~gG~i~~~~~~~~~~~~~~~ 269 (358)
.++++|.++|++ +|+++++|++|+.+.... .+.. ++|++++|++|+++| +.||++++++
T Consensus 186 ~~l~~i~~la~~~~~~~~livDea~~~~~~~~----~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~----------- 250 (431)
T 3ht4_A 186 SQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQ----EPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKE----------- 250 (431)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECTTCTTSSSC----CGGGTTCSEEEEETTSGGGTTTCSSCEEEEECH-----------
T ss_pred HHHHHHHHHHHhhCCCCEEEEeCCChhhccCC----CccccCCeEEEcCccccCCCCCCCceEEEEecH-----------
Confidence 689999999999 999999999987654211 2233 789999999999865 7889999977
Q ss_pred CccccHHHHhhhhc-CCCCc--CCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeee
Q 018318 270 GAVYDFEDKINFAV-FPSLQ--GGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 338 (358)
Q Consensus 270 ~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~ 338 (358)
++.+.+.... .++.. .++.......+..++. ....++++..++++++++.|++.|+++++
T Consensus 251 ----~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~a~~l~~~L~~~g~~v~p 313 (431)
T 3ht4_A 251 ----QYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFF-----LAPHVAGQALKGAIFTAAFLEKLGMNTSP 313 (431)
T ss_dssp ----HHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTCCEES
T ss_pred ----HHHHHHHHHhccCCcccccCccHHHHHHHHhHhh-----hHHHHHHHHHHHHHHHHHHHHhCcCEecC
Confidence 4555554322 12111 1121111111112222 23567888999999999999999998864
No 51
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.90 E-value=1.8e-22 Score=192.33 Aligned_cols=282 Identities=13% Similarity=0.059 Sum_probs=183.5
Q ss_pred ceeEecc-CCCCCHHHHHHHhcccccCCCCCCCCC-CCCCCchhHHHHHHHHHHHHHHhcCC-CCCCCCccccccCChHH
Q 018318 33 GIELIAS-ENFTSFAVIEALGSALTNKYSEGMPGN-RYYGGNEFIDEIENLCRSRALQTFHL-DPTQWGVNVQPYSGSPA 109 (358)
Q Consensus 33 ~~~l~a~-~~~~~~~V~~a~~~~~~~~~~~g~~~~-~~~~~~~~~~~le~~~~~~la~~~g~-~~~~~~~~v~~~sGt~a 109 (358)
.+.|..+ ++.+|+.|.+++.+.+.... +++.. .+..+......+ ...++++++++|. +++ ..+++++|++|
T Consensus 29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~y~~~~~~~~-~~l~~~la~~~~~~~~~---~v~~~~g~t~a 102 (420)
T 1t3i_A 29 LVYLDNAATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLSVRATDAY-EAVRNKVAKFINARSPR---EIVYTRNATEA 102 (420)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHHHHHHHHH-HHHHHHHHHHTTCSCGG---GEEEESSHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhcc--CCCCcccchHHHHHHHHH-HHHHHHHHHHcCCCCCC---eEEEcCChHHH
Confidence 4555543 34668999999988775432 12211 111111111222 3466899999998 433 23555666789
Q ss_pred HHHHHHhh----cCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEE
Q 018318 110 NFAAYTAV----LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185 (358)
Q Consensus 110 ~~~~l~a~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v 185 (358)
+..++.++ +++||+|+++.+.|.+...... ..+...|.. ++.++.+ +++.+|++++++++++ ++++|
T Consensus 103 ~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~~g~~--~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v 173 (420)
T 1t3i_A 103 INLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQ-----MVAAKTGAV--LKFVQLD-EQESFDLEHFKTLLSE-KTKLV 173 (420)
T ss_dssp HHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHH-----HHHHHHCCE--EEEECBC-TTSSBCHHHHHHHCCT-TEEEE
T ss_pred HHHHHHHhhhcccCCCCEEEECcchhHHHHHHHH-----HHHHhcCcE--EEEeccC-CCCCcCHHHHHHhhCC-CceEE
Confidence 99999999 8999999999998876421000 011234544 4445544 3678999999999975 78888
Q ss_pred EEcCCCC--CCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCC
Q 018318 186 ICGGSAY--PRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGP 260 (358)
Q Consensus 186 ~~~~~~~--~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~ 260 (358)
+++++++ |...|+++|.++|++||+++|+|++|+.|... ..+. ++|++++|+||.+ |+.| |+++++++
T Consensus 174 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-----~~~~~~~~di~~~s~sK~~-~~~g~G~~~~~~~- 246 (420)
T 1t3i_A 174 TVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYP-----LDVQLIDCDWLVASGHKMC-APTGIGFLYGKEE- 246 (420)
T ss_dssp EEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSC-----CCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHH-
T ss_pred EEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCcc-----CchhhcCCCEEEEehhhhc-CCCceEEEEEchH-
Confidence 8887765 46778999999999999999999999876431 1222 6899999999955 5555 89888763
Q ss_pred CCCCCCCCCCccccHHHHhhhhcCC--------------------CCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 018318 261 KPPKKGQPEGAVYDFEDKINFAVFP--------------------SLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKA 320 (358)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~ 320 (358)
+.+.+...... ...+++.....+++..+++.+...+++...++..+
T Consensus 247 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 312 (420)
T 1t3i_A 247 --------------ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVE 312 (420)
T ss_dssp --------------HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred --------------HHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333221110 11234455555555556666543235778888999
Q ss_pred HHHHHHHHHhhC-CceeeeCC----CcceEEEEEc
Q 018318 321 NAVALGNYLTGK-GYSLVTGG----TENHLVLWDL 350 (358)
Q Consensus 321 ~~~~l~~~L~~~-G~~~~~~~----~~~~~~~v~~ 350 (358)
+++++.+.|++. |+++..+. ..+..+++.+
T Consensus 313 ~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~ 347 (420)
T 1t3i_A 313 LTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNV 347 (420)
T ss_dssp HHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEE
T ss_pred HHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEE
Confidence 999999999997 89887532 1245556554
No 52
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.90 E-value=3.2e-22 Score=190.71 Aligned_cols=304 Identities=14% Similarity=0.090 Sum_probs=197.7
Q ss_pred cccccccchHHHHHHHHHHHHhhcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 018318 9 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRA 86 (358)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~l 86 (358)
+++++.+++..+..+.+... ....+.|..+.+. .++.+.+++.+.+... ..+|+.. ....++++.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~~ 75 (411)
T 2o0r_A 4 VSRLRPYATTVFAEMSALAT-RIGAVNLGQGFPDEDGPPKMLQAAQDAIAGG-VNQYPPG------PGSAPLRRAIAAQR 75 (411)
T ss_dssp CGGGGGGSSCHHHHHHHHHH-TTTCEESSCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHH
T ss_pred hhHhHhcCccHHHHHHHHhh-cCCeeeccCcCCCCCCCHHHHHHHHHHHhcC-CCCCCCC------CCCHHHHHHHHHHH
Confidence 56777788877776665433 3345677665443 4789999998877542 1223221 22346666666777
Q ss_pred HHhcCCCC-CCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCC-
Q 018318 87 LQTFHLDP-TQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS- 164 (358)
Q Consensus 87 a~~~g~~~-~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~- 164 (358)
.+.+|.+. .+. ..+++++|++|+..++.++++|||+|++..+.|.++.. .+...|..+..+++ +.+
T Consensus 76 ~~~~g~~~~~~~-~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~---------~~~~~g~~~~~v~~--~~~~ 143 (411)
T 2o0r_A 76 RRHFGVDYDPET-EVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSP---------VVAMAGAHRVTVPL--VPDG 143 (411)
T ss_dssp HHHHCCCCCTTT-SEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTCEEEEEEC--EEET
T ss_pred HHHcCCCCCCCc-eEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH---------HHHHcCCEEEEeec--cccc
Confidence 77778542 110 12444556789999999999999999999998876531 23445654444433 322
Q ss_pred -CCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCCC---C---
Q 018318 165 -TGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANP---F--- 232 (358)
Q Consensus 165 -~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~---~--- 232 (358)
++.+|++++++++++ ++++|++++++|+ ...| +++|.++|++||+++|+|++|+.+. ..+....+ +
T Consensus 144 ~~~~~d~~~l~~~l~~-~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~~ 221 (411)
T 2o0r_A 144 RGFALDADALRRAVTP-RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLV-FDHARHLPLAGFDGM 221 (411)
T ss_dssp TEEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB-CTTCCCCCGGGSTTT
T ss_pred cCCCCCHHHHHHhhcc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccc-cCCCCCcChhhccCC
Confidence 356999999999964 7888888777665 3433 6899999999999999999986432 22211111 1
Q ss_pred CcccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHH
Q 018318 233 EYCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPA 310 (358)
Q Consensus 233 ~~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~ 310 (358)
.+.|++++|+||+++ |.+.|++++++ ++.+.+......... +.+....+++..+++.. ...
T Consensus 222 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~---------------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~~-~~~ 284 (411)
T 2o0r_A 222 AERTITISSAAKMFNCTGWKIGWACGPA---------------ELIAGVRAAKQYLSY-VGGAPFQPAVALALDTE-DAW 284 (411)
T ss_dssp GGGEEEEEEHHHHTTCTTTCEEEEECCH---------------HHHHHHHHHHHHHTS-CCCTTHHHHHHHHHHHC-HHH
T ss_pred CCCEEEEeechhhcCCccceEEEEeeCH---------------HHHHHHHHHHhhccC-CCChHHHHHHHHHHhCC-hHH
Confidence 256899999999874 55679999876 454444432111111 12233344455566543 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcCC
Q 018318 311 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~~ 352 (358)
++...+++.++++++.+.|++.|+++.. +..+..+|+++..
T Consensus 285 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~ 325 (411)
T 2o0r_A 285 VAALRNSLRARRDRLAAGLTEIGFAVHD-SYGTYFLCADPRP 325 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEECC-CCBSSEEEEECGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEecC-CCeeEEEEEecCC
Confidence 5677888899999999999988998765 4456678988753
No 53
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.90 E-value=5.9e-24 Score=200.54 Aligned_cols=273 Identities=11% Similarity=0.040 Sum_probs=174.9
Q ss_pred hcceeEeccCCCCCHHHHHHHhcccccCCCCCCCCC---CCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCcccc-ccCC
Q 018318 31 CRGIELIASENFTSFAVIEALGSALTNKYSEGMPGN---RYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQ-PYSG 106 (358)
Q Consensus 31 ~~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~---~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~-~~sG 106 (358)
++.+.+.|+++.+|++|+++|..++...++ ++.+ .+..+.++.+.+| ++|+.+++++|++.+. -.++ +++|
T Consensus 26 ~~~yl~~agpt~~p~~V~~a~~~~~~~~~~--n~~s~~~~~h~~~~~~~~~~-~ar~~la~ll~~~~~~--evif~t~~~ 100 (386)
T 3qm2_A 26 AQVFNFSSGPAMLPAEVLKLAQQELCDWHG--LGTSVMEISHRGKEFIQVAE-EAEQDFRDLLNIPSNY--KVLFCHGGG 100 (386)
T ss_dssp -CCEECCSSSCCCCHHHHHHHTCC-------------------------CCH-HHHHHHHHHHTCCTTE--EEEEEESCT
T ss_pred ccCccccCCCCCCCHHHHHHHHHHHHhccc--cCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCc--eEEEEcCCc
Confidence 356788899999999999999988865443 3222 1112345555565 6789999999996421 1244 3578
Q ss_pred hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCC-CCHHHHHHHHhhcCCcEE
Q 018318 107 SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGY-IDYDKLEEKALDFRPKLI 185 (358)
Q Consensus 107 t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-id~~~l~~~l~~~~~~~v 185 (358)
|+++.+++.+++++||+|++.... ++++... ..++..| .+..++.+. .+++. +|+++++.++++ ++++|
T Consensus 101 T~a~n~ai~~l~~~gd~v~~~~~~---~~~~~~~----~~a~~~G-~v~~v~~~~-~~~G~~~~~~~~~~~l~~-~t~lV 170 (386)
T 3qm2_A 101 RGQFAGVPLNLLGDKTTADYVDAG---YWAASAI----KEAKKYC-APQIIDAKI-TVDGKRAVKPMREWQLSD-NAAYL 170 (386)
T ss_dssp THHHHHHHHHHCTTCCEEEEEESS---HHHHHHH----HHHTTTS-EEEEEECEE-EETTEEEECCGGGCCCCT-TCSCE
T ss_pred hHHHHHHHHhccCCCCeEEEEeCC---HHHHHHH----HHHHHhC-CeEEEecCc-ccCCCCCCchHHHhhcCC-CCcEE
Confidence 899999999999999998766543 2222211 1123345 455444430 01443 788888777764 78888
Q ss_pred EEcCCCC--CCc-cchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCCe-eEEEEeCCCC
Q 018318 186 ICGGSAY--PRD-WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA-GMIFYRKGPK 261 (358)
Q Consensus 186 ~~~~~~~--~~~-~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g-G~i~~~~~~~ 261 (358)
++++.++ |.. .|+++|+ +|+++++|++|+.|.. +.+++..|++++|+|||+ ||.| |+++.+++..
T Consensus 171 ~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~-----pidv~~~~~~~~s~hK~l-GP~G~g~l~v~~~~~ 239 (386)
T 3qm2_A 171 HYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSA-----PLDVSRYGVIYAGAQKNI-GPAGLTLVIVREDLL 239 (386)
T ss_dssp EECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSS-----CCCGGGCSEEEEETTTTT-CCTTEEEEEEEGGGC
T ss_pred EEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCC-----CCCccccCEEEEeccccc-CCCccEEEEECHHHH
Confidence 8766554 774 7888885 7999999999998854 344445578889999998 7998 9999988643
Q ss_pred C-CCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHhhCCc
Q 018318 262 P-PKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP-AFKAYAKQVKANAVALGNYLTGKGY 334 (358)
Q Consensus 262 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~G~ 334 (358)
+ +.+..+.+ .++....+. ....++++...++++.+|++.+.+. +++++.++..++++++++.|++.|+
T Consensus 240 ~~~~~~~p~~--~~~~~~~~~---~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~ 309 (386)
T 3qm2_A 240 GKAHESCPSI--LDYTVLNDN---DSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDF 309 (386)
T ss_dssp SCCCTTSCGG--GCHHHHHHC----------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred hhhcccCCcH--HHHHHHhhc---CCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 2 22211111 012222121 1123467888899999999988766 6889999999999999999999886
No 54
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.3e-22 Score=197.56 Aligned_cols=267 Identities=11% Similarity=0.008 Sum_probs=173.8
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCCCCC-------CccccccCChHHHHHHHHhhcC-------------------CCCeE
Q 018318 71 GNEFIDEIENLCRSRALQTFHLDPTQW-------GVNVQPYSGSPANFAAYTAVLE-------------------PHDRI 124 (358)
Q Consensus 71 ~~~~~~~le~~~~~~la~~~g~~~~~~-------~~~v~~~sGt~a~~~~l~a~~~-------------------~gd~V 124 (358)
..+...++|+.+.+|+++++|.+...+ +..+++++||+||..++.+... +++.|
T Consensus 112 ~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v 191 (481)
T 4e1o_A 112 SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVA 191 (481)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEE
Confidence 346777999999999999999975310 1126677789999888876532 57788
Q ss_pred EEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcC-----CcEEEEc--CCCCCCccc
Q 018318 125 MGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFR-----PKLIICG--GSAYPRDWD 197 (358)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~-----~~~v~~~--~~~~~~~~~ 197 (358)
++....|.++. +.+.+.|.. ++.++++ +++.+|+++|+++|++.+ |.+|+++ .+.+|...|
T Consensus 192 ~~s~~~H~s~~---------~~~~~~g~~--~~~v~~~-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~ 259 (481)
T 4e1o_A 192 YASDQAHSSVE---------KAGLISLVK--MKFLPVD-DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC 259 (481)
T ss_dssp EEETTSCHHHH---------HHHHHHTCE--EEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred EEcCcchHHHH---------HHHHhCCCc--eEEEEcC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC
Confidence 88888776543 223445654 4444544 478999999999997642 5555544 334567889
Q ss_pred hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---CcccEEEecCCccCCCCCe-eEEEEeCCC--CCCCCCCCCCc
Q 018318 198 YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---EYCHIVTTTTHKSLRGPRA-GMIFYRKGP--KPPKKGQPEGA 271 (358)
Q Consensus 198 l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~~~d~~~~s~~K~l~g~~g-G~i~~~~~~--~~~~~~~~~~~ 271 (358)
+++|+++|++||+++++|+||+.+....+.....+ ..+|++++++||||++|.| |+++++++. .+....... +
T Consensus 260 l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~-y 338 (481)
T 4e1o_A 260 LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPI-Y 338 (481)
T ss_dssp HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCG-G
T ss_pred HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCch-h
Confidence 99999999999999999999887654433222112 2569999999999988876 787776631 000000000 0
Q ss_pred cccHH-HHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-CceeeeCCCcceEEEEE
Q 018318 272 VYDFE-DKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWD 349 (358)
Q Consensus 272 ~~~~~-~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~v~ 349 (358)
...-. .............+.. ....+++++++.+..+++++++++..++++++++.|++. ||++.. +...+++++.
T Consensus 339 l~~~~~~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~-~~~~~~v~f~ 416 (481)
T 4e1o_A 339 LRHANSGVATDFMHWQIPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPA-KRHLGLVVFR 416 (481)
T ss_dssp GCCTTTTTSCCGGGGSSSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCS-CCCSSEEEEE
T ss_pred ccCcccCCCCCcccccccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CCceeEEEEE
Confidence 00000 0000000001112222 223456677776665677899999999999999999997 999875 3466778877
Q ss_pred cCC
Q 018318 350 LRP 352 (358)
Q Consensus 350 ~~~ 352 (358)
+.+
T Consensus 417 ~~~ 419 (481)
T 4e1o_A 417 LKG 419 (481)
T ss_dssp ESS
T ss_pred eCC
Confidence 643
No 55
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.90 E-value=7.9e-23 Score=190.84 Aligned_cols=292 Identities=11% Similarity=0.004 Sum_probs=183.3
Q ss_pred cceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHH
Q 018318 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (358)
Q Consensus 32 ~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~ 111 (358)
+.+.+.+++..+|+.|++++.+.+.+.. .++.. ....+. ++.+.+++++++++|++.++ ..+++++|++|+.
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~-~~~~~----~~~~~~-~~~~~~~~~la~~~g~~~~~--~v~~~~g~t~al~ 75 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDEKI-GVISH----RSKKFE-EVYKTASDNLKTLLELPSNY--EVLFLASATEIWE 75 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHTTT-TTSCT----TSHHHH-HHHHHHHHHHHHHTTCCTTE--EEEEESCHHHHHH
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcCCc-cCcCC----CCHHHH-HHHHHHHHHHHHHhCCCCCc--EEEEeCCchHHHH
Confidence 4678889999999999988777664422 01111 122333 44456789999999986422 2345566778999
Q ss_pred HHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCC
Q 018318 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191 (358)
Q Consensus 112 ~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~ 191 (358)
.++.++++| .+++..+.+.++. +. ..+...|..+..+ +.+ .++.+|+++++ +. .++++|++++++
T Consensus 76 ~~~~~l~~~--~~i~~~~~~~~~~---~~----~~~~~~g~~~~~v--~~~-~~~~~d~~~l~--~~-~~~~~v~~~~~~ 140 (362)
T 3ffr_A 76 RIIQNCVEK--KSFHCVNGSFSKR---FY----EFAGELGREAYKE--EAA-FGKGFYPADIT--VP-ADAEIICLTHNE 140 (362)
T ss_dssp HHHHHHCSS--EEEEEECSHHHHH---HH----HHHHHTTCEEEEE--ECC-TTCCCCGGGCC--CC-TTCCEEEEESEE
T ss_pred HHHHhccCC--cEEEEcCcHHHHH---HH----HHHHHhCCCeEEE--ecC-CCCCCCHHHHh--cc-CCccEEEEEcCC
Confidence 999999887 5444443221111 00 0123346544444 433 35789999998 43 478999888766
Q ss_pred CC--CccchHHHHHHHHHh-CCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCCe-eEEEEeCCCCC-C---
Q 018318 192 YP--RDWDYARFRAVADKC-GALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA-GMIFYRKGPKP-P--- 263 (358)
Q Consensus 192 ~~--~~~~l~~i~~la~~~-g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~-~--- 263 (358)
|+ ...|+++|.++|++| |+++|+|++|+.|.. +.++..+|++++|+||+++|+.| |+++.+++..+ +
T Consensus 141 nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~-----~~~~~~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~ 215 (362)
T 3ffr_A 141 TSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYP-----KFDWTKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKAL 215 (362)
T ss_dssp TTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSS-----CCCTTSCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHH
T ss_pred CCcceeCCHHHHHHHHHhCCCCEEEEecccccCCc-----ccChhHCcEEEEecccccCCCCceEEEEECHHHHHHhhhc
Confidence 54 578999999999999 999999999876642 12233589999999999986777 88887774210 0
Q ss_pred CCCCCCCc-cccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-CceeeeCC-
Q 018318 264 KKGQPEGA-VYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGG- 340 (358)
Q Consensus 264 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~- 340 (358)
..++.... .+++....+........++++...++++..+++.+...+++.+.++..++++++++.|++. |+++..+.
T Consensus 216 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 295 (362)
T 3ffr_A 216 LAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDA 295 (362)
T ss_dssp HHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCG
T ss_pred cccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCCh
Confidence 00000000 0011111111000111345566666677777776543346788899999999999999998 99886521
Q ss_pred --CcceEEEEEcC
Q 018318 341 --TENHLVLWDLR 351 (358)
Q Consensus 341 --~~~~~~~v~~~ 351 (358)
.....+|+.+.
T Consensus 296 ~~~~~~~~~~~~~ 308 (362)
T 3ffr_A 296 KLRSMTTIVANTT 308 (362)
T ss_dssp GGBCSSEEEEEES
T ss_pred hhcCCceEEEecC
Confidence 23556777653
No 56
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.90 E-value=4.4e-22 Score=185.65 Aligned_cols=269 Identities=13% Similarity=0.032 Sum_probs=183.5
Q ss_pred cceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHH
Q 018318 32 RGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPA 109 (358)
Q Consensus 32 ~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a 109 (358)
+.+.|..+++. +++.|++++.+.+.... +|+ .+...+ .++++++++|+++++ .+++++|++|
T Consensus 17 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~y~-------~~~~~~----l~~~la~~~~~~~~~---i~~~~g~~~a 80 (354)
T 3ly1_A 17 NPIRINFNENPLGMSPKAQAAARDAVVKAN--RYA-------KNEILM----LGNKLAAHHQVEAPS---ILLTAGSSEG 80 (354)
T ss_dssp SCEECSSCCCSSCCCHHHHHHHHHTGGGTT--SCC-------HHHHHH----HHHHHHHHTTSCGGG---EEEESHHHHH
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHhhCc--CCC-------CCchHH----HHHHHHHHhCCChHH---EEEeCChHHH
Confidence 45777766554 58999999988775321 232 123334 458899999987642 2444556789
Q ss_pred HHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhh-cCCcEEEEc
Q 018318 110 NFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD-FRPKLIICG 188 (358)
Q Consensus 110 ~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~-~~~~~v~~~ 188 (358)
+..++.+++++||+|++..+.|.++.. .++..|.. +++++.+ .++.+|++++++++++ .++++|+++
T Consensus 81 ~~~~~~~l~~~gd~vl~~~~~~~~~~~---------~~~~~g~~--~~~~~~~-~~~~~d~~~l~~~l~~~~~~~~v~l~ 148 (354)
T 3ly1_A 81 IRAAIEAYASLEAQLVIPELTYGDGEH---------FAKIAGMK--VTKVKML-DNWAFDIEGLKAAVAAYSGPSIVYLV 148 (354)
T ss_dssp HHHHHHHHCCTTCEEEEESSSCTHHHH---------HHHHTTCE--EEEECCC-TTSCCCHHHHHHHHHTCSSCEEEEEE
T ss_pred HHHHHHHHhCCCCeEEECCCCchHHHH---------HHHHcCCE--EEEecCC-CCCCCCHHHHHHHhccCCCCCEEEEe
Confidence 999999999999999999998876431 23445654 4455544 2578999999999974 478999887
Q ss_pred CCCCC--CccchHHHHHHHHH--hCCEEEEechhhhhhhhccccCCCCC------cccEEEecCCccCC--CCCeeEEEE
Q 018318 189 GSAYP--RDWDYARFRAVADK--CGALLLCDMAHISGLVAAQEAANPFE------YCHIVTTTTHKSLR--GPRAGMIFY 256 (358)
Q Consensus 189 ~~~~~--~~~~l~~i~~la~~--~g~~lvvD~a~~~g~~~~~~~~~~~~------~~d~~~~s~~K~l~--g~~gG~i~~ 256 (358)
+++|+ ...|++++.++++. ||+++|+|++|+ ++...+.....+. +.+++++|+||+++ |.+.|++++
T Consensus 149 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 227 (354)
T 3ly1_A 149 NPNNPTGTITPADVIEPWIASKPANTMFIVDEAYA-EFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVA 227 (354)
T ss_dssp SSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTG-GGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEEC
T ss_pred CCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHH-HhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeec
Confidence 77765 56788888887777 999999999986 3333222111111 34588999999973 456699988
Q ss_pred eCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCcee
Q 018318 257 RKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSL 336 (358)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~ 336 (358)
++ ++.+.+...... .+++....+++..+++.. ..++...+++.++++++.+.|++.|+++
T Consensus 228 ~~---------------~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 287 (354)
T 3ly1_A 228 HP---------------TVIALMGRYVAG---EKINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLPY 287 (354)
T ss_dssp CH---------------HHHHHHGGGTTC---SCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred CH---------------HHHHHHHHhcCC---CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 66 466666554332 234444444444444321 3457788889999999999999989887
Q ss_pred eeCCCcceEEEEEcC
Q 018318 337 VTGGTENHLVLWDLR 351 (358)
Q Consensus 337 ~~~~~~~~~~~v~~~ 351 (358)
.. ..+..+|+++.
T Consensus 288 ~~--~~~~~~~~~~~ 300 (354)
T 3ly1_A 288 LP--SEGNFVFHQLV 300 (354)
T ss_dssp CC--CCSSEEEEECS
T ss_pred CC--CCceEEEEECC
Confidence 64 34455888864
No 57
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.90 E-value=3.5e-22 Score=190.83 Aligned_cols=312 Identities=12% Similarity=0.062 Sum_probs=203.6
Q ss_pred hhhcccccccchHHHHHHHHHHHHhhcceeEeccCCC--CCHHHHHHHhcccccCC-CCCCCCCCCCCCchhHHHHHHHH
Q 018318 6 EWGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENF--TSFAVIEALGSALTNKY-SEGMPGNRYYGGNEFIDEIENLC 82 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~-~~g~~~~~~~~~~~~~~~le~~~ 82 (358)
.|.+++++.++++.+..+.+... ..+.+.|..+... +++.|.+++.+.+.... ..+|+.. ....++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~------~g~~~lr~~l 76 (422)
T 3fvs_A 4 QLQARRLDGIDYNPWVEFVKLAS-EHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKT------FGYPPLTKIL 76 (422)
T ss_dssp CCSCGGGTTCCCCHHHHHHHHHH-TSCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCT------TCCHHHHHHH
T ss_pred hhHHHHhhccCccHHHHHHHHhh-cCCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCC------CCCHHHHHHH
Confidence 35678888888887776665432 3456777766543 58999999988775422 1123221 1223555556
Q ss_pred HHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeeccc-
Q 018318 83 RSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKV- 161 (358)
Q Consensus 83 ~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 161 (358)
.+++.+.+|.+.+.-...+++++|++|+..++.+++++||+|++..+.|.++.. .+...|..+..++++.
T Consensus 77 a~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g~~~~~~~~~~~ 147 (422)
T 3fvs_A 77 ASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEP---------MTMMAGGRPVFVSLKPG 147 (422)
T ss_dssp HHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTCEEEEEECBCC
T ss_pred HHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHH---------HHHHcCCEEEEEecccc
Confidence 677877777653100012444556789999999999999999999998876431 2334565444444321
Q ss_pred ---C-----CCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhcccc
Q 018318 162 ---N-----SSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEA 228 (358)
Q Consensus 162 ---~-----~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~ 228 (358)
+ ..++.+|++++++++++ ++++|++++++|+ ... ++++|.++|++||+++|+|++|+. +.+.+..
T Consensus 148 ~~~~G~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~ 225 (422)
T 3fvs_A 148 PIQNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQW-MVYDGHQ 225 (422)
T ss_dssp CCCSSSCCBGGGSBCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTCC
T ss_pred cccccccccccCCCCCHHHHHhhcCC-CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchh-hccCCCC
Confidence 0 02346899999999865 6888888877766 344 699999999999999999999763 3332221
Q ss_pred CCCCC------cccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHH
Q 018318 229 ANPFE------YCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALA 300 (358)
Q Consensus 229 ~~~~~------~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 300 (358)
..++. +.++++.|++|+++ |.+.|++++++ ++.+.+........ .+.+....+++.
T Consensus 226 ~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~~~a~~ 289 (422)
T 3fvs_A 226 HISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD---------------HIMKHLRTVHQNSV-FHCPTQSQAAVA 289 (422)
T ss_dssp CCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCH---------------HHHHHHHHHHHTTT-CCCCHHHHHHHH
T ss_pred CCChhhcccccCcEEEEecchhccCCccceEEEEEeCH---------------HHHHHHHHHHhhcc-CCCCcHHHHHHH
Confidence 12221 34588999999873 55679998877 34444443221111 123444455555
Q ss_pred HHHHHh------ccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcCC
Q 018318 301 VALKQA------STPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 301 ~al~~~------~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~~ 352 (358)
.++... ....++...+++.++++++.+.|++.|+++.. +..++.+|+++..
T Consensus 290 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~ 346 (422)
T 3fvs_A 290 ESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPII-PQGSYFLITDISD 346 (422)
T ss_dssp HHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEB-CSBSSEEEEECHH
T ss_pred HHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecC-CCeeeEEEEechh
Confidence 555531 12345778888999999999999999998775 5677889998753
No 58
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.90 E-value=3.1e-23 Score=196.62 Aligned_cols=282 Identities=14% Similarity=0.080 Sum_probs=182.3
Q ss_pred ccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh
Q 018318 38 ASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV 117 (358)
Q Consensus 38 a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~ 117 (358)
++...+++.|++++.+.+...+ +++...+..+. ....+.+++++++++++|+++++ .+++++|++|+..++.++
T Consensus 27 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~l~~~la~~~~~~~~~---v~~~~g~t~al~~~~~~l 100 (400)
T 3vax_A 27 AATTRVDQRVADIVLHWMTAEF--GNAGSRHEYGI-RAKRGVERAREYLASTVSAEPDE---LIFTSGATESNNIALLGL 100 (400)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHH--SCSSCHHHHHH-HHHHHHHHHHHHHHHHTTCCGGG---EEEESCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHhcc--CCCcccchhHH-HHHHHHHHHHHHHHHHcCCCCCc---EEEeCCHHHHHHHHHHHH
Confidence 4566789999999998876443 22222221111 12233345679999999998632 344455578999999998
Q ss_pred c----CCCC-eEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCC
Q 018318 118 L----EPHD-RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAY 192 (358)
Q Consensus 118 ~----~~gd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~ 192 (358)
+ +||| +|+++.++|+++.... ..+...|. +++.++++ .++.+|++++++++++ ++++|++++++|
T Consensus 101 ~~~~~~~gd~~Vl~~~~~~~~~~~~~------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~n 170 (400)
T 3vax_A 101 APYGERTGRRHIITSAIEHKAVLEPL------EHLAGRGF--EVDFLTPG-PSGRISVEGVMERLRP-DTLLVSLMHVNN 170 (400)
T ss_dssp HHHHHHHTCCEEEEETTSCHHHHHHH------HHHHTTTC--EEEEECCC-TTCCCCHHHHHTTCCT-TEEEEECCSBCT
T ss_pred HHhhccCCCCEEEECccccHhHHHHH------HHHHhcCC--eEEEEccC-CCCCcCHHHHHHhcCC-CceEEEEECCCC
Confidence 7 8999 9999998887654211 01122454 44455555 3678999999999875 788888887765
Q ss_pred C--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCc-ccEEEecCCccCCCCCe-eEEE-EeCC-CCCCCCC
Q 018318 193 P--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEY-CHIVTTTTHKSLRGPRA-GMIF-YRKG-PKPPKKG 266 (358)
Q Consensus 193 ~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~-~d~~~~s~~K~l~g~~g-G~i~-~~~~-~~~~~~~ 266 (358)
+ ...|+++|.++|++||+++|+|++|+.|....+ +.. +|++++|+||+ .|+.| |+++ ++++ +....
T Consensus 171 ptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~-----~~~~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~-- 242 (400)
T 3vax_A 171 ETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGD-----LTTPIDMISISGHKI-GAPKGVGALVTRRREEMDDER-- 242 (400)
T ss_dssp TTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGG-----GGSCCSEEEEETGGG-TSCSSCEEEEECBCSSSTTCB--
T ss_pred CceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcC-----hhhcCcEEEEeHHHh-CCCCceEEEEEecchhccccc--
Confidence 5 577999999999999999999999987643211 111 79999999995 56665 8888 7662 11000
Q ss_pred CCCCccccHHHHhh--hhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCC--c
Q 018318 267 QPEGAVYDFEDKIN--FAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGT--E 342 (358)
Q Consensus 267 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~--~ 342 (358)
. .+...+. ........++++...++++.++++.+. .+++++.++..++++++.+.|+..|+++..+.. .
T Consensus 243 -~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 315 (400)
T 3vax_A 243 -V-----PLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFE-AEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDHVV 315 (400)
T ss_dssp -C-----CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTSBC
T ss_pred -c-----ccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcccCC
Confidence 0 0000000 000001123455566666667776543 346788889999999999999944888875322 1
Q ss_pred ceEEEEEc
Q 018318 343 NHLVLWDL 350 (358)
Q Consensus 343 ~~~~~v~~ 350 (358)
.+.+++.+
T Consensus 316 ~~~~~~~~ 323 (400)
T 3vax_A 316 PHILNLSF 323 (400)
T ss_dssp TTEEEEEC
T ss_pred CCEEEEEe
Confidence 23555544
No 59
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.89 E-value=4e-22 Score=188.42 Aligned_cols=264 Identities=14% Similarity=0.101 Sum_probs=173.2
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh-cCCC
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV-LEPH 121 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~-~~~g 121 (358)
+++++++++.+.+.... .+ ++ ..+...+++ +.+++++|.+. .++++||++|+..++.++ +++|
T Consensus 15 ~~~~~~~a~~~~l~~~~-~~-----~~-~~~~~~~l~----~~la~~~~~~~-----~i~~~sGt~al~~~l~~l~~~~g 78 (388)
T 1b9h_A 15 YDDAERNGLVRALEQGQ-WW-----RM-GGDEVNSFE----REFAAHHGAAH-----ALAVTNGTHALELALQVMGVGPG 78 (388)
T ss_dssp CCHHHHHHHHHHHHTSC-CB-----TT-TCSHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHcCC-ee-----ec-CCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCCc
Confidence 34899999988775421 11 11 123445555 78999999874 367888999999999999 8999
Q ss_pred CeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHH
Q 018318 122 DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARF 201 (358)
Q Consensus 122 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i 201 (358)
|+|+++.++|.+... .+...|.. ++.++++++++.+|++++++++++ ++++|+.. +.+|...++++|
T Consensus 79 d~Vi~~~~~~~~~~~---------~~~~~g~~--~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~-n~tG~~~~l~~i 145 (388)
T 1b9h_A 79 TEVIVPAFTFISSSQ---------AAQRLGAV--TVPVDVDAATYNLDPEAVAAAVTP-RTKVIMPV-HMAGLMADMDAL 145 (388)
T ss_dssp CEEEEESSSCTHHHH---------HHHHTTCE--EEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB-CGGGCCCCHHHH
T ss_pred CEEEECCCccHHHHH---------HHHHcCCE--EEEEecCCCcCCCCHHHHHHhcCc-CceEEEEe-CCccCcCCHHHH
Confidence 999999998876541 23445654 455555544578999999999864 67777622 235677899999
Q ss_pred HHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCCeeEEEEeCCCCCCCCCCCCCccccH--HHHh
Q 018318 202 RAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDF--EDKI 279 (358)
Q Consensus 202 ~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~gG~i~~~~~~~~~~~~~~~~~~~~~--~~~~ 279 (358)
.++|++||+++|+|++|+.|....+.....+..+++.++|.||+++|++||+++++++ .+ .+.+
T Consensus 146 ~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~--------------~~~~~~~~ 211 (388)
T 1b9h_A 146 AKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDG--------------ETEKYETA 211 (388)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTT--------------CHHHHHHH
T ss_pred HHHHHHcCCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCCeEEEEECCH--------------HHHHHHHH
Confidence 9999999999999999987765432111111135566666779998889999999875 23 3333
Q ss_pred hhhcCCC----------C-cCCC-ChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-CceeeeC-----CC
Q 018318 280 NFAVFPS----------L-QGGP-HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTG-----GT 341 (358)
Q Consensus 280 ~~~~~~~----------~-~~~~-~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~-----~~ 341 (358)
......+ . .+.. ....+.+ ++.+..+ +.+++..++..++++++.+.|++. |+++... +.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-a~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 288 (388)
T 1b9h_A 212 FLRHSCGRPRDDRRYFHKIAGSNMRLNEFSA-SVLRAQL--ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRN 288 (388)
T ss_dssp HHHTBTTCCTTCSSCCCCSCCCBCBCBHHHH-HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBC
T ss_pred HHHHhCCCCccCccceeecccccCCcCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCcc
Confidence 2111100 0 0111 0111211 1112221 234567788888999999999987 8887642 13
Q ss_pred cceEEEEEcCC
Q 018318 342 ENHLVLWDLRP 352 (358)
Q Consensus 342 ~~~~~~v~~~~ 352 (358)
..+.+|+.+..
T Consensus 289 ~~~~~~~~~~~ 299 (388)
T 1b9h_A 289 SHYMAMFRIPG 299 (388)
T ss_dssp CCSEEEEECTT
T ss_pred ceEEEEEEeCC
Confidence 35788888753
No 60
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.89 E-value=1.8e-21 Score=182.23 Aligned_cols=291 Identities=14% Similarity=0.077 Sum_probs=189.6
Q ss_pred hcccccccchHHHHHHHHHHHH--h-hcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHH
Q 018318 8 GNSSLETVDPEIHDLIEKEKRR--Q-CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLC 82 (358)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~ 82 (358)
.+..++.+.++.......+..+ . ++.+.|..++++ +++.|.+++.+.+.... +|+. +...++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~y~~-------~~~~~l---- 72 (363)
T 3ffh_A 6 WKKSLAGLSSYKPGKREEEVMAELGLTKITKLSSNENPLGTSKKVAAIQANSSVETE--IYPD-------GWASSL---- 72 (363)
T ss_dssp CCGGGTTCCC----CHHHHHHHTTTCSCCEECSSCSCTTCCCHHHHHHHHTCBSCCC--BC-----------CHHH----
T ss_pred hhHHHHhCCCCCCCCCHHHHHHhcCCCceEEccCCCCCCCCCHHHHHHHHHHHHHhh--cCCC-------cchHHH----
Confidence 4566677766654332222121 1 345777776554 48999999987664321 2322 122344
Q ss_pred HHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccC
Q 018318 83 RSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (358)
Q Consensus 83 ~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (358)
++++++++|+++++ .+++++|++|+..++.+++++||+|++..+.|.++.. .+...|.. ++.++.+
T Consensus 73 r~~la~~~~~~~~~---v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g~~--~~~v~~~ 138 (363)
T 3ffh_A 73 RKEVADFYQLEEEE---LIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQ---------NALIEGAE--VREIPLL 138 (363)
T ss_dssp HHHHHHHHTCCGGG---EEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHH---------HHHHHTCE--EEEEECC
T ss_pred HHHHHHHhCCChhh---EEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHH---------HHHHcCCE--EEEecCC
Confidence 48899999987642 2444555779999999999999999999987765331 23345654 4444544
Q ss_pred CCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHHh--CCEEEEechhhhhhhhccccCCCCC-----
Q 018318 163 SSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADKC--GALLLCDMAHISGLVAAQEAANPFE----- 233 (358)
Q Consensus 163 ~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~--g~~lvvD~a~~~g~~~~~~~~~~~~----- 233 (358)
+ ++.+|++++++++.+ ++++|++++++|+ ...|+++|.++|+.+ |+++|+|++|+.. .. +.....+.
T Consensus 139 ~-~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~-~~-~~~~~~~~~~~~~ 214 (363)
T 3ffh_A 139 Q-DGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEY-VT-PQPEKHEKLVRTY 214 (363)
T ss_dssp T-TSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGG-CS-SCCCCCGGGGGTC
T ss_pred C-CCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhh-cC-ccccCHHHHhhcC
Confidence 2 678999999999975 7899888877765 577899999999888 9999999998733 22 21111111
Q ss_pred cccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHH
Q 018318 234 YCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAF 311 (358)
Q Consensus 234 ~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~ 311 (358)
+.++++.|++|+++ |.+.|++++++ ++.+.+.....++ +++....+++..+++. ...+
T Consensus 215 ~~~i~~~s~sK~~g~~G~r~G~~~~~~---------------~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~--~~~~ 274 (363)
T 3ffh_A 215 KNLIITRTFSKIYGLASARVGYGIADK---------------EIIRQLNIVRPPF---NTTSIGQKLAIEAIKD--QAFI 274 (363)
T ss_dssp TTEEEEEESSSTTCCSSCCCEEEEECH---------------HHHHHHHHTCCSC---CCBHHHHHHHHHHHHC--HHHH
T ss_pred CCEEEEeechhhhcCchhceeeeecCH---------------HHHHHHHHhCCCC---CCCHHHHHHHHHHhcC--HHHH
Confidence 33478899999873 45669999866 4666665543322 3444444554555542 1345
Q ss_pred HHHHHHHHHHHHHHHHHHhh-CCceeeeCCCcceEEEEEcC
Q 018318 312 KAYAKQVKANAVALGNYLTG-KGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 312 ~~~~~~~~~~~~~l~~~L~~-~G~~~~~~~~~~~~~~v~~~ 351 (358)
+...++..++++++.+.|++ .|+++.. ..+..+|+++.
T Consensus 275 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~--~~~~~~~~~~~ 313 (363)
T 3ffh_A 275 GECRTSNANGIKQYEAFAKRFEKVKLYP--ANGNFVLIDLG 313 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCEECC--CCSSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCceECC--CCCeEEEEECC
Confidence 77888899999999999999 7998864 33455788864
No 61
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.89 E-value=4.6e-23 Score=194.51 Aligned_cols=294 Identities=14% Similarity=0.073 Sum_probs=185.7
Q ss_pred ceeEecc-CCCCCHHHHHHHhcccccCCCCCCCCC-CCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHH
Q 018318 33 GIELIAS-ENFTSFAVIEALGSALTNKYSEGMPGN-RYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPAN 110 (358)
Q Consensus 33 ~~~l~a~-~~~~~~~V~~a~~~~~~~~~~~g~~~~-~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~ 110 (358)
.+.+..+ ....|+.|++++.+.+.... ...+.+ ..+. ... ......++.+++++|++.++ .+++++|++|+
T Consensus 17 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~y~--~~~-~~~~~l~~~la~~~g~~~~~---v~~~~g~t~a~ 89 (390)
T 1elu_A 17 KTYFNFGGQGILPTVALEAITAMYGYLQ-ENGPFSIAANQ--HIQ-QLIAQLRQALAETFNVDPNT---ITITDNVTTGC 89 (390)
T ss_dssp SEECCTTTCCCCCHHHHHHHHHHHHHHH-HHCSSSHHHHH--HHH-HHHHHHHHHHHHHTTSCGGG---EEEESSHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHHHh-ccCCcchhhHH--HHH-HHHHHHHHHHHHHcCCCHHH---EEEeCChHHHH
Confidence 3444433 34568899999988765421 001110 0010 111 22235568999999987632 34455667899
Q ss_pred HHHHHhh-cCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCC-CCCCCCHHHHHHHHhhcCCcEEEEc
Q 018318 111 FAAYTAV-LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS-STGYIDYDKLEEKALDFRPKLIICG 188 (358)
Q Consensus 111 ~~~l~a~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~l~~~~~~~v~~~ 188 (358)
..++.++ +++||+|+++.+.|.++..... ......|..+ +.++.+. +++.+|++++++++++ ++++|+++
T Consensus 90 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~~~~~g~~~--~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 161 (390)
T 1elu_A 90 DIVLWGLDWHQGDEILLTDCEHPGIIAIVQ-----AIAARFGITY--RFFPVAATLNQGDAAAVLANHLGP-KTRLVILS 161 (390)
T ss_dssp HHHHHHSCCCTTCEEEEETTCCHHHHHHHH-----HHHHHHCCEE--EEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEE
T ss_pred HHHHhCCCCCCCCEEEEecCcccHHHHHHH-----HHHHHhCcEE--EEEcCCCCCCccchHHHHHHhcCC-CceEEEEe
Confidence 9999999 8999999999998876431100 0012345544 3444331 3578999999999865 68888888
Q ss_pred CCCCC--CccchHHHHHHHH----HhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCC
Q 018318 189 GSAYP--RDWDYARFRAVAD----KCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKG 259 (358)
Q Consensus 189 ~~~~~--~~~~l~~i~~la~----~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~ 259 (358)
+++|+ ...|+++|.++|+ +||+++|+|++|+.|.. +..+. ++|++++|+||++.|+.| |+++++++
T Consensus 162 ~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~ 236 (390)
T 1elu_A 162 HLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSL-----PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGD 236 (390)
T ss_dssp SBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTB-----CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTT
T ss_pred ccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCc-----CCChhhcCCCEEEccccccccCCCceEEEEECHH
Confidence 77654 6778999999999 99999999999986642 12232 689999999998777766 99999876
Q ss_pred CCC-CCC---CCCCCc------cccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHH
Q 018318 260 PKP-PKK---GQPEGA------VYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPA-FKAYAKQVKANAVALGNY 328 (358)
Q Consensus 260 ~~~-~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~-~~~~~~~~~~~~~~l~~~ 328 (358)
..+ +.+ ++.... .+.+.+... .+ ..++++...++++.++++.+...+ ++...++..++++++.+.
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~ 312 (390)
T 1elu_A 237 CLGEINPTYVGWRSITYGAKGEPTGWAEGGK--RF--EVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRG 312 (390)
T ss_dssp TGGGCCCCSCCTTTEEECTTSCEEEECSGGG--GG--CCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred hHhhcCCccccCCcccccccCcccccccchH--hh--CCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 422 111 000000 000000000 01 123455555666667777654333 677888999999999999
Q ss_pred HhhC-CceeeeC-CCcceEEEEEc
Q 018318 329 LTGK-GYSLVTG-GTENHLVLWDL 350 (358)
Q Consensus 329 L~~~-G~~~~~~-~~~~~~~~v~~ 350 (358)
|++. |+++..+ ...+..+++++
T Consensus 313 L~~~~g~~~~~~~~~~~~~~~~~~ 336 (390)
T 1elu_A 313 LNQLPHVHCLATSAPQAGLVSFTV 336 (390)
T ss_dssp HHHSTTEEESCSSCCSSSEEEEEE
T ss_pred HHhcCCcEEecCccccccEEEEEc
Confidence 9997 8888742 23444566665
No 62
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.89 E-value=1.1e-21 Score=183.96 Aligned_cols=270 Identities=12% Similarity=0.067 Sum_probs=181.8
Q ss_pred cceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCC-CCCCCCccccccCChH
Q 018318 32 RGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHL-DPTQWGVNVQPYSGSP 108 (358)
Q Consensus 32 ~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~-~~~~~~~~v~~~sGt~ 108 (358)
+.+.|..+++. +|+.|.+++.+.+......+|+. +...+++ +++++++|+ +++ ..+++++|++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-------~~~~~l~----~~la~~~g~~~~~---~i~~~~g~t~ 96 (367)
T 3euc_A 31 GLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-------PSSEALR----AKLKEVMQVPAGM---EVLLGNGSDE 96 (367)
T ss_dssp TCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-------CCHHHHH----HHHHHHHTCCTTC---EEEEEEHHHH
T ss_pred CeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-------CcHHHHH----HHHHHHhCCCCcc---eEEEcCCHHH
Confidence 45777777654 48999999988775321123322 2233444 789999998 443 2344455677
Q ss_pred HHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEc
Q 018318 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG 188 (358)
Q Consensus 109 a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~ 188 (358)
|+..++.+++++||+|++..+.|.++.. .+...|.. ++.++.+ .++.+|+++++++++++++++|+++
T Consensus 97 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~---------~~~~~g~~--~~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 97 IISMLALAAARPGAKVMAPVPGFVMYAM---------SAQFAGLE--FVGVPLR-ADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp HHHHHHHHTCCTTCEEEEEESCSCCSCH---------HHHTTTCE--EEEEECC-TTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEcCCCHHHHHH---------HHHHcCCe--EEEecCC-CCCCCCHHHHHHHhhccCCCEEEEc
Confidence 9999999999999999999988875431 23445654 4444544 2678999999999987689999888
Q ss_pred CCCCC--Cc---cchHHHHHHHHHh--CCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccC-CCCCeeEEEEeC
Q 018318 189 GSAYP--RD---WDYARFRAVADKC--GALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSL-RGPRAGMIFYRK 258 (358)
Q Consensus 189 ~~~~~--~~---~~l~~i~~la~~~--g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l-~g~~gG~i~~~~ 258 (358)
+++|+ .. .++++|.++|++| |+++|+|++|+. +...+... .++ +.+++++|+||+. +|.+.|++++++
T Consensus 165 ~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~-~~~~~~~~-~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~ 242 (367)
T 3euc_A 165 YPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQP-FAQESWMS-RLTDFGNLLVMRTVSKLGLAGIRLGYVAGDP 242 (367)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCC-SSSCCSGG-GGGTCTTEEEEEECCCTTSCSCCEEEEEECH
T ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchh-hcccchHH-HHhhCCCEEEEecchhhcccccCceeeeeCH
Confidence 77765 33 3588889999999 999999999763 22211111 112 4568899999982 455679999866
Q ss_pred CCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-Cceee
Q 018318 259 GPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLV 337 (358)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~ 337 (358)
++.+.+.....++ +.+....+++..+++. ...++...++..++++++.+.|++. |+++.
T Consensus 243 ---------------~~~~~~~~~~~~~---~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~ 302 (367)
T 3euc_A 243 ---------------QWLEQLDKVRPPY---NVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVF 302 (367)
T ss_dssp ---------------HHHHHHGGGCCSS---CCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC
T ss_pred ---------------HHHHHHHHhCCCC---CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC
Confidence 4556555433222 2344444444444443 2335788888999999999999998 89865
Q ss_pred eCCCcceEEEEEcC
Q 018318 338 TGGTENHLVLWDLR 351 (358)
Q Consensus 338 ~~~~~~~~~~v~~~ 351 (358)
. ..+..+|+++.
T Consensus 303 ~--~~~~~~~~~~~ 314 (367)
T 3euc_A 303 P--SAANFLLARVP 314 (367)
T ss_dssp C--CSSSEEEEECS
T ss_pred C--CCCeEEEEECC
Confidence 3 34556777763
No 63
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.89 E-value=2.1e-22 Score=190.64 Aligned_cols=301 Identities=14% Similarity=0.075 Sum_probs=190.1
Q ss_pred hhcccccccchHHHHHHHHHHHHh----hcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHH
Q 018318 7 WGNSSLETVDPEIHDLIEKEKRRQ----CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIEN 80 (358)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~ 80 (358)
|-+++++.++++.+..+.+...+. ++.+.+..+.+. .++.+.+++.+.+.... .+|+. .+...++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~------~~g~~~lr~ 85 (389)
T 1o4s_A 13 MVSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGE-VKYTD------PRGIYELRE 85 (389)
T ss_dssp -CCHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCC-CCCCC------TTCCHHHHH
T ss_pred HHHHHHhhcCccHHHHHHHHHHHHHhcCCCEEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCCHHHHH
Confidence 455666666666544444333322 356777766543 47899999887774321 22322 122346766
Q ss_pred HHHHHHHHhcCCC--CCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEee
Q 018318 81 LCRSRALQTFHLD--PTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLP 158 (358)
Q Consensus 81 ~~~~~la~~~g~~--~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 158 (358)
.+.+++.+.+|++ ++ ..+++++|++|+..++.+++++||+|++..+.|.++.. .+...|..+. .
T Consensus 86 ~la~~~~~~~g~~~~~~---~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~---------~~~~~g~~~~--~ 151 (389)
T 1o4s_A 86 GIAKRIGERYKKDISPD---QVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIP---------QIILAGGTVN--V 151 (389)
T ss_dssp HHHHHHHHHHTCCCCGG---GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTCEEE--E
T ss_pred HHHHHHHHHhCCCCCHH---HEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHH---------HHHHcCCEEE--E
Confidence 6666666666863 32 23444556789999999999999999999998876531 2344565444 4
Q ss_pred cccCC-CCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCC--
Q 018318 159 YKVNS-STGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAAN-- 230 (358)
Q Consensus 159 ~~~~~-~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~-- 230 (358)
++.+. +++.+|++++++++++ ++++|++++++|+ ...| +++|.++|++||+++|+|++|+.+. ..+....
T Consensus 152 v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~-~~g~~~~~~ 229 (389)
T 1o4s_A 152 VETFMSKNFQPSLEEVEGLLVG-KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLV-YTDEFTSIL 229 (389)
T ss_dssp EECCGGGTTCCCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSB-CSSCCCCHH
T ss_pred EecCCccCCCCCHHHHHHhccc-CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccc-cCCCCCCHh
Confidence 44332 2467899999999865 6888888777665 4444 9999999999999999999987543 2221110
Q ss_pred CC---CcccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHH
Q 018318 231 PF---EYCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQ 305 (358)
Q Consensus 231 ~~---~~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~ 305 (358)
.+ .+.|++++|+||+++ |.+.|++++++ ++.+.+.........+ .+.....+...++
T Consensus 230 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~---------------~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l-- 291 (389)
T 1o4s_A 230 DVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE---------------KVATAVSKIQSHTTSC-INTVAQYAALKAL-- 291 (389)
T ss_dssp HHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH---------------HHHHHHHHHHHHHTCS-CCHHHHHHHHHHT--
T ss_pred hcCCCCCcEEEEeechhhcCCcccceEEEEeCH---------------HHHHHHHHHhhhcccC-CCHHHHHHHHHHH--
Confidence 11 256899999999974 44569999876 4544444322111111 2222222222222
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 306 ASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
.. +++...+++.++++++.+.|++.|+++.. +..++.+|+++.
T Consensus 292 -~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~ 334 (389)
T 1o4s_A 292 -EV-DNSYMVQTFKERKNFVVERLKKMGVKFVE-PEGAFYLFFKVR 334 (389)
T ss_dssp -TC-CCHHHHHHHHHHHHHHHHHHHHTTCCCCC-CSBSSEEEEECS
T ss_pred -hc-cHHHHHHHHHHHHHHHHHHHHhcCCeeec-CCcceEEEEeCC
Confidence 22 24667788889999999999988988764 445667888763
No 64
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.89 E-value=1.6e-21 Score=184.52 Aligned_cols=300 Identities=17% Similarity=0.080 Sum_probs=187.1
Q ss_pred cccccchHHHHHHHHHHHH----hhcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHH
Q 018318 11 SLETVDPEIHDLIEKEKRR----QCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRS 84 (358)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~----~~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~ 84 (358)
++..++++.+..+.+...+ .++.+.+..+.+. ++|.|.+++.+.+.... .+|+.. ....++++.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~y~~~------~g~~~lr~~ia~ 79 (391)
T 3h14_A 7 SRSAVDPFIVMDVMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDA-LGYTVA------LGLPALRQRIAR 79 (391)
T ss_dssp STTCCCCCTTHHHHHHHHHHHHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC-----------------CCHHHHHHHHH
T ss_pred hHhhcCcchHHHHHHHHHHHHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CChHHHHHHHHH
Confidence 4555556544444333222 2456777776553 37899999988775422 233221 123355555556
Q ss_pred HHHHhcCC--CCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccC
Q 018318 85 RALQTFHL--DPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (358)
Q Consensus 85 ~la~~~g~--~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (358)
++.+.+|. +++ ..+++++|++|+..++.+++++||+|++..+.|.++.. .+...|..+..+ +++
T Consensus 80 ~~~~~~g~~~~~~---~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~---------~~~~~g~~~~~v--~~~ 145 (391)
T 3h14_A 80 LYGEWYGVDLDPG---RVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQ---------ILRALGLVPVDL--PTA 145 (391)
T ss_dssp HHHHHHCCCCCGG---GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH---------HHHHTTCEEEEE--ECC
T ss_pred HHHHHhCCCCCHH---HEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHH---------HHHHcCCEEEEe--ecC
Confidence 67766674 333 23444555789999999999999999999988865431 234456544444 443
Q ss_pred CC-CCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--c
Q 018318 163 SS-TGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--Y 234 (358)
Q Consensus 163 ~~-~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~ 234 (358)
.+ ++.+|+++++++ ++++|++++++|+ ...| +++|.++|++||+++|+|++|+. +...+....... .
T Consensus 146 ~~~~~~~d~~~l~~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~ 220 (391)
T 3h14_A 146 PENRLQPVPADFAGL----DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHG-IEYEAKAVTALELTD 220 (391)
T ss_dssp GGGTTSCCHHHHTTS----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBSSSCCCCGGGTCS
T ss_pred cccCCCCCHHHHHhc----CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchh-cccCCCCcChhhcCC
Confidence 22 357899998775 6888888777765 3444 88999999999999999999763 333221111111 4
Q ss_pred ccEEEecCCccC--CCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHH
Q 018318 235 CHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFK 312 (358)
Q Consensus 235 ~d~~~~s~~K~l--~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~ 312 (358)
.++++.|++|++ +|.+.|+++++++ +.+.+........ .+++....+++.+++. ....++
T Consensus 221 ~~i~~~s~sK~~g~~G~r~G~~~~~~~---------------~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~--~~~~~~ 282 (391)
T 3h14_A 221 ECYVINSFSKYFSMTGWRVGWMVVPED---------------QVRVVERIAQNMF-ICAPHASQVAALAALD--CDAELQ 282 (391)
T ss_dssp SSEEEEESSSTTCCTTSCCEEEECCGG---------------GHHHHHHHHHHTT-CCCCHHHHHHHHHHTT--CHHHHH
T ss_pred CEEEEEechhccCCccceeEEEEeCHH---------------HHHHHHHHHhhhc-cCCCHHHHHHHHHHhC--ChHHHH
Confidence 568899999987 4566799998774 4444443221111 2233333334334444 223457
Q ss_pred HHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcCCCC
Q 018318 313 AYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLG 354 (358)
Q Consensus 313 ~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~~~~ 354 (358)
...+++.++++++.+.|++.|+.....+..++.+|+++...+
T Consensus 283 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (391)
T 3h14_A 283 ANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLT 324 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCccC
Confidence 788889999999999999988765433456678899876533
No 65
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.89 E-value=1.1e-21 Score=185.40 Aligned_cols=306 Identities=17% Similarity=0.107 Sum_probs=193.2
Q ss_pred hcccccccchHHHHHHHHHHHHh----hcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHH
Q 018318 8 GNSSLETVDPEIHDLIEKEKRRQ----CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENL 81 (358)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~ 81 (358)
.+.+++.++++.+..+.+...+. .+.+.|..+++. +++.+.+++.+.+.... .+|+.. ....++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~------~g~~~lr~~ 76 (385)
T 1b5p_A 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGK-TKYAPP------AGIPELREA 76 (385)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCCT------TCCHHHHHH
T ss_pred hhhHHhhcCcchHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CCCHHHHHH
Confidence 35566666676665554443322 245666665542 47889998877664322 233221 122355555
Q ss_pred HHHHHHHhcCCC--CCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeec
Q 018318 82 CRSRALQTFHLD--PTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPY 159 (358)
Q Consensus 82 ~~~~la~~~g~~--~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 159 (358)
+.+++.+.+|++ ++ ..+++++|++|+..++.++++|||+|++..|+|.++.. .++..|..+ +.+
T Consensus 77 ia~~~~~~~g~~~~~~---~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---------~~~~~g~~~--~~v 142 (385)
T 1b5p_A 77 LAEKFRRENGLSVTPE---ETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPE---------MVRFAGGVV--VEV 142 (385)
T ss_dssp HHHHHHHTTCCCCCGG---GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH---------HHHHTTCEE--EEE
T ss_pred HHHHHHHHhCCCCChH---HEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHH---------HHHHcCCEE--EEe
Confidence 667777767753 32 12444455789999999999999999999998875431 234456544 444
Q ss_pred ccCC-CCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Cc---cchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC-
Q 018318 160 KVNS-STGYIDYDKLEEKALDFRPKLIICGGSAYP--RD---WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF- 232 (358)
Q Consensus 160 ~~~~-~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~---~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~- 232 (358)
+.+. +++.+|++++++++.+ ++++|++++++|| .. .++++|.++|++||+++|+|++|+. +.+.+.. .++
T Consensus 143 ~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~-~~~~ 219 (385)
T 1b5p_A 143 ETLPEEGFVPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEH-LLYEGEH-FSPG 219 (385)
T ss_dssp ECCGGGTTCCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBSSSCC-CCGG
T ss_pred ecCcccCCCCCHHHHHHhcCC-CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchh-cccCCCC-CCHH
Confidence 4442 2467999999998865 6888888878776 33 3489999999999999999999763 3332211 122
Q ss_pred --C-cccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHH--
Q 018318 233 --E-YCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQ-- 305 (358)
Q Consensus 233 --~-~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~-- 305 (358)
. +.++++.|+||+++ |.+.|++++++ ++.+.+......... +++.....++..+++.
T Consensus 220 ~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~---------------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~~~ 283 (385)
T 1b5p_A 220 RVAPEHTLTVNGAAKAFAMTGWRIGYACGPK---------------EVIKAMASVSRQSTT-SPDTIAQWATLEALTNQE 283 (385)
T ss_dssp GTCTTTEEEEEESTTTTTCGGGCCEEEECCH---------------HHHHHHHHHHHTTTC-SCCHHHHHHHHHHHHCHH
T ss_pred HcCCCCEEEEEechhhcCCcccceEEEEeCH---------------HHHHHHHHHHhhccC-CCCHHHHHHHHHHHhCCC
Confidence 1 34688999999874 55679999876 455544432222211 2233333333344432
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcCCCC
Q 018318 306 ASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLG 354 (358)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~~~~ 354 (358)
.....++...+++.++++++.+.|++.|+++.. +..++.+|+++...|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~ 331 (385)
T 1b5p_A 284 ASRAFVEMAREAYRRRRDLLLEGLTALGLKAVR-PSGAFYVLMDTSPIA 331 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CSBTTEEEEECTTTC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHCCCeecC-CCeeEEEEEecCCCC
Confidence 011235667788888999999999888988765 456677888875433
No 66
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.89 E-value=3.7e-22 Score=187.98 Aligned_cols=285 Identities=15% Similarity=0.185 Sum_probs=184.3
Q ss_pred cceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC--CCCCCCCccccccCCh
Q 018318 32 RGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH--LDPTQWGVNVQPYSGS 107 (358)
Q Consensus 32 ~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g--~~~~~~~~~v~~~sGt 107 (358)
+.+.+..+++. ++|.|.+++.+.+.... .+|+.. ..++++.+++++++.+| ++++ ..+++++|+
T Consensus 25 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~--------~~~~~~~l~~~l~~~~g~~~~~~---~v~~~~g~~ 92 (383)
T 3kax_A 25 ELIHAWIADMDFEVPQPIQTALKKRIEHPI-FGYTLP--------PENIGDIICNWTKKQYNWDIQKE---WIVFSAGIV 92 (383)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHSCC-CCCCCC--------CTTHHHHHHHHHHHHHCCCCCGG---GEEEESCHH
T ss_pred CeeecccccCCCCCCHHHHHHHHHHHhcCC-CCCCCC--------CHHHHHHHHHHHHHHhCCCCChh---hEEEcCCHH
Confidence 45667666543 48999999988775422 233321 12344455688999998 4443 224445556
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEE
Q 018318 108 PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC 187 (358)
Q Consensus 108 ~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~ 187 (358)
+|+..++.+++++||+|++..+.|.++.. .+...|..+..++++.+..++.+|++++++++. .++++|++
T Consensus 93 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~v~i 162 (383)
T 3kax_A 93 PALSTSIQAFTKENESVLVQPPIYPPFFE---------MVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQ-QGVKLMLL 162 (383)
T ss_dssp HHHHHHHHHHCCTTCEEEECSSCCHHHHH---------HHHHTTCEEEECCCEEETTEEECCHHHHHHHHT-TTCCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCcHHHHH---------HHHHcCCEEEeccceecCCcEEEcHHHHHHHhC-cCCeEEEE
Confidence 79999999999999999999988876431 234456544433332111124599999999994 47899888
Q ss_pred cCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC-------cccEEEecCCccCC--CCCeeE
Q 018318 188 GGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-------YCHIVTTTTHKSLR--GPRAGM 253 (358)
Q Consensus 188 ~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-------~~d~~~~s~~K~l~--g~~gG~ 253 (358)
++++|+ ... ++++|.++|++||+++|+|++|+. +...+....++. +.++++.|+||+++ |.+.|+
T Consensus 163 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 241 (383)
T 3kax_A 163 CSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSD-IIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQASI 241 (383)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEE
T ss_pred eCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccc-cccCCCCceeHhhcCccccCcEEEEEEChhhccCcchhheE
Confidence 877766 333 467777889999999999999864 333222112221 23488999999873 456699
Q ss_pred EEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-
Q 018318 254 IFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK- 332 (358)
Q Consensus 254 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 332 (358)
++++++ ++.+.+.........++++....+++.+++... .+.++...+++.++++++.+.|++.
T Consensus 242 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~ 306 (383)
T 3kax_A 242 IIIPNE--------------KLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTEC-NDWLNEIRFYIEDNAKFACEYIKDHI 306 (383)
T ss_dssp EECCCH--------------HHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEeCCH--------------HHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 988553 455555433222212234545555444444431 2235777888999999999999985
Q ss_pred -CceeeeCCCcceEEEEEcCCCCC
Q 018318 333 -GYSLVTGGTENHLVLWDLRPLGL 355 (358)
Q Consensus 333 -G~~~~~~~~~~~~~~v~~~~~~~ 355 (358)
|+++.. +..+..+|+++...|.
T Consensus 307 ~~~~~~~-~~~~~~~~~~~~~~~~ 329 (383)
T 3kax_A 307 PTLSVMK-PEGSFLLWIDCSALNL 329 (383)
T ss_dssp TTCEECC-CSBSSEEEEECGGGCC
T ss_pred CCceEec-CCceEEEEEEccccCC
Confidence 898875 4567778898875443
No 67
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.89 E-value=4.4e-22 Score=188.78 Aligned_cols=280 Identities=15% Similarity=0.159 Sum_probs=183.2
Q ss_pred cceeEeccCC--CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC--CCCCCCCccccccC-C
Q 018318 32 RGIELIASEN--FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH--LDPTQWGVNVQPYS-G 106 (358)
Q Consensus 32 ~~~~l~a~~~--~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g--~~~~~~~~~v~~~s-G 106 (358)
+.+.+..+.. .+++.|.+++.+.+.... .+|+. + ..++++.+.+++++.+| ++.+ .|++++ |
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~-----~---~~~l~~~la~~l~~~~g~~~~~~----~v~~t~g~ 98 (399)
T 1c7n_A 32 EVVPLSVADMEFKNPPELIEGLKKYLDETV-LGYTG-----P---TEEYKKTVKKWMKDRHQWDIQTD----WIINTAGV 98 (399)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHCC-CSSBC-----C---CHHHHHHHHHHHHHHHCCCCCGG----GEEEESSH
T ss_pred CceeeeecCCCCCCCHHHHHHHHHHHhcCC-CCCCC-----C---cHHHHHHHHHHHHHHhCCCCChh----hEEEcCCH
Confidence 5566766554 347899999988764321 12221 1 34566566677777778 4443 244455 4
Q ss_pred hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCC--CCCCCHHHHHHHHhhcCCcE
Q 018318 107 SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS--TGYIDYDKLEEKALDFRPKL 184 (358)
Q Consensus 107 t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~id~~~l~~~l~~~~~~~ 184 (358)
++|+..++.++++|||+|++..+.|.++.. .+...|..+ +.++.+.+ ++.+|++++++++++.++++
T Consensus 99 ~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~---------~~~~~g~~~--~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~ 167 (399)
T 1c7n_A 99 VPAVFNAVREFTKPGDGVIIITPVYYPFFM---------AIKNQERKI--IECELLEKDGYYTIDFQKLEKLSKDKNNKA 167 (399)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSSCCTHHHH---------HHHTTTCEE--EECCCEEETTEEECCHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCcHhHHH---------HHHHcCCEE--EecccccCCCCEEEcHHHHHHHhccCCCcE
Confidence 679999999999999999999998876531 233456543 44443211 23599999999997457888
Q ss_pred EEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC-------cccEEEecCCccCC--CCC
Q 018318 185 IICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-------YCHIVTTTTHKSLR--GPR 250 (358)
Q Consensus 185 v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-------~~d~~~~s~~K~l~--g~~ 250 (358)
|++++++|| ...| +++|.++|++||+++|+|++|+.. ...+....++. +.++++.|+||+++ |.+
T Consensus 168 v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 246 (399)
T 1c7n_A 168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDL-IMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMG 246 (399)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTC-BCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGC
T ss_pred EEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCcccHHHcCccccCcEEEEEeChhhccccchh
Confidence 888777765 3455 999999999999999999998643 22221111221 23588999999873 456
Q ss_pred eeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh
Q 018318 251 AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLT 330 (358)
Q Consensus 251 gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 330 (358)
.|+++++++ ++.+.+.........++++....+++.+++... ...++...++..++++++.+.|+
T Consensus 247 ~G~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~ 311 (399)
T 1c7n_A 247 MSNIIIKNP--------------DIRERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFE 311 (399)
T ss_dssp CEEEECCCH--------------HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCH--------------HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 799998753 455555443222222234444455545555542 23356778888999999999998
Q ss_pred h-C-CceeeeCCCcceEEEEEcCC
Q 018318 331 G-K-GYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 331 ~-~-G~~~~~~~~~~~~~~v~~~~ 352 (358)
+ . |+++.. +..+..+|+++..
T Consensus 312 ~~~~~~~~~~-~~~~~~~~~~~~~ 334 (399)
T 1c7n_A 312 VNHPEIKAPL-IEGTYLQWIDFRA 334 (399)
T ss_dssp HHCTTSBCCC-CSBSSEEEEECGG
T ss_pred hhCCCCeEec-CCceEEEEEEccc
Confidence 8 5 888765 4566777888754
No 68
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.89 E-value=4.5e-22 Score=187.20 Aligned_cols=264 Identities=17% Similarity=0.147 Sum_probs=177.3
Q ss_pred cCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc
Q 018318 39 SENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL 118 (358)
Q Consensus 39 ~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~ 118 (358)
+.+.+|+.|++++.+.+...++ .+...+..+... .....+.++++++++|++++ ..+++++|++|+..++.++.
T Consensus 9 ~~~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~---~v~~~~g~t~a~~~~~~~~~ 82 (384)
T 1eg5_A 9 ATTRVDDRVLEEMIVFYREKYG--NPNSAHGMGIEA-NLHMEKAREKVAKVLGVSPS---EIFFTSCATESINWILKTVA 82 (384)
T ss_dssp TCCCCCHHHHHHHHHHHHTCCC--CTTCSSHHHHHH-HHHHHHHHHHHHHHHTSCGG---GEEEESCHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHH-HHHHHHHHHHHHHHcCCCCC---eEEEECCHHHHHHHHHHhhh
Confidence 4457799999999988765442 222111111111 12334566899999998753 23445556789999999987
Q ss_pred ----CCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC-
Q 018318 119 ----EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP- 193 (358)
Q Consensus 119 ----~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~- 193 (358)
++||+|++..++|.++.... ..+...|. +++.++.+ .++.+|++++++++++ ++++|++++++++
T Consensus 83 ~~~~~~gd~vl~~~~~~~~~~~~~------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~npt 152 (384)
T 1eg5_A 83 ETFEKRKRTIITTPIEHKAVLETM------KYLSMKGF--KVKYVPVD-SRGVVKLEELEKLVDE-DTFLVSIMAANNEV 152 (384)
T ss_dssp HHTTTTCCEEEECTTSCHHHHHHH------HHHHHTTC--EEEECCBC-TTSCBCHHHHHHHCCT-TEEEEEEESBCTTT
T ss_pred hhccCCCCEEEECCCCchHHHHHH------HHHHhcCC--EEEEEccC-CCCccCHHHHHHHhCC-CCeEEEEECCCCCc
Confidence 79999999998886543211 01133454 44455554 3678999999999975 7888888777655
Q ss_pred -CccchHHHHHHHHHhC--CEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCCCCCCC
Q 018318 194 -RDWDYARFRAVADKCG--ALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQ 267 (358)
Q Consensus 194 -~~~~l~~i~~la~~~g--~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~~~~~~ 267 (358)
...|+++|.++|++|| +++|+|++|+.|.. +.++. ++|++++|+||++ |+.| |+++++++. ++
T Consensus 153 G~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~-----~~~~~~~~~di~~~s~sK~~-g~~G~G~~~~~~~~-~~---- 221 (384)
T 1eg5_A 153 GTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKI-----PFSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGV-PI---- 221 (384)
T ss_dssp CBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTS-----CCCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTS-CC----
T ss_pred ccccCHHHHHHHHHhcCCceEEEEEhhhhcCCc-----ccCchhcCCCEEEecHHHhc-CCCceEEEEEcCCC-cc----
Confidence 5779999999999999 99999999875532 12232 6899999999975 6665 999998753 00
Q ss_pred CCCccccHHHHhhhh--cCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeee
Q 018318 268 PEGAVYDFEDKINFA--VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 338 (358)
Q Consensus 268 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~ 338 (358)
...+... ......++++...++++..+++... +.+++..++..++++++.+.|++.|+++..
T Consensus 222 --------~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 285 (384)
T 1eg5_A 222 --------RPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAV-EELSEAAKHMEKLRSKLVSGLMNLGAHIIT 285 (384)
T ss_dssp --------CCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHTTTCEECS
T ss_pred --------ccccccCcccccccCCCCChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCCCeEEeC
Confidence 0001000 0001123455556666666776543 345778888999999999999988988765
No 69
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.89 E-value=2.1e-22 Score=190.13 Aligned_cols=248 Identities=11% Similarity=0.054 Sum_probs=162.5
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccc
Q 018318 71 GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT 150 (358)
Q Consensus 71 ~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (358)
+.++.+.+ +++++++++++|++. ..++++|||+|+++++. .+++||+|+++.+.|.+.. .. ..+...
T Consensus 30 ~~~~~~~~-~~~~~~l~~~~~~~~----~v~~~~sgt~a~~~~~~-~~~~gd~vi~~~~~~~~~~---~~----~~~~~~ 96 (379)
T 3ke3_A 30 SKAFQEVM-NDLLSNLKTVYNAEA----AVIIPGSGTYGMEAVAR-QLTIDEDCLIIRNGWFSYR---WT----QILEKG 96 (379)
T ss_dssp SHHHHHHH-HHHHHHHHHHHTCSE----EEEEESCHHHHHHHHHH-HHCTTCEEEEEECSHHHHH---HH----HHHHHH
T ss_pred CHHHHHHH-HHHHHHHHHHhCCCC----EEEEcCChhHHHHHHHH-hCCCCCeEEEEeCCchhHH---HH----HHHHHh
Confidence 44555444 467899999999884 33555678889998874 4579999999887554321 00 011223
Q ss_pred cceeEEeecccCC--------CCCCCCHHHHHHHHhhcCCcEEEEcCCC--CCCccc---hHHHHHHHHHhCCEEEEech
Q 018318 151 SIYFESLPYKVNS--------STGYIDYDKLEEKALDFRPKLIICGGSA--YPRDWD---YARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 151 g~~~~~~~~~~~~--------~~~~id~~~l~~~l~~~~~~~v~~~~~~--~~~~~~---l~~i~~la~~~g~~lvvD~a 217 (358)
|...+++.++.+. ..+.+|+++++++++++++++|++.+++ +|...| +++|.++|++||+++++|++
T Consensus 97 g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~ 176 (379)
T 3ke3_A 97 KFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCI 176 (379)
T ss_dssp CCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 3322333333321 0126899999999975578988776543 455677 99999999999999999999
Q ss_pred hhhhhhhccccCCCCC--cccEEEecCCccCCCCCe-eEEEEeCCCCC-CCC---CCCCCccccHHHHhh---hhcCCCC
Q 018318 218 HISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKP-PKK---GQPEGAVYDFEDKIN---FAVFPSL 287 (358)
Q Consensus 218 ~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~-~~~---~~~~~~~~~~~~~~~---~~~~~~~ 287 (358)
|+ |.. +..+. ++|++++|+||+|+||.| |+++++++..+ +.+ .+.......+.+... ....+ .
T Consensus 177 ~~-g~~-----~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 249 (379)
T 3ke3_A 177 AS-GCV-----WLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHA-Y 249 (379)
T ss_dssp TC-TTC-----CCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCC-C
T ss_pred cc-CCc-----cccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCC-C
Confidence 87 631 22333 799999999999988876 88888764211 000 000000000111011 10011 1
Q ss_pred cCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeee
Q 018318 288 QGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 338 (358)
Q Consensus 288 ~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~ 338 (358)
.++++...++++.++++.+.+.+++++.++..++++++++.|++.|+++..
T Consensus 250 ~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~ 300 (379)
T 3ke3_A 250 HATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVA 300 (379)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSB
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 236777888888888888765456888899999999999999999998865
No 70
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.89 E-value=8.9e-22 Score=184.44 Aligned_cols=271 Identities=13% Similarity=0.055 Sum_probs=182.9
Q ss_pred hcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChH
Q 018318 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (358)
Q Consensus 31 ~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~ 108 (358)
++.+.|..+++. +++.|++++.+.+... .+|+.. .. .+++ +++++++|++.++ .+++++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~------~~-~~lr----~~la~~~~~~~~~---v~~~~g~~~ 93 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANKA--HLYPDD------SM-IELK----STLAQKYKVQNEN---IIIGAGSDQ 93 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGGT--TSCCCT------TC-HHHH----HHHHHHHTCCGGG---EEEESSHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHhh--ccCCCC------Ch-HHHH----HHHHHHhCCCcce---EEECCCHHH
Confidence 356777766554 4899999998877532 234332 11 3444 7889999987642 244455567
Q ss_pred HHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEc
Q 018318 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG 188 (358)
Q Consensus 109 a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~ 188 (358)
|+..++.+++++||+|++..+.|.++.. .+...|.. ++.++++.+++ +|+++++++++ .++++|+++
T Consensus 94 a~~~~~~~l~~~gd~vl~~~~~~~~~~~---------~~~~~g~~--~~~v~~~~~~~-~d~~~l~~~l~-~~~~~v~~~ 160 (365)
T 3get_A 94 VIEFAIHSKLNSKNAFLQAGVTFAMYEI---------YAKQCGAK--CYKTQSITHNL-DEFKKLYETHK-DEIKLIFLC 160 (365)
T ss_dssp HHHHHHHHHCCTTCEEEECSSCCTHHHH---------HHHHHTCE--EEECSSSSCCH-HHHHHHHHHTT-TTEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEeCCChHHHHH---------HHHHcCCE--EEEEecCCCCC-CCHHHHHHHhC-CCCCEEEEc
Confidence 9999999999999999999988875431 23345654 44444422467 99999999997 478999887
Q ss_pred CCCCC--CccchHHHHHHHH--HhCCEEEEechhhhhhh--hccccCCCC---C--cccEEEecCCccC--CCCCeeEEE
Q 018318 189 GSAYP--RDWDYARFRAVAD--KCGALLLCDMAHISGLV--AAQEAANPF---E--YCHIVTTTTHKSL--RGPRAGMIF 255 (358)
Q Consensus 189 ~~~~~--~~~~l~~i~~la~--~~g~~lvvD~a~~~g~~--~~~~~~~~~---~--~~d~~~~s~~K~l--~g~~gG~i~ 255 (358)
+++|+ ...|++++.++++ ++|+++|+|++|+.+.. ..+...... + +.+++++|+||++ +|.+.|+++
T Consensus 161 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 240 (365)
T 3get_A 161 LPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGI 240 (365)
T ss_dssp SSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEE
T ss_pred CCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEE
Confidence 77765 5678888888887 67999999999874331 111111111 1 4568899999996 456779999
Q ss_pred EeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCce
Q 018318 256 YRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYS 335 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~ 335 (358)
+++ ++.+.+.....+. +++....+++..+++. ...++...+++.++++++.+.|++.|++
T Consensus 241 ~~~---------------~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 300 (365)
T 3get_A 241 ANA---------------NIISAFYKLRAPF---NVSNLALKAAVAAMDD--DEFTEKTLENNFSQMELYKEFAKKHNIK 300 (365)
T ss_dssp ECH---------------HHHHHHHHHSCTT---CSCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred cCH---------------HHHHHHHHhcCCC---CcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 865 4666665443322 2444444454555542 1345788888999999999999999998
Q ss_pred eeeCCCcceEEEEEcCC
Q 018318 336 LVTGGTENHLVLWDLRP 352 (358)
Q Consensus 336 ~~~~~~~~~~~~v~~~~ 352 (358)
+.. + .+..+|+++..
T Consensus 301 ~~~-~-~~~~~~~~~~~ 315 (365)
T 3get_A 301 IID-S-YTNFITYFFDE 315 (365)
T ss_dssp ECC-C-SSSEEEEECSS
T ss_pred ECC-C-CCeEEEEECCC
Confidence 764 3 34457888753
No 71
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.89 E-value=1.4e-22 Score=196.14 Aligned_cols=240 Identities=11% Similarity=0.140 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccccccCCh-HHHHHHHHhhcC--CCCeEEEecCCCCccccccccccCCccccccc
Q 018318 75 IDEIENLCRSRALQTFHLDPTQWGVNVQPYSGS-PANFAAYTAVLE--PHDRIMGLDLPSGGHLTHGYYTSGGKKISATS 151 (358)
Q Consensus 75 ~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt-~a~~~~l~a~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g 151 (358)
..++++.+++++++++|++.. .+++++|| .++..++.++.. +|+.|+++.++|.+.. ..++..|
T Consensus 131 ~~~~~~~~~~~la~~~g~~~~----~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~---------~~~~~~G 197 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLNVH----AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI---------KAVSFVG 197 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE----EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH---------HHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCCC----EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHH---------HHHHHcC
Confidence 556778899999999999862 25556677 466656666533 6778888888877533 1334567
Q ss_pred ceeEEeecccCCCCCCCCHHHHHHHH-hh---cCCcEEEEcCCC--CCCccchHHHHHHHHHhCCEEEEechhhh---hh
Q 018318 152 IYFESLPYKVNSSTGYIDYDKLEEKA-LD---FRPKLIICGGSA--YPRDWDYARFRAVADKCGALLLCDMAHIS---GL 222 (358)
Q Consensus 152 ~~~~~~~~~~~~~~~~id~~~l~~~l-~~---~~~~~v~~~~~~--~~~~~~l~~i~~la~~~g~~lvvD~a~~~---g~ 222 (358)
.++..+++.-..+++.+|++++++++ ++ .++.+|+++.++ +|.+.|+++|+++|+++|+++++|+||+. |.
T Consensus 198 ~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~ 277 (456)
T 2z67_A 198 MNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYY 277 (456)
T ss_dssp CEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred CCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHh
Confidence 65544443111246789999999999 42 356666666664 45788999999999999999999988653 22
Q ss_pred hhccccCCCCC-cccEEEecCCccCCCCCe-eEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHH
Q 018318 223 VAAQEAANPFE-YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALA 300 (358)
Q Consensus 223 ~~~~~~~~~~~-~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 300 (358)
..... ..+. ++|++++|+||++.+|.| |+++++++ ++.+.+... +. +........++.
T Consensus 278 ~~~~~--~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~--------------~~~~~l~~~-~~---g~~~~~~~~~~~ 337 (456)
T 2z67_A 278 LEKLK--KAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDA--------------EFIKEISLS-YP---GRASATPVVNTL 337 (456)
T ss_dssp HHHHH--HHHTSCCSEEEEEHHHHHCCCSSCEEEEESCH--------------HHHHHHHTT-SC---SCBCSHHHHHHH
T ss_pred hHHHH--HhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCH--------------HHHhhcCcC-CC---CCCCCCHHHHHH
Confidence 21110 0011 689999999999877765 99998653 455544322 11 211112234455
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC----CceeeeCCCcceEEEEEc
Q 018318 301 VALKQASTPAFKAYAKQVKANAVALGNYLTGK----GYSLVTGGTENHLVLWDL 350 (358)
Q Consensus 301 ~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----G~~~~~~~~~~~~~~v~~ 350 (358)
+++..+...+++++.++..++++++.+.|++. |+.+..+ . ..+++++
T Consensus 338 aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~-~--~~v~~~~ 388 (456)
T 2z67_A 338 VSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDV-E--SPIASCI 388 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCC-C--CSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCC-C--CeEEEEE
Confidence 66666554567888999999999999999987 8777642 2 4555555
No 72
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.89 E-value=2.8e-22 Score=194.81 Aligned_cols=264 Identities=11% Similarity=0.001 Sum_probs=171.6
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCCCC------CCccccccCChHHHHHHHHhhc-------------------CCCCeEE
Q 018318 71 GNEFIDEIENLCRSRALQTFHLDPTQ------WGVNVQPYSGSPANFAAYTAVL-------------------EPHDRIM 125 (358)
Q Consensus 71 ~~~~~~~le~~~~~~la~~~g~~~~~------~~~~v~~~sGt~a~~~~l~a~~-------------------~~gd~Vl 125 (358)
..+...++|+.+.+|+++++|.+... .+..+++++||+||..++.+.. .|++.|+
T Consensus 107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi 186 (475)
T 3k40_A 107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY 186 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEE
Confidence 44677899999999999999997521 0123667788999988877652 1346788
Q ss_pred EecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcC-----CcEEEEc--CCCCCCccch
Q 018318 126 GLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFR-----PKLIICG--GSAYPRDWDY 198 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~-----~~~v~~~--~~~~~~~~~l 198 (358)
+...+|.+.. +.+...|.. ++.++++ +++ +|+++|+++|++.+ |.+|++. ++.+|...|+
T Consensus 187 ~s~~~H~s~~---------~~~~~~g~~--~~~v~~d-~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l 253 (475)
T 3k40_A 187 CSDQAHSSVE---------RAGLLGGVK--LRSVQSE-NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYL 253 (475)
T ss_dssp EETTSCHHHH---------HHHHHHTCE--EEEECCB-TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred ECCCchHHHH---------HHHHHcCCc--eEEEECC-CCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCH
Confidence 8888776543 233445654 4445555 367 99999999997642 5555543 3446778899
Q ss_pred HHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---CcccEEEecCCccCCCCCe-eEEEEeCCCC--C-CCCCCCCCc
Q 018318 199 ARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---EYCHIVTTTTHKSLRGPRA-GMIFYRKGPK--P-PKKGQPEGA 271 (358)
Q Consensus 199 ~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~~~d~~~~s~~K~l~g~~g-G~i~~~~~~~--~-~~~~~~~~~ 271 (358)
++|+++|++||+++++|+||+.+....+.....+ ..+|++++++|||+++|.| |+++++++.. + +......+.
T Consensus 254 ~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~ 333 (475)
T 3k40_A 254 DECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLK 333 (475)
T ss_dssp HHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC------------
T ss_pred HHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccC
Confidence 9999999999999999999987655433222212 2579999999999988876 8888876411 1 000000000
Q ss_pred cccHHHH-hhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-CceeeeCCCcceEEEEE
Q 018318 272 VYDFEDK-INFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWD 349 (358)
Q Consensus 272 ~~~~~~~-~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~v~ 349 (358)
...... .+.. ......+.. ....+++++++.+..+++++++++..++++++++.|++. ||++.. +....++++.
T Consensus 334 -~~~~~~~~~~~-~~~~~~sr~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~-~~~~~iv~f~ 409 (475)
T 3k40_A 334 -HDMQGSAPDYR-HWQIPLGRR-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAA-EINMGLVCFR 409 (475)
T ss_dssp -----------------CCCGG-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESS-CCBTTEEEEE
T ss_pred -CCcCCCCCCcc-cccccCCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec-CCceEEEEEE
Confidence 000000 0000 001111211 234556777777666678899999999999999999997 999876 3456677776
Q ss_pred cC
Q 018318 350 LR 351 (358)
Q Consensus 350 ~~ 351 (358)
+.
T Consensus 410 ~~ 411 (475)
T 3k40_A 410 LK 411 (475)
T ss_dssp ES
T ss_pred eC
Confidence 54
No 73
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.89 E-value=5.2e-23 Score=193.10 Aligned_cols=270 Identities=10% Similarity=0.052 Sum_probs=181.7
Q ss_pred ccCCCCCHHHHHHHhcccccCCCCCCCC-CCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccc-cCChHHHHHHHH
Q 018318 38 ASENFTSFAVIEALGSALTNKYSEGMPG-NRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQP-YSGSPANFAAYT 115 (358)
Q Consensus 38 a~~~~~~~~V~~a~~~~~~~~~~~g~~~-~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~-~sGt~a~~~~l~ 115 (358)
+...++|++|+++|..++.+.++.+... ..+..+.++.+.+| ++|+.+++++|+++++ -.+++ .+||+++.+++.
T Consensus 19 at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~-~ar~~la~ll~~~~~~--evif~t~~~T~a~n~a~~ 95 (377)
T 3e77_A 19 YFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIIN-NTENLVRELLAVPDNY--KVIFLQGGGCGQFSAVPL 95 (377)
T ss_dssp ECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHH-HHHHHHHHHHTCCTTE--EEEEESSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCC--eEEEEcCchHHHHHHHHH
Confidence 3566789999999999887655322111 11223456666665 7899999999997521 12432 467889999999
Q ss_pred hhcCC--CCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCC--
Q 018318 116 AVLEP--HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA-- 191 (358)
Q Consensus 116 a~~~~--gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~-- 191 (358)
+++++ ||+|++.... ++++... ..++..|. .+..++.+ .++..+++.++.++.+ ++++|++++.+
T Consensus 96 ~l~~~~~Gd~v~~~~~g---~~~~~~~----~~a~~~G~--~~~~~~~~-~~~~~~~~~~~~~i~~-~t~lV~~~h~et~ 164 (377)
T 3e77_A 96 NLIGLKAGRCADYVVTG---AWSAKAA----EEAKKFGT--INIVHPKL-GSYTKIPDPSTWNLNP-DASYVYYCANETV 164 (377)
T ss_dssp HHGGGSTTCEEEECCCS---HHHHHHH----HHHTTTSE--EEECSCCC-SSSCSCCCGGGCCCCT-TCSCEEEESEETT
T ss_pred hccCCCCCCeEEEEECC---HHHHHHH----HHHHHhCC--ceEEeccC-CCcCCCCChHHhccCC-CccEEEEeCccCc
Confidence 98765 9999876643 2222211 11233454 33334443 2445677777666653 68888776544
Q ss_pred CCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCCe-eEEEEeCCCCC-CCCCCCC
Q 018318 192 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA-GMIFYRKGPKP-PKKGQPE 269 (358)
Q Consensus 192 ~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~-~~~~~~~ 269 (358)
+|...|+ +|+++|+++++|++|+.|.. +.+++..|++++|+||++ ||.| |+++.+++..+ +.+..+.
T Consensus 165 tG~~~pi-----i~~~~~~~~~vD~~q~~g~~-----~id~~~~~~~~~s~~K~~-gp~G~g~l~~~~~~l~~~~~~~p~ 233 (377)
T 3e77_A 165 HGVEFDF-----IPDVKGAVLVCDMSSNFLSK-----PVDVSKFGVIFAGAQKNV-GSAGVTVVIVRDDLLGFALRECPS 233 (377)
T ss_dssp TTEECSS-----CCCCTTCCEEEECTTTTTSS-----CCCGGGCSEEEEEGGGTT-SCTTCEEEEEETTSCSCCCTTSCG
T ss_pred hheEchh-----hhccCCCEEEEEcccccCCC-----CCchhhcCEEEEeccccc-CCCccEEEEEcHHHHhhccCCCCc
Confidence 4777887 47889999999999998854 234445568999999998 7998 99999887543 2221111
Q ss_pred CccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHhhC-Cceee
Q 018318 270 GAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP-AFKAYAKQVKANAVALGNYLTGK-GYSLV 337 (358)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-G~~~~ 337 (358)
+ .++....+. ....++|+...++++.+|++.+.+. +++.+.++..++++++++.|++. |+.+.
T Consensus 234 ~--~~~~~~~~~---~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~ 298 (377)
T 3e77_A 234 V--LEYKVQAGN---SSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVC 298 (377)
T ss_dssp G--GCHHHHHTT---TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEEC
T ss_pred h--hhHHHHhhc---CCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceec
Confidence 1 122222221 1224678889999999999988766 68999999999999999999998 88764
No 74
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.89 E-value=4.2e-22 Score=187.08 Aligned_cols=296 Identities=14% Similarity=0.046 Sum_probs=187.2
Q ss_pred hcccccccchHHHHHHHHHHHH----hhcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHH
Q 018318 8 GNSSLETVDPEIHDLIEKEKRR----QCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENL 81 (358)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~ 81 (358)
.+++++.++++.+..+.+.... .++.+.+..+.+. .++.+.+++.+.+.... .+|+. .....++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~------~~~~~~l~~~ 74 (370)
T 2z61_A 2 LSKRLLNFESFEVMDILALAQKLESEGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGK-THYTD------SRGILELREK 74 (370)
T ss_dssp CCHHHHHCCCCTTHHHHHHHHHHHHTTCCCEECCCCSCSSCCCHHHHHHHHHHHHTTC-CSCCC------TTCCHHHHHH
T ss_pred hhhhhhhccccHHHHHHHHHHHHHhcCCCEEEccCCCCCCCCCHHHHHHHHHHHHcCc-cCCCC------CCCCHHHHHH
Confidence 3455555666544444333222 2345677666543 47899999887764321 12322 1223466655
Q ss_pred HHHHHHHhcCCC--CCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeec
Q 018318 82 CRSRALQTFHLD--PTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPY 159 (358)
Q Consensus 82 ~~~~la~~~g~~--~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 159 (358)
+.+++.+.+|.+ ++ ..+++++|++|+..++.+++++||+|++..+.|.++.. .+...|. +++.+
T Consensus 75 la~~~~~~~g~~~~~~---~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g~--~~~~v 140 (370)
T 2z61_A 75 ISELYKDKYKADIIPD---NIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKN---------FIRFLGA--KPVFC 140 (370)
T ss_dssp HHHHHHHHSSCCCCGG---GEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH---------HHHHTTC--EEEEE
T ss_pred HHHHHHHHhCCCCChh---hEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH---------HHHHcCC--EEEEe
Confidence 666666666643 32 23444556789999999999999999999998876531 2234554 34444
Q ss_pred ccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCC---
Q 018318 160 KVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPF--- 232 (358)
Q Consensus 160 ~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~--- 232 (358)
+ +|++++++++++ ++++|++++++|+ ...|++ |.++|++||+++|+|++|+.+. ..+... ..+
T Consensus 141 ~-------~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~-~~g~~~~~~~~~~~ 210 (370)
T 2z61_A 141 D-------FTVESLEEALSD-KTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLV-YEGKCYSAIEFDEN 210 (370)
T ss_dssp C-------SSHHHHHHHCCS-SEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCB-SSSCCCCGGGTCTT
T ss_pred C-------CCHHHHHHhccc-CceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcc-cCCCCcCHHHccCC
Confidence 2 789999999865 6888888777664 577888 9999999999999999987543 222111 111
Q ss_pred CcccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHH
Q 018318 233 EYCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPA 310 (358)
Q Consensus 233 ~~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~ 310 (358)
.+.|++++|+||+++ |.+.|++++++ ++.+.+........ .+++....+++..+++......
T Consensus 211 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~ 274 (370)
T 2z61_A 211 LEKTILINGFSKLYAMTGWRIGYVISND---------------EIIEAILKLQQNLF-ISAPTISQYAALKAFEKETERE 274 (370)
T ss_dssp CSSEEEEEESTTTTTCGGGCCEEEECCH---------------HHHHHHHHHHHHHT-SSSCHHHHHHHGGGGSHHHHHH
T ss_pred CCcEEEEecChhccCCccceEEEEEECH---------------HHHHHHHHHHhhcc-cCCCHHHHHHHHHHHhccCHHH
Confidence 156899999999983 44569999877 35554443221111 1233344444344443211223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 311 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
++...+++.++++++.+.|++.|+++.. +..++.+|+++.
T Consensus 275 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~ 314 (370)
T 2z61_A 275 INSMIKEFDRRRRLVLKYVKDFGWEVNN-PIGAYYVFPNIG 314 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCBCCC-CCBTTEECCBCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeecC-CCcceEEEEecC
Confidence 4667788899999999999988988764 345666777653
No 75
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.89 E-value=1.1e-21 Score=186.14 Aligned_cols=271 Identities=16% Similarity=0.173 Sum_probs=179.6
Q ss_pred eeEeccCC--C-CCHHHHHHHhcccccCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHH
Q 018318 34 IELIASEN--F-TSFAVIEALGSALTNKYSEGMPGNRYYGGN-EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPA 109 (358)
Q Consensus 34 ~~l~a~~~--~-~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~-~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a 109 (358)
+.+..++. . .++.+.+++.+.+... ..++.+.++..|. +.. +++++++++++|.+. .+++++|++|
T Consensus 46 idl~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~g~~~~~----~~l~~~la~~~g~~~-----v~~~~ggt~a 115 (398)
T 3a2b_A 46 LMFGSNSYLGLTTDTRIIKAAQDALEKY-GTGCAGSRFLNGTLDIH----VELEEKLSAYVGKEA-----AILFSTGFQS 115 (398)
T ss_dssp EECSCSCTTCGGGCHHHHHHHHHHHHHH-CSCCCSBTTTTCCCHHH----HHHHHHHHHHHTCSE-----EEEESSHHHH
T ss_pred EEeecccccCCCCCHHHHHHHHHHHHHc-CCCCCCcCcccCCcHHH----HHHHHHHHHHhCCCc-----EEEECCHHHH
Confidence 44444433 2 6789999988776432 1222221122222 333 345588999999753 3666778899
Q ss_pred HHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhc---CCcEEE
Q 018318 110 NFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF---RPKLII 186 (358)
Q Consensus 110 ~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~---~~~~v~ 186 (358)
+..++.++++|||+|++..+.|+++.. .+...|.. ++.++ .+|++++++++++. ++++|+
T Consensus 116 ~~~~~~~~~~~gd~V~~~~p~~~~~~~---------~~~~~g~~--~~~v~------~~d~~~l~~~l~~~~~~~~~~v~ 178 (398)
T 3a2b_A 116 NLGPLSCLMGRNDYILLDERDHASIID---------GSRLSFSK--VIKYG------HNNMEDLRAKLSRLPEDSAKLIC 178 (398)
T ss_dssp HHHHHHHSSCTTCEEEEETTCCHHHHH---------HHHHSSSE--EEEEC------TTCHHHHHHHHHTSCSSSCEEEE
T ss_pred HHHHHHHHhCCCCEEEECCccCHHHHH---------HHHHcCCc--eEEeC------CCCHHHHHHHHHhhccCCceEEE
Confidence 999999999999999999998876531 23445653 44443 26899999999764 678888
Q ss_pred EcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCC----CCC-cccEEEecCCccCCCCCeeEEEEeCC
Q 018318 187 CGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAAN----PFE-YCHIVTTTTHKSLRGPRAGMIFYRKG 259 (358)
Q Consensus 187 ~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~----~~~-~~d~~~~s~~K~l~g~~gG~i~~~~~ 259 (358)
+++++++ ...|+++|.++|++||+++|+|++|+.+......... .+. ++|++++|+||+++ |.||++++++
T Consensus 179 ~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~- 256 (398)
T 3a2b_A 179 TDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLGGFVAGDA- 256 (398)
T ss_dssp EESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSCEEEEECH-
T ss_pred EeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCCcEEEeCH-
Confidence 8877654 5779999999999999999999998766432110100 111 36999999999985 6779999876
Q ss_pred CCCCCCCCCCCccccHHHHhhhhcCC-CCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeee
Q 018318 260 PKPPKKGQPEGAVYDFEDKINFAVFP-SLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 338 (358)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~ 338 (358)
++.+.+...... ...++++....+++..+++.. ...+..++++.++++++.+.|++.|+++..
T Consensus 257 --------------~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 320 (398)
T 3a2b_A 257 --------------DVIDFLKHNARSVMFSASMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDHGFDLGA 320 (398)
T ss_dssp --------------HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHTTCCBCS
T ss_pred --------------HHHHHHHHhcccceecCCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 455544432111 111223333333344555543 223567788899999999999998988764
Q ss_pred CCCcceEEEEEcC
Q 018318 339 GGTENHLVLWDLR 351 (358)
Q Consensus 339 ~~~~~~~~~v~~~ 351 (358)
..++.+|+.+.
T Consensus 321 --~~g~~~~~~~~ 331 (398)
T 3a2b_A 321 --TESPILPIFIR 331 (398)
T ss_dssp --CCSSEEEEECC
T ss_pred --CCCCEEEEEcC
Confidence 24678888863
No 76
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.89 E-value=1.7e-21 Score=191.27 Aligned_cols=248 Identities=12% Similarity=0.045 Sum_probs=174.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCC--CCCCccccccCChHHHHHHHHhhcCCC--------CeEEEecCCCCcccccccccc
Q 018318 73 EFIDEIENLCRSRALQTFHLDP--TQWGVNVQPYSGSPANFAAYTAVLEPH--------DRIMGLDLPSGGHLTHGYYTS 142 (358)
Q Consensus 73 ~~~~~le~~~~~~la~~~g~~~--~~~~~~v~~~sGt~a~~~~l~a~~~~g--------d~Vl~~~~~~~~~~~~~~~~~ 142 (358)
+....+|+.+++++++++|++. +.+ ..+++++|++|+..++.++.++| |+|++..+.|.++.
T Consensus 135 p~~~~le~~l~~~la~~~g~~~~~~~v-~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~------- 206 (514)
T 3mad_A 135 PSTAKFEAEVVAMTAHMLGGDAAGGTV-CGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFD------- 206 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGGTSCC-EEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHH-------
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccCCc-ceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHH-------
Confidence 5566788888899999999883 211 11556667889999999987766 99999999887643
Q ss_pred CCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCC--CCccchHHHHHHHHHhCCEEEEechhhh
Q 018318 143 GGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAY--PRDWDYARFRAVADKCGALLLCDMAHIS 220 (358)
Q Consensus 143 ~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~--~~~~~l~~i~~la~~~g~~lvvD~a~~~ 220 (358)
..+...|.++ +.++++. ++.+|+++|++++++ ++++|+++++++ |...|+++|.++|++||+++|+|++|+.
T Consensus 207 --~~~~~~G~~v--~~v~~~~-~~~~d~~~Le~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~ 280 (514)
T 3mad_A 207 --KAAQYFGIKL--VRTPLDA-DYRADVAAMREAITP-NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGG 280 (514)
T ss_dssp --HHHHHHTCEE--EEECBCT-TSCBCHHHHHHHCCT-TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTT
T ss_pred --HHHHHcCCee--EEeeeCC-CCCCCHHHHHHHhcc-CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEeccccc
Confidence 1234456554 4445453 788999999999975 788888887765 4678999999999999999999999875
Q ss_pred hhhh----ccc--cCCCC--CcccEEEecCCccCCCCC-eeEEEEeCCCCCCCCCCCCCccccHHHHhh---------hh
Q 018318 221 GLVA----AQE--AANPF--EYCHIVTTTTHKSLRGPR-AGMIFYRKGPKPPKKGQPEGAVYDFEDKIN---------FA 282 (358)
Q Consensus 221 g~~~----~~~--~~~~~--~~~d~~~~s~~K~l~g~~-gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 282 (358)
+... .+. ..... .++|++++|+||++.++. .|+++++++ .+..... ..
T Consensus 281 ~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 346 (514)
T 3mad_A 281 FILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRP--------------DLLHYQYFIAADWPGGLY 346 (514)
T ss_dssp TTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSH--------------HHHTTTCEEESSCTTCSE
T ss_pred ccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCH--------------HHhccccccccccCCCcc
Confidence 4331 111 01112 278999999999976654 488888774 1111100 00
Q ss_pred cCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-CceeeeCCCcceEEEEEc
Q 018318 283 VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWDL 350 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~v~~ 350 (358)
..+...+++....++++++++..+...++++..++..++++++++.|++. |+++..++ ..++++..
T Consensus 347 ~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~ 413 (514)
T 3mad_A 347 FSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP--LWVIAVAS 413 (514)
T ss_dssp EESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--SSEEEEEC
T ss_pred cCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--eEEEEEeC
Confidence 01222445555556677778777655567888999999999999999997 88887532 44666654
No 77
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.9e-22 Score=193.63 Aligned_cols=274 Identities=14% Similarity=0.122 Sum_probs=182.0
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCC-CCCCCccccccCChHHHHHHHHhhcC---
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD-PTQWGVNVQPYSGSPANFAAYTAVLE--- 119 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~v~~~sGt~a~~~~l~a~~~--- 119 (358)
++.+.+++.+.+.... ..++. .+...+...++|+++++++++++|++ ..+ ..+++++|++|+..++.++++
T Consensus 77 ~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~l~~~~~~~la~~~g~~~~~~--~~~~~~ggt~a~~~a~~a~~~~~~ 151 (497)
T 3mc6_A 77 GDDLIHLQTIAYEKYC-VANQL--HPDVFPAVRKMESEVVSMVLRMFNAPSDTG--CGTTTSGGTESLLLACLSAKMYAL 151 (497)
T ss_dssp CHHHHHHHHHHHHHTS-SCBTT--CTTTCHHHHHHHHHHHHHHHHHTTCCTTTC--CEEEESSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHh-hcCCC--CcccChHHHHHHHHHHHHHHHHhCCCCCCC--eEEEcCcHHHHHHHHHHHHHHHHH
Confidence 4666666655543321 11111 12233556788888999999999998 221 235556677899999988754
Q ss_pred --CC---CeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCC--
Q 018318 120 --PH---DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAY-- 192 (358)
Q Consensus 120 --~g---d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~-- 192 (358)
+| |+|+++.+.|.++. ..+...|..+. .++.+.+++.+|++++++++++ ++++|+++++++
T Consensus 152 ~~~g~~~~~Vi~~~~~h~~~~---------~~~~~~G~~~~--~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~npt 219 (497)
T 3mc6_A 152 HHRGITEPEIIAPVTAHAGFD---------KAAYYFGMKLR--HVELDPTTYQVDLGKVKKFINK-NTVLLVGSAPNFPH 219 (497)
T ss_dssp HHSCCSSCEEEEETTSCHHHH---------HHHHHSCCEEE--EECBCTTTCSBCTTTTGGGCCS-SEEEEEEETTCTTT
T ss_pred hcCCCCCceEEEeCCccHHHH---------HHHHHcCCeEE--EEecCcccCcCCHHHHHHHHhh-CCEEEEEECCCCCC
Confidence 56 89999998876543 13345676544 4444433678999999999975 688888887764
Q ss_pred CCccchHHHHHHHHHhCCEEEEechhhhhhhh------cccc-CCCC--CcccEEEecCCccCCCCCe-eEEEEeCCCCC
Q 018318 193 PRDWDYARFRAVADKCGALLLCDMAHISGLVA------AQEA-ANPF--EYCHIVTTTTHKSLRGPRA-GMIFYRKGPKP 262 (358)
Q Consensus 193 ~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~------~~~~-~~~~--~~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~ 262 (358)
|...|+++|.++|++||+++|+|++|+.+... .+.. +..+ .++|++++++||++.++.+ |+++++++
T Consensus 220 G~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~--- 296 (497)
T 3mc6_A 220 GIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNS--- 296 (497)
T ss_dssp CCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSH---
T ss_pred CcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCH---
Confidence 46789999999999999999999998754332 0111 1112 2789999999999766654 88888774
Q ss_pred CCCCCCCCccccHHHHh---hhh------cCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-
Q 018318 263 PKKGQPEGAVYDFEDKI---NFA------VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK- 332 (358)
Q Consensus 263 ~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 332 (358)
.+.... ... ..+...++.....++++++++..+...++.++.++..++++++++.|.+.
T Consensus 297 -----------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~ 365 (497)
T 3mc6_A 297 -----------DLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENI 365 (497)
T ss_dssp -----------HHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred -----------HHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 111110 000 01112233344446677788877765667888999999999999999995
Q ss_pred -CceeeeCCCcceEEEEE
Q 018318 333 -GYSLVTGGTENHLVLWD 349 (358)
Q Consensus 333 -G~~~~~~~~~~~~~~v~ 349 (358)
|++++.+ ....++.+.
T Consensus 366 ~g~~~~~~-~~~~~v~~~ 382 (497)
T 3mc6_A 366 PDLDIMGN-PRYSVISFS 382 (497)
T ss_dssp TTCEECSC-CCSSEEEEE
T ss_pred CCEEEecC-CCeeEEEEe
Confidence 8998753 333344444
No 78
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.88 E-value=8.8e-22 Score=187.27 Aligned_cols=309 Identities=13% Similarity=0.041 Sum_probs=196.2
Q ss_pred cccccccchHHHHHHHHHHHHhhcceeEeccCC--CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 018318 9 NSSLETVDPEIHDLIEKEKRRQCRGIELIASEN--FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRA 86 (358)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~--~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~l 86 (358)
+++++.++++.+..+.+. ....+.+.|..+.. .+++.|.+++.+.+......+|+.. ....++++.+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~l~~~la~~~ 74 (410)
T 3e2y_A 2 AKRIEGLDSNVWVEFTKL-AADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRG------FGHPALVKALSCLY 74 (410)
T ss_dssp CGGGTTCCCCHHHHTTTT-TTSTTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCT------TCCHHHHHHHHHHH
T ss_pred chhhccCCccHHHHHHHH-hcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCC------CChHHHHHHHHHHH
Confidence 356667777766655432 11235566665543 3589999999887754211233321 11235555555667
Q ss_pred HHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccC----
Q 018318 87 LQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN---- 162 (358)
Q Consensus 87 a~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---- 162 (358)
.+.+|.+.+.-...+++++|++|+..++.+++++||+|++..+.|.++.. .+...|..+..++++..
T Consensus 75 ~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g~~~~~~~~~~~~~~g 145 (410)
T 3e2y_A 75 GKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEP---------MVRMAGAVPVFIPLRSKPTDG 145 (410)
T ss_dssp HHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTCEEEEEECEECCCCS
T ss_pred HHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH---------HHHHcCCEEEEEecccccccc
Confidence 76666542100012444455689999999999999999999998876431 23345654444444310
Q ss_pred ----CCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Cc---cchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC
Q 018318 163 ----SSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RD---WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE 233 (358)
Q Consensus 163 ----~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~---~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~ 233 (358)
..++.+|++++++++++ ++++|++++++|+ .. .++++|.++|++||+++|+|++|+ ++.+.+....++.
T Consensus 146 ~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~ 223 (410)
T 3e2y_A 146 MKWTSSDWTFDPRELESKFSS-KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYE-WLVYTGHTHVKIA 223 (410)
T ss_dssp SCCBGGGEECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGG
T ss_pred ccccccCCcCCHHHHHhhcCC-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhh-hcccCCCCCCCHH
Confidence 12456899999998864 7888888877766 33 479999999999999999999976 3333222111221
Q ss_pred ------cccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHH
Q 018318 234 ------YCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQ 305 (358)
Q Consensus 234 ------~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~ 305 (358)
+.++++.|++|+++ |.+.|++++++ ++.+.+........ .+.+....+++..++..
T Consensus 224 ~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~ 287 (410)
T 3e2y_A 224 TLPGMWERTITIGSAGKTFSVTGWKLGWSIGPA---------------HLIKHLQTVQQNSF-YTCATPLQAALAEAFWI 287 (410)
T ss_dssp GSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCH---------------HHHHHHHHHHHTTT-CCCCHHHHHHHHHHHHH
T ss_pred HcCCccCeEEEEecchhhcCCCCceEEEEEECH---------------HHHHHHHHHHHhhc-cCCChHHHHHHHHHHHh
Confidence 34488999999874 55679998877 34444443222111 12344444444555543
Q ss_pred ------hccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcCC
Q 018318 306 ------ASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 306 ------~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~~ 352 (358)
.....++...+++.++++++.+.|++.|+++.. +..++.+|+++..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~ 339 (410)
T 3e2y_A 288 DIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIV-PDGGYFIIADVSS 339 (410)
T ss_dssp HHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEB-CSBSSEEEEECGG
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecC-CCccEEEEEEchh
Confidence 112345777888899999999999999998765 5678889999864
No 79
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.88 E-value=2.1e-21 Score=183.39 Aligned_cols=281 Identities=12% Similarity=0.005 Sum_probs=181.0
Q ss_pred hcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCcccccc-CCh
Q 018318 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPY-SGS 107 (358)
Q Consensus 31 ~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~-sGt 107 (358)
++.+.+..+... .++.+.+++.+.+.... .+|+. .....++++.+.+++.+.+|++.+. ..++++ +|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~------~~g~~~l~~~la~~~~~~~g~~~~~--~~v~~~~g~~ 100 (388)
T 1j32_A 30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQGK-TRYGP------AAGEPRLREAIAQKLQRDNGLCYGA--DNILVTNGGK 100 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCC------TTCCHHHHHHHHHHHHHHHCCCCCG--GGEEEESHHH
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCCHHHHHHHHHHHHHhcCCCCCh--hhEEEcCCHH
Confidence 356777766543 47899999887764321 12322 1223466666667777777863210 124444 457
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCC-CCCCCCHHHHHHHHhhcCCcEEE
Q 018318 108 PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS-STGYIDYDKLEEKALDFRPKLII 186 (358)
Q Consensus 108 ~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~l~~~~~~~v~ 186 (358)
+|+..++.+++++||+|++..+.|.++.. .++..|..+ +.++.+. .++.+|++++++++++ ++++|+
T Consensus 101 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g~~~--~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~ 168 (388)
T 1j32_A 101 QSIFNLMLAMIEPGDEVIIPAPFWVSYPE---------MVKLAEGTP--VILPTTVETQFKVSPEQIRQAITP-KTKLLV 168 (388)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHH---------HHHHTTCEE--EEECCCGGGTTCCCHHHHHHHCCT-TEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCChhHHH---------HHHHcCCEE--EEecCCcccCCCCCHHHHHHhcCc-CceEEE
Confidence 89999999999999999999998876431 234456544 3444332 2467999999999975 688888
Q ss_pred EcCCCCC--Cc---cchHHHHHHHHHhCCEEEEechhhhhhhhccccCCC---CC----cccEEEecCCccCC--CCCee
Q 018318 187 CGGSAYP--RD---WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANP---FE----YCHIVTTTTHKSLR--GPRAG 252 (358)
Q Consensus 187 ~~~~~~~--~~---~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~---~~----~~d~~~~s~~K~l~--g~~gG 252 (358)
+++++|+ .. .++++|.++|++||+++|+|++|+.+ ...+....+ +. +.|++++|+||+++ |.+.|
T Consensus 169 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G 247 (388)
T 1j32_A 169 FNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKI-LYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVG 247 (388)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC-BCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCE
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCCCHHHccccccCCEEEEeechhccCCcccceE
Confidence 7777665 33 35899999999999999999997643 222211111 11 46899999999973 45679
Q ss_pred EEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 018318 253 MIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (358)
Q Consensus 253 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (358)
++++++ ++.+.+.........+ ++.....+...++.. ....+++..+++.++++++.+.|++.
T Consensus 248 ~~~~~~---------------~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~ 310 (388)
T 1j32_A 248 FLAGPV---------------PLVKAATKIQGHSTSN-VCTFAQYGAIAAYEN-SQDCVQEMLAAFAERRRYMLDALNAM 310 (388)
T ss_dssp EEECCH---------------HHHHHHHHHHHTTTCS-CCHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEeCH---------------HHHHHHHHHHhhcccC-CCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999876 3545444322222122 222223333334432 23345777888999999999999987
Q ss_pred -CceeeeCCCcceEEEEEcC
Q 018318 333 -GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 333 -G~~~~~~~~~~~~~~v~~~ 351 (358)
|+++.. +..+..+|+++.
T Consensus 311 ~g~~~~~-~~~~~~~~~~~~ 329 (388)
T 1j32_A 311 PGLECPK-PDGAFYMFPSIA 329 (388)
T ss_dssp TTCBCCC-CCBTTEECCBCG
T ss_pred CCCcccC-CCeeEEEEEecC
Confidence 888765 345566777764
No 80
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.88 E-value=1.6e-21 Score=184.93 Aligned_cols=263 Identities=14% Similarity=0.130 Sum_probs=172.2
Q ss_pred CCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh-cC
Q 018318 41 NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV-LE 119 (358)
Q Consensus 41 ~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~-~~ 119 (358)
..+++++++++.+.+...|. .. .| +...+++ +.+++++|.+. .+++++|++|+..++.++ ++
T Consensus 8 p~~~~~v~~a~~~~~~~~~~----~~---~g-~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~~~~~~l~~~ 70 (394)
T 1o69_A 8 PHMGGNELKYIEEVFKSNYI----AP---LG-EFVNRFE----QSVKDYSKSEN-----ALALNSATAALHLALRVAGVK 70 (394)
T ss_dssp ----CCHHHHHHHHHHHTTT----SC---TT-HHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHcCCc----cC---CC-hHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcCCC
Confidence 34567888888777654331 10 12 3344554 78899999853 366677788999999999 99
Q ss_pred CCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhc--CCcEEEEcCCCCCCccc
Q 018318 120 PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF--RPKLIICGGSAYPRDWD 197 (358)
Q Consensus 120 ~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~--~~~~v~~~~~~~~~~~~ 197 (358)
+||+|+++.++|.++.. .+...|.. ++.++++ +++.+|++++++++++. ++++|++++ .+|...+
T Consensus 71 ~gd~Vl~~~~~~~~~~~---------~~~~~g~~--~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~v~~~~-~~G~~~~ 137 (394)
T 1o69_A 71 QDDIVLASSFTFIASVA---------PICYLKAK--PVFIDCD-ETYNIDVDLLKLAIKECEKKPKALILTH-LYGNAAK 137 (394)
T ss_dssp TTCEEEEESSSCGGGTH---------HHHHTTCE--EEEECBC-TTSSBCHHHHHHHHHHCSSCCCEEEEEC-GGGCCCC
T ss_pred CCCEEEECCCccHHHHH---------HHHHcCCE--EEEEEeC-CCCCcCHHHHHHHHhcccCCceEEEEEC-CCCChhh
Confidence 99999999998876531 23345654 4445555 46789999999999754 588888875 4667789
Q ss_pred hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCCeeEEEEeCCCCCCCCCCCCCccccHHH
Q 018318 198 YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFED 277 (358)
Q Consensus 198 l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~ 277 (358)
+++|.++|+++|+++|+|++|+.|+.+.+.....+..+|+.++|.+|.++|+++|+++++++ ++.+
T Consensus 138 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~--------------~l~~ 203 (394)
T 1o69_A 138 MDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNK--------------EKIE 203 (394)
T ss_dssp HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCH--------------HHHH
T ss_pred HHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCH--------------HHHH
Confidence 99999999999999999999987765433211122367888999999998778899999643 4444
Q ss_pred HhhhhcCCCCcCCC-----------ChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCC---cc
Q 018318 278 KINFAVFPSLQGGP-----------HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGT---EN 343 (358)
Q Consensus 278 ~~~~~~~~~~~~~~-----------~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~---~~ 343 (358)
.+......+....+ ....+.+ ++++..+ +.+++.+++.+++++++.+.|.+. +++..... .+
T Consensus 204 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a-a~~l~~l--~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~ 279 (394)
T 1o69_A 204 KARFYSTQARENCLHYEHLDYGYNYRLSNVLG-AIGVAQM--EVLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSN 279 (394)
T ss_dssp HHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHH-HHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECC
T ss_pred HHHHHHHhccccCccccccccCcccCcCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcce
Confidence 44332111100000 0111221 2222222 134567888999999999999988 76654211 12
Q ss_pred -eEEEEEcC
Q 018318 344 -HLVLWDLR 351 (358)
Q Consensus 344 -~~~~v~~~ 351 (358)
+++++.+.
T Consensus 280 ~~~~~i~~~ 288 (394)
T 1o69_A 280 RWLSTALIN 288 (394)
T ss_dssp CSSEEEEES
T ss_pred eEEEEEEec
Confidence 35666654
No 81
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.88 E-value=2.4e-21 Score=189.76 Aligned_cols=239 Identities=16% Similarity=0.102 Sum_probs=160.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCC-CCCCccccccCChHHHHHHHHhhcC--------CC-----C-eEEEecCCCCccccc
Q 018318 73 EFIDEIENLCRSRALQTFHLDP-TQWGVNVQPYSGSPANFAAYTAVLE--------PH-----D-RIMGLDLPSGGHLTH 137 (358)
Q Consensus 73 ~~~~~le~~~~~~la~~~g~~~-~~~~~~v~~~sGt~a~~~~l~a~~~--------~g-----d-~Vl~~~~~~~~~~~~ 137 (358)
+...++|+.+++++++++|++. .. ..+++++||+|+..++.++.. +| + .|+++.+.|.++.
T Consensus 128 ~~~~~le~~~~~~la~~~g~~~~~~--~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~-- 203 (504)
T 2okj_A 128 PVFVLMEQITLKKMREIVGWSSKDG--DGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK-- 203 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSSSC--EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH--
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCCC--CEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHH--
Confidence 5667899988999999999973 11 235556778899998887742 56 6 6778777776543
Q ss_pred cccccCCccccccccee-EEeecccCCCCCCCCHHHHHHHHhhc-----CCcEEEEcCCC--CCCccchHHHHHHHHHhC
Q 018318 138 GYYTSGGKKISATSIYF-ESLPYKVNSSTGYIDYDKLEEKALDF-----RPKLIICGGSA--YPRDWDYARFRAVADKCG 209 (358)
Q Consensus 138 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~id~~~l~~~l~~~-----~~~~v~~~~~~--~~~~~~l~~i~~la~~~g 209 (358)
+.+...|.+. .++.++.+ +++.+|+++|++++++. +|++|+++.++ +|...|+++|+++|++||
T Consensus 204 -------~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g 275 (504)
T 2okj_A 204 -------KAGAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN 275 (504)
T ss_dssp -------HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred -------HHHHHcCCCcccEEEEecC-CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcC
Confidence 1223344322 33444544 36899999999999753 47888776554 456789999999999999
Q ss_pred CEEEEechhhhhhhhccccCCCC---CcccEEEecCCccCCCCCe-eEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCC
Q 018318 210 ALLLCDMAHISGLVAAQEAANPF---EYCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFP 285 (358)
Q Consensus 210 ~~lvvD~a~~~g~~~~~~~~~~~---~~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (358)
+++++|++|+.+....+.+...+ .++|++++++||++++|.+ |+++++++ ++.+.......+
T Consensus 276 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~--------------~~~~~~~~~~~~ 341 (504)
T 2okj_A 276 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK--------------GILQGCNQMCAG 341 (504)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST--------------THHHHHHCCCCS
T ss_pred CEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECH--------------HHHHHHhcCCCc
Confidence 99999999887665432221122 2789999999999987764 99998774 121110000000
Q ss_pred CC------------------cCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-Cceeee
Q 018318 286 SL------------------QGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVT 338 (358)
Q Consensus 286 ~~------------------~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~ 338 (358)
++ +.+.... ..+++++++.+..++++++.++..++++++.+.|++. |+++..
T Consensus 342 ~l~~~~~~~~~~~~~~~~~~~~~rr~~-~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 412 (504)
T 2okj_A 342 YLFQPDKQYDVSYDTGDKAIQCGRHVD-IFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVF 412 (504)
T ss_dssp SSCCSCCSSCGGGCCGGGSSCSSCBCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESS
T ss_pred cccCCcccccCcCCcccCCCCCCCCcc-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 00 1111111 2233444555444567888999999999999999986 899875
No 82
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.88 E-value=4.1e-21 Score=183.97 Aligned_cols=304 Identities=12% Similarity=0.059 Sum_probs=197.9
Q ss_pred cccccccchHHHHHHHHHHHHhhcceeEeccCC--CCCHHHHHHHhcccccCC--CCCCCCCCCCCCchhHHHHHHHHHH
Q 018318 9 NSSLETVDPEIHDLIEKEKRRQCRGIELIASEN--FTSFAVIEALGSALTNKY--SEGMPGNRYYGGNEFIDEIENLCRS 84 (358)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~--~~~~~V~~a~~~~~~~~~--~~g~~~~~~~~~~~~~~~le~~~~~ 84 (358)
+.++...++.....+.+... ..+.+.+..+.+ ..++.|.+++.+.+.... ..+|+. .....++++.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~g~~~l~~~la~ 88 (429)
T 1yiz_A 16 PKRYQGSTKSVWVEYIQLAA-QYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTR------GFGHPRLVQALSK 88 (429)
T ss_dssp SSSCCCCTTCHHHHHHHHHH-HHCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCC------SSCCHHHHHHHHH
T ss_pred hHHhhhCCchHHHHHHHHhc-cCCEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCC------CCCcHHHHHHHHH
Confidence 46677777777766655422 345677776544 357999999988775410 112221 1123456655667
Q ss_pred HHHHhcCCC--CC-CCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeeccc
Q 018318 85 RALQTFHLD--PT-QWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKV 161 (358)
Q Consensus 85 ~la~~~g~~--~~-~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 161 (358)
++++.+|.+ ++ + .+++++|++|+..++.+++++||+|++..+.|.++.. .+...|..+. .++.
T Consensus 89 ~l~~~~g~~~~~~~~---v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~---------~~~~~g~~~~--~~~~ 154 (429)
T 1yiz_A 89 LYSQLVDRTINPMTE---VLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEP---------MVKAAGGIPR--FIPL 154 (429)
T ss_dssp HHHHHHTSCCCTTTS---EEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTCEEE--EEEC
T ss_pred HHHHHhCCCCCCcCC---EEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHH---------HHHHcCCEEE--EEeC
Confidence 777777853 32 2 2444455789999999999999999999998876431 2334565444 3444
Q ss_pred CCC---------CCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccc
Q 018318 162 NSS---------TGYIDYDKLEEKALDFRPKLIICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQE 227 (358)
Q Consensus 162 ~~~---------~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~ 227 (358)
+.+ ++.+|++++++++++ ++++|++++++|+ ... ++++|.++|++||+++|+|++|+. +.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~ 232 (429)
T 1yiz_A 155 KPNKTGGTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEH-MVFEPF 232 (429)
T ss_dssp BCCCSSSSEEGGGCBCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBCTTS
T ss_pred CcccccccccccCcccCHHHHHHHhcc-CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccc-cccCCC
Confidence 432 357999999999864 7888888777765 344 489999999999999999999763 222211
Q ss_pred -c-C-CCC--C-cccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHH
Q 018318 228 -A-A-NPF--E-YCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGAL 299 (358)
Q Consensus 228 -~-~-~~~--~-~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 299 (358)
. . ..+ . +.|+++.|+||+++ |.+.|++++++ ++.+.+........ .+.+....+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~---------------~~~~~l~~~~~~~~-~~~~~~~~~a~ 296 (429)
T 1yiz_A 233 EHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE---------------ALLKNLQMVHQNCV-YTCATPIQEAI 296 (429)
T ss_dssp CCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCH---------------HHHHHHHHHHHTTT-CCCCHHHHHHH
T ss_pred CCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCH---------------HHHHHHHHHHhhcc-cCCChHHHHHH
Confidence 1 1 112 1 57899999999874 44569999876 45555443221111 12344445555
Q ss_pred HHHHHH-----hc-cHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcCC
Q 018318 300 AVALKQ-----AS-TPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 300 ~~al~~-----~~-~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~~ 352 (358)
.++++. .. ...++...++..++++++.+.|++.|+++.. +..++.+|+++..
T Consensus 297 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~ 354 (429)
T 1yiz_A 297 AVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTV-PQGGYFMVADWSS 354 (429)
T ss_dssp HHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEE-CSBSSEEEEECCS
T ss_pred HHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEEccc
Confidence 566665 21 2335677888899999999999988998775 4567789998854
No 83
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.88 E-value=5.1e-22 Score=186.46 Aligned_cols=263 Identities=13% Similarity=0.107 Sum_probs=168.9
Q ss_pred cCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh-
Q 018318 39 SENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV- 117 (358)
Q Consensus 39 ~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~- 117 (358)
+.+.+++.|++++.+.+...+ .++ .+...++ ++.+++++|++. .+++++|++|+..++.++
T Consensus 7 ~~~~~~~~v~~a~~~~~~~~~--~~~-------~~~~~~l----~~~la~~~~~~~-----v~~~~ggt~al~~~~~~~~ 68 (375)
T 2fnu_A 7 SEPCLDKEDKKAVLEVLNSKQ--LTQ-------GKRSLLF----EEALCEFLGVKH-----ALVFNSATSALLTLYRNFS 68 (375)
T ss_dssp CCCCCCHHHHHHHHHHHTSSC--CSS-------SHHHHHH----HHHHHHHHTCSE-----EEEESCHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHcCc--ccC-------ChHHHHH----HHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHhc
Confidence 456789999999988875432 111 1333344 488999999873 366677889999999999
Q ss_pred --cCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCCCc
Q 018318 118 --LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195 (358)
Q Consensus 118 --~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~~~ 195 (358)
++|||+|+++.++|.+... .+...|.. ++.++++. ++.+|++++++++++ ++++|+++++ +|..
T Consensus 69 ~~~~~gd~Vl~~~~~~~~~~~---------~~~~~g~~--~~~~~~~~-~~~~d~~~l~~~i~~-~~~~v~~~~~-tG~~ 134 (375)
T 2fnu_A 69 EFSADRNEIITTPISFVATAN---------MLLESGYT--PVFAGIKN-DGNIDELALEKLINE-RTKAIVSVDY-AGKS 134 (375)
T ss_dssp CCCTTSCEEEECSSSCTHHHH---------HHHHTTCE--EEECCBCT-TSSBCGGGSGGGCCT-TEEEEEEECG-GGCC
T ss_pred ccCCCCCEEEECCCccHhHHH---------HHHHCCCE--EEEeccCC-CCCCCHHHHHhhcCc-CceEEEEeCC-cCCc
Confidence 8999999999998876542 23345654 45555553 457999999998865 6788777766 7878
Q ss_pred cchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCCeeEEEE-eCCCCCCCCCCCCCcccc
Q 018318 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFY-RKGPKPPKKGQPEGAVYD 274 (358)
Q Consensus 196 ~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~gG~i~~-~~~~~~~~~~~~~~~~~~ 274 (358)
.|+++|.++|++||+++|+|++|+.|....+.....+..+++.++|+||++ |+..|++++ +++ +
T Consensus 135 ~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~-~~g~g~~~~~~~~--------------~ 199 (375)
T 2fnu_A 135 VEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPI-TTAEGGAVVTNDS--------------E 199 (375)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSS-CCSSCEEEEESCH--------------H
T ss_pred cCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCc-cccCceEEEeCCH--------------H
Confidence 899999999999999999999998765432110111112334455556998 442366666 433 3
Q ss_pred HHHHhhhhcCCCC------------cCCC-ChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-CceeeeCC
Q 018318 275 FEDKINFAVFPSL------------QGGP-HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGG 340 (358)
Q Consensus 275 ~~~~~~~~~~~~~------------~~~~-~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~ 340 (358)
+.+.+......+. .+.. ....+.+ ++++... ..++.+.++..++++++.+.|++. |+++..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 276 (375)
T 2fnu_A 200 LHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQS-ALGLSQL--KKAPFLMQKREEAALTYDRIFKDNPYFTPLHPL 276 (375)
T ss_dssp HHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHH-HHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGG
T ss_pred HHHHHHHHHhcCCccccccccccccccccCCCCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCC
Confidence 4444433211110 0100 1112211 2222222 245677888999999999999997 88876431
Q ss_pred ----CcceEEEEEcC
Q 018318 341 ----TENHLVLWDLR 351 (358)
Q Consensus 341 ----~~~~~~~v~~~ 351 (358)
...+.+++.+.
T Consensus 277 ~~~~~~~~~~~~~~~ 291 (375)
T 2fnu_A 277 LKDKSSNHLYPILMH 291 (375)
T ss_dssp CSSCCCCSCEEEEEC
T ss_pred CCCCcceEEEEEEeC
Confidence 23355677664
No 84
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.88 E-value=1.1e-21 Score=186.93 Aligned_cols=305 Identities=13% Similarity=0.115 Sum_probs=182.1
Q ss_pred hcccccccchHHHHHHHHHHHH----hhcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHH
Q 018318 8 GNSSLETVDPEIHDLIEKEKRR----QCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENL 81 (358)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~ 81 (358)
.+.+++.++++.+..+.+...+ .++.+.+..+.+. .++.|.+++.+.+......+|+. .....++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~l~~~ 83 (412)
T 2x5d_A 10 RFARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYST------SRGIPRLRRA 83 (412)
T ss_dssp -----------CHHHHHHHHHHHHHTTCCCEECSSCCCCSCCCHHHHHHHHHTC---------C------TTCCHHHHHH
T ss_pred hhHHHhhcCchHHHHHHHHHHHHhhcCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC------CCCcHHHHHH
Confidence 3556666766655554433221 1245677665543 47999999987764321112321 1223456655
Q ss_pred HHHHHHHhcCCC--CCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeec
Q 018318 82 CRSRALQTFHLD--PTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPY 159 (358)
Q Consensus 82 ~~~~la~~~g~~--~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 159 (358)
+.+++.+.+|.+ +++ ..+++++|++|+..++.+++++||+|++..+.|.++.. .+...|.. ++.+
T Consensus 84 ia~~~~~~~g~~~~~~~--~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~---------~~~~~g~~--~~~~ 150 (412)
T 2x5d_A 84 ISHWYRDRYDVQIDPES--EAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIY---------GAVIAGAQ--VRSV 150 (412)
T ss_dssp HHHHHHHHHCCCCCTTT--SEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH---------HHHHHTCE--EEEE
T ss_pred HHHHHHHHhCCCCCCCc--CEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH---------HHHHcCCE--EEEe
Confidence 556666555853 211 13445556789999999999999999999998876431 22345554 3444
Q ss_pred ccCCC-CCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccccCCC--
Q 018318 160 KVNSS-TGYIDYDKLEEKALDFRPKLIICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAANP-- 231 (358)
Q Consensus 160 ~~~~~-~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~-- 231 (358)
+.+.+ ++.+|++++++++.+ ++++|++++++|| ... ++++|.++|++||+++|+|++|+.+.. .+....+
T Consensus 151 ~~~~~~~~~~d~~~l~~~i~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~-~g~~~~~~~ 228 (412)
T 2x5d_A 151 PLVPGIDFFNELERAIRESIP-KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVY-DGWKAPSIM 228 (412)
T ss_dssp ECSTTSCHHHHHHHHHHTEES-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC-TTCCCCCGG
T ss_pred ecCCccCCCCCHHHHHHhccc-CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecccccccc-CCCCCCChh
Confidence 44432 234789999998864 7898888777765 333 478999999999999999999875432 1111111
Q ss_pred -C---CcccEEEecCCccC--CCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHH
Q 018318 232 -F---EYCHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQ 305 (358)
Q Consensus 232 -~---~~~d~~~~s~~K~l--~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~ 305 (358)
+ .+.+++++|+||++ +|.+.|++++++ ++.+.+....... ..+.+....+++..+++.
T Consensus 229 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~---------------~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~ 292 (412)
T 2x5d_A 229 QVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNP---------------ELVSALARIKSYH-DYGTFTPLQVAAIAALEG 292 (412)
T ss_dssp GSTTGGGTEEEEEECC-CCSCTTSCCEEEEECH---------------HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHS
T ss_pred hccCccCcEEEEecCccccCCcccceEEEEcCH---------------HHHHHHHHHHhhh-ccCCCHHHHHHHHHHHhC
Confidence 2 15679999999998 355679999876 4555444322111 112344444444455543
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 306 ASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
. ...++...+++.++++++.+.|++.|+++.. +..++.+|+++.
T Consensus 293 ~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~ 336 (412)
T 2x5d_A 293 D-QQCVRDIARQYQQRRDVLVKGLREAGWMVEN-PKASMYVWAKIP 336 (412)
T ss_dssp C-SHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC-CSBSSEEEEECC
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHHHHCCCEecC-CCeeeEEEEEcC
Confidence 2 2345777888899999999999988988764 445667888873
No 85
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.88 E-value=8.4e-23 Score=191.88 Aligned_cols=247 Identities=16% Similarity=0.134 Sum_probs=166.7
Q ss_pred CCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh-cC
Q 018318 41 NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV-LE 119 (358)
Q Consensus 41 ~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~-~~ 119 (358)
..+++++.+++.+.+...+ +. ..+...++| +.+++++|.+. .++++|||+|+..++.++ ++
T Consensus 12 ~~~~~~v~~a~~~~~~~~~--------~~-~~~~~~~l~----~~la~~~~~~~-----~~~~~sGt~al~~al~~~~~~ 73 (367)
T 3nyt_A 12 ARIKDKIDAGIQRVLRHGQ--------YI-LGPEVTELE----DRLADFVGAKY-----CISCANGTDALQIVQMALGVG 73 (367)
T ss_dssp HHHHHHHHHHHHHHHHHCC--------CS-SCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHTTCC
T ss_pred cccCHHHHHHHHHHHhcCC--------cc-CChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHhCCC
Confidence 3456788888877665421 11 224455565 78999999874 377889999999999999 89
Q ss_pred CCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchH
Q 018318 120 PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYA 199 (358)
Q Consensus 120 ~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~ 199 (358)
+||+|+++.++|.+... .+...|. +++.++++++++.+|++++++++.+ ++++|+.++ .+|...|++
T Consensus 74 ~gd~Vi~~~~~~~~~~~---------~~~~~G~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~~~~~~ 140 (367)
T 3nyt_A 74 PGDEVITPGFTYVATAE---------TVALLGA--KPVYVDIDPRTYNLDPQLLEAAITP-RTKAIIPVS-LYGQCADFD 140 (367)
T ss_dssp TTCEEEEESSSCTHHHH---------HHHHTTC--EEEEECBCTTTCSBCGGGTGGGCCT-TEEEECCBC-GGGCCCCHH
T ss_pred CcCEEEECCCccHHHHH---------HHHHcCC--EEEEEecCCccCCcCHHHHHHhcCc-CCcEEEeeC-CccChhhHH
Confidence 99999999998876431 2334565 4555666655688999999999864 778777443 356778999
Q ss_pred HHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecC--CccCCC-CCeeEEEEeCCCCCCCCCCCCCccccHH
Q 018318 200 RFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTT--HKSLRG-PRAGMIFYRKGPKPPKKGQPEGAVYDFE 276 (358)
Q Consensus 200 ~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~--~K~l~g-~~gG~i~~~~~~~~~~~~~~~~~~~~~~ 276 (358)
+|.++|++||+++|+|++|+.|....+..... ..|++++|+ +|++++ +.||+++++++ ++.
T Consensus 141 ~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~--~~di~~~Sf~~~K~l~~~g~gg~~~~~~~--------------~l~ 204 (367)
T 3nyt_A 141 AINAIASKYGIPVIEDAAQSFGASYKGKRSCN--LSTVACTSFFPSAPLGCYGDGGAIFTNDD--------------ELA 204 (367)
T ss_dssp HHHHHHHHTTCCBEEECTTTTTCEETTEETTS--SSSEEEEECCTTSSSCCSSCCEEEEESCH--------------HHH
T ss_pred HHHHHHHHcCCEEEEECccccCCeECCeeccC--CCCEEEEECCCCCcCCCcCceeEEEeCCH--------------HHH
Confidence 99999999999999999998876543321111 228988885 899976 45788888764 454
Q ss_pred HHhhhhcCCCC--------cC-CCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceee
Q 018318 277 DKINFAVFPSL--------QG-GPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLV 337 (358)
Q Consensus 277 ~~~~~~~~~~~--------~~-~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~ 337 (358)
+.+......+. .+ +.....+. .++++..+ +.++.+.++.+++++++++.|++.|+.+.
T Consensus 205 ~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~-aa~~~~~l--~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ 271 (367)
T 3nyt_A 205 TAIRQIARHGQDRRYHHIRVGVNSRLDTLQ-AAILLPKL--EIFEEEIALRQKVAAEYDLSLKQVGIGTP 271 (367)
T ss_dssp HHHHHHTBTTEEETTEECSCCCBCCCCHHH-HHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHhcCCCcCceeeccCcCCCccHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCeecc
Confidence 44443221110 00 11111121 12222222 23456778888999999999999887654
No 86
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.88 E-value=9.9e-22 Score=185.87 Aligned_cols=258 Identities=16% Similarity=0.135 Sum_probs=174.1
Q ss_pred CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh-cCC
Q 018318 42 FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV-LEP 120 (358)
Q Consensus 42 ~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~-~~~ 120 (358)
.+|+.+++++.+.+.... + . ..+...+++ +.+++++|.+. .+++++|++|+..++.++ +++
T Consensus 17 ~~~~~~~~a~~~~~~~~~---~-----~-~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~al~~~~~~~~~~~ 78 (393)
T 1mdo_A 17 AMGAEELAAVKTVLDSGW---I-----T-TGPKNQELE----AAFCRLTGNQY-----AVAVSSATAGMHIALMALGIGE 78 (393)
T ss_dssp CCCHHHHHHHHHHHHHTC---C-----S-SSHHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHHHhcCC---c-----C-CChHHHHHH----HHHHHHhCCCc-----EEEecChHHHHHHHHHHcCCCC
Confidence 367889999887775432 1 1 123444554 78999999864 366778889999999999 999
Q ss_pred CCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHH
Q 018318 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYAR 200 (358)
Q Consensus 121 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~ 200 (358)
||+|+++.++|.+... .+...|.. ++.++++++++.+|++++++++++ ++++|++++ .+|.+.++++
T Consensus 79 gd~Vl~~~~~~~~~~~---------~~~~~g~~--~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~-~~G~~~~~~~ 145 (393)
T 1mdo_A 79 GDEVITPSMTWVSTLN---------MIVLLGAN--PVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPVH-YAGAPADLDA 145 (393)
T ss_dssp TCEEEEESSSCHHHHH---------HHHHTTCE--EEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBC-GGGCCCCHHH
T ss_pred CCEEEeCCCccHhHHH---------HHHHCCCE--EEEEeccCCcCCCCHHHHHHhcCC-CceEEEEeC-CCCCcCCHHH
Confidence 9999999998876431 23445654 445555544578999999999975 688887764 4666789999
Q ss_pred HHHHHHHhCCEEEEechhhhhhhhccccCCCCCc-ccEEEecCC--ccCCCCCeeEEEEeCCCCCCCCCCCCCccccHHH
Q 018318 201 FRAVADKCGALLLCDMAHISGLVAAQEAANPFEY-CHIVTTTTH--KSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFED 277 (358)
Q Consensus 201 i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~-~d~~~~s~~--K~l~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~ 277 (358)
|.++|+++|+++|+|++|+.|....+. + + + .|++++|+| |+++|++||+++++++ ++.+
T Consensus 146 i~~l~~~~~~~li~D~a~~~g~~~~~~-~--~-~~~d~~~~S~~k~K~l~~~~~g~~~~~~~--------------~~~~ 207 (393)
T 1mdo_A 146 IYALGERYGIPVIEDAAHATGTSYKGR-H--I-GARGTAIFSFHAIKNITCAEGGIVVTDNP--------------QFAD 207 (393)
T ss_dssp HHHHHHHHTCCBCEECTTCTTCEETTE-E--T-TSSSEEEEECCTTSSSCSSSCEEEEESCH--------------HHHH
T ss_pred HHHHHHHcCCeEEEECccccCCeECCe-e--c-CCCCeEEEeCCCCCccccccceEEEeCCH--------------HHHH
Confidence 999999999999999999877544221 1 1 3 799999999 9998888999998743 3333
Q ss_pred HhhhhcCCC--------------------CcCC-CChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCcee
Q 018318 278 KINFAVFPS--------------------LQGG-PHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSL 336 (358)
Q Consensus 278 ~~~~~~~~~--------------------~~~~-~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~ 336 (358)
.+......+ ..|. .....+.+ ++++..+ ..+++..++.+++++++++.|.+.++++
T Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 284 (393)
T 1mdo_A 208 KLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNA-AIALAQL--QKLDALNARRAAIAAQYHQAMADLPFQP 284 (393)
T ss_dssp HHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHH-HHHHHHH--HTHHHHHHHHHHHHHHHHHHHHTSSCEE
T ss_pred HHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 332211100 0011 11122221 2222222 2356677778889999999999988776
Q ss_pred eeCC-----CcceEEEEEcC
Q 018318 337 VTGG-----TENHLVLWDLR 351 (358)
Q Consensus 337 ~~~~-----~~~~~~~v~~~ 351 (358)
...+ ...+.+|+.+.
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~ 304 (393)
T 1mdo_A 285 LSLPSWEHIHAWHLFIIRVD 304 (393)
T ss_dssp CCCCSSCEECCCSCEEEECC
T ss_pred ccCCCCCCCceeEEEEEEec
Confidence 5311 34567888764
No 87
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.88 E-value=2.8e-21 Score=189.76 Aligned_cols=241 Identities=13% Similarity=0.038 Sum_probs=161.3
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc-------C-CCC------eEEEecCCCCccccc
Q 018318 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL-------E-PHD------RIMGLDLPSGGHLTH 137 (358)
Q Consensus 72 ~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~-------~-~gd------~Vl~~~~~~~~~~~~ 137 (358)
.+...++|+++++++++++|++.. ..+++++||+|+..++.++. + +|| +|++....|.++.
T Consensus 143 s~~~~~le~~~~~~la~l~g~~~~---~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~-- 217 (515)
T 2jis_A 143 APVFVLMEEEVLRKLRALVGWSSG---DGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQ-- 217 (515)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSC---EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH--
T ss_pred chHHHHHHHHHHHHHHHHhCCCCC---CeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHH--
Confidence 355668888899999999999753 23555667889888887763 2 576 7788877776543
Q ss_pred cccccCCccccccccee-EEeecccCCCCCCCCHHHHHHHHhhc-----CCcEEEEcCCC--CCCccchHHHHHHHHHhC
Q 018318 138 GYYTSGGKKISATSIYF-ESLPYKVNSSTGYIDYDKLEEKALDF-----RPKLIICGGSA--YPRDWDYARFRAVADKCG 209 (358)
Q Consensus 138 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~id~~~l~~~l~~~-----~~~~v~~~~~~--~~~~~~l~~i~~la~~~g 209 (358)
+.+...|.+. .++.++.+ +++.+|+++|++++++. +|++|+++.++ +|...|+++|+++|++||
T Consensus 218 -------~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g 289 (515)
T 2jis_A 218 -------KGAAFLGLGTDSVRVVKAD-ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHG 289 (515)
T ss_dssp -------HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHT
T ss_pred -------HHHHHcCCCCCcEEEEecC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcC
Confidence 1233345422 23444544 36889999999999753 47888776554 457889999999999999
Q ss_pred CEEEEechhhhhhhhccccCCCC---CcccEEEecCCccCCCCCe-eEEEEeCCCCCCCCCCCCCccccHHHHh----hh
Q 018318 210 ALLLCDMAHISGLVAAQEAANPF---EYCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQPEGAVYDFEDKI----NF 281 (358)
Q Consensus 210 ~~lvvD~a~~~g~~~~~~~~~~~---~~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 281 (358)
+++|+|++|+.+....+.+...+ .++|++++++|||+++|.| |+++++++. ++.+.. ..
T Consensus 290 ~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~-------------~~~~~~~~~~~~ 356 (515)
T 2jis_A 290 LWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTS-------------NLLKRCHGSQAS 356 (515)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCS-------------CHHHHHHCC---
T ss_pred CeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChH-------------HHHHHHhcCCch
Confidence 99999999887765433221112 2789999999999988875 999887740 011110 00
Q ss_pred hc----------C----CCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-CceeeeC
Q 018318 282 AV----------F----PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTG 339 (358)
Q Consensus 282 ~~----------~----~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~ 339 (358)
.. + ...+.+.... ..+++++++.+...++++++++..++++++.+.|++. |++++.+
T Consensus 357 yl~~~~~~~~~~~~~~~~~~~~~rr~~-al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~ 428 (515)
T 2jis_A 357 YLFQQDKFYDVALDTGDKVVQCGRRVD-CLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVME 428 (515)
T ss_dssp ------CCSCGGGCCGGGCSCSSCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSC
T ss_pred hccCCcccccccCCCCCCCCCCCCccc-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 00 0 0001111111 1234444555544567888999999999999999987 8998763
No 88
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.88 E-value=2.8e-21 Score=182.76 Aligned_cols=281 Identities=15% Similarity=0.115 Sum_probs=179.7
Q ss_pred cceeEeccCC--CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHH-HHHHHHHHHHHhcC--CCCCCCCccccccCC
Q 018318 32 RGIELIASEN--FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDE-IENLCRSRALQTFH--LDPTQWGVNVQPYSG 106 (358)
Q Consensus 32 ~~~~l~a~~~--~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~-le~~~~~~la~~~g--~~~~~~~~~v~~~sG 106 (358)
+.+.+..+.. .+++.|.+++.+.+.... .+|+.. ..+ +++.+.+++.+.+| ++++ .|++++|
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~--------~~~~lr~~la~~l~~~~g~~~~~~----~v~~t~g 95 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMHGV-FGYSRW--------KNDEFLAAIAHWFSTQHYTAIDSQ----TVVYGPS 95 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTTCC-CCCCCS--------CCHHHHHHHHHHHHHHSCCCCCGG----GEEEESC
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhCCC-CCCCCC--------ChHHHHHHHHHHHHHhcCCCCCHH----HEEEcCC
Confidence 4566655543 347999999988774321 233221 224 55556677777778 4443 2445555
Q ss_pred -hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEE
Q 018318 107 -SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185 (358)
Q Consensus 107 -t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v 185 (358)
++|+..++.++++|||+|++..|.|.++.. .+...|..+..++.+.+..++.+|++++++++++.++++|
T Consensus 96 ~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~---------~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v 166 (390)
T 1d2f_A 96 VIYMVSELIRQWSETGEGVVIHTPAYDAFYK---------AIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIM 166 (390)
T ss_dssp HHHHHHHHHHHSSCTTCEEEEEESCCHHHHH---------HHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCcHHHHH---------HHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEE
Confidence 679999999999999999999998876431 2234565444443321111235999999999975578888
Q ss_pred EEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C-cc-cEEEecCCccCC--CCCeeE
Q 018318 186 ICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YC-HIVTTTTHKSLR--GPRAGM 253 (358)
Q Consensus 186 ~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~-~~-d~~~~s~~K~l~--g~~gG~ 253 (358)
++++++|| ...| +++|.++|++||+++|+|++|+.+ ...+....++ . +. |. +.|+||+++ |.+.|+
T Consensus 167 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~ 244 (390)
T 1d2f_A 167 LLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDM-VWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAY 244 (390)
T ss_dssp EEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTC-BCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEE
T ss_pred EEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheE
Confidence 87777765 3444 889999999999999999998643 2222111122 1 22 77 999999873 556799
Q ss_pred EEEeCCCCCCCCCCCCCccccHHHHhhhhcC-CCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh-
Q 018318 254 IFYRKGPKPPKKGQPEGAVYDFEDKINFAVF-PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG- 331 (358)
Q Consensus 254 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 331 (358)
++++++ ++.+.+..... ....++++....+++.++++.. ...++...+++.++++++.+.|++
T Consensus 245 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 309 (390)
T 1d2f_A 245 GIIENS--------------SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG-APWLDALRIYLKDNLTYIADKMNAA 309 (390)
T ss_dssp EEECSH--------------HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCH--------------HHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 998753 45554443222 1112234444445545556542 223467778889999999999988
Q ss_pred C-CceeeeCCCcceEEEEEcCC
Q 018318 332 K-GYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 332 ~-G~~~~~~~~~~~~~~v~~~~ 352 (358)
. |+++.. +..+..+|+++..
T Consensus 310 ~~~~~~~~-~~~~~~~~~~~~~ 330 (390)
T 1d2f_A 310 FPELNWQI-PQSTYLAWLDLRP 330 (390)
T ss_dssp CSSCCCCC-CSBCSEEEEECGG
T ss_pred CCCCEEec-CCccEEEEEEccc
Confidence 4 887764 4456677888754
No 89
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.88 E-value=1.6e-22 Score=189.10 Aligned_cols=270 Identities=11% Similarity=0.023 Sum_probs=178.5
Q ss_pred hcceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCC---CCCchhHHHHHHHHHHHHHHhcCCCCCCCCcccc-ccCC
Q 018318 31 CRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRY---YGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQ-PYSG 106 (358)
Q Consensus 31 ~~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~---~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~-~~sG 106 (358)
++.+.|.|+++.+|++|+++|..++...++ ++.+.+ ..+.++.+.+| ++|+.+++++|++.+. -.++ +++|
T Consensus 4 ~~~~~f~pgpt~~~~~V~~a~~~~~~~~~~--~~~s~~~~~hr~~~~~~~~~-~~r~~la~ll~~~~~~--~v~f~t~~~ 78 (361)
T 3m5u_A 4 MRKINFSAGPSTLPLEILEQAQKELCDYQG--RGYSIMEISHRTKVFEEVHF-GAQEKAKKLYELNDDY--EVLFLQGGA 78 (361)
T ss_dssp CCCEECCSSSCCCCHHHHHHHHHTSSSGGG--SSSCGGGSCSSSHHHHHHHH-HHHHHHHHHHTCCTTE--EEEEESSHH
T ss_pred cceEeecCCCCCCcHHHHHHHHHHHHhccc--CCceeeccCCCCHHHHHHHH-HHHHHHHHHhCCCCCc--eEEEEcCcH
Confidence 367889999999999999999988865443 333211 22446666665 7899999999996421 1243 4567
Q ss_pred hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCC--CCHHHHHHHHhhcCCcE
Q 018318 107 SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGY--IDYDKLEEKALDFRPKL 184 (358)
Q Consensus 107 t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--id~~~l~~~l~~~~~~~ 184 (358)
|+++.+++.+++ +||++.+... +.+++... ..++..|..+..++. +. ++. ++++. + |++ ++++
T Consensus 79 T~a~n~~~~~~~-~~~~~~~i~~---~~~~~~~~----~~a~~~G~~v~~~~~--~~-~g~~~~~~~~-~--l~~-~t~l 143 (361)
T 3m5u_A 79 SLQFAMIPMNLA-LNGVCEYANT---GVWTKKAI----KEAQILGVNVKTVAS--SE-ESNFDHIPRV-E--FSD-NADY 143 (361)
T ss_dssp HHHHHHHHHHHC-CSSCEEEEEC---SHHHHHHH----HHHHHTTCCEEEEEE--CT-TTTSCSCCCC-C--CCT-TSSE
T ss_pred HHHHHHHHHhcC-CCCeEEEEeC---CHHHHHHH----HHHHHcCCceEEEec--cc-CcCCCcCChh-h--cCC-CCCE
Confidence 889999999988 8997643332 22222211 012234655555544 32 332 56666 4 654 7898
Q ss_pred EEEcCCCC--CCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCCe-eEEEEeCCCC
Q 018318 185 IICGGSAY--PRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA-GMIFYRKGPK 261 (358)
Q Consensus 185 v~~~~~~~--~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g-G~i~~~~~~~ 261 (358)
|.+++.++ |...|. +++ +|+++++|++|+.|.. +.+++.+|++++|+||++ ||.| |+++.+++..
T Consensus 144 v~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~-----~id~~~~d~~~~s~~K~~-gp~G~g~l~~~~~~~ 211 (361)
T 3m5u_A 144 AYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSR-----KVDFSNIALFYGGVQKNA-GISGLSCIFIRKDML 211 (361)
T ss_dssp EEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSS-----CCCCTTEEEEEEETTTTS-SCTTCEEEEEEHHHH
T ss_pred EEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCC-----CCCcccCCEEEEechhcc-CCCccEEEEEcHHHH
Confidence 87766544 655441 344 4999999999998854 344557899999999998 7998 9999987521
Q ss_pred C-CCC-CCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHhhCC-c-ee
Q 018318 262 P-PKK-GQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP-AFKAYAKQVKANAVALGNYLTGKG-Y-SL 336 (358)
Q Consensus 262 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~G-~-~~ 336 (358)
+ +.+ ..+.+. ++....+. ....++|+...+.++.+|++.+.+. +++.+.++..++++++++.|+++| + .+
T Consensus 212 ~~~~~~~~p~~~--~~~~~~~~---~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~ 286 (361)
T 3m5u_A 212 ERSKNKQIPSML--NYLTHAEN---QSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKG 286 (361)
T ss_dssp HHHHTCCCCGGG--CHHHHHHT---TTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEE
T ss_pred hhhcCCCCCcee--ehHHHhhc---CCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeec
Confidence 1 111 000000 11111111 1223578889999999999988776 689999999999999999999986 5 65
Q ss_pred e
Q 018318 337 V 337 (358)
Q Consensus 337 ~ 337 (358)
.
T Consensus 287 ~ 287 (361)
T 3m5u_A 287 H 287 (361)
T ss_dssp S
T ss_pred c
Confidence 4
No 90
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.88 E-value=6.1e-22 Score=188.51 Aligned_cols=305 Identities=14% Similarity=0.075 Sum_probs=187.8
Q ss_pred cccccccchHHHHHHHHHHHH--hhcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHH
Q 018318 9 NSSLETVDPEIHDLIEKEKRR--QCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRS 84 (358)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~ 84 (358)
+.++..++++.+..+.+.... .++.+.+..+.+. .++.|.+++.+.+......+|+.. ....++++.+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr~~ia~ 96 (404)
T 2o1b_A 23 SNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAF------HGKEAFKQAIVD 96 (404)
T ss_dssp CHHHHTSCCCTTC-------CCCSSCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCT------TCCHHHHHHHHH
T ss_pred hhHhhhCCchHHHHHHHHHHhcCCCCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCC------CCCHHHHHHHHH
Confidence 445555555544444333221 1245677766543 479999998877643111123221 123456655556
Q ss_pred HHHHhcCCCCCCCCccccccCC-hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCC
Q 018318 85 RALQTFHLDPTQWGVNVQPYSG-SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS 163 (358)
Q Consensus 85 ~la~~~g~~~~~~~~~v~~~sG-t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (358)
++++.+|++.+.. ..|++++| ++|+..++.+++++||+|++..|.|.++.. .+...|..+ +.++.+.
T Consensus 97 ~~~~~~g~~~~~~-~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~---------~~~~~g~~~--~~v~~~~ 164 (404)
T 2o1b_A 97 FYQRQYNVTLDKE-DEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLA---------GVLLADGKP--VPLNLEP 164 (404)
T ss_dssp HHHHHHCCCCCTT-TSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHH---------HHHHTTCEE--EEEECCT
T ss_pred HHHHHhCCCCCCc-ccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH---------HHHHCCCEE--EEeccCc
Confidence 6666669751100 02444555 679999999999999999999998876531 223456543 4444443
Q ss_pred CCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccccCC--CCC---
Q 018318 164 STGYIDYDKLEEKALDFRPKLIICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAAN--PFE--- 233 (358)
Q Consensus 164 ~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~--~~~--- 233 (358)
+++.+|++++++++.+ ++++|++++++|| ... ++++|.++|++||+++|+|++|+.+ ...+.... .+.
T Consensus 165 ~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~ 242 (404)
T 2o1b_A 165 PHYLPDWSKVDSQIID-KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAF-GFDAKNPSILASENGK 242 (404)
T ss_dssp TTCCCCGGGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTC-BSSSCCCCGGGSTTHH
T ss_pred ccCcCCHHHHHHhhcc-CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCChhhcCCCC
Confidence 2446899999999864 6888888777665 344 4789999999999999999998643 22221111 111
Q ss_pred cccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHH
Q 018318 234 YCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAF 311 (358)
Q Consensus 234 ~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~ 311 (358)
+.+++++|+||+++ |.+.|++++++ ++.+.+....... ..+.+....+++..+++.. ...+
T Consensus 243 ~~~i~~~s~sK~~g~~G~r~G~~~~~~---------------~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~-~~~~ 305 (404)
T 2o1b_A 243 DVAIEIYSLSKGYNMSGFRVGFAVGNK---------------DMIQALKKYQTHT-NAGMFGALQDAAIYALNHY-DDFL 305 (404)
T ss_dssp HHEEEEEESTTTTTCGGGCCEEEEECH---------------HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHC-HHHH
T ss_pred CCEEEEEecchhccCchhheEeEecCH---------------HHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhcC-HHHH
Confidence 45789999999984 55679998876 4555444321111 1233444444445555442 2335
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 312 KAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 312 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
+...+++.++++++.+.|++.|+++.. +..+..+|+++.
T Consensus 306 ~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~ 344 (404)
T 2o1b_A 306 EEQSNVFKTRRDRFEAMLAKADLPFVH-AKGGIYVWLETP 344 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEC-CCBSSEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeecC-CCcceEEEEeCC
Confidence 677788889999999999998988765 345666888874
No 91
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.88 E-value=3.2e-21 Score=181.20 Aligned_cols=280 Identities=15% Similarity=0.105 Sum_probs=183.2
Q ss_pred hcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCC--CCCCCCccccccCC
Q 018318 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHL--DPTQWGVNVQPYSG 106 (358)
Q Consensus 31 ~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~--~~~~~~~~v~~~sG 106 (358)
++.+.+..+.+. .+|.|.+++.+.+.... .+|+. . +. ++++.+.+++.+.+|. +.+ ..+++++|
T Consensus 23 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~-~---~~----~lr~~la~~~~~~~~~~~~~~---~i~~t~g~ 90 (377)
T 3fdb_A 23 QGVLPLWVAESDFSTCPAVLQAITDAVQREA-FGYQP-D---GS----LLSQATAEFYADRYGYQARPE---WIFPIPDV 90 (377)
T ss_dssp TTSEECCSSCCCSCCCHHHHHHHHHHHHTTC-CSSCC-S---SC----CHHHHHHHHHHHHHCCCCCGG---GEEEESCH
T ss_pred CCeeeecccCCCCCCCHHHHHHHHHHHHcCC-CCCCC-C---CH----HHHHHHHHHHHHHhCCCCCHH---HEEEeCCh
Confidence 356777766553 48999999988775422 23332 1 22 3443444666666664 333 23444555
Q ss_pred hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEE
Q 018318 107 SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLII 186 (358)
Q Consensus 107 t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~ 186 (358)
++|+..++.+++++||+|++..+.|.++.. .+...|..+ ++++.+. . +|++++++++++ ++++|+
T Consensus 91 ~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g~~~--~~~~~~~--~-~d~~~l~~~l~~-~~~~v~ 155 (377)
T 3fdb_A 91 VRGLYIAIDHFTPAQSKVIVPTPAYPPFFH---------LLSATQREG--IFIDATG--G-INLHDVEKGFQA-GARSIL 155 (377)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEESCCTHHHH---------HHHHHTCCE--EEEECTT--S-CCHHHHHHHHHT-TCCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCcHhHHH---------HHHHcCCEE--EEccCCC--C-CCHHHHHHHhcc-CCCEEE
Confidence 789999999999999999999998876531 233456544 4444442 2 999999999976 688888
Q ss_pred EcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhcc-ccCCCCC-----cccEEEecCCccC--CCCCeeE
Q 018318 187 CGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQ-EAANPFE-----YCHIVTTTTHKSL--RGPRAGM 253 (358)
Q Consensus 187 ~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~-~~~~~~~-----~~d~~~~s~~K~l--~g~~gG~ 253 (358)
+++++|+ ... ++++|.++|++||+++|+|++|+. +...+ ....++. +.++++.|++|++ +|.+.|+
T Consensus 156 i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 234 (377)
T 3fdb_A 156 LCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAP-LVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQ 234 (377)
T ss_dssp EESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGG-GBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEE
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccch-hhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheE
Confidence 8877766 333 577888889999999999999864 33322 1111221 3348899999997 3456688
Q ss_pred EEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-
Q 018318 254 IFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK- 332 (358)
Q Consensus 254 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 332 (358)
+++.++ ++.+.+..... ....+++....+++.+++... ...++...++..++++++.+.|++.
T Consensus 235 ~~~~~~--------------~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~ 298 (377)
T 3fdb_A 235 IIFSNP--------------SDAEHWQQLSP-VIKDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPKRI 298 (377)
T ss_dssp EECCSH--------------HHHHHHHHSCH-HHHCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEeCCH--------------HHHHHHHHHHH-hhcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 877553 45555543211 111234445555545555543 2335778888999999999999985
Q ss_pred -CceeeeCCCcceEEEEEcCCCCC
Q 018318 333 -GYSLVTGGTENHLVLWDLRPLGL 355 (358)
Q Consensus 333 -G~~~~~~~~~~~~~~v~~~~~~~ 355 (358)
|+++.. +..+..+|+++...+.
T Consensus 299 ~~~~~~~-~~~~~~~~~~~~~~~~ 321 (377)
T 3fdb_A 299 PGAKITP-MQATYLMWIDFRDTTI 321 (377)
T ss_dssp TTCEECC-CSBCSEEEEECTTSCC
T ss_pred CCceEec-CCeeEEEEEECcccCC
Confidence 898875 4567778999876544
No 92
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.88 E-value=1.1e-21 Score=187.42 Aligned_cols=261 Identities=14% Similarity=0.075 Sum_probs=165.7
Q ss_pred CCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh-c
Q 018318 40 ENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV-L 118 (358)
Q Consensus 40 ~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~-~ 118 (358)
...+++++++++.+.+.......|+. ..+..+...+++ +++++++|++. .+++++|++|+..++.++ +
T Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~g~~~l~~~l~----~~la~~~g~~~-----~i~~~~gt~al~~~~~~~~~ 79 (418)
T 2c81_A 11 WPQHSDRTRRKIEEVFQSNRWAISGY--WTGEESMERKFA----KAFADFNGVPY-----CVPTTSGSTALMLALEALGI 79 (418)
T ss_dssp SSCCCHHHHHHHHHHHHHTCCSTTSB--CCSSCCHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHhcCCccccCc--ccCCHHHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcCC
Confidence 34568999999988775431111221 111123344554 88999999874 366888999999999999 8
Q ss_pred CCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCCCccch
Q 018318 119 EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDY 198 (358)
Q Consensus 119 ~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l 198 (358)
++||+|+++.++|.+... .+...|.. ++.++++.+++.+|++++++++++ ++++|+++++ +|...++
T Consensus 80 ~~gd~Vl~~~~~~~~~~~---------~~~~~g~~--~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~-~G~~~~~ 146 (418)
T 2c81_A 80 GEGDEVIVPSLTWIATAT---------AVLNVNAL--PVFVDVEADTYCIDPQLIKSAITD-KTKAIIPVHL-FGSMANM 146 (418)
T ss_dssp CTTCEEEEESSSCTHHHH---------HHHHTTCE--EEEECBCTTTCSBCHHHHGGGCCT-TEEEECCBCC-TTCCCCH
T ss_pred CCcCEEEECCCccHhHHH---------HHHHcCCE--EEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEeCC-cCCcccH
Confidence 999999999998876541 23445654 445555544678999999999865 6888877653 6777899
Q ss_pred HHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCCeeEEEEeCCCCCCCCCCCCCccccHHHH
Q 018318 199 ARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDK 278 (358)
Q Consensus 199 ~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~ 278 (358)
++|.++|++||+++|+|++|+.|....+.....+..+++.++|.||++++++||+++++++ ++.+.
T Consensus 147 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~~g~~g~~~~~~~--------------~l~~~ 212 (418)
T 2c81_A 147 DEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTAGEGGIIVTKNP--------------RLFEL 212 (418)
T ss_dssp HHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCH--------------HHHHH
T ss_pred HHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcccCCCCeEEEEECCH--------------HHHHH
Confidence 9999999999999999999987753222111111123444445599986557899988643 34333
Q ss_pred hhhhcCC--------------CC--cCCCChh----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-Cceee
Q 018318 279 INFAVFP--------------SL--QGGPHNH----QIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLV 337 (358)
Q Consensus 279 ~~~~~~~--------------~~--~~~~~~~----~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~ 337 (358)
+...... +. .+.+... .+..+.+++.....+.++.+.++.+++++++.+.|.+. |+++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 292 (418)
T 2c81_A 213 IQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVM 292 (418)
T ss_dssp HHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEC
T ss_pred HHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccC
Confidence 3321111 00 0000000 00111122221111235677888888999999999887 88886
Q ss_pred e
Q 018318 338 T 338 (358)
Q Consensus 338 ~ 338 (358)
.
T Consensus 293 ~ 293 (418)
T 2c81_A 293 K 293 (418)
T ss_dssp C
T ss_pred C
Confidence 3
No 93
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.88 E-value=4.6e-22 Score=188.95 Aligned_cols=284 Identities=12% Similarity=0.046 Sum_probs=180.9
Q ss_pred eeEecc-CC--CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCC--CCCCccccccCChH
Q 018318 34 IELIAS-EN--FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDP--TQWGVNVQPYSGSP 108 (358)
Q Consensus 34 ~~l~a~-~~--~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~--~~~~~~v~~~sGt~ 108 (358)
+.+..+ .+ .++|.|++++.+.+......+|... .| ..++.+.+++++++++|.+. .+ ..+++++|++
T Consensus 42 id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~---~g---~~~l~~~l~~~l~~~~g~~~~~~~--~i~~~~g~~~ 113 (407)
T 3nra_A 42 VDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEY---RG---DLGIRDLLAPRLAAFTGAPVDARD--GLIITPGTQG 113 (407)
T ss_dssp EETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCT---TC---CHHHHHHHHHHHHHHHTSCCCTTT--SEEEESHHHH
T ss_pred eeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCC---CC---CHHHHHHHHHHHHHHhCCCCCCCC--cEEEeCCcHH
Confidence 555443 23 3578999999887753211122221 11 22444555688999999842 11 2344556678
Q ss_pred HHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeeccc---CCCCCCCCHHHHHHHHhhcCCcEE
Q 018318 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKV---NSSTGYIDYDKLEEKALDFRPKLI 185 (358)
Q Consensus 109 a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~id~~~l~~~l~~~~~~~v 185 (358)
|+..++.+++++||+|++..+.|.++.. .+...|..+..++++. +++++.+|++++++++++ ++++|
T Consensus 114 a~~~~~~~l~~~gd~vl~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v 183 (407)
T 3nra_A 114 ALFLAVAATVARGDKVAIVQPDYFANRK---------LVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARVF 183 (407)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCCTHHHH---------HHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEE
T ss_pred HHHHHHHHhCCCCCEEEEcCCcccchHH---------HHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-CCcEE
Confidence 9999999999999999999998876531 2344565444443311 024678999999999976 78888
Q ss_pred EEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC-------CcccEEEecCCccCC--CCCe
Q 018318 186 ICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF-------EYCHIVTTTTHKSLR--GPRA 251 (358)
Q Consensus 186 ~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~-------~~~d~~~~s~~K~l~--g~~g 251 (358)
++++++|+ ...+ +++|.++|++||+++|+|++|+.+.. .+....++ .+.++++.|+||+++ |.+.
T Consensus 184 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~-~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~ 262 (407)
T 3nra_A 184 LFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRY-AGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRL 262 (407)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBC-TTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCC
T ss_pred EEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEcccccccc-CCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeE
Confidence 88777765 4556 89999999999999999999875332 22111111 145689999999974 4566
Q ss_pred eEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 018318 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (358)
Q Consensus 252 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 331 (358)
|++++++ ++.+.+......... +++....+++..++.. ....++..+++.+++++++++.|++
T Consensus 263 G~~~~~~---------------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~ 325 (407)
T 3nra_A 263 GVAFGSR---------------AIIARMEKLQAIVSL-RAAGYSQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRG 325 (407)
T ss_dssp EEEEECH---------------HHHHHHHHHHHHHTS-SSCHHHHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEcCH---------------HHHHHHHHHHhhhcc-CCChHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998876 455544432211111 1222222222222221 1133577788899999999999998
Q ss_pred C-CceeeeCCCcceEEEEEcCCCC
Q 018318 332 K-GYSLVTGGTENHLVLWDLRPLG 354 (358)
Q Consensus 332 ~-G~~~~~~~~~~~~~~v~~~~~~ 354 (358)
. |+++.. +..++.+|+++...+
T Consensus 326 ~~~~~~~~-~~~~~~~~~~~~~~~ 348 (407)
T 3nra_A 326 CEGVFART-PQAGSYLFPRLPKLA 348 (407)
T ss_dssp STTCBCCC-CSBSSEECCBCCCBS
T ss_pred CCCceecc-CCeeEEEEEeCCCCC
Confidence 8 888765 445677888876533
No 94
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.88 E-value=2.7e-21 Score=181.97 Aligned_cols=279 Identities=16% Similarity=0.121 Sum_probs=178.3
Q ss_pred cceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCC-CCCCccccccCC-h
Q 018318 32 RGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDP-TQWGVNVQPYSG-S 107 (358)
Q Consensus 32 ~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~-~~~~~~v~~~sG-t 107 (358)
+.+.+..+.+. .+|.|.+++.+.+......+|+ ......++++.+.+++++.+|++. ++ ..|++++| +
T Consensus 26 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~~~~~l~~~ia~~~~~~~g~~~~~~--~~v~~~~g~~ 97 (376)
T 2dou_A 26 GLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYC------LKSCTLPFLEEAARWYEGRYGVGLDPR--REALALIGSQ 97 (376)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCC------CHHHHHHHHHHHHHHHHHHHSCCCCTT--TSEEEESSHH
T ss_pred CEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCC------CCCCCHHHHHHHHHHHHHHhCCCCCCC--ccEEEcCCcH
Confidence 46777766543 4799999998776432111222 112345666555566666669862 11 02445555 6
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEE
Q 018318 108 PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC 187 (358)
Q Consensus 108 ~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~ 187 (358)
+|+..++.++++|||+|++..+.|.++.. .+...|..+ +.++.+ +++.+|++++++++.+ ++++|++
T Consensus 98 ~a~~~~~~~l~~~gd~vl~~~p~y~~~~~---------~~~~~g~~~--~~~~~~-~~~~~d~~~l~~~l~~-~~~~v~l 164 (376)
T 2dou_A 98 EGLAHLLLALTEPEDLLLLPEVAYPSYFG---------AARVASLRT--FLIPLR-EDGLADLKAVPEGVWR-EAKVLLL 164 (376)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCHHHHH---------HHHHTTCEE--EEECBC-TTSSBCGGGSCHHHHH-HEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEECCCCcHhHHH---------HHHHcCCEE--EEeeCC-CCCCCCHHHHHHhhcc-CceEEEE
Confidence 79999999999999999999988765431 223456544 444442 3456899999998864 6888888
Q ss_pred cCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C--cccEEEecCCccCC--CCCeeEEE
Q 018318 188 GGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E--YCHIVTTTTHKSLR--GPRAGMIF 255 (358)
Q Consensus 188 ~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~--~~d~~~~s~~K~l~--g~~gG~i~ 255 (358)
++++|+ ...| +++|.++|++||+++|+|++|+.+ ...+.....+ + +.+++++|+||+++ |.+.|+++
T Consensus 165 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 243 (376)
T 2dou_A 165 NYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQ-VYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFAL 243 (376)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG-BSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEE
T ss_pred CCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhc-ccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEe
Confidence 777665 3443 789999999999999999998643 2222111111 2 45688999999873 55679998
Q ss_pred EeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCce
Q 018318 256 YRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYS 335 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~ 335 (358)
+++ ++.+.+........ .+.+....+++..+++.. ...++...+++.++++++.+.|++. ++
T Consensus 244 ~~~---------------~~~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~ 305 (376)
T 2dou_A 244 GSE---------------EALARLERVKGVID-FNQYAGVLRMGVEALKTP-KEVVRGYARVYRERALGMAEALKGV-LS 305 (376)
T ss_dssp ECH---------------HHHHHHHHHHHHHC-CCSCHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHTTT-SE
T ss_pred cCH---------------HHHHHHHHHHHhcc-cCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 876 45554443221111 122334444444444331 2335677788899999999999988 77
Q ss_pred eeeCCCcceEEEEEcC
Q 018318 336 LVTGGTENHLVLWDLR 351 (358)
Q Consensus 336 ~~~~~~~~~~~~v~~~ 351 (358)
+.. +..++.+|+++.
T Consensus 306 ~~~-~~~~~~~~~~~~ 320 (376)
T 2dou_A 306 LLP-PRATMYLWGRLP 320 (376)
T ss_dssp ECC-CCBSSEEEEECC
T ss_pred ccC-CCeeEEEEEECC
Confidence 654 345667888874
No 95
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.88 E-value=1.2e-21 Score=186.76 Aligned_cols=280 Identities=15% Similarity=0.085 Sum_probs=178.5
Q ss_pred hcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChH
Q 018318 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (358)
Q Consensus 31 ~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~ 108 (358)
++.+.|..+... .++.|.+++ +.+.... .+|+. .....++++.+.+++.+.+|.+.+.- ..+++++|++
T Consensus 43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~-~~y~~------~~g~~~l~~~la~~~~~~~g~~~~~~-~v~~~~g~t~ 113 (409)
T 2gb3_A 43 VRIHHLNIGQPDLKTPEVFFERI-YENKPEV-VYYSH------SAGIWELREAFASYYKRRQRVDVKPE-NVLVTNGGSE 113 (409)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHTCCSS-CCCCC------TTCCHHHHHHHHHHHHHTSCCCCCGG-GEEEESHHHH
T ss_pred CCEEeccCCCCCCCCCHHHHHHH-HHHhcCC-CCCCC------CCCcHHHHHHHHHHHHHHhCCCCCHH-HEEEeCCHHH
Confidence 345666665443 478999998 7764321 22322 12234666566666666666432100 2344556678
Q ss_pred HHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCC-CCCCCCHHHHHHHHhhcCCcEEEE
Q 018318 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS-STGYIDYDKLEEKALDFRPKLIIC 187 (358)
Q Consensus 109 a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~id~~~l~~~l~~~~~~~v~~ 187 (358)
|+..++.+++++||+|++..+.|.++.. .+...|..+ +.++.+. +++.+ ++++++++++ ++++|++
T Consensus 114 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~---------~~~~~g~~~--~~v~~~~~~~~~~-~~~l~~~l~~-~~~~v~~ 180 (409)
T 2gb3_A 114 AILFSFAVIANPGDEILVLEPFYANYNA---------FAKIAGVKL--IPVTRRMEEGFAI-PQNLESFINE-RTKGIVL 180 (409)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCTHHHH---------HHHHHTCEE--EEEECCGGGTSCC-CTTGGGGCCT-TEEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchhHHH---------HHHHcCCEE--EEeccCCCCCCcc-HHHHHHhhCc-CCeEEEE
Confidence 9999999999999999999998876531 233456544 4444432 13344 8889888865 6888888
Q ss_pred cCCCCC--Cc---cchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---CcccEEEecCCccCC--CCCeeEEEEe
Q 018318 188 GGSAYP--RD---WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---EYCHIVTTTTHKSLR--GPRAGMIFYR 257 (358)
Q Consensus 188 ~~~~~~--~~---~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~~~d~~~~s~~K~l~--g~~gG~i~~~ 257 (358)
++++|+ .. .++++|.++|++||+++|+|++|+.+. ..+.....+ .+.|++++|+||+++ |.+.|+++++
T Consensus 181 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 259 (409)
T 2gb3_A 181 SNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIV-FRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITR 259 (409)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB-CSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECS
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccc-cCCCCCCccccCCCCEEEEecchhccCCccceEEEEEEC
Confidence 777664 33 358999999999999999999987542 222111112 256899999999984 3456999988
Q ss_pred CCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCcee-
Q 018318 258 KGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSL- 336 (358)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~- 336 (358)
++ ++.+.+........ +++....+++.++++. ....++...++..++++++.+.|++.|+++
T Consensus 260 ~~--------------~l~~~l~~~~~~~~--~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 322 (409)
T 2gb3_A 260 NE--------------ELISHAMKLAQGRL--APPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEHGLKRF 322 (409)
T ss_dssp CH--------------HHHHHHHHHHHHSC--CCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCB
T ss_pred cH--------------HHHHHHHHHHhccC--CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHcCceee
Confidence 72 24444443222221 3344444444444432 223456778888999999999999889887
Q ss_pred eeCCCcceEEEEEcC
Q 018318 337 VTGGTENHLVLWDLR 351 (358)
Q Consensus 337 ~~~~~~~~~~~v~~~ 351 (358)
.. +..+..+|+++.
T Consensus 323 ~~-~~~~~~~~~~~~ 336 (409)
T 2gb3_A 323 TK-PSGAFYITAELP 336 (409)
T ss_dssp CC-CSBSSEEEEECS
T ss_pred eC-CCeeEEEEEEeC
Confidence 54 455677888764
No 96
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.88 E-value=1.2e-22 Score=196.85 Aligned_cols=254 Identities=11% Similarity=0.050 Sum_probs=168.2
Q ss_pred HHHHHHHHhcCCCCCCCCccccccCC-hHHHHHHHHhhcCCCCe---EEEecCCCCccccccccccCCcccccccceeE-
Q 018318 81 LCRSRALQTFHLDPTQWGVNVQPYSG-SPANFAAYTAVLEPHDR---IMGLDLPSGGHLTHGYYTSGGKKISATSIYFE- 155 (358)
Q Consensus 81 ~~~~~la~~~g~~~~~~~~~v~~~sG-t~a~~~~l~a~~~~gd~---Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~- 155 (358)
.+++++++++|++++ .|++++| ++++..++.++++|||+ |++..++|++...... ..++..|..+.
T Consensus 115 ~l~~~la~~~g~~~~----~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~-----~~~~~~G~~~~~ 185 (465)
T 3e9k_A 115 SIVGLMKDIVGANEK----EIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIE-----SQLQLHGLNIEE 185 (465)
T ss_dssp HHHGGGHHHHTCCGG----GEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHH-----HHHHHTTCCHHH
T ss_pred HHHHHHHHHcCCCcC----CEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHH-----HHHHHcCCccee
Confidence 346899999999864 2445554 67999999999876655 9999998876431100 01223454321
Q ss_pred --EeecccCCCCCCCCHHHHHHHHhhc--CCcEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccC
Q 018318 156 --SLPYKVNSSTGYIDYDKLEEKALDF--RPKLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAA 229 (358)
Q Consensus 156 --~~~~~~~~~~~~id~~~l~~~l~~~--~~~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~ 229 (358)
+...+.+ +++.+|+++++++++++ ++++|++++++|+ ...|+++|.++|++||+++++|++|+.|...
T Consensus 186 ~~v~~~~~~-~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~----- 259 (465)
T 3e9k_A 186 SMRMIKPRE-GEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVE----- 259 (465)
T ss_dssp HEEEECCCT-TCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSC-----
T ss_pred eeEEEecCC-CCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcC-----
Confidence 1111222 35789999999999743 5788888876654 6789999999999999999999999877532
Q ss_pred CCCC--cccEEEecCCccC-CCCCe-eEEEEeCCCCC-CCC--CCCCCccccHHHHhhh---h-----cCCCCcCCCChh
Q 018318 230 NPFE--YCHIVTTTTHKSL-RGPRA-GMIFYRKGPKP-PKK--GQPEGAVYDFEDKINF---A-----VFPSLQGGPHNH 294 (358)
Q Consensus 230 ~~~~--~~d~~~~s~~K~l-~g~~g-G~i~~~~~~~~-~~~--~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~ 294 (358)
.++. ++|++++|+||++ +||.| |++++++++.+ +.+ .+-... .....+.. . ......++++..
T Consensus 260 ~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 337 (465)
T 3e9k_A 260 LYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGH--ELSTRFKMDNKLQLIPGVCGFRISNPPIL 337 (465)
T ss_dssp CCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGB--CHHHHTTCCSCCCBCSSGGGGCCSCCCHH
T ss_pred CchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCC--CCCcccccCCCcCcCCChHHhccCCccHH
Confidence 2232 7899999999998 47876 88888776432 211 110000 11111100 0 000113467778
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh-----------CCceeeeCCC---cceEEEEEcC
Q 018318 295 QIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG-----------KGYSLVTGGT---ENHLVLWDLR 351 (358)
Q Consensus 295 ~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-----------~G~~~~~~~~---~~~~~~v~~~ 351 (358)
.++++.+++..+...+++..+++..++++++.+.|++ .|+++..+.. .+.++++.+.
T Consensus 338 ~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~ 408 (465)
T 3e9k_A 338 LVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS 408 (465)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec
Confidence 8888888888765434678889999999999999988 6888876321 2556676653
No 97
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.88 E-value=6.5e-21 Score=180.38 Aligned_cols=263 Identities=14% Similarity=0.124 Sum_probs=172.0
Q ss_pred ccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh
Q 018318 38 ASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV 117 (358)
Q Consensus 38 a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~ 117 (358)
.+...+++++++++.+.+...+ +. ..+...+++ +.+++++|++. .+++++|++|+..++.++
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~--------~~-~~~~~~~l~----~~la~~~~~~~-----~i~~~sGt~a~~~al~~~ 69 (390)
T 3b8x_A 8 LASSTWDDLEYKAIQSVLDSKM--------FT-MGEYVKQYE----TQFAKTFGSKY-----AVMVSSGSTANLLMIAAL 69 (390)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTC--------CS-SCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHcCC--------CC-CChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHH
Confidence 3667789999999988775321 11 124445555 78999999874 377899999999999998
Q ss_pred -------cCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCC
Q 018318 118 -------LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGS 190 (358)
Q Consensus 118 -------~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~ 190 (358)
+++||+|+++.++|.+... .+...|. +++.++++++++.+|++++++++++ ++++|++++
T Consensus 70 ~~~~~~~~~~g~~Vi~~~~~~~~~~~---------~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~- 136 (390)
T 3b8x_A 70 FFTKKPRLKKGDEIIVPAVSWSTTYY---------PLQQYGL--RVKFVDIDINTLNIDIESLKEAVTD-STKAILTVN- 136 (390)
T ss_dssp TSSSSCSCCTTCEEEEESSSCHHHHH---------HHHHTTC--EEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEEC-
T ss_pred HhhhhcCCCCcCEEEECCCCcHHHHH---------HHHHcCC--EEEEEecCccccCcCHHHHHHHhCc-CCeEEEEEC-
Confidence 7899999999998876542 2334565 4455555544588999999999975 688887763
Q ss_pred CCCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC-cccEEEec--CCccCCCCCeeEEEEeCCCCCCCCCC
Q 018318 191 AYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTT--THKSLRGPRAGMIFYRKGPKPPKKGQ 267 (358)
Q Consensus 191 ~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~~~s--~~K~l~g~~gG~i~~~~~~~~~~~~~ 267 (358)
..+.+.|+++|.++|++||+++|+|++|+.|....+. .+. ..|+.++| .+|.+.++.||+++++++
T Consensus 137 ~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~---~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~-------- 205 (390)
T 3b8x_A 137 LLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNK---CAGTFGLMGTFSSFYSNHIATMEGGCIVTDDE-------- 205 (390)
T ss_dssp GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCSSSCEEEEESCH--------
T ss_pred CccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCc---ccccccceEEEEccCCCCCccCCceEEEeCCH--------
Confidence 3455689999999999999999999999987654221 111 23555544 345566677899998763
Q ss_pred CCCccccHHHHhhhhcCCC--------------------------CcCCCC--hhHHHHHHHHHHHhccHHHHHHHHHHH
Q 018318 268 PEGAVYDFEDKINFAVFPS--------------------------LQGGPH--NHQIGALAVALKQASTPAFKAYAKQVK 319 (358)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~--~~~~~al~~al~~~~~~~~~~~~~~~~ 319 (358)
++.+.+......+ ...+.+ ...+.+ ++++..+ +.++++.++.+
T Consensus 206 ------~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a-a~~l~~l--~~l~~~~~~~~ 276 (390)
T 3b8x_A 206 ------EIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSG-AIGIEQL--KKLPRFISVRR 276 (390)
T ss_dssp ------HHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHH-HHHHHHH--HHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHH-HHHHHHH--HHHHHHHHHHH
Confidence 2322221110000 000100 111221 2222222 34567788899
Q ss_pred HHHHHHHHHHhhC-CceeeeCC--CcceEEEEEcC
Q 018318 320 ANAVALGNYLTGK-GYSLVTGG--TENHLVLWDLR 351 (358)
Q Consensus 320 ~~~~~l~~~L~~~-G~~~~~~~--~~~~~~~v~~~ 351 (358)
++++++.+.|++. |+++.... ...+.+++.+.
T Consensus 277 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~ 311 (390)
T 3b8x_A 277 KNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIK 311 (390)
T ss_dssp HHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEEC
T ss_pred HHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEec
Confidence 9999999999987 88876422 22344666654
No 98
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.87 E-value=6.3e-22 Score=189.71 Aligned_cols=278 Identities=15% Similarity=0.117 Sum_probs=167.7
Q ss_pred ceeEec-cCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCC-hHHH
Q 018318 33 GIELIA-SENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSG-SPAN 110 (358)
Q Consensus 33 ~~~l~a-~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sG-t~a~ 110 (358)
.+.|.. +.+.+|+.|++++.+.+...+ +++...|..+... ..+.+.+++++++++|++++ .+++++| ++|+
T Consensus 19 ~~~Ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~la~~~g~~~~----~v~~~~g~t~a~ 91 (432)
T 3a9z_A 19 KVYMDYNATTPLEPEVIQAVTEAMKEAW--GNPSSSYVAGRKA-KDIINTARASLAKMIGGKPQ----DIIFTSGGTESN 91 (432)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHHCC--SCTTCSSHHHHHH-HHHHHHHHHHHHHHHTCCGG----GEEEESCHHHHH
T ss_pred cEEeeCCccCCCCHHHHHHHHHHHHHhc--CCCccCcHHHHHH-HHHHHHHHHHHHHHcCCCcC----eEEEeCChHHHH
Confidence 344443 345679999999988875433 4544333222122 23334677999999999753 2445554 7899
Q ss_pred HHHHHhhc--------CCCCeEEEecCCCCcccc-------cccc-ccCCcccccccceeEEeecccCCCCCCCCHHHHH
Q 018318 111 FAAYTAVL--------EPHDRIMGLDLPSGGHLT-------HGYY-TSGGKKISATSIYFESLPYKVNSSTGYIDYDKLE 174 (358)
Q Consensus 111 ~~~l~a~~--------~~gd~Vl~~~~~~~~~~~-------~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~ 174 (358)
..++.+++ ++||+|++..|.|.+... +... ..+....+..|.. ++.++.+.+++.+|+++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~--v~~v~~~~~~~~~d~~~l~ 169 (432)
T 3a9z_A 92 NLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAE--VTFVPVSKVNGQVEVEDIL 169 (432)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCE--EEEECCCTTTSSCCHHHHH
T ss_pred HHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcE--EEEEecCcccCCcCHHHHH
Confidence 99988875 589998888877654200 0000 0000001123544 4444544336789999999
Q ss_pred HHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHHhC----------CEEEEechhhhhhhhccccCCCCC--cccEEEe
Q 018318 175 EKALDFRPKLIICGGSAYP--RDWDYARFRAVADKCG----------ALLLCDMAHISGLVAAQEAANPFE--YCHIVTT 240 (358)
Q Consensus 175 ~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~g----------~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~ 240 (358)
+++++ ++++|++++++|+ ...|+++|.++|+++| +++|+|++|+.|.. +.++. ++|++++
T Consensus 170 ~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~-----~~~~~~~~~d~~~~ 243 (432)
T 3a9z_A 170 AAVRP-TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR-----RVDVEDLGVDFLTI 243 (432)
T ss_dssp HTCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS-----CCCHHHHCCSEEEE
T ss_pred HhccC-CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc-----ccChhhcCCCEEEE
Confidence 99875 6888888877654 6789999999999999 99999999976532 12222 6899999
Q ss_pred cCCccCCCCCeeEEEEeCCC-C-CCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHH
Q 018318 241 TTHKSLRGPRAGMIFYRKGP-K-PPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQV 318 (358)
Q Consensus 241 s~~K~l~g~~gG~i~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~ 318 (358)
|+||++ ||+.|+++++++. . .+.+. .. .. .... . ...++++...++++.++++.+. .++++..++.
T Consensus 244 s~~K~~-g~~~G~~~~~~~~~~~~~~~~---~~--~~--~~~~-~--~~~~~~~~~~~~a~~aal~~~~-~~~~~~~~~~ 311 (432)
T 3a9z_A 244 VGHKFY-GPRIGALYVRGVGKLTPLYPM---LF--GG--GQER-N--FRPGTENTPMIAGLGKAADLVS-ENCETYEAHM 311 (432)
T ss_dssp EGGGTT-CCSCEEEEETTBTTTBCCCCS---CC--SS--CGGG-G--TSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred ehhHhc-CCcceEEEEccccccCCcCce---ee--cC--Cccc-c--ccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHHH
Confidence 999986 6889999998752 1 01000 00 00 0000 0 1123455666666667777653 3567888899
Q ss_pred HHHHHHHHHHHhhC-Cceee
Q 018318 319 KANAVALGNYLTGK-GYSLV 337 (358)
Q Consensus 319 ~~~~~~l~~~L~~~-G~~~~ 337 (358)
.++++++.+.|++. |+++.
T Consensus 312 ~~~~~~l~~~L~~~~g~~~~ 331 (432)
T 3a9z_A 312 RDIRDYLEERLEAEFGKRIH 331 (432)
T ss_dssp HHHHHHHHHHHHHHHGGGEE
T ss_pred HHHHHHHHHHHHhccCCcEE
Confidence 99999999999884 76554
No 99
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.87 E-value=1.7e-22 Score=190.11 Aligned_cols=246 Identities=12% Similarity=0.062 Sum_probs=166.0
Q ss_pred CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh-cCC
Q 018318 42 FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV-LEP 120 (358)
Q Consensus 42 ~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~-~~~ 120 (358)
.+++++++++.+.+...+ + ...+...++| +.+++++|.+. .++++|||+|+..++.++ +++
T Consensus 14 ~~~~~~~~a~~~~~~~~~---~------~~~~~~~~l~----~~la~~~~~~~-----~i~~~sgt~al~~~l~~l~~~~ 75 (373)
T 3frk_A 14 EIEYEIKFKFEEIYKRNW---F------ILGDEDKKFE----QEFADYCNVNY-----CIGCGNGLDALHLILKGYDIGF 75 (373)
T ss_dssp HHHHHHHHHHHHHHHHTC---C------SSSHHHHHHH----HHHHHHHTSSE-----EEEESCHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHHHHCCC---c------cCCchHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCC
Confidence 346788888877664421 1 1224455565 78999999874 377788999999999999 999
Q ss_pred CCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHH
Q 018318 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYAR 200 (358)
Q Consensus 121 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~ 200 (358)
||+|+++.++|.+... .+...|.. +++++++++++.+|++++++++++ ++++|++.+ .+|...|+++
T Consensus 76 gd~Vi~~~~~~~~~~~---------~~~~~g~~--~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~n-~~G~~~~l~~ 142 (373)
T 3frk_A 76 GDEVIVPSNTFIATAL---------AVSYTGAK--PIFVEPDIRTYNIDPSLIESAITE-KTKAIIAVH-LYGQPADMDE 142 (373)
T ss_dssp TCEEEEETTSCTHHHH---------HHHHHSCE--EEEECEETTTTEECGGGTGGGCCT-TEEEEEEEC-CTTCCCCHHH
T ss_pred cCEEEECCCCcHHHHH---------HHHHcCCE--EEEEeccccccCcCHHHHHHhcCC-CCeEEEEEC-CCcCcccHHH
Confidence 9999999998876431 23345654 455555545688999999999875 788887553 4677789999
Q ss_pred HHHHHHHhCCEEEEechhhhhhhhccccCCCCC-cccEEEec--CCccCCC-CCeeEEEEeCCCCCCCCCCCCCccccHH
Q 018318 201 FRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTT--THKSLRG-PRAGMIFYRKGPKPPKKGQPEGAVYDFE 276 (358)
Q Consensus 201 i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~~~s--~~K~l~g-~~gG~i~~~~~~~~~~~~~~~~~~~~~~ 276 (358)
|.++|++||+++|+|++|+.|....+. .+. ..|++++| .||++++ +.||+++++++ ++.
T Consensus 143 i~~l~~~~~~~li~D~a~~~g~~~~~~---~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~--------------~~~ 205 (373)
T 3frk_A 143 IKRIAKKYNLKLIEDAAQAHGSLYKGM---KVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDK--------------DLA 205 (373)
T ss_dssp HHHHHHHHTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCCSSSCEEEEESCH--------------HHH
T ss_pred HHHHHHHcCCEEEEECCcccCCEECCE---eccccccEEEEeCcCCCccCccceeEEEEeCCH--------------HHH
Confidence 999999999999999999887653221 122 36888888 5599977 57888888764 344
Q ss_pred HHhhhhcCCCC-------cCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCcee
Q 018318 277 DKINFAVFPSL-------QGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSL 336 (358)
Q Consensus 277 ~~~~~~~~~~~-------~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~ 336 (358)
+.+......+. ..+.+ ..+..+.+++.......++.+.++.+++++++.+.|++.++.+
T Consensus 206 ~~~~~~~~~g~~~~~~~~~~g~~-~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 271 (373)
T 3frk_A 206 EKIKALSNYGSEKKYHHIYKGFN-SRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPNVII 271 (373)
T ss_dssp HHHHHHHBTTCSBTTBCCSCCCB-CCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTEEC
T ss_pred HHHHHHHhcCcccCCcccccccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEe
Confidence 43332211110 00000 0111222233222223456778888999999999999877554
No 100
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.87 E-value=5.6e-21 Score=183.29 Aligned_cols=284 Identities=13% Similarity=0.102 Sum_probs=182.5
Q ss_pred hcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCC--CCCCCccccccCC
Q 018318 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD--PTQWGVNVQPYSG 106 (358)
Q Consensus 31 ~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~--~~~~~~~v~~~sG 106 (358)
++.+.|..+.+. +++.|++++.+.+......+|+.. ....++++.+.+++.+.+|.+ .+ ..+++++|
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr~~la~~~~~~~g~~~~~~---~i~~t~g~ 114 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNL------DGLPELKQEASRFAKLFVNIDIPAR---ACVPTVGS 114 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGG---GEEEESHH
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCC------CChHHHHHHHHHHHHHhhCCCCCcc---cEEEeCCH
Confidence 356777766543 479999999887753221233321 112356555556666555543 32 23444555
Q ss_pred hHHHHHHHHhhc--CCCC--eEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCC
Q 018318 107 SPANFAAYTAVL--EPHD--RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRP 182 (358)
Q Consensus 107 t~a~~~~l~a~~--~~gd--~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~ 182 (358)
++|+..++.+++ ++|| +|++..+.|.++.. .+...|..+..+++ +++++.+|++++++++++.++
T Consensus 115 t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~---------~~~~~g~~~~~v~~--~~~~~~~d~~~l~~~l~~~~~ 183 (437)
T 3g0t_A 115 MQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKL---------QCRILGQKFESFDL--FEYRGEKLREKLESYLQTGQF 183 (437)
T ss_dssp HHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHH---------HHHHHTCCCEEEEG--GGGCTTHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHH---------HHHHcCCEEEEEee--cCCCCccCHHHHHHHHhcCCc
Confidence 779999999998 9999 99999988765431 23445655444444 333567899999999955578
Q ss_pred cEEEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCC--------CC---CcccEEEecCCccC
Q 018318 183 KLIICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAAN--------PF---EYCHIVTTTTHKSL 246 (358)
Q Consensus 183 ~~v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~--------~~---~~~d~~~~s~~K~l 246 (358)
++|++++++|+ ...+ +++|.++|++||+++|+|++|+.... .+..+. .+ .+.+++++|+||++
T Consensus 184 ~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 262 (437)
T 3g0t_A 184 CSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDF-RKDYSHPGEPLYQPSVANYTDNYILALSSSKAF 262 (437)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCT-TSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT
T ss_pred eEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhccc-CCCcCcccccchhhccCCCCCcEEEEEcCccCC
Confidence 99888777766 3444 78899999999999999999864322 121111 11 14568999999986
Q ss_pred C--CCCeeEEEEeCCCCCCCCCCCCCccccHHH-H-----------------hhhhcCCCCcCCCChhHHHHHHHHHHHh
Q 018318 247 R--GPRAGMIFYRKGPKPPKKGQPEGAVYDFED-K-----------------INFAVFPSLQGGPHNHQIGALAVALKQA 306 (358)
Q Consensus 247 ~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~al~~al~~~ 306 (358)
+ |.+.|+++++++ +.+ . +....... ..+++....+++..++...
T Consensus 263 ~~~G~r~G~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~ 326 (437)
T 3g0t_A 263 SYAGQRIGVLMISGK---------------LYEREYPDLEESFGRLRFGEALSSSALYAL-SSGATHSAQWGMAAMLKAC 326 (437)
T ss_dssp SCGGGCCEEEEECHH---------------HHHCBCGGGHHHHSCSBHHHHHHTTHHHHH-HSSSCHHHHHHHHHHHHHH
T ss_pred CCccceeEEEEECHH---------------HhhhhhhcccccccccchhHHHHHHHHhhh-cCCCCHHHHHHHHHHHhCc
Confidence 3 456699998763 333 3 32211110 1223444444445555443
Q ss_pred cc--HHHHHHHHHHHHHHHHHHHHHhhCCceee------eCCCcceEEEEEcC
Q 018318 307 ST--PAFKAYAKQVKANAVALGNYLTGKGYSLV------TGGTENHLVLWDLR 351 (358)
Q Consensus 307 ~~--~~~~~~~~~~~~~~~~l~~~L~~~G~~~~------~~~~~~~~~~v~~~ 351 (358)
.. ..++...+++.++++++.+.|++.|+++. .++..++.+|+++.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 379 (437)
T 3g0t_A 327 NDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYK 379 (437)
T ss_dssp HTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEET
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecC
Confidence 11 01567888899999999999999999887 32356778898875
No 101
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.87 E-value=4.4e-21 Score=183.88 Aligned_cols=283 Identities=17% Similarity=0.090 Sum_probs=181.9
Q ss_pred ceeEeccC-C-----CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC-----CCCCCCCccc
Q 018318 33 GIELIASE-N-----FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH-----LDPTQWGVNV 101 (358)
Q Consensus 33 ~~~l~a~~-~-----~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g-----~~~~~~~~~v 101 (358)
.+.|..+. + ++++.|.+++.+.+......+|... ....+++ +.++++++ ++.+ ..+
T Consensus 56 ~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr----~~la~~~~~~~~~~~~~---~v~ 122 (427)
T 3dyd_A 56 MISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPS------IGFLSSR----EEIASYYHCPEAPLEAK---DVI 122 (427)
T ss_dssp CEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCT------TCCHHHH----HHHHHHHCBTTBCCCGG---GEE
T ss_pred EEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCC------CCcHHHH----HHHHHHHhhcCCCCChH---HEE
Confidence 46776543 2 5689999999887754322233221 2233454 67777777 4443 234
Q ss_pred cccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcC
Q 018318 102 QPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFR 181 (358)
Q Consensus 102 ~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~ 181 (358)
++++|++|+..++.++++|||+|++..|.|.++.. .+...|..+..+++.- +.++.+|++++++++++ +
T Consensus 123 ~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~---------~~~~~g~~~~~~~~~~-~~~~~~d~~~l~~~l~~-~ 191 (427)
T 3dyd_A 123 LTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKT---------LAESMGIEVKLYNLLP-EKSWEIDLKQLEYLIDE-K 191 (427)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH---------HHHHTTCEEEEEEEEG-GGTTEECHHHHHSSCCT-T
T ss_pred EecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH---------HHHHcCCEEEEEeccc-ccCCCCCHHHHHHHhcc-C
Confidence 45556789999999999999999999998876431 2344565544444421 13567999999999865 6
Q ss_pred CcEEEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--ccc---EEEecCCccC--CCC
Q 018318 182 PKLIICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCH---IVTTTTHKSL--RGP 249 (358)
Q Consensus 182 ~~~v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d---~~~~s~~K~l--~g~ 249 (358)
+++|++++++|+ ...+ +++|+++|++||+++|+|++|. ++...+....++. +.+ ++++|+||.+ +|.
T Consensus 192 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~-~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~ 270 (427)
T 3dyd_A 192 TACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYG-DMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGW 270 (427)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTT-TCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGG
T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCch-hhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCc
Confidence 788888777765 4566 9999999999999999999975 4333322122221 222 6788999985 455
Q ss_pred CeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 018318 250 RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL 329 (358)
Q Consensus 250 ~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 329 (358)
+.|+++++++.. ... .++.+.+...... ..+++....+++..++.......+.+..+++.++++++.+.|
T Consensus 271 riG~~~~~~~~~-------~~~-~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L 340 (427)
T 3dyd_A 271 RLGWILIHDRRD-------IFG-NEIRDGLVKLSQR--ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGAL 340 (427)
T ss_dssp CCEEEEEECSTT-------SSH-HHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCcch-------hhH-HHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999876310 000 0233333322111 123444555555566654333345778888999999999999
Q ss_pred hhC-CceeeeCCCcceEEEEEcC
Q 018318 330 TGK-GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 330 ~~~-G~~~~~~~~~~~~~~v~~~ 351 (358)
++. |+++.. +..+..+|+.+.
T Consensus 341 ~~~~g~~~~~-p~~g~~~~~~l~ 362 (427)
T 3dyd_A 341 AAIPGLRPVR-PSGAMYLMVGIE 362 (427)
T ss_dssp HHSTTEEEEC-CSBTTEEEEEEC
T ss_pred hcCCCceecC-CCeeEEEEEecC
Confidence 998 888765 455667777764
No 102
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.87 E-value=5.6e-21 Score=186.80 Aligned_cols=277 Identities=13% Similarity=0.068 Sum_probs=177.1
Q ss_pred CCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh---
Q 018318 41 NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV--- 117 (358)
Q Consensus 41 ~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~--- 117 (358)
+..++.|++++.....+. +.. .+...+...++|+.+++++++++|++..+ ..+++++||+|+..++.++
T Consensus 110 ~~~~~~v~~~~~~~~~n~----~~~--~~~~~~~~~~le~~~~~~la~~~g~~~~~--~~~~t~ggt~a~~~al~~ar~~ 181 (497)
T 2qma_A 110 PPLMPAVAAEAMIAALNQ----SMD--SWDQASSATYVEQKVVNWLCDKYDLSEKA--DGIFTSGGTQSNQMGLMLARDW 181 (497)
T ss_dssp CCBHHHHHHHHHHHHHCC----CTT--CGGGCHHHHHHHHHHHHHHHHHTTCCTTC--EEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhcc----ccc--chhhChHHHHHHHHHHHHHHHHhCCCCCC--CeEEcCCchHHHHHHHHHHHHH
Confidence 455788888876554321 111 12233567789999999999999996422 2456677788999888773
Q ss_pred -c---------CC------CC-eEEEecCCCCccccccccccCCccccccccee-EEeecccCCCCCCCCHHHHHHHHhh
Q 018318 118 -L---------EP------HD-RIMGLDLPSGGHLTHGYYTSGGKKISATSIYF-ESLPYKVNSSTGYIDYDKLEEKALD 179 (358)
Q Consensus 118 -~---------~~------gd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~id~~~l~~~l~~ 179 (358)
+ ++ || .|++....|.++. +.+...|.+. .++.++++ +++.+|+++|++++++
T Consensus 182 ~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~---------~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~ 251 (497)
T 2qma_A 182 IADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ---------KSASWMGLGEKAVMTVDAN-ADGTMDITKLDEVIAQ 251 (497)
T ss_dssp HHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHH---------HHHHHTTSCGGGEEEECBC-TTSSBCGGGHHHHHHH
T ss_pred HHHhhcccchhhcccccccCCeEEEECCCchHHHH---------HHHHHcCCCcccEEEEecC-CCCcCCHHHHHHHHHH
Confidence 2 13 46 7888877776543 1233344321 23444544 4688999999999976
Q ss_pred c---CCc--EEEEcCCC--CCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---CcccEEEecCCccCCCC
Q 018318 180 F---RPK--LIICGGSA--YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---EYCHIVTTTTHKSLRGP 249 (358)
Q Consensus 180 ~---~~~--~v~~~~~~--~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~~~d~~~~s~~K~l~g~ 249 (358)
. .++ +|+++.++ +|...|+++|+++|++||+++|+|++|+.+....+ ....+ .++|++++|+|||+++|
T Consensus 252 ~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p 330 (497)
T 2qma_A 252 AKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQT 330 (497)
T ss_dssp HHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCC
T ss_pred HHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCC
Confidence 3 233 56654333 46788999999999999999999999876654322 11112 36799999999999887
Q ss_pred Ce-eEEEEeCCCCCCCCCCCCCccccHHHHhhhhc---C------CC-----CcCCCChhHHHHHHHHHHHhccHHHHHH
Q 018318 250 RA-GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAV---F------PS-----LQGGPHNHQIGALAVALKQASTPAFKAY 314 (358)
Q Consensus 250 ~g-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~-----~~~~~~~~~~~al~~al~~~~~~~~~~~ 314 (358)
.+ |+++++++. ..+.+.... . +. ...+... ...+++++++.+..++++++
T Consensus 331 ~~~G~l~~~~~~--------------~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~-~al~~~~~l~~lg~~g~~~~ 395 (497)
T 2qma_A 331 ISCGALLVNDKS--------------NFKFLLHHADYLNREHDELPNLVDKSIATTKRF-DALKVFMTMQNVGPKALGDM 395 (497)
T ss_dssp SSCEEEEESCGG--------------GGGGGCC--------------------CCSCCC-THHHHHHHHHHTCHHHHHHH
T ss_pred cceEEEEEeCHH--------------HHHHhcCCchhcCCccccCCCccccCCCCCCch-hHHHHHHHHHHhCHHHHHHH
Confidence 65 888887641 111110000 0 00 0001111 12234566776655567888
Q ss_pred HHHHHHHHHHHHHHHhhC-CceeeeCCCcceEEEEEcCC
Q 018318 315 AKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 315 ~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~v~~~~ 352 (358)
+++..+++++|++.|++. |++++.+ ....++++.+.+
T Consensus 396 ~~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~v~f~~~~ 433 (497)
T 2qma_A 396 YDHLLAQTLEVADMIRTNDQFELLAE-PSLSTVLFRATH 433 (497)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEECSC-CSSSEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEcC-CCceEEEEEEcC
Confidence 999999999999999986 8988643 344567776654
No 103
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.7e-21 Score=185.53 Aligned_cols=301 Identities=12% Similarity=0.072 Sum_probs=193.1
Q ss_pred cchHHHHHHHHHHH--------HhhcceeEeccCC--CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHH
Q 018318 15 VDPEIHDLIEKEKR--------RQCRGIELIASEN--FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRS 84 (358)
Q Consensus 15 ~~~~~~~~~~~~~~--------~~~~~~~l~a~~~--~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~ 84 (358)
++++.+..+.+... ...+.+.|..+.. ..|+.|.+++.+.+.......|+.. ....++++.+.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~------~g~~~lr~~ia~ 106 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPT------RGRPSLINSLIK 106 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCT------TCCHHHHHHHHH
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCC------CCCHHHHHHHHH
Confidence 44556666655442 2235667766543 2478999998877653111123221 122356555567
Q ss_pred HHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCC
Q 018318 85 RALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS 164 (358)
Q Consensus 85 ~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 164 (358)
++.+.+|.+.+. ...+++++|++|+..++.++++|||+|++..|.|.++.. .+...|..+..+++ +.+
T Consensus 107 ~l~~~~g~~~~~-~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---------~~~~~g~~~~~v~~--~~~ 174 (447)
T 3b46_A 107 LYSPIYNTELKA-ENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIP---------NIELCGGKVVYVPI--NPP 174 (447)
T ss_dssp HHTTTTTSCCCG-GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTCEEEEEEE--ECC
T ss_pred HHHHhcCCCCCh-hhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHH---------HHHHcCCEEEEEeC--CCc
Confidence 777667754310 012334445789999999999999999999998876531 23445654444443 322
Q ss_pred -----------CCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Cc---cchHHHHHHHHHhCCEEEEechhhhhhhhcccc
Q 018318 165 -----------TGYIDYDKLEEKALDFRPKLIICGGSAYP--RD---WDYARFRAVADKCGALLLCDMAHISGLVAAQEA 228 (358)
Q Consensus 165 -----------~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~---~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~ 228 (358)
++.+|++++++++.+ ++++|++++++|| .. .++++|.++|++||+++|+|++|.. +.+.+..
T Consensus 175 ~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~-~~~~g~~ 252 (447)
T 3b46_A 175 KELDQRNTRGEEWTIDFEQFEKAITS-KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEH-LYFTDSF 252 (447)
T ss_dssp GGGGTSCBCSTTSEECHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCSSCC
T ss_pred cccccccccccCcccCHHHHHHhhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchh-cccCCCC
Confidence 357999999999864 7888888877765 33 3689999999999999999999763 3332211
Q ss_pred C--CCC--C--cccEEEecCCccCC--CCCeeEEEE-eCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHH
Q 018318 229 A--NPF--E--YCHIVTTTTHKSLR--GPRAGMIFY-RKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGAL 299 (358)
Q Consensus 229 ~--~~~--~--~~d~~~~s~~K~l~--g~~gG~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 299 (358)
. ..+ + +.++++.|+||+++ |.+.|++++ ++ ++.+.+........ .+.+....+++
T Consensus 253 ~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~---------------~l~~~l~~~~~~~~-~~~~~~~~~a~ 316 (447)
T 3b46_A 253 TRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNA---------------ELLSYAAKAHTRIC-FASPSPLQEAC 316 (447)
T ss_dssp CCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCH---------------HHHHHHHHHHHHHT-SSCCHHHHHHH
T ss_pred cCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCH---------------HHHHHHHHHHhhcc-CCCChHHHHHH
Confidence 1 112 1 57899999999874 667899999 65 45444433211111 12344444455
Q ss_pred HHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcCC
Q 018318 300 AVALKQAS-TPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 300 ~~al~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~~ 352 (358)
.++++... ...++...+++.++++++.+.|++.|+++.. +..++.+|+++..
T Consensus 317 ~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~ 369 (447)
T 3b46_A 317 ANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTA-PEGTYFVLVDFSK 369 (447)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEEC-CSBSSEEEEECTT
T ss_pred HHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecC-CCeeEEEEEeccc
Confidence 55665432 1234677888999999999999998998765 5667889999864
No 104
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.87 E-value=2.3e-21 Score=184.45 Aligned_cols=304 Identities=16% Similarity=0.078 Sum_probs=184.7
Q ss_pred cccccccchHHHHHHH---HHHHHhhcceeEeccCC-----CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHH
Q 018318 9 NSSLETVDPEIHDLIE---KEKRRQCRGIELIASEN-----FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIEN 80 (358)
Q Consensus 9 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~a~~~-----~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~ 80 (358)
++++++++++....+. +.....++.+.+..+.+ ..++.+.+++.+.+.... .+|+. .....++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~------~~g~~~l~~ 85 (406)
T 1xi9_A 13 SKRALSVEYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-NYYGD------SEGLPELRK 85 (406)
T ss_dssp CHHHHTCCC-------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-CSCCC------TTCCHHHHH
T ss_pred HHHHhcCChhHHHHHHHHHHHHHcCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCcHHHHH
Confidence 4555666665443333 11112234566666544 357899999887764322 12322 122346665
Q ss_pred HHHHHHHHhcCCC--CCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEee
Q 018318 81 LCRSRALQTFHLD--PTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLP 158 (358)
Q Consensus 81 ~~~~~la~~~g~~--~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 158 (358)
.+.+++.+.+|.. ++ ..+++++|++|+..++.+++++||+|++..+.|.++.. .+...|..+. .
T Consensus 86 ~la~~l~~~~g~~~~~~---~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~---------~~~~~g~~~~--~ 151 (406)
T 1xi9_A 86 AIVEREKRKNGVDITPD---DVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTG---------LVKFYGGKPV--E 151 (406)
T ss_dssp HHHHHHHHHHCCCCCGG---GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH---------HHHHTTCEEE--E
T ss_pred HHHHHHHHhcCCCCCHH---HEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHH---------HHHHcCCEEE--E
Confidence 5566666666543 32 22444555789999999999999999999998865431 2234565444 4
Q ss_pred cccCC-CCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC
Q 018318 159 YKVNS-STGYIDYDKLEEKALDFRPKLIICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF 232 (358)
Q Consensus 159 ~~~~~-~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~ 232 (358)
++.+. +++.+|++++++++++ ++++|++++++|+ ... ++++|.++|++||+++|+|++|+.+. ..+. ..++
T Consensus 152 v~~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~-~~~~-~~~~ 228 (406)
T 1xi9_A 152 YRTIEEEDWQPDIDDIRKKITD-RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMT-YEGE-HISP 228 (406)
T ss_dssp EEEEGGGTSEECHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCB-SSSC-CCCH
T ss_pred eecCCCcCCcCCHHHHHHhhCc-CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccc-cCCC-CCCH
Confidence 44432 2456899999999975 6888888776655 333 49999999999999999999986533 2211 1111
Q ss_pred ----Ccc-cEEEecCCccCC--CCCeeEEE--EeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHH
Q 018318 233 ----EYC-HIVTTTTHKSLR--GPRAGMIF--YRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAL 303 (358)
Q Consensus 233 ----~~~-d~~~~s~~K~l~--g~~gG~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al 303 (358)
.+. +++++|+||+++ |.+.|+++ .+++. . .++.+.+....... .+++....+++.+++
T Consensus 229 ~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~---------~--~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l 295 (406)
T 1xi9_A 229 GSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENK---------L--SEVREAIDRLARIR--LCPNTPAQFAAIAGL 295 (406)
T ss_dssp HHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCT---------T--HHHHHHHHHHHHHT--CCSCSHHHHHHHHHH
T ss_pred HHcCCCceEEEEeccccccCCCccEEEEEEEecCchh---------H--HHHHHHHHHHHHhh--cCCCHHHHHHHHHHH
Confidence 145 789999999984 44568888 65510 0 01333333221111 223334444555555
Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhhC-CceeeeCCCcceEEEEEcC
Q 018318 304 KQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~v~~~ 351 (358)
+.. .+.++...+++.++++++.+.|++. |+++.. +..+..+|+++.
T Consensus 296 ~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~ 342 (406)
T 1xi9_A 296 TGP-MDYLKEYMKKLKERRDYIYKRLNEIPGISTTK-PQGAFYIFPKIE 342 (406)
T ss_dssp HSC-CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC-CCBSSEECCEEC
T ss_pred hCC-cHHHHHHHHHHHHHHHHHHHHHHhCCCCeeec-CCeeEEEEEecC
Confidence 432 2345777888899999999999987 888764 345566777664
No 105
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.87 E-value=2e-21 Score=185.16 Aligned_cols=282 Identities=14% Similarity=0.116 Sum_probs=173.7
Q ss_pred cCCCCCHHHHHHHhcccccCCCCCCCCC--CCCCC-chhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHH
Q 018318 39 SENFTSFAVIEALGSALTNKYSEGMPGN--RYYGG-NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYT 115 (358)
Q Consensus 39 ~~~~~~~~V~~a~~~~~~~~~~~g~~~~--~~~~~-~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~ 115 (358)
+.+..|+.|.+++.+.+...++ ++.. .+..+ .+... ++++++++++|+++++ .+++++|++++..++.
T Consensus 36 ~~~~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~~----~l~~~la~~~g~~~~~---v~~~~g~t~al~~al~ 106 (416)
T 1qz9_A 36 SLGARPVAALARAQAVIAEEWG--NGLIRSWNSAGWRDLSE----RLGNRLATLIGARDGE---VVVTDTTSINLFKVLS 106 (416)
T ss_dssp TSCCCBTTHHHHHHHHHHTCCC--CCGGGHHHHTSGGGHHH----HHHHHHHTTTTCCTTS---EEECSCHHHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHHHHHHHh--ccCccccchhhHHHHHH----HHHHHHHHHcCCCccc---EEEeCChhHHHHHHHH
Confidence 3456688999999887754332 2211 11001 12222 4558999999997532 2344455668877887
Q ss_pred hhc------CCCCeEEE-ecCCCCccccccccccCCcccccc--cceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEE
Q 018318 116 AVL------EPHDRIMG-LDLPSGGHLTHGYYTSGGKKISAT--SIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLII 186 (358)
Q Consensus 116 a~~------~~gd~Vl~-~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~ 186 (358)
+++ ++||+|++ ..+.|+++..... ...... |. +++.++. ++++++++.+ ++++|+
T Consensus 107 ~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~-----~~~~~~~~g~--~~~~v~~--------~~~l~~~i~~-~~~~v~ 170 (416)
T 1qz9_A 107 AALRVQATRSPERRVIVTETSNFPTDLYIAE-----GLADMLQQGY--TLRLVDS--------PEELPQAIDQ-DTAVVM 170 (416)
T ss_dssp HHHHHHHHHSTTCCEEEEETTSCHHHHHHHH-----HHHHHHCSSC--EEEEESS--------GGGHHHHCST-TEEEEE
T ss_pred hhcccccccCCCCcEEEEcCCCCCchHHHHH-----HHHHHhcCCc--eEEEeCc--------HHHHHHHhCC-CceEEE
Confidence 765 89997554 4556664321100 000112 43 3444431 7889998865 788888
Q ss_pred EcCCCC--CCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccC-CCCCe-eEEEEeCCC
Q 018318 187 CGGSAY--PRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSL-RGPRA-GMIFYRKGP 260 (358)
Q Consensus 187 ~~~~~~--~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l-~g~~g-G~i~~~~~~ 260 (358)
++++++ |...|+++|.++|++||+++|+|++|+.|... .++. ++|++++|+||++ +|+++ |+++++++.
T Consensus 171 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~-----~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~ 245 (416)
T 1qz9_A 171 LTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP-----VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQL 245 (416)
T ss_dssp EESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC-----CCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTT
T ss_pred EeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcC-----CChhhcCCCEEEecCcccCCCCCCCeEEEEECHHH
Confidence 887665 46779999999999999999999999865431 2232 6899999999997 56788 999998865
Q ss_pred CC-CCCC--CC-CCc-cccHHHHhh--hhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-
Q 018318 261 KP-PKKG--QP-EGA-VYDFEDKIN--FAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK- 332 (358)
Q Consensus 261 ~~-~~~~--~~-~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 332 (358)
.+ +.+. +. ... ..++..... ........++++...++++.++++.+...++++..++..++++++.+.|++.
T Consensus 246 ~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 325 (416)
T 1qz9_A 246 CDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRC 325 (416)
T ss_dssp TTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 32 2210 00 000 000000000 0000011234566667777778877653456788899999999999999986
Q ss_pred ---CceeeeCCC---cceEEEEEc
Q 018318 333 ---GYSLVTGGT---ENHLVLWDL 350 (358)
Q Consensus 333 ---G~~~~~~~~---~~~~~~v~~ 350 (358)
|+++..+.. ..+.+|+.+
T Consensus 326 ~~~g~~~~~~~~~~~~~~~~~~~~ 349 (416)
T 1qz9_A 326 AAHELTLVTPREHAKRGSHVSFEH 349 (416)
T ss_dssp TTSCCEECSCSSGGGBCSEEEEEC
T ss_pred cCCCeEEeCCCCHHHcCCEEEEec
Confidence 898875321 356678775
No 106
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.87 E-value=3.9e-20 Score=179.71 Aligned_cols=280 Identities=14% Similarity=0.091 Sum_probs=169.4
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh----c
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV----L 118 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~----~ 118 (358)
..|.+.+++...+. .+ ++.... ...+...++++++++++++++|++. ..+++++|++|+..++.++ .
T Consensus 78 ~~p~v~~~~~~~~~-~~---~~~~~~-~~~~g~~~l~~~l~~~la~~~g~~~----~~~~~~ggt~a~~~al~~~~~~~~ 148 (474)
T 1wyu_B 78 YNPKLHEEAARLFA-DL---HPYQDP-RTAQGALRLMWELGEYLKALTGMDA----ITLEPAAGAHGELTGILIIRAYHE 148 (474)
T ss_dssp CCCHHHHHHHHTTS-SC---CTTSCG-GGCHHHHHHHHHHHHHHHHHHTCSE----EECCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-hc---CCCCch-hhChHHHHHHHHHHHHHHHHHCCCc----eeecChHHHHHHHHHHHHHHHHHH
Confidence 35777777765421 12 111110 0123444666677899999999986 2345566778888766554 3
Q ss_pred CCCC-----eEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCC-C
Q 018318 119 EPHD-----RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA-Y 192 (358)
Q Consensus 119 ~~gd-----~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~-~ 192 (358)
++|| +|+++.+.|+++.. .+...|..+ +.++.+ +++.+|+++|++++.+ ++++|++++++ +
T Consensus 149 ~~Gd~~~r~~Vlv~~~~h~~~~~---------~~~~~G~~v--v~v~~~-~~~~~d~~~L~~~i~~-~t~~v~~~~pn~~ 215 (474)
T 1wyu_B 149 DRGEGRTRRVVLVPDSAHGSNPA---------TASMAGYQV--REIPSG-PEGEVDLEALKRELGP-HVAALMLTNPNTL 215 (474)
T ss_dssp HTTCTTTCCEEEEETTSCTHHHH---------HHHHTTCEE--EEECBC-TTSSBCHHHHHHHCST-TEEEEEECSSCTT
T ss_pred hcCCccCCCEEEEeCCcChhhHH---------HHHHCCCEE--EEecCC-CCCCcCHHHHHHhhCC-CceEEEEECCCCC
Confidence 5888 99999988876541 234566544 444544 3688999999999975 67888887664 3
Q ss_pred CCc-cchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC-cccEEEecCCccCCCC------CeeEEEEeCCCCC-C
Q 018318 193 PRD-WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTHKSLRGP------RAGMIFYRKGPKP-P 263 (358)
Q Consensus 193 ~~~-~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~~~s~~K~l~g~------~gG~i~~~~~~~~-~ 263 (358)
|.. .++++|+++|++||+++|+|++|+.+... .. .+.. ++|++++|+||+|++| +.|++++++++.+ +
T Consensus 216 G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g--~~-~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l 292 (474)
T 1wyu_B 216 GLFERRILEISRLCKEAGVQLYYDGANLNAIMG--WA-RPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYL 292 (474)
T ss_dssp SCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTT--TC-CHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGC
T ss_pred cccCCCHHHHHHHHHHcCCEEEEeCchhhhhcc--CC-CcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhC
Confidence 455 68999999999999999999999765431 11 1112 7899999999998655 4699999875321 1
Q ss_pred C-C----CCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeee
Q 018318 264 K-K----GQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 338 (358)
Q Consensus 264 ~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~ 338 (358)
. + .+.... ..+ . ..........+..+....++....+..+..+++.+..++..++++++.+.|++.|+++..
T Consensus 293 ~~~~~~~~g~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~ 369 (474)
T 1wyu_B 293 PVPLVERGEEGFY-LDF-D-RPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPY 369 (474)
T ss_dssp CSCEEEECSSCEE-EEC-C-CTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSS
T ss_pred CCCeeeccCCeeE-ecc-c-CcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecC
Confidence 1 0 000000 000 0 000000000011222222222223332223456677888999999999999988888733
Q ss_pred CCCcceEEEEEc
Q 018318 339 GGTENHLVLWDL 350 (358)
Q Consensus 339 ~~~~~~~~~v~~ 350 (358)
+....+.+++++
T Consensus 370 ~~~~~~~~~~~~ 381 (474)
T 1wyu_B 370 DGPSMHEFVAQP 381 (474)
T ss_dssp CSSCCSCEEEBC
T ss_pred CCCcceEEEEEc
Confidence 222233366666
No 107
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.87 E-value=1.3e-21 Score=183.27 Aligned_cols=287 Identities=13% Similarity=0.070 Sum_probs=177.8
Q ss_pred cceeEeccCCCCCHHHHHHHhcccccCCCCCCC--CCCCCCCchhHHHHHHHHHHHHHHhcCCCCC-CCCccccccCChH
Q 018318 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMP--GNRYYGGNEFIDEIENLCRSRALQTFHLDPT-QWGVNVQPYSGSP 108 (358)
Q Consensus 32 ~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~--~~~~~~~~~~~~~le~~~~~~la~~~g~~~~-~~~~~v~~~sGt~ 108 (358)
+.+.+.+++..+|+.|++++.+.+....+.+.. ...++ +... .++.+++++++++++|++.+ + +.+++++|++
T Consensus 4 ~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~la~~~g~~~~~~--~i~~t~g~t~ 79 (362)
T 2c0r_A 4 RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHR-GAVY-EAVHNEAQARLLALLGNPTGYK--VLFIQGGAST 79 (362)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT-SHHH-HHHHHHHHHHHHHHTTCCSSEE--EEEESSHHHH
T ss_pred ceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCC-cHHH-HHHHHHHHHHHHHHhCCCCCcE--EEEECCCchH
Confidence 457788899999999999998887542221111 00111 2233 33445778999999999752 2 2233356678
Q ss_pred HHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCC-CCCCHHHHHHHHhhcCCcEEEE
Q 018318 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSST-GYIDYDKLEEKALDFRPKLIIC 187 (358)
Q Consensus 109 a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~id~~~l~~~l~~~~~~~v~~ 187 (358)
|+..++.++++|||+|+++.+.+.++... ..++..| .+..++++.+.+. ..+|+++++ +. .++++|++
T Consensus 80 a~~~~~~~l~~~gd~vl~~~~~~~~~~~~-------~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~-~~t~~v~~ 148 (362)
T 2c0r_A 80 QFAMIPMNFLKEGQTANYVMTGSWASKAL-------KEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ-DNAAYLHL 148 (362)
T ss_dssp HHHHHHHHHCCTTCEEEEEECSHHHHHHH-------HHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC-TTEEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEEecCcHhHHHH-------HHHHHhC-CeEEEecccccccccCCCHHHcc--cC-CCcCEEEE
Confidence 99999999999999998876532221100 0123346 5555554311112 236776654 44 36888887
Q ss_pred cCCCCC--C-ccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCCe-eEEEEeCCCCC-
Q 018318 188 GGSAYP--R-DWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA-GMIFYRKGPKP- 262 (358)
Q Consensus 188 ~~~~~~--~-~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~- 262 (358)
++++|+ . ..|+++| +|+++++|++|+.|.. +.++...|++++|+||++ ||.| |+++++++..+
T Consensus 149 ~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~-----~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~~~~~ 216 (362)
T 2c0r_A 149 TSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSR-----PFDLNQFGLVYAGAQKNL-GPSGVTVVIVREDLVAE 216 (362)
T ss_dssp ESEETTTTEECSSCCCC------TTSCEEEECTTTTTSS-----CCCGGGCSEEEEETTTTT-CCSSCEEEEEEGGGSSS
T ss_pred eCCcCccceeccccccc------CCCEEEEEChhhccCC-----ccchhHCcEEEEeccccc-cCcCcEEEEEcHHHHhh
Confidence 766554 3 2567776 8999999999987642 123344599999999998 5777 99999886432
Q ss_pred CCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHhhCC-c-eeeeC
Q 018318 263 PKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP-AFKAYAKQVKANAVALGNYLTGKG-Y-SLVTG 339 (358)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~G-~-~~~~~ 339 (358)
+.+..+.+ .++...... ....++++...++++.++++.+... +++.+.++.+++++++++.|++.| + ++..+
T Consensus 217 l~~~~~~~--~~~~~~~~~---~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 291 (362)
T 2c0r_A 217 SPKHLPTM--LRYDTYVKN---NSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVD 291 (362)
T ss_dssp CCTTSCGG--GCHHHHHHT---TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSC
T ss_pred ccccCchH--HhHHHHhhc---cCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Confidence 21111100 011111011 1112456667777778888775433 568889999999999999999987 6 77432
Q ss_pred C--CcceEEEEEc
Q 018318 340 G--TENHLVLWDL 350 (358)
Q Consensus 340 ~--~~~~~~~v~~ 350 (358)
+ .....+++.+
T Consensus 292 ~~~~~~~~~~~~~ 304 (362)
T 2c0r_A 292 VDSRSDMNITFRL 304 (362)
T ss_dssp GGGBCSSEEEEEC
T ss_pred hHHcCCcEEEEEc
Confidence 1 1234566665
No 108
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.87 E-value=6.1e-21 Score=180.80 Aligned_cols=281 Identities=12% Similarity=0.038 Sum_probs=174.5
Q ss_pred cceeEeccCC--CCCHHHHHHHhcccccCC---CCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCC--CCCCCCcccccc
Q 018318 32 RGIELIASEN--FTSFAVIEALGSALTNKY---SEGMPGNRYYGGNEFIDEIENLCRSRALQTFHL--DPTQWGVNVQPY 104 (358)
Q Consensus 32 ~~~~l~a~~~--~~~~~V~~a~~~~~~~~~---~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~--~~~~~~~~v~~~ 104 (358)
+.+.|..+.. .+++.|.+++.+.+.... ..+|+.. ....++.+.+.+++.+.+|. +++ .|+++
T Consensus 36 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~----~i~~~ 105 (398)
T 3ele_A 36 NVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSA------QGDVETRAAIAEFLNNTHGTHFNAD----NLYMT 105 (398)
T ss_dssp GCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGG----GEEEE
T ss_pred CeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCC------CCcHHHHHHHHHHHHHHhCCCCChH----HEEEc
Confidence 4577776533 357899999987765421 1123211 12235555666788888784 333 24445
Q ss_pred C-ChHHHHHHHHhhcCCC-CeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCC
Q 018318 105 S-GSPANFAAYTAVLEPH-DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRP 182 (358)
Q Consensus 105 s-Gt~a~~~~l~a~~~~g-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~ 182 (358)
+ |++|+..++.+++++| |+|++..|.|.++.. .+...|.. +++++.+.+++.+|++++++++++ ++
T Consensus 106 ~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~---------~~~~~g~~--~~~v~~~~~~~~~d~~~l~~~l~~-~~ 173 (398)
T 3ele_A 106 MGAAASLSICFRALTSDAYDEFITIAPYFPEYKV---------FVNAAGAR--LVEVPADTEHFQIDFDALEERINA-HT 173 (398)
T ss_dssp SSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHH---------HHHHTTCE--EEEECCCTTTSSCCHHHHHHTCCT-TE
T ss_pred cCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHH---------HHHHcCCE--EEEEecCCcCCcCCHHHHHHHhCc-CC
Confidence 5 4779999999999999 999999998876431 23445654 444454544678999999999875 78
Q ss_pred cEEEEcCCCCC--Cccc---hHHHHHHHHH------hCCEEEEechhhhhhhhcc-ccCCCCC--cccEEEecCCccC--
Q 018318 183 KLIICGGSAYP--RDWD---YARFRAVADK------CGALLLCDMAHISGLVAAQ-EAANPFE--YCHIVTTTTHKSL-- 246 (358)
Q Consensus 183 ~~v~~~~~~~~--~~~~---l~~i~~la~~------~g~~lvvD~a~~~g~~~~~-~~~~~~~--~~d~~~~s~~K~l-- 246 (358)
++|++++++|| ...+ +++|.++|++ ||+++|+|++|+. +.+.+ ..+...+ +.++++.|+||++
T Consensus 174 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 252 (398)
T 3ele_A 174 RGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYRE-IVYDGIKVPFVTKYYDNTLVCYSYSKSLSL 252 (398)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTT-CBCTTCCCCCGGGTCSSEEEEEESTTTSSC
T ss_pred CEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccc-cccCCCCcCChHhhcCCeEEEEehhhcCCC
Confidence 88888877776 3445 7788899999 9999999999764 33222 1111112 4568999999987
Q ss_pred CCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 018318 247 RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALG 326 (358)
Q Consensus 247 ~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~ 326 (358)
+|.+.|+++++++.. ....+...+..........+++.....++.. .+... ...+++.++++++.
T Consensus 253 ~G~r~G~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~l~~~---~~~~~~~~~~~~l~ 317 (398)
T 3ele_A 253 PGERIGYVLVPDEVY---------DKAELYAAVCGAGRALGYVCAPSLFQKMIVK---CQGAT---GDINAYKENRDLLY 317 (398)
T ss_dssp TTTCCEEEECCTTST---------THHHHHHHHHHHHHHTTCCCSCHHHHHHHTT---CTTCC---CCHHHHHHHHHHHH
T ss_pred ccceeEEEEEcchhh---------hHHHHHHHHHHHhhhccccCCCHHHHHHHHH---HhcCH---HHHHHHHHHHHHHH
Confidence 456779999988521 0001222222111100011122222222111 11111 23566788899999
Q ss_pred HHHhhCCceeeeCCCcceEEEEEcC
Q 018318 327 NYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 327 ~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
+.|++.|+++.. +..+..+|+++.
T Consensus 318 ~~L~~~g~~~~~-~~~~~~~~~~~~ 341 (398)
T 3ele_A 318 EGLTRIGYHCFK-PDGAFYMFVKAL 341 (398)
T ss_dssp HHHHHHTCCEEC-CSBSSEEEEECS
T ss_pred HHHHHcCCeecC-CCeeEEEEEEcC
Confidence 999988998875 456666888864
No 109
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.87 E-value=1.4e-20 Score=178.07 Aligned_cols=298 Identities=12% Similarity=0.074 Sum_probs=189.2
Q ss_pred cccccchHHHHHHHHHHHHh-----hcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHH
Q 018318 11 SLETVDPEIHDLIEKEKRRQ-----CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCR 83 (358)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~-----~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~ 83 (358)
++..+.++.+..+.+...+. ++.+.|..+.+. +|+.|.+++.+.+.... +|+.. ....++++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~y~~~------~g~~~lr~~la 76 (396)
T 3jtx_A 5 LLKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLHELE--KYPLT------AGLPELRQACA 76 (396)
T ss_dssp HHHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSCCSCCCHHHHHHHHHTGGGGG--SCCCT------TCCHHHHHHHH
T ss_pred hhccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCCCCCCCHHHHHHHHHHhhhcc--CCCCC------CCcHHHHHHHH
Confidence 44455566555555443322 346777766543 47999999988764222 33321 11235555666
Q ss_pred HHHHHhcCCC---CCCCCccccccC-ChHHHHHHHHhhcCCC-----CeEEEecCCCCccccccccccCCccccccccee
Q 018318 84 SRALQTFHLD---PTQWGVNVQPYS-GSPANFAAYTAVLEPH-----DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYF 154 (358)
Q Consensus 84 ~~la~~~g~~---~~~~~~~v~~~s-Gt~a~~~~l~a~~~~g-----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 154 (358)
+++++.+|.+ +++ .|++++ |++|+..++.+++++| |+|++..|.|.++.. .+...|..+
T Consensus 77 ~~l~~~~g~~~~~~~~---~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~---------~~~~~g~~~ 144 (396)
T 3jtx_A 77 NWLKRRYDGLTVDADN---EILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEG---------ATLLGGGEI 144 (396)
T ss_dssp HHHHHHTTTCCCCTTT---SEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHH---------HHHHTTCEE
T ss_pred HHHHHhcCCCCCCCCC---eEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHH---------HHHHcCCEE
Confidence 8888888864 320 244454 5679999999999997 799999988865431 233456544
Q ss_pred EEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccC
Q 018318 155 ESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAA 229 (358)
Q Consensus 155 ~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~ 229 (358)
. .++.+.+++.+|++++++++.+ ++++|++++++|| ...+ +++|.++|++||+++|+|++|+. +...+..+
T Consensus 145 ~--~v~~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~~~ 220 (396)
T 3jtx_A 145 H--FANCPAPSFNPDWRSISEEVWK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSE-IYFDGNKP 220 (396)
T ss_dssp E--EEECCTTTCCCCGGGSCHHHHH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTT-CCSTTCCC
T ss_pred E--EeecCCCCCccCHHHHHHhhcc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCC
Confidence 4 4444434557899999999976 7899888777776 3444 55699999999999999999763 33222111
Q ss_pred CCC----------CcccEEEecCCccC--CCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHH
Q 018318 230 NPF----------EYCHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIG 297 (358)
Q Consensus 230 ~~~----------~~~d~~~~s~~K~l--~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (358)
... .+.++++.|++|.+ +|.+.|+++.++ ++.+.+....... ..+++....+
T Consensus 221 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~---------------~~~~~~~~~~~~~-~~~~~~~~~~ 284 (396)
T 3jtx_A 221 LGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDA---------------ELLKNFLLYRTYH-GSAMSIPVQR 284 (396)
T ss_dssp CCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECH---------------HHHHHHHHHHHHH-TCCCCHHHHH
T ss_pred chHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCH---------------HHHHHHHHHHhhc-ccCCCHHHHH
Confidence 110 14568899999975 456679998876 4555444321111 1233444444
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcCC
Q 018318 298 ALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 298 al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~~ 352 (358)
++..++.. ...+....+++.++++++.+.|.+. +.+.. +..++.+|+++..
T Consensus 285 a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~~~~~ 335 (396)
T 3jtx_A 285 ASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQV-FDVKL-PDASFYIWLKVPD 335 (396)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT-SCCCC-CSSSSEEEEECTT
T ss_pred HHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc-CCccC-CCeeEEEEEECCC
Confidence 44455542 3445777888999999999999876 44443 4567788998753
No 110
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.86 E-value=1.4e-20 Score=175.15 Aligned_cols=273 Identities=14% Similarity=0.109 Sum_probs=172.1
Q ss_pred ceeEeccC-CCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHH
Q 018318 33 GIELIASE-NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (358)
Q Consensus 33 ~~~l~a~~-~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~ 111 (358)
.+.+..+. ..++|.|++++.+.+.. +..+ +...+... .+++++++++| ... ..+++++|++|+.
T Consensus 9 ~id~~~~~~~~~~~~v~~a~~~~~~~-~~~~------~~~~~~~~----~l~~~la~~~g-~~~---~v~~~~~gt~a~~ 73 (356)
T 1v72_A 9 ALGFSSDNIAGASPEVAQALVKHSSG-QAGP------YGTDELTA----QVKRKFCEIFE-RDV---EVFLVPTGTAANA 73 (356)
T ss_dssp CCBCSCGGGCCCCHHHHHHHHHTTSS-CCCS------TTCSHHHH----HHHHHHHHHHT-SCC---EEEEESCHHHHHH
T ss_pred eEeeccCCccCCCHHHHHHHHhhccC-cccc------cccchHHH----HHHHHHHHHhC-CCC---cEEEeCCccHHHH
Confidence 34444433 34689999999876521 1111 22223333 44589999999 332 1356677889999
Q ss_pred HHHHhhcCCCCeEEEecCCCCccccccccccCCcccccc--cceeEEeecccCCCCCCCCHHHHHH-HHhhc------CC
Q 018318 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT--SIYFESLPYKVNSSTGYIDYDKLEE-KALDF------RP 182 (358)
Q Consensus 112 ~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~id~~~l~~-~l~~~------~~ 182 (358)
.++.++++|||+|++..+.|.+.+... .+... |.. +++++.+ ++.+|++++++ ++++. ++
T Consensus 74 ~al~~~~~~gd~vi~~~~~~~~~~~~~-------~~~~~~~g~~--~~~v~~~--~~~~d~~~l~~~~i~~~~~~~~~~~ 142 (356)
T 1v72_A 74 LCLSAMTPPWGNIYCHPASHINNDECG-------APEFFSNGAK--LMTVDGP--AAKLDIVRLRERTREKVGDVHTTQP 142 (356)
T ss_dssp HHHHTSCCTTEEEEECTTSHHHHSSTT-------HHHHHTTSCE--EEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred HHHHHhcCCCCEEEEcCccchhhhhch-------HHHHHhCCcE--EEEecCC--CCeEcHHHHHHHhhhcchhhccCCc
Confidence 999999999999999887765433110 02333 554 4444443 46899999999 88642 47
Q ss_pred cEEEEcCCC-CCC---ccchHHHHHHHHHhCCEEEEechhhhhhh-hccccCCCC--C-cccEEEecCCccCCCCCe-eE
Q 018318 183 KLIICGGSA-YPR---DWDYARFRAVADKCGALLLCDMAHISGLV-AAQEAANPF--E-YCHIVTTTTHKSLRGPRA-GM 253 (358)
Q Consensus 183 ~~v~~~~~~-~~~---~~~l~~i~~la~~~g~~lvvD~a~~~g~~-~~~~~~~~~--~-~~d~~~~s~~K~l~g~~g-G~ 253 (358)
++|++++++ +|. ..++++|.++|++||+++|+|++|+.+.. ..+..+..+ . ++|++++|+||+ ++|.| |+
T Consensus 143 ~~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~ 221 (356)
T 1v72_A 143 ACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAI 221 (356)
T ss_dssp EEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEE
T ss_pred eEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEE
Confidence 888877654 455 45789999999999999999999865422 112112222 2 678999999999 56777 68
Q ss_pred EEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-
Q 018318 254 IFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK- 332 (358)
Q Consensus 254 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 332 (358)
++++++ +.+.+...... .+........+...++..+....+....++..++++++++.|++.
T Consensus 222 ~~~~~~---------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~ 284 (356)
T 1v72_A 222 VLFNTS---------------LATEMSYRRKR--AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLG 284 (356)
T ss_dssp EESSGG---------------GHHHHHHHHHH--TTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred EEECHH---------------HHhhHHHHhhc--cCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 877653 43333321110 011111111222233444433335567788889999999999985
Q ss_pred CceeeeCCCcceEEEEEc
Q 018318 333 GYSLVTGGTENHLVLWDL 350 (358)
Q Consensus 333 G~~~~~~~~~~~~~~v~~ 350 (358)
|+++.. +..++.+|+++
T Consensus 285 g~~~~~-~~~~~~~~~~~ 301 (356)
T 1v72_A 285 GVEVLG-GTEANILFCRL 301 (356)
T ss_dssp TEEEES-CCCSSEEEEEE
T ss_pred CcEEcc-CCCccEEEEEc
Confidence 898764 45677788875
No 111
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.86 E-value=1.2e-20 Score=179.04 Aligned_cols=264 Identities=17% Similarity=0.121 Sum_probs=173.9
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCC-CCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh--cC
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNR-YYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV--LE 119 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~-~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~--~~ 119 (358)
.+|.|.+++.+.+.... .+..+.+ .+...+...++ ++++++++|.+. .+++++|+.++..++..+ ++
T Consensus 61 ~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~l----~~~la~~~~~~~-----~i~~~sG~~a~~~~~~~l~~~~ 130 (401)
T 2bwn_A 61 QHPVVLAAMHEALEAVG-AGSGGTRNISGTTAYHRRL----EAEIAGLHQKEA-----ALVFSSAYNANDATLSTLRVLF 130 (401)
T ss_dssp GCHHHHHHHHHHHHHHC-SCCCSBTTTBCCBHHHHHH----HHHHHHHTTCSE-----EEEESCHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHcC-CCCCCcCcccCChHHHHHH----HHHHHHHhCCCc-----EEEECCcHHHHHHHHHHHhcCC
Confidence 36899999988775421 1111111 11222334444 488999999753 366789988888777765 36
Q ss_pred CCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhh---cCCcEEEEcCCCCC--C
Q 018318 120 PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD---FRPKLIICGGSAYP--R 194 (358)
Q Consensus 120 ~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~---~~~~~v~~~~~~~~--~ 194 (358)
|||+|++..+.|++... .++..|.. ++.++. + |++++++++++ .++++|++++++++ .
T Consensus 131 ~gd~Vl~~~~~~~~~~~---------~~~~~g~~--~~~v~~---~---d~~~le~~l~~~~~~~~~~v~~~~~~nptG~ 193 (401)
T 2bwn_A 131 PGLIIYSDSLNHASMIE---------GIKRNAGP--KRIFRH---N---DVAHLRELIAADDPAAPKLIAFESVYSMDGD 193 (401)
T ss_dssp TTCEEEEETTCCHHHHH---------HHHHSCCC--EEEECT---T---CHHHHHHHHHHSCTTSCEEEEEESBCTTTCC
T ss_pred CCCEEEECchhhHHHHH---------HHHHcCCe--EEEEcC---C---CHHHHHHHHHhhccCCceEEEEecCcCCCCC
Confidence 99999999988876541 22345544 344433 1 78999998874 36788888877654 6
Q ss_pred ccchHHHHHHHHHhCCEEEEechhhhhhhhccccC----CCC-CcccEEEecCCccCCCCCeeEEEEeCCCCCCCCCCCC
Q 018318 195 DWDYARFRAVADKCGALLLCDMAHISGLVAAQEAA----NPF-EYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPE 269 (358)
Q Consensus 195 ~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~----~~~-~~~d~~~~s~~K~l~g~~gG~i~~~~~~~~~~~~~~~ 269 (358)
..|+++|.++|++||+++|+|++|+.|........ ..+ ...|+++.|++|+++ ..||++++++
T Consensus 194 ~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~-~~GG~~~~~~----------- 261 (401)
T 2bwn_A 194 FGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG-VFGGYIAASA----------- 261 (401)
T ss_dssp BCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC-SCCEEEEECH-----------
T ss_pred cCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhcc-CCCCEEecCH-----------
Confidence 78999999999999999999999986654211100 011 145899999999985 4568888865
Q ss_pred CccccHHHHhhhhcCC-CCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEE
Q 018318 270 GAVYDFEDKINFAVFP-SLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLW 348 (358)
Q Consensus 270 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v 348 (358)
++.+.+.....+ ...++.+...++++.++++.+...+++...+++.++++++.+.|++.|+++.. + .++.+|+
T Consensus 262 ----~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~-~~~~~~~ 335 (401)
T 2bwn_A 262 ----RMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIID-H-GSHIVPV 335 (401)
T ss_dssp ----HHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-C-SSSCEEE
T ss_pred ----HHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccC-C-CCCeEEE
Confidence 344444321100 01122233555666677777654445788889999999999999988988764 2 3457888
Q ss_pred EcC
Q 018318 349 DLR 351 (358)
Q Consensus 349 ~~~ 351 (358)
.+.
T Consensus 336 ~~~ 338 (401)
T 2bwn_A 336 VIG 338 (401)
T ss_dssp ECC
T ss_pred EeC
Confidence 763
No 112
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.86 E-value=2.5e-20 Score=177.10 Aligned_cols=304 Identities=17% Similarity=0.075 Sum_probs=186.6
Q ss_pred hhhcccccccchHHHHHHHHHHHH--hh--cceeEeccCC----CCCHHHHHHHhcccccCC--CCCCCCCCCCCCchhH
Q 018318 6 EWGNSSLETVDPEIHDLIEKEKRR--QC--RGIELIASEN----FTSFAVIEALGSALTNKY--SEGMPGNRYYGGNEFI 75 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~l~a~~~----~~~~~V~~a~~~~~~~~~--~~g~~~~~~~~~~~~~ 75 (358)
.+.+.+++.++++.+..+.+...+ .. +.+.+..+.. ..++.+.+++.+.+.... .. |+. ....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~------~~~~ 77 (407)
T 2zc0_A 5 KYLAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTP------ANGI 77 (407)
T ss_dssp GGSCGGGGGCCCCHHHHHHHHHHHHHHSSCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCC------TTCC
T ss_pred hhhhhhhccCCchHHHHHHHhhhcccCCCCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCC------CCCC
Confidence 345677777777765555443331 23 5566654432 246788888877764321 01 211 1223
Q ss_pred HHHHHHHHHHHHHhcCC--CCCCCCccccccC-ChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccc
Q 018318 76 DEIENLCRSRALQTFHL--DPTQWGVNVQPYS-GSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI 152 (358)
Q Consensus 76 ~~le~~~~~~la~~~g~--~~~~~~~~v~~~s-Gt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~ 152 (358)
.++++.+.+++.+.+|. +.+ .+++++ |++|+..++.+++++||+|++..+.|.++.. .+...|.
T Consensus 78 ~~l~~~la~~~~~~~g~~~~~~----~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g~ 144 (407)
T 2zc0_A 78 PELREELAAFLKKYDHLEVSPE----NIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLL---------AFEQLGA 144 (407)
T ss_dssp HHHHHHHHHHHHHHSCCCCCGG----GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH---------HHHTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCcc----eEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHH---------HHHHcCC
Confidence 46665555666665684 332 244455 4789999999999999999999988765431 2344565
Q ss_pred eeEEeecccCCCCCCCCHHHHHHHHh----h-cCCcEEE-EcCCCCC--CccchH---HHHHHHHHhCCEEEEechhhhh
Q 018318 153 YFESLPYKVNSSTGYIDYDKLEEKAL----D-FRPKLII-CGGSAYP--RDWDYA---RFRAVADKCGALLLCDMAHISG 221 (358)
Q Consensus 153 ~~~~~~~~~~~~~~~id~~~l~~~l~----~-~~~~~v~-~~~~~~~--~~~~l~---~i~~la~~~g~~lvvD~a~~~g 221 (358)
.+. .++.+. + .+|+++++++++ + .++++|+ +++++|+ ...|++ +|.++|++||+++|+|++|+.+
T Consensus 145 ~~~--~v~~~~-~-~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 220 (407)
T 2zc0_A 145 KIE--GVPVDN-D-GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFM 220 (407)
T ss_dssp EEE--EEEEET-T-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTS
T ss_pred EEE--EcccCC-C-CCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 444 444442 3 399999999997 4 2678774 5665554 556665 9999999999999999998654
Q ss_pred hhhccccCCCC---C--cccEEEecCCccCC-CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhH
Q 018318 222 LVAAQEAANPF---E--YCHIVTTTTHKSLR-GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQ 295 (358)
Q Consensus 222 ~~~~~~~~~~~---~--~~d~~~~s~~K~l~-g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (358)
...+....++ + +.++++.|++|+++ |.++|++++++ ++.+.+.........+ ++...
T Consensus 221 -~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~---------------~~~~~~~~~~~~~~~~-~~~~~ 283 (407)
T 2zc0_A 221 -RYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEG---------------EILKKVLMQKQPIDFC-APAIS 283 (407)
T ss_dssp -BSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECCH---------------HHHHHHHHHHTTTTSS-SCHHH
T ss_pred -ccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecCH---------------HHHHHHHHHHHhhcCC-CCHHH
Confidence 2222111112 1 34578899999986 34679999876 4555555432222222 23333
Q ss_pred HHHHHHHHHHhc-c-HHHHHHHHHHHHHHHHHHHHHhhC--CceeeeCCCcceEEEEEcC
Q 018318 296 IGALAVALKQAS-T-PAFKAYAKQVKANAVALGNYLTGK--GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 296 ~~al~~al~~~~-~-~~~~~~~~~~~~~~~~l~~~L~~~--G~~~~~~~~~~~~~~v~~~ 351 (358)
..++..+++... . ..++...+++.++++++.+.|++. |+++.. +..++.+|+++.
T Consensus 284 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~ 342 (407)
T 2zc0_A 284 QYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTK-PIAGMFVMFFLP 342 (407)
T ss_dssp HHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCC-CSBSSEEEEECS
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEec-CCCcEEEEEEcC
Confidence 333334443220 1 123456777888899999999874 677654 345677898874
No 113
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.86 E-value=5.4e-21 Score=186.34 Aligned_cols=273 Identities=12% Similarity=0.072 Sum_probs=172.9
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCC------CCccccccCChHHHHHHHHhh
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQ------WGVNVQPYSGSPANFAAYTAV 117 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~------~~~~v~~~sGt~a~~~~l~a~ 117 (358)
+..+.+++...+. .... .+...+...++|+.+++++++++|++.+. .+..+++++||+|+..++.++
T Consensus 87 ~~~~~~~~~~~~n-~~~~------~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~ 159 (486)
T 1js3_A 87 PAMLADMLCGAIG-CIGF------SWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAA 159 (486)
T ss_dssp HHHHHHHHHHHHC-CCCS------SGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcc------ccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHH
Confidence 3456666665542 2111 12234567789999999999999998520 001356677888999888765
Q ss_pred cCC---------CC--------e--EEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHh
Q 018318 118 LEP---------HD--------R--IMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKAL 178 (358)
Q Consensus 118 ~~~---------gd--------~--Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~ 178 (358)
..+ || + |+++.+.|.++. +.+...|+++ +.++++ +++.+|+++|+++++
T Consensus 160 ~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~---------~~~~~~G~~v--~~v~~d-~~~~~d~~~L~~~i~ 227 (486)
T 1js3_A 160 RTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE---------RAGLIGGVKL--KAIPSD-GKFAMRASALQEALE 227 (486)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHH---------HHHHHHTCEE--EEECCC-TTSCCCHHHHHHHHH
T ss_pred HHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHH---------HHHHhCCCce--EEeecC-CCCCCCHHHHHHHHH
Confidence 321 43 4 667777765432 2334567654 444544 478999999999997
Q ss_pred hcC-----CcEEEEcCC--CCCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCC---CCcccEEEecCCccCCC
Q 018318 179 DFR-----PKLIICGGS--AYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANP---FEYCHIVTTTTHKSLRG 248 (358)
Q Consensus 179 ~~~-----~~~v~~~~~--~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~---~~~~d~~~~s~~K~l~g 248 (358)
+.. |.+|+++.+ .+|...|+++|+++|++||+++++|+||+.+....+.+... +.++|++++++||++++
T Consensus 228 ~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~ 307 (486)
T 1js3_A 228 RDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLV 307 (486)
T ss_dssp HHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSC
T ss_pred HHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCC
Confidence 532 236665544 35678899999999999999999999987665432222111 13789999999999877
Q ss_pred CCe-eEEEEeCCCCCCCCCCCCCccccHHHHhhhh---c--------------CCCCcCCCChhHHHHHHHHHHHhccHH
Q 018318 249 PRA-GMIFYRKGPKPPKKGQPEGAVYDFEDKINFA---V--------------FPSLQGGPHNHQIGALAVALKQASTPA 310 (358)
Q Consensus 249 ~~g-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------~~~~~~~~~~~~~~al~~al~~~~~~~ 310 (358)
|.+ |+++++++. .+.+.+... . ......+.. ....+++++++.+..++
T Consensus 308 p~~~G~l~~~~~~-------------~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr-~~~~~~~~al~~~g~~g 373 (486)
T 1js3_A 308 NFDCSAMWVKRRT-------------DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRR-FRSLKMWFVFRMYGVKG 373 (486)
T ss_dssp CSSCEEEEESCHH-------------HHHGGGC------------CCSCCCGGGSSSCSCCC-CTHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEeCHH-------------HHHHHhcCCchhhCCCcccccCCCCccccCCCCCCc-hhHHHHHHHHHHHhHHH
Confidence 654 899887641 011111000 0 000011111 12345566776655556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC-CceeeeCCCcceEEEEEc
Q 018318 311 FKAYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWDL 350 (358)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~v~~ 350 (358)
+++++++..++++++.+.|++. |+++..++ ...++.+.+
T Consensus 374 ~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~ 413 (486)
T 1js3_A 374 LQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRL 413 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-CSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-ceeEEEEEe
Confidence 7888999999999999999987 89987532 333444443
No 114
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.86 E-value=3.6e-20 Score=171.36 Aligned_cols=263 Identities=16% Similarity=0.177 Sum_probs=173.4
Q ss_pred hhcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCC-
Q 018318 30 QCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSG- 106 (358)
Q Consensus 30 ~~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sG- 106 (358)
.++.+.|..++++ ++|.|.+++.+.+... ..|+ .+...++ ++++++++|++++ .|++++|
T Consensus 15 ~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~--~~y~-------~~~~~~l----r~~la~~~~~~~~----~i~~t~G~ 77 (337)
T 3p1t_A 15 AAQAVCLAFNENPEAVEPRVQAAIAAAAARI--NRYP-------FDAEPRV----MRKLAEHFSCPED----NLMLVRGI 77 (337)
T ss_dssp CCCCEECSSCCCCSCCCHHHHHHHHHHGGGT--TSCC-------TTHHHHH----HHHHHHHHTSCGG----GEEEESHH
T ss_pred CCCceEeeCCCCCCCCCHHHHHHHHHhhhhh--ccCC-------CCchHHH----HHHHHHHhCcCHH----HEEEeCCH
Confidence 3456778777664 4899999998766432 1232 1333445 4789999998764 3555665
Q ss_pred hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEE
Q 018318 107 SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLII 186 (358)
Q Consensus 107 t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~ 186 (358)
++++..++.++ +||+|++..|.|.++.. .++..|.. +++++.+ +++.+|+++++++ .++++|+
T Consensus 78 ~~~l~~~~~~~--~gd~vl~~~p~~~~~~~---------~~~~~g~~--~~~v~~~-~~~~~d~~~l~~~---~~~~~v~ 140 (337)
T 3p1t_A 78 DECFDRISAEF--SSMRFVTAWPGFDGYRA---------RIAVSGLR--HFEIGLT-DDLLLDPNDLAQV---SRDDCVV 140 (337)
T ss_dssp HHHHHHHHHHS--TTSEEEEESSSCSHHHH---------HHTTSCCE--EEEECBC-TTSSBCHHHHTTC---CTTEEEE
T ss_pred HHHHHHHHHhc--CCCeEEEeCCCcHHHHH---------HHHHcCCE--EEEecCC-CCCCCCHHHHHhh---cCCCEEE
Confidence 46888887776 99999999998876431 23445654 4455544 3578999999875 2578888
Q ss_pred EcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccC--CCCCeeEEEEeCCCCC
Q 018318 187 CGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSL--RGPRAGMIFYRKGPKP 262 (358)
Q Consensus 187 ~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l--~g~~gG~i~~~~~~~~ 262 (358)
+++++|| ...|++++.++|+++++ +++|++|+ ++...+.......+.+++++|+||++ +|.+.|++++++
T Consensus 141 i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~-~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~---- 214 (337)
T 3p1t_A 141 LANPSNPTGQALSAGELDQLRQRAGK-LLIDETYV-DYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPS---- 214 (337)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTG-GGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCH----
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCCh-hhccccccccccCCCEEEEeeCchhccCcchheEEEEeCH----
Confidence 8877765 67899999999999996 66699975 33322211111125679999999987 466779999877
Q ss_pred CCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCc
Q 018318 263 PKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTE 342 (358)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~ 342 (358)
++.+.+.....+ .+++....+++..+++. ...+...++++.++++++.+.|++.|+++.. +..
T Consensus 215 -----------~~~~~l~~~~~~---~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~ 277 (337)
T 3p1t_A 215 -----------ELIAAMKRKQWF---CNVGTLDLHALEAALDN--DRAREAHIAKTLAQRRRVADALRGLGYRVAS-SEA 277 (337)
T ss_dssp -----------HHHHHHHTTSCT---TCSCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC-CSS
T ss_pred -----------HHHHHHHhhcCC---CCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCcCEECC-CCC
Confidence 455555443222 22343444443333332 1235677788888999999999999988764 333
Q ss_pred ceEEEEEc
Q 018318 343 NHLVLWDL 350 (358)
Q Consensus 343 ~~~~~v~~ 350 (358)
+ .+|+..
T Consensus 278 ~-~~~~~~ 284 (337)
T 3p1t_A 278 N-FVLVEN 284 (337)
T ss_dssp S-EEEEEC
T ss_pred e-EEEEEc
Confidence 3 455543
No 115
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.86 E-value=2.4e-20 Score=175.75 Aligned_cols=262 Identities=16% Similarity=0.092 Sum_probs=160.9
Q ss_pred ceeEec--cCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHH
Q 018318 33 GIELIA--SENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPAN 110 (358)
Q Consensus 33 ~~~l~a--~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~ 110 (358)
.+.+.. ++..++++|++++. .++ +. ..+++.+++.+++++|++.++ ..+++++|++|+
T Consensus 30 v~~~~~~~~~~~~~~~v~~a~~-----~~~----------~~---~~~~~~~~~~~a~~~g~~~~~--~~~~~~ggt~a~ 89 (374)
T 2aeu_A 30 LYDLSGLSGGFLIDEKDKALLN-----TYI----------GS---SYFAEKVNEYGLKHLGGDEND--KCVGFNRTSSAI 89 (374)
T ss_dssp CEECSSCCCCCCCCHHHHHHHT-----STT----------HH---HHHHHHHHHHHHHHHTCCTTE--EEEEESSHHHHH
T ss_pred eeeecccCCCCCCCHHHHHHHH-----Hhc----------Cc---hHHHHHHHHHHHHHhCCCCcc--eEEEEcChHHHH
Confidence 444443 35677999999986 121 11 233445567778899984211 136677888999
Q ss_pred HHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcE-EEEcC
Q 018318 111 FAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKL-IICGG 189 (358)
Q Consensus 111 ~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~-v~~~~ 189 (358)
..++.++ |||+|+++.+.|+++++.. ..+...|.. ++.+ .|+++++++ . .++++ |++++
T Consensus 90 ~~~~~~~--~gd~Vl~~~~~y~~~~~~~------~~~~~~g~~--~~~v--------~d~~~l~~~-~-~~~~~~v~~~~ 149 (374)
T 2aeu_A 90 LATILAL--KPKKVIHYLPELPGHPSIE------RSCKIVNAK--YFES--------DKVGEILNK-I-DKDTLVIITGS 149 (374)
T ss_dssp HHHHHHH--CCSEEEEECSSSSCCTHHH------HHHHHTTCE--EEEE--------SCHHHHHTT-C-CTTEEEEEECB
T ss_pred HHHHHhC--CCCEEEEecCCCCccHHHH------HHHHHcCcE--EEEe--------CCHHHHHhc-C-CCccEEEEEcc
Confidence 9999887 9999999999887765311 012334543 3333 378999887 4 47899 88887
Q ss_pred CCCC---CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC-cccEEEecCCccCCCCCeeEEEEeCCCCCCCC
Q 018318 190 SAYP---RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKK 265 (358)
Q Consensus 190 ~~~~---~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~~~s~~K~l~g~~gG~i~~~~~~~~~~~ 265 (358)
++|+ ...++++|.++|++||+++|+|++|+.+.........++. ++|++++|+||+++|+++|++++++
T Consensus 150 p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~~G~~~~~~------- 222 (374)
T 2aeu_A 150 TMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKK------- 222 (374)
T ss_dssp CTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEH-------
T ss_pred CCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcceEEEEECH-------
Confidence 7765 3678999999999999999999998765321110001223 6799999999999899999999887
Q ss_pred CCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHH----HHHHHHHHhh----CCceee
Q 018318 266 GQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKAN----AVALGNYLTG----KGYSLV 337 (358)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~----~~~l~~~L~~----~G~~~~ 337 (358)
++.+.+....... .++++....+++..++.......+....++.+.. .+.+.+.|.. .|+.+.
T Consensus 223 --------~~~~~l~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~ 293 (374)
T 2aeu_A 223 --------ELVDKIYIEGTKF-GLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYE 293 (374)
T ss_dssp --------HHHHHHHHHHHTT-TCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEE
T ss_pred --------HHHHHHHHhhccc-cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCccee
Confidence 4555554432211 1223444444555566553211122222222222 3444555554 366665
Q ss_pred eCCCcceEEEEEc
Q 018318 338 TGGTENHLVLWDL 350 (358)
Q Consensus 338 ~~~~~~~~~~v~~ 350 (358)
..+....+.|++.
T Consensus 294 ~~~~g~~~~~~~~ 306 (374)
T 2aeu_A 294 RTPTGFVIKRVYK 306 (374)
T ss_dssp ECSSEEEEEEEES
T ss_pred eCCceEEEEeecc
Confidence 4344555555543
No 116
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.86 E-value=3.7e-21 Score=178.90 Aligned_cols=270 Identities=20% Similarity=0.181 Sum_probs=163.8
Q ss_pred eeEeccCC-CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHH
Q 018318 34 IELIASEN-FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFA 112 (358)
Q Consensus 34 ~~l~a~~~-~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~ 112 (358)
+.+..+.+ ++++.+++++.+...... . +...+...+++ +++++++|.+. .+++++|++|+..
T Consensus 6 i~~~~~~~~~p~~~~~~a~~~~~~~~~-------~-y~~~~~~~~l~----~~la~~~g~~~-----~~~~~~gt~a~~~ 68 (347)
T 1jg8_A 6 IDLRSDTVTKPTEEMRKAMAQAEVGDD-------V-YGEDPTINELE----RLAAETFGKEA-----ALFVPSGTMGNQV 68 (347)
T ss_dssp EECSCGGGCCCCHHHHHHHHTCCCCCG-------G-GTCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHH
T ss_pred EEeccccCCCCCHHHHHHHhcCCCCCc-------c-cCCChHHHHHH----HHHHHHhCCce-----EEEecCcHHHHHH
Confidence 45555543 457899999865432110 1 22234444555 78999999864 3667889999999
Q ss_pred HHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhc-----CCcEEEE
Q 018318 113 AYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF-----RPKLIIC 187 (358)
Q Consensus 113 ~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~-----~~~~v~~ 187 (358)
++.++++|||+|+++.++|.+.+... ..+...|.. ++++ .+ +++.+|++++++++++. ++++|++
T Consensus 69 ~~~~~~~~gd~Vl~~~~~~~~~~~~~------~~~~~~g~~--~~~v-~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~~ 138 (347)
T 1jg8_A 69 SIMAHTQRGDEVILEADSHIFWYEVG------AMAVLSGVM--PHPV-PG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAI 138 (347)
T ss_dssp HHHHHCCTTCEEEEETTCHHHHSSTT------HHHHHTCCE--EEEE-CE-ETTEECHHHHHHHSCCSCTTSCCEEEEEE
T ss_pred HHHHhcCCCCEEEEcCcchhhhcccc------chhhccCeE--EEEe-cC-CCCccCHHHHHHHhccccccccCceEEEE
Confidence 99999999999999998765432110 012334554 3333 22 35678999999998642 5788888
Q ss_pred cCCCC---CCcc---chHHHHHHHHHhCCEEEEechhhhhhhh-ccccCCCCC-cccEEEecCCccCCCCCeeEEEEeCC
Q 018318 188 GGSAY---PRDW---DYARFRAVADKCGALLLCDMAHISGLVA-AQEAANPFE-YCHIVTTTTHKSLRGPRAGMIFYRKG 259 (358)
Q Consensus 188 ~~~~~---~~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~-~~~~~~~~~-~~d~~~~s~~K~l~g~~gG~i~~~~~ 259 (358)
++++| |... ++++|.++|++||+++++|++|..+... .+.....+. ++|.+++|+||+++++.|++++.++
T Consensus 139 ~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~- 217 (347)
T 1jg8_A 139 ENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDR- 217 (347)
T ss_dssp ESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECH-
T ss_pred eccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCH-
Confidence 77764 4333 4678999999999999999998654221 111001111 6788889999999877766666655
Q ss_pred CCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHH-H-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceee
Q 018318 260 PKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQI-G-ALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLV 337 (358)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~ 337 (358)
++.+.+....... .++.....+ + +...+++... ...++..++++++++.|++.|+++.
T Consensus 218 --------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~~ 277 (347)
T 1jg8_A 218 --------------DFIERARKARKML-GGGMRQAGVLAAAGIIALTKMV-----DRLKEDHENARFLALKLKEIGYSVN 277 (347)
T ss_dssp --------------HHHHHHHHHHHHH-TCCCSSTHHHHHHHHHHHHHSS-----TTHHHHHHHHHHHHHHHHHHTCBCC
T ss_pred --------------HHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCceec
Confidence 3444332211110 111111111 1 1123343322 1233345677888899988788753
Q ss_pred eCCCcceEEEEEcC
Q 018318 338 TGGTENHLVLWDLR 351 (358)
Q Consensus 338 ~~~~~~~~~~v~~~ 351 (358)
..+..++.+|+++.
T Consensus 278 ~~~~~~~~~~~~~~ 291 (347)
T 1jg8_A 278 PEDVKTNMVILRTD 291 (347)
T ss_dssp GGGCCSSEEEEECT
T ss_pred cCCCcceEEEEEcc
Confidence 22345567888874
No 117
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.86 E-value=2.6e-21 Score=183.74 Aligned_cols=253 Identities=17% Similarity=0.134 Sum_probs=168.5
Q ss_pred cceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHH
Q 018318 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (358)
Q Consensus 32 ~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~ 111 (358)
..+.+.++.+..++.|++++.+.+... .| .. .+...+++ +.+++++|.+. .+++++|++|+.
T Consensus 31 ~~id~~~~~~~~~~~v~~a~~~~~~~~---~y-----~~-~~~~~~l~----~~la~~~~~~~-----~v~~~~Gt~a~~ 92 (399)
T 2oga_A 31 PFLDLKAAYEELRAETDAAIARVLDSG---RY-----LL-GPELEGFE----AEFAAYCETDH-----AVGVNSGMDALQ 92 (399)
T ss_dssp CSCCHHHHHHHTHHHHHHHHHHHHHHT---CC-----SS-SHHHHHHH----HHHHHHTTSSE-----EEEESCHHHHHH
T ss_pred cccccCcCCCCCCHHHHHHHHHHHhcC---CC-----CC-chhHHHHH----HHHHHHHCCCe-----EEEecCHHHHHH
Confidence 345565665556699999998876431 11 11 23344554 78999999874 366788999999
Q ss_pred HHHHhh-cCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCC
Q 018318 112 AAYTAV-LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGS 190 (358)
Q Consensus 112 ~~l~a~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~ 190 (358)
.++.++ +++||+|+++.+.|.+... .+...|.. ++.++.+++++.+|++++++++++ ++++|++++
T Consensus 93 ~~l~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g~~--~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~n- 159 (399)
T 2oga_A 93 LALRGLGIGPGDEVIVPSHTYIASWL---------AVSATGAT--PVPVEPHEDHPTLDPLLVEKAITP-RTRALLPVH- 159 (399)
T ss_dssp HHHHHTTCCTTCEEEEESSSCTHHHH---------HHHHTTCE--EEEECBCSSSSSBCHHHHHHHCCT-TEEEECCBC-
T ss_pred HHHHHhCCCCcCEEEECCCccHHHHH---------HHHHCCCE--EEEEecCCCCCCcCHHHHHHhcCC-CCeEEEEeC-
Confidence 999999 8999999999998876431 23445654 444454533578999999999975 678777543
Q ss_pred CCCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC-cccEEEecC--CccCCCC-CeeEEEEeCCCCCCCCC
Q 018318 191 AYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTT--HKSLRGP-RAGMIFYRKGPKPPKKG 266 (358)
Q Consensus 191 ~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~~~s~--~K~l~g~-~gG~i~~~~~~~~~~~~ 266 (358)
.+|...|+++|.++|+++|+++|+|++|+.|....+. .+. ..|++++|+ +|+++++ +||+++++++
T Consensus 160 ~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~---~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~------- 229 (399)
T 2oga_A 160 LYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGR---RIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDP------- 229 (399)
T ss_dssp GGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTE---ETTCTTCEEEEECCTTSSSCCSSCCEEEEESCH-------
T ss_pred CcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCe---ecccccCEEEEeCCCCccCCcCCceEEEEeCCH-------
Confidence 3567789999999999999999999999876433221 122 369999998 5998653 7899888753
Q ss_pred CCCCccccHHHHhhhhcCCCC--------cC---CCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-Cc
Q 018318 267 QPEGAVYDFEDKINFAVFPSL--------QG---GPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GY 334 (358)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~ 334 (358)
++.+.+......+. .+ ..+....+++.++++ .++.+.++..++++++.+.|.+. |+
T Consensus 230 -------~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~~g~ 297 (399)
T 2oga_A 230 -------ELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLA-----HLDSWNGRRSALAAEYLSGLAGLPGI 297 (399)
T ss_dssp -------HHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHTTTCTTC
T ss_pred -------HHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 44444433211110 01 112222222222222 23455677788899999999986 77
Q ss_pred eee
Q 018318 335 SLV 337 (358)
Q Consensus 335 ~~~ 337 (358)
++.
T Consensus 298 ~~~ 300 (399)
T 2oga_A 298 GLP 300 (399)
T ss_dssp BCC
T ss_pred ccc
Confidence 764
No 118
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.86 E-value=6e-21 Score=182.70 Aligned_cols=265 Identities=16% Similarity=0.185 Sum_probs=173.4
Q ss_pred EeccCCCC--CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHH
Q 018318 36 LIASENFT--SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAA 113 (358)
Q Consensus 36 l~a~~~~~--~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~ 113 (358)
|..+++.. |+.+.+++.+.+... .|+. ..+...+++ +.+++++|.+. .+++++|++|+..+
T Consensus 21 l~~~~p~~~~p~~~~~a~~~~~~~~---~y~~-----~~~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~~~ 83 (424)
T 2po3_A 21 LLVGRPNRIDRARLYERLDRALDSQ---WLSN-----GGPLVREFE----ERVAGLAGVRH-----AVATCNATAGLQLL 83 (424)
T ss_dssp EETTCCCCCCHHHHHHHHHHHHHHT---CCSS-----SCHHHHHHH----HHHHHHHTSSE-----EEEESCHHHHHHHH
T ss_pred ccccCCCCCChHHHHHHHHHHHhcC---Cccc-----CCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHH
Confidence 44444433 568999988776432 1211 024444555 78899999863 35667778899999
Q ss_pred HHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC
Q 018318 114 YTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP 193 (358)
Q Consensus 114 l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~ 193 (358)
+.++. +||+|+++.++|.++.. .+...|.. ++.++++++++.+|++++++++++ ++++|++++ .+|
T Consensus 84 l~~l~-~gd~Vlv~~~~~~~~~~---------~~~~~G~~--~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~tG 149 (424)
T 2po3_A 84 AHAAG-LTGEVIMPSMTFAATPH---------ALRWIGLT--PVFADIDPDTGNLDPDQVAAAVTP-RTSAVVGVH-LWG 149 (424)
T ss_dssp HHHHT-CCSEEEEESSSCTHHHH---------HHHHTTCE--EEEECBCTTTSSBCHHHHGGGCCT-TEEEEEEEC-GGG
T ss_pred HHHcC-CCCEEEECCCccHHHHH---------HHHHcCCE--EEEEecCCCcCCcCHHHHHHhhCc-CCcEEEEEC-CCC
Confidence 98875 79999999998876541 23445654 445555544678999999998865 688888764 356
Q ss_pred CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC-cccEEEecCC--ccCCCCCeeEEEEeCCCCCCCCCCCCC
Q 018318 194 RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTH--KSLRGPRAGMIFYRKGPKPPKKGQPEG 270 (358)
Q Consensus 194 ~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~~~s~~--K~l~g~~gG~i~~~~~~~~~~~~~~~~ 270 (358)
...++++|.++|+++|+++|+|++|+.|+...+. ++. ..|++++|+| |+|+++++|+++++++
T Consensus 150 ~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~----------- 215 (424)
T 2po3_A 150 RPCAADQLRKVADEHGLRLYFDAAHALGCAVDGR---PAGSLGDAEVFSFHATKAVNAFEGGAVVTDDA----------- 215 (424)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCCSSCEEEEESCH-----------
T ss_pred CcCCHHHHHHHHHHcCCEEEEECccccCCeECCe---ecccccCEEEEeCCCCCCccCCCCeEEEeCCH-----------
Confidence 6789999999999999999999999877654321 222 3588888887 8888888899999843
Q ss_pred ccccHHHHhhhhcCCCC--------cCCC-ChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-CceeeeCC
Q 018318 271 AVYDFEDKINFAVFPSL--------QGGP-HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGG 340 (358)
Q Consensus 271 ~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~ 340 (358)
++.+.+......+. .+.. ....++ .+.++... ..++.+.++..++++++.+.|.+. |+++...+
T Consensus 216 ---~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-aa~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 289 (424)
T 2po3_A 216 ---DLAARIRALHNFGFDLPGGSPAGGTNAKMSEAA-AAMGLTSL--DAFPEVIDRNRRNHAAYREHLADLPGVLVADHD 289 (424)
T ss_dssp ---HHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGG
T ss_pred ---HHHHHHHHHHhcCccccccccccCcCCCcCHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCC
Confidence 44444433211110 0100 111122 22333322 345678888899999999999987 88876422
Q ss_pred Cc----ceEEEEEcC
Q 018318 341 TE----NHLVLWDLR 351 (358)
Q Consensus 341 ~~----~~~~~v~~~ 351 (358)
.. -+++++.+.
T Consensus 290 ~~~~~~~~~~~i~~~ 304 (424)
T 2po3_A 290 RHGLNNHQYVIVEID 304 (424)
T ss_dssp GGSCCCCCCEEEEEC
T ss_pred CCCccccEEEEEEEC
Confidence 11 145556553
No 119
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.86 E-value=6.4e-21 Score=180.75 Aligned_cols=305 Identities=14% Similarity=0.031 Sum_probs=186.3
Q ss_pred CCccch--hhcccccccchHHHHHHHHHHHHhhcceeEeccC-CC---CCHHHHHHHhcccccCC--CCCCCCCCCCCCc
Q 018318 1 MDPVNE--WGNSSLETVDPEIHDLIEKEKRRQCRGIELIASE-NF---TSFAVIEALGSALTNKY--SEGMPGNRYYGGN 72 (358)
Q Consensus 1 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~-~~---~~~~V~~a~~~~~~~~~--~~g~~~~~~~~~~ 72 (358)
|-|.|- +.+.+...+++..+..+.+.. ..++.+.+..+. +. .++.+.+++.+.+.... ..+|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~------ 73 (397)
T 2zyj_A 1 MKPLSWSEAFGKGAGRIQASTIRELLKLT-QRPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPT------ 73 (397)
T ss_dssp CCCCCHHHHSCGGGGGCCCCHHHHHHHHH-TSTTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCT------
T ss_pred CCcccHHHHhhhhhcccCchHHHHHHhhc-cCCCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCC------
Confidence 445552 256666666666554443332 234566775442 22 46788888877664310 0123211
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCccccccCC-hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCccccccc
Q 018318 73 EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSG-SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATS 151 (358)
Q Consensus 73 ~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sG-t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g 151 (358)
....+++ +.+++++|++++ .|++++| ++|+..++.+++++||+|++..+.|.++.. .+...|
T Consensus 74 ~~~~~l~----~~la~~~g~~~~----~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~---------~~~~~g 136 (397)
T 2zyj_A 74 EGYAPLR----AFVAEWIGVRPE----EVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQ---------AFRLQG 136 (397)
T ss_dssp TCCHHHH----HHHHHHHTSCGG----GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH---------HHHTTC
T ss_pred CCCHHHH----HHHHHHhCCChh----hEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH---------HHHHcC
Confidence 1223454 678888887653 2445554 679999999999999999999988876431 223456
Q ss_pred ceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEE-EEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhc
Q 018318 152 IYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLI-ICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAA 225 (358)
Q Consensus 152 ~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v-~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~ 225 (358)
..+ +.++.+. + .+|++++++++++.++++| ++++++|+ ...| +++|.++|++||+++|+|++|+.+ ...
T Consensus 137 ~~~--~~~~~~~-~-~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~ 211 (397)
T 2zyj_A 137 PRF--LTVPAGE-E-GPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYREL-YFG 211 (397)
T ss_dssp CEE--EEEEEET-T-EECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTC-BCS
T ss_pred CEE--EecCcCC-C-CCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccc-cCC
Confidence 544 4444442 3 3999999999976578887 45666655 4444 559999999999999999998643 222
Q ss_pred cccCCCCC--ccc------EEEecCCccCC-CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHH
Q 018318 226 QEAANPFE--YCH------IVTTTTHKSLR-GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQI 296 (358)
Q Consensus 226 ~~~~~~~~--~~d------~~~~s~~K~l~-g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (358)
+....++. +.| ++++|+||+++ |.+.|++++++ ++.+.+.........+ .+....
T Consensus 212 g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~---------------~~~~~l~~~~~~~~~~-~~~~~~ 275 (397)
T 2zyj_A 212 EARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHP---------------EALQKLVQAKQGADLH-TPMLNQ 275 (397)
T ss_dssp SCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCH---------------HHHHHHHHHHHHHHSS-CCHHHH
T ss_pred CCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCH---------------HHHHHHHHHHHhhcCC-CCHHHH
Confidence 21111221 222 88999999986 34569999876 4555444321111112 233333
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC---CceeeeCCCcceEEEEEcC
Q 018318 297 GALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK---GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 297 ~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---G~~~~~~~~~~~~~~v~~~ 351 (358)
+++..+++......++...+++.++++++.+.|++. |+++.. +..++.+|+++.
T Consensus 276 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~-~~~g~~~~~~~~ 332 (397)
T 2zyj_A 276 MLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTR-PKGGMFVWMELP 332 (397)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECC-CSBSSEEEEECS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEcc-CCccEEEEEEcC
Confidence 333333332100234666777888999999999875 788764 456778899874
No 120
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.86 E-value=9.1e-20 Score=171.20 Aligned_cols=271 Identities=17% Similarity=0.177 Sum_probs=179.0
Q ss_pred eeEeccCCC--CCHHHHHHHhcccccCC--CCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCC--CCCCCCccccccCC-
Q 018318 34 IELIASENF--TSFAVIEALGSALTNKY--SEGMPGNRYYGGNEFIDEIENLCRSRALQTFHL--DPTQWGVNVQPYSG- 106 (358)
Q Consensus 34 ~~l~a~~~~--~~~~V~~a~~~~~~~~~--~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~--~~~~~~~~v~~~sG- 106 (358)
+.|..+++. .++.+.+++.+.+.... ..+|+. ... .++++.+.+++++.+|. +++ .|++++|
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~~-~~l~~~la~~l~~~~g~~~~~~----~v~~~~G~ 101 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELNRYPE------RDA-VELRDELAAYITKQTGVAVTRD----NLWAANGS 101 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCC------TTC-HHHHHHHHHHHHHHHCCCCCGG----GEEEESHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCC------ccH-HHHHHHHHHhhhhcccCCCChH----hEEECCCh
Confidence 666666553 47899999988764320 112221 112 35665555666665554 432 3555655
Q ss_pred hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEE
Q 018318 107 SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLII 186 (358)
Q Consensus 107 t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~ 186 (358)
++++..++.+++++||+|++..+.|.++.. .+...|..+ ++++.+ +++.+|++++++++++.++++|+
T Consensus 102 ~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~---------~~~~~g~~~--~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~ 169 (369)
T 3cq5_A 102 NEILQQLLQAFGGPGRTALGFQPSYSMHPI---------LAKGTHTEF--IAVSRG-ADFRIDMDVALEEIRAKQPDIVF 169 (369)
T ss_dssp HHHHHHHHHHHCSTTCEEEEEESSCTHHHH---------HHHHTTCEE--EEEECC-TTSSCCHHHHHHHHHHHCCSEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCChHHHHH---------HHHHcCCEE--EEecCC-cCCCCCHHHHHHHhhccCCCEEE
Confidence 568989999999999999999998876531 233456544 444444 35689999999999754789988
Q ss_pred EcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--c-ccEEEecCCccCC--CCCeeEEEEeCC
Q 018318 187 CGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--Y-CHIVTTTTHKSLR--GPRAGMIFYRKG 259 (358)
Q Consensus 187 ~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~-~d~~~~s~~K~l~--g~~gG~i~~~~~ 259 (358)
+++++|+ ...|++++.++|+.+++++|+|++|+.+....... ...+ + .+++++|+||+++ |.+.|++++++
T Consensus 170 ~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~- 247 (369)
T 3cq5_A 170 VTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSAT-TLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANP- 247 (369)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGG-GGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECT-
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchH-HHHhhCCCCEEEEEechHhcCCcccceEEEEeCH-
Confidence 8777664 67799999999999999999999987543110100 0112 3 5689999999984 44569999976
Q ss_pred CCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeC
Q 018318 260 PKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTG 339 (358)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~ 339 (358)
++.+.+.....++ +++....+++..+++. ...++...++..++++++.+.|++.|+++..
T Consensus 248 --------------~~~~~l~~~~~~~---~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~- 307 (369)
T 3cq5_A 248 --------------AFIDAVMLVRLPY---HLSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAARLEELGYAVVP- 307 (369)
T ss_dssp --------------HHHHHHHTTSCTT---CSCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHHHHHHHTCEEEC-
T ss_pred --------------HHHHHHHHcCCCC---CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCEECC-
Confidence 4555555432222 2344444444444442 1235677888899999999999988998864
Q ss_pred CCcceEEEEEc
Q 018318 340 GTENHLVLWDL 350 (358)
Q Consensus 340 ~~~~~~~~v~~ 350 (358)
..++.+|+++
T Consensus 308 -~~~~~~~~~~ 317 (369)
T 3cq5_A 308 -SESNFVFFGD 317 (369)
T ss_dssp -CSSSEEEEEC
T ss_pred -CCCeEEEEEC
Confidence 3455678876
No 121
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.86 E-value=1.2e-20 Score=192.25 Aligned_cols=226 Identities=15% Similarity=0.059 Sum_probs=157.5
Q ss_pred HHHHHHHhcCCCCCCCCccccccCCh-HHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecc
Q 018318 82 CRSRALQTFHLDPTQWGVNVQPYSGS-PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK 160 (358)
Q Consensus 82 ~~~~la~~~g~~~~~~~~~v~~~sGt-~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 160 (358)
.++.+++++|.+. .+++++|+ .|+.+++.++++|||+|+++.++|.+++. .+...|+.+..++..
T Consensus 210 ~ee~la~l~G~d~-----~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~---------~~~~~G~~~v~v~~~ 275 (755)
T 2vyc_A 210 SEKYAARVFGADR-----SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ---------GLMLTGAKPVYMVPS 275 (755)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH---------HHHHHCCEEEEECCC
T ss_pred HHHHHHHHhCCCc-----eEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHH---------HHHHcCCEEEEEeCC
Confidence 4588999999875 25567775 68999999999999999999998876541 234456544433332
Q ss_pred cCCCC---CCC-----CHHHHHHHHhhc-CC--------cEEEEcCCC-CCCccchHHHHHHHHHhCCEEEEechhhhhh
Q 018318 161 VNSST---GYI-----DYDKLEEKALDF-RP--------KLIICGGSA-YPRDWDYARFRAVADKCGALLLCDMAHISGL 222 (358)
Q Consensus 161 ~~~~~---~~i-----d~~~l~~~l~~~-~~--------~~v~~~~~~-~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~ 222 (358)
.+ +. +.+ |+++++++++++ ++ ++|++++++ .|.+.|+++|+++|++||+++++|+||+.++
T Consensus 276 ~~-~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~ 354 (755)
T 2vyc_A 276 RN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_dssp BC-TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCTTG
T ss_pred CC-ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCchhc
Confidence 11 11 235 999999999763 23 377777664 4667899999999999999999999997654
Q ss_pred hhcccc--CCCCCc--ccE------EEecCCccCCCCC-eeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCC
Q 018318 223 VAAQEA--ANPFEY--CHI------VTTTTHKSLRGPR-AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGP 291 (358)
Q Consensus 223 ~~~~~~--~~~~~~--~d~------~~~s~~K~l~g~~-gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (358)
...+.. ..++.+ +|+ +++|+||+++|++ ||+++++++.. .+ +. ..+.........+++
T Consensus 355 ~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~-------~i---~~-~~~~~~~~~~~s~sp 423 (755)
T 2vyc_A 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRG-------AI---NF-SRFNQAYMMHATTSP 423 (755)
T ss_dssp GGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBT-------CC---CH-HHHHHHHHHTSCSSC
T ss_pred ccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCccc-------cc---CH-HHHHHHHHHhCCCCH
Confidence 332211 112224 565 9999999999987 57787776400 01 11 112221111223568
Q ss_pred ChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-C
Q 018318 292 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-G 333 (358)
Q Consensus 292 ~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G 333 (358)
++..++++.+|++.+...+..++.++..++++++++.|.++ |
T Consensus 424 ~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~ 466 (755)
T 2vyc_A 424 LYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK 466 (755)
T ss_dssp CHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88889999999988765546788999999999999999886 5
No 122
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.86 E-value=1.5e-20 Score=180.40 Aligned_cols=286 Identities=16% Similarity=0.089 Sum_probs=173.0
Q ss_pred eeEeccCCCC-CHHHHHHHhcccccCCC--CCCCCC---CCCCCchhHHHHHHHHHHHHHHhcC----CCCCCCCccccc
Q 018318 34 IELIASENFT-SFAVIEALGSALTNKYS--EGMPGN---RYYGGNEFIDEIENLCRSRALQTFH----LDPTQWGVNVQP 103 (358)
Q Consensus 34 ~~l~a~~~~~-~~~V~~a~~~~~~~~~~--~g~~~~---~~~~~~~~~~~le~~~~~~la~~~g----~~~~~~~~~v~~ 103 (358)
+.|..+++.. .+.+.+++.+......- .|..++ ..|.......++++.+.+++.+.++ ++.+ ..+++
T Consensus 41 i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~---~v~~~ 117 (435)
T 3piu_A 41 IQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN---HLVLT 117 (435)
T ss_dssp EECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG---GEEEE
T ss_pred EEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH---HEEEc
Confidence 4555566654 56777776654331110 010000 0111122234666444455544433 4443 23555
Q ss_pred cCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccc-cccceeEEeecccCCC-CCCCCHHHHHHHHhhc-
Q 018318 104 YSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS-ATSIYFESLPYKVNSS-TGYIDYDKLEEKALDF- 180 (358)
Q Consensus 104 ~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~-~~~id~~~l~~~l~~~- 180 (358)
++|++|+..++.+++++||.|++..+.|+++.. .+. ..|..+ ++++.+.+ ++.+|++++++++++.
T Consensus 118 ~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~---------~~~~~~g~~~--~~~~~~~~~~~~~d~~~l~~~l~~~~ 186 (435)
T 3piu_A 118 AGATSANETFIFCLADPGEAVLIPTPYYPGFDR---------DLKWRTGVEI--VPIHCTSSNGFQITETALEEAYQEAE 186 (435)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HTTTTTCCEE--EEEECCGGGTSCCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhcCCCCeEEECCCccccHHH---------HHHHhcCCEE--EEeeCCCccCCcCCHHHHHHHHHHHH
Confidence 666789999999999999999999998876542 122 356544 44444322 3568999999999752
Q ss_pred ----CCcEEEEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC-C-c-----------cc--
Q 018318 181 ----RPKLIICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF-E-Y-----------CH-- 236 (358)
Q Consensus 181 ----~~~~v~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~-~-~-----------~d-- 236 (358)
++++|++++++|| ... ++++|.++|++||+++|+|++|+.+ .+.+....++ . . .|
T Consensus 187 ~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 265 (435)
T 3piu_A 187 KRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGT-AFSSPSFISVMEVLKDRNCDENSEVWQRV 265 (435)
T ss_dssp HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG-CCSSSCCCCHHHHHHC-------CGGGGE
T ss_pred hcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCCCCCcCHHHhccccccccccCCCCCE
Confidence 6788888877765 333 4688999999999999999998643 2222111111 1 1 22
Q ss_pred EEEecCCccC--CCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhc--cHHHH
Q 018318 237 IVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAS--TPAFK 312 (358)
Q Consensus 237 ~~~~s~~K~l--~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~--~~~~~ 312 (358)
+++.|+||+| +|.+.|+++++++ .+.+.+....... +.+....+++.+++.... ...++
T Consensus 266 i~i~s~sK~~g~~G~r~G~~~~~~~--------------~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (435)
T 3piu_A 266 HVVYSLSKDLGLPGFRVGAIYSNDD--------------MVVAAATKMSSFG---LVSSQTQHLLSAMLSDKKLTKNYIA 328 (435)
T ss_dssp EEEEESSSSSCCGGGCEEEEEESCH--------------HHHHHHHHHGGGS---CCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEEeeecccCCCceeEEEEEeCCH--------------HHHHHHHHHhhcC---CCCHHHHHHHHHHhcChHHHHHHHH
Confidence 8889999998 3556799998664 4555444332222 122233333333333211 11235
Q ss_pred HHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcCC
Q 018318 313 AYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 313 ~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~~ 352 (358)
+..+++.++++++++.|.+.|+++.. +..++.+|+++..
T Consensus 329 ~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~l~~ 367 (435)
T 3piu_A 329 ENHKRLKQRQKKLVSGLQKSGISCLN-GNAGLFCWVDMRH 367 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECC-CCSSSEEEEECGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccC-CCeeEEEEEEccc
Confidence 66778888999999999999998875 4556789998864
No 123
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.86 E-value=6.6e-21 Score=192.65 Aligned_cols=237 Identities=13% Similarity=0.016 Sum_probs=162.1
Q ss_pred HHHHHHHhcCCCCCCCCccccccCCh-HHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcc-cccccceeEEeec
Q 018318 82 CRSRALQTFHLDPTQWGVNVQPYSGS-PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKK-ISATSIYFESLPY 159 (358)
Q Consensus 82 ~~~~la~~~g~~~~~~~~~v~~~sGt-~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~ 159 (358)
+++.+|+++|++. + +++++|+ +|+.+++.++++|||+|++..++|.+++. . +.+.|+.+..++.
T Consensus 178 ~e~~lA~~~gae~----~-i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~---------~~~~l~Ga~~v~v~~ 243 (730)
T 1c4k_A 178 AEKHAARVYNADK----T-YFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYN---------SALAMAGGRPVYLQT 243 (730)
T ss_dssp HHHHHHHHTTCSE----E-EEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH---------HHTTTTCCEEEEECE
T ss_pred HHHHHHHHHCCCc----E-EEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHH---------HHHHHCCCEEEEEeC
Confidence 3488999999986 2 5567776 79999999999999999999998876542 2 3456654443333
Q ss_pred ccCC-C-CCCCCHHHH-----HHHHhhcC-----C----cEEEEcCCC-CCCccchHHHHHHHHHhCCEEEEechhhhhh
Q 018318 160 KVNS-S-TGYIDYDKL-----EEKALDFR-----P----KLIICGGSA-YPRDWDYARFRAVADKCGALLLCDMAHISGL 222 (358)
Q Consensus 160 ~~~~-~-~~~id~~~l-----~~~l~~~~-----~----~~v~~~~~~-~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~ 222 (358)
..+. . .+.+|++++ ++++++++ + ++|++++++ .|.+.|+++|+++|++||+++++|+||+.++
T Consensus 244 ~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDeAh~~~~ 323 (730)
T 1c4k_A 244 NRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE 323 (730)
T ss_dssp EECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred CccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEccccccc
Confidence 2110 0 134788888 88887531 3 788777664 4567899999999999999999999997654
Q ss_pred hhcccc----CCCCC--ccc----EEEecCCccCCCCCe-eEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCC
Q 018318 223 VAAQEA----ANPFE--YCH----IVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGP 291 (358)
Q Consensus 223 ~~~~~~----~~~~~--~~d----~~~~s~~K~l~g~~g-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (358)
...+.. +...+ ++| ++++|+||+++|+++ |+++++++... .....+ +. ..+.........+++
T Consensus 324 ~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~--g~~~~i---~~-~~~~~~~~~~~stsp 397 (730)
T 1c4k_A 324 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIK--GQLRYC---DH-KHFNNSFNLFMSTSP 397 (730)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGT--TSTTCC---CH-HHHHHHHHHHSCSSC
T ss_pred ccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhc--Cccccc---CH-HHHHHHHHHhCCCCC
Confidence 332211 12221 677 999999999998875 77777765210 000111 11 122221111223567
Q ss_pred ChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh--CCceeee
Q 018318 292 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG--KGYSLVT 338 (358)
Q Consensus 292 ~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~G~~~~~ 338 (358)
++..++++.+|++.+..++..++++++.++++++++.|.+ .|++++.
T Consensus 398 ~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~ 446 (730)
T 1c4k_A 398 FYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFV 446 (730)
T ss_dssp CHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESS
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEcc
Confidence 8888888888888765434577889999999999999998 5898864
No 124
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.86 E-value=3.5e-21 Score=179.90 Aligned_cols=272 Identities=11% Similarity=0.033 Sum_probs=168.1
Q ss_pred hhcceeEeccCCCC--CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCCh
Q 018318 30 QCRGIELIASENFT--SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGS 107 (358)
Q Consensus 30 ~~~~~~l~a~~~~~--~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt 107 (358)
..+.+.+..+++++ +|+|.+++.+.+... . +...+...+++ +++++++|.+. .+++++|+
T Consensus 12 ~~~~~~~~~~~~~~g~~p~v~~ai~~~~~~~--------~-~~~~~~~~~l~----~~la~~~~~~~-----~i~~~~g~ 73 (359)
T 3pj0_A 12 KTPYKLGGNGPRNVGVLTEALQNIDDNLESD--------I-YGNGAVIEDFE----TKIAKILGKQS-----AVFFPSGT 73 (359)
T ss_dssp TCSEESSSSSCCBHHHHHHHTTTSCTTCBCC--------B-TTBSHHHHHHH----HHHHHHHTCSE-----EEEESCHH
T ss_pred hcchhhcCCCccccCCCHHHHHHHHhhcccC--------c-ccCCHHHHHHH----HHHHHHhCCCc-----EEEeCCHH
Confidence 44566666777776 789998887643211 1 11234455555 88999999876 25668899
Q ss_pred HHHHHHHHhhcCCCCe-EEEec-CCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEE
Q 018318 108 PANFAAYTAVLEPHDR-IMGLD-LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185 (358)
Q Consensus 108 ~a~~~~l~a~~~~gd~-Vl~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v 185 (358)
+|+..++.+++++||+ |++.. +.|....... ......|. .+++++. +++.+|+++++++ ..++++|
T Consensus 74 ~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~------~~~~~~g~--~~~~v~~--~~~~~d~~~l~~~--~~~~~~v 141 (359)
T 3pj0_A 74 MAQQIALRIWADRKENRRVAYHPLSHLEIHEQD------GLKELQQI--TPLLLGT--ANQLLTIDDIKSL--REPVSSV 141 (359)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT------HHHHHHCC--EEEECSC--TTSCCCHHHHHTC--SSCCSEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEeccceeeehhcc------hHHHhcCc--eEEecCC--cCCCcCHHHHHhc--cCCceEE
Confidence 9999999999888887 44443 3222111000 00022354 4455544 3678999999988 3478999
Q ss_pred EEcCCCC---CCccc---hHHHHHHHHHhCCEEEEechhhhhhhhc-cccCCCC-CcccEEEecCCccCCCCCeeEEEEe
Q 018318 186 ICGGSAY---PRDWD---YARFRAVADKCGALLLCDMAHISGLVAA-QEAANPF-EYCHIVTTTTHKSLRGPRAGMIFYR 257 (358)
Q Consensus 186 ~~~~~~~---~~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~-~~~~~~~-~~~d~~~~s~~K~l~g~~gG~i~~~ 257 (358)
+++++++ |...+ +++|.++|++||+++|+|++|..+.... +.....+ .++|+++.|+||++++|.||+++.+
T Consensus 142 ~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~ 221 (359)
T 3pj0_A 142 LIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAGN 221 (359)
T ss_dssp EEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSCEEEEEC
T ss_pred EEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcceEEEECC
Confidence 9887754 34445 5556999999999999999976543211 1100111 2679999999999988877777776
Q ss_pred CCCCCCCCCCCCCccccHHHHhhhhc--CCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-Cc
Q 018318 258 KGPKPPKKGQPEGAVYDFEDKINFAV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GY 334 (358)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~ 334 (358)
+ ++.+.+.... +.....+ .....++...+++.. .+..++..++++++++.|+++ |+
T Consensus 222 ~---------------~l~~~~~~~~~~~~~~~~~-~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~g~ 280 (359)
T 3pj0_A 222 D---------------DFVQEAKIWKRRYGGDLIS-LYPYILSADYYFEKR-----IGKMAEYFEAAKGLAERFNSCSGV 280 (359)
T ss_dssp H---------------HHHHHHHHHHHHTTCCCSC-CHHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHHTSTTE
T ss_pred H---------------HHHHHHHHHHHHhCCCcch-hHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHhhCCCc
Confidence 6 4555544311 1111111 111111112233322 234556778899999999997 89
Q ss_pred eeeeCCCcceEEEEEcCC
Q 018318 335 SLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 335 ~~~~~~~~~~~~~v~~~~ 352 (358)
++...+..++.+|+++..
T Consensus 281 ~~~~~~~~~~~~~~~~~~ 298 (359)
T 3pj0_A 281 KTVPEVPVSNMFHVYFEN 298 (359)
T ss_dssp EEESSSCSSSEEEEEESS
T ss_pred eeeccCCcceEEEEEecC
Confidence 886334667788888753
No 125
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.86 E-value=1.1e-20 Score=189.83 Aligned_cols=223 Identities=14% Similarity=0.027 Sum_probs=158.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCccccccCCh-HHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccc
Q 018318 74 FIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGS-PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI 152 (358)
Q Consensus 74 ~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt-~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~ 152 (358)
.+.++| +.+|++||++. .+++++|+ .||.+++.++++|||+|+++.++|.++.. .+.+.|+
T Consensus 196 ~i~eaE----~~lA~~fGa~~-----a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~---------~l~lsGa 257 (715)
T 3n75_A 196 PHKEAE----QYIARVFNADR-----SYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTH---------LMMMSDV 257 (715)
T ss_dssp HHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH---------HHHHSCC
T ss_pred HHHHHH----HHHHHHhCCCC-----ceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHH---------HHHHcCC
Confidence 344555 88999999986 25668885 79999999999999999999998877542 2345665
Q ss_pred eeEEeecccCCCCCC----C-----CHHHHHHHHhhc-CCc---EEEEcCCC-CCCccchHHHHHHHHHhCCEEEEechh
Q 018318 153 YFESLPYKVNSSTGY----I-----DYDKLEEKALDF-RPK---LIICGGSA-YPRDWDYARFRAVADKCGALLLCDMAH 218 (358)
Q Consensus 153 ~~~~~~~~~~~~~~~----i-----d~~~l~~~l~~~-~~~---~v~~~~~~-~~~~~~l~~i~~la~~~g~~lvvD~a~ 218 (358)
.. ++++.+.+.+. + |+++++++++++ +++ +|++++++ +|.+.|+++|.++|++++ +++|+||
T Consensus 258 ~p--v~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livDEAH 333 (715)
T 3n75_A 258 TP--IYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAW 333 (715)
T ss_dssp EE--EEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEECTT
T ss_pred EE--EEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEcccc
Confidence 44 33332211222 3 899999999864 233 67666553 567789999999998764 7999999
Q ss_pred hhhhhhccccC--CCCC-c--ccEE---EecCCccCCCC-CeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcC
Q 018318 219 ISGLVAAQEAA--NPFE-Y--CHIV---TTTTHKSLRGP-RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQG 289 (358)
Q Consensus 219 ~~g~~~~~~~~--~~~~-~--~d~~---~~s~~K~l~g~-~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (358)
+.|+.+.+..+ ..+. + +|++ ++|+||+++|+ +||+++++++. ...++.........+
T Consensus 334 ~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i--------------~~~~~~~~~~~~~ST 399 (715)
T 3n75_A 334 VPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDV--------------NEETFNEAYMMHTTT 399 (715)
T ss_dssp CTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCC--------------CHHHHHHHHHHTSCS
T ss_pred ccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchh--------------hHHHHHHHHHhhcCC
Confidence 87764433332 2233 2 6765 89999999997 56898888751 112233322223356
Q ss_pred CCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 018318 290 GPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (358)
Q Consensus 290 ~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (358)
++++..++++.+|++.+...+..++++++.+++++|++.|+++
T Consensus 400 Spsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i 442 (715)
T 3n75_A 400 SPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRL 442 (715)
T ss_dssp SCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh
Confidence 7888999999989887653345678899999999999999875
No 126
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.85 E-value=2.1e-20 Score=178.25 Aligned_cols=284 Identities=18% Similarity=0.132 Sum_probs=175.5
Q ss_pred cceeEeccC------CCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh------cC--CCCCCC
Q 018318 32 RGIELIASE------NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQT------FH--LDPTQW 97 (358)
Q Consensus 32 ~~~~l~a~~------~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~------~g--~~~~~~ 97 (358)
+.+.|..+. ..+++.|.+++.+.+......+|+. .....++++.+.+++.+. .| ++.+
T Consensus 34 ~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~-- 105 (416)
T 1bw0_A 34 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFP------TVGSPEAREAVATWWRNSFVHKEELKSTIVKD-- 105 (416)
T ss_dssp CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCC------TTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGG--
T ss_pred CeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCC------CCCCHHHHHHHHHHHHhhhcccccCCCCCCcc--
Confidence 346666543 3458999999988775321122321 112335553333444321 11 4443
Q ss_pred CccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCC-CCCCCHHHHHHH
Q 018318 98 GVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS-TGYIDYDKLEEK 176 (358)
Q Consensus 98 ~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~ 176 (358)
..+++++|++|+..++.+++++||+|++..+.|.++.. .+...|..+..+++ +.+ ++.+|+++++++
T Consensus 106 -~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~---------~~~~~g~~~~~v~~--~~~~~~~~d~~~l~~~ 173 (416)
T 1bw0_A 106 -NVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYET---------VCKAYGIGMHFYNC--RPENDWEADLDEIRRL 173 (416)
T ss_dssp -GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH---------HHHHTTCEEEEEEE--EGGGTTEECHHHHHHH
T ss_pred -eEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHH---------HHHHcCcEEEEeec--CcccCCCCCHHHHHHH
Confidence 22444455679999999999999999999998876431 23445654444443 322 356999999999
Q ss_pred HhhcCCcEEEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccc----cCCCC---C--cccEEEecC
Q 018318 177 ALDFRPKLIICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQE----AANPF---E--YCHIVTTTT 242 (358)
Q Consensus 177 l~~~~~~~v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~----~~~~~---~--~~d~~~~s~ 242 (358)
+++ ++++|++++++|+ ...| +++|.++|++||+++|+|++|+. +.+.+. ...++ . ..+++++|+
T Consensus 174 l~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~ 251 (416)
T 1bw0_A 174 KDD-KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAG-MVFKGKDPNATFTSVADFETTVPRVILGGT 251 (416)
T ss_dssp CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTT-CBCCSSCTTCCCCCTTSSCCSCCEEEEEES
T ss_pred hcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCCCCccCHHHccCCCcEEEEecc
Confidence 865 6788877777765 4556 99999999999999999999764 333222 11122 1 224778999
Q ss_pred CccCC--CCCeeEEEEeCC--CCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHH
Q 018318 243 HKSLR--GPRAGMIFYRKG--PKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQV 318 (358)
Q Consensus 243 ~K~l~--g~~gG~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~ 318 (358)
+|+++ |.+.|+++++++ .. . .+...+...... ..+++....+++..+++......+++..+++
T Consensus 252 sK~~~~~Glr~G~~~~~~~~~~~---------~--~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 318 (416)
T 1bw0_A 252 AKNLVVPGWRLGWLLYVDPHGNG---------P--SFLEGLKRVGML--VCGPCTVVQAALGEALLNTPQEHLDQIVAKI 318 (416)
T ss_dssp TTTTSCGGGCCEEEEEECTTCSC---------H--HHHHHHHHHHHH--HTCSCHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred hhhCCCCCceEEEEEeeCchhhH---------H--HHHHHHHHHhcc--ccCCCcHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99863 556799998763 11 0 222222211100 1123445555555555532233457788889
Q ss_pred HHHHHHHHHHHhhC-CceeeeCCCcceEEEEEcC
Q 018318 319 KANAVALGNYLTGK-GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 319 ~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~v~~~ 351 (358)
.++++++.+.|++. |+++.. +..+..+|+.+.
T Consensus 319 ~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~ 351 (416)
T 1bw0_A 319 EESAMYLYNHIGECIGLAPTM-PRGAMYLMSRID 351 (416)
T ss_dssp HHHHHHHHHHHTTSTTEEECC-CCBTTEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCcccC-CCeeEEEEEeCC
Confidence 99999999999987 888764 345666787764
No 127
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.85 E-value=6.5e-20 Score=176.25 Aligned_cols=217 Identities=15% Similarity=0.099 Sum_probs=150.5
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCccccccc
Q 018318 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATS 151 (358)
Q Consensus 72 ~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g 151 (358)
.+...++| +++++++|++. .+++++|++|+..++.+++++||+|+++.+.|++.+... . ..+...|
T Consensus 113 ~~~~~~l~----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~--~---~~~~~~G 178 (445)
T 1qgn_A 113 NPTTVVLE----EKISALEGAES-----TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFI--E---TILPKMG 178 (445)
T ss_dssp CHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHH--H---HTGGGGT
T ss_pred ChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHH--H---HHHHHcC
Confidence 45555565 78999999874 377899999999999999999999999998887643210 0 0123345
Q ss_pred ceeEEeecccCCCCCCCCHHHHHHHHhhcCC-cEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhcccc
Q 018318 152 IYFESLPYKVNSSTGYIDYDKLEEKALDFRP-KLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEA 228 (358)
Q Consensus 152 ~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~-~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~ 228 (358)
. ++..++. .|++++++++++ ++ ++|++++++|+ .+.|+++|.++|++||+++|+|++|+.+...
T Consensus 179 ~--~v~~v~~------~d~~~l~~ai~~-~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~---- 245 (445)
T 1qgn_A 179 I--TATVIDP------ADVGALELALNQ-KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ---- 245 (445)
T ss_dssp C--EEEEECS------SCHHHHHHHHHH-SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC----
T ss_pred C--EEEEeCC------CCHHHHHHHhcc-CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC----
Confidence 4 3444432 289999999986 67 99998887765 5789999999999999999999999866421
Q ss_pred CCCCC-cccEEEecCCccCCCCC---eeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHH
Q 018318 229 ANPFE-YCHIVTTTTHKSLRGPR---AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALK 304 (358)
Q Consensus 229 ~~~~~-~~d~~~~s~~K~l~g~~---gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~ 304 (358)
.+++ ++|++++|+||+++|+. +|++++++ ++.+.+...... ..+..+.... ..+++
T Consensus 246 -~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~---------------~l~~~l~~~~~~-~g~~~~~~~a---~~~~~ 305 (445)
T 1qgn_A 246 -KALALGADLVLHSATKFLGGHNDVLAGCISGPL---------------KLVSEIRNLHHI-LGGALNPNAA---YLIIR 305 (445)
T ss_dssp -CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECH---------------HHHHHHHHHHHH-HCCCCCHHHH---HHHHH
T ss_pred -CccccCCEEEEECCcccccccccceEEEEEECH---------------HHHHHHHHHHHH-hCCCCCHHHH---HHHHH
Confidence 3345 89999999999987664 89998877 344444322111 0111222111 12222
Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhhC-Cc-eee
Q 018318 305 QASTPAFKAYAKQVKANAVALGNYLTGK-GY-SLV 337 (358)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~-~~~ 337 (358)
.+ +.+..+++++.++++++.++|+++ ++ .++
T Consensus 306 ~l--~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~ 338 (445)
T 1qgn_A 306 GM--KTLHLRVQQQNSTALRMAEILEAHPKVRHVY 338 (445)
T ss_dssp HG--GGHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred hH--HHHHHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 22 234566778888999999999987 45 444
No 128
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.85 E-value=1.5e-20 Score=179.34 Aligned_cols=220 Identities=11% Similarity=0.073 Sum_probs=150.2
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccc
Q 018318 62 GMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYT 141 (358)
Q Consensus 62 g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~ 141 (358)
++...++ +.+..+++| +++++++|.+. .+++++|++|+..++.+++++||+|++..++|++.+....
T Consensus 73 ~~~y~r~--~~p~~~~le----~~lA~l~g~~~-----~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~-- 139 (415)
T 2fq6_A 73 ELFYGRR--GTLTHFSLQ----QAMCELEGGAG-----CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCS-- 139 (415)
T ss_dssp SCCCTTT--CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHH--
T ss_pred CccccCC--CCchHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH--
Confidence 3444443 446666776 78999999874 3667899999999999999999999999998876542110
Q ss_pred cCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHH--hCCEEEEech
Q 018318 142 SGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADK--CGALLLCDMA 217 (358)
Q Consensus 142 ~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~--~g~~lvvD~a 217 (358)
..+...|. ++.+++. .|++++++++++ ++++|++++++|+ .+.|+++|+++|++ +|+++++|++
T Consensus 140 ---~~l~~~G~--~v~~v~~------~d~~~le~ai~~-~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a 207 (415)
T 2fq6_A 140 ---KILSKLGV--TTSWFDP------LIGADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNT 207 (415)
T ss_dssp ---HTGGGGTC--EEEEECT------TCGGGGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECT
T ss_pred ---HHHHHcCc--EEEEECC------CCHHHHHHhhcc-CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECC
Confidence 01223454 3444432 388999999875 6899988877765 67899999999999 9999999999
Q ss_pred hhhhhhhccccCCCCC-cccEEEecCCccCCCCC---eeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCCh
Q 018318 218 HISGLVAAQEAANPFE-YCHIVTTTTHKSLRGPR---AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHN 293 (358)
Q Consensus 218 ~~~g~~~~~~~~~~~~-~~d~~~~s~~K~l~g~~---gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (358)
|+.+... .++. ++|++++|+||+++++. +|+++++++ +.+.+...... .|+...
T Consensus 208 ~a~~~~~-----~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~---------------~~~~l~~~~~~--~G~~~~ 265 (415)
T 2fq6_A 208 WAAGVLF-----KALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR---------------CWEQLRENAYL--MGQMVD 265 (415)
T ss_dssp TTTTTSS-----CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTT---------------THHHHHHHHHH--TTCCCC
T ss_pred CcccccC-----CccccCCeEEEEeCccccCCCCCceEEEEEeCHH---------------HHHHHHHHHHh--cCCCCC
Confidence 8865321 2344 89999999999987654 689888774 22333321110 111111
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 018318 294 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (358)
Q Consensus 294 ~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (358)
+. .+ ..+++.+ +.+..+.++..+|++.++++|.+.
T Consensus 266 ~~-~a-~~~~~~l--~~l~~r~~~~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 266 AD-TA-YITSRGL--RTLGVRLRQHHESSLKVAEWLAEH 300 (415)
T ss_dssp HH-HH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HH-HH-HHHHhhh--hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 21 11 1122221 234567788889999999999886
No 129
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.85 E-value=3.6e-20 Score=176.76 Aligned_cols=217 Identities=17% Similarity=0.179 Sum_probs=150.3
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccc
Q 018318 71 GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT 150 (358)
Q Consensus 71 ~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (358)
+.+....+| +++++++|.+. .++++||++|+..++.++++|||+|++..+.|++...... ......
T Consensus 79 ~~p~~~~l~----~~la~~~g~~~-----~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~-----~~~~~~ 144 (414)
T 3ndn_A 79 GNPTVSVFE----ERLRLIEGAPA-----AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCS-----EILPRW 144 (414)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHH-----THHHHT
T ss_pred CChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHH-----HHHHHc
Confidence 446666776 78999999764 4778899999999999999999999999998876432110 001224
Q ss_pred cceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhcccc
Q 018318 151 SIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEA 228 (358)
Q Consensus 151 g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~ 228 (358)
|. ++++++. .|++++++++++ ++++|++++++|+ ...|+++|.++|++||+++|+|++|+.|...
T Consensus 145 g~--~~~~v~~------~d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~---- 211 (414)
T 3ndn_A 145 GV--QTVFVDG------DDLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQ---- 211 (414)
T ss_dssp TC--EEEEECT------TCHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC----
T ss_pred Cc--EEEEeCC------CCHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccC----
Confidence 54 3444432 289999999975 7899998887766 5779999999999999999999999866432
Q ss_pred CCCCC-cccEEEecCCccCCC---CCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHH
Q 018318 229 ANPFE-YCHIVTTTTHKSLRG---PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALK 304 (358)
Q Consensus 229 ~~~~~-~~d~~~~s~~K~l~g---~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~ 304 (358)
.++. ++|+++.|++|++++ +++|+++++++ .+.+.+...... .+..... .. .+.+++
T Consensus 212 -~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~--------------~~~~~l~~~~~~--~g~~~~~-~~-a~~~~~ 272 (414)
T 3ndn_A 212 -QGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDRE--------------YIDGPVQKLMRH--TGPAMSA-FN-AWVLLK 272 (414)
T ss_dssp -CCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHH--------------HHTTHHHHHHHH--HCCCCCH-HH-HHHHHH
T ss_pred -CchhcCCCeEeccCCccccCCCCceEEEEEECHH--------------HHHHHHHHHHHH--cCCCCCH-HH-HHHHHH
Confidence 3344 789999999999865 45799998774 122122211100 0111111 11 223333
Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhhC-Cce
Q 018318 305 QASTPAFKAYAKQVKANAVALGNYLTGK-GYS 335 (358)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~ 335 (358)
.+ +.+..+.+++.++++++.++|++. ++.
T Consensus 273 ~l--~~l~~r~~~~~~~a~~l~~~L~~~p~v~ 302 (414)
T 3ndn_A 273 GL--ETLAIRVQHSNASAQRIAEFLNGHPSVR 302 (414)
T ss_dssp HG--GGHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHhcCCCEe
Confidence 33 235677888999999999999886 443
No 130
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.85 E-value=8.3e-20 Score=174.88 Aligned_cols=281 Identities=16% Similarity=0.107 Sum_probs=173.5
Q ss_pred ceeEeccCCCC-CHHHHHHHhcccccC--------C--CCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC----CCCCCC
Q 018318 33 GIELIASENFT-SFAVIEALGSALTNK--------Y--SEGMPGNRYYGGNEFIDEIENLCRSRALQTFH----LDPTQW 97 (358)
Q Consensus 33 ~~~l~a~~~~~-~~~V~~a~~~~~~~~--------~--~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g----~~~~~~ 97 (358)
.+.|..+++.. ++.+.+++....... . ...|+. .....++++.+.+++.+.+| ++++
T Consensus 38 ~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~------~~g~~~lr~~la~~~~~~~g~~~~~~~~-- 109 (428)
T 1iay_A 38 VIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQD------YHGLPEFRKAIAKFMEKTRGGRVRFDPE-- 109 (428)
T ss_dssp BEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCC------TTCCHHHHHHHHHHHHHHTTTCSCCCTT--
T ss_pred eeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCC------CCCcHHHHHHHHHHHHHhcCCCCCCChh--
Confidence 45666666654 567777776432100 0 011221 11134566555566665555 4443
Q ss_pred CccccccCC-hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCC-CCCCCHHHHHH
Q 018318 98 GVNVQPYSG-SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS-TGYIDYDKLEE 175 (358)
Q Consensus 98 ~~~v~~~sG-t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~ 175 (358)
.+++++| ++++..++.++++|||+|++..+.|+++... .....|..+ ++++.+.+ ++.+|++++++
T Consensus 110 --~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~--------~~~~~g~~~--~~v~~~~~~~~~~d~~~l~~ 177 (428)
T 1iay_A 110 --RVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRD--------LRWRTGVQL--IPIHCESSNNFKITSKAVKE 177 (428)
T ss_dssp --SCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHH--------TTTTTCCEE--EEECCCTTTTTCCCHHHHHH
T ss_pred --hEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHH--------HHHhcCCEE--EEeecCCccCCcCCHHHHHH
Confidence 2445555 5799999999999999999999988765310 112355543 44444322 45789999999
Q ss_pred HHhhc-----CCcEEEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC-C---c-------
Q 018318 176 KALDF-----RPKLIICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF-E---Y------- 234 (358)
Q Consensus 176 ~l~~~-----~~~~v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~-~---~------- 234 (358)
++++. ++++|++++++|| ...| +++|.++|++||+++|+|++|+.+ .+.+....++ . .
T Consensus 178 ~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 256 (428)
T 1iay_A 178 AYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT-VFDTPQFVSIAEILDEQEMTYCN 256 (428)
T ss_dssp HHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG-CCSSSCCCCHHHHHTSGGGTTSC
T ss_pred HHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccccc-ccCCCCccCHHHhccccccccCC
Confidence 98752 5788887777765 5567 899999999999999999998643 2222111111 1 2
Q ss_pred cc--EEEecCCccC--CCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHh--cc
Q 018318 235 CH--IVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQA--ST 308 (358)
Q Consensus 235 ~d--~~~~s~~K~l--~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~--~~ 308 (358)
.| +++.|+||++ +|.+.|+++++++ ++.+.+.....++ +.+....+++..++... ..
T Consensus 257 ~d~viv~~s~sK~~g~~Glr~G~~~~~~~--------------~~~~~~~~~~~~~---~~~~~~~~a~~~~l~~~~~~~ 319 (428)
T 1iay_A 257 KDLVHIVYSLSKDMGLPGFRVGIIYSFND--------------DVVNCARKMSSFG---LVSTQTQYFLAAMLSDEKFVD 319 (428)
T ss_dssp TTSEEEEEESTTTSSCGGGCEEEEEESCH--------------HHHHHHHHHHTTS---CCCHHHHHHHHHHTTCHHHHH
T ss_pred CCcEEEEecchhhcCCCCceEEEEEeCCH--------------HHHHHHHHHHhcc---cCCHHHHHHHHHHhcChHHHH
Confidence 57 8899999997 4556799998553 4555554432221 22333333333333211 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcCC
Q 018318 309 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~~ 352 (358)
..++...+++.++++++.+.|++.|+++.. +..+..+|+++..
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~ 362 (428)
T 1iay_A 320 NFLRESAMRLGKRHKHFTNGLEVVGIKCLK-NNAGLFCWMDLRP 362 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCC-CSSSSEEEEECGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccC-CCeeEEEEEechh
Confidence 123567778889999999999998988764 3467778998753
No 131
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.85 E-value=4.1e-20 Score=177.00 Aligned_cols=231 Identities=17% Similarity=0.098 Sum_probs=150.9
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccc
Q 018318 71 GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT 150 (358)
Q Consensus 71 ~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (358)
+.+...+|| +++++++|.+. .++++||++|+..++.++++|||+|++..+.|++...... ..+...
T Consensus 80 ~~p~~~~le----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~-----~~~~~~ 145 (430)
T 3ri6_A 80 SNPTVEDLE----QRLKNLTGALG-----VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQ-----KTLPSF 145 (430)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----THHHHT
T ss_pred CCHHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH-----HHHHHc
Confidence 446677777 78999999875 3778899999999999999999999999998876542110 012234
Q ss_pred cceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhcccc
Q 018318 151 SIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEA 228 (358)
Q Consensus 151 g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~ 228 (358)
|. +++.++. -|++++++++++ ++++|++++++|+ ...|+++|.++|+++|+++|+|++|+.+...
T Consensus 146 G~--~~~~v~~------~d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~---- 212 (430)
T 3ri6_A 146 GI--EVRFVDV------MDSLAVEHACDE-TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLL---- 212 (430)
T ss_dssp TC--EEEEECT------TCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTC----
T ss_pred CC--EEEEeCC------CCHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC----
Confidence 54 3444432 189999999975 7899998887765 5779999999999999999999998866432
Q ss_pred CCCCC-cccEEEecCCccCCCC---CeeEEEEeCCCCCCCCCCCCCcc------ccHHHHhhhhcCCCCcCCCChhHHHH
Q 018318 229 ANPFE-YCHIVTTTTHKSLRGP---RAGMIFYRKGPKPPKKGQPEGAV------YDFEDKINFAVFPSLQGGPHNHQIGA 298 (358)
Q Consensus 229 ~~~~~-~~d~~~~s~~K~l~g~---~gG~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~a 298 (358)
.+.. ++|+++.|++|+|+|+ .||+++.+.... ....+..... ..+...+....... .++...+ ..+
T Consensus 213 -~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~-~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~-~g~~~~~-~~a 288 (430)
T 3ri6_A 213 -EAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFE-WKSLPSLAPYYAKAGPMAFLYKARKEVFQN-LGPSLSP-HNA 288 (430)
T ss_dssp -CGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSC-GGGSTTTHHHHHHHGGGHHHHHHHHTHHHH-HCCCCCH-HHH
T ss_pred -ChHHcCCEEEEECCcccccCCCCceEEEEEECChHH-hhhccchhhhhhhhchhhHHHHHHHHHHHh-cCCCCCH-HHH
Confidence 2334 7999999999999776 578888644210 0000000000 00011111100001 1221112 111
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-Cce
Q 018318 299 LAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYS 335 (358)
Q Consensus 299 l~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~ 335 (358)
+.+++.+ +.+..++++..+|++++.++|++. +++
T Consensus 289 -~l~l~~l--~~l~~r~~~~~~na~~la~~L~~~p~v~ 323 (430)
T 3ri6_A 289 -YLQSLGL--ETMALRIERSCQNAQELAHWLLSIPQVK 323 (430)
T ss_dssp -HHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCTTCE
T ss_pred -HHHHhhh--hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 2222222 345677888999999999999887 565
No 132
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.85 E-value=2.6e-20 Score=176.97 Aligned_cols=249 Identities=18% Similarity=0.157 Sum_probs=156.9
Q ss_pred ceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHH
Q 018318 33 GIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFA 112 (358)
Q Consensus 33 ~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~ 112 (358)
...+.++++++.+.+.+++.. +... ..++...++ +.+...+++ +++++++|.+. .+++++|++|+..
T Consensus 29 ~~p~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~r~--~~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~a~~~ 95 (398)
T 1gc0_A 29 VPPVYQTATFTFPTVEYGAAC-FAGE-QAGHFYSRI--SNPTLNLLE----ARMASLEGGEA-----GLALASGMGAITS 95 (398)
T ss_dssp SCCBCCCSCBCCC-------------------------CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHH
T ss_pred CCCccCCCccccCCHHHHHHh-hcCC-cCCCcccCC--CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHH
Confidence 455667778887888777642 1111 112333332 345555665 78999999874 3778999999999
Q ss_pred HHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCC
Q 018318 113 AYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAY 192 (358)
Q Consensus 113 ~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~ 192 (358)
++.+++++||+|+++.+.|++...... ......|. ++..++. .|++++++++++ ++++|+++.++|
T Consensus 96 ~l~~~~~~gd~vl~~~~~~~~~~~~~~-----~~~~~~g~--~~~~~~~------~d~~~l~~~i~~-~~~~v~~~~~~n 161 (398)
T 1gc0_A 96 TLWTLLRPGDEVLLGNTLYGCTFAFLH-----HGIGEFGV--KLRHVDM------ADLQALEAAMTP-ATRVIYFESPAN 161 (398)
T ss_dssp HHHHHCCTTCEEEEESSCCSHHHHHHH-----HTGGGGTC--EEEEECT------TCHHHHHHHCCT-TEEEEEEESSCT
T ss_pred HHHHHhcCCCEEEEeCCCchhHHHHHH-----HHHHHcCC--EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCC
Confidence 999999999999999999887542110 00123454 3444432 489999999975 788998887766
Q ss_pred C--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC-cccEEEecCCccCCCCC---eeEEEEeCCCCCCCCC
Q 018318 193 P--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTHKSLRGPR---AGMIFYRKGPKPPKKG 266 (358)
Q Consensus 193 ~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~~~s~~K~l~g~~---gG~i~~~~~~~~~~~~ 266 (358)
+ ...|+++|.++|++||+++|+|++|+.+... .++. ++|++++|+||++++|. ||+++++++
T Consensus 162 ptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~-----~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~------- 229 (398)
T 1gc0_A 162 PNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQ-----RPLELGADLVVHSATKYLSGHGDITAGIVVGSQA------- 229 (398)
T ss_dssp TTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHC-----CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHH-------
T ss_pred CCcccccHHHHHHHHHHcCCEEEEECCCcccccC-----CchhhCceEEEECCccccCCCCCCeEEEEEEChH-------
Confidence 4 5779999999999999999999999876542 2234 78999999999997764 688888763
Q ss_pred CCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 018318 267 QPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (358)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (358)
.+.+.+.........++.+....+++..+++ .+..+.++..++++++.+.|.+.
T Consensus 230 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~ 283 (398)
T 1gc0_A 230 -------LVDRIRLQGLKDMTGAVLSPHDAALLMRGIK-----TLNLRMDRHCANAQVLAEFLARQ 283 (398)
T ss_dssp -------HHHHHHHTHHHHHTCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTC
T ss_pred -------HHHHHHHHHhhccCCCCCCHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHhcC
Confidence 2222333221110112223222222222222 24566778888999999999875
No 133
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.85 E-value=6.1e-21 Score=179.24 Aligned_cols=251 Identities=12% Similarity=0.084 Sum_probs=166.6
Q ss_pred EeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHH
Q 018318 36 LIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYT 115 (358)
Q Consensus 36 l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~ 115 (358)
+..+...+++ +.+++.+.+.... + ...+...+++ +.+++++|.+. .+++++|++|+..++.
T Consensus 11 l~~~~~~~~~-~~~~~~~~~~~~~---~------~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~~~~~ 71 (374)
T 3uwc_A 11 LERQFADIEP-YLNDLREFIKTAD---F------TLGAELEKFE----KRFAALHNAPH-----AIGVGTGTDALAMSFK 71 (374)
T ss_dssp HHHHTSSCHH-HHHHHHHHHHHTC---C------SSCHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHH
T ss_pred cccCCCCchH-HHHHHHHHHHcCC---c------ccChhHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHH
Confidence 3344455556 8888877664321 1 1224455555 78999999874 3677889999999999
Q ss_pred hh-cCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCCC
Q 018318 116 AV-LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 194 (358)
Q Consensus 116 a~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~~ 194 (358)
++ +++||+|++..++|.++.. .+...|.. ++.++++ +++.+|++++++++++ ++++|+.. +.+|.
T Consensus 72 ~~~~~~gd~v~~~~~~~~~~~~---------~~~~~g~~--~~~~~~~-~~~~~d~~~l~~~~~~-~~~~v~~~-n~~G~ 137 (374)
T 3uwc_A 72 MLNIGAGDEVITCANTFIASVG---------AIVQAGAT--PVLVDSE-NGYVIDPEKIEAAITD-KTKAIMPV-HYTGN 137 (374)
T ss_dssp HTTCCTTCEEEEESSSCHHHHH---------HHHHTTCE--EEEECBC-TTSSBCGGGTGGGCCT-TEEEECCB-CGGGC
T ss_pred HcCCCCCCEEEECCCccHHHHH---------HHHHcCCE--EEEEecC-CCCCcCHHHHHHhCCC-CceEEEEe-CCcCC
Confidence 99 9999999999998876431 23445654 4445544 4678999999999875 67777633 23556
Q ss_pred ccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC-cccEEEecCC--ccCCC-CCeeEEEEeCCCCCCCCCCCCC
Q 018318 195 DWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTH--KSLRG-PRAGMIFYRKGPKPPKKGQPEG 270 (358)
Q Consensus 195 ~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~~~s~~--K~l~g-~~gG~i~~~~~~~~~~~~~~~~ 270 (358)
..|+++|.++|++||+++|+|++|+.|....+. ... .+|++++|+| |++++ +.||+++++++
T Consensus 138 ~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~---~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~----------- 203 (374)
T 3uwc_A 138 IADMPALAKIAKKHNLHIVEDACQTILGRINDK---FVGSWGQFACFSLHPLKNLNVWSDAGVIITHSD----------- 203 (374)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECSSSSSSCCSSCCEEEEESCH-----------
T ss_pred cCCHHHHHHHHHHcCCEEEEeCCCccCceeCCe---eccccccEEEEeCCCCCcCCccceeEEEEeCCH-----------
Confidence 789999999999999999999999877543221 122 4699999977 99976 46788888764
Q ss_pred ccccHHHHhhhhcCCCC-------cCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCC--ceee
Q 018318 271 AVYDFEDKINFAVFPSL-------QGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKG--YSLV 337 (358)
Q Consensus 271 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G--~~~~ 337 (358)
++.+.+......+. ..+.+. .+..+.+++.....+.++.+.++..++++++.+.|.+.+ +++.
T Consensus 204 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 275 (374)
T 3uwc_A 204 ---EYAEKLRLYRNHGLINRDVCVEYGINC-RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVP 275 (374)
T ss_dssp ---HHHHHHHHHTBTTEEETTEESSCCCBC-BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECC
T ss_pred ---HHHHHHHHHHhcCccccCccccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEec
Confidence 34444333211100 001111 111222333322223467788889999999999999874 7664
No 134
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.84 E-value=6.2e-20 Score=172.47 Aligned_cols=234 Identities=15% Similarity=0.114 Sum_probs=154.8
Q ss_pred HHHHHhc-CCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccC
Q 018318 84 SRALQTF-HLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (358)
Q Consensus 84 ~~la~~~-g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (358)
+.+++++ +++++ ..+++++|++|+..++.++++|||+|++..+.|.++.. .+...|..+..++++.
T Consensus 70 ~~la~~~~~~~~~---~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~---------~~~~~g~~~~~v~~~~- 136 (375)
T 3op7_A 70 KSVSQLYTGVKPE---QILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD---------IPKSLGAEVDLWQIEE- 136 (375)
T ss_dssp HHHHTTSSSCCGG---GEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH---------HHHHTTCEEEEEEEEG-
T ss_pred HHHHHHhccCChh---hEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH---------HHHHcCCEEEEEeccc-
Confidence 6788877 45543 23555566889999999999999999999998876431 2344565444444432
Q ss_pred CCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cc
Q 018318 163 SSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YC 235 (358)
Q Consensus 163 ~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~ 235 (358)
++++.+|++++++++++ ++++|++++++++ ...| +++|.++|++||+++|+|++|+.. ...+ .+...+ +.
T Consensus 137 ~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~-~~~~-~~~~~~~~~~ 213 (375)
T 3op7_A 137 ENGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSF-SELD-VPSIIEVYDK 213 (375)
T ss_dssp GGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCC-SSSC-CCCHHHHCTT
T ss_pred cCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccC-CCchhhhcCC
Confidence 12456899999999975 7899988877665 4567 999999999999999999997642 2211 111111 45
Q ss_pred cEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHH
Q 018318 236 HIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKA 313 (358)
Q Consensus 236 d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~ 313 (358)
+++++|++|+++ |.++|++++++ ++.+.+......... +++....++...+++.. ...++.
T Consensus 214 ~i~~~s~sK~~~~~G~r~G~v~~~~---------------~l~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~-~~~~~~ 276 (375)
T 3op7_A 214 GIAVNSLSKTYSLPGIRIGWVAANH---------------QVTDILRDYRDYTMI-CAGVFDDLVAQLALAHY-QEILER 276 (375)
T ss_dssp EEEEEESSSSSSCGGGCCEEEECCH---------------HHHHHHTTTGGGTTS-CCCHHHHHHHHHHHHTH-HHHHHH
T ss_pred EEEEeEChhhcCCcccceEEEEeCH---------------HHHHHHHHHHhhhcc-CCCcHHHHHHHHHHhcc-HHHHHH
Confidence 688999999984 55679998855 466655543222211 22333333333444432 123456
Q ss_pred HHHHHHHHHHHHHHHHhhC-CceeeeCCCcceEEEEEcC
Q 018318 314 YAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 314 ~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~v~~~ 351 (358)
..++..++++++.+.|++. |+++.. +..++.+|+.+.
T Consensus 277 ~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~ 314 (375)
T 3op7_A 277 NRHILEENLAILDQWIEEEPLVSYIR-PAVVSTSFVKIA 314 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEECC-CSSSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhhCCCceEec-CCCeEEEeEEcC
Confidence 6677788999999999886 777654 445556777664
No 135
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.84 E-value=7.1e-20 Score=171.27 Aligned_cols=264 Identities=14% Similarity=0.128 Sum_probs=173.4
Q ss_pred cceeEeccCCC--CCHHHHHHHhcccccCC--CCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCCh
Q 018318 32 RGIELIASENF--TSFAVIEALGSALTNKY--SEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGS 107 (358)
Q Consensus 32 ~~~~l~a~~~~--~~~~V~~a~~~~~~~~~--~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt 107 (358)
+.+.|..+++. +++.|++++.+.+.... ..+|+.. ...+++ +++++++|++.++ .+++++|+
T Consensus 27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~-------~~~~lr----~~la~~~g~~~~~---i~~t~g~~ 92 (360)
T 3hdo_A 27 SWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSA-------SSQKLR----EVAGELYGFDPSW---IIMANGSD 92 (360)
T ss_dssp TSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCS-------SCHHHH----HHHHHHHTCCGGG---EEEESSHH
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCC-------chHHHH----HHHHHHhCcCcce---EEEcCCHH
Confidence 35667766554 47999999988775420 1133321 123444 7889999987642 34455567
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEE
Q 018318 108 PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC 187 (358)
Q Consensus 108 ~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~ 187 (358)
+|+..++.+++++||+|++..+.|.++.. .+...|.. ++.++.++ ++.+ ++++ +..++++|++
T Consensus 93 ~al~~~~~~l~~~gd~Vl~~~p~~~~~~~---------~~~~~g~~--~~~v~~~~-~~~~--~~l~---~~~~~~~v~i 155 (360)
T 3hdo_A 93 EVLNNLIRAFAAEGEEIGYVHPSYSYYGT---------LAEVQGAR--VRTFGLTG-DFRI--AGFP---ERYEGKVFFL 155 (360)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSSCTHHHH---------HHHHHTCE--EEEECBCT-TSSB--TTCC---SSBCSSEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEcCCChHHHHH---------HHHHCCCE--EEEeeCCC-CCCH--HHHH---hhcCCCEEEE
Confidence 89999999999999999999998876431 23345654 44445442 3344 4433 2235788888
Q ss_pred cCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC-C--cccEEEecCCccC--CCCCeeEEEEeCCC
Q 018318 188 GGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF-E--YCHIVTTTTHKSL--RGPRAGMIFYRKGP 260 (358)
Q Consensus 188 ~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~-~--~~d~~~~s~~K~l--~g~~gG~i~~~~~~ 260 (358)
++++|+ ...|+++|.++|+++|+++|+|++|+. +...+ ...+ + +.+++++|++|++ +|.+.|++++++
T Consensus 156 ~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~-~~~~~--~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-- 230 (360)
T 3hdo_A 156 TTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAE-FAESN--ALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARP-- 230 (360)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGG-GSSCC--CTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCH--
T ss_pred eCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHh-hCCcc--hhHHhccCCCEEEEecchHhhcCCccceeeEeeCH--
Confidence 877765 678999999999999999999999863 22111 1111 1 4458899999996 466779998866
Q ss_pred CCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCC
Q 018318 261 KPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGG 340 (358)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~ 340 (358)
++.+.+.....++ +.+....+++..+++. ...++...+++.++++++.+.|++.|+++..
T Consensus 231 -------------~~~~~~~~~~~~~---~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-- 290 (360)
T 3hdo_A 231 -------------EVIAALDKIRDHY---NLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIP-- 290 (360)
T ss_dssp -------------HHHHHHHHHSCSC---CSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECC--
T ss_pred -------------HHHHHHHHhCCCC---CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcC--
Confidence 4666665543221 2344444444555543 2335788888999999999999999998764
Q ss_pred CcceEEEEEcC
Q 018318 341 TENHLVLWDLR 351 (358)
Q Consensus 341 ~~~~~~~v~~~ 351 (358)
..+..+|+.+.
T Consensus 291 ~~~~~~~~~~~ 301 (360)
T 3hdo_A 291 SQGNYLFATPP 301 (360)
T ss_dssp CSSSEEEEECT
T ss_pred CCccEEEEECC
Confidence 34455777653
No 136
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.84 E-value=1.4e-19 Score=170.02 Aligned_cols=286 Identities=14% Similarity=0.047 Sum_probs=180.9
Q ss_pred chHHHHHHHHHHHHhh---cceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhc
Q 018318 16 DPEIHDLIEKEKRRQC---RGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF 90 (358)
Q Consensus 16 ~~~~~~~~~~~~~~~~---~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~ 90 (358)
+++.+..+.+..+..+ +.+.|..+.+. +|+.|.+++.+.+... .+|+.. ....++++.+.+++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~------~g~~~lr~~la~~l~~~~ 76 (376)
T 3ezs_A 5 EPYPFERLRALLKEITPKKRGLDLGIGEPQFETPKFIQDALKNHTHSL--NIYPKS------AFEESLRAAQRGFFKRRF 76 (376)
T ss_dssp CCCHHHHHHHHHTTCCCSSCCCBCSSCCCCSCCCHHHHHHHHTTGGGG--GSCCCT------TCCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHhhhccCCEEEeCCCCCCCCCCHHHHHHHHHhhhhc--CCCCCC------CCCHHHHHHHHHHHHHHh
Confidence 4555555554433322 45666665543 4799999998776221 133321 112355556667787778
Q ss_pred CC--CCCCCCccccccCChHHHHHHHHhhcCC--CCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCC
Q 018318 91 HL--DPTQWGVNVQPYSGSPANFAAYTAVLEP--HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTG 166 (358)
Q Consensus 91 g~--~~~~~~~~v~~~sGt~a~~~~l~a~~~~--gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 166 (358)
|+ +++ ..+++++|++|+..++.+++++ ||+|++..+.|.++.. .+...|..+. +++.+. ++
T Consensus 77 g~~~~~~---~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g~~~~--~~~~~~-~~ 141 (376)
T 3ezs_A 77 KIELKEN---ELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEG---------AAKFIKAKSL--LMPLTK-EN 141 (376)
T ss_dssp SCCCCGG---GEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHH---------HHHHTTCEEE--EEECCG-GG
T ss_pred CCCCCHH---HEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHH---------HHHHcCCEEE--EcccCC-CC
Confidence 87 433 2355556678999999999999 9999999998876431 2334565444 444332 22
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---------
Q 018318 167 YIDYDKLEEKALDFRPKLIICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF--------- 232 (358)
Q Consensus 167 ~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~--------- 232 (358)
.+++ ++++++.+ ++++|++++++|+ ...+ +++|.++|++||+++|+|++|+. +...+. ..++
T Consensus 142 ~~~~-~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~-~~~~~~-~~~~~~~~~~~~~ 217 (376)
T 3ezs_A 142 DFTP-SLNEKELQ-EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSE-IYENTP-PPSLLEACMLAGN 217 (376)
T ss_dssp TSCC-CCCHHHHH-HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT-CBSSSC-CCCHHHHHHHTTC
T ss_pred Ccch-hHHhhhcc-CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchh-hccCCC-CCCHHHccccccc
Confidence 3444 66677764 6888888877766 3444 77888889999999999999764 332221 1111
Q ss_pred -C-cccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhcc
Q 018318 233 -E-YCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAST 308 (358)
Q Consensus 233 -~-~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~ 308 (358)
. +.++++.|+||+++ |.+.|++++++ ++.+.+....... ..+.+....+++..+++. .
T Consensus 218 ~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~---------------~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~--~ 279 (376)
T 3ezs_A 218 EAFKNVLVIHSLSKRSSAPGLRSGFIAGDS---------------RLLEKYKAFRAYL-GYTSANAIQKASEAAWLD--D 279 (376)
T ss_dssp TTCTTEEEEEESTTTTTCGGGCCEEEEECH---------------HHHHHHHHHHTTT-CCCCCHHHHHHHHHHHHC--S
T ss_pred cccCcEEEEecchhccCCccceeEEEeeCH---------------HHHHHHHHHHhhh-cCCCChHHHHHHHHHHhC--c
Confidence 1 45689999999973 55669988866 4555555432221 123344444444455543 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 309 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 309 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
..++...+++.++++++.+.|+ |+. .+..++.+|+++.
T Consensus 280 ~~~~~~~~~~~~~~~~l~~~l~--~~~---~~~~~~~~~~~~~ 317 (376)
T 3ezs_A 280 RHAEFFRNIYANNLKLARKIFK--NTL---IYPYSFYVYLPVQ 317 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST--TCC---CCSBSSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCC---CCCcceEEEEECC
Confidence 3457778888999999999998 665 2456777888864
No 137
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.84 E-value=2.2e-20 Score=174.38 Aligned_cols=273 Identities=12% Similarity=0.025 Sum_probs=167.2
Q ss_pred ceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHH
Q 018318 33 GIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFA 112 (358)
Q Consensus 33 ~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~ 112 (358)
.--+..+.++..+++++++...+.. ..+...|...+...+++ +++++++|.+. .+++++|++|+..
T Consensus 12 ~~~l~~~~~p~~~~~~~~~~~~~~~-----~~~~~~y~~~~~~~~l~----~~la~~~~~~~-----~i~~~~G~~a~~~ 77 (357)
T 3lws_A 12 TTGQISGHGKRNVGVLKTAFAAVAD-----EMASDQYGTGAIIEPFE----QKFADVLGMDD-----AVFFPSGTMAQQV 77 (357)
T ss_dssp CSEESSBSSCCBHHHHHHHHTTSCT-----TCBCEETTEETTHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHH
T ss_pred hcccccCCCCCCHHHHHHHHHHhhc-----ccCcccccCChHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHH
Confidence 3345566777777777766543211 11112233335556666 78999999865 3667889999999
Q ss_pred HHHhhcCCCC--eEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCC
Q 018318 113 AYTAVLEPHD--RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGS 190 (358)
Q Consensus 113 ~l~a~~~~gd--~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~ 190 (358)
++.+++.+|| .|++.++.|...+... ......|. .+++++. +++.+|+++++++. ++++|+++++
T Consensus 78 al~~~~~~gd~~~vi~~~~~~~~~~~~~------~~~~~~g~--~~~~v~~--~~~~~d~~~l~~~~---~~~~v~~~~p 144 (357)
T 3lws_A 78 ALRIWSDETDNRTVAYHPLCHLEIHEQD------GLKELHPI--ETILVGA--ADRLMTLDEIKALP---DIACLLLELP 144 (357)
T ss_dssp HHHHHHHHHTCCEEEECTTCHHHHSSTT------HHHHHSSC--EEEECSC--TTSCCCHHHHHTCC---SCSEEEEESS
T ss_pred HHHHHhhcCCCcEEEecccceeeeeccc------hhhhccCc--EEEEecC--CCCCcCHHHHhcCc---CcceEEEEcc
Confidence 9999988888 5665554433222100 01122344 4455543 35789999998873 3888988887
Q ss_pred CC---CCcc---chHHHHHHHHHhCCEEEEechhhhhhhhc-cccCCCC-CcccEEEecCCccCCCCCeeEEEEeCCCCC
Q 018318 191 AY---PRDW---DYARFRAVADKCGALLLCDMAHISGLVAA-QEAANPF-EYCHIVTTTTHKSLRGPRAGMIFYRKGPKP 262 (358)
Q Consensus 191 ~~---~~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~-~~~~~~~-~~~d~~~~s~~K~l~g~~gG~i~~~~~~~~ 262 (358)
+| |... ++++|.++|++||+++|+|++|+.+.... +.....+ ..+|++++|+||+++||.||+++.++
T Consensus 145 ~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~---- 220 (357)
T 3lws_A 145 QREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPA---- 220 (357)
T ss_dssp BGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSCEEEEECH----
T ss_pred cccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCceEEEEcCH----
Confidence 75 3333 58999999999999999999986332211 1100011 25788999999999889889888876
Q ss_pred CCCCCCCCccccHHHHhhhhcCCCCcCCCChhHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-CceeeeCC
Q 018318 263 PKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQI-GALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGG 340 (358)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~ 340 (358)
++.+.+.........+....... ++..++++. +.+..++..++++++.+.|++. |+++...+
T Consensus 221 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 284 (357)
T 3lws_A 221 -----------AFCQTARIWKRRYGGDLISLYPYIVSADYYYEL-----RKDRMGQYYEQAKQLAEQFNALPGVHTTPEV 284 (357)
T ss_dssp -----------HHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHTSTTEEEESSS
T ss_pred -----------HHHHHHHHHHHHhcCCcccchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCCeeccCC
Confidence 34444432211110011111111 111233332 2233445677889999999997 89885435
Q ss_pred CcceEEEEEcCC
Q 018318 341 TENHLVLWDLRP 352 (358)
Q Consensus 341 ~~~~~~~v~~~~ 352 (358)
..++.+|+++..
T Consensus 285 ~~~~~~~~~~~~ 296 (357)
T 3lws_A 285 PVSNMFHLHFDG 296 (357)
T ss_dssp CSSSEEEEEEES
T ss_pred CcceEEEEEecC
Confidence 677889998754
No 138
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.84 E-value=6.6e-20 Score=170.77 Aligned_cols=272 Identities=14% Similarity=0.106 Sum_probs=171.5
Q ss_pred ceeEecc-CCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHH
Q 018318 33 GIELIAS-ENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (358)
Q Consensus 33 ~~~l~a~-~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~ 111 (358)
.+.|..+ ...+++.|.+++.+.+.. |..+ .+..+ +.+.+++++++++|+++++ .+++++|++|+.
T Consensus 15 ~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~------~g~~~----~~~~~~~~l~~~~g~~~~~---v~~~~g~t~a~~ 80 (359)
T 1svv_A 15 PYSFVNDYSVGMHPKILDLMARDNMT-QHAG------YGQDS----HCAKAARLIGELLERPDAD---VHFISGGTQTNL 80 (359)
T ss_dssp CEECSCSCSSCCCHHHHHHHHHHTTC-CCCS------TTCSH----HHHHHHHHHHHHHTCTTSE---EEEESCHHHHHH
T ss_pred eEEecCCCcCCCCHHHHHHHHHHHhh-cccc------ccccH----HHHHHHHHHHHHhCCCCcc---EEEeCCchHHHH
Confidence 3444433 335689999999887742 2211 11123 3345568999999987642 345566788999
Q ss_pred HHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhc------CCcEE
Q 018318 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF------RPKLI 185 (358)
Q Consensus 112 ~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~------~~~~v 185 (358)
.++.+++++||+|++..+.|.++.... .+...|..+ +.++.+ ++.+|++++++++++. ++++|
T Consensus 81 ~~~~~~~~~gd~vl~~~~~~~~~~~~~-------~~~~~g~~~--~~v~~~--~~~~d~~~l~~~l~~~~~~~~~~~~~v 149 (359)
T 1svv_A 81 IACSLALRPWEAVIATQLGHISTHETG-------AIEATGHKV--VTAPCP--DGKLRVADIESALHENRSEHMVIPKLV 149 (359)
T ss_dssp HHHHHHCCTTEEEEEETTSHHHHSSTT-------HHHHTTCCE--EEECCT--TSCCCHHHHHHHHHHSCSTTSCEEEEE
T ss_pred HHHHHHhCCCCEEEEcccchHHHHHHH-------HHhcCCCee--EEEeCC--CCeecHHHHHHHHHHHHhccCCCceEE
Confidence 999999999999999998877653210 123456543 444443 5789999999999864 27888
Q ss_pred EEcCCC-CCCccc---hHHHHHHHHHhCCEEEEechh---hhhhhhccccCCCC---CcccEEEecCCccCCCCCe-eEE
Q 018318 186 ICGGSA-YPRDWD---YARFRAVADKCGALLLCDMAH---ISGLVAAQEAANPF---EYCHIVTTTTHKSLRGPRA-GMI 254 (358)
Q Consensus 186 ~~~~~~-~~~~~~---l~~i~~la~~~g~~lvvD~a~---~~g~~~~~~~~~~~---~~~d~~~~s~~K~l~g~~g-G~i 254 (358)
++++++ +|...| +++|.++|++||+++|+|++| +.|... .....+ ..+|++++|++|+ ++|.| |++
T Consensus 150 ~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~--~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l 226 (359)
T 1svv_A 150 YISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPV--NDLTLADIARLTDMFYIGATKA-GGMFGEALI 226 (359)
T ss_dssp EEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTT--CCCCHHHHHHHCSEEEEECTTT-TCSSCEEEE
T ss_pred EEEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCC--cchhhhhhhhcCCEEEEecccC-CCCCceEEE
Confidence 877663 345556 889999999999999999998 323221 000111 1578999999997 56766 888
Q ss_pred EEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 018318 255 FYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGY 334 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~ 334 (358)
+++++..+ .+....... .... +......+++.. .+...++++..+++.++++++.+.|+..|+
T Consensus 227 ~~~~~~~~-----------~~~~~~~~~--~~~~-~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 289 (359)
T 1svv_A 227 ILNDALKP-----------NARHLIKQR--GALM-AKGWLLGIQFEV---LMKDNLFFELGAHSNKMAAILKAGLEACGI 289 (359)
T ss_dssp ECSGGGCT-----------THHHHHHHT--TCCC-TTTHHHHHHHHH---HTSTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEcccHHH-----------HHHHHHhcC--Cccc-ccchhhHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHHhccCCe
Confidence 88764210 122111111 1111 111122222221 233334677888899999999999955688
Q ss_pred eeeeCCCcceEEEEEc
Q 018318 335 SLVTGGTENHLVLWDL 350 (358)
Q Consensus 335 ~~~~~~~~~~~~~v~~ 350 (358)
++.. +..++.+|+++
T Consensus 290 ~~~~-~~~~~~~~~~~ 304 (359)
T 1svv_A 290 RLAW-PSASNQLFPIL 304 (359)
T ss_dssp CBSS-CCSSSEECBEE
T ss_pred EEcc-CCccceEEEEc
Confidence 8764 34566677654
No 139
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.84 E-value=7.5e-20 Score=176.27 Aligned_cols=284 Identities=16% Similarity=0.113 Sum_probs=168.0
Q ss_pred cceeEeccCC--CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhc----CCCCCCCCccccccC
Q 018318 32 RGIELIASEN--FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF----HLDPTQWGVNVQPYS 105 (358)
Q Consensus 32 ~~~~l~a~~~--~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~----g~~~~~~~~~v~~~s 105 (358)
+.+.|..+.. ..+|.|.+++.+.+..... . .+...|...+...+++ +.+++++ +++++ .|++++
T Consensus 70 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~-~-~~~~~y~~~~g~~~lr----~~ia~~~~~g~~~~~~----~i~~t~ 139 (449)
T 3qgu_A 70 KIISLGIGDTTEPLPKYIADAMAKAAAGLAT-R-EGYSGYGAEQGQGALR----EAVASTFYGHAGRAAD----EIFISD 139 (449)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHHHGGGG-S-CCCCCSTTTTCCHHHH----HHHHHHHHTTTTCCGG----GEEEES
T ss_pred CEEEeeCCCCCCCCCHHHHHHHHHHHHhhcc-c-cCCCCCCCCCCcHHHH----HHHHHHHHcCCCCCHH----HEEEcc
Confidence 4577766544 3589999999887753210 0 0001111112334565 4455554 44443 355666
Q ss_pred Ch-HHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccce--------eEEeecccCCC-CCCCCHHHHHH
Q 018318 106 GS-PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIY--------FESLPYKVNSS-TGYIDYDKLEE 175 (358)
Q Consensus 106 Gt-~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~-~~~id~~~l~~ 175 (358)
|+ +++..+ .+++++||+|++..|.|.++.. .+...|.. ..++.++++.+ +...|++++
T Consensus 140 G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~---------~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 207 (449)
T 3qgu_A 140 GSKCDIARI-QMMFGSKPTVAVQDPSYPVYVD---------TSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-- 207 (449)
T ss_dssp CHHHHHHHH-HHHHCSSSCEEEEESCCTHHHH---------HHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC--
T ss_pred CHHHHHHHH-HHHhCCCCEEEEcCCCChhHHH---------HHHHcCCcccccccccceeEEEecccccCCcCChhHc--
Confidence 65 577766 8889999999999999876542 12334443 00333333322 334554331
Q ss_pred HHhhcCCcEEEEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C---cccEEEecCCc
Q 018318 176 KALDFRPKLIICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E---YCHIVTTTTHK 244 (358)
Q Consensus 176 ~l~~~~~~~v~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~---~~d~~~~s~~K 244 (358)
.++++|+++.++|| ... ++++|.++|++||+++|+|++|+. +...+..+.++ . +.++++.|++|
T Consensus 208 ----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 282 (449)
T 3qgu_A 208 ----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYAL-YISNPDCPKTIYEIPGADEVAIETCSFSK 282 (449)
T ss_dssp ----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGG-GCCCTTSCSSGGGSTTGGGTEEEEEECSG
T ss_pred ----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHh-hhcCCCCCCCHhhccCCCCcEEEEecchh
Confidence 36889888877776 333 488999999999999999999864 33332211122 1 45689999999
Q ss_pred cCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 018318 245 SLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANA 322 (358)
Q Consensus 245 ~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~ 322 (358)
+++ |.+.|+++++++..+.. .. .+...+....... ..+++....++..+++........+...+++.+++
T Consensus 283 ~~g~~G~r~G~~~~~~~~~~~~----~~---~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 354 (449)
T 3qgu_A 283 YAGFTGVRLGWTVVPKALKYAN----GE---PVHADWNRVMTTC-FNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENA 354 (449)
T ss_dssp GGTCTTCCCEEEECCTTCBCTT----SC---BHHHHHHHHHHHS-CCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred hcCCccceeEEEecCHHHHhhh----hh---hHHHHHHHHhhcc-cCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 974 66779999988632100 00 1111222111111 12234344443334443211123567788899999
Q ss_pred HHHHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 323 VALGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 323 ~~l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
+++++.|++.|+++.. +..++.+|+++.
T Consensus 355 ~~l~~~L~~~g~~~~~-~~~~~~~~~~~~ 382 (449)
T 3qgu_A 355 QILKTTFTEMGFSVYG-GDDAPYIWVGFP 382 (449)
T ss_dssp HHHHHHHHHTTCCEEE-SSSSSEEEEECT
T ss_pred HHHHHHHHHCCCeeeC-CCCeeEEEEECC
Confidence 9999999999998876 456788999875
No 140
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.84 E-value=1.1e-19 Score=175.25 Aligned_cols=300 Identities=11% Similarity=-0.016 Sum_probs=180.6
Q ss_pred ccccccchHHHHHHHHHHHHhhcceeEeccCC----CCCHHHHHHHhcccccCC--CCCCCCCCCCCCchhHHHHHHHHH
Q 018318 10 SSLETVDPEIHDLIEKEKRRQCRGIELIASEN----FTSFAVIEALGSALTNKY--SEGMPGNRYYGGNEFIDEIENLCR 83 (358)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~----~~~~~V~~a~~~~~~~~~--~~g~~~~~~~~~~~~~~~le~~~~ 83 (358)
.+.+...++.++.+.+.. ..++.+.|..+.. ++++.+.+++.+.+.... ..+|... +...++++.+.
T Consensus 56 ~~~~~~~~s~~~~~~~~~-~~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~------~g~~~lr~~ia 128 (448)
T 3aow_A 56 KKALEMRASEVRELLKLV-ETSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTT------KGFTPLRETLM 128 (448)
T ss_dssp HHHHHCCCCHHHHHHHHH-HTSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCT------TCCHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHhc-cCCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCC------CCcHHHHHHHH
Confidence 334444455444443322 2345566654422 246788888877664310 0123221 12335654444
Q ss_pred HHHHHhcCC-CCCCCCccccccC-ChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeeccc
Q 018318 84 SRALQTFHL-DPTQWGVNVQPYS-GSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKV 161 (358)
Q Consensus 84 ~~la~~~g~-~~~~~~~~v~~~s-Gt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 161 (358)
+++.+.+|+ +++ .|++++ |++|+..++.++++|||+|++..|.|.++.. .+...|.. ++.++.
T Consensus 129 ~~~~~~~g~~~~~----~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~---------~~~~~g~~--~~~v~~ 193 (448)
T 3aow_A 129 KWLGKRYGISQDN----DIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQ---------AFNFYEPQ--YIQIPL 193 (448)
T ss_dssp HHHHHHHCCCTTS----EEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH---------HHHTTCCE--EEEEEE
T ss_pred HHHHHhcCcCChh----hEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHH---------HHHHcCCE--EEEecc
Confidence 555555598 332 244455 5679999999999999999999998876431 23345654 444444
Q ss_pred CCCCCCCCHHHHHHHHh----h-cCCcEEE-EcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCC
Q 018318 162 NSSTGYIDYDKLEEKAL----D-FRPKLII-CGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAAN 230 (358)
Q Consensus 162 ~~~~~~id~~~l~~~l~----~-~~~~~v~-~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~ 230 (358)
+. + .+|+++++++++ + .++++|+ +++++|| ...+ +++|.++|++||+++|+|++|+.+ .+.+....
T Consensus 194 ~~-~-g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~-~~~g~~~~ 270 (448)
T 3aow_A 194 DD-E-GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGEL-RYSGNPEK 270 (448)
T ss_dssp ET-T-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTC-BCSSCCCC
T ss_pred CC-C-CCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccc-cCCCCCCc
Confidence 42 3 499999999997 3 2678874 5666665 3343 679999999999999999997643 32222111
Q ss_pred CC---C--cccEEEecCCccCC-CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHH
Q 018318 231 PF---E--YCHIVTTTTHKSLR-GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALK 304 (358)
Q Consensus 231 ~~---~--~~d~~~~s~~K~l~-g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~ 304 (358)
++ + +.++.+.|++|+++ |.+.|++++++ ++.+.+......... +++....+++..+++
T Consensus 271 ~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~~---------------~l~~~l~~~~~~~~~-~~~~~~q~a~~~~L~ 334 (448)
T 3aow_A 271 KIKALDNEGRVIYLGTFSKILAPGFRIGWMVGDP---------------GIIRKMEIAKQSTDL-CTNVFGQVVAWRYVD 334 (448)
T ss_dssp CTGGGCTTSCEEEEEESTTTTCGGGCCEEEEECH---------------HHHHHHHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred CHHhcCCCCCEEEEccchhhccccccEEEEEeCH---------------HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 22 1 45688999999985 34569999986 455544432211111 223333334344443
Q ss_pred Hh-ccHHHHHHHHHHHHHHHHHHHHHhhC---CceeeeCCCcceEEEEEcC
Q 018318 305 QA-STPAFKAYAKQVKANAVALGNYLTGK---GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 305 ~~-~~~~~~~~~~~~~~~~~~l~~~L~~~---G~~~~~~~~~~~~~~v~~~ 351 (358)
.. ....++...+++.++++++.+.|++. |+++.. +..+..+|+++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~-p~~g~~~~v~~~ 384 (448)
T 3aow_A 335 GGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTK-PEGGMFIWVTLP 384 (448)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECC-CSBSSEEEEECS
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeC-CCccEEEEEEcC
Confidence 21 01224566677778899999999875 788754 456778899874
No 141
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.84 E-value=3.8e-20 Score=177.18 Aligned_cols=279 Identities=16% Similarity=0.083 Sum_probs=174.8
Q ss_pred cceeEeccC-C---CCCHHHHHHHhcccccCC--CCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCC---CCCCCCcccc
Q 018318 32 RGIELIASE-N---FTSFAVIEALGSALTNKY--SEGMPGNRYYGGNEFIDEIENLCRSRALQTFHL---DPTQWGVNVQ 102 (358)
Q Consensus 32 ~~~~l~a~~-~---~~~~~V~~a~~~~~~~~~--~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~---~~~~~~~~v~ 102 (358)
+.+.+..+. + ..++.+.+++.+.+.... ..+|+.. ....++++.+.+++.+.+|. +++ .|+
T Consensus 44 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~----~v~ 113 (425)
T 1vp4_A 44 DAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTT------EGDPVLKQQILKLLERMYGITGLDED----NLI 113 (425)
T ss_dssp TCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCT------TCCHHHHHHHHHHHHHHHCCCSCCGG----GEE
T ss_pred CceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCC------CCCHHHHHHHHHHHHhccCCCCCCcc----cEE
Confidence 456665443 2 246789998887764310 0123221 12345665555556555584 443 244
Q ss_pred ccC-ChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhh--
Q 018318 103 PYS-GSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD-- 179 (358)
Q Consensus 103 ~~s-Gt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~-- 179 (358)
+++ |++|+..++.+++++||+|++..|.|.++.. .+...|..+. .++.++ + .+|++++++++++
T Consensus 114 ~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~---------~~~~~g~~~~--~v~~~~-~-~~d~~~l~~~l~~~~ 180 (425)
T 1vp4_A 114 FTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAIN---------AFRQYLANFV--VVPLED-D-GMDLNVLERKLSEFD 180 (425)
T ss_dssp EEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH---------HHHTTTCEEE--EEEEET-T-EECHHHHHHHHHHHH
T ss_pred EeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH---------HHHHcCCEEE--EeccCC-C-CCCHHHHHHHHHhhh
Confidence 555 4679999999999999999999998865431 2334565444 444442 3 3999999999975
Q ss_pred -----cCCcEE-EEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C--cccEEEecCC
Q 018318 180 -----FRPKLI-ICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E--YCHIVTTTTH 243 (358)
Q Consensus 180 -----~~~~~v-~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~--~~d~~~~s~~ 243 (358)
.++++| ++++++|| ... ++++|.++|++||+++|+|++|+.. .+.+....++ + +.+++++|++
T Consensus 181 ~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~-~~~g~~~~~~~~~~~~~~~i~~~s~s 259 (425)
T 1vp4_A 181 KNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGAL-RYEGETVDPIFKIGGPERVVLLNTFS 259 (425)
T ss_dssp HTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTC-BCSSCCCCCHHHHHCTTTEEEEEEST
T ss_pred hcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccc-cCCCCCCcCHHHhCCCCCEEEEeccc
Confidence 267887 46766665 344 4678999999999999999998643 2222111122 1 3568899999
Q ss_pred ccCC-CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhc-cHHHHHHHHHHHHH
Q 018318 244 KSLR-GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAS-TPAFKAYAKQVKAN 321 (358)
Q Consensus 244 K~l~-g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~ 321 (358)
|+++ |.+.|++++++ ++.+.+......... +.+....+++..+++... ...++...+++.++
T Consensus 260 K~~~~G~r~G~~~~~~---------------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 323 (425)
T 1vp4_A 260 KVLAPGLRIGMVAGSK---------------EFIRKIVQAKQSADL-CSPAITHRLAARYLERYDLLEQLKPTIELYRRK 323 (425)
T ss_dssp TTTCGGGCEEEEECCH---------------HHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHH
T ss_pred cccccccceEEEeeCH---------------HHHHHHHHHhhhhcC-CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9986 44569999876 455544432111111 224344444455555421 12246667778889
Q ss_pred HHHHHHHHhhC-----CceeeeCCCcceEEEEEcC
Q 018318 322 AVALGNYLTGK-----GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 322 ~~~l~~~L~~~-----G~~~~~~~~~~~~~~v~~~ 351 (358)
++++.+.|++. |+++.. +..++.+|+++.
T Consensus 324 ~~~l~~~L~~~~~~~~g~~~~~-~~~g~~~~~~~~ 357 (425)
T 1vp4_A 324 RTVMLNALEEYFSDIPGVKWVK-SEGGLFIWLTLP 357 (425)
T ss_dssp HHHHHHHHHHHSTTSTTCEECC-CSBSSEEEEECC
T ss_pred HHHHHHHHHHhCCCCCceEEec-CCccEEEEEEcC
Confidence 99999999875 788764 456778999875
No 142
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.83 E-value=2.2e-19 Score=172.16 Aligned_cols=288 Identities=13% Similarity=0.059 Sum_probs=167.6
Q ss_pred cceeEeccCC--CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChH-
Q 018318 32 RGIELIASEN--FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP- 108 (358)
Q Consensus 32 ~~~~l~a~~~--~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~- 108 (358)
+.+.|..++. ..||.|++++.+.+... +.+..... |.......++++.+.+++.+.++++++ .|++++|+.
T Consensus 57 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~~-y~~~~g~~~l~~~ia~~~~~~~~~~~~----~i~~t~G~~~ 130 (432)
T 3ei9_A 57 QVISLGIGDTTEPIPEVITSAMAKKAHEL-STIEGYSG-YGAEQGAKPLRAAIAKTFYGGLGIGDD----DVFVSDGAKC 130 (432)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHHHHHT-TSTTTCCC-CCCTTCCHHHHHHHHHHHHTTTTCCGG----GEEEESCHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhcc-cccCCccC-CCCCCCCHHHHHHHHHHHHccCCCCcc----eEEECCChHH
Confidence 4566665543 35899999998876531 11111111 111223346665555555544566653 356677764
Q ss_pred HHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccce----------eEEeecccCCC-CCCCCHHHHHHHH
Q 018318 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIY----------FESLPYKVNSS-TGYIDYDKLEEKA 177 (358)
Q Consensus 109 a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~-~~~id~~~l~~~l 177 (358)
++.. +.++++|||+|++..|.|.++... +...|.. ..+++++++.+ +...|+++
T Consensus 131 al~~-l~~l~~~gd~Vl~~~p~y~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 195 (432)
T 3ei9_A 131 DISR-LQVMFGSNVTIAVQDPSYPAYVDS---------SVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST----- 195 (432)
T ss_dssp HHHH-HHHHHCTTCCEEEEESCCTHHHHH---------HHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----
T ss_pred HHHH-HHHHcCCCCEEEEeCCCCHHHHHH---------HHHcCCcccccccccccCceEEeccCcccCCcCChhh-----
Confidence 6554 677889999999999998875421 1222210 12233333321 23455433
Q ss_pred hhcCCcEEEEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccccCC--CCC---cccEEEecCCccC-
Q 018318 178 LDFRPKLIICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAAN--PFE---YCHIVTTTTHKSL- 246 (358)
Q Consensus 178 ~~~~~~~v~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~--~~~---~~d~~~~s~~K~l- 246 (358)
..++++|++++++|| ... ++++|.++|++||+++|+|++|+.. ...+.... .+. +.++++.|++|++
T Consensus 196 -~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 273 (432)
T 3ei9_A 196 -VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMY-MSDDNPRSIFEIPGAEEVAMETASFSNYAG 273 (432)
T ss_dssp -CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG-CCSSCCSSGGGSTTGGGTEEEEEESHHHHC
T ss_pred -CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhh-ccCCCCCChhhcCCCCCeEEEEecchhccC
Confidence 236888888888776 333 4778888899999999999998743 22221111 111 4568999999987
Q ss_pred -CCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 018318 247 -RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVAL 325 (358)
Q Consensus 247 -~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l 325 (358)
+|.+.|+++++++.... . .. .+.+.+....... .++++....++..+++.......+++..+++.++++++
T Consensus 274 ~~G~r~G~~~~~~~~~~~--~--~~---~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 345 (432)
T 3ei9_A 274 FTGVRLGWTVIPKKLLYS--D--GF---PVAKDFNRIICTC-FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNII 345 (432)
T ss_dssp TTTTCCEEEECCTTCBCT--T--SC---BHHHHHHHHHHHS-CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceEEEEEChHHhhc--c--hH---HHHHHHHHHhccc-cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 56677999998862100 0 00 1233333221111 12234344443333432211123467788899999999
Q ss_pred HHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 326 GNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 326 ~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
.+.|++.|+++.. +..++.+|+++.
T Consensus 346 ~~~L~~~g~~~~~-~~~~~~~~~~~~ 370 (432)
T 3ei9_A 346 IDTFTSLGYDVYG-GKNAPYVWVHFP 370 (432)
T ss_dssp HHHHHHTTCCEEE-CSSSSEEEEECT
T ss_pred HHHHHHCCceecC-CCcceEEEEECC
Confidence 9999999998876 346677999986
No 143
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.83 E-value=4.9e-19 Score=173.08 Aligned_cols=271 Identities=12% Similarity=0.044 Sum_probs=169.6
Q ss_pred CCHHHHHHHhcccccCCC---CCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCC--CCCCCccccccCChHHHHHHHHhh
Q 018318 43 TSFAVIEALGSALTNKYS---EGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD--PTQWGVNVQPYSGSPANFAAYTAV 117 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~---~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~--~~~~~~~v~~~sGt~a~~~~l~a~ 117 (358)
.|+.+++++.+.+....+ .+|+. ......+++.+.+++.+.+|.+ ++ ..+++++|++|+..++.++
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~------~~G~~~lr~~ia~~~~~~~g~~~~~~---~i~~t~G~~~al~~~~~~l 177 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSH------SQGIHGLRDAIASGIASRDGFPANAD---DIFLTDGASPGVHLMMQLL 177 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCC------TTCCHHHHHHHHHHHHHHHSSCCCGG---GEEEESSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCC------CcChHHHHHHHHHHHHhhcCCCCCcc---cEEEcCCHHHHHHHHHHHH
Confidence 455677666655543211 12222 2233456655667777666743 33 2344555678999999999
Q ss_pred c-CCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCC-CCCCCHHHHHHHHhhc-----CCcEEEEcCC
Q 018318 118 L-EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS-TGYIDYDKLEEKALDF-----RPKLIICGGS 190 (358)
Q Consensus 118 ~-~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~l~~~-----~~~~v~~~~~ 190 (358)
+ ++||+|++..|.|.++.. .+...|..+ ++++++++ ++.+|++++++++++. ++++|+++++
T Consensus 178 ~~~~gd~Vlv~~p~y~~~~~---------~~~~~g~~~--~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p 246 (500)
T 3tcm_A 178 IRNEKDGILVPIPQYPLYSA---------SIALHGGAL--VPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINP 246 (500)
T ss_dssp CCSTTEEEEEEESCCTHHHH---------HHHHTTCEE--EEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESS
T ss_pred cCCCCCEEEEeCCCcHhHHH---------HHHHcCCEE--EEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECC
Confidence 7 899999999998876541 234566544 44444433 4689999999999763 5788887777
Q ss_pred CCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC----------C-cc-cEEEecCCccC---CCCC
Q 018318 191 AYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF----------E-YC-HIVTTTTHKSL---RGPR 250 (358)
Q Consensus 191 ~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~----------~-~~-d~~~~s~~K~l---~g~~ 250 (358)
+|| ... ++++|.++|++||+++++|++|.......+....++ . .. .+++.|+||+| +|.+
T Consensus 247 ~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R 326 (500)
T 3tcm_A 247 GNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKR 326 (500)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGC
T ss_pred CCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccc
Confidence 776 333 477888889999999999999764322111111111 1 12 26678999988 3778
Q ss_pred eeEEEEe--CCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHH----------HhccHHHHHHHHHH
Q 018318 251 AGMIFYR--KGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALK----------QASTPAFKAYAKQV 318 (358)
Q Consensus 251 gG~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~----------~~~~~~~~~~~~~~ 318 (358)
+|++++. ++ ++.+.+...... ...++....+++..++. .+. .+...+.+++
T Consensus 327 ~G~~~~~~~~~--------------~~~~~l~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l 389 (500)
T 3tcm_A 327 GGYFEITGFSA--------------PVREQIYKIASV--NLCSNITGQILASLVMNPPKASDESYASYK-AEKDGILASL 389 (500)
T ss_dssp CEEEEEESCCT--------------THHHHHHHHHHT--TCCCCHHHHHHHHHHHSCCCSSSTHHHHHH-HHHHHHHHHH
T ss_pred eEEEEEeCCCH--------------HHHHHHHHHHhc--ccCCCHHHHHHHHHHhcCccccchhHHHHH-HHHHHHHHHH
Confidence 8999883 22 455554432211 12334444444444442 111 2346677888
Q ss_pred HHHHHHHHHHHhhC-CceeeeCCCcceEEEEEcC
Q 018318 319 KANAVALGNYLTGK-GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 319 ~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~v~~~ 351 (358)
.++++++.+.|++. |+++.. +..+..+|+++.
T Consensus 390 ~~~~~~l~~~L~~~~g~~~~~-~~g~~~~~~~~~ 422 (500)
T 3tcm_A 390 ARRAKALEHAFNKLEGITCNE-AEGAMYVFPQIC 422 (500)
T ss_dssp HHHHHHHHHHHHTSTTEECCC-CCBTTEECCEEC
T ss_pred HHHHHHHHHHHhcCCCcEEec-CCeEEEEeeeec
Confidence 99999999999998 998875 456666775543
No 144
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.83 E-value=1.1e-19 Score=172.42 Aligned_cols=214 Identities=19% Similarity=0.210 Sum_probs=147.9
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccc
Q 018318 71 GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT 150 (358)
Q Consensus 71 ~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (358)
+.+...+++ +++++++|.+. .+++++|++|+..++.+++++||+|++..+.|++..... . ......
T Consensus 64 ~~~~~~~l~----~~la~~~g~~~-----~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~--~---~~~~~~ 129 (392)
T 3qhx_A 64 GNPTRTALE----AALAAVEDAAF-----GRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLI--D---KVFTGW 129 (392)
T ss_dssp CCHHHHHHH----HHHHHHTTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHH--H---HTGGGG
T ss_pred CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHH--H---HHHHhc
Confidence 345555565 88999999874 377889999999999999999999999999887643211 0 011234
Q ss_pred cceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhcccc
Q 018318 151 SIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEA 228 (358)
Q Consensus 151 g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~ 228 (358)
|. ++.+++. .|++++++++++ ++++|++++++|+ ...|+++|.++|++||+++|+|++|+.+...
T Consensus 130 g~--~~~~v~~------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~---- 196 (392)
T 3qhx_A 130 NV--EYTPVAL------ADLDAVRAAIRP-TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQ---- 196 (392)
T ss_dssp TC--EEEEECT------TCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC----
T ss_pred Cc--EEEEeCC------CCHHHHHHhhCC-CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccC----
Confidence 54 4444432 289999999975 7899988877665 5789999999999999999999998755321
Q ss_pred CCCCC-cccEEEecCCccCCCC---CeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHH
Q 018318 229 ANPFE-YCHIVTTTTHKSLRGP---RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALK 304 (358)
Q Consensus 229 ~~~~~-~~d~~~~s~~K~l~g~---~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~ 304 (358)
.++. ++|+++.|+||+++++ ++|+++++++ ++.+.+....... ....+.. ..+.+++
T Consensus 197 -~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~--------------~~~~~l~~~~~~~-g~~~~~~---~~~~~~~ 257 (392)
T 3qhx_A 197 -QPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDE--------------ELDQSFAFLQNGA-GAVPGPF---DAYLTMR 257 (392)
T ss_dssp -CGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCH--------------HHHHHHHHHHHHH-CCCCCHH---HHHHHHH
T ss_pred -ChHHhCCcEEEEcCccccCCCCCceEEEEEECcH--------------HHHHHHHHHHHhc-CCCCCHH---HHHHHHh
Confidence 2334 7899999999998754 4899988763 4444443321111 0111211 1122233
Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 018318 305 QASTPAFKAYAKQVKANAVALGNYLTGK 332 (358)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (358)
.+. .+..+.+++.++++++.+.|+++
T Consensus 258 ~l~--~l~~~~~~~~~~~~~l~~~L~~~ 283 (392)
T 3qhx_A 258 GLK--TLVLRMQRHSENAAAVAEFLAEH 283 (392)
T ss_dssp HHT--THHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhh--HHHHHHHHHHHHHHHHHHHHhcC
Confidence 322 24566788899999999999886
No 145
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.83 E-value=1.7e-19 Score=171.70 Aligned_cols=215 Identities=17% Similarity=0.170 Sum_probs=147.5
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccc
Q 018318 71 GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT 150 (358)
Q Consensus 71 ~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (358)
+.+...+++ +++++++|.+. .+++++|++|+..++.++++|||+|+++.+.|+++..... ..+...
T Consensus 60 ~~~~~~~l~----~~ia~~~g~~~-----~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~-----~~~~~~ 125 (404)
T 1e5e_A 60 GNPTVSNLE----GKIAFLEKTEA-----CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFE-----HALTKF 125 (404)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH-----THHHHT
T ss_pred cChHHHHHH----HHHHHHhCCCc-----EEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH-----HHHHHc
Confidence 445555665 78899999863 3678889999999999999999999999998876542110 012345
Q ss_pred cceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHH-hCCEEEEechhhhhhhhccc
Q 018318 151 SIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADK-CGALLLCDMAHISGLVAAQE 227 (358)
Q Consensus 151 g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~-~g~~lvvD~a~~~g~~~~~~ 227 (358)
|+. ++.++.+ |++++++++++ ++++|++++++|+ ...|+++|.++|++ +|+++|+|++|+.+...
T Consensus 126 g~~--~~~v~~~------d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~--- 193 (404)
T 1e5e_A 126 GIQ--VDFINTA------IPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT--- 193 (404)
T ss_dssp TCE--EEEECTT------STTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC---
T ss_pred CCE--EEEECCC------CHHHHHHhcCC-CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhC---
Confidence 653 4444321 78999999875 7899998887766 57799999999999 99999999998765421
Q ss_pred cCCCCC-cccEEEecCCccCCCCC---eeEEEEeCCCCCCCCCCCCCccccHHH-HhhhhcCCCCcCCCChhHHHHHHHH
Q 018318 228 AANPFE-YCHIVTTTTHKSLRGPR---AGMIFYRKGPKPPKKGQPEGAVYDFED-KINFAVFPSLQGGPHNHQIGALAVA 302 (358)
Q Consensus 228 ~~~~~~-~~d~~~~s~~K~l~g~~---gG~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~al~~a 302 (358)
.++. ++|++++|+||+++++. +|+++++++ +.+ .+.........++.+.....+...+
T Consensus 194 --~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~---------------~~~~~l~~~~~~~~g~~~~~~~~~~~~~~ 256 (404)
T 1e5e_A 194 --NPVDFGVDVVVHSATKYINGHTDVVAGLICGKAD---------------LLQQIRMVGIKDITGSVISPHDAWLITRG 256 (404)
T ss_dssp --CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHH---------------HHHHHHHTCCCCCCCCCCCHHHHHHHHHH
T ss_pred --CccccCCEEEEEcCccccCCCCCCeEEEEEECHH---------------HHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 2334 78999999999987653 599988874 333 5544322210122222222222222
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhhCC
Q 018318 303 LKQASTPAFKAYAKQVKANAVALGNYLTGKG 333 (358)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G 333 (358)
++ .+..+.++..++++.+.+.|+++.
T Consensus 257 l~-----~~~~~~~~~~~~~~~l~~~l~~~~ 282 (404)
T 1e5e_A 257 LS-----TLNIRMKAESENAMKVAEYLKSHP 282 (404)
T ss_dssp HT-----THHHHHHHHHHHHHHHHHHHHTCT
T ss_pred Hh-----HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22 234567777888999989888763
No 146
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.83 E-value=7.1e-19 Score=164.73 Aligned_cols=265 Identities=12% Similarity=0.036 Sum_probs=166.4
Q ss_pred cceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccC-ChH
Q 018318 32 RGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYS-GSP 108 (358)
Q Consensus 32 ~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~s-Gt~ 108 (358)
+.+.+..+.+. .++.|.+++.+.+... .+|+. ....+++ +.+++++|++++ .|++++ |++
T Consensus 25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~-------~~~~~l~----~~la~~~~~~~~----~v~~~~g~~~ 87 (364)
T 1lc5_A 25 QLLDFSANINPLGMPVSVKRALIDNLDCI--ERYPD-------ADYFHLH----QALARHHQVPAS----WILAGNGETE 87 (364)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGGG--GSCCC-------TTCHHHH----HHHHHHHTSCGG----GEEEESSHHH
T ss_pred ceEEeccccCCCCCCHHHHHHHHHHHHHh--hcCCC-------CCHHHHH----HHHHHHHCcCHH----HEEECCCHHH
Confidence 45777666543 5899999998876431 12321 1123444 778889998753 244555 467
Q ss_pred HHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCC-HHHHHHHHhhcCCcEEEE
Q 018318 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYID-YDKLEEKALDFRPKLIIC 187 (358)
Q Consensus 109 a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id-~~~l~~~l~~~~~~~v~~ 187 (358)
++..++.++ +||+|++..+.|.++.. .+...|..+. .++.+.+ ..++ ++++.+.+. .++++|++
T Consensus 88 al~~~~~~~--~gd~vl~~~p~y~~~~~---------~~~~~g~~~~--~v~~~~~-~~~~~l~~~~~~~~-~~~~~v~i 152 (364)
T 1lc5_A 88 SIFTVASGL--KPRRAMIVTPGFAEYGR---------ALAQSGCEIR--RWSLREA-DGWQLTDAILEALT-PDLDCLFL 152 (364)
T ss_dssp HHHHHHHHH--CCSEEEEEESCCTHHHH---------HHHHTTCEEE--EEECCGG-GTTCCCTTHHHHCC-TTCCEEEE
T ss_pred HHHHHHHHc--CCCeEEEeCCCcHHHHH---------HHHHcCCeEE--EEeCCcc-cccchhHHHHHhcc-CCCCEEEE
Confidence 999888887 78999999998876431 2234565444 3443321 1233 465555553 36788887
Q ss_pred cCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCCC-CC--cccEEEecCCccCC--CCCeeEEE-E
Q 018318 188 GGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANP-FE--YCHIVTTTTHKSLR--GPRAGMIF-Y 256 (358)
Q Consensus 188 ~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~-~~--~~d~~~~s~~K~l~--g~~gG~i~-~ 256 (358)
++++|+ ...| +++|.++|++||+++|+|++|+.+. ..+.-... ++ +.+++++|+||+++ |.+.|+++ .
T Consensus 153 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 231 (364)
T 1lc5_A 153 CTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFI-PHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNS 231 (364)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGS-TTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECC
T ss_pred eCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhc-cCccchhhHhccCCCEEEEEECchhhcCCccceEEEEEC
Confidence 777765 4555 8999999999999999999986432 21110011 12 56799999999974 55679998 6
Q ss_pred eCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-Cce
Q 018318 257 RKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYS 335 (358)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~ 335 (358)
++ ++.+.+.....++ +.+....+++..+++. ...++...+++.++++++.+.|++. |++
T Consensus 232 ~~---------------~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 291 (364)
T 1lc5_A 232 DD---------------AAMARMRRQQMPW---SVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLT 291 (364)
T ss_dssp CH---------------HHHHHHHHHSCTT---CSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred CH---------------HHHHHHHHhCCCC---CCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 55 4555555433221 2333333333333322 1234677788889999999999987 888
Q ss_pred eeeCCCcceEEEEEcC
Q 018318 336 LVTGGTENHLVLWDLR 351 (358)
Q Consensus 336 ~~~~~~~~~~~~v~~~ 351 (358)
+.. ..+..+|+++.
T Consensus 292 ~~~--~~g~~~~~~~~ 305 (364)
T 1lc5_A 292 VYP--GRANYLLLRCE 305 (364)
T ss_dssp ECC--CSSSEEEEEES
T ss_pred ECC--CCCeEEEEECC
Confidence 764 33445777763
No 147
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.83 E-value=1.9e-19 Score=171.74 Aligned_cols=282 Identities=11% Similarity=0.125 Sum_probs=167.1
Q ss_pred cceeEeccC-------CCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCcccccc
Q 018318 32 RGIELIASE-------NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPY 104 (358)
Q Consensus 32 ~~~~l~a~~-------~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~ 104 (358)
+.+.|..++ ..+++.|.+++.+...... .+|... .| ..++++.+.+++....+.+..+ ..++++
T Consensus 39 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~---~g---~~~lr~~ia~~~~~~~~~~~~~--~i~~t~ 109 (418)
T 3rq1_A 39 NVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEH-VGYAPI---AG---IPDFLCAAEKECFGNFRPEGHI--RSIATA 109 (418)
T ss_dssp GCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHH-HSCCCT---TC---CHHHHHHHHHHHHGGGCCSSEE--EEEEES
T ss_pred CeEECCCCcccCCCCCccccHHHHHHHHHhccccc-CCCCCC---CC---hHHHHHHHHHHHhcccCccccc--cEEECC
Confidence 456666652 3458899988866442111 123221 12 2345444446665555544210 124445
Q ss_pred CChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhc---C
Q 018318 105 SGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF---R 181 (358)
Q Consensus 105 sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~---~ 181 (358)
+|++|+..++.++++|||+|+++.|.|.++.. .+...|..+ +.++.+.+++.+|++++++++++. +
T Consensus 110 g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~---------~~~~~g~~~--~~v~~~~~~~~~d~~~l~~~l~~~~~~~ 178 (418)
T 3rq1_A 110 GGTGGIHHLIHNYTEPGDEVLTADWYWGAYRV---------ICSDTGRTL--VTYSLFDEHNNFNHEAFQNRVNELAAKQ 178 (418)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEESSCCTHHHH---------HHHHTTCEE--EEECSBCTTSSBCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHhcCCCCEEEECCCCchhHHH---------HHHHcCCEE--EEEeeeCCCCCcCHHHHHHHHHHhhccC
Confidence 56789999999999999999999998876531 234466544 444443345789999999999753 5
Q ss_pred Cc-EEEEcCC-CCC--Cccc---hHHHHHHHH------HhCCEEEEechhhhhhhhcccc----CCCCC--ccc---EEE
Q 018318 182 PK-LIICGGS-AYP--RDWD---YARFRAVAD------KCGALLLCDMAHISGLVAAQEA----ANPFE--YCH---IVT 239 (358)
Q Consensus 182 ~~-~v~~~~~-~~~--~~~~---l~~i~~la~------~~g~~lvvD~a~~~g~~~~~~~----~~~~~--~~d---~~~ 239 (358)
++ +++++++ +|| ...+ +++|+++|+ +||+++|+|++|. ++.+.+.. ..... ..+ +++
T Consensus 179 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 257 (418)
T 3rq1_A 179 TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYL-DYSGEKDEVRAFFNKFSHLPKEILTCVC 257 (418)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTG-GGSSCHHHHHGGGGGGTTCCTTEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccc-cccCChHHHHHHHHHHHhcCCCceEEEE
Confidence 66 6777767 665 4455 556666666 8999999999963 44433210 00111 122 778
Q ss_pred ecCCccC--CCCCeeEEEE---eCCCCCCCCCCCCCccccHHHHhhhhcCC---CCcCCCChhHHHHHHHHHHHhc----
Q 018318 240 TTTHKSL--RGPRAGMIFY---RKGPKPPKKGQPEGAVYDFEDKINFAVFP---SLQGGPHNHQIGALAVALKQAS---- 307 (358)
Q Consensus 240 ~s~~K~l--~g~~gG~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~al~~al~~~~---- 307 (358)
+|+||++ +|.+.|++++ ++ ++.+.+...... ...++++.....++..++....
T Consensus 258 ~S~sK~~~~~G~r~G~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 322 (418)
T 3rq1_A 258 YSLSKGFTMYGQRVGAMIGISDDE---------------EIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKE 322 (418)
T ss_dssp EESTTTTTCCSSCCEEEEEEESSH---------------HHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHH
T ss_pred EeCCCCCcCcCCcceEEEEEeCCH---------------HHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHH
Confidence 8999986 4667799988 44 454444332100 0011223333333333332110
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEc
Q 018318 308 -TPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDL 350 (358)
Q Consensus 308 -~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~ 350 (358)
..+.....+++.++++++.+.|++.|+++.. +..+..+|+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~ 365 (418)
T 3rq1_A 323 YEAERNCYYQLIRDRADIFKQEAAQVGLPMLP-YRGGFFITIPT 365 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC-CCSSSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCceEEEEcCC
Confidence 0122345667888889999999988998765 45666778875
No 148
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.83 E-value=3.5e-20 Score=178.70 Aligned_cols=232 Identities=11% Similarity=0.045 Sum_probs=146.3
Q ss_pred HHHHHHHhcCCCCCCCCccccccCC-hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecc
Q 018318 82 CRSRALQTFHLDPTQWGVNVQPYSG-SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK 160 (358)
Q Consensus 82 ~~~~la~~~g~~~~~~~~~v~~~sG-t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 160 (358)
+++++++ +|++. . +++++| ++|+..++.+++++||+|++..+.|.+... .+...|.....++..
T Consensus 62 ~~~~la~-~g~~~----~-v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~---------~~~~~G~~~~~v~~~ 126 (446)
T 2x3l_A 62 SMKQVEK-HSDYD----G-YFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLH---------ALDISQQEGHFIETH 126 (446)
T ss_dssp HHHHHCS-CTTEE----E-EEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHH---------HHHHHTCCEEECEEE
T ss_pred HHHHHHh-cCCCc----e-EEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHH---------HHHHcCCeEEEEeCe
Confidence 3488999 99874 2 445555 579999999999999999999998876541 233456544433332
Q ss_pred cCCCC---CCCCHHHHHHHHhhcCCcEEEEcCCC-CCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC-C-c
Q 018318 161 VNSST---GYIDYDKLEEKALDFRPKLIICGGSA-YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF-E-Y 234 (358)
Q Consensus 161 ~~~~~---~~id~~~l~~~l~~~~~~~v~~~~~~-~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~-~-~ 234 (358)
.+++. +.+|++++ +. .++++|++++++ +|...|+++|.++|++||+++++|++|+..+.+.+. +... . +
T Consensus 127 ~~~~~~~~~~~d~~~l---~~-~~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~g 201 (446)
T 2x3l_A 127 QSPLTNHYNKVNLSRL---NN-DGHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNYQ 201 (446)
T ss_dssp ECTTTSSEEEEEC-----------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGGT
T ss_pred eccccCcCCCCCHHHH---cC-CCceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHcC
Confidence 24211 46788887 33 368888776654 567789999999999999999999998763322222 2222 2 6
Q ss_pred ccEEEecCCccCCCCC-eeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHH
Q 018318 235 CHIVTTTTHKSLRGPR-AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKA 313 (358)
Q Consensus 235 ~d~~~~s~~K~l~g~~-gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~ 313 (358)
+|++++|+||+++|+. +|+++++++.. + ...+.........++++...++++.++++.+...+.+.
T Consensus 202 ~Di~~~S~~K~l~~~~g~g~l~~~~~~i------------~-~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~ 268 (446)
T 2x3l_A 202 ADYVVQSFHKTLPALTMGSVLYIHKNAP------------Y-RENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTL 268 (446)
T ss_dssp CSEEEECHHHHSSSCTTCEEEEEETTCT------------T-HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHH
T ss_pred CCEEEECCccccccccccEEEEEcCCcC------------C-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 8999999999887764 49999988521 2 11222111111234566666777766666553212233
Q ss_pred HHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 314 YAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 314 ~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
+.++..++++++++. |+++......+ .+|+++.
T Consensus 269 ~~~~~~~l~~~l~~~----g~~~~~~~~~~-~l~i~~~ 301 (446)
T 2x3l_A 269 FFAKRAQLIECLENK----GFEMLQVDDPL-KLLIKYE 301 (446)
T ss_dssp HHHHHHHHHHHHHHH----TCEEEECSSTT-EEEEECT
T ss_pred HHHHHHHHHHHHHHc----CCEECcCCCCe-EEEEEeC
Confidence 566667777777665 88887633233 4788764
No 149
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.83 E-value=1.5e-19 Score=171.52 Aligned_cols=243 Identities=16% Similarity=0.155 Sum_probs=156.3
Q ss_pred cCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc
Q 018318 39 SENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL 118 (358)
Q Consensus 39 ~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~ 118 (358)
+++++.+++.+++.... ... .++...++ ..+...+++ +++++++|.+. .+++++|++|+..++.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~--~~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~a~~~~l~~~~ 100 (398)
T 2rfv_A 34 TSTFVFDSAEQGAARFA-LEE-SGYIYTRL--GNPTTDALE----KKLAVLERGEA-----GLATASGISAITTTLLTLC 100 (398)
T ss_dssp CSBCCCSSHHHHHHHC-------CCSBTTT--CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHC
T ss_pred CCccccCCHHHHHHhhc-CCC-CCCceeCC--CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHh
Confidence 44455567776665211 111 12222221 234444554 88999999873 3678889999999999999
Q ss_pred CCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Ccc
Q 018318 119 EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDW 196 (358)
Q Consensus 119 ~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~ 196 (358)
++||+|++..+.|++...... ......|. +++.++. .|++++++++++ ++++|++++++|+ ...
T Consensus 101 ~~gd~vi~~~~~~~~~~~~~~-----~~~~~~g~--~~~~v~~------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~ 166 (398)
T 2rfv_A 101 QQGDHIVSASAIYGCTHAFLS-----HSMPKFGI--NVRFVDA------AKPEEIRAAMRP-ETKVVYIETPANPTLSLV 166 (398)
T ss_dssp CTTCEEEEESSSCHHHHHHHH-----THHHHTTC--EEEEECT------TSHHHHHHHCCT-TEEEEEEESSBTTTTBCC
T ss_pred CCCCEEEEcCCCcccHHHHHH-----HHHHHcCC--EEEEeCC------CCHHHHHHhcCC-CCeEEEEECCCCCCCccc
Confidence 999999999998876542110 00133454 3444432 289999999875 7889988877765 567
Q ss_pred chHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC-cccEEEecCCccCCCCC---eeEEEEeCCCCCCCCCCCCCcc
Q 018318 197 DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTHKSLRGPR---AGMIFYRKGPKPPKKGQPEGAV 272 (358)
Q Consensus 197 ~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~~~s~~K~l~g~~---gG~i~~~~~~~~~~~~~~~~~~ 272 (358)
|+++|.++|++||+++|+|++|+.+... .++. ++|++++|+||++++|. ||+++++++
T Consensus 167 ~l~~i~~l~~~~~~~li~De~~~~~~~~-----~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~------------- 228 (398)
T 2rfv_A 167 DIETVAGIAHQQGALLVVDNTFMSPYCQ-----QPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQE------------- 228 (398)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTCTTTC-----CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHH-------------
T ss_pred CHHHHHHHHHHcCCEEEEECCCcccccC-----CchhhCCcEEEEeCcccccCCCCceEEEEEECHH-------------
Confidence 9999999999999999999998866432 1233 78999999999987654 489888774
Q ss_pred ccHHH-HhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCC
Q 018318 273 YDFED-KINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKG 333 (358)
Q Consensus 273 ~~~~~-~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G 333 (358)
+.+ .+.........++.+....+++..+++ .+..+.++..++++++.+.|++.+
T Consensus 229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~ 283 (398)
T 2rfv_A 229 --FIDQARFVGLKDITGGCMSPFNAWLTLRGVK-----TLGIRMERHCENALKIARFLEGHP 283 (398)
T ss_dssp --HHHHHHHTHHHHTTCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTCT
T ss_pred --HHHHHHHHHHHhCCCCCCCHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 332 333221111012233333333333332 234556777888999999998753
No 150
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.83 E-value=7e-19 Score=169.79 Aligned_cols=259 Identities=16% Similarity=0.154 Sum_probs=162.8
Q ss_pred CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCC
Q 018318 42 FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPH 121 (358)
Q Consensus 42 ~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~g 121 (358)
.+++++++++... .. . +...+...+++ +.+++++|.+. .+++++|++|+..++.++++||
T Consensus 55 ~~~~~~~~a~~~~-~~----~------y~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~~al~~l~~~g 114 (456)
T 2ez2_A 55 AMSDKQWAGMMMG-DE----A------YAGSENFYHLE----RTVQELFGFKH-----IVPTHQGRGAENLLSQLAIKPG 114 (456)
T ss_dssp CCCHHHHHHHTTC-CC----C------SSSCHHHHHHH----HHHHHHHCCSE-----EEEESSHHHHHHHHHHHHCCTT
T ss_pred cCCHHHHHHhhcc-hh----h------cccChhHHHHH----HHHHHHhCCCc-----EEEeCCcHHHHHHHHHHhCCCC
Confidence 4578999887621 11 1 22234455565 77899999764 3667888999999999999999
Q ss_pred CeEEEecCCC-CccccccccccCCcccccccceeEEeecccCC----C-----CCCCCHHHHHHHHhhcC---CcEEEEc
Q 018318 122 DRIMGLDLPS-GGHLTHGYYTSGGKKISATSIYFESLPYKVNS----S-----TGYIDYDKLEEKALDFR---PKLIICG 188 (358)
Q Consensus 122 d~Vl~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~-----~~~id~~~l~~~l~~~~---~~~v~~~ 188 (358)
| +++.+.| ++.. ..+...|..+ +.++++. + ++.+|++++++++++.. +++|+++
T Consensus 115 d--i~~~~~~~~~~~---------~~~~~~G~~~--~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~ 181 (456)
T 2ez2_A 115 Q--YVAGNMYFTTTR---------YHQEKNGAVF--VDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLA 181 (456)
T ss_dssp C--EEEESSCCHHHH---------HHHHHTTCEE--EECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEE
T ss_pred C--EeccccccchhH---------HHHHHcCCEE--EEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEe
Confidence 9 6677766 4321 1234456544 4444331 1 25789999999997632 2778877
Q ss_pred CCCC-C--Cccc---hHHHHHHHHHhCCEEEEechhhhh---------hhhccccCC----CC-CcccEEEecCCccCCC
Q 018318 189 GSAY-P--RDWD---YARFRAVADKCGALLLCDMAHISG---------LVAAQEAAN----PF-EYCHIVTTTTHKSLRG 248 (358)
Q Consensus 189 ~~~~-~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g---------~~~~~~~~~----~~-~~~d~~~~s~~K~l~g 248 (358)
+++| + ...+ +++|.++|++||+++|+|++|+.| +.+.+.... .+ ...|++++|++|+++.
T Consensus 182 ~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~ 261 (456)
T 2ez2_A 182 VTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV 261 (456)
T ss_dssp SSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC
T ss_pred ccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCC
Confidence 6655 3 4444 999999999999999999999875 222221000 01 2468888889997654
Q ss_pred CCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcC--CC--CcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 018318 249 PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVF--PS--LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVA 324 (358)
Q Consensus 249 ~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~ 324 (358)
++||+++++++ ++.+.+..... .+ ..++.+...+.+++.++..... +.+.++..++.++
T Consensus 262 ~~gG~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~---~~~~~~~~~~~~~ 324 (456)
T 2ez2_A 262 NIGGFLCMNDD--------------EMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ---YEYIEHRVKQVRY 324 (456)
T ss_dssp SSCEEEEESCH--------------HHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHH
T ss_pred CceeEEEECCH--------------HHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH---HHHHHHHHHHHHH
Confidence 56899988543 44443332110 01 1112222233332333222111 4566777888899
Q ss_pred HHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 325 LGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 325 l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
+.+.|.+.|+++.. +..++.+|+++.
T Consensus 325 l~~~L~~~g~~~~~-p~~~~~~~~~~~ 350 (456)
T 2ez2_A 325 LGDKLKAAGVPIVE-PVGGHAVFLDAR 350 (456)
T ss_dssp HHHHHHHTTCCBCS-SCCSSEEEEEHH
T ss_pred HHHHHhcCCCcccc-CCCceEEEEEhH
Confidence 99999888887764 456788898874
No 151
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.82 E-value=2.8e-19 Score=171.88 Aligned_cols=187 Identities=20% Similarity=0.221 Sum_probs=134.8
Q ss_pred cCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh-
Q 018318 39 SENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV- 117 (358)
Q Consensus 39 ~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~- 117 (358)
+.+.+++++++++.+.+...+ ++.+ +...+++ +.+++++|++. .+++++|++|+..++.++
T Consensus 37 ~~~~~~~~~~~a~~~~~~~~~--------~~~~-~~~~~l~----~~la~~~g~~~-----~i~~~sGt~a~~~al~~l~ 98 (437)
T 3bb8_A 37 SGKVIGTKELQLMVEASLDGW--------LTTG-RFNDAFE----KKLGEYLGVPY-----VLTTTSGSSANLLALTALT 98 (437)
T ss_dssp CCCCCCHHHHHHHHHHHHHCC--------CBSC-HHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHcCC--------cCCC-hHHHHHH----HHHHHHHCCCc-----EEEeCCHHHHHHHHHHHhh
Confidence 445567889999887764321 1222 3444554 78999999874 377889999999999988
Q ss_pred --------cCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcC
Q 018318 118 --------LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGG 189 (358)
Q Consensus 118 --------~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~ 189 (358)
+++||+|+++.++|.+... .+...|. +++.++++.+++.+|++++++++.+ ++++|++++
T Consensus 99 ~~~~~~~~~~~gd~Vi~~~~~~~~~~~---------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 166 (437)
T 3bb8_A 99 SPKLGVRALKPGDEVITVAAGFPTTVN---------PTIQNGL--IPVFVDVDIPTYNVNASLIEAAVSD-KTKAIMIAH 166 (437)
T ss_dssp CGGGGGGSCCTTCEEEECSSSCHHHHH---------HHHHTTC--EEEECCEETTTTEECGGGHHHHCCT-TEEEEEEEC
T ss_pred hcccccccCCCcCEEEECCCCcHHHHH---------HHHHcCC--EEEEEeccCccCCcCHHHHHHhcCC-CCeEEEEeC
Confidence 7899999999998876542 2334565 4455555534678999999999865 688888764
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC-cccEEEecC--CccCCCCCeeEEEEeCC
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTT--HKSLRGPRAGMIFYRKG 259 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~~~s~--~K~l~g~~gG~i~~~~~ 259 (358)
..+.+.++++|.++|+++|+++|+|++|+.|....+. .+. ..|++++|+ .|.++|++||+++++++
T Consensus 167 -~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~---~~~~~~d~~~~s~~~~k~l~~g~gg~~~~~~~ 235 (437)
T 3bb8_A 167 -TLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTYDGK---MAGTFGDIGTVSFYPAKHITMGEGGAVFTQSA 235 (437)
T ss_dssp -GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECSTTSSSCCSSCEEEEESCH
T ss_pred -CCCChhcHHHHHHHHHHcCCEEEEECccccCceECCe---ecccccCEEEEECcCCcCCCCCCeEEEEeCCH
Confidence 2344579999999999999999999999877654211 122 368877775 34577888999998764
No 152
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.82 E-value=6.1e-19 Score=164.61 Aligned_cols=264 Identities=14% Similarity=0.087 Sum_probs=170.5
Q ss_pred hcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChH
Q 018318 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (358)
Q Consensus 31 ~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~ 108 (358)
++.+.+..+.++ +++.|.+++.+.+.... +|+. +...+++ +++++++++++++ .+++++|++
T Consensus 26 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~--~y~~-------~~~~~l~----~~la~~~~~~~~~---i~~~~g~t~ 89 (361)
T 3ftb_A 26 RELLDYSSNINPLGIPKSFLNNIDEGIKNLG--VYPD-------VNYRRLN----KSIENYLKLKDIG---IVLGNGASE 89 (361)
T ss_dssp --CEETTCCCCTTCSCHHHHTTHHHHHHGGG--SCCC-------TTCHHHH----HHHHHHHTCCSCE---EEEESSHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHHhc--CCCC-------ccHHHHH----HHHHHHhCCCcce---EEEcCCHHH
Confidence 356777766554 47999999887765422 3332 1223444 7889999987642 244455577
Q ss_pred HHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEc
Q 018318 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG 188 (358)
Q Consensus 109 a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~ 188 (358)
|+..++.++ |+|++..+.|.++.. .+...|..+ +.++.+ .++.+|++++++++++ +++|+++
T Consensus 90 al~~~~~~~----d~vi~~~~~~~~~~~---------~~~~~g~~~--~~~~~~-~~~~~~~~~l~~~l~~--~~~v~i~ 151 (361)
T 3ftb_A 90 IIELSISLF----EKILIIVPSYAEYEI---------NAKKHGVSV--VFSYLD-ENMCIDYEDIISKIDD--VDSVIIG 151 (361)
T ss_dssp HHHHHHTTC----SEEEEEESCCTHHHH---------HHHHTTCEE--EEEECC-TTSCCCHHHHHHHTTT--CSEEEEE
T ss_pred HHHHHHHHc----CcEEEecCChHHHHH---------HHHHcCCeE--EEeecC-cccCCCHHHHHHhccC--CCEEEEe
Confidence 999888877 999999998876431 234456544 444444 2457889999999975 8888888
Q ss_pred CCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C--cccEEEecCCccCC--CCCeeEEEE
Q 018318 189 GSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E--YCHIVTTTTHKSLR--GPRAGMIFY 256 (358)
Q Consensus 189 ~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~--~~d~~~~s~~K~l~--g~~gG~i~~ 256 (358)
+++|+ ... ++++|+++|++||+++|+|++|+.. .... ..... . +..++++|++|+++ |.+.|++++
T Consensus 152 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~ 229 (361)
T 3ftb_A 152 NPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEF-TGDP-SSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGIT 229 (361)
T ss_dssp TTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGG-TCCT-TSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhh-cCCc-ccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEe
Confidence 88776 333 4778888999999999999998633 2211 01111 1 33478899999874 456688884
Q ss_pred eCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-Cce
Q 018318 257 RKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYS 335 (358)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~ 335 (358)
.++ ++.+.+.....++ +++....+++.++++. .+.++...++..++++++++.|++. |++
T Consensus 230 ~~~--------------~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 290 (361)
T 3ftb_A 230 NNK--------------EIAAKIKAKQNPW---NINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIK 290 (361)
T ss_dssp SCH--------------HHHHHHHTTSCTT---CSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEE
T ss_pred CCH--------------HHHHHHHhhCCCC---CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 443 5666665433221 3344444444444432 1335777888999999999999988 787
Q ss_pred -eeeCCCcceEEEEEcC
Q 018318 336 -LVTGGTENHLVLWDLR 351 (358)
Q Consensus 336 -~~~~~~~~~~~~v~~~ 351 (358)
+.. ..+..+|+++.
T Consensus 291 ~~~~--~~~~~~~~~~~ 305 (361)
T 3ftb_A 291 RVFS--PHANFVLCRLE 305 (361)
T ss_dssp EEEC--CSSSEEEEEES
T ss_pred eecC--CCCeEEEEEcC
Confidence 654 33445777764
No 153
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.82 E-value=1.3e-19 Score=172.70 Aligned_cols=282 Identities=11% Similarity=0.064 Sum_probs=166.3
Q ss_pred cceeEeccC------C-CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCcccccc
Q 018318 32 RGIELIASE------N-FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPY 104 (358)
Q Consensus 32 ~~~~l~a~~------~-~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~ 104 (358)
+.+.+..+. + .+++.|.+++....... ..+|+.. .| ..++.+.+.+++....+.+..+ ..++++
T Consensus 38 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~Y~~~---~g---~~~lr~~la~~~~~~~~~~~~~--~i~~t~ 108 (413)
T 3t18_A 38 AVINAALGTLLDDKGKIIALPSVYDRLDEMDRSH-IASYAPI---EG---EKDYRKIVIDTLFGPYKPEGYI--SAIATP 108 (413)
T ss_dssp GCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHH-HHSCCCT---TC---CHHHHHHHHHHHHGGGCCSSEE--EEEEES
T ss_pred ceEeccccCccCCCCCcCChHHHHHHHHhcCccc-ccCcCCC---CC---CHHHHHHHHHHHhcccCccccC--cEEEcC
Confidence 456666543 2 35788988876533211 1123221 12 2244444446665555543211 134455
Q ss_pred CChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhc---C
Q 018318 105 SGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF---R 181 (358)
Q Consensus 105 sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~---~ 181 (358)
+|++|+..++.++++|||+|++..|.|.++.. .+...|..+ +.++.+.+++.+|++++++++++. +
T Consensus 109 g~~~al~~~~~~~~~~gd~Vl~~~p~~~~~~~---------~~~~~g~~~--~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 177 (413)
T 3t18_A 109 GGTGAIRSAIFSYLDEGDPLICHDYYWAPYRK---------ICEEFGRNF--KTFEFFTDDFAFNIDVYKEAIDEGIRDS 177 (413)
T ss_dssp HHHHHHHHHHHHHCCSSCEEEEESSCCTHHHH---------HHHHHTCEE--EEECCBCTTSSBCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHhcCCCCEEEECCCCcccHHH---------HHHHhCCeE--EEeeccCCCCCcCHHHHHHHHHHHhhcC
Confidence 56789999999999999999999998876531 234456544 444443235789999999999753 5
Q ss_pred Cc-EEEEcCC-CCC--Cccc---hHHHHHHHH------HhCCEEEEechhhhhhhhccccCCCC-C---c--cc---EEE
Q 018318 182 PK-LIICGGS-AYP--RDWD---YARFRAVAD------KCGALLLCDMAHISGLVAAQEAANPF-E---Y--CH---IVT 239 (358)
Q Consensus 182 ~~-~v~~~~~-~~~--~~~~---l~~i~~la~------~~g~~lvvD~a~~~g~~~~~~~~~~~-~---~--~d---~~~ 239 (358)
++ +++++++ +|| ...+ +++|+++|+ +||+++|+|++| .++.+.+....++ . + .+ +++
T Consensus 178 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 256 (413)
T 3t18_A 178 DRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAY-LEFAGDGDQQRKFFEKFSNLPRNLFVVVA 256 (413)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTT-GGGSSSSSTTTGGGGGGTTCCTTEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEeccc-ccccCChhhHHHHHHHHhhcCCCeeEEEE
Confidence 67 6777776 665 4555 455666666 899999999996 3554433211111 1 1 12 778
Q ss_pred ecCCccCC--CCCeeEEEE---eCCCCCCCCCCCCCccccHHHHhhhhcCCC---CcCCCChhHHHHHHHHHHHhc----
Q 018318 240 TTTHKSLR--GPRAGMIFY---RKGPKPPKKGQPEGAVYDFEDKINFAVFPS---LQGGPHNHQIGALAVALKQAS---- 307 (358)
Q Consensus 240 ~s~~K~l~--g~~gG~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~al~~al~~~~---- 307 (358)
+|+||+++ |.+.|++++ ++ ++.+.+....... ..++++....+++..++....
T Consensus 257 ~S~sK~~~~~G~riG~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 321 (413)
T 3t18_A 257 FSMSKSHTAYGLRSGAAVGISSSK---------------EIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIY 321 (413)
T ss_dssp EEHHHHTTCGGGCCEEEEEEESCH---------------HHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHH
T ss_pred EecCccCCCcCcCcEEEEEecCCH---------------HHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHH
Confidence 89999874 456699988 44 4544443321100 011223333333332222110
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEc
Q 018318 308 TPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDL 350 (358)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~ 350 (358)
.+..+...+++.++++++.+.|++.|+++.. +..+..+|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~~~~~~~~ 363 (413)
T 3t18_A 322 EQELVDLRNMLKSRADVFVTAAKENKLTMIP-YFGGFFTFIPT 363 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBC-CCSSSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccC-CCceEEEEeCC
Confidence 0123455677888899999999999998875 45666788875
No 154
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.82 E-value=3.3e-20 Score=173.19 Aligned_cols=284 Identities=13% Similarity=0.073 Sum_probs=170.7
Q ss_pred cceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCC---chhHHHHHHHHHHHHHHhcCCCCCCCCccccccC-C-
Q 018318 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGG---NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYS-G- 106 (358)
Q Consensus 32 ~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~---~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~s-G- 106 (358)
+.+.+.+++..+|+.|++++.+.+.... +++...+.. ......+.+.+++++++++|++.++ .+++++ +
T Consensus 3 ~~~~~~~g~~~~p~~v~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~---~v~~~~g~g 76 (360)
T 1w23_A 3 QVFNFNAGPSALPKPALERAQKELLNFN---DTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDY---QILFLQGGA 76 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSST---TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTE---EEEEESSHH
T ss_pred ceEeecCCCcCCCHHHHHHHHHHhhhhc---cccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCc---eEEEECCcc
Confidence 4567788888899999999988775321 111100000 1222233346779999999997321 244444 4
Q ss_pred hHHHHHHHHhhcCC---CCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHH-HHhhcCC
Q 018318 107 SPANFAAYTAVLEP---HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEE-KALDFRP 182 (358)
Q Consensus 107 t~a~~~~l~a~~~~---gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~-~l~~~~~ 182 (358)
++|+..++.+++.+ ||.|++..+.|.+ . ..+...| .+..+ +.+++++.+|++++++ ++.+ ++
T Consensus 77 t~al~~~~~~l~~~~~~g~~vi~~~~~~~~---~-------~~~~~~g-~~~~v--~~~~~~~~~d~~~l~~~~i~~-~~ 142 (360)
T 1w23_A 77 SLQFTMLPMNLLTKGTIGNYVLTGSWSEKA---L-------KEAKLLG-ETHIA--ASTKANSYQSIPDFSEFQLNE-ND 142 (360)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSHHHHHH---H-------HHHHTTS-EEEEE--EECGGGTSCSCCCGGGCCCCT-TE
T ss_pred hHHHHHHHHHhcCCCCcccEEEecchhHHH---H-------HHHHHhC-CeEEe--ecccccCcCCccchHhhccCC-CC
Confidence 67999999888765 5556555543321 1 0123345 54444 4442245689999988 7753 78
Q ss_pred cEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCCe-eEEEEeCC
Q 018318 183 KLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA-GMIFYRKG 259 (358)
Q Consensus 183 ~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g-G~i~~~~~ 259 (358)
++|++++++|+ ...+ +|+++||+++|+|++|+.|... .++...|++++|+||+++ |.| |+++++++
T Consensus 143 k~v~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~-----~~~~~~di~~~s~sK~~~-~~G~G~~~~~~~ 211 (360)
T 1w23_A 143 AYLHITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRP-----LKVNQFGMIYAGAQKNLG-PSGVTVVIVKKD 211 (360)
T ss_dssp EEEEEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSC-----CCGGGCSEEEEETTTTTS-CTTCEEEEEEHH
T ss_pred CEEEEeCCCCCcceecc-----cccccCCceEEEechhhcCCCC-----cCcccCCEEEEEcccccC-CCCcEEEEEcHH
Confidence 99888776655 3434 3334899999999999866421 223334899999999875 666 99998874
Q ss_pred CCC-CCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHhhCC-c-e
Q 018318 260 PKP-PKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP-AFKAYAKQVKANAVALGNYLTGKG-Y-S 335 (358)
Q Consensus 260 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~G-~-~ 335 (358)
..+ +.+...... .+..... .....++++...++++..+++.+... +++.+.++.+++++++.+.|++.+ + .
T Consensus 212 ~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 286 (360)
T 1w23_A 212 LLNTKVEQVPTML--QYATHIK---SDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYV 286 (360)
T ss_dssp HHCSCCTTCCGGG--CHHHHHH---TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSE
T ss_pred HHhhcccCCcchh--hhhhhhh---ccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 321 111000000 0100000 01122455666666677777765433 467888999999999999999886 5 5
Q ss_pred eee-CC-CcceEEEEEcC
Q 018318 336 LVT-GG-TENHLVLWDLR 351 (358)
Q Consensus 336 ~~~-~~-~~~~~~~v~~~ 351 (358)
+.. +. ...+.+|+++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~ 304 (360)
T 1w23_A 287 GHAEKGSRSLMNVTFNLR 304 (360)
T ss_dssp ESSCGGGBCSSEEEEECS
T ss_pred ccCCchhccCcEEEEEcC
Confidence 431 11 23447888763
No 155
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.82 E-value=2.4e-19 Score=171.30 Aligned_cols=311 Identities=15% Similarity=0.149 Sum_probs=181.4
Q ss_pred hcccccccchHHHHHHHHHHHHh--hcceeEecc----CC---CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHH
Q 018318 8 GNSSLETVDPEIHDLIEKEKRRQ--CRGIELIAS----EN---FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEI 78 (358)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~a~----~~---~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l 78 (358)
.+++++.++++.+..+.+..... .+.+.|..+ ++ ++++.|.+++.+.+......+|+.. ....++
T Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~------~g~~~l 97 (420)
T 4f4e_A 24 LFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPI------DGIAAY 97 (420)
T ss_dssp TTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCT------TCCHHH
T ss_pred HhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCC------CCcHHH
Confidence 46778888888777666554433 345777766 22 2348999999887754222233321 122344
Q ss_pred HHHHHHHHHHhcCC--CCCCCCccccccCChHHHHHH--HHhhcCCCCeEEEecCCCCccccccccccCCccccccccee
Q 018318 79 ENLCRSRALQTFHL--DPTQWGVNVQPYSGSPANFAA--YTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYF 154 (358)
Q Consensus 79 e~~~~~~la~~~g~--~~~~~~~~v~~~sGt~a~~~~--l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 154 (358)
.+.+.+++....+. +++.+ ..+++++|++|+..+ +.++++|||+|++..|.|.++.. .+...|..+
T Consensus 98 r~~ia~~l~~~~~~~~~~~~~-~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~---------~~~~~g~~~ 167 (420)
T 4f4e_A 98 DASVQKLLLGDDSPLIAAGRV-VTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRA---------LFDMAGFEV 167 (420)
T ss_dssp HHHHHHHHHCTTCHHHHTTCE-EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH---------HHHHTTCCE
T ss_pred HHHHHHHhcCCCccccccCce-EEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHH---------HHHHcCCeE
Confidence 43333444433321 22100 124455567899888 45668999999999998876531 234466554
Q ss_pred EEeecccCCCCCCCCHHHHHHHHhhc--CCcEEEEcCCCCC--Cc---cchHHHHHHHHHhCCEEEEechhhhhhhhccc
Q 018318 155 ESLPYKVNSSTGYIDYDKLEEKALDF--RPKLIICGGSAYP--RD---WDYARFRAVADKCGALLLCDMAHISGLVAAQE 227 (358)
Q Consensus 155 ~~~~~~~~~~~~~id~~~l~~~l~~~--~~~~v~~~~~~~~--~~---~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~ 227 (358)
..+++. +++++.+|++++++++++. ++++++++.++|| .. .++++|+++|++||+++|+|+++. ++.+.+.
T Consensus 168 ~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~-~~~~~~~ 245 (420)
T 4f4e_A 168 VAYPYY-DAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQ-GFGESIE 245 (420)
T ss_dssp EEEECE-ETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TSSSCTT
T ss_pred EEeeee-ccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccc-cccCCcc
Confidence 444431 2246789999999999743 4567777777776 33 357799999999999999999963 4443210
Q ss_pred c-CCCC------CcccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHH----HhhhhcCCCCcCCCChh
Q 018318 228 A-ANPF------EYCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFED----KINFAVFPSLQGGPHNH 294 (358)
Q Consensus 228 ~-~~~~------~~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 294 (358)
. ...+ .+.++++.|++|+++ |.+.|+++..... .++.+ .+......... +++..
T Consensus 246 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~ 312 (420)
T 4f4e_A 246 ADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDS------------KDEAARVLSQLKRVIRTNYS-NPPTH 312 (420)
T ss_dssp GGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSS------------HHHHHHHHHHHHHHHHTTTS-SCCSH
T ss_pred hhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCC------------HHHHHHHHHHHHHHHhcccC-CCCHH
Confidence 0 0011 144688999999874 5667988753210 02222 22221111111 22222
Q ss_pred HHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHHHhhC----CceeeeCCCcceEEEEEc
Q 018318 295 QIGALAVALKQAS-----TPAFKAYAKQVKANAVALGNYLTGK----GYSLVTGGTENHLVLWDL 350 (358)
Q Consensus 295 ~~~al~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~----G~~~~~~~~~~~~~~v~~ 350 (358)
...+.+.++.... ...++..++++.++++++.+.|++. |+++.. +..+..+|+.+
T Consensus 313 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~ 376 (420)
T 4f4e_A 313 GGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFIN-AQRGMFSYSGL 376 (420)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH-HSCSSEEECCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEC-CCccEEEEeCC
Confidence 2222222232210 1234677788899999999999986 676654 34556677654
No 156
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.82 E-value=2.6e-19 Score=170.32 Aligned_cols=212 Identities=16% Similarity=0.151 Sum_probs=145.7
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCccccccc
Q 018318 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATS 151 (358)
Q Consensus 72 ~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g 151 (358)
.+...++| +.+++++|.+. .+++++|++|+..++. ++++||+|++..+.|++.+.... ..+...|
T Consensus 66 ~p~~~~l~----~~la~~~g~~~-----~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~-----~~~~~~G 130 (403)
T 3cog_A 66 NPTRNCLE----KAVAALDGAKY-----CLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFR-----QVASEFG 130 (403)
T ss_dssp CHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHH-----HTGGGGT
T ss_pred CchHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHH-----HHHHHcC
Confidence 35556666 78899999874 3778899999999998 89999999999999876432110 0123345
Q ss_pred ceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHHhC-CEEEEechhhhhhhhcccc
Q 018318 152 IYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADKCG-ALLLCDMAHISGLVAAQEA 228 (358)
Q Consensus 152 ~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~g-~~lvvD~a~~~g~~~~~~~ 228 (358)
. +++.++. .|++++++++++ ++++|++++++|+ ...|+++|.++|+++| +++|+|++|+.+...
T Consensus 131 ~--~v~~v~~------~d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~---- 197 (403)
T 3cog_A 131 L--KISFVDC------SKIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQ---- 197 (403)
T ss_dssp C--EEEEECT------TSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTC----
T ss_pred C--EEEEECC------CCHHHHHHhcCc-CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccC----
Confidence 4 4444432 189999999875 7899988877766 5779999999999999 999999998765421
Q ss_pred CCCCC-cccEEEecCCccCCCCC---eeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHH
Q 018318 229 ANPFE-YCHIVTTTTHKSLRGPR---AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALK 304 (358)
Q Consensus 229 ~~~~~-~~d~~~~s~~K~l~g~~---gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~ 304 (358)
.+++ ++|++++|+||+|+||. +|+++++++ ++.+.+....... ....+.... +++++
T Consensus 198 -~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~--------------~l~~~l~~~~~~~-g~~~~~~~~---~~~~~ 258 (403)
T 3cog_A 198 -RPLALGADISMYSATKYMNGHSDVVMGLVSVNCE--------------SLHNRLRFLQNSL-GAVPSPIDC---YLCNR 258 (403)
T ss_dssp -CTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCH--------------HHHHHHHHHHHHH-CCCCCHHHH---HHHHH
T ss_pred -CccccCCeEEEEcChhhccCCCCCeEEEEEECcH--------------HHHHHHHHHHHhc-CCCCCHHHH---HHHHh
Confidence 3444 78999999999998764 599998653 4555444322111 111222222 22222
Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 018318 305 QASTPAFKAYAKQVKANAVALGNYLTGK 332 (358)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (358)
.+. .+..+.++..+|+..+.++|+++
T Consensus 259 ~l~--~l~~r~~~~~~n~~~l~~~l~~~ 284 (403)
T 3cog_A 259 GLK--TLHVRMEKHFKNGMAVAQFLESN 284 (403)
T ss_dssp HHT--THHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhh--HHHHHHHHHHHHHHHHHHHHhcC
Confidence 222 23456777788888888888765
No 157
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.81 E-value=2.5e-19 Score=170.16 Aligned_cols=220 Identities=17% Similarity=0.164 Sum_probs=149.5
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccc
Q 018318 62 GMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYT 141 (358)
Q Consensus 62 g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~ 141 (358)
++.++++ +.+...+|| +++++++|.+. .++++||++|+.+ +.+++++||+|++..+.|++.+....
T Consensus 58 ~~~y~r~--~~p~~~~l~----~~la~l~g~~~-----~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~-- 123 (400)
T 3nmy_A 58 GFEYSRT--HNPTRFAYE----RCVAALEGGTR-----AFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFE-- 123 (400)
T ss_dssp SCCBTTT--CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHH--
T ss_pred CcccccC--CCHHHHHHH----HHHHHHhCCCC-----EEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHH--
Confidence 4444443 456677777 77999999874 3678899989887 56788999999999998875432110
Q ss_pred cCCcc-cccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechh
Q 018318 142 SGGKK-ISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAH 218 (358)
Q Consensus 142 ~~~~~-~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~ 218 (358)
.. +...|. ++++++. .|++++++++++ ++++|++++++|+ ...|+++|.++|++||+++|+|++|
T Consensus 124 ---~~~~~~~g~--~~~~v~~------~d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~ 191 (400)
T 3nmy_A 124 ---RVRRRTAGL--DFSFVDL------TDPAAFKAAIRA-DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTF 191 (400)
T ss_dssp ---HTHHHHHCC--EEEEECT------TSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred ---HhhHhhcCe--EEEEECC------CCHHHHHHHhcc-CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCC
Confidence 00 111344 4444432 389999999975 7899988877765 5679999999999999999999998
Q ss_pred hhhhhhccccCCCCC-cccEEEecCCccCCCC---Cee-EEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCCh
Q 018318 219 ISGLVAAQEAANPFE-YCHIVTTTTHKSLRGP---RAG-MIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHN 293 (358)
Q Consensus 219 ~~g~~~~~~~~~~~~-~~d~~~~s~~K~l~g~---~gG-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (358)
+.+... .++. ++|+++.|++|+++|+ .|| ++++.++ ++.+.+....... ....+
T Consensus 192 ~~~~~~-----~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~--------------~~~~~l~~~~~~~-g~~~~- 250 (400)
T 3nmy_A 192 ASPMLQ-----RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNA--------------ELAEQMAFLQNSI-GGVQG- 250 (400)
T ss_dssp THHHHC-----CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCH--------------HHHHHHHHHHHHH-CCBCC-
T ss_pred cccccC-----ChhhcCCcEEEecCccccCCCCCcceeEEEEeCCH--------------HHHHHHHHHHHhc-CCCCC-
Confidence 766432 2334 7999999999999876 467 6666553 4545444321111 11111
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 018318 294 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (358)
Q Consensus 294 ~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (358)
+ .. .+.+++.+. .+..+++++.++++++.++|++.
T Consensus 251 ~-~~-a~~~l~~l~--~l~~r~~~~~~~a~~l~~~L~~~ 285 (400)
T 3nmy_A 251 P-FD-SFLALRGLK--TLPLRMRAHCENALALAQWLETH 285 (400)
T ss_dssp H-HH-HHHHHHHHT--THHHHHHHHHHHHHHHHHHHTTC
T ss_pred H-HH-HHHHHHhHh--HHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 11 223333332 35677888999999999999886
No 158
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.81 E-value=3.9e-19 Score=170.29 Aligned_cols=283 Identities=11% Similarity=0.022 Sum_probs=173.7
Q ss_pred hcceeEeccCC-C--CCHHH--HHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhc-----CCCCCCCCcc
Q 018318 31 CRGIELIASEN-F--TSFAV--IEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF-----HLDPTQWGVN 100 (358)
Q Consensus 31 ~~~~~l~a~~~-~--~~~~V--~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~-----g~~~~~~~~~ 100 (358)
++.+.+..+.. . .+|.+ .+++.+.+......+|+.. ....+++ +.+++++ +++++++...
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~------~g~~~lr----~~ia~~~~~~~~~~~~~~~~~i 116 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPP------QGIEELR----DLWQQKMLRDNPELSIDNMSRP 116 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCT------TCCHHHH----HHHHHHHHHHCTTCCGGGBCCC
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCC------CCCHHHH----HHHHHHHhccCcccCCCccceE
Confidence 34566766654 2 25656 7777766543111233221 1223454 4455555 6655320002
Q ss_pred ccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCccccc-ccceeEEeecccCCCCCCCCHHHHHHHHhh
Q 018318 101 VQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISA-TSIYFESLPYKVNSSTGYIDYDKLEEKALD 179 (358)
Q Consensus 101 v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~id~~~l~~~l~~ 179 (358)
+++++|++|+..++.++++|||+|++..|.|.++.. .+.. .|.. ++.++.+.+++.+|++++++++++
T Consensus 117 ~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~---------~~~~~~g~~--~~~~~~~~~~~~~d~~~l~~~l~~ 185 (430)
T 2x5f_A 117 IVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL---------VFNTRNGAN--LQTYPIFDKDGHYTTDSLVEALQS 185 (430)
T ss_dssp EEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH---------HHTTTTCCE--EEEECCBCTTSCBCSHHHHHHHHH
T ss_pred EEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHH---------HHHHhcCCe--EEEEeccCccCCcCHHHHHHHHHh
Confidence 444455789999999999999999999998876531 2334 5554 444454432367999999999975
Q ss_pred c--CCcEEEEcCCCCC--Cccc---hHHHHHHHHH-----hCCEEEEechhhhhhhhccc-cCC---CC---Ccc---cE
Q 018318 180 F--RPKLIICGGSAYP--RDWD---YARFRAVADK-----CGALLLCDMAHISGLVAAQE-AAN---PF---EYC---HI 237 (358)
Q Consensus 180 ~--~~~~v~~~~~~~~--~~~~---l~~i~~la~~-----~g~~lvvD~a~~~g~~~~~~-~~~---~~---~~~---d~ 237 (358)
. ++++|++++++|| ...+ +++|.++|++ ||+++|+|++|+.. .+.+. ... .+ .+. ++
T Consensus 186 ~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i 264 (430)
T 2x5f_A 186 YNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGL-FYEDVYTQSLFTALTNLHSNAILPI 264 (430)
T ss_dssp CCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTC-BCSSSCCSCHHHHHHTTCCTTEEEE
T ss_pred cCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccc-cCCcccchHHHHHHhhccCCcceEE
Confidence 3 5788888877776 4455 8899999999 99999999997632 22221 111 11 134 67
Q ss_pred EEecCCccCC--CCCeeEEEE---eCCCCCCCCCCCCCccccHHHHhhhhcCC---CCcCCCChhHHHHHHHHHH-Hh-c
Q 018318 238 VTTTTHKSLR--GPRAGMIFY---RKGPKPPKKGQPEGAVYDFEDKINFAVFP---SLQGGPHNHQIGALAVALK-QA-S 307 (358)
Q Consensus 238 ~~~s~~K~l~--g~~gG~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~al~~al~-~~-~ 307 (358)
+++|+||+++ |.+.|++++ ++ ++.+.+...... ....+++....+++..+++ .. .
T Consensus 265 ~~~s~sK~~~~~G~riG~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 329 (430)
T 2x5f_A 265 RLDGATKEFFAWGFRVGFMTFGTSDQ---------------TTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQF 329 (430)
T ss_dssp EEEEHHHHTTCGGGCCEEEEEBCCCH---------------HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHH
T ss_pred EEEecccCCCCCCCCeEEEEEecCCH---------------HHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHH
Confidence 8999999874 445699998 55 344444332111 0112334444444455554 21 0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHh----hCCceeeeCCCcceEEEEEcC
Q 018318 308 TPAFKAYAKQVKANAVALGNYLT----GKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~L~----~~G~~~~~~~~~~~~~~v~~~ 351 (358)
.+++....+++.++++++.+.|+ +.|+++.. +..+..+|+++.
T Consensus 330 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~-~~~g~~~~~~~~ 376 (430)
T 2x5f_A 330 DKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYD-FNSGYFMAIKVH 376 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECC-CCBSSEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeC-CCceEEEEeCCC
Confidence 12234477888899999999998 66888764 445667888875
No 159
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.81 E-value=1.2e-18 Score=162.89 Aligned_cols=228 Identities=15% Similarity=0.093 Sum_probs=148.6
Q ss_pred HHHHHHhcCCCCCCCCccccccCC-hHHHHHHHHhhcCCC-CeEEEecCCCCccccccccccCCcccccccceeEEeecc
Q 018318 83 RSRALQTFHLDPTQWGVNVQPYSG-SPANFAAYTAVLEPH-DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK 160 (358)
Q Consensus 83 ~~~la~~~g~~~~~~~~~v~~~sG-t~a~~~~l~a~~~~g-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 160 (358)
++.+++++|++++ .|++++| ++++..++.++++|| |+|+++.|.|.++.. .+...|.. ++.++
T Consensus 64 r~~la~~~~~~~~----~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~---------~~~~~g~~--~~~v~ 128 (356)
T 1fg7_A 64 IENYAQYAGVKPE----QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSV---------SAETIGVE--CRTVP 128 (356)
T ss_dssp HHHHHHHHTSCGG----GEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHH---------HHHHHTCE--EEECC
T ss_pred HHHHHHHhCCChH----HEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHH---------HHHHcCCE--EEEee
Confidence 4788899998764 3555555 679999999999999 999999998876431 22345654 44444
Q ss_pred cCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--
Q 018318 161 VNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-- 233 (358)
Q Consensus 161 ~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-- 233 (358)
.+ +++.+|+++++++++ ++++|++++++|| ...| +++|+++|+ +|+++|+|++|+.. ..........+
T Consensus 129 ~~-~~~~~d~~~l~~~i~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~-~~~~~~~~~~~~~ 203 (356)
T 1fg7_A 129 TL-DNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEF-CPQASLAGWLAEY 203 (356)
T ss_dssp CC-TTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGG-SGGGCSGGGTTTC
T ss_pred CC-CCCCCCHHHHHHHhc--CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhh-cCCCcHHHHHhhC
Confidence 44 356799999999885 6888888888776 4555 455566666 99999999997633 21111111112
Q ss_pred cccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHH
Q 018318 234 YCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAF 311 (358)
Q Consensus 234 ~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~ 311 (358)
+.++++.|+||+++ |.+.|++++++ ++.+.+.....++ +.+....++..+++.....+.+
T Consensus 204 ~~~i~~~s~sK~~g~~G~r~G~~~~~~---------------~~~~~l~~~~~~~---~~~~~~~~a~~~~l~~~~~~~~ 265 (356)
T 1fg7_A 204 PHLAILRTLSKAFALAGLRCGFTLANE---------------EVINLLMKVIAPY---PLSTPVADIAAQALSPQGIVAM 265 (356)
T ss_dssp TTEEEEEESSSTTCCGGGCCEEEEECH---------------HHHHHHHHHSCSS---CSCHHHHHHHHHHTSHHHHHHH
T ss_pred CCEEEEecchHhhcCchhhhEEEEeCH---------------HHHHHHHHhcCCC---CCCHHHHHHHHHHhcCccHHHH
Confidence 45789999999873 55679999866 4555555433222 2333333333333322100115
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC--ceeeeCCCcceEEEEEc
Q 018318 312 KAYAKQVKANAVALGNYLTGKG--YSLVTGGTENHLVLWDL 350 (358)
Q Consensus 312 ~~~~~~~~~~~~~l~~~L~~~G--~~~~~~~~~~~~~~v~~ 350 (358)
+...++..++++++.+.|++.| +.+. +..+..+|+++
T Consensus 266 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~~~ 304 (356)
T 1fg7_A 266 RERVAQIIAEREYLIAALKEIPCVEQVF--DSETNYILARF 304 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTEEEEC--CCSSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEC--CCCCeEEEEEC
Confidence 6777888899999999999886 4433 23455678876
No 160
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.81 E-value=6.7e-18 Score=161.57 Aligned_cols=245 Identities=12% Similarity=0.094 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHhcCCCCCC------CCccccccCC-hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCccccc
Q 018318 77 EIENLCRSRALQTFHLDPTQ------WGVNVQPYSG-SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISA 149 (358)
Q Consensus 77 ~le~~~~~~la~~~g~~~~~------~~~~v~~~sG-t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 149 (358)
++.+.+.+++++.+|.+... . ..|++++| ++|+..++.++++|||+|++..|.|.++.. .++.
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---------~~~~ 151 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQ-MDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQ---------SLHP 151 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTC-EEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH---------HHGG
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCc-CcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH---------HHHH
Confidence 44455567888888876410 0 13555655 579999999999999999999998876431 2344
Q ss_pred ccceeEEeecccCCCCCCCCHHHHHHHHhh-----------cCCcEEEE-cCCCCC--Cccc---hHHHHHHHHHhCCEE
Q 018318 150 TSIYFESLPYKVNSSTGYIDYDKLEEKALD-----------FRPKLIIC-GGSAYP--RDWD---YARFRAVADKCGALL 212 (358)
Q Consensus 150 ~g~~~~~~~~~~~~~~~~id~~~l~~~l~~-----------~~~~~v~~-~~~~~~--~~~~---l~~i~~la~~~g~~l 212 (358)
.|..+ +.++.+. + .+|++++++++++ .++++|++ ++++|| ...+ +++|.++|++||+++
T Consensus 152 ~g~~~--~~v~~~~-~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~l 227 (425)
T 2r2n_A 152 LGCNI--INVASDE-S-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLI 227 (425)
T ss_dssp GTCEE--EEECEET-T-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred cCCEE--EEeCcCC-C-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 56544 4444442 2 4899999999973 25788765 555665 4454 559999999999999
Q ss_pred EEechhhhhhhhccccCCCC---C--cccEEEecCCccCC-CCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCC
Q 018318 213 LCDMAHISGLVAAQEAANPF---E--YCHIVTTTTHKSLR-GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPS 286 (358)
Q Consensus 213 vvD~a~~~g~~~~~~~~~~~---~--~~d~~~~s~~K~l~-g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (358)
|+|++|+ ++.+.+....++ + +.++++.|+||+++ |.+.|++++++ ++.+.+.......
T Consensus 228 i~De~~~-~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~---------------~l~~~l~~~~~~~ 291 (425)
T 2r2n_A 228 IEDDPYY-FLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPK---------------PLIERVILHIQVS 291 (425)
T ss_dssp EEECTTG-GGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEH---------------HHHHHHHHHHHTT
T ss_pred EEECCcc-cccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCH---------------HHHHHHHHHHHHh
Confidence 9999976 333322211122 1 34588999999984 45679999987 3555444322111
Q ss_pred CcCCCChhHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHhhC--CceeeeCCCcceEEEEEcCC
Q 018318 287 LQGGPHNHQIGALAVALKQAST----PAFKAYAKQVKANAVALGNYLTGK--GYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 287 ~~~~~~~~~~~al~~al~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~--G~~~~~~~~~~~~~~v~~~~ 352 (358)
. .+++....+++..++..... ..++...+++.++++++.+.|++. |+..+..+..++.+|+++..
T Consensus 292 ~-~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~ 362 (425)
T 2r2n_A 292 T-LHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKG 362 (425)
T ss_dssp T-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETT
T ss_pred c-CCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCC
Confidence 1 12344444444555554211 123555677788889999999885 77422234677889998853
No 161
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.81 E-value=6e-19 Score=167.06 Aligned_cols=214 Identities=16% Similarity=0.112 Sum_probs=146.8
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCccccccc
Q 018318 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATS 151 (358)
Q Consensus 72 ~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g 151 (358)
.+...+++ +++++++|.+. .++++||++|+..++.+++++||+|++..+.|++...... ..+...|
T Consensus 58 ~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~-----~~~~~~g 123 (389)
T 3acz_A 58 NPTVEQFE----EMVCSIEGAAG-----SAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFT-----HWLPRFG 123 (389)
T ss_dssp CHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHH-----HHHHHTT
T ss_pred ChHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH-----HHHHHcC
Confidence 45555665 78999999874 3678899999999999999999999999998876432110 0023345
Q ss_pred ceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccC
Q 018318 152 IYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAA 229 (358)
Q Consensus 152 ~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~ 229 (358)
. +++.++. .|++++++++++ ++++|++++++|+ ...|+++|.++|++||+++|+|++|+.+...
T Consensus 124 ~--~~~~v~~------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~----- 189 (389)
T 3acz_A 124 I--EVDLIDT------SDVEKVKAAWKP-NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFL----- 189 (389)
T ss_dssp C--EEEEECT------TCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC-----
T ss_pred C--EEEEECC------CCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccc-----
Confidence 4 3444432 589999999875 6889988877665 5779999999999999999999998766421
Q ss_pred CCCC-cccEEEecCCccCCCCC---eeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHH
Q 018318 230 NPFE-YCHIVTTTTHKSLRGPR---AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQ 305 (358)
Q Consensus 230 ~~~~-~~d~~~~s~~K~l~g~~---gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~ 305 (358)
.+++ ++|++++|+||+++|+. ||+++++++ ++.+.+....... .++.+.. . ..+++..
T Consensus 190 ~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~--------------~~~~~l~~~~~~~-g~~~~~~--~-~~~~~~~ 251 (389)
T 3acz_A 190 KPLELGADIALHSVSKYINGHGDVIGGVSSAKTA--------------EDIATIKFYRKDA-GSLMAPM--D-AFLCARG 251 (389)
T ss_dssp CGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSH--------------HHHHHHHHHHHHH-CCCCCHH--H-HHHHHHH
T ss_pred CccccCCeEEEECChhhccCCCCceeEEEEECcH--------------HHHHHHHHHHHhc-CCCCCHH--H-HHHHHcC
Confidence 2334 78999999999997764 589888872 2444443322111 1111211 1 1222332
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHhhCC
Q 018318 306 ASTPAFKAYAKQVKANAVALGNYLTGKG 333 (358)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G 333 (358)
+. .+..+.++..++++.+.+.|++++
T Consensus 252 l~--~l~~r~~~~~~~~~~l~~~l~~~~ 277 (389)
T 3acz_A 252 MK--TLPIRMQIHMENGLKVAKFLEQHE 277 (389)
T ss_dssp HT--THHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cc--HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22 245567778889999999998863
No 162
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.80 E-value=6.8e-18 Score=160.98 Aligned_cols=231 Identities=16% Similarity=0.114 Sum_probs=144.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccc
Q 018318 73 EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI 152 (358)
Q Consensus 73 ~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~ 152 (358)
+...+++ +++++++|.+. .+++++|++|+..++.+++++||+|+++.++|++.+.... ..+...|.
T Consensus 56 ~~~~~l~----~~la~~~g~~~-----~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~-----~~~~~~g~ 121 (412)
T 2cb1_A 56 PTAKALE----ERLKALEGALE-----AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFG-----QVLSLMGV 121 (412)
T ss_dssp HHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHH-----HTTTTTTC
T ss_pred hHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH-----HHHHHcCC
Confidence 4455555 88999999874 3667888999999999999999999999998876432110 01223454
Q ss_pred eeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCC
Q 018318 153 YFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAAN 230 (358)
Q Consensus 153 ~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~ 230 (358)
+++.++ +|++++++++++ ++++|+++.++|+ ...|+++|.++|++||+++|+|++|+.+... ..
T Consensus 122 --~~~~~~-------~~~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~----~~ 187 (412)
T 2cb1_A 122 --TVRYVD-------PEPEAVREALSA-KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGAL----CR 187 (412)
T ss_dssp --EEEEEC-------SSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTS----CC
T ss_pred --EEEEEC-------CCHHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccc----CC
Confidence 344443 248999999875 7888888776654 6779999999999999999999999765111 12
Q ss_pred CCC-cccEEEecCCccCCCCCe--eEEEE-eCCCC-----CCC---CCCCCCc-----cccHHHHhhhhcCCCCcCCCCh
Q 018318 231 PFE-YCHIVTTTTHKSLRGPRA--GMIFY-RKGPK-----PPK---KGQPEGA-----VYDFEDKINFAVFPSLQGGPHN 293 (358)
Q Consensus 231 ~~~-~~d~~~~s~~K~l~g~~g--G~i~~-~~~~~-----~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 293 (358)
+.. ++|++++|+||++++|.+ |++++ +++.. .+. ..+ ... ..++.+.++...... .+....
T Consensus 188 ~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~r~~~~~~-~g~~~~ 265 (412)
T 2cb1_A 188 PLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKG-QIPWEALRARCFPERVRTLGLSL-CGMALS 265 (412)
T ss_dssp GGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC--------HHHHGGGHHHHHHHHHHTTT-TCCCCC
T ss_pred ccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccc-cchhhccchHHHHHHHHHHHHHh-cCCCCC
Confidence 233 789999999999977643 55544 43310 000 000 000 001222333221111 121111
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-Cceee
Q 018318 294 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLV 337 (358)
Q Consensus 294 ~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~ 337 (358)
+ .. .+.++..+ +.+..+.++..++++++.+.|.+. ++.+.
T Consensus 266 ~-~~-a~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v 306 (412)
T 2cb1_A 266 P-FN-AYLLFQGL--ETVALRVARMSETARFLAERLQGHPKVKAL 306 (412)
T ss_dssp H-HH-HHHHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTCSEE
T ss_pred h-HH-hHHHHcCC--chHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 1 11 12222222 234566777889999999999886 78744
No 163
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.80 E-value=1.4e-18 Score=169.67 Aligned_cols=269 Identities=12% Similarity=0.019 Sum_probs=165.2
Q ss_pred CCHHHHHHHhcccccCCC---CCCCCCCCCCCchhHHHHHHHHHHHHHHhcC-CC--CCCCCccccccCC-hHHHHHHHH
Q 018318 43 TSFAVIEALGSALTNKYS---EGMPGNRYYGGNEFIDEIENLCRSRALQTFH-LD--PTQWGVNVQPYSG-SPANFAAYT 115 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~---~g~~~~~~~~~~~~~~~le~~~~~~la~~~g-~~--~~~~~~~v~~~sG-t~a~~~~l~ 115 (358)
.|..+++++.+.+....+ .+|+.. .....+++.+.+++++..| .+ ++ .|++++| ++|+..++.
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~------~G~~~lr~~ia~~~~~~~gG~~~~~~----~i~~t~G~~~ai~~~~~ 171 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSAS------QGVNCIREDVAAYITRRDGGVPADPD----NIYLTTGASDGISTILK 171 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------C------CSCHHHHHHHHHHHHHHTTTCCCCGG----GEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCC------CCHHHHHHHHHHHHHHhcCCCCCCcc----cEEEcCCHHHHHHHHHH
Confidence 356666666555543211 123322 2223455555677777774 43 32 3445555 579999999
Q ss_pred hhcCCCC----eEEEecCCCCccccccccccCCcccccccceeEEeecccCCC-CCCCCHHHHHHHHhhc----CCcEEE
Q 018318 116 AVLEPHD----RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS-TGYIDYDKLEEKALDF----RPKLII 186 (358)
Q Consensus 116 a~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~l~~~----~~~~v~ 186 (358)
+++++|| .|+++.|.|.++.. .+...|.. +++++.+++ ++.+|++++++++++. ++++|+
T Consensus 172 ~l~~~gd~~~d~Vlv~~p~y~~~~~---------~~~~~g~~--~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~ 240 (498)
T 3ihj_A 172 ILVSGGGKSRTGVMIPIPQYPLYSA---------VISELDAI--QVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLC 240 (498)
T ss_dssp HHCCCCGGGSEEEEEEESCCTHHHH---------HHHHTTCE--EEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHcCCCCCCCCEEEEeCCCchhHHH---------HHHHcCCE--EEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEE
Confidence 9998875 99999998876531 23445654 444444422 4689999999999764 478888
Q ss_pred EcCCCCCC--c---cchHHHHHHHHHhCCEEEEechhhhhhhhccc-cCCCCCc------------c-cEEEecCCccC-
Q 018318 187 CGGSAYPR--D---WDYARFRAVADKCGALLLCDMAHISGLVAAQE-AANPFEY------------C-HIVTTTTHKSL- 246 (358)
Q Consensus 187 ~~~~~~~~--~---~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~-~~~~~~~------------~-d~~~~s~~K~l- 246 (358)
+++++||+ . .++++|.++|++||+++|+|++|... .+.+. ...++.. . -+++.|+||.+
T Consensus 241 l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 319 (498)
T 3ihj_A 241 IINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDN-VYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYM 319 (498)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC-BCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTT
T ss_pred EECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcccc-ccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccc
Confidence 87888773 3 35788999999999999999997543 33221 1112211 1 26778999998
Q ss_pred --CCCCeeEEEE--eCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHH----------HhccHHHH
Q 018318 247 --RGPRAGMIFY--RKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALK----------QASTPAFK 312 (358)
Q Consensus 247 --~g~~gG~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~----------~~~~~~~~ 312 (358)
+|.++|+++. .++ ++.+.+....... ..++.....++..++. ... .+..
T Consensus 320 G~~G~R~G~~~~~~~~~--------------~l~~~l~~~~~~~--~~~~~~~q~a~~~~l~~~~~g~~~~~~~~-~~~~ 382 (498)
T 3ihj_A 320 GECGYRGGYMEVINLHP--------------EIKGQLVKLLSVR--LCPPVSGQAAMDIVVNPPVAGEESFEQFS-REKE 382 (498)
T ss_dssp CCSSSCCEEEEEESCCH--------------HHHHHHHHHHHHS--CCCCHHHHHHHHHHTCCCCTTSTTHHHHH-HHHH
T ss_pred cCcccceEEEEEecCCH--------------HHHHHHHHHHhcc--CCCCHHHHHHHHHHhcCCccCcccHHHHH-HHHH
Confidence 4778899985 232 4555544322111 1233333333333332 111 1235
Q ss_pred HHHHHHHHHHHHHHHHHhhC-CceeeeCCCcceEEEEEcC
Q 018318 313 AYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 313 ~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~~~~~v~~~ 351 (358)
...+++.++++++.+.|++. |+++.. +..+..+|+++.
T Consensus 383 ~~~~~l~~~~~~l~~~L~~~~g~~~~~-p~gg~~~~~~l~ 421 (498)
T 3ihj_A 383 SVLGNLAKKAKLTEDLFNQVPGIHCNP-LQGAMYAFPRIF 421 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTEECCC-CCBSSEECCEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEecC-CCeEEEEEEecc
Confidence 66678889999999999997 888865 456667787653
No 164
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.80 E-value=1.2e-18 Score=160.92 Aligned_cols=207 Identities=16% Similarity=0.137 Sum_probs=139.3
Q ss_pred HHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccC
Q 018318 83 RSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (358)
Q Consensus 83 ~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (358)
++++++++|++. .+++++|++|+..++.+++++||+|+++.++|+++..... ......|. +++.++.
T Consensus 4 ~~~la~~~g~~~-----~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-----~~~~~~g~--~~~~~~~- 70 (331)
T 1pff_A 4 EGKIAKLEHAEA-----CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFE-----HQLRKFGV--EVDFIDM- 70 (331)
T ss_dssp HHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH-----THHHHTTC--EEEEECT-
T ss_pred HHHHHHHhCCCe-----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHH-----HHHHhcCC--EEEEeCC-
Confidence 478999999873 3678899999999999999999999999998876532110 00112454 3444432
Q ss_pred CCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHH-hCCEEEEechhhhhhhhccccCCCCC-cccEE
Q 018318 163 SSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADK-CGALLLCDMAHISGLVAAQEAANPFE-YCHIV 238 (358)
Q Consensus 163 ~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~-~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~ 238 (358)
.|++++++++++ ++++|++++++|+ ...|+++|.++|++ +|+++++|++|+.|... .+++ ++|++
T Consensus 71 -----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~-----~~~~~~~d~~ 139 (331)
T 1pff_A 71 -----AVPGNIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILT-----NPLDLGVDIV 139 (331)
T ss_dssp -----TSTTHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHC-----CGGGGTCSEE
T ss_pred -----CCHHHHHHhhcC-CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccC-----ChhhcCCcEE
Confidence 578999998864 6888888777654 67799999999999 99999999999877542 1224 78999
Q ss_pred EecCCccCCCCC---eeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHH
Q 018318 239 TTTTHKSLRGPR---AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315 (358)
Q Consensus 239 ~~s~~K~l~g~~---gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~ 315 (358)
++|+||+|++|. +|+++++++ ++.+.+......+..++.+.....++..+++. +..+.
T Consensus 140 ~~s~~K~~~~~~~r~~G~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~ 200 (331)
T 1pff_A 140 VHSATKYINGHTDVVAGLVCSRAD--------------IIAKVKSQGIKDITGAIISPHDAWLITRGTLT-----LDMRV 200 (331)
T ss_dssp EEETTTTTSSSSSCCCEEEEECHH--------------HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHH
T ss_pred EEECccccCCCCCceEEEEEeCcH--------------HHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch-----HHHHH
Confidence 999999987653 689988772 35555554332201122332222222223322 23445
Q ss_pred HHHHHHHHHHHHHHhhC
Q 018318 316 KQVKANAVALGNYLTGK 332 (358)
Q Consensus 316 ~~~~~~~~~l~~~L~~~ 332 (358)
++..++++.+.+.|+++
T Consensus 201 ~~~~~~~~~~~~~l~~~ 217 (331)
T 1pff_A 201 KRAAENAQKVAEFLHEH 217 (331)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 55666777777777654
No 165
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.80 E-value=1e-18 Score=167.94 Aligned_cols=256 Identities=10% Similarity=0.006 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHhcCC--CCCCCCccccccCChHHHHHHHHhhcCCCC--------------eEEEe-cCCCCccccc
Q 018318 75 IDEIENLCRSRALQTFHL--DPTQWGVNVQPYSGSPANFAAYTAVLEPHD--------------RIMGL-DLPSGGHLTH 137 (358)
Q Consensus 75 ~~~le~~~~~~la~~~g~--~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd--------------~Vl~~-~~~~~~~~~~ 137 (358)
..++++.+.+++.+.+|. ++++ ++++++|++|+..++.+++++|| +|+++ .|+|.++...
T Consensus 85 ~~~lr~~ia~~l~~~~g~~~~~~~---i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~ 161 (444)
T 3if2_A 85 DSAFIDALVGFFNRHYDWNLTSEN---IALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDV 161 (444)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGG---EEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTC
T ss_pred CHHHHHHHHHHHHhhcCCCCCHHH---EEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhc
Confidence 345665555666555554 4431 24444556799999999999998 78775 7777665421
Q ss_pred cccccCCcccccccceeEEeecccCCCC----CCCCHHHHHHHHh--hcCCcEEEEcCCCCC--Cccc---hHHHHHHHH
Q 018318 138 GYYTSGGKKISATSIYFESLPYKVNSST----GYIDYDKLEEKAL--DFRPKLIICGGSAYP--RDWD---YARFRAVAD 206 (358)
Q Consensus 138 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~id~~~l~~~l~--~~~~~~v~~~~~~~~--~~~~---l~~i~~la~ 206 (358)
.... . .+.+.+..+++++.+.++ +.+|+++++++++ ..++++|++++++|+ ...| +++|.++|+
T Consensus 162 ~~~~---~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~ 236 (444)
T 3if2_A 162 HVEG---Q--HFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAK 236 (444)
T ss_dssp CSSS---C--CEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred cccc---c--hhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHH
Confidence 1000 0 112223345555554222 3799999999842 236788888777765 4556 889999999
Q ss_pred HhCCEEEEechhhhhhhhccccCC--CCCcccEEEecCCccC-CCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhc
Q 018318 207 KCGALLLCDMAHISGLVAAQEAAN--PFEYCHIVTTTTHKSL-RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAV 283 (358)
Q Consensus 207 ~~g~~lvvD~a~~~g~~~~~~~~~--~~~~~d~~~~s~~K~l-~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (358)
+||+++|+|++|+.++........ ...+.+++++|+||++ +|.+.|+++.++ ++.+.+....
T Consensus 237 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~---------------~l~~~~~~~~ 301 (444)
T 3if2_A 237 RYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADA---------------KVIEAVSAMN 301 (444)
T ss_dssp HTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCH---------------HHHHHHHHHH
T ss_pred HCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhccCCCCceEEEEECH---------------HHHHHHHHHH
Confidence 999999999998643211100011 1125679999999973 345669988876 3544443321
Q ss_pred CCCCcCCCChhHHHHHHHHHHHhcc-HHHHH-HHHHHHHHHHHHHHHHhh----CCceeeeCCCcceEEEEEcCCCCC
Q 018318 284 FPSLQGGPHNHQIGALAVALKQAST-PAFKA-YAKQVKANAVALGNYLTG----KGYSLVTGGTENHLVLWDLRPLGL 355 (358)
Q Consensus 284 ~~~~~~~~~~~~~~al~~al~~~~~-~~~~~-~~~~~~~~~~~l~~~L~~----~G~~~~~~~~~~~~~~v~~~~~~~ 355 (358)
.....+ ++....+++...+..... ....+ ..+++.++++++.+.|.+ .++.+.. +..++.+|+++...++
T Consensus 302 ~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~ 377 (444)
T 3if2_A 302 AVVNLA-PTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHK-PEGAIFLWLWFKDLPI 377 (444)
T ss_dssp HHHHSS-CCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEEC-CCBSSEEEEEETTCSS
T ss_pred HhccCC-CChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEec-CCccEEEEEEcCCCCC
Confidence 111111 122222222233322110 01111 344455566666666654 3666654 4567788998865333
No 166
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.80 E-value=1.7e-19 Score=171.40 Aligned_cols=239 Identities=9% Similarity=0.040 Sum_probs=154.7
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChH-HHHHHHHhhc---CCCCeEEEecCCCCccccccccccCCcc
Q 018318 71 GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP-ANFAAYTAVL---EPHDRIMGLDLPSGGHLTHGYYTSGGKK 146 (358)
Q Consensus 71 ~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~-a~~~~l~a~~---~~gd~Vl~~~~~~~~~~~~~~~~~~~~~ 146 (358)
+.+....+|+.+..|+.+++|.+... ..++++++|. ++.+++.+.. .+++.|+++...|.+.+ +.
T Consensus 92 ~~~~~~~~e~~~~~~~~~~lGlp~~~--~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~---------kA 160 (450)
T 3bc8_A 92 GSSLLNKITNSLVLNVIKLAGVHSVA--SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF---------KS 160 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCC--EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH---------HH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCCc--eEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHH---------HH
Confidence 34455678888889999999998642 2244455554 4444444432 13889999887776544 34
Q ss_pred cccccceeEEeecccCCCCCCCCHHHHHHHHhhcC---CcEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhh
Q 018318 147 ISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFR---PKLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISG 221 (358)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~---~~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g 221 (358)
+.+.|.+...++...+++.+.+|+++|+++|++++ +.+|++..+.++ ...|+++|+++||+||++++||+||+..
T Consensus 161 l~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~ 240 (450)
T 3bc8_A 161 MVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQ 240 (450)
T ss_dssp HHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTT
T ss_pred HHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchh
Confidence 56678765555433333467899999999998754 233444555665 5789999999999999999999998754
Q ss_pred hhhccccC-CCC--CcccEEEecCCccCCCCCe-eEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHH
Q 018318 222 LVAAQEAA-NPF--EYCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIG 297 (358)
Q Consensus 222 ~~~~~~~~-~~~--~~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (358)
+.....++ ..+ +++|+++.|+|||+..|.+ ++++.+++ ++.+.+... +++.++ ..+. .
T Consensus 241 ~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~--------------~~~~~~~~~-~~g~~s--~Sps-L 302 (450)
T 3bc8_A 241 SSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE--------------PFIQDISKM-YPGRAS--ASPS-L 302 (450)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCH--------------HHHHHHHHH-SCSCBC--SHHH-H
T ss_pred hhhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCH--------------HHHHHHHHH-hhcCCc--ccHH-H
Confidence 33221111 112 3799999999999988866 55555553 344444332 222221 1122 2
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC----Cceeee
Q 018318 298 ALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK----GYSLVT 338 (358)
Q Consensus 298 al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----G~~~~~ 338 (358)
.++.++..+..+++.+.+++..++++++++.|+++ |+++..
T Consensus 303 ~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~ 347 (450)
T 3bc8_A 303 DVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ 347 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecC
Confidence 34555555444566777788889999999998763 676664
No 167
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.79 E-value=9.2e-19 Score=167.51 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccc
Q 018318 73 EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI 152 (358)
Q Consensus 73 ~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~ 152 (358)
+...+++ +++++++|.+. .+++++|++|+..++.+++++||+|++..++|++...... ..+...|.
T Consensus 58 ~~~~~l~----~~la~~~g~~~-----~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~-----~~~~~~g~ 123 (421)
T 2ctz_A 58 PTVDVLE----KRLAALEGGKA-----ALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFK-----VTLKRLGI 123 (421)
T ss_dssp HHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHH-----THHHHTTC
T ss_pred hHHHHHH----HHHHHHhCCCc-----eEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH-----HHHHHcCC
Confidence 4555565 78999999874 3678889999999999999999999999998876542110 00123454
Q ss_pred eeEEeec-ccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechh-hhhhhhcccc
Q 018318 153 YFESLPY-KVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAH-ISGLVAAQEA 228 (358)
Q Consensus 153 ~~~~~~~-~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~-~~g~~~~~~~ 228 (358)
+++.+ +. .|++++++++++ ++++|++++++|+ ...|+++|.++|++||+++|+|++| +.|...
T Consensus 124 --~~~~~~~~------~d~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~---- 190 (421)
T 2ctz_A 124 --EVRFTSRE------ERPEEFLALTDE-KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLL---- 190 (421)
T ss_dssp --EEEECCTT------CCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSC----
T ss_pred --EEEEECCC------CCHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccC----
Confidence 44444 43 289999999975 7899988877654 6789999999999999999999999 776421
Q ss_pred CCCCC-cccEEEecCCccCCCCC---eeEEEE
Q 018318 229 ANPFE-YCHIVTTTTHKSLRGPR---AGMIFY 256 (358)
Q Consensus 229 ~~~~~-~~d~~~~s~~K~l~g~~---gG~i~~ 256 (358)
.++. ++|++++|+||++++|. ||+++.
T Consensus 191 -~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 191 -RPLAWGAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp -CGGGGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred -CccccCCeEEEECCcccccCCCCcEEEEEEe
Confidence 2234 78999999999997654 455554
No 168
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.79 E-value=9.2e-19 Score=169.43 Aligned_cols=240 Identities=15% Similarity=0.163 Sum_probs=148.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcC----CCCe---EEEecCCC-CccccccccccCC
Q 018318 73 EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE----PHDR---IMGLDLPS-GGHLTHGYYTSGG 144 (358)
Q Consensus 73 ~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~----~gd~---Vl~~~~~~-~~~~~~~~~~~~~ 144 (358)
+...+++ +++++++|.+. .+++++|++|+..++.++++ +||+ |++. ..| +...
T Consensus 76 ~~~~~l~----~~la~~~~~~~-----v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~-~~~~~~~~--------- 136 (467)
T 1ax4_A 76 RNYYDLK----DKAKELFNYDY-----IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS-NFHFDTTA--------- 136 (467)
T ss_dssp HHHHHHH----HHHHHHHCCCE-----EEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEE-SSCCHHHH---------
T ss_pred ccHHHHH----HHHHHHcCCCc-----EEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEe-ccccchhh---------
Confidence 4445555 78899998753 35567788999999999988 9998 8887 333 2111
Q ss_pred cccccccceeEEeecc--cCC-----CCCCCCHHHHHHHHhhc---CCcEEEEcCCCCCC---c---cchHHHHHHHHHh
Q 018318 145 KKISATSIYFESLPYK--VNS-----STGYIDYDKLEEKALDF---RPKLIICGGSAYPR---D---WDYARFRAVADKC 208 (358)
Q Consensus 145 ~~~~~~g~~~~~~~~~--~~~-----~~~~id~~~l~~~l~~~---~~~~v~~~~~~~~~---~---~~l~~i~~la~~~ 208 (358)
..+...|.....++.+ ++. .++.+|+++|+++++++ ++++|++++++|+. + .++++|.++|++|
T Consensus 137 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~ 216 (467)
T 1ax4_A 137 AHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH 216 (467)
T ss_dssp HHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH
T ss_pred HHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHc
Confidence 0123344433222211 111 13578999999999753 57888887665442 2 3578999999999
Q ss_pred CCEEEEechhhh-hhhhc-----cccCCCC--------CcccEEEecCCccCCCCCeeEEEEe-C-CCCCCCCCCCCCcc
Q 018318 209 GALLLCDMAHIS-GLVAA-----QEAANPF--------EYCHIVTTTTHKSLRGPRAGMIFYR-K-GPKPPKKGQPEGAV 272 (358)
Q Consensus 209 g~~lvvD~a~~~-g~~~~-----~~~~~~~--------~~~d~~~~s~~K~l~g~~gG~i~~~-~-~~~~~~~~~~~~~~ 272 (358)
|+++|+|++|+. |.... +....++ ..+|++++|+||+++.|.||+++.+ + +
T Consensus 217 gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~Gg~~~~~d~~~------------- 283 (467)
T 1ax4_A 217 GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEE------------- 283 (467)
T ss_dssp TCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHH-------------
T ss_pred CCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcceEEEeCCHHH-------------
Confidence 999999999876 32200 0011111 2478999999999865557888877 3 3
Q ss_pred ccHHHHhhhhc--CCC--CcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEE
Q 018318 273 YDFEDKINFAV--FPS--LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLW 348 (358)
Q Consensus 273 ~~~~~~~~~~~--~~~--~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v 348 (358)
+.+.+.... ..+ ..++.....+++++.++..... ++..++..++++++.+.|.+.|+++.. +..++.+|+
T Consensus 284 --l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~ 357 (467)
T 1ax4_A 284 --IFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLREAGIPIQY-PTGGHAVFV 357 (467)
T ss_dssp --HHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCBCS-SCCSSEEEE
T ss_pred --HHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHhCCCCccc-CCCceEEEE
Confidence 222222110 011 1122233333444445555432 123444557788999999888888764 456788999
Q ss_pred Ec
Q 018318 349 DL 350 (358)
Q Consensus 349 ~~ 350 (358)
++
T Consensus 358 ~~ 359 (467)
T 1ax4_A 358 DC 359 (467)
T ss_dssp ES
T ss_pred eh
Confidence 83
No 169
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.79 E-value=2.3e-18 Score=162.67 Aligned_cols=212 Identities=19% Similarity=0.172 Sum_probs=143.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccc
Q 018318 73 EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI 152 (358)
Q Consensus 73 ~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~ 152 (358)
+...+++ +++++++|.+. .+++++|++|+..++.+++++||+|++..++|++.+.... ......|.
T Consensus 52 ~~~~~l~----~~la~~~~~~~-----~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~-----~~~~~~g~ 117 (386)
T 1cs1_A 52 PTRDVVQ----RALAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFD-----SLAKRGCY 117 (386)
T ss_dssp HHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----HHHTTTSC
T ss_pred ccHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHH-----HHHHhcCC
Confidence 4444554 78999999873 3667889999999999999999999999998876431100 00123454
Q ss_pred eeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCC
Q 018318 153 YFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAAN 230 (358)
Q Consensus 153 ~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~ 230 (358)
.++.++. .|++++++++++ ++++|++++++++ ...|+++|.++|++||+++|+|++|+.+... .
T Consensus 118 --~~~~~~~------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~-----~ 183 (386)
T 1cs1_A 118 --RVLFVDQ------GDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQ-----N 183 (386)
T ss_dssp --EEEEECT------TCHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-----C
T ss_pred --EEEEeCC------CCHHHHHHhhcc-CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-----C
Confidence 3444432 389999999975 7899988877665 5779999999999999999999998765432 1
Q ss_pred CCC-cccEEEecCCccCCCCC---eeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHh
Q 018318 231 PFE-YCHIVTTTTHKSLRGPR---AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQA 306 (358)
Q Consensus 231 ~~~-~~d~~~~s~~K~l~g~~---gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~ 306 (358)
++. ++|++++|+||++++|. ||+++++++ ++.+.+....... .++.+....++ ++..+
T Consensus 184 ~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~--------------~l~~~l~~~~~~~-~~~~~~~~~~~---~~~~l 245 (386)
T 1cs1_A 184 PLALGADLVLHSCTKYLNGHSDVVAGVVIAKDP--------------DVVTELAWWANNI-GVTGGAFDSYL---LLRGL 245 (386)
T ss_dssp GGGGTCSEEEEETTTTTTCSSCCCCEEEEESSH--------------HHHHHHHHHHHHH-TCBCCHHHHHH---HHHHH
T ss_pred ccccCceEEEEcCcccccCCCCceeEEEEeCcH--------------HHHHHHHHHHHhc-CCCCCHHHHHH---HHhcc
Confidence 233 78999999999987664 389988763 3444444322111 11122222111 22222
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhC
Q 018318 307 STPAFKAYAKQVKANAVALGNYLTGK 332 (358)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (358)
. .+..+.++..++++++.+.|+++
T Consensus 246 ~--~~~~~~~~~~~~~~~l~~~l~~~ 269 (386)
T 1cs1_A 246 R--TLVPRMELAQRNAQAIVKYLQTQ 269 (386)
T ss_dssp T--THHHHHHHHHHHHHHHHHHHTTC
T ss_pred c--HHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 23456677888899999998876
No 170
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.67 E-value=4.8e-21 Score=181.41 Aligned_cols=281 Identities=13% Similarity=0.103 Sum_probs=173.4
Q ss_pred cceeEeccCC--CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC--CCCCCCCccccccCCh
Q 018318 32 RGIELIASEN--FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH--LDPTQWGVNVQPYSGS 107 (358)
Q Consensus 32 ~~~~l~a~~~--~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g--~~~~~~~~~v~~~sGt 107 (358)
+.+.|..+.. ..++.+.+++.+.+.... .+|+. . ..++++.+.+++++.+| ++.++ .+++++|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~-------~-~~~l~~~la~~l~~~~g~~~~~~~---v~~~~g~~ 99 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLV-YGYTY-------A-SDELLQAVLDWEKSEHQYSFDKED---IVFVEGVV 99 (392)
Confidence 3455655443 247889998887764321 12321 1 33555555567776777 44431 24445567
Q ss_pred HHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCC--CCCCCHHHHHHHHhhcCCcEE
Q 018318 108 PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS--TGYIDYDKLEEKALDFRPKLI 185 (358)
Q Consensus 108 ~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~id~~~l~~~l~~~~~~~v 185 (358)
+|+..++.+++++||+|++..+.|.++.. .+...|.. ++.++.+.+ ++.+|++++++++++.++++|
T Consensus 100 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g~~--~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v 168 (392)
T 3b1d_A 100 PAISIAIQAFTKEGEAVLINSPVYPPFAR---------SVRLNNRK--LVSNSLKEENGLFQIDFEQLENDIVENDVKLY 168 (392)
Confidence 89999999999999999999988776431 22344543 344444212 245899999999874578888
Q ss_pred EEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC-------CcccEEEecCCccC--CCCCe
Q 018318 186 ICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF-------EYCHIVTTTTHKSL--RGPRA 251 (358)
Q Consensus 186 ~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~-------~~~d~~~~s~~K~l--~g~~g 251 (358)
++++++|+ ... ++++|.++|++||+++|+|++|+. +...+....++ .+.++++.|++|++ +|.+.
T Consensus 169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 247 (392)
T 3b1d_A 169 LLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQD-LTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKN 247 (392)
Confidence 87777665 333 489999999999999999999764 33222111111 12358899999997 46677
Q ss_pred eEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 018318 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (358)
Q Consensus 252 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 331 (358)
|+++++++ ++.+.+.........++++....++..++++.. ...+++..++..++++++.+.|++
T Consensus 248 G~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~ 312 (392)
T 3b1d_A 248 SYAIIENP--------------TLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG-KPWLVALKAVLEENIQFAVEYFAQ 312 (392)
Confidence 99988753 233333332222111122223333333444421 223466677788889999999987
Q ss_pred -C-CceeeeCCCcceEEEEEcCC
Q 018318 332 -K-GYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 332 -~-G~~~~~~~~~~~~~~v~~~~ 352 (358)
. |+++.. +..+..+|+++..
T Consensus 313 ~~~~~~~~~-~~~~~~~~i~~~~ 334 (392)
T 3b1d_A 313 EAPRLKVMK-PQGTYLIWLDFSD 334 (392)
Confidence 4 787764 4566677887753
No 171
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.79 E-value=1e-17 Score=159.02 Aligned_cols=274 Identities=14% Similarity=0.110 Sum_probs=160.5
Q ss_pred cceeEeccCC--CCCHHHHHHHhcccccCC----CCCCCCCCCCCCchhHHHHHHHHHHHHHHh--cC-CCCCCCCcccc
Q 018318 32 RGIELIASEN--FTSFAVIEALGSALTNKY----SEGMPGNRYYGGNEFIDEIENLCRSRALQT--FH-LDPTQWGVNVQ 102 (358)
Q Consensus 32 ~~~~l~a~~~--~~~~~V~~a~~~~~~~~~----~~g~~~~~~~~~~~~~~~le~~~~~~la~~--~g-~~~~~~~~~v~ 102 (358)
+.+.+..+.+ .++|.|.+++.+.+.... ..+|+. .....+++ +.++++ +| ++++ .|+
T Consensus 34 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~------~~g~~~lr----~~la~~l~~g~~~~~----~v~ 99 (400)
T 3asa_A 34 TVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGP------DFGLPALR----QKLSEDFYRGFVDAK----EIF 99 (400)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCC------TTCCHHHH----HHHHHTTSTTSSCGG----GEE
T ss_pred ceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCC------CCCCHHHH----HHHHHHHHcCCCCHH----HEE
Confidence 4566665544 358899999887664311 012211 12233454 667777 57 5543 355
Q ss_pred ccCC-hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccce-eEEeecccCCC-CCCCCHHHHHHHHhh
Q 018318 103 PYSG-SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIY-FESLPYKVNSS-TGYIDYDKLEEKALD 179 (358)
Q Consensus 103 ~~sG-t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~-~~~id~~~l~~~l~~ 179 (358)
+++| ++++..++ .++++||+|++..|.|.++.. .+...|.. +..++. +.+ ....|+++ +
T Consensus 100 ~~~G~~~al~~~~-~~~~~gd~Vl~~~p~y~~~~~---------~~~~~g~~~~~~~~~--~~~~~~~~~l~~----~-- 161 (400)
T 3asa_A 100 ISDGAKVDLFRLL-SFFGPNQTVAIQDPSYPAYLD---------IARLTGAKEIIALPC--LQENAFFPEFPE----D-- 161 (400)
T ss_dssp EESCHHHHHHHHH-HHHCSSCEEEEEESCCHHHHH---------HHHHTTCSEEEEEEC--CGGGTTCCCCCT----T--
T ss_pred EccChHHHHHHHH-HHcCCCCEEEECCCCcHHHHH---------HHHHcCCcceEeccc--chhcCcccChhh----c--
Confidence 5666 56777654 556899999999998876431 22345654 443433 311 22344322 1
Q ss_pred cCCcEEEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C---cccEEEecCCccC--
Q 018318 180 FRPKLIICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E---YCHIVTTTTHKSL-- 246 (358)
Q Consensus 180 ~~~~~v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~---~~d~~~~s~~K~l-- 246 (358)
.++++|++++++|| ...+ +++|.++|+++|+++|+|++|+ ++...+..+.++ + +.+++++|++|++
T Consensus 162 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 240 (400)
T 3asa_A 162 THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYS-TFISDPSLPKSIFEIPDARFCAIEINSFSKPLGF 240 (400)
T ss_dssp CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTG-GGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTT
T ss_pred cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhh-hhhcCCCCCCchhhCCCCCCceEEEecchhhcCC
Confidence 36888888777776 3444 6789999999999999999976 232222111122 2 2348899999987
Q ss_pred CCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 018318 247 RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALG 326 (358)
Q Consensus 247 ~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~ 326 (358)
+|.+.|+++++++..... +. .+........ ....++.+....+++..++... .++...+++.++++++.
T Consensus 241 ~GlriG~~~~~~~~~~~~--~~-----~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l~ 309 (400)
T 3asa_A 241 AGIRLGWTVIPQELTYAD--GH-----FVIQDWERFL-STTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLLR 309 (400)
T ss_dssp TTCCCEEEECCTTCBCTT--SC-----BHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHH
T ss_pred cchheeEEeeChhhccch--hh-----hHHHHHHHHh-ccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHH
Confidence 456679999887521000 00 0221111110 0011223444444444555432 23566778888999999
Q ss_pred HHHhhCCceeeeCCCcceEEEEE-c
Q 018318 327 NYLTGKGYSLVTGGTENHLVLWD-L 350 (358)
Q Consensus 327 ~~L~~~G~~~~~~~~~~~~~~v~-~ 350 (358)
+.|++.|+++.. +..++.+|++ +
T Consensus 310 ~~L~~~g~~~~~-~~~~~~~~~~~~ 333 (400)
T 3asa_A 310 KALLATGFEVFG-GEHAPYLWVKPT 333 (400)
T ss_dssp HHHHHTTCEEEE-CSSSSEEEEECC
T ss_pred HHHHHCCCeeeC-CCCceEEEEecc
Confidence 999998998875 3456778998 5
No 172
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.79 E-value=7e-19 Score=166.44 Aligned_cols=307 Identities=13% Similarity=0.092 Sum_probs=171.8
Q ss_pred ccccchHHHHHHHHHHHHhh--cceeEeccC----C---CCCHHHHHHHhc-ccccCCCCCCCCCCCCCCchhHHHHHHH
Q 018318 12 LETVDPEIHDLIEKEKRRQC--RGIELIASE----N---FTSFAVIEALGS-ALTNKYSEGMPGNRYYGGNEFIDEIENL 81 (358)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~--~~~~l~a~~----~---~~~~~V~~a~~~-~~~~~~~~g~~~~~~~~~~~~~~~le~~ 81 (358)
+...+++.+..+.+...... +.+.+..+. + ++++.|.+++.+ .+......+|+.. ....++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~------~g~~~lr~~ 78 (397)
T 3fsl_A 5 VDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPM------EGLNCYRHA 78 (397)
T ss_dssp CCCCCCCHHHHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCT------TCCHHHHHH
T ss_pred CCCCCCCchhhHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCC------CchHHHHHH
Confidence 44455665555544434332 356666552 2 234899999987 6653222233321 112344433
Q ss_pred HHHHHHHhcCC--CCCCCCccccccCChHHHHHHH--HhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEe
Q 018318 82 CRSRALQTFHL--DPTQWGVNVQPYSGSPANFAAY--TAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESL 157 (358)
Q Consensus 82 ~~~~la~~~g~--~~~~~~~~v~~~sGt~a~~~~l--~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 157 (358)
+.+++....+. +++.+ ..+++++|++|+..++ .+++++||+|++..|.|.++.. .+...|..+..+
T Consensus 79 la~~~~~~~~~~~~~~~~-~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g~~~~~~ 148 (397)
T 3fsl_A 79 IAPLLFGADHPVLKQQRV-ATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVA---------IFAGAGFEVSTY 148 (397)
T ss_dssp HHHHHHCTTCHHHHTTCE-EEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHH---------HHHHTTCCEEEE
T ss_pred HHHHHhcCCcccccccce-EEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHH---------HHHHcCCceEEE
Confidence 33444333221 22200 0244455677998884 4568999999999988876431 234456544444
Q ss_pred ecccCCCCCCCCHHHHHHHHhhc--CCcEEEEcCCCCC--Cc---cchHHHHHHHHHhCCEEEEechhhhhhhhcc-ccC
Q 018318 158 PYKVNSSTGYIDYDKLEEKALDF--RPKLIICGGSAYP--RD---WDYARFRAVADKCGALLLCDMAHISGLVAAQ-EAA 229 (358)
Q Consensus 158 ~~~~~~~~~~id~~~l~~~l~~~--~~~~v~~~~~~~~--~~---~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~-~~~ 229 (358)
++. +++++.+|+++++++++++ +++++++++++|| .. .++++|.++|++||+++|+|++|+ ++...+ ...
T Consensus 149 ~~~-~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~ 226 (397)
T 3fsl_A 149 PWY-DEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQ-GFGAGMEEDA 226 (397)
T ss_dssp CCE-ETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TSSSCTTGGG
T ss_pred eee-eccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCch-hhccCccccc
Confidence 332 1236789999999999753 4567777777766 33 357799999999999999999975 333211 000
Q ss_pred CCC------CcccEEEecCCccCC--CCCeeEEEEeCCCCCCCCCCCCCccccHHHHh----hhhcCCCCcCCCChhHHH
Q 018318 230 NPF------EYCHIVTTTTHKSLR--GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKI----NFAVFPSLQGGPHNHQIG 297 (358)
Q Consensus 230 ~~~------~~~d~~~~s~~K~l~--g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 297 (358)
.++ ....+++.|++|+++ |.+.|+++..... .++.+.+ ........ ++++.....
T Consensus 227 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 293 (397)
T 3fsl_A 227 YAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCED------------AEAAGRVLGQLKATVRRNY-SSPPNFGAQ 293 (397)
T ss_dssp HHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSS------------HHHHHHHHHHHHHHHHTTT-SSCCSHHHH
T ss_pred HHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCC------------HHHHHHHHHHHHHHHHhcc-CCCCHHHHH
Confidence 011 134588899999874 5566998764310 0222221 11111111 122222222
Q ss_pred HHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHhhC----CceeeeCCCcceEEEEEc
Q 018318 298 ALAVALKQA-----STPAFKAYAKQVKANAVALGNYLTGK----GYSLVTGGTENHLVLWDL 350 (358)
Q Consensus 298 al~~al~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~----G~~~~~~~~~~~~~~v~~ 350 (358)
++..++... .....+..++++.++++++.+.|++. |+++.. +..+..+|+++
T Consensus 294 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~ 354 (397)
T 3fsl_A 294 VVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLL-NQRGMFSYTGL 354 (397)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHH-HCCSSEEECCC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeec-CCceEEEecCC
Confidence 222222210 01234677788899999999999886 676654 34556677665
No 173
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.79 E-value=2.3e-18 Score=163.28 Aligned_cols=206 Identities=15% Similarity=0.152 Sum_probs=138.8
Q ss_pred HHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeeccc
Q 018318 82 CRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKV 161 (358)
Q Consensus 82 ~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 161 (358)
.++++++++|.+. .+++++|++|+..++. ++++||+|++..+.|++.+... . ..++..|.. ++.++.
T Consensus 60 lr~~la~~~g~~~-----~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~--~---~~~~~~G~~--v~~v~~ 126 (393)
T 1n8p_A 60 LERAVAALENAQY-----GLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYF--T---KVANAHGVE--TSFTND 126 (393)
T ss_dssp HHHHHHHHTTCSE-----EEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHH--H---HTSTTTCSC--CEEESS
T ss_pred HHHHHHHHhCCCc-----EEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHH--H---HHHHHcCcE--EEEeCC
Confidence 3488999999874 3778899999999999 8999999999999887543210 0 012334543 334432
Q ss_pred CCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHHh----CCEEEEechhhhhhhhccccCCCCC-c
Q 018318 162 NSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADKC----GALLLCDMAHISGLVAAQEAANPFE-Y 234 (358)
Q Consensus 162 ~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~----g~~lvvD~a~~~g~~~~~~~~~~~~-~ 234 (358)
+ | +++++++++ ++++|++++++|+ ...|+++|.++|++| |+++|+|++|+.+... .++. +
T Consensus 127 ~------d-~~l~~~i~~-~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-----~~~~~~ 193 (393)
T 1n8p_A 127 L------L-NDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-----NPLNFG 193 (393)
T ss_dssp H------H-HHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----CGGGGT
T ss_pred C------h-HHHHHhccc-CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-----CHHHcC
Confidence 1 6 889998864 6889988877665 678999999999999 9999999999876532 2233 7
Q ss_pred ccEEEecCCccCCCCC---eeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHH
Q 018318 235 CHIVTTTTHKSLRGPR---AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAF 311 (358)
Q Consensus 235 ~d~~~~s~~K~l~g~~---gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~ 311 (358)
+|++++|+||+++++. ||+++++++ ++.+.+....... .++......+ .++..+. .+
T Consensus 194 ~di~~~S~sK~~g~~G~rigG~~~~~~~--------------~~~~~l~~~~~~~-g~~~~~~~~~---~~~~~l~--~~ 253 (393)
T 1n8p_A 194 ADIVVHSATKYINGHSDVVLGVLATNNK--------------PLYERLQFLQNAI-GAIPSPFDAW---LTHRGLK--TL 253 (393)
T ss_dssp CSEEEEETTTTTTCSSCCCCEEEEESCH--------------HHHHHHHHHHHHH-CCCCCHHHHH---HHHHHHT--TH
T ss_pred CeEEEEECcccccCCCCceeEEEEeCCH--------------HHHHHHHHHHHhc-CCCCCHHHHH---HHHhccc--hH
Confidence 8999999999886432 488888543 3444443321110 1111211111 1222221 24
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC
Q 018318 312 KAYAKQVKANAVALGNYLTGKG 333 (358)
Q Consensus 312 ~~~~~~~~~~~~~l~~~L~~~G 333 (358)
..+.++..++++++++.|.+.+
T Consensus 254 ~~~~~~~~~~~~~l~~~L~~~~ 275 (393)
T 1n8p_A 254 HLRVRQAALSANKIAEFLAADK 275 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 5667778889999999998874
No 174
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.79 E-value=1.1e-18 Score=166.08 Aligned_cols=306 Identities=13% Similarity=0.133 Sum_probs=175.8
Q ss_pred cccccccchHHHHHHHHHHHHh--hcceeEeccC----C---CCCHHHHHHHhc-ccccCCCCCCCCCCCCCCchhHHHH
Q 018318 9 NSSLETVDPEIHDLIEKEKRRQ--CRGIELIASE----N---FTSFAVIEALGS-ALTNKYSEGMPGNRYYGGNEFIDEI 78 (358)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~a~~----~---~~~~~V~~a~~~-~~~~~~~~g~~~~~~~~~~~~~~~l 78 (358)
++++..++++.+..+.+..... .+.+.|..+. + ++++.|.+++.+ .+......+|.. .....++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~------~~g~~~l 78 (412)
T 1yaa_A 5 FNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLG------ITGLPSL 78 (412)
T ss_dssp TTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCC------TTCCHHH
T ss_pred hccCcccCCCcHHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCC------CCCcHHH
Confidence 3556666666555555443432 3456666543 1 467999999987 654211112221 1223345
Q ss_pred HHHHHHHHHHhcC--CCCCCCCcccc--ccCChHHHHHH--HHhhcCCCCeEEEecCCCCccccccccccCCcccccccc
Q 018318 79 ENLCRSRALQTFH--LDPTQWGVNVQ--PYSGSPANFAA--YTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI 152 (358)
Q Consensus 79 e~~~~~~la~~~g--~~~~~~~~~v~--~~sGt~a~~~~--l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~ 152 (358)
.+.+.+++...+| +++++ .++ +++|++|+..+ +...+.|||+|++..|.|.++.. .+...|.
T Consensus 79 r~~ia~~~~~~~~~~~~~~~---i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~---------~~~~~g~ 146 (412)
T 1yaa_A 79 TSNAAKIIFGTQSDALQEDR---VISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMA---------IFENQGL 146 (412)
T ss_dssp HHHHHHHHHCTTCHHHHTTC---EEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHH---------HHHTTTC
T ss_pred HHHHHHHHhcCCCCCCCcce---EEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHH---------HHHHcCc
Confidence 4333344433333 12322 244 55667788887 34456799999999998876531 2334565
Q ss_pred eeEEeecccCCCCCCCCHHHHHHHHhhcC-CcEE-EEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhc
Q 018318 153 YFESLPYKVNSSTGYIDYDKLEEKALDFR-PKLI-ICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAA 225 (358)
Q Consensus 153 ~~~~~~~~~~~~~~~id~~~l~~~l~~~~-~~~v-~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~ 225 (358)
.+..++.. +++++.+|++++++++++.+ .+++ ++++++|| ... ++++|.++|++||+++|+|++|. ++.+.
T Consensus 147 ~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~ 224 (412)
T 1yaa_A 147 KTATYPYW-ANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQ-GFATG 224 (412)
T ss_dssp CEEEEECE-ETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTSSS
T ss_pred eEEEEeee-cCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccc-cccCC
Confidence 44444331 32357899999999997643 2444 44777776 333 47789999999999999999974 33221
Q ss_pred c---cc-CC-CCC--c----ccEEEecCCccCC--CCCeeEEE--E----eCCCCCCCCCCCCCcccc----HHHHhhhh
Q 018318 226 Q---EA-AN-PFE--Y----CHIVTTTTHKSLR--GPRAGMIF--Y----RKGPKPPKKGQPEGAVYD----FEDKINFA 282 (358)
Q Consensus 226 ~---~~-~~-~~~--~----~d~~~~s~~K~l~--g~~gG~i~--~----~~~~~~~~~~~~~~~~~~----~~~~~~~~ 282 (358)
+ .. +. .+. + .++++.|+||+++ |.+.|+++ + +++ + +.+.+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~--------------~~~~~l~~~l~~~ 290 (412)
T 1yaa_A 225 DLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNK--------------TIKPAVTSQLAKI 290 (412)
T ss_dssp CHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHH--------------HHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCH--------------HHHHHHHHHHHHH
Confidence 1 00 00 111 2 3578999999874 34559887 6 122 3 44444432
Q ss_pred cCCCCcCCCChhHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHHHhhCC----ceeeeCCCcceEEEEEc
Q 018318 283 VFPSLQGGPHNHQIGALAVALKQAS-----TPAFKAYAKQVKANAVALGNYLTGKG----YSLVTGGTENHLVLWDL 350 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~al~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~G----~~~~~~~~~~~~~~v~~ 350 (358)
.... ..+++....+++..++.... ...++...+++.++++++.+.|++.| +++.. +..+..+|+.+
T Consensus 291 ~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~ 365 (412)
T 1yaa_A 291 IRSE-VSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIV-NQCGMFSFTGL 365 (412)
T ss_dssp HHTT-TSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHH-HCCSSEEECCC
T ss_pred Hhhc-cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeec-cCceEEEeeCC
Confidence 1111 12334344444444444321 12356777888889999999998876 77654 34455566543
No 175
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.78 E-value=7.5e-19 Score=165.15 Aligned_cols=231 Identities=11% Similarity=0.060 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCC----CCeEEEecCCCCccccccccccCCcccccccce
Q 018318 78 IENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEP----HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIY 153 (358)
Q Consensus 78 le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~----gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 153 (358)
-|..+.+|++.+ |.+... .++.+..+|.++++++.+.+++ ||+|+++...|-+.+ +.+.+.|..
T Consensus 118 tn~l~ld~L~~~-G~~~~~--~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~---------kAliL~Gl~ 185 (501)
T 3hl2_A 118 TNSLVLDIIKLA-GVHTVA--NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF---------KSMITAGFE 185 (501)
T ss_dssp HHHHHHHHHHHT-TCTTCC--EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH---------HHHHHTTCE
T ss_pred HHHHHHHHHHHc-CCCCCC--cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHH---------HHHHHcCCe
Confidence 455566888877 998631 2343344455666666666653 499999998776654 245567876
Q ss_pred eEEeecccCCCCCCCCHHHHHHHHhhcCCc--EEE-EcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhcccc
Q 018318 154 FESLPYKVNSSTGYIDYDKLEEKALDFRPK--LII-CGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEA 228 (358)
Q Consensus 154 ~~~~~~~~~~~~~~id~~~l~~~l~~~~~~--~v~-~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~ 228 (358)
..+++..++.+...+|+++++++|+++.++ +++ ...+.|+ ...||++|+++||+||++++||+||+..+.....+
T Consensus 186 Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~l 265 (501)
T 3hl2_A 186 PVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHL 265 (501)
T ss_dssp EEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHH
T ss_pred EEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhh
Confidence 555554444345689999999999886433 223 3344453 45799999999999999999999987654332222
Q ss_pred C-CCCC-c-ccEEEecCCccCCCCCeeEEE-EeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHH
Q 018318 229 A-NPFE-Y-CHIVTTTTHKSLRGPRAGMIF-YRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALK 304 (358)
Q Consensus 229 ~-~~~~-~-~d~~~~s~~K~l~g~~gG~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~ 304 (358)
+ ..++ + +|+++.|+||++..|-||.++ .+++ ++.+.+.. .+|+..+ ....+.+..++.
T Consensus 266 p~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~--------------e~l~~~~~-~yPGr~S---~Spsldl~~tLL 327 (501)
T 3hl2_A 266 IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND--------------SFIQEISK-MYPGRAS---ASPSLDVLITLL 327 (501)
T ss_dssp HHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCH--------------HHHHHHHH-TSCSCBC---SHHHHHHHHHHH
T ss_pred HHHHHhcCCCcEEEecccccceeecCceEEEeCCH--------------HHHHHHHH-hCCCCCC---CcHHHHHHHHHH
Confidence 1 1123 5 999999999998777665554 5553 45554433 2344332 222334566666
Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhhC----Cceeee
Q 018318 305 QASTPAFKAYAKQVKANAVALGNYLTGK----GYSLVT 338 (358)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~----G~~~~~ 338 (358)
.+..+++.+.+++..+++++|++.|++. |-++..
T Consensus 328 ~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~ 365 (501)
T 3hl2_A 328 SLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLH 365 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcC
Confidence 6666788999999999999999999884 555553
No 176
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.78 E-value=6.1e-18 Score=156.60 Aligned_cols=258 Identities=13% Similarity=0.078 Sum_probs=167.1
Q ss_pred cceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC---CCCCCCCccccccCC
Q 018318 32 RGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH---LDPTQWGVNVQPYSG 106 (358)
Q Consensus 32 ~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g---~~~~~~~~~v~~~sG 106 (358)
+.+.|..+.+. +++.|.+++.+.+......+|+. ....+++ +.++++++ ++++ .|++++|
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-------~~~~~lr----~~la~~~~~~~~~~~----~v~~~~G 84 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYD-------SPDEELI----EKILSYLDTDFLSKN----NVSVGNG 84 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCC-------SSCHHHH----HHHHHHHTCSSCCGG----GEEEESS
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-------CchHHHH----HHHHHHcCCCCCCHH----HEEEcCC
Confidence 45777766553 58999999988763211112321 1123444 77888888 6653 3445555
Q ss_pred -hHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEE
Q 018318 107 -SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185 (358)
Q Consensus 107 -t~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v 185 (358)
++++..++.++ ||+|++. |.|.++.. .++..|.. ++.++.+ +++.+|++++ .++++|
T Consensus 85 ~~~al~~~~~~~---gd~Vl~~-p~y~~~~~---------~~~~~g~~--~~~v~~~-~~~~~d~~~l------~~~~~v 142 (335)
T 1uu1_A 85 ADEIIYVMMLMF---DRSVFFP-PTYSCYRI---------FAKAVGAK--FLEVPLT-KDLRIPEVNV------GEGDVV 142 (335)
T ss_dssp HHHHHHHHHHHS---SEEEECS-SSCHHHHH---------HHHHHTCE--EEECCCC-TTSCCCCCCC------CTTEEE
T ss_pred hHHHHHHHHHHh---CCcEEEC-CCcHHHHH---------HHHHcCCe--EEEeccC-CCCCCCHHHc------CCCCEE
Confidence 67888888887 8999999 88865431 22345554 4445544 3457888776 268888
Q ss_pred EEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC--cccEEEecCCccCC--CCCeeEEEEeCC
Q 018318 186 ICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLR--GPRAGMIFYRKG 259 (358)
Q Consensus 186 ~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~--~~d~~~~s~~K~l~--g~~gG~i~~~~~ 259 (358)
++++++|| ...|.+++.++++.+| ++|+|++|+. +...+.. ..++ +.+++++|++|+++ |.+.|++++++
T Consensus 143 ~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~-~~~~~~~-~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~- 218 (335)
T 1uu1_A 143 FIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYE-FHGESYV-DFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE- 218 (335)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHH-HHCCCCG-GGGGTCSSEEEEEESTTTTTCGGGCCEEEEECH-
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchh-hcchhHH-HHhhhCCCEEEEecchhhcCCcccCeEEEEeCH-
Confidence 87777765 5778999999999889 9999999863 2221101 1012 45789999999974 44569999966
Q ss_pred CCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeeeC
Q 018318 260 PKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTG 339 (358)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~ 339 (358)
++.+.+.....++ +++....+++..+++. .+.++...+++.++++++.+.|++.|+++.+
T Consensus 219 --------------~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~- 278 (335)
T 1uu1_A 219 --------------KFIDAYNRVRLPF---NVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRITD- 278 (335)
T ss_dssp --------------HHHHHHHHHSCTT---CSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-
T ss_pred --------------HHHHHHHHhcCCC---CcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCcEEcC-
Confidence 4555555433222 3344444444445543 1235677888999999999999988887653
Q ss_pred CCcceEEEEEcC
Q 018318 340 GTENHLVLWDLR 351 (358)
Q Consensus 340 ~~~~~~~~v~~~ 351 (358)
..+..+|+++.
T Consensus 279 -~~~~~~~~~~~ 289 (335)
T 1uu1_A 279 -SRGNFVFVFME 289 (335)
T ss_dssp -CCSSEEEEECC
T ss_pred -CCCeEEEEECC
Confidence 33456888764
No 177
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.78 E-value=5e-18 Score=161.55 Aligned_cols=305 Identities=12% Similarity=0.060 Sum_probs=179.0
Q ss_pred cccccccchHHHHHHHHHHHHh--hcceeEeccC-------CCCCHHHHHHHhcccccC-CCCCCCCCCCCCCchhHHHH
Q 018318 9 NSSLETVDPEIHDLIEKEKRRQ--CRGIELIASE-------NFTSFAVIEALGSALTNK-YSEGMPGNRYYGGNEFIDEI 78 (358)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~a~~-------~~~~~~V~~a~~~~~~~~-~~~g~~~~~~~~~~~~~~~l 78 (358)
..++..++++.+..+.+..... ++.+.|..+. ..+++.|.+++.+.+... ...+|.. .....++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~------~~g~~~l 79 (412)
T 1ajs_A 6 FAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLP------ILGLAEF 79 (412)
T ss_dssp TTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCC------TTCCHHH
T ss_pred hhhCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCC------CCCCHHH
Confidence 3467777788777666654432 3456666554 245689999987765221 1112321 1222345
Q ss_pred HHHHHHHHHHhc-CC-----CCCCCCcccc--ccCChHHHHHHHH--hhcCCC-----CeEEEecCCCCccccccccccC
Q 018318 79 ENLCRSRALQTF-HL-----DPTQWGVNVQ--PYSGSPANFAAYT--AVLEPH-----DRIMGLDLPSGGHLTHGYYTSG 143 (358)
Q Consensus 79 e~~~~~~la~~~-g~-----~~~~~~~~v~--~~sGt~a~~~~l~--a~~~~g-----d~Vl~~~~~~~~~~~~~~~~~~ 143 (358)
+ +.+++++ +. ++++ .++ +++|++|+..++. .++++| |+|++..|.|.++..
T Consensus 80 r----~~la~~~~~~~~~~~~~~~---v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~------- 145 (412)
T 1ajs_A 80 R----TCASRLALGDDSPALQEKR---VGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNG------- 145 (412)
T ss_dssp H----HHHHHHHHCTTCHHHHTTC---EEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHH-------
T ss_pred H----HHHHHHHhcCCCCccCCCc---EEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHH-------
Confidence 4 5555555 32 3332 244 5667789988854 456899 999999998876531
Q ss_pred Ccccccccce-eEEeecccCCCCCCCCHHHHHHHHhhc--CCcEEEEcCCCCC--Cc---cchHHHHHHHHHhCCEEEEe
Q 018318 144 GKKISATSIY-FESLPYKVNSSTGYIDYDKLEEKALDF--RPKLIICGGSAYP--RD---WDYARFRAVADKCGALLLCD 215 (358)
Q Consensus 144 ~~~~~~~g~~-~~~~~~~~~~~~~~id~~~l~~~l~~~--~~~~v~~~~~~~~--~~---~~l~~i~~la~~~g~~lvvD 215 (358)
.+...|.. +..+++.- ++++.+|+++++++++++ +++++++++++|| .. .++++|.++|++||+++|+|
T Consensus 146 --~~~~~g~~~~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D 222 (412)
T 1ajs_A 146 --VFTTAGFKDIRSYRYWD-TEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFD 222 (412)
T ss_dssp --HHHHTTCSCEEEEECEE-TTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred --HHHHcCCceeEEEeeec-CCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 23345654 44444321 135679999999999764 3456667877776 33 35778999999999999999
Q ss_pred chhhhhhhhcc---cc-C-CCCC---cccEEEecCCccCC--CCCeeEEEE---eCCCCCCCCCCCCCccccHHHHhhhh
Q 018318 216 MAHISGLVAAQ---EA-A-NPFE---YCHIVTTTTHKSLR--GPRAGMIFY---RKGPKPPKKGQPEGAVYDFEDKINFA 282 (358)
Q Consensus 216 ~a~~~g~~~~~---~~-~-~~~~---~~d~~~~s~~K~l~--g~~gG~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (358)
++|. ++...+ .. . ..+. ..++++.|+||.++ |.+.|++++ +++. .. .+.+.+...
T Consensus 223 e~y~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~---------~~--~~~~~~~~~ 290 (412)
T 1ajs_A 223 SAYQ-GFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDS---------IL--RVLSQMQKI 290 (412)
T ss_dssp ESCT-TTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHH---------HH--HHHHHHHHH
T ss_pred cccc-cccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEEecCCHHH---------HH--HHHHHHHHH
Confidence 9954 333221 10 0 0011 22388999999874 345699988 4420 00 133333321
Q ss_pred cCCCCcCCCChhHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHHHhhCC----ceeeeCCCcceEEEEEc
Q 018318 283 VFPSLQGGPHNHQIGALAVALKQAS-----TPAFKAYAKQVKANAVALGNYLTGKG----YSLVTGGTENHLVLWDL 350 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~al~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~G----~~~~~~~~~~~~~~v~~ 350 (358)
.... .++++....+++..+++... ...++...+++.++++++.+.|++.| +++.. +..+..+|+.+
T Consensus 291 ~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~ 365 (412)
T 1ajs_A 291 VRVT-WSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHIT-DQIGMFSFTGL 365 (412)
T ss_dssp HHTT-TSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHH-HCCSSEEECCC
T ss_pred Hhcc-cCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEc-CCCceEEEeCC
Confidence 1111 12233344444445554321 12346777888999999999999876 66654 34455666654
No 178
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.78 E-value=3.9e-18 Score=164.95 Aligned_cols=160 Identities=21% Similarity=0.205 Sum_probs=118.2
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccc
Q 018318 71 GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT 150 (358)
Q Consensus 71 ~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (358)
+.+....+ ++++++++|.+. .+++++|++|+..++. ++++||+|++..+.|+++..... ..+...
T Consensus 131 g~~~~~~l----~~~la~~~g~~~-----~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~-----~~~~~~ 195 (464)
T 1ibj_A 131 GNPTRDAL----ESLLAKLDKADR-----AFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLS-----QVVPRS 195 (464)
T ss_dssp CCHHHHHH----HHHHHHHHTCSE-----EEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHH-----HTSGGG
T ss_pred CCHHHHHH----HHHHHHHhCCCe-----EEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHH-----HHHHHc
Confidence 34444444 488999999863 3667888889887775 78999999999998876531100 012334
Q ss_pred cceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhcccc
Q 018318 151 SIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEA 228 (358)
Q Consensus 151 g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~ 228 (358)
|.. ++.++. .|++++++++++ ++++|++++++|+ ...|+++|+++|++||+++|+|++|+.|...
T Consensus 196 G~~--v~~v~~------~d~~~l~~~i~~-~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~---- 262 (464)
T 1ibj_A 196 GVV--VKRVNT------TKLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS---- 262 (464)
T ss_dssp TCE--EEEECT------TSHHHHHHHCCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC----
T ss_pred CCE--EEEeCC------CCHHHHHHHhcc-CceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccC----
Confidence 543 444432 289999999864 7899999888765 5779999999999999999999999866431
Q ss_pred CCCCC-cccEEEecCCccCCCC---CeeEEEEeCC
Q 018318 229 ANPFE-YCHIVTTTTHKSLRGP---RAGMIFYRKG 259 (358)
Q Consensus 229 ~~~~~-~~d~~~~s~~K~l~g~---~gG~i~~~~~ 259 (358)
.+++ ++|++++|+||+++|+ ++|+++++++
T Consensus 263 -~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~ 296 (464)
T 1ibj_A 263 -RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 296 (464)
T ss_dssp -CGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSH
T ss_pred -ChhhcCCEEEEECCcccccCCCCCcEEEEEEChH
Confidence 2233 7899999999998765 5699999863
No 179
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.77 E-value=1.7e-17 Score=158.49 Aligned_cols=299 Identities=14% Similarity=0.077 Sum_probs=171.0
Q ss_pred ccccccchHHHHHHHHHHHHhhcceeEeccCCC-----CCHHHHHHHh--cccccCC-CCCCCCCCCCCCchhHHHHHHH
Q 018318 10 SSLETVDPEIHDLIEKEKRRQCRGIELIASENF-----TSFAVIEALG--SALTNKY-SEGMPGNRYYGGNEFIDEIENL 81 (358)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~-----~~~~V~~a~~--~~~~~~~-~~g~~~~~~~~~~~~~~~le~~ 81 (358)
..+.+++++....+.+.+. ....+.|..+... +++.+.+++. +.+.... ..+|+ ...+...+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp-----~~~~g~~~lr-- 76 (423)
T 3ez1_A 5 EASRPALDLARQAYEAFKA-RGLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYP-----GGVAGLPSAR-- 76 (423)
T ss_dssp -CCHHHHHHHHHHHHHHHH-HTCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSC-----SCTTCCHHHH--
T ss_pred HHHHHHHHHHHHHHHHhhc-CCceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCC-----CCCCChHHHH--
Confidence 4555666666666665533 2345666655333 4567888875 3332110 12231 1112233444
Q ss_pred HHHHHHHhcCCCCCCCCccccccC-ChHHHH--HHHHhhcC--C---------CCeEEEecCCCCccccccccccCCccc
Q 018318 82 CRSRALQTFHLDPTQWGVNVQPYS-GSPANF--AAYTAVLE--P---------HDRIMGLDLPSGGHLTHGYYTSGGKKI 147 (358)
Q Consensus 82 ~~~~la~~~g~~~~~~~~~v~~~s-Gt~a~~--~~l~a~~~--~---------gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 147 (358)
+.++++++++++ .|++++ +++++. .++.++++ | ||+|++..|.|.++.. .+
T Consensus 77 --~~ia~~~~~~~~----~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~---------~~ 141 (423)
T 3ez1_A 77 --ALFAGYLDVKAE----NVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFL---------LL 141 (423)
T ss_dssp --HHHHHHTTSCGG----GEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHH---------HH
T ss_pred --HHHHHHhCCChh----hEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHH---------HH
Confidence 788899998864 244455 556887 78888877 8 5999999998865431 23
Q ss_pred ccccceeEEeecccCCCCCCCCHHHHHHHHh-hcCCcEEEE-cCCCCC--Cccch---HHHHHHH-HHhCCEEEEechhh
Q 018318 148 SATSIYFESLPYKVNSSTGYIDYDKLEEKAL-DFRPKLIIC-GGSAYP--RDWDY---ARFRAVA-DKCGALLLCDMAHI 219 (358)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~-~~~~~~v~~-~~~~~~--~~~~l---~~i~~la-~~~g~~lvvD~a~~ 219 (358)
...|..+ ++++.+. + .+|+++++++++ ..++++|++ ++++|| ...+. ++|.++| ++||+++|+|++|+
T Consensus 142 ~~~g~~~--~~v~~~~-~-g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~ 217 (423)
T 3ez1_A 142 QTLGFEL--LTVDMQS-D-GPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYR 217 (423)
T ss_dssp HHHTCEE--EEEEEET-T-EECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTS
T ss_pred HHcCCEE--EeccCCC-C-CCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcc
Confidence 4456544 4444442 3 499999999996 346788864 355665 44554 4888888 99999999999976
Q ss_pred hhhhhc-ccc-CCC---------CCcccEEEecCCcc-CCCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCC
Q 018318 220 SGLVAA-QEA-ANP---------FEYCHIVTTTTHKS-LRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSL 287 (358)
Q Consensus 220 ~g~~~~-~~~-~~~---------~~~~d~~~~s~~K~-l~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (358)
...... +.. ..+ ..+.++++.|+||+ ++|.+.|+++.++ ++.+.+........
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~---------------~~~~~~~~~~~~~~ 282 (423)
T 3ez1_A 218 VHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSE---------------DNIRWLSKYLGAQS 282 (423)
T ss_dssp SCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECH---------------HHHHHHHHHHHHSC
T ss_pred hhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCH---------------HHHHHHHHHHhhhc
Confidence 322221 110 001 11456889999996 4677889999877 35454443221111
Q ss_pred cCCCChhHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHH----HHHhhCC--ceeeeCCCcceEEEEEcCC
Q 018318 288 QGGPHNHQIGALAVALKQAST---PAFKAYAKQVKANAVALG----NYLTGKG--YSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 288 ~~~~~~~~~~al~~al~~~~~---~~~~~~~~~~~~~~~~l~----~~L~~~G--~~~~~~~~~~~~~~v~~~~ 352 (358)
. +++.....+...++..+.. ..+....+.+.++++.+. +.|.+.| +++.. +..+..+|+++..
T Consensus 283 ~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-p~~g~~~~~~~~~ 354 (423)
T 3ez1_A 283 I-GPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTL-PKGGYFISLDTAE 354 (423)
T ss_dssp S-CCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECC-CSBSSCEEEEESS
T ss_pred c-CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeC-CCccEEEEEECCC
Confidence 1 2233333333344443111 122333344444444444 4444455 66553 4567778888753
No 180
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.77 E-value=8e-18 Score=159.54 Aligned_cols=305 Identities=14% Similarity=0.163 Sum_probs=169.9
Q ss_pred ccccchHHHHHHHHHHHHhh--cceeEeccC--C-----CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHH
Q 018318 12 LETVDPEIHDLIEKEKRRQC--RGIELIASE--N-----FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLC 82 (358)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~--~~~~l~a~~--~-----~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~ 82 (358)
+...+++.+....+...... ..+.|..+. + .+.+.|.+++..........+|+.. .| ..++.+.+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~g---~~~lr~~i 80 (401)
T 7aat_A 7 VEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPI---AG---LADFTRAS 80 (401)
T ss_dssp CCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCT---TC---CHHHHHHH
T ss_pred CCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCC---CC---CHHHHHHH
Confidence 34444554433333323232 346665543 2 2346788887765542222234321 12 23444334
Q ss_pred HHHHHHhcCCC--CCCCCcccc--ccCChHHHHHHHHhh---cCCCCeEEEecCCCCccccccccccCCcccccccceeE
Q 018318 83 RSRALQTFHLD--PTQWGVNVQ--PYSGSPANFAAYTAV---LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFE 155 (358)
Q Consensus 83 ~~~la~~~g~~--~~~~~~~v~--~~sGt~a~~~~l~a~---~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 155 (358)
.+++.+.+|.. +++ .++ +++|++|+..++.++ ++|||+|++..|.|.++.. .++..|..+.
T Consensus 81 a~~~~~~~~~~~~~~~---i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~---------~~~~~g~~~~ 148 (401)
T 7aat_A 81 AELALGENSEAFKSGR---YVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTP---------IFRDAGLQLQ 148 (401)
T ss_dssp HHHHHCTTCHHHHTTC---EEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHH---------HHHHTTCEEE
T ss_pred HHHhcCCCccccccCc---eEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHH---------HHHHcCCeeE
Confidence 44554444421 332 222 456678998887665 4899999999998876542 2345666544
Q ss_pred EeecccCCCCCCCCHHHHHHHHhhc--CCcEEEEcCCCCCC-----ccchHHHHHHHHHhCCEEEEechhhhhhhhcccc
Q 018318 156 SLPYKVNSSTGYIDYDKLEEKALDF--RPKLIICGGSAYPR-----DWDYARFRAVADKCGALLLCDMAHISGLVAAQEA 228 (358)
Q Consensus 156 ~~~~~~~~~~~~id~~~l~~~l~~~--~~~~v~~~~~~~~~-----~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~ 228 (358)
.++++ +.+++.+|++++++.+++. ++++|++++++||+ ..++++|+++|++||+++++|++|. ++...+..
T Consensus 149 ~~~~~-~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~-~~~~~~~~ 226 (401)
T 7aat_A 149 AYRYY-DPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQ-GFASGDIN 226 (401)
T ss_dssp EEECE-ETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSCHH
T ss_pred eeeee-ccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccc-cccCCCcc
Confidence 44442 2236789999988888652 46788888888763 2358899999999999999999964 33322110
Q ss_pred --CCCC------CcccEEEecCCccC--CCCCeeEEEEeCCCCCCCCCCCCCcccc----HHHHhhhhcCCCCcCCCChh
Q 018318 229 --ANPF------EYCHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYD----FEDKINFAVFPSLQGGPHNH 294 (358)
Q Consensus 229 --~~~~------~~~d~~~~s~~K~l--~g~~gG~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 294 (358)
...+ ....+++.|+||++ +|.+.|++++...- .+ +...+......... ++...
T Consensus 227 ~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~ 293 (401)
T 7aat_A 227 RDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRD------------AEEAKRVESQLKILIRPMYS-NPPMN 293 (401)
T ss_dssp HHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSS------------HHHHHHHHHHHHHHHHHHHS-SCCHH
T ss_pred ccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCC------------HHHHHHHHHHHHHHHHhccC-CCChH
Confidence 0001 13458899999987 35566988874310 02 22222221111111 12222
Q ss_pred HHHHHHHHHHH--hc---cHHHHHHHHHHHHHHHHHHHHHhhCC----ceeeeCCCcceEEEEEc
Q 018318 295 QIGALAVALKQ--AS---TPAFKAYAKQVKANAVALGNYLTGKG----YSLVTGGTENHLVLWDL 350 (358)
Q Consensus 295 ~~~al~~al~~--~~---~~~~~~~~~~~~~~~~~l~~~L~~~G----~~~~~~~~~~~~~~v~~ 350 (358)
..+..+.++.. +. ...++...+++.++++++.+.|++.| +++.. +..+..+|+++
T Consensus 294 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~ 357 (401)
T 7aat_A 294 GARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIT-DQIGMFCFTGL 357 (401)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HCCSSEEECCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceec-CCcceEEecCC
Confidence 11111112211 00 12345667788899999999999876 54443 35566777654
No 181
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.76 E-value=4.5e-18 Score=164.54 Aligned_cols=265 Identities=13% Similarity=0.101 Sum_probs=153.9
Q ss_pred HHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCC----
Q 018318 45 FAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEP---- 120 (358)
Q Consensus 45 ~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~---- 120 (358)
++|.+++.+.+.... ..|...+...+++ +++++++|.+. .+++++|++|+..++.+++++
T Consensus 53 ~~v~~a~~~~l~~~~-------~~y~~~~~~~~l~----~~la~~~~~~~-----v~~t~~gt~A~~~al~~~~~~~~~~ 116 (467)
T 2oqx_A 53 GAVTQSMQAAMMRGD-------EAYSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKREQE 116 (467)
T ss_dssp SCCCHHHHHHTTSCC-------CCSSSCHHHHHHH----HHHHHHHCCSE-----EEEEC--CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCc-------ceeccCchhHHHH----HHHHHHhCcCc-----EEEcCCcHHHHHHHHHHHhcccccc
Confidence 677777766553211 1122334455565 78899998754 366778899999999998888
Q ss_pred -C----CeEEEecCCCCccccccccccCCcccccccceeEE----eecccC---CCCCCCCHHHHHHHHhh---cCCcEE
Q 018318 121 -H----DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFES----LPYKVN---SSTGYIDYDKLEEKALD---FRPKLI 185 (358)
Q Consensus 121 -g----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~---~~~~~id~~~l~~~l~~---~~~~~v 185 (358)
| |+|++. ..|..-+.. .....+..... .+++.+ ..++.+|+++|++++++ .++++|
T Consensus 117 ~G~~~~d~Ii~~-~~h~~t~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~v 187 (467)
T 2oqx_A 117 KGLDRSKMVAFS-NYFFDTTQG--------HSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYI 187 (467)
T ss_dssp HCCCTTTCEEEE-SSCCHHHHH--------HHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCE
T ss_pred CCCCccceEEec-ccccccchh--------hhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEE
Confidence 8 997765 444210000 00111211111 111111 12457899999999975 268888
Q ss_pred EEcCCCCC---Cc---cchHHHHHHHHHhCCEEEEechhhh-hhh--------hccccCCCC-----CcccEEEecCCcc
Q 018318 186 ICGGSAYP---RD---WDYARFRAVADKCGALLLCDMAHIS-GLV--------AAQEAANPF-----EYCHIVTTTTHKS 245 (358)
Q Consensus 186 ~~~~~~~~---~~---~~l~~i~~la~~~g~~lvvD~a~~~-g~~--------~~~~~~~~~-----~~~d~~~~s~~K~ 245 (358)
+++.++|+ .+ .++++|.++|++||+++|+|++|+. +.. ..+.-...+ ..+|++++|+||+
T Consensus 188 i~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~ 267 (467)
T 2oqx_A 188 VATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267 (467)
T ss_dssp EEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSST
T ss_pred EEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccc
Confidence 88766643 22 3588999999999999999999876 432 111100011 2478889999999
Q ss_pred CCCCCeeEEEEeCC-CCCCCCCCCCCccccHHHHhhhhc--CCCC--cCCCChhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 018318 246 LRGPRAGMIFYRKG-PKPPKKGQPEGAVYDFEDKINFAV--FPSL--QGGPHNHQIGALAVALKQASTPAFKAYAKQVKA 320 (358)
Q Consensus 246 l~g~~gG~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~ 320 (358)
++.|.||+++++++ +. ++...+.... ..+. .+......++++..++..... +...++..+
T Consensus 268 ~g~~~Gg~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~---~~~~~~~~~ 332 (467)
T 2oqx_A 268 AMVPMGGLLCMKDDSFF------------DVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN---LDWLAYRIA 332 (467)
T ss_dssp TCCSSCEEEEECSGGGH------------HHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred cCCCCceEEEecChhHH------------HHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhh---HHHHHHHHH
Confidence 87666888887763 10 1222222211 1111 122222223333333332221 234455678
Q ss_pred HHHHHHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 321 NAVALGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 321 ~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
+++++.+.|.+.|+++. +..++.+|+++.
T Consensus 333 ~~~~l~~~L~~~~~~~~--~~~~~~~~~~~~ 361 (467)
T 2oqx_A 333 QVQYLVDGLEEIGVVCQ--QAGGHAAFVDAG 361 (467)
T ss_dssp HHHHHHHHHHHTTCCEE--EECSSCEEEEHH
T ss_pred HHHHHHHHHHHCCCeee--cCCceEEEEech
Confidence 88999999988888776 345678998874
No 182
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.76 E-value=2.6e-17 Score=155.57 Aligned_cols=261 Identities=11% Similarity=0.017 Sum_probs=158.3
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcCC--
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEP-- 120 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~~-- 120 (358)
.+|.|.+++.+.+.. .. +.+..+ ..+...+++ +++++++|.+. .+++++|++|+..++.++..+
T Consensus 53 ~~p~v~~a~~~~~~~-~~--~~~~~~--~~~~~~~l~----~~la~~~g~~~-----v~~~~~gt~a~~~al~~~~~~~~ 118 (392)
T 3ruy_A 53 RHPKIINALIDQANR-VT--LTSRAF--HSDQLGPWY----EKVAKLTNKEM-----VLPMNTGAEAVETAIKTARRWAY 118 (392)
T ss_dssp TCHHHHHHHHHHHTT-CS--CCCTTS--EETTHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cc--cccccc--CCHHHHHHH----HHHHHhcCCCE-----EEEeCcHHHHHHHHHHHHHHhhh
Confidence 479999999887643 21 111111 234455555 78999998442 466778889999998877543
Q ss_pred --------CCeEEEecCCCCccccccccccCCcccccccc---eeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcC
Q 018318 121 --------HDRIMGLDLPSGGHLTHGYYTSGGKKISATSI---YFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGG 189 (358)
Q Consensus 121 --------gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~ 189 (358)
+|+|++..+.|.+...... ...+......+. ......++ ..|+++++++++ .++++|++++
T Consensus 119 ~~~~~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~-~~~~~v~~~~ 190 (392)
T 3ruy_A 119 DVKKVEANRAEIIVCEDNFHGRTMGAV-SMSSNEEYKRGFGPMLPGIIVIP------YGDLEALKAAIT-PNTAAFILEP 190 (392)
T ss_dssp HTSCCCTTCCEEEEETTCCCCSSHHHH-HTCSCTTTTTTCCSCCSSEEEEC------TTCHHHHHHHCC-TTEEEEEECS
T ss_pred hccCCCCCCcEEEEEcCCcCCCCHhhh-hccCChhhccccCCCCCCCeeeC------cccHHHHHHHhc-cCeEEEEEeC
Confidence 6799999988865431110 000000000000 00111111 238999999997 4789998887
Q ss_pred CCCC--Cccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C-cccEEEecCCccCCC--CCeeEEEEe
Q 018318 190 SAYP--RDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLRG--PRAGMIFYR 257 (358)
Q Consensus 190 ~~~~--~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~-~~d~~~~s~~K~l~g--~~gG~i~~~ 257 (358)
++++ ...| +++|.++|++||+++|+|++|+ |+...+.. ... + ..|++++ +|+++| .++|+++++
T Consensus 191 ~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~g~~-~~~~~~~~~~d~~~~--SK~l~gG~~~~G~~~~~ 266 (392)
T 3ruy_A 191 IQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQT-GLGRTGKV-FACDWDNVTPDMYIL--GKALGGGVFPISCAAAN 266 (392)
T ss_dssp SBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TTTTTSSS-SGGGGGTCCCSEEEE--CGGGGTTTSCCEEEEEC
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh-CCCccccc-hhhhccCCCCCEEEE--chhhhCChhhhEEEEEC
Confidence 7664 5566 9999999999999999999985 43322211 111 2 4577755 599876 688999987
Q ss_pred CCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCc---
Q 018318 258 KGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGY--- 334 (358)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~--- 334 (358)
++ +.+.+......... +.+....+++.++++.+. . +...+++.++++++++.|++.+.
T Consensus 267 ~~---------------~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~--~-~~~~~~~~~~~~~l~~~L~~~~~~~~ 327 (392)
T 3ruy_A 267 RD---------------ILGVFEPGSHGSTF-GGNPLACAVSIAALEVLE--E-EKLTERSLQLGEKLVGQLKEIDNPMI 327 (392)
T ss_dssp HH---------------HHTTCCTTSSCCSS-TTCHHHHHHHHHHHHHHH--H-TTHHHHHHHHHHHHHHHHTTCCCTTE
T ss_pred HH---------------HHhhhccCCcCCCC-CCCHHHHHHHHHHHHHHH--h-hhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 73 44444332221111 234444555555565542 1 56678889999999999998753
Q ss_pred eeeeCCCcceEEEEEc
Q 018318 335 SLVTGGTENHLVLWDL 350 (358)
Q Consensus 335 ~~~~~~~~~~~~~v~~ 350 (358)
.... ..+..+++.+
T Consensus 328 ~~~~--~~g~~~~~~~ 341 (392)
T 3ruy_A 328 TEVR--GKGLFIGIEL 341 (392)
T ss_dssp EEEE--EETTEEEEEE
T ss_pred eEEE--eeeeEEEEEE
Confidence 3322 2344555554
No 183
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.76 E-value=2e-17 Score=162.84 Aligned_cols=285 Identities=13% Similarity=0.066 Sum_probs=164.2
Q ss_pred CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCC--CCCCCCccccccCChHHHHHHHHh---
Q 018318 42 FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHL--DPTQWGVNVQPYSGSPANFAAYTA--- 116 (358)
Q Consensus 42 ~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~--~~~~~~~~v~~~sGt~a~~~~l~a--- 116 (358)
..++.+++++.+.+... +|.. ......++++.+.+++++.++. ........+++++|++|+..++.+
T Consensus 115 ~~~~~~v~a~~~~~~~~---~y~~-----~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~ 186 (533)
T 3f6t_A 115 LNRDKVVAEWVNGAVAN---NYPV-----PDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAE 186 (533)
T ss_dssp CCHHHHHHHHHHHHHTC---SCCS-----SSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHhC---CCCC-----CcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhh
Confidence 34677777776665421 2221 1122345665556666655232 211000124445557799999887
Q ss_pred --hcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccC-CCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC
Q 018318 117 --VLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN-SSTGYIDYDKLEEKALDFRPKLIICGGSAYP 193 (358)
Q Consensus 117 --~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~ 193 (358)
++++||+|++..|+|.++.. .+...|..+..++++.+ .+++.+|++++++++.+ ++++|++++++||
T Consensus 187 ~~l~~~gd~Viv~~p~~~~~~~---------~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~-~~k~v~l~~p~NP 256 (533)
T 3f6t_A 187 NHLLKKGDKIAINEPIFTPYLR---------IPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP-SIKALIVVNPTNP 256 (533)
T ss_dssp TTSSCTTCEEEEESSCCHHHHT---------SGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT-TEEEEEEESSCTT
T ss_pred hhccCCcCEEEEcCCCcHHHHH---------HHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC-CCeEEEEeCCCCC
Confidence 78999999999998876542 23445665555555331 23578999999999864 7888888777776
Q ss_pred --Cccc---hHHHHHHHH-HhCCEEEEechhhhhhhhccccCCCC---C-cccEEEecCCccCC--CCCeeEEEEeCC--
Q 018318 194 --RDWD---YARFRAVAD-KCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLR--GPRAGMIFYRKG-- 259 (358)
Q Consensus 194 --~~~~---l~~i~~la~-~~g~~lvvD~a~~~g~~~~~~~~~~~---~-~~d~~~~s~~K~l~--g~~gG~i~~~~~-- 259 (358)
...+ +++|+++|+ +||+++|+|++|+ ++.+.. .++ . +.++++.|+||.++ |.+.|+++++++
T Consensus 257 tG~~~~~~~l~~l~~la~~~~~~~li~De~y~-~~~~~~---~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~ 332 (533)
T 3f6t_A 257 TSKEFDTNALNAIKQAVEKNPKLMIISDEVYG-AFVPNF---KSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNV 332 (533)
T ss_dssp TCBCCCHHHHHHHHHHHHHCTTCEEEEECTTG-GGSTTC---CCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSCH
T ss_pred CccccCHHHHHHHHHHHHhCCCCEEEEcCCcc-ccccCc---cCHhhcCCCCEEEEecCcccCCCcccceEEEEECcHHH
Confidence 3444 558888898 6899999999976 443311 111 1 45699999999874 566799999875
Q ss_pred ---CCC-CCC------------CCCCCccccHHHH----hhhhcCCCCcCCCChhHHHHHH-HHHHHh--------ccHH
Q 018318 260 ---PKP-PKK------------GQPEGAVYDFEDK----INFAVFPSLQGGPHNHQIGALA-VALKQA--------STPA 310 (358)
Q Consensus 260 ---~~~-~~~------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~al~-~al~~~--------~~~~ 310 (358)
+.. +.+ .........+.++ +.... ....++++....++++ .++..+ ....
T Consensus 333 ~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~-~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~ 411 (533)
T 3f6t_A 333 FDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIG-LYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPY 411 (533)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTT-TGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHH
T ss_pred HHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHH-HhcccCCChHHHHHHHHHHHHHHhhhccccchHHH
Confidence 100 000 0000000000000 11111 1112233333333321 122222 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 311 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 311 ~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
.+..+++++++++++.+.|. .|+++.. +..+..+|+++.
T Consensus 412 ~~~~~~~~~~r~~~l~~~L~-~~~~~~~-~~~g~~~~~~l~ 450 (533)
T 3f6t_A 412 IDIARKLVSERYDQLHDAMQ-APKDETD-TNTHYYSLIDIY 450 (533)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CCCCCST-TBCCSEEEEEHH
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCccccC-CCceEEEEEehH
Confidence 56777888899999999997 7776543 456667888874
No 184
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.76 E-value=3.2e-18 Score=161.83 Aligned_cols=300 Identities=15% Similarity=0.123 Sum_probs=171.8
Q ss_pred cccccchHHHHHHHHHHHHh--hcceeEeccC----C---CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHH
Q 018318 11 SLETVDPEIHDLIEKEKRRQ--CRGIELIASE----N---FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENL 81 (358)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~a~~----~---~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~ 81 (358)
+++..+++.+..+.+..... .+.+.+..+. + ++++.|.+++.+.+......+|+.. ....+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr-- 75 (394)
T 2ay1_A 4 NLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGL------SGEPEFQ-- 75 (394)
T ss_dssp GCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCS------SCCHHHH--
T ss_pred cCccCCCccHHHHHHHHHhCCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCC------CCcHHHH--
Confidence 45556666554444433322 3456666654 1 3479999998776532111123221 1223454
Q ss_pred HHHHHHHhc-CC--CCCCCCcccc--ccCChHHHHHHHHhhc--CCCCeEEEecCCCCccccccccccCCccccccccee
Q 018318 82 CRSRALQTF-HL--DPTQWGVNVQ--PYSGSPANFAAYTAVL--EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYF 154 (358)
Q Consensus 82 ~~~~la~~~-g~--~~~~~~~~v~--~~sGt~a~~~~l~a~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 154 (358)
+.+++++ +. ++++ .++ +++|++|+..++.++. .+||+|++..|.|.++.. .+...|..+
T Consensus 76 --~~la~~~~~~~~~~~~---v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g~~~ 141 (394)
T 2ay1_A 76 --KAMGELILGDGLKSET---TATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVS---------IMNFMGLPV 141 (394)
T ss_dssp --HHHHHHHHGGGCCGGG---EEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH---------HHHHHTCCE
T ss_pred --HHHHHHHhCCCCCccc---EEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHH---------HHHHcCCce
Confidence 4555554 43 3321 233 5667789999887764 499999999988876431 223455544
Q ss_pred EEeecccCCCCCCCCHHHHHHHHhhc--CCcEEEEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhcc-
Q 018318 155 ESLPYKVNSSTGYIDYDKLEEKALDF--RPKLIICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAAQ- 226 (358)
Q Consensus 155 ~~~~~~~~~~~~~id~~~l~~~l~~~--~~~~v~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~~- 226 (358)
..++++.+ +++.+|++++++++++. +++++++++++|| ... ++++|.++|++||+++|+|++|+.. ...+
T Consensus 142 ~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~-~~~~~ 219 (394)
T 2ay1_A 142 QTYRYFDA-ETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGF-GDGLE 219 (394)
T ss_dssp EEEECEET-TTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTS-SSCHH
T ss_pred EEEecccc-cCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCcccc-ccCcc
Confidence 44443211 35679999999999764 2456666777766 333 4778999999999999999997632 2110
Q ss_pred --ccC-CCCC--cc-cEEEecCCccCC--CCCeeEEEE--eCCCCCCCCCCCCCccccH----HHHhhhhcCCCCcCCCC
Q 018318 227 --EAA-NPFE--YC-HIVTTTTHKSLR--GPRAGMIFY--RKGPKPPKKGQPEGAVYDF----EDKINFAVFPSLQGGPH 292 (358)
Q Consensus 227 --~~~-~~~~--~~-d~~~~s~~K~l~--g~~gG~i~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 292 (358)
... ..+. +. .+++.|+||+++ |.+.|++++ +++ ++ ...+....... .++++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~--------------~~~~~l~~~~~~~~~~~-~~~~~ 284 (394)
T 2ay1_A 220 EDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADA--------------ATRELAQGAMAFLNRQT-YSFPP 284 (394)
T ss_dssp HHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSH--------------HHHHHHHHHHHHHHHTT-TSSCC
T ss_pred cchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCH--------------HHHHHHHHHHHHHHhhh-cCCCC
Confidence 000 0111 22 377889999874 455699887 332 22 22222111111 12223
Q ss_pred hhHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHhhCC----ceeeeCCCcceEEEEEc
Q 018318 293 NHQIGALAVALKQA-----STPAFKAYAKQVKANAVALGNYLTGKG----YSLVTGGTENHLVLWDL 350 (358)
Q Consensus 293 ~~~~~al~~al~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~G----~~~~~~~~~~~~~~v~~ 350 (358)
....+++..+++.. .....+...+++.++++++.+.|++.| +++.. +..+..+|+++
T Consensus 285 ~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~ 350 (394)
T 2ay1_A 285 FHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVA-EHRGMFSRLGA 350 (394)
T ss_dssp CHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHH-HCCSSEEECCC
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEc-CCceEEEeeCC
Confidence 33333334444321 012346677888888999999998865 66554 23455677654
No 185
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.76 E-value=5.7e-18 Score=162.77 Aligned_cols=237 Identities=14% Similarity=0.055 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh-cCCCCeEEEecCCCCccccccccccCCcccccccce
Q 018318 75 IDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV-LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIY 153 (358)
Q Consensus 75 ~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 153 (358)
..++++++++++++++|++..+ .+++++++.+++.++.++ +++||+|+++.+.|+++..... ..++..|..
T Consensus 106 ~~~~~~~~~~~la~~~g~~~~~---i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~-----~~a~~~G~~ 177 (438)
T 1wyu_A 106 VLQATFEYQTMIAELAGLEIAN---ASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLR-----AYLEAVGAK 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEC---SCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHH-----HHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHhCCCccc---eEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHH-----HHHHHCCCE
Confidence 3445557789999999998632 133344454445544443 6799999999988875431110 001225654
Q ss_pred eEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCC-CCCccchHHHHHHHHHhCCEEEEech-hhhhhhhccccCCC
Q 018318 154 FESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA-YPRDWDYARFRAVADKCGALLLCDMA-HISGLVAAQEAANP 231 (358)
Q Consensus 154 ~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~-~~~~~~l~~i~~la~~~g~~lvvD~a-~~~g~~~~~~~~~~ 231 (358)
+ +.++. +++.+|+++ +.+ ++++|++++++ +|...|+++|+++||++|+++++|.. |+.|... .+
T Consensus 178 v--~~v~~--~~~~~d~~~----i~~-~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~-----~~ 243 (438)
T 1wyu_A 178 L--LTLPL--EGGRTPLPE----VGE-EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLK-----PP 243 (438)
T ss_dssp E--EEECC--BTTBCCCCC----CCT-TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBC-----CH
T ss_pred E--EEEcC--cCCccCHHH----hCC-CeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcC-----CC
Confidence 4 44443 256788776 443 68888887763 34677999999999999999997755 5555421 11
Q ss_pred CC-cccEEEecCCc-----cCCCCCeeEEEEeCCCCC-CCCC---------CCCCccccH---HHHhhhhcCCCCcCCCC
Q 018318 232 FE-YCHIVTTTTHK-----SLRGPRAGMIFYRKGPKP-PKKG---------QPEGAVYDF---EDKINFAVFPSLQGGPH 292 (358)
Q Consensus 232 ~~-~~d~~~~s~~K-----~l~g~~gG~i~~~~~~~~-~~~~---------~~~~~~~~~---~~~~~~~~~~~~~~~~~ 292 (358)
-. ++|++++|.|| |++||++|++++++++.+ +... +...+.+.+ ...++. . .++++
T Consensus 244 ~~~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~--~---~~t~~ 318 (438)
T 1wyu_A 244 GAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRR--A---KAKSN 318 (438)
T ss_dssp HHHTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHG--G---GSSCC
T ss_pred ccCCCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccch--h---cccCC
Confidence 12 78999999777 677896799999876432 1100 000000000 000010 0 11222
Q ss_pred h---hHHHHHHHH--HHHhccHHHHHHHHHHHHHHHHHHHHHhhC-Cceeee
Q 018318 293 N---HQIGALAVA--LKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVT 338 (358)
Q Consensus 293 ~---~~~~al~~a--l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~ 338 (358)
. ..++++.++ +..+..++++++.++..++++++.+.|++. |+++..
T Consensus 319 ~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 370 (438)
T 1wyu_A 319 ITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFT 370 (438)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECS
T ss_pred ccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECC
Confidence 2 334444444 444443457788899999999999999998 999875
No 186
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.76 E-value=4.4e-18 Score=161.34 Aligned_cols=268 Identities=9% Similarity=-0.024 Sum_probs=162.6
Q ss_pred cceeEeccCCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCcccc-ccCChHHH
Q 018318 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQ-PYSGSPAN 110 (358)
Q Consensus 32 ~~~~l~a~~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~-~~sGt~a~ 110 (358)
..+.+.+++..+|+.|++++.+... .. .+. . ++ +..+ ..+.+.+++++++++|++.++ ..++ +++|++|+
T Consensus 40 ~~~~~~~~~~~~~~~v~~a~~~~~~-~~-~~~--~-~~-~~~~-~~~~~~~~~~la~~~g~~~~~--~i~~~t~g~t~al 110 (398)
T 2fyf_A 40 RDGRFGSGPSKVRLEQLQTLTTTAA-AL-FGT--S-HR-QAPV-KNLVGRVRSGLAELFSLPDGY--EVILGNGGATAFW 110 (398)
T ss_dssp SSCBCCSSSCCCCHHHHHGGGTTTT-TT-TTS--C-TT-SHHH-HHHHHHHHHHHHHHTTCCTTC--EEEEEETCHHHHH
T ss_pred CCccccCCCCCCCHHHHHHHhhcCC-Cc-cCc--C-cC-CHHH-HHHHHHHHHHHHHHhCCCCCc--eEEEeCCchhHHH
Confidence 4567778888899999999876310 00 010 0 11 1223 233446789999999997421 1244 45667899
Q ss_pred HHHHHhhcCCC-CeEEEecCCCCccccccccccCCcccccc--cceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEE
Q 018318 111 FAAYTAVLEPH-DRIMGLDLPSGGHLTHGYYTSGGKKISAT--SIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC 187 (358)
Q Consensus 111 ~~~l~a~~~~g-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~ 187 (358)
..++.++++|| |.| ....|+... . ...... |..+..+++ + .+...+.+ +. .++++|++
T Consensus 111 ~~~~~~l~~~gv~~v--~~~~~~~~~-~-------~~~~~~~~g~~~~~v~~--~-~g~~~~~~-----i~-~~~~~v~~ 171 (398)
T 2fyf_A 111 DAAAFGLIDKRSLHL--TYGEFSAKF-A-------SAVSKNPFVGEPIIITS--D-PGSAPEPQ-----TD-PSVDVIAW 171 (398)
T ss_dssp HHHHHHTCSSCEEEE--ECSHHHHHH-H-------HHHHHCTTSCCCEEEEC--C-TTCCCCCC-----CC-TTCSEEEE
T ss_pred HHHHHHhcCCCeEEE--eCCHHHHHH-H-------HHHHHhCCCCceEEEec--C-CCCCCCcc-----cc-CCCCEEEE
Confidence 99999999887 333 332221100 0 011122 444344433 3 12233321 33 36899887
Q ss_pred cCCCC--CCccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCCcccEEEecCCccCCCCCe-eEEEEeCCCCCCC
Q 018318 188 GGSAY--PRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPK 264 (358)
Q Consensus 188 ~~~~~--~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g-G~i~~~~~~~~~~ 264 (358)
++++| |...|+++|.++ +|+++|+|++|+.|.. +.++.++|++++|+||+++++.| |+++++++
T Consensus 172 ~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~-----~~~~~~~di~~~s~sK~~~~~gg~g~l~~~~~----- 238 (398)
T 2fyf_A 172 AHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGL-----PVDIAETDAYYFAPQKNFASDGGLWLAIMSPA----- 238 (398)
T ss_dssp ESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTS-----CCCGGGCSEEEECTTSTTCSCSSEEEEEECHH-----
T ss_pred eCcCCCcceecchHHhhhh---cCCeEEEEeccccCCc-----ccCcccCcEEEEecCcccCCCCceEEEEECHH-----
Confidence 76654 456788888776 8999999999876542 12233689999999999865533 78888763
Q ss_pred CCCCCCccccHHHHhhhh--------------------cCCCCcCCCChhHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Q 018318 265 KGQPEGAVYDFEDKINFA--------------------VFPSLQGGPHNHQIGALAVALKQASTPA-FKAYAKQVKANAV 323 (358)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~al~~al~~~~~~~-~~~~~~~~~~~~~ 323 (358)
+.+.+... ......++++...++++.++++.+...+ ++.+.++..++++
T Consensus 239 ----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 308 (398)
T 2fyf_A 239 ----------ALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQ 308 (398)
T ss_dssp ----------HHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred ----------HHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33322110 0011224456666667777777654333 6788899999999
Q ss_pred HHHHHHhhC-Cceeee-CC-Ccce-EEEEEc
Q 018318 324 ALGNYLTGK-GYSLVT-GG-TENH-LVLWDL 350 (358)
Q Consensus 324 ~l~~~L~~~-G~~~~~-~~-~~~~-~~~v~~ 350 (358)
++.+.|++. |+++.. ++ ..++ .+|+.+
T Consensus 309 ~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~ 339 (398)
T 2fyf_A 309 RLYSWAQERPYTTPFVTDPGLRSQVVGTIDF 339 (398)
T ss_dssp HHHHHHHHSTTEEESCCSGGGBCSSEEEEEE
T ss_pred HHHHHHHHcCCceeccCChhhcCCcEEEEEC
Confidence 999999998 888863 12 2234 788876
No 187
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.75 E-value=2.5e-17 Score=157.64 Aligned_cols=235 Identities=12% Similarity=-0.034 Sum_probs=141.4
Q ss_pred HHHHHHhcCCCCCCCCccccccCC-hHHH--HHHHHhhcC--C----------CCeEEEecCCCCccccccccccCCccc
Q 018318 83 RSRALQTFHLDPTQWGVNVQPYSG-SPAN--FAAYTAVLE--P----------HDRIMGLDLPSGGHLTHGYYTSGGKKI 147 (358)
Q Consensus 83 ~~~la~~~g~~~~~~~~~v~~~sG-t~a~--~~~l~a~~~--~----------gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 147 (358)
|+.++++++++++ .|++++| ++++ ..++.++++ | ||+|++..|.|.++.. .+
T Consensus 84 r~~ia~~~~~~~~----~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~---------~~ 150 (427)
T 3ppl_A 84 RQIWADLLGVPVE----QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFS---------IT 150 (427)
T ss_dssp HHHHHHHHTSCGG----GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH---------HH
T ss_pred HHHHHHHhCCCcc----eEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHH---------HH
Confidence 4778888898864 3445555 5688 477777766 6 9999999998876431 23
Q ss_pred ccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEc-CCCCC--CccchH---HHHHHH-HHhCCEEEEechhhh
Q 018318 148 SATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG-GSAYP--RDWDYA---RFRAVA-DKCGALLLCDMAHIS 220 (358)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~-~~~~~--~~~~l~---~i~~la-~~~g~~lvvD~a~~~ 220 (358)
...|..+ +++++++ + .+|++++++++++.++++|++. .++|| ...+.+ +|.++| ++||+++|+|++|+.
T Consensus 151 ~~~g~~~--~~v~~~~-~-g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~ 226 (427)
T 3ppl_A 151 ERFGFEM--ISVPMNE-D-GPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAV 226 (427)
T ss_dssp HHTTCEE--EEEEEET-T-EECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTT
T ss_pred HHcCCEE--EEeCCCC-C-CCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcc
Confidence 4566544 4444443 3 3999999999954578888754 45665 455555 888999 999999999999753
Q ss_pred hhhhccccCCC-----------CCcccEEEecCCccC-CCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCc
Q 018318 221 GLVAAQEAANP-----------FEYCHIVTTTTHKSL-RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQ 288 (358)
Q Consensus 221 g~~~~~~~~~~-----------~~~~d~~~~s~~K~l-~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (358)
+.+.+....+ ..+.+++++|+||++ +|.+.|++++++ ++.+.+.........
T Consensus 227 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~---------------~l~~~~~~~~~~~~~ 290 (427)
T 3ppl_A 227 -HTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSA---------------ENRKWYTGHAGIRGI 290 (427)
T ss_dssp -CBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCH---------------HHHHHHHHHHHHHCS
T ss_pred -cccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCH---------------HHHHHHHHHhhcccC
Confidence 2222111011 114568899999974 466779999876 354444432111111
Q ss_pred CCCChhHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhh----C-CceeeeCCCcceEEEEEcCC
Q 018318 289 GGPHNHQIGALAVALKQA--STPAFKAYAKQVKANAVALGNYLTG----K-GYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 289 ~~~~~~~~~al~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~----~-G~~~~~~~~~~~~~~v~~~~ 352 (358)
+++.....++..++... ....+....+++.++++.+.+.|.+ . ++++.. +..++.+|+++..
T Consensus 291 -~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~-p~~g~~~~~~~~~ 359 (427)
T 3ppl_A 291 -GPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTV-PAGGYFISLDVVP 359 (427)
T ss_dssp -CCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECC-CSBSSCEEEECST
T ss_pred -CCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeC-CCccEEEEEECCc
Confidence 12222222222222210 0112334445555556666666544 3 466544 4567789998753
No 188
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.75 E-value=1.6e-17 Score=157.91 Aligned_cols=304 Identities=15% Similarity=0.141 Sum_probs=161.7
Q ss_pred hcccccccchHH-HHHHHHHHHHh-hcceeEeccC--CC-CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHH
Q 018318 8 GNSSLETVDPEI-HDLIEKEKRRQ-CRGIELIASE--NF-TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLC 82 (358)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~l~a~~--~~-~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~ 82 (358)
..++++.++++. ..+........ .+.+.|..+. ++ .++.+.+++.+... ....+|.. .....+++
T Consensus 16 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~-~~~~~y~~------~~g~~~lr--- 85 (409)
T 4eu1_A 16 TQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQATL-GTNMDYAP------VTGIASFV--- 85 (409)
T ss_dssp -----------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTCCC-CSCCCCCC------TTCCHHHH---
T ss_pred HhhcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhcCc-cccccCCC------CCCcHHHH---
Confidence 356777888883 44444332212 2446666553 22 35566666655521 11123322 12223454
Q ss_pred HHHHHHh-cCCC-----CCCCCccccccCChHHHHHH---HHhhcCCCCeEEEecCCCCccccccccccCCcccccccce
Q 018318 83 RSRALQT-FHLD-----PTQWGVNVQPYSGSPANFAA---YTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIY 153 (358)
Q Consensus 83 ~~~la~~-~g~~-----~~~~~~~v~~~sGt~a~~~~---l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 153 (358)
+.++++ +|.. ++++ ..+.+.+|+.++..+ +.+++++||+|++..|.|.++.. .++..|..
T Consensus 86 -~~ia~~~~~~~~~~~~~~~i-~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---------~~~~~g~~ 154 (409)
T 4eu1_A 86 -EEAQKLCFGPTCAALRDGRI-ASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHES---------IFAKAGME 154 (409)
T ss_dssp -HHHHHHHHCSSCHHHHTTCE-EEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHH---------HHHHTTCE
T ss_pred -HHHHHHHcCCCchhhccCce-eeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH---------HHHHcCCe
Confidence 444443 3554 2211 012245566666654 44557899999999998876542 23456654
Q ss_pred eEEeecccCCCCCCCCHHHHHHHHhhc--CCcEEEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhhhhhhcc
Q 018318 154 FESLPYKVNSSTGYIDYDKLEEKALDF--RPKLIICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHISGLVAAQ 226 (358)
Q Consensus 154 ~~~~~~~~~~~~~~id~~~l~~~l~~~--~~~~v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~g~~~~~ 226 (358)
+..+++. +++++.+|++++++++++. +++++++++++|| ...+ +++|+++|++||+++|+|++|. ++.+.+
T Consensus 155 ~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~-~~~~~~ 232 (409)
T 4eu1_A 155 LTPYSYY-DPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQ-GFATGQ 232 (409)
T ss_dssp EEEECCE-ETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSC
T ss_pred EEEEEee-cCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccc-ccccCC
Confidence 4434332 2235789999999999742 3455666778776 3444 6679999999999999999965 333222
Q ss_pred c----cC-CCC-C--cccEEEecCCccCC--CCCeeEE--EEeCCCCCCCCCCCCCcccc----HHHHhhhhcCCCCcCC
Q 018318 227 E----AA-NPF-E--YCHIVTTTTHKSLR--GPRAGMI--FYRKGPKPPKKGQPEGAVYD----FEDKINFAVFPSLQGG 290 (358)
Q Consensus 227 ~----~~-~~~-~--~~d~~~~s~~K~l~--g~~gG~i--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 290 (358)
. .. ..+ + .-.+++.|++|+++ |.+.|++ ++.++ + +.+.+........ .+
T Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~--------------~~~~~l~~~~~~~~~~~~-~~ 297 (409)
T 4eu1_A 233 LDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASA--------------EEAKRLVSQLALLIRPMY-NN 297 (409)
T ss_dssp HHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSH--------------HHHHHHHHHHHHHHHHHH-SS
T ss_pred cccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCH--------------HHHHHHHHHHHHHHhhhc-CC
Confidence 0 00 001 1 22378899999874 5566887 55543 3 3333332211111 12
Q ss_pred CChhHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHHHhhCC----ceeeeCCCcceEEEEEc
Q 018318 291 PHNHQIGALAVALKQAS-----TPAFKAYAKQVKANAVALGNYLTGKG----YSLVTGGTENHLVLWDL 350 (358)
Q Consensus 291 ~~~~~~~al~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~G----~~~~~~~~~~~~~~v~~ 350 (358)
++.....++..++.... ....+..++++.++++++.+.|++.| +++.. +..+..+|+++
T Consensus 298 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~~ 365 (409)
T 4eu1_A 298 PPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIE-RQVGMMAYTGL 365 (409)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HSCSSEEECCC
T ss_pred CChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCceEEEEeCC
Confidence 22233333333333210 12346677889999999999999987 66543 34566677654
No 189
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.75 E-value=5e-18 Score=160.54 Aligned_cols=303 Identities=15% Similarity=0.121 Sum_probs=164.1
Q ss_pred ccccchHHHHHHHHHHHH--hhcceeEeccC----C---CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHH
Q 018318 12 LETVDPEIHDLIEKEKRR--QCRGIELIASE----N---FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLC 82 (358)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~--~~~~~~l~a~~----~---~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~ 82 (358)
++.++++.+..+.+.... .++.+.+..+. + ++++.|.+++.+.+......+|.. .....+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~lr--- 75 (396)
T 2q7w_A 5 ITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLG------IDGIPEFG--- 75 (396)
T ss_dssp CCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCC------TTCCHHHH---
T ss_pred cccCCCchHHHHHHHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCC------CCCCHHHH---
Confidence 445555544433322221 23456666554 1 356999999877653211112321 12223454
Q ss_pred HHHHHHhc---C---CCCCCCCcccc--ccCChHHHHHHHHhh--cCCCCeEEEecCCCCccccccccccCCcccccccc
Q 018318 83 RSRALQTF---H---LDPTQWGVNVQ--PYSGSPANFAAYTAV--LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI 152 (358)
Q Consensus 83 ~~~la~~~---g---~~~~~~~~~v~--~~sGt~a~~~~l~a~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~ 152 (358)
+.+++++ + +++++ .++ +++|++|+..++.++ +.+||+|++..|.|.++.. .+...|.
T Consensus 76 -~~la~~~~~~~~~~~~~~~---v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~---------~~~~~g~ 142 (396)
T 2q7w_A 76 -RCTQELLFGKGSALINDKR---ARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKS---------VFNSAGL 142 (396)
T ss_dssp -HHHHHHHHCTTCHHHHTTC---EEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHH---------HHHHTTC
T ss_pred -HHHHHHHhcCCCCcccccc---EEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHH---------HHHHcCC
Confidence 4455554 2 12322 233 566678999888665 4799999999998876531 2334565
Q ss_pred eeEEeecccCCCCCCCCHHHHHHHHhhc--CCcEEEEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEechhhhhhhhc
Q 018318 153 YFESLPYKVNSSTGYIDYDKLEEKALDF--RPKLIICGGSAYP--RDW---DYARFRAVADKCGALLLCDMAHISGLVAA 225 (358)
Q Consensus 153 ~~~~~~~~~~~~~~~id~~~l~~~l~~~--~~~~v~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD~a~~~g~~~~ 225 (358)
.+..++++.+ +++.+|++++++++++. +++++++++++|| ... ++++|.++|++||+++|+|++|.. +...
T Consensus 143 ~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~-~~~~ 220 (396)
T 2q7w_A 143 EVREYAYYDA-ENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQG-FARG 220 (396)
T ss_dssp EEEEEECEET-TTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTT-SSSC
T ss_pred ceEEEecccC-CCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEeccccc-ccCC
Confidence 4443433211 35789999999999754 2456677877776 333 477899999999999999999753 2221
Q ss_pred c--cc-C-CCCC---cccEEEecCCccCC--CCCeeEEEE--eCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChh
Q 018318 226 Q--EA-A-NPFE---YCHIVTTTTHKSLR--GPRAGMIFY--RKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNH 294 (358)
Q Consensus 226 ~--~~-~-~~~~---~~d~~~~s~~K~l~--g~~gG~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (358)
+ .. . ..+. ..++++.|+||+++ |.+.|++++ +++. .+. ++.+.+....... .++++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~--------~~~--~~~~~~~~~~~~~-~~~~~~~ 289 (396)
T 2q7w_A 221 LEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADSE--------TVD--RAFSQMKAAIRAN-YSNPPAH 289 (396)
T ss_dssp HHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHH--------HHH--HHHHHHHHHHHTT-TSSCCHH
T ss_pred ccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCHH--------HHH--HHHHHHHHHHhhc-cCCCCcH
Confidence 1 00 0 0011 23578999999874 445699886 2310 000 1333333211111 1223333
Q ss_pred HHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHhhCC----ceeeeCCCcceEEEEEc
Q 018318 295 QIGALAVALKQA-----STPAFKAYAKQVKANAVALGNYLTGKG----YSLVTGGTENHLVLWDL 350 (358)
Q Consensus 295 ~~~al~~al~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~G----~~~~~~~~~~~~~~v~~ 350 (358)
..+++..+++.. ..+.++...+++.++++++.+.|++.| +++.. +..+..+|+++
T Consensus 290 ~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~ 353 (396)
T 2q7w_A 290 GASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFII-KQNGMFSFSGL 353 (396)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHH-HCCSSEEECCC
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCCceEEEecC
Confidence 343333443321 012345566778889999999999887 66554 34455577654
No 190
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.75 E-value=2e-17 Score=153.98 Aligned_cols=259 Identities=13% Similarity=0.081 Sum_probs=162.0
Q ss_pred hcceeEeccCCC--CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChH
Q 018318 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (358)
Q Consensus 31 ~~~~~l~a~~~~--~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~ 108 (358)
++.+.+..+.+. +++.|.+++.+.+.. . .+|+.. .. .++ ++++++++|+++++ .+++++|++
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~-~-~~y~~~------~~-~~l----r~~la~~~~~~~~~---i~~t~g~~~ 78 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENLNC-I-RHYPEP------DA-GTL----RQMLAKRNSVDNNA---ILVTNGPTA 78 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTGGG-G-GSCCCT------TC-HHH----HHHHHHHTTCCGGG---EEEESHHHH
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhHhH-H-hcCCCC------cH-HHH----HHHHHHHhCcCHHH---EEEcCCHHH
Confidence 456777666554 479999999877632 2 234332 11 344 48899999987642 244445567
Q ss_pred HHHHHHHhhcCCCCeEEEecCCCCccccccccccCCcccccccceeEEeeccc-CCCCCCCCHHHHHHHHhhcCCcEEEE
Q 018318 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKV-NSSTGYIDYDKLEEKALDFRPKLIIC 187 (358)
Q Consensus 109 a~~~~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~id~~~l~~~l~~~~~~~v~~ 187 (358)
|+..++.++. ||+|++..|.|.++.. .++..|.. +++++. + +...+++ .++++|++
T Consensus 79 al~~~~~~l~--gd~Vi~~~p~~~~~~~---------~~~~~g~~--~~~v~~~~-~~~~~~~---------~~~~~v~i 135 (350)
T 3fkd_A 79 AFYQIAQAFR--GSRSLIAIPSFAEYED---------ACRMYEHE--VCFYPSNE-DIGEADF---------SNMDFCWL 135 (350)
T ss_dssp HHHHHHHHTT--TCEEEEEESCCHHHHH---------HHHHTTCE--EEEEETTS-CGGGSCC---------TTCSEEEE
T ss_pred HHHHHHHHHC--CCEEEEeCCCcHHHHH---------HHHHcCCe--EEEEecCC-ccccCcc---------CCCCEEEE
Confidence 9999988887 9999999988765431 23445654 444444 3 2234444 36888888
Q ss_pred cCCCCC--CccchHHHHHHHHHhC-CEEEEechhhhhhhhccccC-CCCC--cccEEEecCCccCC--CCCeeEEEEeCC
Q 018318 188 GGSAYP--RDWDYARFRAVADKCG-ALLLCDMAHISGLVAAQEAA-NPFE--YCHIVTTTTHKSLR--GPRAGMIFYRKG 259 (358)
Q Consensus 188 ~~~~~~--~~~~l~~i~~la~~~g-~~lvvD~a~~~g~~~~~~~~-~~~~--~~d~~~~s~~K~l~--g~~gG~i~~~~~ 259 (358)
++++|| ...|+++|.++++.++ .++|+|++|+. +...+... ..++ +.+++++|++|+++ |.+.|++++++
T Consensus 136 ~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~-~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~- 213 (350)
T 3fkd_A 136 CNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVS-FTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANK- 213 (350)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTT-SCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCH-
T ss_pred eCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhh-hccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCH-
Confidence 877765 5778999999998876 79999999753 33222111 1112 44588999999874 56679999855
Q ss_pred CCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC-Cceeee
Q 018318 260 PKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVT 338 (358)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~ 338 (358)
++.+.+.....+. +++....+++..+++.. ..+.+..++..++++++.+.|++. |+++.+
T Consensus 214 --------------~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 274 (350)
T 3fkd_A 214 --------------DFMKRVAAFSTPW---AVNALAIEAAKFILIHP--AQFTLPIRKWQRNTVDFITALNRLDGVEVHP 274 (350)
T ss_dssp --------------HHHHHHHTTCCTT---CSCHHHHHHHHHHHHCT--TTTCCCHHHHHHHHHHHHHHHHHSTTEEECC
T ss_pred --------------HHHHHHHHhCCCC---CCCHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHhcCCCcEECC
Confidence 5666665433221 23334444444444432 113233444458899999999987 888764
Q ss_pred CCCcceEEEEEcC
Q 018318 339 GGTENHLVLWDLR 351 (358)
Q Consensus 339 ~~~~~~~~~v~~~ 351 (358)
..+..+|+.+.
T Consensus 275 --~~~~~~~~~~~ 285 (350)
T 3fkd_A 275 --SGTTFFLLRLK 285 (350)
T ss_dssp --CSSSEEEEEES
T ss_pred --CCCcEEEEECC
Confidence 34455666654
No 191
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.75 E-value=9.8e-18 Score=159.59 Aligned_cols=252 Identities=11% Similarity=0.007 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHhcCC--CCCCCCccccccCChHHHHHHHHhhcCCCC-----eEEEe-cCCCCccccccccccCCcc
Q 018318 75 IDEIENLCRSRALQTFHL--DPTQWGVNVQPYSGSPANFAAYTAVLEPHD-----RIMGL-DLPSGGHLTHGYYTSGGKK 146 (358)
Q Consensus 75 ~~~le~~~~~~la~~~g~--~~~~~~~~v~~~sGt~a~~~~l~a~~~~gd-----~Vl~~-~~~~~~~~~~~~~~~~~~~ 146 (358)
..++.+.+.+++.+.+|. ++++ .+++++|++|+..++.+++++|| +|+++ .|+|.++..... .
T Consensus 77 ~~~lr~~ia~~~~~~~g~~~~~~~---i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~------~ 147 (417)
T 3g7q_A 77 KTALLNALAVLLRETLGWDIEPQN---IALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGL------E 147 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGGG---EEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC----------
T ss_pred cHHHHHHHHHHHHHHhCCCCCccc---EEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhcc------c
Confidence 445655555666555554 3331 24444556799999999999988 89887 777765432110 0
Q ss_pred c-ccccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC--Cccc---hHHHHHHHHHhCCEEEEechhhh
Q 018318 147 I-SATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP--RDWD---YARFRAVADKCGALLLCDMAHIS 220 (358)
Q Consensus 147 ~-~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~--~~~~---l~~i~~la~~~g~~lvvD~a~~~ 220 (358)
. ...+....+..++.+..++.+|+++++ +. .++++|++++++|| ...+ +++|.++|++||+++|+|++|+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~-~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~ 224 (417)
T 3g7q_A 148 DDLFVSARPNIELLPEGQFKYHVDFEHLH--IG-EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGV 224 (417)
T ss_dssp -CCEEECCCEEEEEGGGEEEEECCGGGCC--CC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCT
T ss_pred hhhhccccCcccccCCcccccccCHHHhc--cc-cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcc
Confidence 0 111222233334322113468999988 44 36788888877776 4455 88999999999999999999864
Q ss_pred hhhhccccCC-C-CCcccEEEecCCccC-CCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHH
Q 018318 221 GLVAAQEAAN-P-FEYCHIVTTTTHKSL-RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIG 297 (358)
Q Consensus 221 g~~~~~~~~~-~-~~~~d~~~~s~~K~l-~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (358)
.+........ + ..+.++++.|++|++ +|.+.|++++++ ++.+.+......... +++....+
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~~ 288 (417)
T 3g7q_A 225 PFPGIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIAND---------------KTITAIANMNGIISL-APGGMGPA 288 (417)
T ss_dssp TTTCCBCSCCCCCCCTTEEEEEESGGGTCTTSCCEEEECCH---------------HHHHHHHHHHHHHCC-CCCSHHHH
T ss_pred ccccccccccccCCCCCEEEEEechhccCCCcceEEEEeCH---------------HHHHHHHHhhcceee-CCCcHHHH
Confidence 2211000001 1 125678899999953 455679988876 455544432211111 12222233
Q ss_pred HHHHHHHHhcc-HHHHH-HHHHHHHHHHHHHHHHhh----CCceeeeCCCcceEEEEEcCCCCC
Q 018318 298 ALAVALKQAST-PAFKA-YAKQVKANAVALGNYLTG----KGYSLVTGGTENHLVLWDLRPLGL 355 (358)
Q Consensus 298 al~~al~~~~~-~~~~~-~~~~~~~~~~~l~~~L~~----~G~~~~~~~~~~~~~~v~~~~~~~ 355 (358)
++...+..... ....+ ..+++.++++++.+.|.+ .|+++.. +..+..+|+++...++
T Consensus 289 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~ 351 (417)
T 3g7q_A 289 MMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHK-PEGAIFLWLWFKDLPI 351 (417)
T ss_dssp HHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEEC-CCBSSEEEEECTTCSS
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeC-CCcceEEEEEcCCCCC
Confidence 32333332110 11112 344556666666666655 3677764 4677889998865443
No 192
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.75 E-value=6.5e-17 Score=151.69 Aligned_cols=254 Identities=17% Similarity=0.139 Sum_probs=154.0
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHh---hc-
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTA---VL- 118 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a---~~- 118 (358)
.++.+.+++.+.+... +.....| ..+...++ ++++++++|++ + ..+++++|++|+..++.+ +.
T Consensus 45 ~~~~v~~a~~~~~~~~---~~~~~~y--~~~~~~~l----~~~la~~~g~~-~---~v~~~~g~t~a~~~~~~~~~~~~~ 111 (375)
T 2eh6_A 45 AYPKLTEALKEQVEKL---LHVSNLY--ENPWQEEL----AHKLVKHFWTE-G---KVFFANSGTESVEAAIKLARKYWR 111 (375)
T ss_dssp SCHHHHHHHHHHHHHC---SCCCTTB--CCHHHHHH----HHHHHHTSSSC-E---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc---cccCccc--CCHHHHHH----HHHHHhhcCCC-C---eEEEeCchHHHHHHHHHHHHHHhc
Confidence 6899999998876432 1222222 12333344 48899999983 2 235566678899988865 35
Q ss_pred --CCC-CeEEEecCCCCccccccccccCCcccccccce-----eE-----EeecccCCCCCCCCHHHHHHHHhhcCCcEE
Q 018318 119 --EPH-DRIMGLDLPSGGHLTHGYYTSGGKKISATSIY-----FE-----SLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185 (358)
Q Consensus 119 --~~g-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~-----~~~~~~~~~~~~id~~~l~~~l~~~~~~~v 185 (358)
+|| |+|++..+.|.+..... ....+.. +. +..++ .+|++++++++++ ++++|
T Consensus 112 ~~~~g~~~vl~~~~~y~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v 176 (375)
T 2eh6_A 112 DKGKNKWKFISFENSFHGRTYGS--------LSATGQPKFHKGFEPLVPGFSYAK------LNDIDSVYKLLDE-ETAGI 176 (375)
T ss_dssp HTTCCCCEEEEEBTCCCCSSHHH--------HHHCBCGGGTTTTCSCCSSEEEEC------TTCHHHHHTTCCT-TEEEE
T ss_pred cCCCCCCEEEEECCCcCCCchhh--------hhhcCCccccCCCCCCCCCceeCC------CchHHHHHHHhcC-CeEEE
Confidence 788 99999998866532110 1111110 00 11111 2689999998864 78888
Q ss_pred EEcCCCCC--Cccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC----cccEEEecCCccCCC-CCeeEE
Q 018318 186 ICGGSAYP--RDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE----YCHIVTTTTHKSLRG-PRAGMI 254 (358)
Q Consensus 186 ~~~~~~~~--~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~----~~d~~~~s~~K~l~g-~~gG~i 254 (358)
++++++++ ...+ +++|.++|++||+++|+|++|+ ++...+.. ..+. ..|++++| |++++ .+.|++
T Consensus 177 ~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~-~~~~~~~~~~d~~s~S--K~~~~g~~~G~~ 252 (375)
T 2eh6_A 177 IIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQT-GIGRTGEF-YAYQHFNLKPDVIALA--KGLGGGVPIGAI 252 (375)
T ss_dssp EECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-SGGGGGTCCCSEEEEC--GGGGTTSCCEEE
T ss_pred EEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCcc-hhhhhcCCCCCEEEEc--ccccCCCCeEEE
Confidence 88766554 4556 9999999999999999999987 33222210 1121 37887555 98854 455998
Q ss_pred EEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 018318 255 FYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGY 334 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~ 334 (358)
+++++ +.+.+.........+ .+....++..++++.. ....++++++++++.+.|++.+.
T Consensus 253 ~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~~ 311 (375)
T 2eh6_A 253 LAREE---------------VAQSFTPGSHGSTFG-GNPLACRAGTVVVDEV-----EKLLPHVREVGNYFKEKLKELGK 311 (375)
T ss_dssp EEEHH---------------HHTTCCTTSCCCSST-TCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred EEcHH---------------HHhhhcCCCCCCCCC-CCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88773 444343311111122 2222222223333332 25677888899999999998875
Q ss_pred eeeeCCCcceEEEEEcC
Q 018318 335 SLVTGGTENHLVLWDLR 351 (358)
Q Consensus 335 ~~~~~~~~~~~~~v~~~ 351 (358)
.... ..+..+|+++.
T Consensus 312 ~~~~--~~g~~~~~~~~ 326 (375)
T 2eh6_A 312 GKVK--GRGLMLGLELE 326 (375)
T ss_dssp SEEE--EETTEEEEECS
T ss_pred CCce--EEEEEEEEEEc
Confidence 4333 34567888764
No 193
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.75 E-value=1.7e-17 Score=158.55 Aligned_cols=295 Identities=13% Similarity=0.004 Sum_probs=164.8
Q ss_pred ccccchHHHHHHHHHHHHhhcceeEeccCCC-----CCHHHHHHHhcccc-cC--CCCCCCCCCCCCCchhHHHHHHHHH
Q 018318 12 LETVDPEIHDLIEKEKRRQCRGIELIASENF-----TSFAVIEALGSALT-NK--YSEGMPGNRYYGGNEFIDEIENLCR 83 (358)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~-----~~~~V~~a~~~~~~-~~--~~~g~~~~~~~~~~~~~~~le~~~~ 83 (358)
+......++....+... ....+.|..+.+. +++.+.+++.+.+. .. ...+|+.. ....++ |
T Consensus 14 l~~~~~~~~~~~~~l~~-~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~------~G~~~l----r 82 (422)
T 3d6k_A 14 LAQVREEVTAKYAELKA-KNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGL------LGIADI----R 82 (422)
T ss_dssp ----CHHHHHHHHHHHH-TTCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCS------SCCHHH----H
T ss_pred HHhhHHHHHHHHHHHhc-cCCeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCC------CCCHHH----H
Confidence 33334444444443322 2235666666552 34567776654421 11 11133321 222344 4
Q ss_pred HHHHHhcCCCCCCCCccccccCC-hHHH--HHHHHhhcCC------------CCeEEEecCCCCccccccccccCCcccc
Q 018318 84 SRALQTFHLDPTQWGVNVQPYSG-SPAN--FAAYTAVLEP------------HDRIMGLDLPSGGHLTHGYYTSGGKKIS 148 (358)
Q Consensus 84 ~~la~~~g~~~~~~~~~v~~~sG-t~a~--~~~l~a~~~~------------gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 148 (358)
+.++++++++++ .|++++| ++++ ..++.++.++ +|+|++..|.|.++.. .++
T Consensus 83 ~~ia~~~~~~~~----~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~---------~~~ 149 (422)
T 3d6k_A 83 ELWAEALGLPAD----LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFT---------ITE 149 (422)
T ss_dssp HHHHHHHTCCGG----GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH---------HHH
T ss_pred HHHHHHhCCChh----HEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHH---------HHH
Confidence 778888898764 3555665 4576 4556666655 3479999998876531 234
Q ss_pred cccceeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEE-EcCCCCC--CccchH---HHHHHHH-HhCCEEEEechhhh-
Q 018318 149 ATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLII-CGGSAYP--RDWDYA---RFRAVAD-KCGALLLCDMAHIS- 220 (358)
Q Consensus 149 ~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~-~~~~~~~--~~~~l~---~i~~la~-~~g~~lvvD~a~~~- 220 (358)
..|..+ ++++.++ + .+|++++++++++.++++|+ +++++|| ...+.+ +|.++|+ +||+++|+|++|+.
T Consensus 150 ~~g~~~--~~v~~~~-~-g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~ 225 (422)
T 3d6k_A 150 HFGFEM--INVPMTD-E-GPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALH 225 (422)
T ss_dssp HHTCEE--EEEEEET-T-EECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTC
T ss_pred HcCCEE--EecCCCC-C-CCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCcccc
Confidence 456544 4444443 3 39999999999755678887 5667765 455554 8888888 99999999999863
Q ss_pred hhhhccccCCCC-------C--cccEEEecCCcc-CCCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCC
Q 018318 221 GLVAAQEAANPF-------E--YCHIVTTTTHKS-LRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGG 290 (358)
Q Consensus 221 g~~~~~~~~~~~-------~--~~d~~~~s~~K~-l~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (358)
++...+....++ + +.++++.|++|+ ++|.+.|++++++ ++.+.+........ .+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~---------------~l~~~l~~~~~~~~-~~ 289 (422)
T 3d6k_A 226 TLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSK---------------ENIEWYASHANVRG-IG 289 (422)
T ss_dssp BSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCH---------------HHHHHHHHHHHHHC-SC
T ss_pred ccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCH---------------HHHHHHHHHHHhhc-CC
Confidence 343222111122 1 456889999996 3566789999876 45554443221111 12
Q ss_pred CChhHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHhh----CC-ceeeeCCCcceEEEEEcC
Q 018318 291 PHNHQIGALAVALKQAS--TPAFKAYAKQVKANAVALGNYLTG----KG-YSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 291 ~~~~~~~al~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~----~G-~~~~~~~~~~~~~~v~~~ 351 (358)
.+....+++..++.... ...++...+++.++++++.+.|.+ .| +++.. +..++.+|+++.
T Consensus 290 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~-p~~g~~~~~~~~ 356 (422)
T 3d6k_A 290 PNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTS-PTGGYFISVDVV 356 (422)
T ss_dssp CCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECC-CSBSSCEEEEES
T ss_pred CCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeC-CCcceEEEEECC
Confidence 23333333333332100 012234445555667777666654 44 56543 456778999875
No 194
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.74 E-value=1.1e-16 Score=152.26 Aligned_cols=306 Identities=15% Similarity=0.145 Sum_probs=178.6
Q ss_pred ccccccchHHHHHHHHHHHHh--hcceeEeccC----C---CCCHHHHHHHhccc-ccCCCCCCCCCCCCCCchhHHHHH
Q 018318 10 SSLETVDPEIHDLIEKEKRRQ--CRGIELIASE----N---FTSFAVIEALGSAL-TNKYSEGMPGNRYYGGNEFIDEIE 79 (358)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~--~~~~~l~a~~----~---~~~~~V~~a~~~~~-~~~~~~g~~~~~~~~~~~~~~~le 79 (358)
.+++.++++.+..+.+..+.. .+.|+|..+. + ++++.|.+++. .+ ......+|+.. .|. .+|.
T Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~---~G~---~~lr 78 (405)
T 3k7y_A 6 SSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLG---NGT---EDFS 78 (405)
T ss_dssp GGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTT---SSC---HHHH
T ss_pred hcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCC---CCc---HHHH
Confidence 577888888666555544433 2457777653 2 35788888865 22 11111234332 232 3454
Q ss_pred HHHHHHHHHhcCCCC-CCCCc-cccccCChHHHHHHHHhhcC--CCCeEEEecCCCCccccccccccCCcccccccceeE
Q 018318 80 NLCRSRALQTFHLDP-TQWGV-NVQPYSGSPANFAAYTAVLE--PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFE 155 (358)
Q Consensus 80 ~~~~~~la~~~g~~~-~~~~~-~v~~~sGt~a~~~~l~a~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 155 (358)
+.+.+++....+... ++. . .+.+++|+.|+..++.+++. | |+|++..|.|.++.. .++..|+.+.
T Consensus 79 ~aia~~~~~~~~~~~~~~~-i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~---------~~~~~g~~~~ 147 (405)
T 3k7y_A 79 TLTQNLIFGNNSKYIEDKK-ICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVN---------MIESRGFNLK 147 (405)
T ss_dssp HHHHHHHHCSSCTTTTTTC-EEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHH---------HHHTTTCEEE
T ss_pred HHHHHHHcCCCCccccccc-eEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHH---------HHHHcCCeEE
Confidence 455566654444321 111 1 13444556799999888877 8 999999998876542 2355676544
Q ss_pred EeecccCCCCCCCCHHHHHHHHhhc-CCcEEEEcCC-CCCC--c---cchHHHHHHHHHhCCEEEEechhhhhhhhcccc
Q 018318 156 SLPYKVNSSTGYIDYDKLEEKALDF-RPKLIICGGS-AYPR--D---WDYARFRAVADKCGALLLCDMAHISGLVAAQEA 228 (358)
Q Consensus 156 ~~~~~~~~~~~~id~~~l~~~l~~~-~~~~v~~~~~-~~~~--~---~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~ 228 (358)
.+++. +++++.+|++++++++.+. ++++++++.+ +||+ . ..+++|+++|++||+++|+|+++ .++.+.+..
T Consensus 148 ~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y-~~l~~~~~~ 225 (405)
T 3k7y_A 148 YINFF-DYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAY-QGFGHTNLE 225 (405)
T ss_dssp EECCE-ETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESC-TTTSSSSTT
T ss_pred EEecc-ccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCc-ccccCCCcc
Confidence 44431 3335789999999999753 4577777654 6763 3 35778999999999999999994 455432100
Q ss_pred ----C-CCC-C--cccEEEecCCccC--CCCCeeEEEEe--CCCCCCCCCCCCCccccHHHHh----hhhcCCCCcCCCC
Q 018318 229 ----A-NPF-E--YCHIVTTTTHKSL--RGPRAGMIFYR--KGPKPPKKGQPEGAVYDFEDKI----NFAVFPSLQGGPH 292 (358)
Q Consensus 229 ----~-~~~-~--~~d~~~~s~~K~l--~g~~gG~i~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 292 (358)
. ..+ . .--+++.|++|++ +|.|.|++++. ++ ++.+.+ ....... .+.++
T Consensus 226 ~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~--------------~~~~~~~~~l~~~~~~~-~~~~~ 290 (405)
T 3k7y_A 226 EDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQ--------------EEKKIVFNNLCFIVRKF-YSSPV 290 (405)
T ss_dssp GGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSH--------------HHHHHHHHHHHHHHHTT-TSSCC
T ss_pred cchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCH--------------HHHHHHHHHHHHHHhcc-cCCCc
Confidence 0 001 1 1237789999986 58899998752 32 333222 2211111 12222
Q ss_pred hhHHHHHHHHHHHh--c---cHHHHHHHHHHHHHHHHHHHHHh----hCC----ceeeeCCCcceEEEEEcC
Q 018318 293 NHQIGALAVALKQA--S---TPAFKAYAKQVKANAVALGNYLT----GKG----YSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 293 ~~~~~al~~al~~~--~---~~~~~~~~~~~~~~~~~l~~~L~----~~G----~~~~~~~~~~~~~~v~~~ 351 (358)
.....+...++..- . .+++..+++++.++++++.+.|+ +.| +++.. +..+..+|+.+.
T Consensus 291 ~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~-p~gg~f~~~~l~ 361 (405)
T 3k7y_A 291 IHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYK-KQRGLFSFVPLL 361 (405)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGS-SCCSSEEECGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcccc-CCceEEEecCCC
Confidence 22222223333210 0 12245566778889999999999 776 45554 466777887653
No 195
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.74 E-value=3.4e-17 Score=154.87 Aligned_cols=266 Identities=15% Similarity=0.058 Sum_probs=159.6
Q ss_pred CCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc--C
Q 018318 42 FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL--E 119 (358)
Q Consensus 42 ~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~--~ 119 (358)
+.+|.|.+++.+.+... . ..+.. + ..+...++ ++++++++|+..+ ..+++++|++|+..++.++. .
T Consensus 61 ~~~~~v~~a~~~~~~~~-~--~~~~~-~-~~~~~~~l----~~~la~~~~~~~~---~v~~~~gg~~a~~~al~~~~~~~ 128 (395)
T 1vef_A 61 HGNPEVVEAVKRQAETL-M--AMPQT-L-PTPMRGEF----YRTLTAILPPELN---RVFPVNSGTEANEAALKFARAHT 128 (395)
T ss_dssp BTCHHHHHHHHHHHHHC-C--CCCTT-S-CCHHHHHH----HHHHHHTSCTTEE---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-C--CCccc-c-CCHHHHHH----HHHHHHhcCCCcC---EEEEcCcHHHHHHHHHHHHHHHh
Confidence 46899999998877532 1 11111 2 22334444 4889999987543 23556677889999988763 6
Q ss_pred CCCeEEEecCCCCccccccccccCCcccccccceeE---EeecccCC-CCCCCCHHHHHHHHhhcCCcEEEEcCCC--CC
Q 018318 120 PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFE---SLPYKVNS-STGYIDYDKLEEKALDFRPKLIICGGSA--YP 193 (358)
Q Consensus 120 ~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~-~~~~id~~~l~~~l~~~~~~~v~~~~~~--~~ 193 (358)
+||+|+++++.|.+.... .+...|.... ..++..+- .-...|++++++++++ ++++|+++.++ +|
T Consensus 129 ~~~~vi~~~~~y~~~~~~--------~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG 199 (395)
T 1vef_A 129 GRKKFVAAMRGFSGRTMG--------SLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEGG 199 (395)
T ss_dssp SCCEEEEETTCCCCSSHH--------HHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTT
T ss_pred CCCeEEEEcCCcCCCchh--------hhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhcc-CEEEEEEeCccCCCC
Confidence 789999988876543211 1122332100 01110000 0013689999999974 68888776543 35
Q ss_pred Cccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C-cccEEEecCCccCCC-CCeeEEEEeCCCCCCC
Q 018318 194 RDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLRG-PRAGMIFYRKGPKPPK 264 (358)
Q Consensus 194 ~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~-~~d~~~~s~~K~l~g-~~gG~i~~~~~~~~~~ 264 (358)
...+ +++|.++|++||+++|+|++|+ |+...+. ..++ + .+|++ |+||++++ .+.|++++++
T Consensus 200 ~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~~~~~g~-~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~------ 269 (395)
T 1vef_A 200 VRPATPEFLRAAREITQEKGALLILDEIQT-GMGRTGK-RFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMRE------ 269 (395)
T ss_dssp SEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSS-SSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEH------
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCCc-hhHhhhcCCCCCEE--EEcccccCCCceEEEEehH------
Confidence 5566 9999999999999999999987 5432221 1111 2 46866 66999854 4569998887
Q ss_pred CCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCceeee-CCCcc
Q 018318 265 KGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT-GGTEN 343 (358)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~-~~~~~ 343 (358)
++.+.+....... ..+++....+++.++++.+.. +...++..++++++.+.|++.+.++.. ....+
T Consensus 270 ---------~~~~~l~~~~~~~-~~~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g 336 (395)
T 1vef_A 270 ---------EVARSMPKGGHGT-TFGGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREVRGMG 336 (395)
T ss_dssp ---------HHHHTSCTTSSCC-SSTTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEET
T ss_pred ---------HHHhhhccCCcCC-CcCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEE
Confidence 3444443311111 112333444444555655421 346778888999999999887653221 11345
Q ss_pred eEEEEEcC
Q 018318 344 HLVLWDLR 351 (358)
Q Consensus 344 ~~~~v~~~ 351 (358)
+.+|+++.
T Consensus 337 ~~~~~~~~ 344 (395)
T 1vef_A 337 LMVGLELK 344 (395)
T ss_dssp TEEEEEES
T ss_pred EEEEEEEc
Confidence 67888764
No 196
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.74 E-value=5.6e-17 Score=156.35 Aligned_cols=304 Identities=13% Similarity=0.122 Sum_probs=166.7
Q ss_pred ccccccchHHHHHHHHHHHHhh--cceeEecc-------CCCCCHHHHHHHhccc--ccCCCCCCCCCCCCCCchhHHHH
Q 018318 10 SSLETVDPEIHDLIEKEKRRQC--RGIELIAS-------ENFTSFAVIEALGSAL--TNKYSEGMPGNRYYGGNEFIDEI 78 (358)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~--~~~~l~a~-------~~~~~~~V~~a~~~~~--~~~~~~g~~~~~~~~~~~~~~~l 78 (358)
.+++..+++.+..+.+..+... ..+.|..+ +.++.++|.+++.... ......+|... .| ..++
T Consensus 26 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~---~G---~~~l 99 (448)
T 3meb_A 26 SGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPV---AG---FPLF 99 (448)
T ss_dssp TTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCT---TC---CHHH
T ss_pred hcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCC---cc---hHHH
Confidence 3455556654333333323232 23665543 2245688888855433 11111223221 12 2344
Q ss_pred HHHHHHHHHHhc-CCC-----CCCCCcccc--ccCChHHHHH--HHHhhcCCCCeEEEecCCCCccccccccccCCcccc
Q 018318 79 ENLCRSRALQTF-HLD-----PTQWGVNVQ--PYSGSPANFA--AYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS 148 (358)
Q Consensus 79 e~~~~~~la~~~-g~~-----~~~~~~~v~--~~sGt~a~~~--~l~a~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 148 (358)
. +.+++++ |.+ +++ .++ +++|++|+.. .+.+++.|||+|+++.|.|.++.. .+.
T Consensus 100 r----~~ia~~l~g~~~~~~~~~~---i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~---------~~~ 163 (448)
T 3meb_A 100 L----EAAQFLMFGKDSKAAQEGR---IASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYG---------IYD 163 (448)
T ss_dssp H----HHHHHHHHCTTCHHHHTTC---EEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHH---------HHH
T ss_pred H----HHHHHHhcCCCccccCcCc---EEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHH---------HHH
Confidence 3 4555554 776 332 233 5667788876 556678899999999999876642 234
Q ss_pred ----cccceeEEeeccc-CCC-CCCCCHHHHHHHHhhc--CCcEEEEcCCCCC--Ccc---chHHHHHHHHHhCCEEEEe
Q 018318 149 ----ATSIYFESLPYKV-NSS-TGYIDYDKLEEKALDF--RPKLIICGGSAYP--RDW---DYARFRAVADKCGALLLCD 215 (358)
Q Consensus 149 ----~~g~~~~~~~~~~-~~~-~~~id~~~l~~~l~~~--~~~~v~~~~~~~~--~~~---~l~~i~~la~~~g~~lvvD 215 (358)
..|..+ +.+++ +.+ ++.+|++++++++++. ++++++++.++|| ... ++++|+++|++||+++++|
T Consensus 164 ~~~~~~G~~v--~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~D 241 (448)
T 3meb_A 164 KVFNKLKVPY--KEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFD 241 (448)
T ss_dssp HHHCTTTSCC--EEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred hhHHhCCCeE--EEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 556544 44444 433 4789999999999752 3566677777776 333 4667999999999999999
Q ss_pred chhhhhhhhcccc--CCCC----C-cc-cEEEecCCccCC--CCCeeEE--EE--------eCCCCCCCCCCCCCccccH
Q 018318 216 MAHISGLVAAQEA--ANPF----E-YC-HIVTTTTHKSLR--GPRAGMI--FY--------RKGPKPPKKGQPEGAVYDF 275 (358)
Q Consensus 216 ~a~~~g~~~~~~~--~~~~----~-~~-d~~~~s~~K~l~--g~~gG~i--~~--------~~~~~~~~~~~~~~~~~~~ 275 (358)
+++. ++...+.. ...+ + +. .+++.|+||.++ |.+.|++ ++ +++. ... ++
T Consensus 242 eay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~--------~~~--~l 310 (448)
T 3meb_A 242 SAYQ-GFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKA--------LSA--AM 310 (448)
T ss_dssp ESCT-TTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHH--------HHH--HH
T ss_pred cccc-cccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHH--------HHH--HH
Confidence 9954 33322100 0001 1 22 377899999874 5556887 55 3310 000 12
Q ss_pred HHHhhhhcCCCCcCCCChhHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHHHhhCCce---------eeeCCC
Q 018318 276 EDKINFAVFPSLQGGPHNHQIGALAVALKQAS-----TPAFKAYAKQVKANAVALGNYLTGKGYS---------LVTGGT 341 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~G~~---------~~~~~~ 341 (358)
.+.+........ .+++.....+...++.... .+.++..++++.++++++.+.|++.|++ +.. +.
T Consensus 311 ~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~-~~ 388 (448)
T 3meb_A 311 VSGMTLQIRKTW-SMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHIL-TA 388 (448)
T ss_dssp HHHHHHHHHTTT-SSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHH-HC
T ss_pred HHHHHHHHhccc-CCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeC-CC
Confidence 222322111111 1223232222223322100 0234666788889999999999987533 222 34
Q ss_pred cceEEEEEc
Q 018318 342 ENHLVLWDL 350 (358)
Q Consensus 342 ~~~~~~v~~ 350 (358)
.+..+|+++
T Consensus 389 ~g~~~~~~~ 397 (448)
T 3meb_A 389 IGMFTFTGL 397 (448)
T ss_dssp CSSEEECCC
T ss_pred ceEEEecCC
Confidence 555666654
No 197
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.73 E-value=1.1e-16 Score=153.85 Aligned_cols=259 Identities=16% Similarity=0.070 Sum_probs=157.1
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc----
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL---- 118 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~---- 118 (358)
.+|+|.+|+.+.+.... +.+..+ ..+...+++ +++++++|.+. .++++||++|+..++.++.
T Consensus 93 ~~p~v~~Ai~~~~~~~~---~~~~~~--~~~~~~~l~----~~la~~~g~~~-----v~~~~sGseA~~~al~~~~~~~~ 158 (439)
T 2oat_A 93 CHPKIVNALKSQVDKLT---LTSRAF--YNNVLGEYE----EYITKLFNYHK-----VLPMNTGVEAGETACKLARKWGY 158 (439)
T ss_dssp TCHHHHHHHHHHHTTCS---CCCTTS--EESSHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC---cccCcc--CCHHHHHHH----HHHHHhcCCCE-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 57999999988875421 111112 123444555 77888888543 3666788999999988764
Q ss_pred -----CCC-CeEEEecCCCCccccccccccCCcccccccce----------eEEeecccCCCCCCCCHHHHHHHHhhcCC
Q 018318 119 -----EPH-DRIMGLDLPSGGHLTHGYYTSGGKKISATSIY----------FESLPYKVNSSTGYIDYDKLEEKALDFRP 182 (358)
Q Consensus 119 -----~~g-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~id~~~l~~~l~~~~~ 182 (358)
.+| |+|++..+.|.+.... .+...+.. ..+..++ ..|++++++++++.++
T Consensus 159 ~~~g~~~g~~~vi~~~~~yhg~~~~--------~~~~~g~~~~~~~~~p~~~~v~~~~------~~d~~~le~~l~~~~~ 224 (439)
T 2oat_A 159 TVKGIQKYKAKIVFAAGNFWGRTLS--------AISSSTDPTSYDGFGPFMPGFDIIP------YNDLPALERALQDPNV 224 (439)
T ss_dssp HTTCCCTTCCEEEEETTCCCCSSHH--------HHTTCCCHHHHTTSCSCCTTEEEEC------SSCHHHHHHHTTSTTE
T ss_pred hccCCCCCCCeEEEEcCCCCCCCHh--------HhhcCCChhcccCCCCCCCCeEEeC------CCCHHHHHHHhCCCCE
Confidence 367 8999998876553211 11122200 0122222 2489999999953466
Q ss_pred cEEEEcCCC--CCCcc----chHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEecCCccCCC--CCe
Q 018318 183 KLIICGGSA--YPRDW----DYARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLRG--PRA 251 (358)
Q Consensus 183 ~~v~~~~~~--~~~~~----~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s~~K~l~g--~~g 251 (358)
++|+++..+ .|... ++++|.++|++||+++|+|++| .|+...+... ...+ ..|++ |++|+|++ .++
T Consensus 225 ~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~~ 301 (439)
T 2oat_A 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ-TGLARTGRWLAVDYENVRPDIV--LLGKALSGGLYPV 301 (439)
T ss_dssp EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCC
T ss_pred EEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCCccCCcchhHHHhCCCCcEE--EecccccCCCCCe
Confidence 777766432 34333 7999999999999999999998 4653322111 0112 46876 67799864 478
Q ss_pred eEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 018318 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (358)
Q Consensus 252 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 331 (358)
|+++++++ +.+.+.......+. +.+....++..++++.+.. +...++..+++++|++.|++
T Consensus 302 G~v~~~~~---------------~~~~l~~~~~~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~ 362 (439)
T 2oat_A 302 SAVLCDDD---------------IMLTIKPGEHGSTY-GGNPLGCRVAIAALEVLEE---ENLAENADKLGIILRNELMK 362 (439)
T ss_dssp EEEEECHH---------------HHTTSCTTSSCCSS-TTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECHH---------------HHhccCCCCcccCC-CcCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH
Confidence 99999873 44444322111111 2233344444555655432 25577888999999999998
Q ss_pred CCceeeeC-CCcceEEEEEcC
Q 018318 332 KGYSLVTG-GTENHLVLWDLR 351 (358)
Q Consensus 332 ~G~~~~~~-~~~~~~~~v~~~ 351 (358)
.++++... ...+..+++++.
T Consensus 363 l~~~~~~~~~~~g~~~~v~l~ 383 (439)
T 2oat_A 363 LPSDVVTAVRGKGLLNAIVIK 383 (439)
T ss_dssp SCTTTEEEEEEETTEEEEEEC
T ss_pred hcCCCcEEEEeeeeEEEEEEe
Confidence 76553211 134556777764
No 198
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.73 E-value=1.2e-16 Score=151.52 Aligned_cols=255 Identities=18% Similarity=0.146 Sum_probs=156.2
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcC----
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE---- 119 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~---- 119 (358)
+|.|.+++.+.+..... .+..+ ..+...+++ +++++++|.+. .+++++|++|+..++.+++.
T Consensus 57 ~p~v~~a~~~~~~~~~~---~~~~~--~~~~~~~l~----~~la~~~~~~~-----v~~~~gg~~a~~~al~~~~~~~~~ 122 (406)
T 4adb_A 57 HPELREALNEQASKFWH---TGNGY--TNEPVLRLA----KKLIDATFADR-----VFFCNSGAEANEAALKLARKFAHD 122 (406)
T ss_dssp CHHHHHHHHHHHTTCSC---CCTTS--CCHHHHHHH----HHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccc---ccCCc--CCHHHHHHH----HHHHhhCCCCe-----EEEeCcHHHHHHHHHHHHHHHHHh
Confidence 89999999887754221 11111 223444444 88999998763 36667788999999988764
Q ss_pred ---CC-CeEEEecCCCCccccccccccCCcccccccce----------eEEeecccCCCCCCCCHHHHHHHHhhcCCcEE
Q 018318 120 ---PH-DRIMGLDLPSGGHLTHGYYTSGGKKISATSIY----------FESLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185 (358)
Q Consensus 120 ---~g-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v 185 (358)
+| |+|++..+.|.+..... ....+.. .....++ ..|++++++++++ ++++|
T Consensus 123 ~~~~g~~~vi~~~~~y~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~-~~~~v 187 (406)
T 4adb_A 123 RYGSHKSGIVAFKNAFHGRTLFT--------VSAGGQPAYSQDFAPLPADIRHAA------YNDINSASALIDD-STCAV 187 (406)
T ss_dssp HTCTTCCEEEEETTCCCCSSHHH--------HHHSSCGGGTGGGCSCCSSEEEEC------TTCHHHHHTTCST-TEEEE
T ss_pred cCCCCCcEEEEECCCcCCCcHHH--------hhccCCccccccCCCCCCCceEeC------CCcHHHHHHHhcC-CeEEE
Confidence 66 99999998876542111 1111100 0111111 2589999998864 78888
Q ss_pred EEcCCCCC-------CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C-cccEEEecCCccCC-CCCeeE
Q 018318 186 ICGGSAYP-------RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLR-GPRAGM 253 (358)
Q Consensus 186 ~~~~~~~~-------~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~-~~d~~~~s~~K~l~-g~~gG~ 253 (358)
+++ |++| ...++++|.++|++||+++|+|++|+ |+...+.. ... + ..|++ +++|+++ |.++|+
T Consensus 188 ~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~-~~~~~~~~~~d~~--t~sK~~~~G~r~G~ 262 (406)
T 4adb_A 188 IVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT-GVGRTGEL-YAYMHYGVTPDLL--TTAKALGGGFPVGA 262 (406)
T ss_dssp EEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSS-SHHHHHTCCCSEE--EECGGGGTTSCCEE
T ss_pred EEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchh-HHHHhcCCCCCEE--EechhhcCCCCeEE
Confidence 887 6555 22468999999999999999999986 54332211 111 2 45777 4599884 456799
Q ss_pred EEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCC
Q 018318 254 IFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKG 333 (358)
Q Consensus 254 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G 333 (358)
+++++ ++.+.+......... +.+....++..++++.+.. +...++.+++++++++.|++.+
T Consensus 263 ~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~ 323 (406)
T 4adb_A 263 LLATE---------------ECARVMTVGTHGTTY-GGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTIN 323 (406)
T ss_dssp EEECH---------------HHHHTCCTTSSCCSS-TTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcH---------------HHHhhhccCCcCCCC-CCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHH
Confidence 88877 455544432222211 2334444454555655432 4667788888999999888753
Q ss_pred c--eeeeC-CCcceEEEEEcC
Q 018318 334 Y--SLVTG-GTENHLVLWDLR 351 (358)
Q Consensus 334 ~--~~~~~-~~~~~~~~v~~~ 351 (358)
. .+... ...+..+++.+.
T Consensus 324 ~~~~~~~~~~~~g~~~~~~~~ 344 (406)
T 4adb_A 324 HRYGLFSEVRGLGLLIGCVLN 344 (406)
T ss_dssp HHHCCEEEEEEETTEEEEEEC
T ss_pred HhCCCceEEEEEEEEEEEEEe
Confidence 2 11111 123455666654
No 199
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.72 E-value=6.5e-16 Score=147.85 Aligned_cols=274 Identities=14% Similarity=-0.000 Sum_probs=157.3
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc---C
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL---E 119 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~---~ 119 (358)
.+|+|.+++.+.+..... ++...+ ..+...++ +++++++++++.++ .+++++|++|+..++.++. +
T Consensus 60 ~~p~v~~a~~~~~~~~~~--~~~~~~--~~~~~~~l----~~~la~~~~~~~~~---v~~~~ggtea~~~ai~~~~~~~~ 128 (429)
T 1s0a_A 60 NHPQLNAAMKSQIDAMSH--VMFGGI--THAPAIEL----CRKLVAMTPQPLEC---VFLADSGSVAVEVAMKMALQYWQ 128 (429)
T ss_dssp SCHHHHHHHHHHHHHCSC--CCCSSE--ECHHHHHH----HHHHHHHSCTTCCE---EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccc--cccccc--CCHHHHHH----HHHHHHhCCCCCCE---EEEeCCHHHHHHHHHHHHHHHhc
Confidence 489999999888754321 111111 11223333 46799999876542 3555667889999887653 2
Q ss_pred ----CCCeEEEecCCCCcccccccc-cc----CCcccccccceeEEeecccC---CCCCCCCHHHHHHHHhh--cCCcEE
Q 018318 120 ----PHDRIMGLDLPSGGHLTHGYY-TS----GGKKISATSIYFESLPYKVN---SSTGYIDYDKLEEKALD--FRPKLI 185 (358)
Q Consensus 120 ----~gd~Vl~~~~~~~~~~~~~~~-~~----~~~~~~~~g~~~~~~~~~~~---~~~~~id~~~l~~~l~~--~~~~~v 185 (358)
|||+|++..+.|.+....... .. ..........++..++++.+ ...+.+|++++++++++ .++++|
T Consensus 129 ~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v 208 (429)
T 1s0a_A 129 AKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAV 208 (429)
T ss_dssp HHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEE
T ss_pred ccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEE
Confidence 699999999876553210000 00 00000000012233433211 01236899999999975 245666
Q ss_pred EEcCC-CC--CCccc----hHHHHHHHHHhCCEEEEechhhhhhhhcccc-CCC-CC-cccEEEecCCccCCC--CCeeE
Q 018318 186 ICGGS-AY--PRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEA-ANP-FE-YCHIVTTTTHKSLRG--PRAGM 253 (358)
Q Consensus 186 ~~~~~-~~--~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~-~~~-~~-~~d~~~~s~~K~l~g--~~gG~ 253 (358)
+++.+ ++ |...+ +++|.++|++||+++|+|++|+ |+...+.. ... ++ ..|++ |++|+|+| .+.|+
T Consensus 209 i~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~G~~~iG~ 285 (429)
T 1s0a_A 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT-GFGRTGKLFACEHAEIAPDIL--CLGKALTGGTMTLSA 285 (429)
T ss_dssp EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTSSSCCEE
T ss_pred EEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-CCcccchHHHhhhcCCCCCEE--EecccccCCCccceE
Confidence 66644 33 44455 9999999999999999999986 33221211 001 12 46776 45698865 46699
Q ss_pred EEEeCCCCCCCCCCCCCccccHHHHhhhhc-----CCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 018318 254 IFYRKGPKPPKKGQPEGAVYDFEDKINFAV-----FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNY 328 (358)
Q Consensus 254 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (358)
+++++ ++.+.+.... ...+ .+.+...+++..++++.+..+ .+.++..++++++++.
T Consensus 286 ~~~~~---------------~~~~~l~~~~~~~~~~~~t-~~~n~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~ 346 (429)
T 1s0a_A 286 TLTTR---------------EVAETISNGEAGCFMHGPT-FMGNPLACAAANASLAILESG---DWQQQVADIEVQLREQ 346 (429)
T ss_dssp EEECH---------------HHHHHHHTSTTSSCSCCCT-TTTCHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred EEeCH---------------HHHHHhhcCCCcccccCCC-CCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 98877 3545444310 1111 123445555556667655432 4567778889999999
Q ss_pred HhhC----CceeeeCCCcceEEEEEcC
Q 018318 329 LTGK----GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 329 L~~~----G~~~~~~~~~~~~~~v~~~ 351 (358)
|++. ++.... ..+..+|+++.
T Consensus 347 L~~l~~~~~~~~~~--~~g~~~~~~~~ 371 (429)
T 1s0a_A 347 LAPARDAEMVADVR--VLGAIGVVETT 371 (429)
T ss_dssp HGGGGGCTTEEEEE--EETTEEEEEES
T ss_pred HHHHhcCCCEEEEE--EeeEEEEEEEC
Confidence 9875 343232 23446788764
No 200
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.71 E-value=3.2e-16 Score=150.40 Aligned_cols=260 Identities=14% Similarity=0.067 Sum_probs=151.3
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc----
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL---- 118 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~---- 118 (358)
.+|.|.+|+.+.+.... +.+..+ ..+...+++ +++++++|.+. .++++||++|+..++.++.
T Consensus 82 ~~p~v~~ai~~~~~~~~---~~~~~~--~~~~~~~l~----~~la~~~g~~~-----v~~~~sGseA~~~al~~a~~~~~ 147 (433)
T 1z7d_A 82 CHPNILNAMINQAKNLT---ICSRAF--FSVPLGICE----RYLTNLLGYDK-----VLMMNTGAEANETAYKLCRKWGY 147 (433)
T ss_dssp TCHHHHHHHHHHHTTCS---CCCTTS--EEHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC---CccCCc--CCHHHHHHH----HHHHhhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 57999999988775321 111111 223344444 77888888543 3667788999999988753
Q ss_pred -----CCC-CeEEEecCCCCccccccccccCCcccccccce----------eEEeecccCCCCCCCCHHHHHHHHhhcCC
Q 018318 119 -----EPH-DRIMGLDLPSGGHLTHGYYTSGGKKISATSIY----------FESLPYKVNSSTGYIDYDKLEEKALDFRP 182 (358)
Q Consensus 119 -----~~g-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~id~~~l~~~l~~~~~ 182 (358)
.+| |+|++..+.|.+.... .+...+.. ..+..++ ..|+++++++++..++
T Consensus 148 ~~~g~~~gr~~vi~~~~~yhg~~~~--------~~~~~g~~~~~~~~~p~~~~v~~~~------~~d~~~le~~l~~~~~ 213 (433)
T 1z7d_A 148 EVKKIPENMAKIVVCKNNFSGRTLG--------CISASTTKKCTSNFGPFAPQFSKVP------YDDLEALEEELKDPNV 213 (433)
T ss_dssp HTSCCCTTCCEEEEETTC----------------------------------CEEEEC------TTCHHHHHHHHTSTTE
T ss_pred hccCCCCCCCeEEEEeCCcCCcchh--------hhcccCCccccccCCCCCCCeEEeC------CCCHHHHHHHhCCCCE
Confidence 467 9999999876553211 11122200 0112222 2489999999953467
Q ss_pred cEEEEcCCC--CCCcc----chHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEecCCccCCC--CCe
Q 018318 183 KLIICGGSA--YPRDW----DYARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLRG--PRA 251 (358)
Q Consensus 183 ~~v~~~~~~--~~~~~----~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s~~K~l~g--~~g 251 (358)
++|+++..+ .|... ++++|.++|++||+++|+|++|. |+...+... ..++ ..|++ |++|++++ .++
T Consensus 214 ~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~ 290 (433)
T 1z7d_A 214 CAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPI 290 (433)
T ss_dssp EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCC
T ss_pred EEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCcCCcchhhHhcCCCCCEE--EECccccCCCCCe
Confidence 777776432 34333 79999999999999999999985 653322110 0112 46776 67799854 478
Q ss_pred eEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 018318 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (358)
Q Consensus 252 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 331 (358)
|+++++++ +.+.+.......+. +.+....++..++++.+.. +...++..++.+++++.|++
T Consensus 291 G~v~~~~~---------------~~~~l~~~~~~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~ 351 (433)
T 1z7d_A 291 SAVLANDD---------------IMLVIKPGEHGSTY-GGNPLAASICVEALNVLIN---EKLCENAEKLGGPFLENLKR 351 (433)
T ss_dssp EEEEECHH---------------HHTTCCTTCCCCTT-TTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECHH---------------HHhhhccccccccC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHH
Confidence 99998773 44433321111111 2233444444555655432 24567788889999999987
Q ss_pred C--CceeeeC-CCcceEEEEEcCC
Q 018318 332 K--GYSLVTG-GTENHLVLWDLRP 352 (358)
Q Consensus 332 ~--G~~~~~~-~~~~~~~~v~~~~ 352 (358)
. ++++... ...+..+++++..
T Consensus 352 l~~~~~~~~~~~~~g~~~~i~~~~ 375 (433)
T 1z7d_A 352 ELKDSKIVRDVRGKGLLCAIEFKN 375 (433)
T ss_dssp HHTTCTTEEEEEEETTEEEEEECT
T ss_pred HHHhCCCeEEEEeeeeEEEEEEcc
Confidence 5 5532210 1345567887653
No 201
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.70 E-value=5.1e-16 Score=149.50 Aligned_cols=267 Identities=14% Similarity=0.025 Sum_probs=156.6
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCC-CCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcC--
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRY-YGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE-- 119 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~-~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~-- 119 (358)
.+|+|.+|+.+.+.. .. + .++ ....+...++ +++++++++...+ ..+++++|++|+..++.++..
T Consensus 67 ~~~~v~~a~~~~~~~-~~--~--~~~~~~~~~~~~~l----~~~la~~~~~~~~---~v~~~~ggsea~~~al~~~~~~~ 134 (449)
T 3a8u_X 67 TRKEIQEAVAKQLST-LD--Y--SPGFQYGHPLSFQL----AEKITDLTPGNLN---HVFFTDSGSECALTAVKMVRAYW 134 (449)
T ss_dssp SCHHHHHHHHHHTTT-CS--C--CCSSSCCCHHHHHH----HHHHHTTSSTTEE---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-CC--C--ccccccCCHHHHHH----HHHHHHhCCCCCC---EEEEcCcHHHHHHHHHHHHHHHH
Confidence 379999999887753 21 1 111 1112333344 4788999876543 235566778899999887753
Q ss_pred ------CCCeEEEecCCCCccccccccccCCccccccc------------ceeEEeecccCCC-C-CCCC--------HH
Q 018318 120 ------PHDRIMGLDLPSGGHLTHGYYTSGGKKISATS------------IYFESLPYKVNSS-T-GYID--------YD 171 (358)
Q Consensus 120 ------~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g------------~~~~~~~~~~~~~-~-~~id--------~~ 171 (358)
+||+|++..+.|.+..... +...| .++..++++.+.. + ..+| ++
T Consensus 135 ~~~g~~~~~~vi~~~~~yhg~~~~~--------~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~ 206 (449)
T 3a8u_X 135 RLKGQATKTKMIGRARGYHGVNIAG--------TSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALAD 206 (449)
T ss_dssp HHTTCTTCCEEEEETTCCCCSSHHH--------HHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHH
T ss_pred HhcCCCCCCEEEEECCCcCCCChhh--------hhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHH
Confidence 6899999888876542110 11111 1123333321100 0 1246 99
Q ss_pred HHHHHHhhc---CCcEEEEcCCC--CCCccc----hHHHHHHHHHhCCEEEEechhh-hhhhhccccCCCC---C-cccE
Q 018318 172 KLEEKALDF---RPKLIICGGSA--YPRDWD----YARFRAVADKCGALLLCDMAHI-SGLVAAQEAANPF---E-YCHI 237 (358)
Q Consensus 172 ~l~~~l~~~---~~~~v~~~~~~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~-~g~~~~~~~~~~~---~-~~d~ 237 (358)
+++++++++ ++++|+++..+ .|...+ +++|.++|++||+++|+|++|. .|.. +.. ..+ + ..|+
T Consensus 207 ~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~--g~~-~~~~~~~~~~di 283 (449)
T 3a8u_X 207 ELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRT--GSM-FGADSFGVTPDL 283 (449)
T ss_dssp HHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT--SSS-SHHHHHTCCCSE
T ss_pred HHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc--Ccc-hhhhhcCCCCCE
Confidence 999999752 45666665432 455567 9999999999999999999984 4322 110 111 1 3576
Q ss_pred EEecCCccCCC--CCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhc--------CCCCcCCCChhHHHHHHHHHHHhc
Q 018318 238 VTTTTHKSLRG--PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAV--------FPSLQGGPHNHQIGALAVALKQAS 307 (358)
Q Consensus 238 ~~~s~~K~l~g--~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~al~~al~~~~ 307 (358)
+ |++|+|++ .+.|++++++ ++.+.+.... ......+.+....++..++++.+.
T Consensus 284 ~--s~sK~l~~G~~~~G~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~ 346 (449)
T 3a8u_X 284 M--CIAKQVTNGAIPMGAVIAST---------------EIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQ 346 (449)
T ss_dssp E--EECGGGGTTSSCCEEEEEEH---------------HHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHH
T ss_pred E--EEcccccCCCCceEEEEECH---------------HHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHH
Confidence 6 66799865 5678888876 3555444320 001111223344445455665543
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCC-ceeeeC-CCcceEEEEEcCC
Q 018318 308 TPAFKAYAKQVKANAVALGNYLTGKG-YSLVTG-GTENHLVLWDLRP 352 (358)
Q Consensus 308 ~~~~~~~~~~~~~~~~~l~~~L~~~G-~~~~~~-~~~~~~~~v~~~~ 352 (358)
. +.+.++++++.+++++.|++.+ +++... ...+..+|+++..
T Consensus 347 ~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~ 390 (449)
T 3a8u_X 347 K---ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAP 390 (449)
T ss_dssp H---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECC
T ss_pred h---cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEec
Confidence 2 2467788888999999998753 332210 1345678888753
No 202
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.69 E-value=7.6e-16 Score=146.96 Aligned_cols=268 Identities=14% Similarity=-0.003 Sum_probs=155.1
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHH---hhcC
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYT---AVLE 119 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~---a~~~ 119 (358)
.+|.|.+++.+.+.. .. .....+ ...+...++ +++++++++.+.++ ..+++++|++|+..++. ++.+
T Consensus 58 ~~~~v~~a~~~~~~~-~~--~~~~~~-~~~~~~~~l----~~~la~~~~~~~~~--~v~~~~g~~~a~~~~~~~a~~~~~ 127 (426)
T 1sff_A 58 LHPKVVAAVEAQLKK-LS--HTCFQV-LAYEPYLEL----CEIMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAATK 127 (426)
T ss_dssp TCHHHHHHHHHHTTT-CS--CCCTTT-EECHHHHHH----HHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHh-CC--Cccccc-cCCHHHHHH----HHHHHHhCCccccc--EEEEeCchHHHHHHHHHHHHHhhC
Confidence 589999999887743 21 111111 112333344 47899998322211 23555666789999887 5677
Q ss_pred CCCeEEEecCCCCccccccccccCCcccccccc-------------eeEEeecccCC--CCCCCCHHHHHHHHhh----c
Q 018318 120 PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI-------------YFESLPYKVNS--STGYIDYDKLEEKALD----F 180 (358)
Q Consensus 120 ~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~--~~~~id~~~l~~~l~~----~ 180 (358)
+| +|++..+.|.+..... +...|. ++..++++.+. .++.+|++++++++++ .
T Consensus 128 ~~-~vi~~~p~y~~~~~~~--------~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (426)
T 1sff_A 128 RS-GTIAFSGAYHGRTHYT--------LALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPE 198 (426)
T ss_dssp CC-EEEEETTCCCCSSHHH--------HHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGG
T ss_pred CC-eEEEECCCcCCCchHh--------hhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCC
Confidence 76 8888888776533110 111111 12334433210 1234799999999974 3
Q ss_pred CCcEEEEcC--CCCCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEecCCccCC-CCC
Q 018318 181 RPKLIICGG--SAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPR 250 (358)
Q Consensus 181 ~~~~v~~~~--~~~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s~~K~l~-g~~ 250 (358)
++++|+++. +++|...+ +++|.++|++||+++|+|++|+ |+...+... ...+ .+|++ |++|+++ |.+
T Consensus 199 ~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~di~--s~sK~~~~Glr 275 (426)
T 1sff_A 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLT--TFAKSIAGGFP 275 (426)
T ss_dssp GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEE--EECGGGGTSSC
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcccchhhhhhcCCCCCEE--EEcccccCCCc
Confidence 567777643 23454566 9999999999999999999987 654333211 0112 45665 6779985 344
Q ss_pred eeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh
Q 018318 251 AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLT 330 (358)
Q Consensus 251 gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 330 (358)
.|+++++++ +.+.+......... +.+....+++.++++.+.. ..+.+++.++++++++.|+
T Consensus 276 iG~~~~~~~---------------~~~~l~~~~~~~~~-~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~ 336 (426)
T 1sff_A 276 LAGVTGRAE---------------VMDAVAPGGLGGTY-AGNPIACVAALEVLKVFEQ---ENLLQKANDLGQKLKDGLL 336 (426)
T ss_dssp CEEEEEEHH---------------HHTTSCTTSBCCSS-SSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcHH---------------HHhhhccCCcCcCC-CCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHH
Confidence 599999873 44433321111111 2344445555566665432 2456778888888888887
Q ss_pred hCC--ceeee-CCCcceEEEEEcC
Q 018318 331 GKG--YSLVT-GGTENHLVLWDLR 351 (358)
Q Consensus 331 ~~G--~~~~~-~~~~~~~~~v~~~ 351 (358)
+.+ ++... ....+..+|+++.
T Consensus 337 ~~~~~~~~~~~~~~~g~~~~~~~~ 360 (426)
T 1sff_A 337 AIAEKHPEIGDVRGLGAMIAIELF 360 (426)
T ss_dssp HHHHTCTTEEEEEEETTEEEEEEB
T ss_pred HHHHhCCCeEEEEEEEEEEEEEEe
Confidence 643 32111 0123667888874
No 203
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.68 E-value=6.2e-16 Score=147.74 Aligned_cols=258 Identities=15% Similarity=0.138 Sum_probs=154.2
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcC---
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--- 119 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~--- 119 (358)
.+|.|.+++.+.+.. .. +.+..+ ..+...++ ++++++++|.+. .+++++|++|+..++.++..
T Consensus 74 ~~p~v~~ai~~~~~~-~~--~~~~~~--~~~~~~~l----~~~la~~~g~~~-----v~~~~ggteA~~~al~~~~~~~~ 139 (420)
T 2pb2_A 74 CHPALVEALKSQGET-LW--HTSNVF--TNEPALRL----GRKLIDATFAER-----VLFMNSGTEANETAFKLARHYAC 139 (420)
T ss_dssp TCHHHHHHHHHHHTT-CC--CCCTTS--CCHHHHHH----HHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cc--cccCcc--CCHHHHHH----HHHHHhhCCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 479999999887753 21 111112 22444444 478999998543 35667788999999988764
Q ss_pred ----CCC-eEEEecCCCCccccccccccCCcccccccce-----e-----EEeecccCCCCCCCCHHHHHHHHhhcCCcE
Q 018318 120 ----PHD-RIMGLDLPSGGHLTHGYYTSGGKKISATSIY-----F-----ESLPYKVNSSTGYIDYDKLEEKALDFRPKL 184 (358)
Q Consensus 120 ----~gd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~-----~~~~~~~~~~~~~id~~~l~~~l~~~~~~~ 184 (358)
+|+ +|++..+.|.+.... .+...|.. + .+..++ ..|++++++++++ ++++
T Consensus 140 ~~~~~g~~~vi~~~~~yh~~~~~--------~~~~~g~~~~~~~~~p~~~~~~~~~------~~d~~~le~~i~~-~~~~ 204 (420)
T 2pb2_A 140 VRHSPFKTKIIAFHNAFHGRSLF--------TVSVGGQPKYSDGFGPKPADIIHVP------FNDLHAVKAVMDD-HTCA 204 (420)
T ss_dssp HHTCTTCCEEEEETTCCCCSSHH--------HHHHSSCHHHHTTSSSCCSCEEEEC------TTCHHHHHHHCCT-TEEE
T ss_pred hccCCCCCEEEEEeCCcCCcCHH--------HHHhcCCccccccCCCCCCCeEEec------CCCHHHHHHHhcc-CceE
Confidence 774 899988877543211 11122211 0 011221 2489999999974 7888
Q ss_pred EEEcCCCC--CC----ccchHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEecCCccCC-CCCeeEE
Q 018318 185 IICGGSAY--PR----DWDYARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPRAGMI 254 (358)
Q Consensus 185 v~~~~~~~--~~----~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s~~K~l~-g~~gG~i 254 (358)
|+++.+++ +. ..++++|.++|++||+++|+|++| .|+...+... ..++ ..|++ |++|+++ |.+.|++
T Consensus 205 vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~-~g~~~~g~~~~~~~~~~~~dii--t~sK~l~~G~~iG~~ 281 (420)
T 2pb2_A 205 VVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQ-CGMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPVSAM 281 (420)
T ss_dssp EEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTT-TTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEE
T ss_pred EEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCC-cCcccCCcHHHHHhcCCCCCeE--EecccccCCCceEEE
Confidence 88765433 22 357899999999999999999998 4654333211 0012 46877 5689985 4467888
Q ss_pred EEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC--
Q 018318 255 FYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-- 332 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 332 (358)
+++++ +.+.+......... +.+....++..++++.+.. +...++.++++++|.+.|++.
T Consensus 282 ~~~~~---------------l~~~l~~~~~~~t~-~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 342 (420)
T 2pb2_A 282 LTTQE---------------IASAFHVGSHGSTY-GGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDE 342 (420)
T ss_dssp EECHH---------------HHTTCC----CCEE-CCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEhHH---------------HHHhhcCCCcCccc-CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh
Confidence 88763 33333321111111 2234444454556665543 356777888899999988775
Q ss_pred Cceeee-CCCcceEEEEEcC
Q 018318 333 GYSLVT-GGTENHLVLWDLR 351 (358)
Q Consensus 333 G~~~~~-~~~~~~~~~v~~~ 351 (358)
+++... ....+..+++++.
T Consensus 343 ~~~~~~~~~~~g~~~~v~~~ 362 (420)
T 2pb2_A 343 QFDIFSDIRGMGLLIGAELK 362 (420)
T ss_dssp HHCCEEEEEEETTEEEEEEC
T ss_pred cCCCeEEEEecceEEEEEEC
Confidence 333211 0123556777764
No 204
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.68 E-value=5.5e-16 Score=146.70 Aligned_cols=256 Identities=15% Similarity=0.104 Sum_probs=155.3
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcC---
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--- 119 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~--- 119 (358)
.+|.|.+++.+.+.. +. ..+.. + ..+...++ ++++++++|.+. .+++++|++|+..++.++..
T Consensus 57 ~~~~v~~a~~~~~~~-~~--~~~~~-~-~~~~~~~l----~~~la~~~g~~~-----v~~~~gg~~a~~~al~~~~~~~~ 122 (397)
T 2ord_A 57 SHPRLVEAIKDQAEK-LI--HCSNL-F-WNRPQMEL----AELLSKNTFGGK-----VFFANTGTEANEAAIKIARKYGK 122 (397)
T ss_dssp TCHHHHHHHHHHHHH-CS--CCCTT-S-EEHHHHHH----HHHHHHTTTSCE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cc--cCccc-c-CCHHHHHH----HHHHHHhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 479999999887753 21 11111 1 22334444 488999998543 35667788999999888753
Q ss_pred ---C-CCeEEEecCCCCccccccccccCCccccccccee----------EEeecccCCCCCCCCHHHHHHHHhhcCCcEE
Q 018318 120 ---P-HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYF----------ESLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185 (358)
Q Consensus 120 ---~-gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----------~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v 185 (358)
+ +++|++..+.|.+.... .+...|... .+..++ ..|++++++++++ ++++|
T Consensus 123 ~~~~~~~~vi~~~~~yh~~~~~--------~~~~~g~~~~~~~~~p~~~~~~~~~------~~d~~~l~~~l~~-~~~~v 187 (397)
T 2ord_A 123 KKSEKKYRILSAHNSFHGRTLG--------SLTATGQPKYQKPFEPLVPGFEYFE------FNNVEDLRRKMSE-DVCAV 187 (397)
T ss_dssp HHCTTCCEEEEEBTCCCCSSHH--------HHHHSBCHHHHGGGCSCCTTEEEEC------TTCHHHHHHHCCT-TEEEE
T ss_pred cCCCCCceEEEEcCCcCCCchh--------hhhccCChhhccccCCCCCCeeEec------CCCHHHHHHHhhc-CeEEE
Confidence 5 47898888776543210 112233210 022222 2489999999874 78999
Q ss_pred EEcCCCCC--C----ccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C-cccEEEecCCccCC-CCCeeEE
Q 018318 186 ICGGSAYP--R----DWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLR-GPRAGMI 254 (358)
Q Consensus 186 ~~~~~~~~--~----~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~-~~d~~~~s~~K~l~-g~~gG~i 254 (358)
++++++|+ . ..++++|.++|++||+++|+|++|+ |+...+. ...+ + ..|++ |++|+|+ |.+.|++
T Consensus 188 ~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~-~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~ 263 (397)
T 2ord_A 188 FLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-GMGRTGK-LFAYQKYGVVPDVL--TTAKGLGGGVPIGAV 263 (397)
T ss_dssp EECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSS-SSHHHHHTCCCSEE--EECGGGGTTSCCEEE
T ss_pred EEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCcc-chhhhhhCCCCCee--eeccccCCCcCeEEE
Confidence 88876655 3 3579999999999999999999986 6543321 1111 1 36876 5589985 4466888
Q ss_pred EEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC--
Q 018318 255 FYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-- 332 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 332 (358)
++++++ . .+......... +.+....+++.++++.+.. +...++.+++++++.+.|++.
T Consensus 264 ~~~~~~---------------~-~l~~~~~~~~~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 323 (397)
T 2ord_A 264 IVNERA---------------N-VLEPGDHGTTF-GGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKE 323 (397)
T ss_dssp EECSTT---------------C-CCCTTSSCCSS-TTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchHh---------------c-ccCCCCcCCCC-CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHH
Confidence 888752 1 22211111111 2334444555566665432 356777888899999999875
Q ss_pred Cceeee-CCCcceEEEEEcC
Q 018318 333 GYSLVT-GGTENHLVLWDLR 351 (358)
Q Consensus 333 G~~~~~-~~~~~~~~~v~~~ 351 (358)
++++.. ....+..+++++.
T Consensus 324 ~~~~~~~~~~~g~~~~~~~~ 343 (397)
T 2ord_A 324 EYDVVADVRGMGLMIGIQFR 343 (397)
T ss_dssp HCTTEEEEEEETTEEEEEEC
T ss_pred hCCceEEEEEEeEEEEEEEC
Confidence 344321 0123456777764
No 205
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.67 E-value=3.3e-15 Score=142.57 Aligned_cols=264 Identities=15% Similarity=0.049 Sum_probs=150.2
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCC-CCCCCccccccCChHHHHHHHHhhcC-CC
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD-PTQWGVNVQPYSGSPANFAAYTAVLE-PH 121 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~v~~~sGt~a~~~~l~a~~~-~g 121 (358)
+|.|.+|+.+.+.... .+....+ ..+...++ ++++++++|++ .++ .+++++|++|+..++.++.. +|
T Consensus 61 ~p~v~~a~~~~~~~~~--~~~~~~~--~~~~~~~l----~~~la~~~~~~~~~~---v~~~~gg~ea~~~ai~~~~~~~~ 129 (419)
T 2eo5_A 61 HPEVIKIGIEQMQKLA--HAAANDF--YNIPQLEL----AKKLVTYSPGNFQKK---VFFSNSGTEAIEASIKVVKNTGR 129 (419)
T ss_dssp CHHHHHHHHHHHTTSC--CCSCSCS--CCHHHHHH----HHHHHHHSSCSSCEE---EEEESSHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHhhCc--ccccccc--CCHHHHHH----HHHHHHhCCCCcCCE---EEEeCchHHHHHHHHHHHHHhhC
Confidence 7999999988875321 1111112 12333334 47899999986 431 34456678899999887643 49
Q ss_pred CeEEEecCCCCccccccccccCCc------ccccccceeEEeecccCCCCCC----------------CCHHHHH-HHHh
Q 018318 122 DRIMGLDLPSGGHLTHGYYTSGGK------KISATSIYFESLPYKVNSSTGY----------------IDYDKLE-EKAL 178 (358)
Q Consensus 122 d~Vl~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~----------------id~~~l~-~~l~ 178 (358)
|+|++..+.|.+...... ...+. .......++..+++ + +++. +|+++++ ++++
T Consensus 130 ~~vi~~~p~yh~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~--~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~ 205 (419)
T 2eo5_A 130 KYIIAFLGGFHGRTFGSI-SLTASKAVQRSIVGPFMPGVIHVPY--P-NPYRNPWHINGYENPSELVNRVIEFIEDYIFV 205 (419)
T ss_dssp CEEEEETTCCCCSSHHHH-HHCCSCGGGGCSSCCCCTTEEEECC--C-CSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHH
T ss_pred CcEEEECCCcCCCCHhhH-hhcCCccccccccCCCCCCCEEECC--C-ccccccccccccccchhhHHHHHHHHHHHHHh
Confidence 999999987764321100 00000 00001112233333 2 1211 4688999 8887
Q ss_pred h----cCCcEEEEcCCC--CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhcccc-CCC-CC-cccEEEecCCcc
Q 018318 179 D----FRPKLIICGGSA--YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEA-ANP-FE-YCHIVTTTTHKS 245 (358)
Q Consensus 179 ~----~~~~~v~~~~~~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~-~~~-~~-~~d~~~~s~~K~ 245 (358)
+ .++++|+++..+ .|...+ +++|.++|++||+++|+|++|. |+...+.. ... .+ ..|++ |++|+
T Consensus 206 ~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-~~g~~g~~~~~~~~~~~~d~~--t~sK~ 282 (419)
T 2eo5_A 206 NLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQM-GLGRTGKLFAIENFNTVPDVI--TLAKA 282 (419)
T ss_dssp HTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGG
T ss_pred hccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCccCcchhhHHhcCCCCCEE--Eeccc
Confidence 4 245666665433 244445 9999999999999999999986 33222211 001 12 45665 57798
Q ss_pred CCC--CCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 018318 246 LRG--PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAV 323 (358)
Q Consensus 246 l~g--~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~ 323 (358)
|++ .+.|+++++++ +. .+. .....+. +.+....++..++++... +..+++.++++
T Consensus 283 ~~~G~~riG~~~~~~~---------------~~-~~~-~~~~~t~-~~n~~~~~aa~aal~~~~-----~~~~~~~~~~~ 339 (419)
T 2eo5_A 283 LGGGIMPIGATIFRKD---------------LD-FKP-GMHSNTF-GGNALACAIGSKVIDIVK-----DLLPHVNEIGK 339 (419)
T ss_dssp GGTTTSCCEEEEEEGG---------------GC-CC-------CC-CCCHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred ccCCccceEEEEEchH---------------hh-cCC-cccCCCC-CCCHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 854 55699998874 22 221 1111111 224444555555665432 26778889999
Q ss_pred HHHHHHhhCCceeeeCCCcceEEEEEcC
Q 018318 324 ALGNYLTGKGYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 324 ~l~~~L~~~G~~~~~~~~~~~~~~v~~~ 351 (358)
+|.+.|.+. +.... ..+..+++++.
T Consensus 340 ~l~~~L~~~-~~~~~--~~g~~~~i~~~ 364 (419)
T 2eo5_A 340 IFAEELQGL-ADDVR--GIGLAWGLEYN 364 (419)
T ss_dssp HHHHHHTTS-SSEEE--EETTEEEEECS
T ss_pred HHHHHHHHh-hhheE--eeeEEEEEEEe
Confidence 999999886 43332 23556777764
No 206
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.66 E-value=7.8e-15 Score=138.68 Aligned_cols=266 Identities=14% Similarity=0.090 Sum_probs=152.5
Q ss_pred ceeEecc--CCC---CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCCh
Q 018318 33 GIELIAS--ENF---TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGS 107 (358)
Q Consensus 33 ~~~l~a~--~~~---~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt 107 (358)
.+.+.++ .++ .+|.|.+++.+.+.... .++ ..+ ..+...+++ +++++++|.+. .+++++|+
T Consensus 38 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~--~~~--~~~~~~~l~----~~la~~~~~~~-----v~~~~gg~ 103 (395)
T 3nx3_A 38 YLDFSSGIGVCALGYNHAKFNAKIKAQVDKLL-HTS--NLY--YNENIAAAA----KNLAKASALER-----VFFTNSGT 103 (395)
T ss_dssp EEESSHHHHTCTTCBSCHHHHHHHHHHHTTCS-CCC--TTS--BCHHHHHHH----HHHHHHHTCSE-----EEEESSHH
T ss_pred EEECCCcHHhccCCCCCHHHHHHHHHHHHhcc-ccc--ccc--CCHHHHHHH----HHHHHhcCCCe-----EEEeCCHH
Confidence 4555544 333 37999999988775321 111 111 234444454 78999988432 46677788
Q ss_pred HHHHHHHHhhc-------CCCCeEEEecCCCCccccccccccCCccccccc----------ceeEEeecccCCCCCCCCH
Q 018318 108 PANFAAYTAVL-------EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATS----------IYFESLPYKVNSSTGYIDY 170 (358)
Q Consensus 108 ~a~~~~l~a~~-------~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~~~~~~id~ 170 (358)
+|+..++.++. .++|+|++..+.|.+..... +...+ .......++ ..|+
T Consensus 104 ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~------~~d~ 169 (395)
T 3nx3_A 104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGA--------LSLTANEKYQKPFKPLISGVKFAK------YNDI 169 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHH--------HTTCCCHHHHGGGCSCCSCEEEEC------TTCH
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHH--------HhhcCCcccccccCCCCCCcEEeC------CCCH
Confidence 99999988764 45899999998876542110 01111 000111121 2489
Q ss_pred HHHHHHHhhcCCcEEEEcCCC--CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEec
Q 018318 171 DKLEEKALDFRPKLIICGGSA--YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTT 241 (358)
Q Consensus 171 ~~l~~~l~~~~~~~v~~~~~~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s 241 (358)
+++++++++ ++++|++..++ .+...+ +++|.++|++||+++|+|++|. |+...+... ...+ ..|+++
T Consensus 170 ~~l~~~l~~-~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-~~g~~g~~~~~~~~~~~~d~~t-- 245 (395)
T 3nx3_A 170 SSVEKLVNE-KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQC-GMGRSGKFFAYEHAQILPDIMT-- 245 (395)
T ss_dssp HHHHTTCCT-TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEE--
T ss_pred HHHHHhccC-CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCcCCcchhHHhcCCCCCEEE--
Confidence 999999864 67777765432 234444 9999999999999999999975 332222110 0111 356664
Q ss_pred CCccCC-CCCeeEEEEeCCCCCCCCCCCCCccccH-HHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHH
Q 018318 242 THKSLR-GPRAGMIFYRKGPKPPKKGQPEGAVYDF-EDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVK 319 (358)
Q Consensus 242 ~~K~l~-g~~gG~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~ 319 (358)
++|+++ |.+.|++++++ ++ .+.+......... +.+....++..++++.+.. +.+.++.+
T Consensus 246 ~sK~~~~G~~~G~~~~~~---------------~~~~~~~~~~~~~~~~-~~~~~~~~aa~aal~~~~~---~~~~~~~~ 306 (395)
T 3nx3_A 246 SAKALGCGLSVGAFVINQ---------------KVASNSLEAGDHGSTY-GGNPLVCAGVNAVFEIFKE---EKILENVN 306 (395)
T ss_dssp ECGGGTTTSCCEEEEECH---------------HHHHHHSCTTCCSSCB-SCCHHHHHHHHHHHHHHHH---TTHHHHHH
T ss_pred ecccccCCCceEEEEEch---------------hhhhhhcCCcccCCCC-CCCHHHHHHHHHHHHHHHh---hHHHHHHH
Confidence 569874 45679998877 34 5555432221211 2233444444455554422 34456666
Q ss_pred HHHHHHHHHHhhC----C-ceeeeCCCcceEEEEEcC
Q 018318 320 ANAVALGNYLTGK----G-YSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 320 ~~~~~l~~~L~~~----G-~~~~~~~~~~~~~~v~~~ 351 (358)
++.+++++.|.+. + +.... ..+..+++++.
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~~~~~ 341 (395)
T 3nx3_A 307 KLTPYLEQSLDELINEFDFCKKRK--GLGFMQGLSLD 341 (395)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEE--EETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEE--eEEEEEEEEeC
Confidence 6777777766553 2 22222 34556777764
No 207
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.66 E-value=6.4e-15 Score=140.95 Aligned_cols=264 Identities=13% Similarity=0.056 Sum_probs=142.8
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc-----
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL----- 118 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~----- 118 (358)
+|.|.+++.+.+... . .+....+ ..+...++ +++++++++.+.++ .+++++|++|+..++.+++
T Consensus 47 ~p~v~~a~~~~~~~~-~-~~~~~~~--~~~~~~~l----~~~la~~~~~~~~~---v~~~~gg~ea~~~al~~~~~~~~~ 115 (430)
T 3i4j_A 47 RAEVGERMAAQAARL-P-FVHGSQF--SSDVLEEY----AGRLARFVGLPTFR---FWAVSGGSEATESAVKLARQYHVE 115 (430)
T ss_dssp CHHHHHHHHHHHHHC-C-CCCTTTC--EEHHHHHH----HHHHHHHTTCTTCE---EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-c-ccccccc--CCHHHHHH----HHHHHHhCCCCCCE---EEEeCcHHHHHHHHHHHHHHHHHh
Confidence 899999998876532 1 1111111 12333344 47899999876542 3555667889999998875
Q ss_pred ---CCCCeEEEecCCCCccccccccccCCccccccccee------------EEeecccCC--CCCCCCHHHHHHHHhh--
Q 018318 119 ---EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYF------------ESLPYKVNS--STGYIDYDKLEEKALD-- 179 (358)
Q Consensus 119 ---~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------------~~~~~~~~~--~~~~id~~~l~~~l~~-- 179 (358)
.++|+|++..+.|.+..... ....+... .+..++.+. ..+..|++++++++++
T Consensus 116 ~g~~~~~~vi~~~~~yhg~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 187 (430)
T 3i4j_A 116 RGEPGRFKVITRVPSYHGASLGS--------LAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREG 187 (430)
T ss_dssp TTCTTCCEEEEETTC---------------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHC
T ss_pred cCCCCCcEEEEEeCCcCCCCccc--------ccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcC
Confidence 45789999998776543111 11111100 111111110 0023467999999974
Q ss_pred -cCCcEEEEcCCCC---CCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCC-C-cccEEEecCCccCC
Q 018318 180 -FRPKLIICGGSAY---PRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPF-E-YCHIVTTTTHKSLR 247 (358)
Q Consensus 180 -~~~~~v~~~~~~~---~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~-~-~~d~~~~s~~K~l~ 247 (358)
.++++|+++.+++ |...+ +++|.++|++||+++|+|++|. |+...+... ..+ + ..|+++ ++|+++
T Consensus 188 ~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~~~~g~~~~~~~~~~~~~di~t--~sK~l~ 264 (430)
T 3i4j_A 188 PETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMS-GMGRCGSPLALSRWSGVTPDIAV--LGKGLA 264 (430)
T ss_dssp GGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTTCCCSEEE--ECGGGT
T ss_pred CCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhhhhhcCCCCcEEE--Eccccc
Confidence 3445666554332 12333 8999999999999999999975 443222111 111 2 346664 569985
Q ss_pred -C-CCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhh----cCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 018318 248 -G-PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA----VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKAN 321 (358)
Q Consensus 248 -g-~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~ 321 (358)
| .+.|++++++ ++.+.+... ....+ .+.+....++..++++.+.. +.+.++.+++
T Consensus 265 ~G~~r~G~~~~~~---------------~i~~~~~~~~~~~~~~~t-~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~ 325 (430)
T 3i4j_A 265 AGYAPLAGLLAAP---------------QVYETVMGGSGAFMHGFT-YAGHPVSVAAGLSVLDIVER---EDLTGAAKER 325 (430)
T ss_dssp TTSSCCEEEEECH---------------HHHHHHHHTTCBCCCCCT-TTTCHHHHHHHHHHHHHHHH---TTHHHHHHHH
T ss_pred CCccccEEEEECH---------------HHHHHHhccCCcccccCC-CCCCHHHHHHHHHHHHHHHc---ccHHHHHHHH
Confidence 4 5668998877 455555532 11111 12233344444455554422 3455666667
Q ss_pred HHHHHHHHhhC-----CceeeeCCCcceEEEEEc
Q 018318 322 AVALGNYLTGK-----GYSLVTGGTENHLVLWDL 350 (358)
Q Consensus 322 ~~~l~~~L~~~-----G~~~~~~~~~~~~~~v~~ 350 (358)
.+++++.|.+. ++.... ..+..+++++
T Consensus 326 ~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~~~~ 357 (430)
T 3i4j_A 326 GAQLLAGLQALQARFPQMMQVR--GTGLLLGVVL 357 (430)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEE--EETTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEE--EEEEEEEEEe
Confidence 77777766653 344333 2344566655
No 208
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.65 E-value=8.8e-15 Score=140.38 Aligned_cols=248 Identities=17% Similarity=0.091 Sum_probs=141.2
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh--cCC
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV--LEP 120 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~--~~~ 120 (358)
.+|.|.+++.+.+.... .+.... ...+...++ +++++++++...++ ..+++++|++|+..++.++ ..+
T Consensus 60 ~~p~v~~a~~~~~~~~~--~~~~~~--~~~~~~~~l----~~~la~~~~~~~~~--~v~~~~ggsea~~~al~~~~~~~~ 129 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANPA--GATILS--ASNAPAVTL----AERLLASFPGEGTH--KIWFGHSGSDANEAAYRAIVKATG 129 (439)
T ss_dssp SCHHHHHHHHHHHHSCS--CSCSSS--SEEHHHHHH----HHHHHHTTTCTTTE--EEEEESSHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcc--Cccccc--cCCHHHHHH----HHHHHHhCCCCCCC--EEEEeCCHHHHHHHHHHHHHHHhC
Confidence 48999999988775421 121111 112333344 48899998654311 2466778889999998875 346
Q ss_pred CCeEEEecCCCCccccccccccCCccccccccee------------EEeecccCCCCCCC-----CHHHHHHHHh---hc
Q 018318 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYF------------ESLPYKVNSSTGYI-----DYDKLEEKAL---DF 180 (358)
Q Consensus 121 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------------~~~~~~~~~~~~~i-----d~~~l~~~l~---~~ 180 (358)
+++|++..+.|.+..... +.+.+... .+..++.+ ..+.. |+++++++++ ..
T Consensus 130 ~~~vi~~~~~yhg~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~~ 200 (439)
T 3dxv_A 130 RSGVIAFAGAYHGCTVGS--------MAFSGHSVQADAAKADGLILLPYPDPYR-PYRNDPTGDAILTLLTEKLAAVPAG 200 (439)
T ss_dssp CCEEEEETTCCCCSSHHH--------HCC-------------CEEEECCCCSSS-CBTTBTTSHHHHHHHHHHHHTSCTT
T ss_pred CCEEEEECCCCCCCcHHH--------HhhcCCCchhhccccCCCCCCcEEcCCC-cccccccHHHHHHHHHHHHHhcCCC
Confidence 778888887664432111 11111110 01122221 01112 7999999994 33
Q ss_pred CCcEEEEcCCCC--CCccc----hHHHHHHHHHhCCEEEEechhhhhhhhcccc-C-CCCC-cccEEEecCCccCC-CCC
Q 018318 181 RPKLIICGGSAY--PRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEA-A-NPFE-YCHIVTTTTHKSLR-GPR 250 (358)
Q Consensus 181 ~~~~v~~~~~~~--~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~-~-~~~~-~~d~~~~s~~K~l~-g~~ 250 (358)
++++|+++.+++ +...+ +++|.++|++||+++|+|++|. |+...+.. . ...+ ..|++ |++|+++ |.+
T Consensus 201 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~r 277 (439)
T 3dxv_A 201 SIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV-GLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLP 277 (439)
T ss_dssp CEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-CTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSC
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhcCCCCCEE--EEcchhcCCcc
Confidence 567777765432 34555 9999999999999999999986 54332211 1 1112 45766 6779884 557
Q ss_pred eeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh
Q 018318 251 AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLT 330 (358)
Q Consensus 251 gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 330 (358)
.|+++++++ +.+.+......... .+....++..++++.+.. +.+.++++++.+++++.|.
T Consensus 278 iG~~~~~~~---------------~~~~~~~~~~~~t~--~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~ 337 (439)
T 3dxv_A 278 LSAVIAPAE---------------ILDCASAFAMQTLH--GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGLS 337 (439)
T ss_dssp CEEEEEEHH---------------HHTSCSSSSCCTTT--TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECHH---------------HHhhhcCCCcCCCc--ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHH
Confidence 799998873 44444322111111 233334444445554322 3456677777778777776
Q ss_pred hC
Q 018318 331 GK 332 (358)
Q Consensus 331 ~~ 332 (358)
+.
T Consensus 338 ~~ 339 (439)
T 3dxv_A 338 EL 339 (439)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 209
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.65 E-value=1.7e-14 Score=137.85 Aligned_cols=262 Identities=14% Similarity=0.053 Sum_probs=146.6
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh--cCC
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV--LEP 120 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~--~~~ 120 (358)
.+|.|.+|+.+.+.... .+. + ..+...++ +++++++++ ..+ ..+++++|++|+..++... ...
T Consensus 69 ~~p~v~~a~~~~~~~~~--~~~---~--~~~~~~~l----a~~l~~~~~-~~~---~v~~~~ggsea~~~al~~a~~~~~ 133 (427)
T 3fq8_A 69 AHPEVIEALKVAMEKGT--SFG---A--PCALENVL----AEMVNDAVP-SIE---MVRFVNSGTEACMAVLRIMRAYTG 133 (427)
T ss_dssp TCHHHHHHHHHHHTTCS--CCS---S--CCHHHHHH----HHHHHHHST-TCS---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCC--CcC---C--CCHHHHHH----HHHHHHhCC-CCC---EEEEeCCHHHHHHHHHHHHHHhhC
Confidence 38999999988775421 111 1 12333344 478999887 332 2355677889999988543 234
Q ss_pred CCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCC------------CCCCHHHHHHHHhhc--CCcEEE
Q 018318 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSST------------GYIDYDKLEEKALDF--RPKLII 186 (358)
Q Consensus 121 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~id~~~l~~~l~~~--~~~~v~ 186 (358)
+++|++..+.|.+..... ....+.....+.++.. .. ...|+++++++++++ ++++|+
T Consensus 134 ~~~vi~~~~~yhg~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi 204 (427)
T 3fq8_A 134 RDKIIKFEGCYHGHADMF--------LVKAGSGVATLGLPSS-PGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVI 204 (427)
T ss_dssp CCEEEEEETCCCCSCGGG--------CSSCCTHHHHHTCCSC-SSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEE
T ss_pred CCEEEEECCCcCCCCHHH--------HHhcCCcccccCCCCC-CCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEE
Confidence 578888887765533111 1111111000000000 00 012899999999764 456777
Q ss_pred EcCCC--CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEecCCccCC-CCCeeEEEE
Q 018318 187 CGGSA--YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPRAGMIFY 256 (358)
Q Consensus 187 ~~~~~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s~~K~l~-g~~gG~i~~ 256 (358)
++.++ .|...+ +++|.++|++||+++|+|++|+ |+ ..+... ...+ ..|++ |++|+++ |.+.|++++
T Consensus 205 ~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~--t~sK~~~~G~~~G~~~~ 280 (427)
T 3fq8_A 205 LEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF-RIAYGGVQEKFGVTPDLT--TLGKIIGGGLPVGAYGG 280 (427)
T ss_dssp ECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT-TTBTTHHHHHTTCCCSEE--EECGGGGTTSSCEEEEE
T ss_pred EcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchhhHhcCCCCChh--hhhhhhhCCcceEEEEE
Confidence 66433 234556 9999999999999999999986 55 322110 0112 35665 4559984 557899888
Q ss_pred eCCCCCCCCCCCCCccccHHHHhhhhcCCCCcC--CCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC--
Q 018318 257 RKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQG--GPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-- 332 (358)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 332 (358)
++ ++.+.+.........+ +.+....++..++++.+.. +.+.++.+++.+++++.|.+.
T Consensus 281 ~~---------------~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ 342 (427)
T 3fq8_A 281 KR---------------EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQ 342 (427)
T ss_dssp CH---------------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cH---------------HHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHH
Confidence 76 3444443211001111 2244445555556665433 245666777777777777653
Q ss_pred --CceeeeCCCcceEEEEEcC
Q 018318 333 --GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 333 --G~~~~~~~~~~~~~~v~~~ 351 (358)
++.... ......+++++.
T Consensus 343 ~~~~~~~~-~~~g~~~~~~~~ 362 (427)
T 3fq8_A 343 ETGHAACG-GQVSGMFGFFFT 362 (427)
T ss_dssp HTTCCCEE-EEETTEEEEESS
T ss_pred hCCCCeEE-EEeeeEEEEEEe
Confidence 332221 123445666654
No 210
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.65 E-value=2.1e-15 Score=148.65 Aligned_cols=224 Identities=11% Similarity=0.118 Sum_probs=135.5
Q ss_pred ccccccch--HHHHHHHHHHHHhh---------cceeEeccC-CCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHH
Q 018318 10 SSLETVDP--EIHDLIEKEKRRQC---------RGIELIASE-NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDE 77 (358)
Q Consensus 10 ~~~~~~~~--~~~~~~~~~~~~~~---------~~~~l~a~~-~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (358)
..+..+++ ++...+.+...... ..+.+..++ ...++.+.+++.+.+.. .+|+... +..+.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~l~~g~~~~~~~~~~~al~~~~~~---~~Y~~~~--g~~~lr~- 145 (546)
T 2zy4_A 72 VGVGGLAKIDGIEGRFERYIAENRDQEGVRFLGKSLSYVRDQLGLDPAAFLHEMVDGILG---CNYPVPP--RMLNISE- 145 (546)
T ss_dssp SCEEECCCSTTHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHT---CSCCSSS--SCCHHHH-
T ss_pred hhhccCCccccchhHHHHHHHhcCCCCcchhHHhhhecccCCCCCCChHHHHHHHHhhhc---CCCCCCc--CCHHHHH-
Confidence 34555665 55565555444332 133444443 34467777777765531 2344321 1222222
Q ss_pred HHHHHHHHHHHhcCC-----CCCCCCccccccCC-hHHHHHHHHh-----hcCCCCeEEEecCCCCccccccccccCCcc
Q 018318 78 IENLCRSRALQTFHL-----DPTQWGVNVQPYSG-SPANFAAYTA-----VLEPHDRIMGLDLPSGGHLTHGYYTSGGKK 146 (358)
Q Consensus 78 le~~~~~~la~~~g~-----~~~~~~~~v~~~sG-t~a~~~~l~a-----~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~ 146 (358)
+.++.++.+.++. +++ .|++++| ++|+..++.+ +++|||+|++..|.|.++.. .
T Consensus 146 --~ia~~~~~~~~~~~~~~~~~~----~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~---------~ 210 (546)
T 2zy4_A 146 --KIVRQYIIREMGADAIPSESV----NLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIE---------I 210 (546)
T ss_dssp --HHHHHHHHHHTTCTTSCGGGE----EEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHH---------H
T ss_pred --HHHHHHHHHhccCCCCCCCcc----eEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHH---------H
Confidence 2233445554432 122 3455555 5688888877 57899999999998876531 1
Q ss_pred cccccceeEEeecccCCC-CCCCCHHHHHHHHhhcCCcEEEEcCCCCCC--cc---chHHHHHHH--HHhCCEEEEechh
Q 018318 147 ISATSIYFESLPYKVNSS-TGYIDYDKLEEKALDFRPKLIICGGSAYPR--DW---DYARFRAVA--DKCGALLLCDMAH 218 (358)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~-~~~id~~~l~~~l~~~~~~~v~~~~~~~~~--~~---~l~~i~~la--~~~g~~lvvD~a~ 218 (358)
+.+.+.+.++++++.+++ ++.+|++++++++. .++++|++++++||+ .. .+++|.++| +++|+++|+|+++
T Consensus 211 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y 289 (546)
T 2zy4_A 211 PELAQYALEEVAINADPSLNWQYPDSELDKLKD-PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVY 289 (546)
T ss_dssp HHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS-TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTT
T ss_pred HHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC-CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcc
Confidence 122332344555554432 35799999988764 378988888888773 33 477888998 7899999999997
Q ss_pred hhhhhhccccCCCC---C-cccEEEecCCccC--CCCCeeEEEEeCC
Q 018318 219 ISGLVAAQEAANPF---E-YCHIVTTTTHKSL--RGPRAGMIFYRKG 259 (358)
Q Consensus 219 ~~g~~~~~~~~~~~---~-~~d~~~~s~~K~l--~g~~gG~i~~~~~ 259 (358)
+ ++... ..++ . +.++++.|++|++ +|.|.|+++++++
T Consensus 290 ~-~~~~~---~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~ 332 (546)
T 2zy4_A 290 G-TFADD---FQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQ 332 (546)
T ss_dssp G-GGSTT---CCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESS
T ss_pred h-hhccc---CcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCH
Confidence 5 33321 1111 1 4568899999987 3667899999874
No 211
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.64 E-value=8e-15 Score=140.50 Aligned_cols=264 Identities=17% Similarity=0.103 Sum_probs=150.5
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh--cCC
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV--LEP 120 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~--~~~ 120 (358)
.+|.|.+++.+.+.... .+ .+ ..+...++ +++++++++ ..+ ..+++++|++|+..++.+. +.+
T Consensus 73 ~~~~v~~a~~~~~~~~~--~~---~~--~~~~~~~l----~~~la~~~~-~~~---~v~~~~sgseA~~~al~~ar~~~~ 137 (434)
T 2epj_A 73 KHPRVLEAVEEALARGW--LY---GA--PGEAEVLL----AEKILGYVK-RGG---MIRFVNSGTEATMTAIRLARGYTG 137 (434)
T ss_dssp TCHHHHHHHHHHHHTCS--CC---SS--CCHHHHHH----HHHHHHHHC-TTC---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCC--CC---CC--CCHHHHHH----HHHHHHhCC-CCC---EEEEeCCHHHHHHHHHHHHHHhhC
Confidence 47999999988875421 11 11 12333344 478888884 222 2356677889999998872 345
Q ss_pred CCeEEEecCCCCccccccccccCCcc------cccccce----eEEeecccCCCCCCCCHHHHHHHHhhc--CCcEEEEc
Q 018318 121 HDRIMGLDLPSGGHLTHGYYTSGGKK------ISATSIY----FESLPYKVNSSTGYIDYDKLEEKALDF--RPKLIICG 188 (358)
Q Consensus 121 gd~Vl~~~~~~~~~~~~~~~~~~~~~------~~~~g~~----~~~~~~~~~~~~~~id~~~l~~~l~~~--~~~~v~~~ 188 (358)
+++|++..+.|.+........ .+.. ....|.. ..++.++ ..|+++++++++++ ++++|+++
T Consensus 138 ~~~vi~~~~~yhg~~~~~~~~-~~~~~~~~~~p~~~g~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~e 210 (434)
T 2epj_A 138 RDLILKFDGCYHGSHDAVLVA-AGSAAAHYGVPTSAGVPEAVARLTLVTP------YNDVEALERVFAEYGDRIAGVIVE 210 (434)
T ss_dssp CCEEEEEETCCCCSSGGGSEE-CC------CEESSTTCCHHHHTTEEEEE------TTCHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCeEEEEcCCcCCCCHHHHHh-cCCCccccCCCCCCCCCCcccCceEecC------CCCHHHHHHHHHhCCCCEEEEEEe
Confidence 678888887766532111000 0000 0001210 0112222 24899999999752 56677765
Q ss_pred CCC--CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEecCCccCC-CCCeeEEEEeC
Q 018318 189 GSA--YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPRAGMIFYRK 258 (358)
Q Consensus 189 ~~~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s~~K~l~-g~~gG~i~~~~ 258 (358)
..+ .|...+ +++|.++|++||+++|+|++|+ |+ ..+... ..++ ..|++ |++|+|+ |.++|++++++
T Consensus 211 p~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~ 286 (434)
T 2epj_A 211 PVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GF-RLGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGSR 286 (434)
T ss_dssp SSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TT-TSSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECH
T ss_pred CCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ce-eCCcchhhHHhCCCCCee--eecchhcCCcceeeeeecH
Confidence 432 355666 9999999999999999999987 65 222100 0011 45765 6679985 45789999877
Q ss_pred CCCCCCCCCCCCccccHHHHhhhhc--CCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC----
Q 018318 259 GPKPPKKGQPEGAVYDFEDKINFAV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK---- 332 (358)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 332 (358)
++.+.+.... .....-+.+....++..++++.+.. +...+++.++.+++++.|++.
T Consensus 287 ---------------~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~ 348 (434)
T 2epj_A 287 ---------------EVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEVLDRT 348 (434)
T ss_dssp ---------------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444443211 0110112233444444555655432 345677788888888888764
Q ss_pred CceeeeCCCcceEEEEEcC
Q 018318 333 GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 333 G~~~~~~~~~~~~~~v~~~ 351 (358)
++.... ...+..+|+++.
T Consensus 349 ~~~~~~-~~~g~~~~i~~~ 366 (434)
T 2epj_A 349 GLPYTI-NRVESMMQLFIG 366 (434)
T ss_dssp TCCEEE-EEETTEEEEEET
T ss_pred CCcEEE-EEeeeEEEEEEe
Confidence 653221 124456788764
No 212
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.63 E-value=1.6e-14 Score=137.91 Aligned_cols=265 Identities=14% Similarity=0.056 Sum_probs=150.0
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHh--hcCC
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTA--VLEP 120 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a--~~~~ 120 (358)
.+|.|.+|+.+.+.... .+. + ..+...++ +++++++++ ..+ ..+++++|++|+..++.. .+.+
T Consensus 69 ~~p~v~~a~~~~~~~~~--~~~---~--~~~~~~~l----~~~l~~~~~-~~~---~v~~~~~g~ea~~~al~~ar~~~~ 133 (424)
T 2e7u_A 69 AHPKVLARVRETLERGL--TFG---A--PSPLEVAL----AKKVKRAYP-FVD---LVRFVNSGTEATMSALRLARGYTG 133 (424)
T ss_dssp TCHHHHHHHHHHHHTCS--CCS---S--CCHHHHHH----HHHHHHHCT-TCC---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCC--CCC---C--CCHHHHHH----HHHHHHhCC-CCC---EEEEeCCHHHHHHHHHHHHHHhhC
Confidence 48999999988875421 111 1 12333344 478888885 332 235567788999998875 2334
Q ss_pred CCeEEEecCCCCccccccccccCCcc------cccccce----eEEeecccCCCCCCCCHHHHHHHHhh--cCCcEEEEc
Q 018318 121 HDRIMGLDLPSGGHLTHGYYTSGGKK------ISATSIY----FESLPYKVNSSTGYIDYDKLEEKALD--FRPKLIICG 188 (358)
Q Consensus 121 gd~Vl~~~~~~~~~~~~~~~~~~~~~------~~~~g~~----~~~~~~~~~~~~~~id~~~l~~~l~~--~~~~~v~~~ 188 (358)
+++|++..+.|.++....... .+.. ....|.. ..++.++ ..|++++++++++ .++++|+++
T Consensus 134 ~~~vi~~~~~yhg~~~~~~~~-~~~~~~~~~~p~~~g~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~e 206 (424)
T 2e7u_A 134 RPYIVKFRGNYHGHADGLLVE-AGSGALTLGVPSSAGVPEEYAKLTLVLE------YNDPEGLREVLKRRGEEIAAIIFE 206 (424)
T ss_dssp CCEEEEETTCCCCCCGGGSEE-CCSSSCCBCEESSTTCCHHHHTTEEEEC------TTCHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCEEEEECCCcCCCcHHHHHh-cCCcccccCCCCCCCCCCccCCceEeCC------CCCHHHHHHHHHhCCCCEEEEEEe
Confidence 578888888776543111000 0000 0001110 0112221 2589999999974 245666665
Q ss_pred CCC--CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEecCCccCC-CCCeeEEEEeC
Q 018318 189 GSA--YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPRAGMIFYRK 258 (358)
Q Consensus 189 ~~~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s~~K~l~-g~~gG~i~~~~ 258 (358)
..+ .|...+ +++|.++ ++||+++|+|++|+ |+ ..+... ..++ ..|++ |++|+|+ |.+.|++++++
T Consensus 207 p~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~~~~~~ 281 (424)
T 2e7u_A 207 PVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GF-RLAFGGATELLGLKPDLV--TLGKILGGGLPAAAYAGRR 281 (424)
T ss_dssp SSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TT-TSSTTHHHHHHTCCCSEE--EECGGGGTTSSCEEEEECH
T ss_pred CCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-cc-ccchhHHHHHhCCCcchh--hhhhhhhCCcceEEEEEcH
Confidence 322 345556 9999999 99999999999987 65 322110 0011 35765 7789985 45789998877
Q ss_pred CCCCCCCCCCCCccccHHHHhhhhc--CCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC----
Q 018318 259 GPKPPKKGQPEGAVYDFEDKINFAV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK---- 332 (358)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 332 (358)
++.+.+.... ......+.+....++..++++.+.. .+...+++.++.+++++.|++.
T Consensus 282 ---------------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~ 344 (424)
T 2e7u_A 282 ---------------EIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEK 344 (424)
T ss_dssp ---------------HHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------HHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444443311 0110112233344444555655422 1356777888888888888764
Q ss_pred CceeeeCCCcceEEEEEcCC
Q 018318 333 GYSLVTGGTENHLVLWDLRP 352 (358)
Q Consensus 333 G~~~~~~~~~~~~~~v~~~~ 352 (358)
|+.... ...+..+|+++..
T Consensus 345 ~~~~~~-~~~g~~~~i~~~~ 363 (424)
T 2e7u_A 345 GLPHTV-NRVGSMITVFFTE 363 (424)
T ss_dssp TCCCEE-EEETTEEEEESSS
T ss_pred CCceEE-EeeceEEEEEEeC
Confidence 653211 1234578888754
No 213
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.62 E-value=4.1e-14 Score=135.46 Aligned_cols=260 Identities=11% Similarity=0.058 Sum_probs=145.6
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcC--C
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--P 120 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~--~ 120 (358)
.+|.|.+|+.+.+......+++ .+...++ +++++++++ ..+ ..+++++|++|+..++..+.. +
T Consensus 72 ~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~l----~~~la~~~~-~~~---~v~~~~sGsea~~~ai~~a~~~~~ 136 (434)
T 3l44_A 72 AHPHITKAITTAAENGVLYGTP-------TALEVKF----AKMLKEAMP-ALD---KVRFVNSGTEAVMTTIRVARAYTG 136 (434)
T ss_dssp TCHHHHHHHHHHHHHCSCCSSC-------CHHHHHH----HHHHHHHCT-TCS---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCcCCCCC-------CHHHHHH----HHHHHHhCC-CCC---EEEEeCchHHHHHHHHHHHHHhhC
Confidence 3899999998877543211111 2333344 377888886 332 235567789999999987754 7
Q ss_pred CCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCC-------------CCCHHHHHHHHhhc--CCcEE
Q 018318 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTG-------------YIDYDKLEEKALDF--RPKLI 185 (358)
Q Consensus 121 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------~id~~~l~~~l~~~--~~~~v 185 (358)
+++|++..+.|.+..... +...|........+.. .+ ..|+++++++++++ ++++|
T Consensus 137 ~~~vi~~~~~yhg~~~~~--------~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~v 206 (434)
T 3l44_A 137 RTKIMKFAGCYHGHSDLV--------LVAAGSGPSTLGTPDS--AGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAI 206 (434)
T ss_dssp CCEEEEETTCCCCSSGGG--------GBC-------CCCBSS--TTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEE
T ss_pred CCEEEEEcCccCCCcHHH--------HhhcCCcccccCCCCc--CCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEE
Confidence 789999988776543111 1112211100001000 00 12899999999753 45666
Q ss_pred EEcCCC--CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C-cccEEEecCCccCC-CCCeeEE
Q 018318 186 ICGGSA--YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLR-GPRAGMI 254 (358)
Q Consensus 186 ~~~~~~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~-~~d~~~~s~~K~l~-g~~gG~i 254 (358)
+++.++ .|...+ +++|.++|++||++||+|++|. |+ ..+.. ... + ..|++ +++|.++ |.+.|++
T Consensus 207 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~-g~-~~g~~-~~~~~~~~~~di~--t~sK~~~~G~~iG~~ 281 (434)
T 3l44_A 207 LVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT-AF-RFMYG-GAQDLLGVTPDLT--ALGKVIGGGLPIGAY 281 (434)
T ss_dssp EECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TT-TSSSS-CHHHHHTCCCSEE--EEEGGGGTTSSCEEE
T ss_pred EEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-ce-ecccc-HHHHHcCCCCCee--ehhhhhcCCcCeeeE
Confidence 665433 233555 9999999999999999999974 54 32211 111 1 35655 4569874 5567888
Q ss_pred EEeCCCCCCCCCCCCCccccHHHHhhhhc--CCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 018318 255 FYRKGPKPPKKGQPEGAVYDFEDKINFAV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (358)
++++ ++.+.+.... ..+...+.+....++..++++.+.. +.+.++.+++.+++++.|++.
T Consensus 282 ~~~~---------------~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~ 343 (434)
T 3l44_A 282 GGKK---------------EIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKGILEQ 343 (434)
T ss_dssp EECH---------------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHH
T ss_pred EEcH---------------HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHH
Confidence 8876 3444443211 1111112333444444556665433 345666777777777777653
Q ss_pred ----CceeeeCCCcceEEEEEcC
Q 018318 333 ----GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 333 ----G~~~~~~~~~~~~~~v~~~ 351 (358)
++.... ...+..+++++.
T Consensus 344 ~~~~~~~~~~-~~~g~~~~~~~~ 365 (434)
T 3l44_A 344 AAKHNIDITL-NRLKGALTVYFT 365 (434)
T ss_dssp HHHTTCCEEE-EEETTEEEEEES
T ss_pred HHhCCCCEEE-EeeccEEEEEEe
Confidence 442211 123445666553
No 214
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.62 E-value=6.7e-14 Score=134.81 Aligned_cols=254 Identities=13% Similarity=0.005 Sum_probs=141.2
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc-----
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL----- 118 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~----- 118 (358)
+|+|.+|+.+.+.... +.... ...+...+ .+++++++++.+.+ .+++++|++|+..++..++
T Consensus 67 ~p~v~~A~~~~~~~~~---~~~~~--~~~~~~~~----la~~l~~~~~~~~~----v~~~~ggseA~~~al~~~~~~~~~ 133 (452)
T 3n5m_A 67 RKELAEAAYKQLQTLS---YFPMS--QSHEPAIK----LAEKLNEWLGGEYV----IFFSNSGSEANETAFKIARQYYAQ 133 (452)
T ss_dssp CHHHHHHHHHHHTTCC---CCCTT--SEEHHHHH----HHHHHHHHHTSCEE----EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcC---Ccccc--cCCHHHHH----HHHHHHHhCCCCce----EEEeCchHHHHHHHHHHHHHHHHh
Confidence 7999999988775321 11111 12233333 44889999886653 3556778899999998876
Q ss_pred C---CCCeEEEecCCCCccccccccccCCcccc-----cccceeEEeecccCCCCCCCC---------HHHHHHHHh---
Q 018318 119 E---PHDRIMGLDLPSGGHLTHGYYTSGGKKIS-----ATSIYFESLPYKVNSSTGYID---------YDKLEEKAL--- 178 (358)
Q Consensus 119 ~---~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~id---------~~~l~~~l~--- 178 (358)
. ++|+|++..+.|.+...... ...+.... -....+..++.+........| +++|+++++
T Consensus 134 ~g~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 212 (452)
T 3n5m_A 134 KGEPHRYKFMSRYRGYHGNTMATM-AATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWEL 212 (452)
T ss_dssp TTCTTCCEEEEETTCCCCSSHHHH-HSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC
T ss_pred cCCCCCCEEEEECCCcCCCCHHHH-hcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcC
Confidence 5 78999999988765321000 00000000 000011111111000001122 899999997
Q ss_pred hcCCcEEEEcCC--CCCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEecCCccCC-C
Q 018318 179 DFRPKLIICGGS--AYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-G 248 (358)
Q Consensus 179 ~~~~~~v~~~~~--~~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s~~K~l~-g 248 (358)
..++++|+++.+ +.|...+ +++|.++|++||+++|+|++|. |+...+... ...+ ..|+++ ++|+++ |
T Consensus 213 ~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~t--~sK~l~~G 289 (452)
T 3n5m_A 213 SETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVIC-GFGRTGKAFGFMNYDVKPDIIT--MAKGITSA 289 (452)
T ss_dssp GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEE--ECGGGGTT
T ss_pred CCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcccccchhhhcCCCCCEEe--ecccccCC
Confidence 235677777654 3344444 9999999999999999999975 433222110 0112 456665 568874 5
Q ss_pred -CCeeEEEEeCCCCCCCCCCCCCccccHHHHhhh----hcC-CCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 018318 249 -PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINF----AVF-PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANA 322 (358)
Q Consensus 249 -~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~ 322 (358)
.+.|++++++ ++.+.+.. ..+ .....+.+....++..++++.+.. +...++++++.
T Consensus 290 ~~~ig~~~~~~---------------~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~ 351 (452)
T 3n5m_A 290 YLPLSATAVKR---------------EIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN---ENLIERSAQMG 351 (452)
T ss_dssp SSCCEEEEEEH---------------HHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHH
T ss_pred CcceEEEEECH---------------HHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHH
Confidence 4669998877 45555432 111 011112233344444455554422 34566677777
Q ss_pred HHHHHHHhhC
Q 018318 323 VALGNYLTGK 332 (358)
Q Consensus 323 ~~l~~~L~~~ 332 (358)
+++++.|.+.
T Consensus 352 ~~l~~~L~~~ 361 (452)
T 3n5m_A 352 SLLLEQLKEE 361 (452)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777653
No 215
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.62 E-value=1.1e-14 Score=140.56 Aligned_cols=271 Identities=11% Similarity=0.001 Sum_probs=153.0
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcC----
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE---- 119 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~---- 119 (358)
+|.|.+|+.+.+.... . +....+ ..+...+| +++++++++...+ ..++++||++|+..++..++.
T Consensus 93 ~p~v~~A~~~~~~~~~-~-~~~~~~--~~~~~~~L----~e~la~~~~~~~~---~v~~~~sGseA~~~Alk~a~~~~~~ 161 (457)
T 3tfu_A 93 HPALDQALTTQLRVMN-H-VMFGGL--THEPAARL----AKLLVDITPAGLD---TVFFSDSGSVSVEVAAKMALQYWRG 161 (457)
T ss_dssp CHHHHHHHHHHHHHCS-C-CCSSSE--ECHHHHHH----HHHHHHHSSTTEE---EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-C-cccccc--CCHHHHHH----HHHHHHhCCCCcC---EEEEeCcHHHHHHHHHHHHHHHHHh
Confidence 8999999988775421 1 110111 12333344 4889999976543 235667788999999988754
Q ss_pred ---CCC-eEEEecCCCCccccccccc-c----CCcccccccceeEEeecccCCCCCCCCHHHHHHHHhh--cCCcEEEEc
Q 018318 120 ---PHD-RIMGLDLPSGGHLTHGYYT-S----GGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD--FRPKLIICG 188 (358)
Q Consensus 120 ---~gd-~Vl~~~~~~~~~~~~~~~~-~----~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~--~~~~~v~~~ 188 (358)
+|+ +|++..+.|.+........ . .-.........+..++++.+ .....|+++|++++++ .++++|+++
T Consensus 162 ~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~d~~~le~~l~~~~~~~aavi~e 240 (457)
T 3tfu_A 162 RGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPR-DYDPAYSAAFEAQLAQHAGELAAVVVE 240 (457)
T ss_dssp TTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCS-SCCHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred cCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCc-ccCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 555 7888887765432100000 0 00000000111222333221 1123689999999974 346777777
Q ss_pred C-CCC--CCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C-cccEEEecCCccCCC--CCeeEEE
Q 018318 189 G-SAY--PRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLRG--PRAGMIF 255 (358)
Q Consensus 189 ~-~~~--~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~-~~d~~~~s~~K~l~g--~~gG~i~ 255 (358)
. .++ |...+ +++|.++|++||+++|+|++|. |+...+.. ..+ + ..|++ +++|+|+| ++.|+++
T Consensus 241 p~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g~gr~G~~-~a~~~~~~~pdii--t~sK~l~gG~~~lG~v~ 316 (457)
T 3tfu_A 241 PVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIAT-GFGRTGAL-FAADHAGVSPDIM--CVGKALTGGYLSLAATL 316 (457)
T ss_dssp SSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEE--EECGGGGTTSSCCEEEE
T ss_pred CCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCcc-CCccccch-hHhHhcCCCceEE--EEChhhhCCCcceEEEE
Confidence 5 332 33333 8999999999999999999964 44332211 111 1 45776 66799976 5789998
Q ss_pred EeCCCCCCCCCCCCCccccHHHHhhh---h--cCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh
Q 018318 256 YRKGPKPPKKGQPEGAVYDFEDKINF---A--VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLT 330 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 330 (358)
+++ ++.+.+.. . ....+. +.+....++..++++.+.. +.+.++..++.+++++.|+
T Consensus 317 ~~~---------------~i~~~~~~~~~~~~~~~~t~-~~n~~a~aaa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~ 377 (457)
T 3tfu_A 317 CTA---------------DVAHTISAGAAGALMHGPTF-MANPLACAVSVASVELLLG---QDWRTRITELAAGLTAGLD 377 (457)
T ss_dssp EEH---------------HHHHHHHHSSSCSCCCCCTT-TTCHHHHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHHHG
T ss_pred EcH---------------HHHHHhhccCCCceeEecCC-CcCHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHH
Confidence 887 45555531 1 111111 2233444444555655433 2456777888899999888
Q ss_pred hC----CceeeeCCCcceEEEEEcC
Q 018318 331 GK----GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 331 ~~----G~~~~~~~~~~~~~~v~~~ 351 (358)
+. ++.... ..+..+++++.
T Consensus 378 ~l~~~~~v~~vr--~~G~~~~i~l~ 400 (457)
T 3tfu_A 378 TARALPAVTDVR--VCGAIGVIECD 400 (457)
T ss_dssp GGGGSTTEEEEE--ECSSCEEEEES
T ss_pred HHhcCCCeeeee--cCCeEEEEEEC
Confidence 75 232222 23445666654
No 216
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.61 E-value=1.5e-14 Score=139.35 Aligned_cols=262 Identities=11% Similarity=0.016 Sum_probs=144.5
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHh---hcC
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTA---VLE 119 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a---~~~ 119 (358)
.+|.|.+++.+.+.... .+ .+ ..++++.++++++++++ ..+ ..+++++|++|+..++.+ +.+
T Consensus 74 ~~~~v~~a~~~~~~~~~--~~---~~------~~~~~~~la~~l~~~~~-~~~---~v~~~~gg~eA~~~al~~ar~~~~ 138 (453)
T 2cy8_A 74 GHPRVNAAIAEALSHGV--QY---AA------SHPLEVRWAERIVAAFP-SIR---KLRFTGSGTETTLLALRVARAFTG 138 (453)
T ss_dssp TCHHHHHHHHHHHTTTC--SS---CS------SCHHHHHHHHHHHHHCT-TCS---EEEEESCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCC--CC---CC------CCHHHHHHHHHHHhhCC-CCC---EEEEeCCHHHHHHHHHHHHHHhhC
Confidence 58999999988775421 11 11 12444556688888886 332 235667788999999887 554
Q ss_pred CCCeEEEecCCCCccccccccccCCcc---ccccccee----EEeecccCCCCCCCCHHHHHHHHhhc--CCcEEEEcCC
Q 018318 120 PHDRIMGLDLPSGGHLTHGYYTSGGKK---ISATSIYF----ESLPYKVNSSTGYIDYDKLEEKALDF--RPKLIICGGS 190 (358)
Q Consensus 120 ~gd~Vl~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~----~~~~~~~~~~~~~id~~~l~~~l~~~--~~~~v~~~~~ 190 (358)
+++|++..+.|.+........ .+.. ....|... .+..++ ..|+++++++++++ ++++|+++..
T Consensus 139 -~~~vi~~~~~yhg~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~ep~ 210 (453)
T 2cy8_A 139 -RRMILRFEGHYHGWHDFSASG-YNSHFDGQPAPGVLPETTANTLLIR------PDDIEGMREVFANHGSDIAAFIAEPV 210 (453)
T ss_dssp -CCEEEEECC-----------------------------CGGGEEEEC------TTCHHHHHHHHHHHGGGEEEEEECSS
T ss_pred -CCEEEEEcCCcCCCchhhHhh-cCCccCCCcCCCCCccccCceeecC------CCCHHHHHHHHHhcCCCEEEEEECCC
Confidence 468888887765432111000 0000 00011100 011121 25899999999753 4567766543
Q ss_pred C--CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEecCCccCC-CCCeeEEEEeCCC
Q 018318 191 A--YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPRAGMIFYRKGP 260 (358)
Q Consensus 191 ~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s~~K~l~-g~~gG~i~~~~~~ 260 (358)
. .|...+ +++|.++|++||+++|+|++|+ |+ ..+... ..++ ..|++ |++|+|+ |.++|+++++++
T Consensus 211 ~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~- 285 (453)
T 2cy8_A 211 GSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GF-RVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGRED- 285 (453)
T ss_dssp EHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TT-TTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHH-
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-cc-ccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechHH-
Confidence 2 245556 9999999999999999999986 65 322110 0012 35765 6679986 467899998873
Q ss_pred CCCCCCCCCCccccHHHHhhh---hc-CCCCcCCCChhHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHhhC---
Q 018318 261 KPPKKGQPEGAVYDFEDKINF---AV-FPSLQGGPHNHQIGALAVALKQ-ASTPAFKAYAKQVKANAVALGNYLTGK--- 332 (358)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 332 (358)
+.+.+.. .. ......+.+....++..++++. + . +...+++.++++++++.|++.
T Consensus 286 --------------~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~L~~~~~~ 347 (453)
T 2cy8_A 286 --------------VMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREAMNHLFAR 347 (453)
T ss_dssp --------------HHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333322 00 0000112333444444555655 4 2 244567777888888888764
Q ss_pred -CceeeeCCCcceEEEEEcC
Q 018318 333 -GYSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 333 -G~~~~~~~~~~~~~~v~~~ 351 (358)
++.... ...+..+|+++.
T Consensus 348 ~~~~~~~-~~~g~~~~i~~~ 366 (453)
T 2cy8_A 348 KGLNWLA-YGRFSGFHLMPG 366 (453)
T ss_dssp TTCCEEE-ECCTTEEEEEET
T ss_pred CCCcEEE-EEeeeEEEEEEe
Confidence 543211 134457888875
No 217
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.61 E-value=8.6e-14 Score=133.08 Aligned_cols=265 Identities=16% Similarity=0.120 Sum_probs=144.4
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc--CC
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL--EP 120 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~--~~ 120 (358)
.+|+|.+|+.+.+......++ ..+...++ +++++++++ ..+ ..+++++|++|+..++.... .+
T Consensus 70 ~~p~v~~A~~~~~~~~~~~~~-------~~~~~~~l----a~~l~~~~~-~~~---~v~~~~sGsea~~~al~~a~~~~~ 134 (429)
T 4e77_A 70 NHPAIRQAVIEAVERGLSFGA-------PTEMEVKM----AQLVTDLVP-TMD---MVRMVNSGTEATMSAIRLARGYTG 134 (429)
T ss_dssp TCHHHHHHHHHHHTTCSCCSS-------CCHHHHHH----HHHHHHHST-TCS---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCcccCC-------CCHHHHHH----HHHHHhhCC-CCC---EEEEeCcHHHHHHHHHHHHHHhhC
Confidence 389999999887754221111 12333344 478888886 332 24666778999999987543 35
Q ss_pred CCeEEEecCCCCccccccccccC-Cc----ccccccce----eEEeecccCCCCCCCCHHHHHHHHhhc--CCcEEEEcC
Q 018318 121 HDRIMGLDLPSGGHLTHGYYTSG-GK----KISATSIY----FESLPYKVNSSTGYIDYDKLEEKALDF--RPKLIICGG 189 (358)
Q Consensus 121 gd~Vl~~~~~~~~~~~~~~~~~~-~~----~~~~~g~~----~~~~~~~~~~~~~~id~~~l~~~l~~~--~~~~v~~~~ 189 (358)
+++|++..+.|.+.......... +. .....+.. .....+ ...|+++++++++++ ++++|+++.
T Consensus 135 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d~~~le~~l~~~~~~~~~vi~ep 208 (429)
T 4e77_A 135 RDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTC------TYNDLASVRQAFEQYPQEVACIIVEP 208 (429)
T ss_dssp CCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEE------CTTCHHHHHHHHHHSTTTEEEEEECS
T ss_pred CCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeec------CCCCHHHHHHHHHhcCCCEEEEEECC
Confidence 67888888776543210000000 00 00000000 000111 123899999999753 345666553
Q ss_pred CC--CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEecCCccCC-CCCeeEEEEeCC
Q 018318 190 SA--YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPRAGMIFYRKG 259 (358)
Q Consensus 190 ~~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s~~K~l~-g~~gG~i~~~~~ 259 (358)
.+ .+...+ +++|.++|++||+++|+|++|. |+ ..+... ..++ ..|++ |++|+++ |.+.|++++++
T Consensus 209 ~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~-r~g~~~~~~~~~~~pdi~--t~sK~~~~G~~~G~~~~~~- 283 (429)
T 4e77_A 209 VAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT-GF-RVALAGAQDYYHVIPDLT--CLGKIIGGGMPVGAFGGRR- 283 (429)
T ss_dssp SBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT-BT-TTBTTCHHHHTTCCCSEE--EEEGGGGTTSCCEEEEECH-
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-ccCcchHHHhcCCCCCee--eecccccCCCCeEEEEECH-
Confidence 32 234445 9999999999999999999986 54 322110 0112 34765 5669885 55778888876
Q ss_pred CCCCCCCCCCCccccHHHHhhhhc--CCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC----C
Q 018318 260 PKPPKKGQPEGAVYDFEDKINFAV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK----G 333 (358)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----G 333 (358)
++.+.+.... ......+.+....++..++++.+.. +.+.++.+++.+++++.|.+. +
T Consensus 284 --------------~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (429)
T 4e77_A 284 --------------EVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ---VGVYETLTELTDSLATGLRHAAKEEN 346 (429)
T ss_dssp --------------HHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --------------HHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444443211 0111112344455555566665533 345566667777777777653 5
Q ss_pred ceeeeCCCcceEEEEEcC
Q 018318 334 YSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 334 ~~~~~~~~~~~~~~v~~~ 351 (358)
+.... ...+..+++++.
T Consensus 347 ~~~~~-~~~g~~~~~~~~ 363 (429)
T 4e77_A 347 IPLVV-NHVGGMFGLFFT 363 (429)
T ss_dssp CCCEE-EEETTEEEEECC
T ss_pred CceEE-EEeeeEEEEEEc
Confidence 43222 123445676654
No 218
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.61 E-value=2.9e-14 Score=136.46 Aligned_cols=269 Identities=12% Similarity=-0.003 Sum_probs=151.4
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc--CC
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL--EP 120 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~--~~ 120 (358)
.+|.|.+++.+.+... . +....+ ..+...++ +++++++++++.+ ..+++++|++|+..++..+. ..
T Consensus 60 ~~p~v~~a~~~~~~~~-~--~~~~~~--~~~~~~~l----~~~la~~~~~~~~---~v~~~~gg~ea~~~a~~~~~~~~~ 127 (433)
T 1zod_A 60 CHPEIVSVIGEYAGKL-D--HLFSEM--LSRPVVDL----ATRLANITPPGLD---RALLLSTGAESNEAAIRMAKLVTG 127 (433)
T ss_dssp TCHHHHHHHHHHHHHC-C--CCCTTC--CCHHHHHH----HHHHHHHSCTTCC---EEEEESCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC-c--cccccc--CCHHHHHH----HHHHHHhCCCCcC---EEEEeCchHHHHHHHHHHHHHhhC
Confidence 3899999998877532 1 111111 12333344 4778999987653 23555677889999987653 34
Q ss_pred CCeEEEecCCCCccccccc------cccCCcccccccceeEEeecccCCC---------CCCCCHHHHHHHHhh---cCC
Q 018318 121 HDRIMGLDLPSGGHLTHGY------YTSGGKKISATSIYFESLPYKVNSS---------TGYIDYDKLEEKALD---FRP 182 (358)
Q Consensus 121 gd~Vl~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~id~~~l~~~l~~---~~~ 182 (358)
+|+|++..+.|.+...... +...+. ....+ +..++++.... .+.+|++++++++++ .++
T Consensus 128 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~ 204 (433)
T 1zod_A 128 KYEIVGFAQSWHGMTGAAASATYSAGRKGVG-PAAVG--SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNL 204 (433)
T ss_dssp CCEEEEETTCCCCSSHHHHHTCCSSCCSSSC-CCCTT--EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCE
T ss_pred CCeEEEECCCcCCCChhHHhhcCCccccccC-CCCCC--ceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCe
Confidence 6799999887754321000 000000 00112 23333321000 012469999999975 355
Q ss_pred cEEEEcCCC--CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C-cccEEEecCCccCC-CCCe
Q 018318 183 KLIICGGSA--YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLR-GPRA 251 (358)
Q Consensus 183 ~~v~~~~~~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~-~~d~~~~s~~K~l~-g~~g 251 (358)
++|+++.++ .|...+ +++|.++|++||+++|+|++|+ |+...+.. ..+ + ..|++ |++|+|+ |.+.
T Consensus 205 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~g~~g~~-~~~~~~~~~~di~--s~sK~~~~G~~i 280 (433)
T 1zod_A 205 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-GVGRTGTM-FACQRDGVTPDIL--TLSKTLGAGLPL 280 (433)
T ss_dssp EEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEE--EECHHHHTTSSC
T ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcCchH-hHHhhcCCCCCEE--EecccccCCCCe
Confidence 677665432 344444 9999999999999999999986 33222211 111 1 35655 6679884 4566
Q ss_pred eEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCC--CCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 018318 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFP--SLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL 329 (358)
Q Consensus 252 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 329 (358)
|++++++ ++.+.+...... .+. +.+....++..++++.+.+ +.+.+++.++++++++.|
T Consensus 281 g~~~~~~---------------~~~~~~~~~~~~~~~t~-~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l 341 (433)
T 1zod_A 281 AAIVTSA---------------AIEERAHELGYLFYTTH-VSDPLPAAVGLRVLDVVQR---DGLVARANVMGDRLRRGL 341 (433)
T ss_dssp EEEEECH---------------HHHHHHHHTTCCCCCTT-TTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHH
T ss_pred eEEEEhH---------------HHHHhhccCCCCCCCCC-CcCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 9999877 455555442111 111 2234444444566665432 245677777888888888
Q ss_pred hhC----C-ceeeeCCCcceEEEEEcC
Q 018318 330 TGK----G-YSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 330 ~~~----G-~~~~~~~~~~~~~~v~~~ 351 (358)
++. + +.... ..+..+|+++.
T Consensus 342 ~~l~~~~~~~~~~~--~~g~~~~i~~~ 366 (433)
T 1zod_A 342 LDLMERFDCIGDVR--GRGLLLGVEIV 366 (433)
T ss_dssp HHHHHHCTTEEEEE--EETTEEEEEEE
T ss_pred HHHHHhCCCeEEEE--EEEEEEEEEEe
Confidence 764 3 22222 23445677664
No 219
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.60 E-value=7.1e-14 Score=135.02 Aligned_cols=254 Identities=13% Similarity=-0.017 Sum_probs=137.6
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcC----
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE---- 119 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~---- 119 (358)
+|.|.+|+.+.+.... ..++...+ ..+...++ +++++++++...+ ..+++++|++|+..++.+++.
T Consensus 69 ~p~v~~A~~~~~~~~~-~~~~~~~~--~~~~~~~l----a~~l~~~~~~~~~---~v~~~~gGseA~~~al~~~~~~~~~ 138 (460)
T 3gju_A 69 RQKIADAIATQAKNLA-YYHAYVGH--GTEASITL----AKMIIDRAPKGMS---RVYFGLSGSDANETNIKLIWYYNNV 138 (460)
T ss_dssp CHHHHHHHHHHHHHHS-CCCCCTTC--CCHHHHHH----HHHHHHHSCTTEE---EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-cccccccc--CCHHHHHH----HHHHHhhCCCCcC---EEEEeCchHHHHHHHHHHHHHHHHh
Confidence 7999999988765321 11221111 12333344 4788888865543 235567788999999988863
Q ss_pred ----CCCeEEEecCCCCcccccccc-ccC---CcccccccceeEEeeccc--CCCCCCCC--------HHHHHHHHhh--
Q 018318 120 ----PHDRIMGLDLPSGGHLTHGYY-TSG---GKKISATSIYFESLPYKV--NSSTGYID--------YDKLEEKALD-- 179 (358)
Q Consensus 120 ----~gd~Vl~~~~~~~~~~~~~~~-~~~---~~~~~~~g~~~~~~~~~~--~~~~~~id--------~~~l~~~l~~-- 179 (358)
++++|++..+.|.+....... +.. -........++..++.+. ...+...+ +++|++++++
T Consensus 139 ~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~ 218 (460)
T 3gju_A 139 LGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG 218 (460)
T ss_dssp TTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC
Confidence 568999988877553210000 000 000000111223333221 10111223 6889998864
Q ss_pred -cCCcEEEEcCCCC--CCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC-C-CCC-cccEEEecCCccCCC-
Q 018318 180 -FRPKLIICGGSAY--PRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA-N-PFE-YCHIVTTTTHKSLRG- 248 (358)
Q Consensus 180 -~~~~~v~~~~~~~--~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~-~-~~~-~~d~~~~s~~K~l~g- 248 (358)
.++++|+++.+++ |...+ +++|.++|++||+++|+|++|. |+...+... . ..+ ..|+++ ++|+|+|
T Consensus 219 ~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t--~sK~l~gG 295 (460)
T 3gju_A 219 PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVT-GFGRLGTMFGSDHYGIKPDLIT--IAKGLTSA 295 (460)
T ss_dssp GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEE--ECGGGTTT
T ss_pred CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeee--eehhhcCC
Confidence 3456777764332 22333 8999999999999999999976 443222110 0 011 356664 5699976
Q ss_pred -CCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhh-------cCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 018318 249 -PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA-------VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKA 320 (358)
Q Consensus 249 -~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~ 320 (358)
.+.|++++++ ++.+.+... ....+. +.+....++..++++.+.. +.+.++.++
T Consensus 296 ~~~lg~v~~~~---------------~i~~~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~ 356 (460)
T 3gju_A 296 YAPLSGVIVAD---------------RVWQVLVQGSDKLGSLGHGWTY-SAHPICVAAGVANLELIDE---MDLVTNAGE 356 (460)
T ss_dssp SSCCEEEEEEH---------------HHHHHHHHHHHHHCSCSCCCTT-TTCHHHHHHHHHHHHHHHH---TTHHHHHHH
T ss_pred CCCeEEEEECH---------------HHHHHHhcccccccccccCCCC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHH
Confidence 5779998887 455555321 111111 2233444444555655432 234555555
Q ss_pred HHHHHHHHH
Q 018318 321 NAVALGNYL 329 (358)
Q Consensus 321 ~~~~l~~~L 329 (358)
+.+++++.|
T Consensus 357 ~~~~~~~~l 365 (460)
T 3gju_A 357 TGAYFRAEL 365 (460)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566665555
No 220
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.60 E-value=2.8e-14 Score=136.48 Aligned_cols=242 Identities=16% Similarity=0.104 Sum_probs=138.9
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcC--C
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--P 120 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~--~ 120 (358)
.+|.|.+|+.+.+......++ ..+...++. ++++++++ ..+ ..+++++|++|+..++..+.. +
T Consensus 70 ~~p~v~~A~~~~~~~~~~~~~-------~~~~~~~l~----~~la~~~~-~~~---~v~~~~~Gsea~~~ai~~a~~~~~ 134 (429)
T 3k28_A 70 ANDRVVEALKAVAERGTSFGA-------PTEIENKLA----KLVIERVP-SIE---IVRMVNSGTEATMSALRLARGYTG 134 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCSS-------CCHHHHHHH----HHHHHHST-TCS---EEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhCcCcCC-------CCHHHHHHH----HHHHHhCC-CCC---EEEEeCChHHHHHHHHHHHHHhhC
Confidence 389999999887754321111 123333443 77888885 222 235667789999999887753 6
Q ss_pred CCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCC-------------CCCHHHHHHHHhhc--CCcEE
Q 018318 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTG-------------YIDYDKLEEKALDF--RPKLI 185 (358)
Q Consensus 121 gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------~id~~~l~~~l~~~--~~~~v 185 (358)
+++|++..+.|.+..... +...|........+. ..+ ..|+++++++++++ ++++|
T Consensus 135 ~~~vi~~~~~yhg~~~~~--------~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~v 204 (429)
T 3k28_A 135 RNKILKFIGCYHGHGDSL--------LIKAGSGVATLGLPD--SPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACV 204 (429)
T ss_dssp CCEEEEEETCCCCSCGGG--------CSSCCTTC-----CC--CTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEE
T ss_pred CCEEEEECCCcCCCcHHH--------HHhcCCcccccCCCC--cCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEE
Confidence 788998887765433111 111221111111110 001 12899999999753 45666
Q ss_pred EEcCCC--CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEecCCccCC-CCCeeEEE
Q 018318 186 ICGGSA--YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPRAGMIF 255 (358)
Q Consensus 186 ~~~~~~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s~~K~l~-g~~gG~i~ 255 (358)
+++.++ .|...+ +++|.++|++||+++|+|++| .|+ ..+... ..++ ..|++ +++|+++ |.+.|+++
T Consensus 205 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~-~g~-~~g~~~~~~~~~~~~di~--t~sK~~~~G~~iG~~~ 280 (429)
T 3k28_A 205 IVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVM-TGF-RVAYNCGQGYYGVTPDLT--CLGKVIGGGLPVGAYG 280 (429)
T ss_dssp EECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTT-TSSTTHHHHHHTCCCSEE--EECGGGGTTSCCEEEE
T ss_pred EEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-ccc-ccCcchHHHHhCCCCcee--hhhhhhcCCCCeEEEE
Confidence 665432 234455 999999999999999999998 455 322110 0011 34665 4679884 46779998
Q ss_pred EeCCCCCCCCCCCCCccccHHHHhhhhc--CCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 018318 256 YRKGPKPPKKGQPEGAVYDFEDKINFAV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (358)
+++ ++.+.+.... ......+.+....++..++++... ++..++++++++++++.|++.
T Consensus 281 ~~~---------------~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~ 340 (429)
T 3k28_A 281 GKA---------------EIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKA 340 (429)
T ss_dssp ECH---------------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHH
T ss_pred EcH---------------HHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 877 3444443211 111111233344444445555432 456777788888888888764
No 221
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.60 E-value=9.7e-14 Score=133.59 Aligned_cols=266 Identities=12% Similarity=-0.007 Sum_probs=141.4
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcC----
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE---- 119 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~---- 119 (358)
+|.|.+|+.+.+... .. +.... ...+...++ +++++++++...+ ..++++||++|+..++.+++.
T Consensus 62 ~p~v~~A~~~~~~~~-~~-~~~~~--~~~~~~~~l----a~~l~~~~~~~~~---~v~~~~sGseA~~~al~~~~~~~~~ 130 (448)
T 3dod_A 62 KKELDDAIKKQLGKI-AH-STLLG--MTNVPATQL----AETLIDISPKKLT---RVFYSDSGAEAMEIALKMAFQYWKN 130 (448)
T ss_dssp CHHHHHHHHHHHTTC-SC-CCCSS--SEEHHHHHH----HHHHHHHSCTTEE---EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-cC-ccccc--cCCHHHHHH----HHHHHHhCCCCCC---EEEEeCchHHHHHHHHHHHHHHHHh
Confidence 799999998877532 11 11111 122334344 4889999865433 235667789999999988764
Q ss_pred CC----CeEEEecCCCCccccccccccCCcccccccce----------eEEeecccCCCCC-----------CCCHHHHH
Q 018318 120 PH----DRIMGLDLPSGGHLTHGYYTSGGKKISATSIY----------FESLPYKVNSSTG-----------YIDYDKLE 174 (358)
Q Consensus 120 ~g----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~-----------~id~~~l~ 174 (358)
+| |+|++..+.|.+..... +...+.. .....++.. ..+ ..|+++|+
T Consensus 131 ~G~~~~~~vi~~~~~yhg~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le 201 (448)
T 3dod_A 131 IGKPEKQKFIAMKNGYHGDTIGA--------VSVGSIELFHHVYGPLMFESYKAPIP-YVYRSESGDPDECRDQCLRELA 201 (448)
T ss_dssp TTCTTCCEEEEEC-------------------------------------CEEECCC-CCTTSSSCCHHHHHHHHHHHHH
T ss_pred hCCCCCCEEEEECCCCCCccHHH--------HHhcCCccccccccCCCCCceEeCCC-ccccCCccchhhhhHHHHHHHH
Confidence 44 99999998875532111 1111100 011112111 111 12589999
Q ss_pred HHHhh--cCCcEEEEcCCC---CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC-C-CCC-cccEEEecC
Q 018318 175 EKALD--FRPKLIICGGSA---YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA-N-PFE-YCHIVTTTT 242 (358)
Q Consensus 175 ~~l~~--~~~~~v~~~~~~---~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~-~-~~~-~~d~~~~s~ 242 (358)
+++++ .++++|+++.+. .|...+ +++|.++|++||+++|+|++|. |+...+... . ..+ ..|+++ +
T Consensus 202 ~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~g~~g~~~a~~~~~~~~di~t--~ 278 (448)
T 3dod_A 202 QLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT-GFGRTGKMFACEHENVQPDLMA--A 278 (448)
T ss_dssp HHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEE--E
T ss_pred HHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccchhhhhhcCCCCCEEE--e
Confidence 99973 345667766432 233333 8999999999999999999976 443222111 0 111 356664 5
Q ss_pred CccCC-C-CCeeEEEEeCCCCCCCCCCCCCccccHHHHhhh-------hcCCCCcCCCChhHHHHHHHHHHHhccHHHHH
Q 018318 243 HKSLR-G-PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINF-------AVFPSLQGGPHNHQIGALAVALKQASTPAFKA 313 (358)
Q Consensus 243 ~K~l~-g-~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~ 313 (358)
+|+++ | .+.|++++++ ++.+.+.. .....+ .+.+....++..++++.+.. +.
T Consensus 279 sK~l~~G~~~ig~v~~~~---------------~~~~~~~~~~~~~~~~~~~~t-~~~~~~~~aaa~aal~~~~~---~~ 339 (448)
T 3dod_A 279 GKGITGGYLPIAVTFATE---------------DIYKAFYDDYENLKTFFHGHS-YTGNQLGCAVALENLALFES---EN 339 (448)
T ss_dssp CGGGGTTSSCCEEEEEEH---------------HHHHTTCSCGGGCCCCCCCCT-TTTCHHHHHHHHHHHHHHHH---TT
T ss_pred cccccCCcCceEEEEECH---------------HHHHHhhhccccCCcccccCC-CCcCHHHHHHHHHHHHHHhc---cc
Confidence 69984 4 3778888887 35554432 111111 12233344444555654422 24
Q ss_pred HHHHHHHHHHHHHHHHhhC-Cceeee-CCCcceEEEEEcC
Q 018318 314 YAKQVKANAVALGNYLTGK-GYSLVT-GGTENHLVLWDLR 351 (358)
Q Consensus 314 ~~~~~~~~~~~l~~~L~~~-G~~~~~-~~~~~~~~~v~~~ 351 (358)
..++.+++.+++++.|.+. ++.... ....+..+|+++.
T Consensus 340 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~ 379 (448)
T 3dod_A 340 IVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELV 379 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEc
Confidence 4566667777777777652 221111 0123446677764
No 222
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.58 E-value=2.5e-14 Score=138.19 Aligned_cols=252 Identities=14% Similarity=0.022 Sum_probs=137.8
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcC----
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE---- 119 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~---- 119 (358)
+|.|.+|+.+.+.... ..++...+ ..+...++ +++++++++.+.+ -.+++++|++|+..++..+++
T Consensus 68 ~p~v~~A~~~~~~~~~-~~~~~~~~--~~~~~~~l----a~~l~~~~~~~~~---~v~~~~ggseA~~~al~~~~~~~~~ 137 (459)
T 4a6r_A 68 RKDFAEAARRQMEELP-FYNTFFKT--THPAVVEL----SSLLAEVTPAGFD---RVFYTNSGSESVDTMIRMVRRYWDV 137 (459)
T ss_dssp CHHHHHHHHHHHHHCS-CCCTTSSS--CCHHHHHH----HHHHHHHSCTTCC---EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-cccccccc--CCHHHHHH----HHHHHHhCCCCCC---EEEEeCchHHHHHHHHHHHHHHHHh
Confidence 7999999988775421 12222111 12333344 4889999876554 235566778999999988864
Q ss_pred ----CCCeEEEecCCCCccccccccccCCcc-----cccccceeEEeeccc--CCCCCCCC--------HHHHHHHHhh-
Q 018318 120 ----PHDRIMGLDLPSGGHLTHGYYTSGGKK-----ISATSIYFESLPYKV--NSSTGYID--------YDKLEEKALD- 179 (358)
Q Consensus 120 ----~gd~Vl~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~--~~~~~~id--------~~~l~~~l~~- 179 (358)
++++|++..+.|.+...... ...+.. ......++..++.+. ...++ .| +++|++++++
T Consensus 138 ~g~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~ 215 (459)
T 4a6r_A 138 QGKPEKKTLIGRWNGYHGSTIGGA-SLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEI 215 (459)
T ss_dssp TTCTTCCEEEEETTCCCCSSHHHH-HHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCcCCccHHHH-hhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHc
Confidence 57899999888765321000 000000 000111122333221 00011 45 7889998874
Q ss_pred --cCCcEEEEcCCC--CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC-C-CCC-cccEEEecCCccCCC
Q 018318 180 --FRPKLIICGGSA--YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA-N-PFE-YCHIVTTTTHKSLRG 248 (358)
Q Consensus 180 --~~~~~v~~~~~~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~-~-~~~-~~d~~~~s~~K~l~g 248 (358)
.++++|+++..+ .|...+ +++|.++|++||+++|+|++|. |+...+... . ..+ ..|+++ ++|+|+|
T Consensus 216 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~pdi~t--~sK~l~g 292 (459)
T 4a6r_A 216 GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVIC-GFGRTGEWFGHQHFGFQPDLFT--AAKGLSS 292 (459)
T ss_dssp CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEE--ECGGGGT
T ss_pred CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeee--hhhhhcC
Confidence 245666665432 223444 8999999999999999999975 443322110 0 011 457765 4699864
Q ss_pred --CCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhh---cCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHH-HHH
Q 018318 249 --PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA---VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVK-ANA 322 (358)
Q Consensus 249 --~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~-~~~ 322 (358)
.+.|++++++ ++.+.+... ....+. +.+....++..++++.+.. +.+.++.+ ++.
T Consensus 293 g~~~lg~v~~~~---------------~i~~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~ 353 (459)
T 4a6r_A 293 GYLPIGAVFVGK---------------RVAEGLIAGGDFNHGFTY-SGHPVCAAVAHANVAALRD---EGIVQRVKDDIG 353 (459)
T ss_dssp TSSCCEEEEECH---------------HHHHHHHHHCTTHHHHHH-CSCHHHHHHHHHHHHHHHH---TCHHHHHHHTHH
T ss_pred CCCCccceeeCH---------------HHHHHhhcCCCcccCCCC-CCCHHHHHHHHHHHHHHhc---chHHHHHHHHHH
Confidence 5778888877 455544411 100111 1233344444455554422 23455555 566
Q ss_pred HHHHHHH
Q 018318 323 VALGNYL 329 (358)
Q Consensus 323 ~~l~~~L 329 (358)
+++++.|
T Consensus 354 ~~~~~~l 360 (459)
T 4a6r_A 354 PYMQKRW 360 (459)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666666
No 223
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.57 E-value=3.2e-13 Score=131.04 Aligned_cols=256 Identities=13% Similarity=0.022 Sum_probs=145.2
Q ss_pred CCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc----
Q 018318 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL---- 118 (358)
Q Consensus 43 ~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~---- 118 (358)
.+|.|.+|+.+.+.. ...+++. . ...+...++ .++++++++...+ ..++++||++|+..++..++
T Consensus 71 ~~p~v~~A~~~~l~~-~~~~~~~-~--~~~~~~~~l----a~~l~~~~~~~~~---~v~~~~sGseA~~~Aik~a~~~~~ 139 (476)
T 3i5t_A 71 GRREIVDAMAHQAMV-LPYASPW-Y--MATSPAARL----AEKIATLTPGDLN---RIFFTTGGSTAVDSALRFSEFYNN 139 (476)
T ss_dssp CCHHHHHHHHHHHHH-CCCCCTT-T--CBCHHHHHH----HHHHHTTSSTTCC---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-ccCcccC-c--cCCHHHHHH----HHHHHhcCCCCcC---EEEEeCchHHHHHHHHHHHHHHHH
Confidence 389999999888754 2212221 1 122344444 4889999865443 23566778999999998875
Q ss_pred ----CCCCeEEEecCCCCccccccccccCCcc-----cccccceeEEeecccCCCCCCCC--------HHHHHHHHhh--
Q 018318 119 ----EPHDRIMGLDLPSGGHLTHGYYTSGGKK-----ISATSIYFESLPYKVNSSTGYID--------YDKLEEKALD-- 179 (358)
Q Consensus 119 ----~~gd~Vl~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~id--------~~~l~~~l~~-- 179 (358)
..+++|++..+.|.+...... ...+.. ......++..++.+........| +++|++++++
T Consensus 140 ~~g~~~~~~vi~~~~~yHg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~ 218 (476)
T 3i5t_A 140 VLGRPQKKRIIVRYDGYHGSTALTA-ACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG 218 (476)
T ss_dssp HTTCTTCCEEEEETTCCCCSSHHHH-HTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCCCCCEEEEEcCCcCcCChhhc-cccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC
Confidence 336789998887765421000 000000 00001112222222110011122 7899998874
Q ss_pred -cCCcEEEEcCCCC--CCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC--C-CCC-cccEEEecCCccCCC
Q 018318 180 -FRPKLIICGGSAY--PRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--N-PFE-YCHIVTTTTHKSLRG 248 (358)
Q Consensus 180 -~~~~~v~~~~~~~--~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~-~~~-~~d~~~~s~~K~l~g 248 (358)
.++++|+++.+++ |...+ +++|.++|++||+++|+|++|. |+...+... . .++ ..|+++ ++|+|+|
T Consensus 219 ~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~-g~gr~G~~~~~~~~~~v~pdi~t--~sK~l~~ 295 (476)
T 3i5t_A 219 PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT-GFGRCGEWFASEKVFGVVPDIIT--FAKGVTS 295 (476)
T ss_dssp GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHTTCCCCSEEE--ECGGGGT
T ss_pred CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccccCceeeecccCCCcchhh--hhhhhcC
Confidence 2456777765432 23333 8999999999999999999975 443322211 1 122 457775 4598854
Q ss_pred --CCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhh-------cCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHH
Q 018318 249 --PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA-------VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVK 319 (358)
Q Consensus 249 --~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~ 319 (358)
.+.|++++++ ++.+.+... ....+. +.++...++..++++.+.. +...++.+
T Consensus 296 G~~plg~v~~~~---------------~i~~~~~~~~~~~~~~~~~~t~-~~np~a~aAa~aaL~~~~~---~~~~~~~~ 356 (476)
T 3i5t_A 296 GYVPLGGLAISE---------------AVLARISGENAKGSWFTNGYTY-SNQPVACAAALANIELMER---EGIVDQAR 356 (476)
T ss_dssp TSSCCEEEEECH---------------HHHHTTSGGGCTTCEECCCCTT-TTCHHHHHHHHHHHHHHHH---TTHHHHHH
T ss_pred CCcCeEEEEECH---------------HHHHHHhcCCcccccccccCCC-CcCHHHHHHHHHHHHHHHh---HHHHHHHH
Confidence 5668888877 455554432 111111 2233444454556655432 35577788
Q ss_pred HHHHHHHHHHhhC
Q 018318 320 ANAVALGNYLTGK 332 (358)
Q Consensus 320 ~~~~~l~~~L~~~ 332 (358)
++.+++++.|+..
T Consensus 357 ~~~~~l~~~L~~l 369 (476)
T 3i5t_A 357 EMADYFAAALASL 369 (476)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 8888999888864
No 224
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.56 E-value=7.1e-14 Score=135.47 Aligned_cols=249 Identities=14% Similarity=0.031 Sum_probs=142.7
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcC----
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE---- 119 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~---- 119 (358)
+|.|.+|+.+.+... ...++...+ ..+...+| +++++++++...+ ..++++||++|+..++..+..
T Consensus 73 ~p~v~~A~~~~~~~~-~~~~~~~~~--~~~~~~~l----ae~l~~~~~~~~~---~v~~~~sGseA~~~aik~a~~~~~~ 142 (472)
T 3hmu_A 73 RDELAEVAARQMREL-PYYNTFFKT--THVPAIAL----AQKLAELAPGDLN---HVFFAGGGSEANDTNIRMVRTYWQN 142 (472)
T ss_dssp CHHHHHHHHHHHHHC-SCCCSSSSE--ECHHHHHH----HHHHHHHSCTTEE---EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-ccccccccc--CCHHHHHH----HHHHHHhCCCCCC---EEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 799999998877532 112222111 12333344 4788888875443 235567788999999988764
Q ss_pred ----CCCeEEEecCCCCccccccccccCCccccccc-----------ceeEEeeccc--CCCCCCCC--------HHHHH
Q 018318 120 ----PHDRIMGLDLPSGGHLTHGYYTSGGKKISATS-----------IYFESLPYKV--NSSTGYID--------YDKLE 174 (358)
Q Consensus 120 ----~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~~~~~~~--~~~~~~id--------~~~l~ 174 (358)
++++|++..+.|.+.... .+...+ .++..++.+. ...++ .| +++|+
T Consensus 143 ~g~~~~~~ii~~~~~yHg~t~~--------~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le 213 (472)
T 3hmu_A 143 KGQPEKTVIISRKNAYHGSTVA--------SSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELE 213 (472)
T ss_dssp TTCTTCCEEEEETTCCCCSSHH--------HHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEcCcCCCccHH--------hhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHH
Confidence 467899888877553210 001111 0122233221 10011 34 78899
Q ss_pred HHHhh---cCCcEEEEcCCC--CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEecC
Q 018318 175 EKALD---FRPKLIICGGSA--YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTT 242 (358)
Q Consensus 175 ~~l~~---~~~~~v~~~~~~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s~ 242 (358)
+++++ .++++|+++..+ .|...+ +++|.++|++||+++|+|++|. |+...+... ..++ ..|+++ +
T Consensus 214 ~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~a~~~~~v~pdi~t--~ 290 (472)
T 3hmu_A 214 EAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVIC-GFGRTGNWFGTQTMGIRPHIMT--I 290 (472)
T ss_dssp HHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEE--E
T ss_pred HHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-CCcccCccchhHHhCCCCceee--e
Confidence 98864 245667766432 233444 8999999999999999999975 443222110 0011 457775 4
Q ss_pred CccCCC--CCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCC-CCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHH
Q 018318 243 HKSLRG--PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFP-SLQGGPHNHQIGALAVALKQASTPAFKAYAKQVK 319 (358)
Q Consensus 243 ~K~l~g--~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~ 319 (358)
+|+|+| .+.|++++++ ++.+.+....+. +...+.+....++..++++.+.+ +...++.+
T Consensus 291 sK~l~gg~~plG~v~~~~---------------~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~ 352 (472)
T 3hmu_A 291 AKGLSSGYAPIGGSIVCD---------------EVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE---ENILDHVR 352 (472)
T ss_dssp CGGGTTTSSCCEEEEEEH---------------HHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHH
T ss_pred chhhhcCCcceEEEEECH---------------HHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHH---hHHHHHHH
Confidence 599865 5778888877 455555321111 11112233444444455655432 34566777
Q ss_pred -HHHHHHHHHHhhC
Q 018318 320 -ANAVALGNYLTGK 332 (358)
Q Consensus 320 -~~~~~l~~~L~~~ 332 (358)
++.+++++.|++.
T Consensus 353 ~~~~~~l~~~L~~l 366 (472)
T 3hmu_A 353 NVAAPYLKEKWEAL 366 (472)
T ss_dssp HTHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHH
Confidence 7888888888664
No 225
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.56 E-value=6.2e-14 Score=133.47 Aligned_cols=294 Identities=13% Similarity=0.082 Sum_probs=159.1
Q ss_pred ccccchHHHHHHHHHHHHhh-cceeEecc-------CCCCCHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHH
Q 018318 12 LETVDPEIHDLIEKEKRRQC-RGIELIAS-------ENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCR 83 (358)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-~~~~l~a~-------~~~~~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~ 83 (358)
++.-|++.+--+.+..+... ..++|..+ ..++.|.|.+|....+.....-+|.+. .|. .+|.+.+.
T Consensus 24 v~~~p~d~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~---~G~---p~lr~aia 97 (420)
T 4h51_A 24 IQAQAPDVIFDLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPI---SGY---QPFIDEAV 97 (420)
T ss_dssp CCCCCCCHHHHHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCT---TCC---HHHHHHHH
T ss_pred CCCCCCChHHHHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCc---CCh---HHHHHHHH
Confidence 44555665444444333333 24666654 234568999987665544332235432 232 34433332
Q ss_pred HHHHHhcCCCCCC-CCccccccCChHHHHHHHHh----hcCCCCeEEEecCCCCccccccccccCCcccccccce-eEEe
Q 018318 84 SRALQTFHLDPTQ-WGVNVQPYSGSPANFAAYTA----VLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIY-FESL 157 (358)
Q Consensus 84 ~~la~~~g~~~~~-~~~~v~~~sGt~a~~~~l~a----~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~ 157 (358)
+. ++|-.... ....+.+.+||.|+..++.. +..|||+|++++|.++.|.. .++..|.. +...
T Consensus 98 ~~---~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~---------i~~~aG~~~V~~~ 165 (420)
T 4h51_A 98 KI---IYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYG---------VVKAAGWKNICTY 165 (420)
T ss_dssp HH---HHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHH---------HHHHTTCCCEEEE
T ss_pred HH---hcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHH---------HHHHcCCeEEEee
Confidence 32 23432211 00123345677776655443 35799999999999887642 23455643 2222
Q ss_pred ecccCCCCCCCCHHHHHHHHhhcC--CcEEEEcCCCCCC-----ccchHHHHHHHHHhCCEEEEechhhhhhhhccccCC
Q 018318 158 PYKVNSSTGYIDYDKLEEKALDFR--PKLIICGGSAYPR-----DWDYARFRAVADKCGALLLCDMAHISGLVAAQEAAN 230 (358)
Q Consensus 158 ~~~~~~~~~~id~~~l~~~l~~~~--~~~v~~~~~~~~~-----~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~ 230 (358)
++ .+.+++.+|.+.+.+.+++.. +++++.+.++||+ ...+++|+++|+++++++++|++ +.|+.+.+....
T Consensus 166 ~~-~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~-Y~~~~~~~~~~~ 243 (420)
T 4h51_A 166 AY-YDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSA-YQGYASGSLDTD 243 (420)
T ss_dssp EC-EEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEES-CTTTTTSCHHHH
T ss_pred cc-ccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehh-hhhhccCCcccc
Confidence 22 233456789999988886533 3455566677773 33588999999999999999999 556655321111
Q ss_pred CC------C--cccEEEecCCccC--CCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHH
Q 018318 231 PF------E--YCHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALA 300 (358)
Q Consensus 231 ~~------~--~~d~~~~s~~K~l--~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 300 (358)
.. + ..-+++.|++|++ +|.|.|++++..+... ....+...+....... .+.+.........
T Consensus 244 ~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~--------~~~~~~~~l~~~~r~~-~s~~p~~~a~~~~ 314 (420)
T 4h51_A 244 AYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKT--------KRADVKSVMDSLIREE-YTCPPAHGARLAH 314 (420)
T ss_dssp THHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHH--------HHHHHHHHHHHHHHTT-TSSCCHHHHHHHH
T ss_pred hHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHH--------HHHHHHHHHHHhhhcc-cCcchHHHHHHHH
Confidence 11 1 1237788999975 5889999988774110 0000111111111111 1222222222212
Q ss_pred HHHHH-----hccHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 018318 301 VALKQ-----ASTPAFKAYAKQVKANAVALGNYLTGKGY 334 (358)
Q Consensus 301 ~al~~-----~~~~~~~~~~~~~~~~~~~l~~~L~~~G~ 334 (358)
..+.. ....+...+++++.+.++.|.+.|.+.|.
T Consensus 315 ~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~ 353 (420)
T 4h51_A 315 LILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQT 353 (420)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22211 01123456677888889999999988763
No 226
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.54 E-value=2.6e-13 Score=130.89 Aligned_cols=271 Identities=14% Similarity=0.023 Sum_probs=141.1
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc--CCC
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL--EPH 121 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~--~~g 121 (358)
+|.|.+|+.+.+.... .+....+ ..+...++ +++++++++....+ ..++++||++|+..++..+. ..+
T Consensus 82 ~p~v~~A~~~~~~~~~--~~~~~~~--~~~~~~~l----a~~l~~~~~~~~~~--~v~~~~sGseA~~~alk~a~~~~g~ 151 (453)
T 4ffc_A 82 HPAVAAAIADQATHFT--HTCFMVT--PYEQYVQV----AELLNALTPGDHDK--RTALFNSGAEAVENAIKVARLATGR 151 (453)
T ss_dssp CHHHHHHHHHHHHHCS--CCTTTTS--CCHHHHHH----HHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcc--ccccCcC--CCHHHHHH----HHHHHHhCCCCCCc--EEEEeCcHHHHHHHHHHHHHHhcCC
Confidence 8999999988775321 1211111 12333334 48899998754211 23566778999999997664 245
Q ss_pred CeEEEecCCCCcccccccc-c----cCCcccccccceeEEeecccCCCC-CCCC--------HHHHHHHHhhcCCcEEEE
Q 018318 122 DRIMGLDLPSGGHLTHGYY-T----SGGKKISATSIYFESLPYKVNSST-GYID--------YDKLEEKALDFRPKLIIC 187 (358)
Q Consensus 122 d~Vl~~~~~~~~~~~~~~~-~----~~~~~~~~~g~~~~~~~~~~~~~~-~~id--------~~~l~~~l~~~~~~~v~~ 187 (358)
++|++..+.|.+....... + ............+..++++....+ ...+ ++.+++.+...++.+|++
T Consensus 152 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ 231 (453)
T 4ffc_A 152 PAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIII 231 (453)
T ss_dssp CEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEE
T ss_pred CEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7899988877654211000 0 000000001112233333311001 1122 345555553334455665
Q ss_pred cCCCCC---Cccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C-cccEEEecCCccCC-CCCeeEEE
Q 018318 188 GGSAYP---RDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLR-GPRAGMIF 255 (358)
Q Consensus 188 ~~~~~~---~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~-~~d~~~~s~~K~l~-g~~gG~i~ 255 (358)
+ |.++ ...+ +++|.++|++||+++|+|++|. |+...+.. ... + ..|+++ ++|+++ |.+.|+++
T Consensus 232 e-p~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~g~~g~~-~a~~~~~~~pdi~t--~sK~~~~G~~~G~~~ 306 (453)
T 4ffc_A 232 E-PIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQT-GFARTGAW-FASEHEGIVPDIVT--MAKGIAGGMPLSAVT 306 (453)
T ss_dssp C-SSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEEE--ECGGGGTTSSCEEEE
T ss_pred c-CCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCccccc-chhhhcCCCcchHh--hhhhhcCCcCeEEEE
Confidence 5 3333 3333 8999999999999999999974 44322211 111 1 346654 569874 56778988
Q ss_pred EeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC---
Q 018318 256 YRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK--- 332 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 332 (358)
+++ ++.+.+.......+. +.+....++..++++.+.. +.+.++.+++.+++++.|.+.
T Consensus 307 ~~~---------------~i~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~ 367 (453)
T 4ffc_A 307 GRA---------------ELMDAVYAGGLGGTY-GGNPVTCAAAVAALGVMRE---LDLPARARAIEASVTSRLSALAEE 367 (453)
T ss_dssp EEH---------------HHHTTSCTTSSCCSS-SSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECH---------------HHHhhhcccCcCCCC-CcCHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 877 344444332222222 2233344444455554422 244566666677777766653
Q ss_pred -C-ceeeeCCCcceEEEEEc
Q 018318 333 -G-YSLVTGGTENHLVLWDL 350 (358)
Q Consensus 333 -G-~~~~~~~~~~~~~~v~~ 350 (358)
+ +.... ..+..+++++
T Consensus 368 ~~~~~~~~--~~g~~~~~~~ 385 (453)
T 4ffc_A 368 VDIIGEVR--GRGAMLAIEI 385 (453)
T ss_dssp CSSEEEEE--EETTEEEEEE
T ss_pred CCCeEEEE--eeceEEEEEE
Confidence 2 22222 2344566665
No 227
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.53 E-value=2.4e-13 Score=130.98 Aligned_cols=272 Identities=11% Similarity=0.001 Sum_probs=142.7
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhcC--CC
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--PH 121 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~~--~g 121 (358)
+|.|.+|+.+.+.... .+....+ ..+...++ +++++++++....+ ..++++||++|+..++..+.. .+
T Consensus 79 ~p~v~~A~~~~~~~~~--~~~~~~~--~~~~~~~l----a~~l~~~~~~~~~~--~v~~~~sGseA~~~Alk~a~~~~g~ 148 (451)
T 3oks_A 79 APKVVEAVRSQVGDFT--HTCFMVT--PYEGYVAV----CEQLNRLTPVRGDK--RSALFNSGSEAVENAVKIARSHTHK 148 (451)
T ss_dssp CHHHHHHHHHHHTTCS--CCTTTTS--CCHHHHHH----HHHHHHHSSCCSSE--EEEEESSHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcc--cccCCcc--CCHHHHHH----HHHHHHhCCcCCCC--EEEEeCcHHHHHHHHHHHHHHhcCC
Confidence 8999999988775321 1111111 12333334 47889988744211 236667889999999977653 45
Q ss_pred CeEEEecCCCCcccccccc-c----cCCcccccccceeEEeeccc---------CCCC-CCCCHHHHHHHHhh----cCC
Q 018318 122 DRIMGLDLPSGGHLTHGYY-T----SGGKKISATSIYFESLPYKV---------NSST-GYIDYDKLEEKALD----FRP 182 (358)
Q Consensus 122 d~Vl~~~~~~~~~~~~~~~-~----~~~~~~~~~g~~~~~~~~~~---------~~~~-~~id~~~l~~~l~~----~~~ 182 (358)
++|++..+.|.+....... + ..-........++..++++. +.+. ...+++.+++.+++ .++
T Consensus 149 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (451)
T 3oks_A 149 PAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNL 228 (451)
T ss_dssp CEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGE
T ss_pred CeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCE
Confidence 7888888877654211000 0 00000000111223333321 0000 01235555555543 244
Q ss_pred cEEEEcCCC--CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C-cccEEEecCCccCC-CCCe
Q 018318 183 KLIICGGSA--YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLR-GPRA 251 (358)
Q Consensus 183 ~~v~~~~~~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~-~~d~~~~s~~K~l~-g~~g 251 (358)
++|+++..+ .+...+ +++|.++|++||+++|+|++|. |+...+.. ... + ..|++ +++|+++ |.+.
T Consensus 229 aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~-~~~~~~~~~pdi~--t~sK~l~~G~~i 304 (451)
T 3oks_A 229 AAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT-GFARTGAM-FACEHEGIDPDLI--VTAKGIAGGLPL 304 (451)
T ss_dssp EEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSS-SGGGGGTCCCSEE--EECGGGGTTSSC
T ss_pred EEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCccccc-hhhhhcCCCCCee--eehhhhhCCcce
Confidence 566665322 223334 9999999999999999999975 44332211 111 1 45766 5669984 5577
Q ss_pred eEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 018318 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (358)
Q Consensus 252 G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 331 (358)
|++++++ ++.+.+.......+. +.+....++..++++.+.. +.+.++.+++.+++++.|.+
T Consensus 305 G~v~~~~---------------~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~ 365 (451)
T 3oks_A 305 SAVTGRA---------------EIMDSPHVSGLGGTY-GGNPIACAAALATIETIES---EGLVARAQQIEKIMKDRLGR 365 (451)
T ss_dssp EEEEEEH---------------HHHTCSCTTSBCCSS-SSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECH---------------HHHhhhcCCCcCCCC-CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH
Confidence 8888877 344444322222222 2233344444455554432 24556666677777777665
Q ss_pred C----C-ceeeeCCCcceEEEEEc
Q 018318 332 K----G-YSLVTGGTENHLVLWDL 350 (358)
Q Consensus 332 ~----G-~~~~~~~~~~~~~~v~~ 350 (358)
. + +.... ..+..+++++
T Consensus 366 ~~~~~~~~~~~~--~~G~~~~~~~ 387 (451)
T 3oks_A 366 LQAEDDRIGDVR--GRGAMIAMEL 387 (451)
T ss_dssp HHHHCTTEEEEE--EETTEEEEEE
T ss_pred HHhhCCCeEEEE--EeeEEEEEEE
Confidence 3 2 22222 2344566665
No 228
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.53 E-value=1.5e-13 Score=132.30 Aligned_cols=261 Identities=10% Similarity=-0.003 Sum_probs=147.0
Q ss_pred CCHHHH-H-HHhc---ccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC-CCCCCCCccccccCChHHHHHHHHh
Q 018318 43 TSFAVI-E-ALGS---ALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH-LDPTQWGVNVQPYSGSPANFAAYTA 116 (358)
Q Consensus 43 ~~~~V~-~-a~~~---~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g-~~~~~~~~~v~~~sGt~a~~~~l~a 116 (358)
.+|.|. + |+.+ .+.... +.+..+ ..+...++. ++++++++ ...+ -.+++++|++|+..++..
T Consensus 71 ~~p~v~~~~A~~~~~~~~~~~~---~~~~~~--~~~~~~~la----~~la~~~~~~~~~---~v~~~~~gseA~~~aik~ 138 (449)
T 2cjg_A 71 NPPALVDDREFHAELMQAALNK---PSNSDV--YSVAMARFV----ETFARVLGDPALP---HLFFVEGGALAVENALKA 138 (449)
T ss_dssp SCHHHHTCHHHHHHHHHHHTCC---CCTTTC--CCHHHHHHH----HHHHHHHCCTTCC---EEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcC---CCCccc--CCHHHHHHH----HHHHHhcCCCCCC---EEEEeCchHHHHHHHHHH
Confidence 489999 8 8888 543321 111112 223333443 67888886 3332 235566788999998875
Q ss_pred hc---C-----------CCCeEEEecCCCCccccccccccCCcccccccc-----------eeEEeecccCC--CC----
Q 018318 117 VL---E-----------PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI-----------YFESLPYKVNS--ST---- 165 (358)
Q Consensus 117 ~~---~-----------~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~--~~---- 165 (358)
+. . +||+|++..+.|++..... +...+. ...+..++.+. ..
T Consensus 139 a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 210 (449)
T 2cjg_A 139 AFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYT--------LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAM 210 (449)
T ss_dssp HHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTG--------GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHH
T ss_pred HHHHhcccccccccccCCCCEEEEECCCcCCcccch--------hhhcCCchhhcccCCCCCCCcEEEcCCCchhhcccc
Confidence 42 2 2899999998876643211 111111 00223333321 00
Q ss_pred ---CCCCHHHHHHHHhh--cCCcEEEEcCCC--CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC--
Q 018318 166 ---GYIDYDKLEEKALD--FRPKLIICGGSA--YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF-- 232 (358)
Q Consensus 166 ---~~id~~~l~~~l~~--~~~~~v~~~~~~--~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~-- 232 (358)
...|++++++++++ .++++|+++..+ .|...+ +++|.++|++||+++|+|++|. |+...+.. ..+
T Consensus 211 ~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~-~~~~~ 288 (449)
T 2cjg_A 211 AALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT-GCGLTGTA-WAYQQ 288 (449)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSS-STHHH
T ss_pred chhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc-CCCccCcc-eeecc
Confidence 02466779999863 356777776433 344455 9999999999999999999987 44332221 111
Q ss_pred -C-cccEEEecCCccCCCCCeeEEEEeCCCCCCCCCCCCCccccHHHHh-----hhhcCCCCcCCCChhHHHHHHHHHHH
Q 018318 233 -E-YCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKI-----NFAVFPSLQGGPHNHQIGALAVALKQ 305 (358)
Q Consensus 233 -~-~~d~~~~s~~K~l~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~al~~al~~ 305 (358)
+ ..|++ +++|+| +.|+++++++ +.+.+ .......+. +.+....++..++++.
T Consensus 289 ~~~~~di~--t~sK~l---~iG~~~~~~~---------------~~~~l~~~~~~~~~~~~t~-~~n~~~~~aa~aal~~ 347 (449)
T 2cjg_A 289 LDVAPDIV--AFGKKT---QVCGVMAGRR---------------VDEVADNVFAVPSRLNSTW-GGNLTDMVRARRILEV 347 (449)
T ss_dssp HTCCCSEE--EECGGG---SSEEEEECGG---------------GGGSTTCTTTSTTSSCCSS-SSCHHHHHHHHHHHHH
T ss_pred cCCCceEE--EecCcc---cEEEEEECHH---------------HhhhhhhcccCCcccccCC-CCCHHHHHHHHHHHHH
Confidence 2 45766 456998 4677777764 22221 111111111 2244445555566665
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHhhC----C--ceeeeCCCcceEEEEEcC
Q 018318 306 ASTPAFKAYAKQVKANAVALGNYLTGK----G--YSLVTGGTENHLVLWDLR 351 (358)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~l~~~L~~~----G--~~~~~~~~~~~~~~v~~~ 351 (358)
+.+ +...++..++.+++++.|++. + +.... ..+..+++++.
T Consensus 348 ~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~--~~g~~~~~~~~ 394 (449)
T 2cjg_A 348 IEA---EGLFERAVQHGKYLRARLDELAADFPAVVLDPR--GRGLMCAFSLP 394 (449)
T ss_dssp HHH---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEE--EETTEEEEECS
T ss_pred HHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEe--eccEEEEEEEC
Confidence 432 345677888889999988764 2 33332 23445667764
No 229
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.44 E-value=7.5e-13 Score=125.15 Aligned_cols=191 Identities=15% Similarity=0.067 Sum_probs=117.4
Q ss_pred ccccCC-hHHHHHHHHhhcCCCC----eEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHH
Q 018318 101 VQPYSG-SPANFAAYTAVLEPHD----RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEE 175 (358)
Q Consensus 101 v~~~sG-t~a~~~~l~a~~~~gd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~ 175 (358)
|++++| ++++..++.++++||| +|++..|.|.++.. .++..|..+. .+++|.+ .++
T Consensus 94 i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~---------~~~~~g~~~~--~~~~d~~--~l~------ 154 (391)
T 3bwn_A 94 IVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVE---------ETTYVRSGMY--KWEGDAW--GFD------ 154 (391)
T ss_dssp EEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHH---------HHHTTCBTTE--EEEEEST--TCC------
T ss_pred EEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHH---------HHHHcCCeEE--EecCCHH--HcC------
Confidence 555665 5699999999999999 99999998876542 2344565443 3333321 122
Q ss_pred HHhhcCCcEEEEcCCCCCC--ccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC--C-cccEEEecCCccC--CC
Q 018318 176 KALDFRPKLIICGGSAYPR--DWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF--E-YCHIVTTTTHKSL--RG 248 (358)
Q Consensus 176 ~l~~~~~~~v~~~~~~~~~--~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~--~-~~d~~~~s~~K~l--~g 248 (358)
..++++|++++++||+ ..+ +|++.++.+++++|+|++|+.+. . .++ . +.+++++|+||++ +|
T Consensus 155 ---~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~-----~-~~l~~~~~~~i~~~S~SK~~g~~G 223 (391)
T 3bwn_A 155 ---KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPH-----Y-TPITRRQDHDIMLFTFSKITGHAG 223 (391)
T ss_dssp ---CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTT-----T-SCCCCCBCCSEEEEEHHHHHSCGG
T ss_pred ---CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCC-----C-CccccCCCCeEEEEechhhcCCCc
Confidence 1368888888888773 333 45442222339999999986321 1 122 2 5689999999986 36
Q ss_pred CCeeEEEE-eCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhc---------cHHHHHHHHHH
Q 018318 249 PRAGMIFY-RKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAS---------TPAFKAYAKQV 318 (358)
Q Consensus 249 ~~gG~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~---------~~~~~~~~~~~ 318 (358)
.+.|++++ ++ ++.+.+....... ..+++.....++..++.... ...++..++++
T Consensus 224 lRiG~~~~~~~---------------~l~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 287 (391)
T 3bwn_A 224 SRIGWALVKDK---------------EVAKKMVEYIIVN-SIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMM 287 (391)
T ss_dssp GCEEEEEECCH---------------HHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHH
T ss_pred cceEEEEecCH---------------HHHHHHHHHhccc-ccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHH
Confidence 67799987 44 4544444322111 12234344444445554321 22456778888
Q ss_pred HHHHHHHHHHHhhC-Cceee
Q 018318 319 KANAVALGNYLTGK-GYSLV 337 (358)
Q Consensus 319 ~~~~~~l~~~L~~~-G~~~~ 337 (358)
.++++++.+.|++. |+++.
T Consensus 288 ~~~~~~l~~~L~~~~~~~~~ 307 (391)
T 3bwn_A 288 KNRWEKLREVVKESDAFTLP 307 (391)
T ss_dssp HHHHHHHHHHHHTCSSEECC
T ss_pred HHHHHHHHHHHHhCCCcccc
Confidence 89999999999987 66664
No 230
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.43 E-value=7.1e-12 Score=120.03 Aligned_cols=241 Identities=20% Similarity=0.126 Sum_probs=136.5
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc--CCC
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL--EPH 121 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~--~~g 121 (358)
+|+|.+|+.+.+......+ . ..+...+++ +++++.+..-. ...+++||++|+..++.... ...
T Consensus 105 hp~v~~Av~~q~~~~~~~~--~-----~~~~~~~la----e~l~~~~p~~~----~v~f~~SGsEA~e~AiklAr~~tgr 169 (454)
T 4ao9_A 105 APEIRDAVIEAMQGGINLT--G-----HNLLEGRLA----RLICERFPQIE----QLRFTNSGTEANLMALTAALHFTGR 169 (454)
T ss_dssp CHHHHHHHHHHHHTCSCCC--S-----EESSHHHHH----HHHHHHSTTCS----EEEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhcCCCcc--C-----CcHHHHHHH----HHHHHhCCCCC----EEEEeCchHHHHHHHHHHHHhcccC
Confidence 7999999988775422111 1 112223443 67777775322 23556789999999987663 234
Q ss_pred CeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhhcC--CcEEEEcC--CCCCCccc
Q 018318 122 DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFR--PKLIICGG--SAYPRDWD 197 (358)
Q Consensus 122 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~~~--~~~v~~~~--~~~~~~~~ 197 (358)
++|+.....|.+..... . ..............++ ..|++.+++.++++. ..+|+++. .+.|.+.|
T Consensus 170 ~~ii~~~~~yHG~t~~~--~---~~~~~~~~~~~~~~~p------~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p 238 (454)
T 4ao9_A 170 RKIVVFSGGYHGGVLGF--G---ARPSPTTVPFDFLVLP------YNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPG 238 (454)
T ss_dssp CEEEEETTCBCSTTCBB--S---SSBCTTSCCSEEEEEC------TTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEEC
T ss_pred CeEEEEeCCcCCccccc--c---ccccCccCCCCcccCC------CchHHHHHHHHhhcCCceEEEEeccccCCCCccCC
Confidence 68888876655432110 0 0000011111222222 468999999998754 35666653 23444444
Q ss_pred ----hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCCC-cccEEEecCCccCC-CCCeeEEEEeCCCCCCCCCCCCCc
Q 018318 198 ----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTHKSLR-GPRAGMIFYRKGPKPPKKGQPEGA 271 (358)
Q Consensus 198 ----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~~-~~d~~~~s~~K~l~-g~~gG~i~~~~~~~~~~~~~~~~~ 271 (358)
+++|.++|++||+++|+||+|. |-.+.......++ ..|+++ +.|.++ |.+.|++++++
T Consensus 239 ~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t--~gK~lggG~Piga~~~~~------------- 302 (454)
T 4ao9_A 239 QPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTT--LGKYIGGGMSFGAFGGRA------------- 302 (454)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEE--EEGGGGTTSSCEEEEECH-------------
T ss_pred chhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEE--eccccCCCCcceeeeeHH-------------
Confidence 8999999999999999999986 5332210000011 458875 457774 44567777777
Q ss_pred cccHHHHhhhhcCCCCcC---CCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 018318 272 VYDFEDKINFAVFPSLQG---GPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (358)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~---~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 331 (358)
++.+.+.....+..++ +.++..+++..++|+.+.++ ...+++.++.++|++.|++
T Consensus 303 --ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~ 360 (454)
T 4ao9_A 303 --DVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTP---EAAGALAERGEALRARLNA 360 (454)
T ss_dssp --HHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhcc---ChhHHHHHHHHHHHHHHHH
Confidence 3444443321111111 12334455545666666543 4456677777888877765
No 231
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.42 E-value=2e-13 Score=130.67 Aligned_cols=268 Identities=10% Similarity=-0.025 Sum_probs=153.7
Q ss_pred ceeEeccCCCC--CHHHHHHHhcccccC-C-CCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC--CCCCCCCccccccCC
Q 018318 33 GIELIASENFT--SFAVIEALGSALTNK-Y-SEGMPGNRYYGGNEFIDEIENLCRSRALQTFH--LDPTQWGVNVQPYSG 106 (358)
Q Consensus 33 ~~~l~a~~~~~--~~~V~~a~~~~~~~~-~-~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g--~~~~~~~~~v~~~sG 106 (358)
.+.|..+++.. ++.+.+++.+.+... . ..+|+... .|.....+|++.+.+++.+..+ ++++ .|++++|
T Consensus 58 ~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~--~G~~~~~~lr~aia~~~~~~~~~~~~~~----~iv~t~G 131 (427)
T 2hox_A 58 SADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNP--VSNFISFELEKTIKELHEVVGNAAAKDR----YIVFGVG 131 (427)
T ss_dssp CEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSS--CCTTCCHHHHHHHHHHHHHHTCBCCTTC----EEEEESH
T ss_pred eEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCC--CCccchHHHHHHHHHHHHHhCCcCCCCC----EEEEeCC
Confidence 35555554433 456677776655221 1 11233221 0211134666555555554333 3443 2444554
Q ss_pred -hHHHHHHHHhh--------cCCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHH
Q 018318 107 -SPANFAAYTAV--------LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKA 177 (358)
Q Consensus 107 -t~a~~~~l~a~--------~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l 177 (358)
++|+..++.++ ++|||+|++..|.|.++.. .++..|..+ +. +.+|++++++++
T Consensus 132 ~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~---------~~~~~g~~~--~~-------~~~d~~~l~~~~ 193 (427)
T 2hox_A 132 VTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE---------QTKYFDKKG--YV-------WAGNAANYVNVS 193 (427)
T ss_dssp HHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH---------HHHHSCBTT--EE-------EEEEGGGGTTCS
T ss_pred HHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHH---------HHHHcCCee--ee-------ecCCHHHHHHhh
Confidence 67999999999 8999999999998865431 223345432 22 246778888877
Q ss_pred hhcCCcEEEEcCCCCC--CccchHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC-CcccEEEecCCccC--CCCCee
Q 018318 178 LDFRPKLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF-EYCHIVTTTTHKSL--RGPRAG 252 (358)
Q Consensus 178 ~~~~~~~v~~~~~~~~--~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~-~~~d~~~~s~~K~l--~g~~gG 252 (358)
++ ++++|++++++|| ...+ + +++ ++..+.|++++-... . ...+ .+.+++++|+||.+ +|.+.|
T Consensus 194 ~~-~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~--s--~~~~~~~~~i~~~S~SK~~g~~G~RiG 261 (427)
T 2hox_A 194 NP-EQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHY--T--PIKYKADEDILLFTMSKFTGHSGSRFG 261 (427)
T ss_dssp CG-GGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTT--S--CCCSCBCCSEEEEEHHHHTSCGGGCCE
T ss_pred cC-CceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCC--C--ccccCCCceEEEEeChhcCCCCCceEE
Confidence 54 6888888888877 3455 3 333 567888987542110 0 0112 25789999999986 356679
Q ss_pred EEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhc----------cHHHHHHHHHHHHHH
Q 018318 253 MIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAS----------TPAFKAYAKQVKANA 322 (358)
Q Consensus 253 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~----------~~~~~~~~~~~~~~~ 322 (358)
+++++++ ++.+.+......... +.+.....++..++.... ...++..++++.+++
T Consensus 262 ~~~~~~~--------------~l~~~l~~~~~~~~~-~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (427)
T 2hox_A 262 WALIKDE--------------SVYNNLLNYMTKNTE-GTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERW 326 (427)
T ss_dssp EEEECCH--------------HHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHH
T ss_pred EEEECCH--------------HHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHH
Confidence 9999643 455555443211111 223232223333443311 112345567788889
Q ss_pred HHHHHHHhhC-Ccee--ee-----------CCCcceEEEEEcC
Q 018318 323 VALGNYLTGK-GYSL--VT-----------GGTENHLVLWDLR 351 (358)
Q Consensus 323 ~~l~~~L~~~-G~~~--~~-----------~~~~~~~~~v~~~ 351 (358)
+++.+.|++. |+++ +. .+..+..+|+++.
T Consensus 327 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~ 369 (427)
T 2hox_A 327 VNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCE 369 (427)
T ss_dssp HHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEEC
T ss_pred HHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECC
Confidence 9999999987 7765 21 1234677899875
No 232
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.11 E-value=2.3e-14 Score=138.11 Aligned_cols=250 Identities=17% Similarity=0.115 Sum_probs=144.1
Q ss_pred hcceeEeccCC--CC---CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhc-CCCCCCCCcccccc
Q 018318 31 CRGIELIASEN--FT---SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF-HLDPTQWGVNVQPY 104 (358)
Q Consensus 31 ~~~~~l~a~~~--~~---~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~-g~~~~~~~~~v~~~ 104 (358)
++++.+..+.. .+ +|.|.+|+.+.+......++ ..+...+|+ +++++++ +.+. .++++
T Consensus 100 ~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~-------~~~~~~~La----e~L~~~~p~~~~-----v~~~n 163 (465)
T 2yky_A 100 HAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLST-------QTENEALFA----EAVCDRFPSIDL-----VRFTN 163 (465)
Confidence 35666665543 23 79999998877654221111 112333444 7788888 4432 36678
Q ss_pred CChHHHHHHHHhhc--CCCCeEEEecCCCCccccccccccCCcccccccceeEEeecccCCCCCCCCHHHHHHHHhh--c
Q 018318 105 SGSPANFAAYTAVL--EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD--F 180 (358)
Q Consensus 105 sGt~a~~~~l~a~~--~~gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~l~~--~ 180 (358)
||++|+..++..+. ..+|+|++....|.+...... + | ....|.....+.++ ..|++++++++++ .
T Consensus 164 SGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~-s--g--~~~~g~~~~~~~~~------~~d~~~l~~~l~~~~~ 232 (465)
T 2yky_A 164 SGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA-S--G--HAPTNAPYHVVLGV------YNDVEGTADLLKRHGH 232 (465)
Confidence 89999999988752 356899988876654321100 0 0 00112100112221 2578999999874 3
Q ss_pred CCcEEEEcCC--CCCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C-cccEEEecCCccCCC-C
Q 018318 181 RPKLIICGGS--AYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLRG-P 249 (358)
Q Consensus 181 ~~~~v~~~~~--~~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~-~~d~~~~s~~K~l~g-~ 249 (358)
++++|+++.. +.|...+ +++|.++|++||+++|+|++|. +-. +. .... + ..|++ +++|++++ .
T Consensus 233 ~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~--g~-~~a~~~~gv~pDi~--t~sK~lg~G~ 306 (465)
T 2yky_A 233 DCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRL--SG-GGAQEMLGISADLT--TLGKYIGGGM 306 (465)
Confidence 6778877642 2344444 8999999999999999999987 421 11 1111 1 35654 67899854 4
Q ss_pred CeeEEEEeCCCCCCCCCCCCCccccHHHHhhh---h--cCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 018318 250 RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINF---A--VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVA 324 (358)
Q Consensus 250 ~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~ 324 (358)
+.|+++++++ +.+.+.. . ...++. +.+....++..++++.+.+ +...+++.++.++
T Consensus 307 piG~v~~~~~---------------i~~~l~~~~~g~~~~~~T~-~~npla~aAa~aaL~~l~~---~~~~~~~~~~~~~ 367 (465)
T 2yky_A 307 SFGAFGGRRD---------------LMERFDPARDGAFAHAGTF-NNNILTMSAGHAALTQIYT---RQAASDLSASGDR 367 (465)
Confidence 6688888875 2232322 0 011111 1222333443455655433 2456777788888
Q ss_pred HHHHHhhC
Q 018318 325 LGNYLTGK 332 (358)
Q Consensus 325 l~~~L~~~ 332 (358)
|++.|++.
T Consensus 368 l~~~L~~~ 375 (465)
T 2yky_A 368 FRANLNRI 375 (465)
Confidence 88888764
No 233
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.36 E-value=1.7e-11 Score=118.81 Aligned_cols=245 Identities=13% Similarity=0.075 Sum_probs=135.2
Q ss_pred CHHHHHHHhcccccC-CCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc----
Q 018318 44 SFAVIEALGSALTNK-YSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL---- 118 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~-~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~---- 118 (358)
+|.|.+|+.+.+... ...+. .+ +.....++++.+.++++++++...+ -.++++||++|+..++..+.
T Consensus 81 ~p~v~~A~~~~~~~~~~~~~~---~~--~~~~~~~l~~~la~~l~~~~~~~~~---~v~f~~sGseA~~~Aik~a~~~~~ 152 (472)
T 1ohv_A 81 HPALVKLVQQPQNVSTFINRP---AL--GILPPENFVEKLRESLLSVAPKGMS---QLITMACGSCSNENAFKTIFMWYR 152 (472)
T ss_dssp CHHHHHHHHCGGGHHHHHCCC---CT--TTSCBTTHHHHHHHTGGGGCCTTCC---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhccccccc---cc--ccccHHHHHHHHHHHHHHhCCCCcC---EEEEeCCchhHHHHHHHHHHHHhh
Confidence 899999998875321 11111 11 1111123443333556666643332 23667788999999997763
Q ss_pred ---C------------------CC---CeEEEecCCCCccccccccccCCcccccccce-----------eEEeecccC-
Q 018318 119 ---E------------------PH---DRIMGLDLPSGGHLTHGYYTSGGKKISATSIY-----------FESLPYKVN- 162 (358)
Q Consensus 119 ---~------------------~g---d~Vl~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----------~~~~~~~~~- 162 (358)
+ || ++|++..+.|.+..... +.+.|.. +..++++..
T Consensus 153 ~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~p~~~ 224 (472)
T 1ohv_A 153 SKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGC--------LATTHSKAIHKIDIPSFDWPIAPFPRLK 224 (472)
T ss_dssp HHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHH--------HHHCCSCHHHHTTSCCCCCCEECCCCCC
T ss_pred hhccCcccccccccccccccccccCCCCeEEEECCCcccccHHH--------HhcCCCccccccCCCCCCCcccCCCccc
Confidence 1 46 89999987766543111 1111110 001111100
Q ss_pred -C--CC-------CCCCHHHHHHHHhhc-----CCcEEEEcCC--CCCCccc----hHHHHHHHHHhCCEEEEechhhhh
Q 018318 163 -S--ST-------GYIDYDKLEEKALDF-----RPKLIICGGS--AYPRDWD----YARFRAVADKCGALLLCDMAHISG 221 (358)
Q Consensus 163 -~--~~-------~~id~~~l~~~l~~~-----~~~~v~~~~~--~~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g 221 (358)
+ .. ...|+++|+++++++ ++++|+++.. +.|...+ +++|.++|++||+++|+|++|. |
T Consensus 225 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g 303 (472)
T 1ohv_A 225 YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT-G 303 (472)
T ss_dssp SSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT-T
T ss_pred CccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCccc-C
Confidence 0 00 023789999999753 6788887642 3455556 9999999999999999999986 4
Q ss_pred hhhccccCCCCC--c----ccEEEecCCcc-CCCCCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChh
Q 018318 222 LVAAQEAANPFE--Y----CHIVTTTTHKS-LRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNH 294 (358)
Q Consensus 222 ~~~~~~~~~~~~--~----~d~~~~s~~K~-l~g~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (358)
+...+.. ..++ + .|++ +++|+ ++ ||+++ +++ +. .+......++. +.+..
T Consensus 304 ~g~~g~~-~~~~~~gv~~~~Di~--t~sK~~l~---GG~~~-~~~---------------~~-~~~~~~~~~T~-~~~~~ 359 (472)
T 1ohv_A 304 GGSTGKF-WAHEHWGLDDPADVM--TFSKKMMT---GGFFH-KEE---------------FR-PNAPYRIFNTW-LGDPS 359 (472)
T ss_dssp TTTTSSS-SGGGGGCCSSCCSEE--EECGGGSS---EEEEE-CGG---------------GS-CSSSSSSCCSS-SSCHH
T ss_pred CCCCCCc-hhccccCCCCCCCEE--EEcccccc---CCccC-chh---------------hc-ccccccccCcc-CccHH
Confidence 3322211 1111 2 6776 45698 44 57766 432 21 01111111111 22444
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 018318 295 QIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (358)
Q Consensus 295 ~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (358)
..++..++++.+.. +...+++.+++++|++.|++.
T Consensus 360 ~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l 394 (472)
T 1ohv_A 360 KNLLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLDL 394 (472)
T ss_dssp HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHH
Confidence 45555566665532 245677888888888888764
No 234
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.04 E-value=3e-08 Score=95.14 Aligned_cols=255 Identities=13% Similarity=0.009 Sum_probs=127.1
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhh--cCCC
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV--LEPH 121 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~--~~~g 121 (358)
+|+|.+|+.+.+..-. +.. .+....+...++ .++|.+++..+..+ ..++++||++|+..++... ....
T Consensus 82 ~p~v~~Ai~~q~~~~~---~~~-~~~~~~~~~~~l----ae~L~~~~p~~~~~--~v~f~~sGsEA~e~AlklAr~~t~r 151 (456)
T 4atq_A 82 DPAVVAAVQEAAAHFT---HTC-FMVTPYEGYVAV----TEQLNRLTPGDHAK--RTVLFNSGAEAVENAVKVARLATGR 151 (456)
T ss_dssp CHHHHHHHHHHHHHCS---CCT-TTTSCCHHHHHH----HHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhhcc---Ccc-cCccCcHHHHHH----HHHHHHhCCCCCCc--EEEEeCChHHHHHHHHHHHhhhhcC
Confidence 7999999887764321 111 011111222222 36778887543211 1345678999999998765 2345
Q ss_pred CeEEEecCCCCccccccccccCCccc--c--c--ccceeEEeecc--cCCC-CCCCCHHHHHHHHh-------hcCCcEE
Q 018318 122 DRIMGLDLPSGGHLTHGYYTSGGKKI--S--A--TSIYFESLPYK--VNSS-TGYIDYDKLEEKAL-------DFRPKLI 185 (358)
Q Consensus 122 d~Vl~~~~~~~~~~~~~~~~~~~~~~--~--~--~g~~~~~~~~~--~~~~-~~~id~~~l~~~l~-------~~~~~~v 185 (358)
.+|+.....|.|... +.....+... + . ....+..++++ .... ....+.+.+++.++ ..++.+|
T Consensus 152 ~~ii~~~~~yHG~t~-~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAv 230 (456)
T 4atq_A 152 DAVVAFDHAYHGRTN-LTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAI 230 (456)
T ss_dssp CEEEEETTCCCCSSH-HHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred CeEEEEecccCCccc-cccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEE
Confidence 688888766655321 0000000000 0 0 00111222222 1111 11233444444332 1245667
Q ss_pred EEcCC--CCCCcc----chHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEecCCccCC-CCCeeEEE
Q 018318 186 ICGGS--AYPRDW----DYARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPRAGMIF 255 (358)
Q Consensus 186 ~~~~~--~~~~~~----~l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s~~K~l~-g~~gG~i~ 255 (358)
+++.. +.|... =+++|.++|++||+++|+||.|. |+...+... ..++ ..|+++++ |.++ |.+.|.++
T Consensus 231 ivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~t-G~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~~av~ 307 (456)
T 4atq_A 231 IIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQS-GFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPLSAIT 307 (456)
T ss_dssp EECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCEEEE
T ss_pred EeccccCCCCccccchhhhHHHHHHHhhcCCceEeccccc-ccCCccccccccccCCCCchhhhh--hcccCcCCceeeE
Confidence 77642 233322 28999999999999999999975 433222211 1122 56988765 7774 44557777
Q ss_pred EeCCCCCCCCCCCCCccccHHHHhhhhcCCCCcCCCChhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 018318 256 YRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 331 (358)
++++ +.+.+.......+.+ .++...++..++++.+.++ ...++..+..++|.+.|++
T Consensus 308 ~~~~---------------i~~~~~~~~~~~Tf~-gnpla~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~ 364 (456)
T 4atq_A 308 GRAD---------------LLDAVHPGGLGGTYG-GNPVACAAALAAIDTMEQH---DLNGRARHIEELALGKLRE 364 (456)
T ss_dssp EEHH---------------HHTTSCTTSSCCSSS-SCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHH
T ss_pred ecHH---------------HHhcccccCCCCCCC-CChHHHHhhHHHHHHHhhc---cHHHHHHHHHHHHHHHHHH
Confidence 7763 333333222222222 2334444445556655433 3345555566666666654
No 235
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=98.82 E-value=1.4e-07 Score=90.95 Aligned_cols=253 Identities=14% Similarity=0.082 Sum_probs=126.9
Q ss_pred CHHHHHHHhcccccCCCCCCCCCCCCC-CchhHHHHHHHHHHHHHHhcCCCCCCCCccccccCChHHHHHHHHhhc----
Q 018318 44 SFAVIEALGSALTNKYSEGMPGNRYYG-GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL---- 118 (358)
Q Consensus 44 ~~~V~~a~~~~~~~~~~~g~~~~~~~~-~~~~~~~le~~~~~~la~~~g~~~~~~~~~v~~~sGt~a~~~~l~a~~---- 118 (358)
+|+|.+|+.+.+..-.. + + .++. ..+...+ ..++|.++.....+ -..+++||++|+..++....
T Consensus 85 ~p~v~~Ai~~q~~~l~~--~-~-~~~~~~~~~~~~----lAe~L~~~~p~~~~---~v~f~~sGsEA~e~AiKlAr~~~~ 153 (473)
T 4e3q_A 85 HKGLIDAAKAQYERFPG--Y-H-AFFGRMSDQTVM----LSEKLVEVSPFDSG---RVFYTNSGSEANDTMVKMLWFLHA 153 (473)
T ss_dssp CHHHHHHHHHHHHHCCC--C-C-CCTTEEEHHHHH----HHHHHHHHSSCSSC---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccc--c-c-ccccccCHHHHH----HHHHHHhhCCCCcc---EEEEeCchHHHHHHHHHHHHHHHH
Confidence 79999998887654211 1 0 1111 1122222 34778888764432 23556789999999987642
Q ss_pred ---CCC-CeEEEecCCCCccccccccccCCccc------ccccceeEEeecc----cCCCCCC-------CCHHHHHHHH
Q 018318 119 ---EPH-DRIMGLDLPSGGHLTHGYYTSGGKKI------SATSIYFESLPYK----VNSSTGY-------IDYDKLEEKA 177 (358)
Q Consensus 119 ---~~g-d~Vl~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~----~~~~~~~-------id~~~l~~~l 177 (358)
+++ .+|+.....|.|... +.....+... ...+ +..++.+ ... .+. ...+++++.+
T Consensus 154 ~~g~~~r~~ii~~~~~yHG~t~-~a~s~tg~~~~~~~~~~~~~--~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~l~~~i 229 (473)
T 4e3q_A 154 AEGKPQKRKILTRWNAYHGVTA-VSASMTGKPYNSVFGLPLPG--FVHLTCPHYWRYGE-EGETEEQFVARLARELEETI 229 (473)
T ss_dssp HTTCTTCCEEEEETTCCCCSSH-HHHHHSCCGGGGGGTCSCTT--EEEECCCCHHHHSC-TTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcceEEEeeceECCCcc-ccccccccccccccCCCCCc--ccccCCCccccccc-ccchhhHHHHHHHHHHHHHH
Confidence 233 467777765544210 0000000000 0011 1111111 110 111 1134556666
Q ss_pred hhcC---CcEEEEcCC--CCCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccC--CCCC-cccEEEecCCcc
Q 018318 178 LDFR---PKLIICGGS--AYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKS 245 (358)
Q Consensus 178 ~~~~---~~~v~~~~~--~~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~--~~~~-~~d~~~~s~~K~ 245 (358)
.+.. ..+|++... ..|...+ +++|.++|++||+++|+||.|. |+...+... ..++ ..|++++ .|.
T Consensus 230 ~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~t-GfGRtG~~fa~e~~gv~PDi~t~--~K~ 306 (473)
T 4e3q_A 230 QREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVIC-GFGRTGNTWGCVTYDFTPDAIIS--SKN 306 (473)
T ss_dssp HHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTT-SSSTTSSSCHHHHTTCCCSEEEE--CGG
T ss_pred HhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccc-cCCcccchhHHHhcCCCCChHHh--ccc
Confidence 5433 345666532 2333221 8899999999999999999974 543222110 0112 4688765 588
Q ss_pred CC-C-CCeeEEEEeCCCCCCCCCCCCCccccHHHHhhhh---cCCCCcC---CCChhHHHHHHHHHHHhccHHHHHHHHH
Q 018318 246 LR-G-PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA---VFPSLQG---GPHNHQIGALAVALKQASTPAFKAYAKQ 317 (358)
Q Consensus 246 l~-g-~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~al~~al~~~~~~~~~~~~~~ 317 (358)
++ | .+.|.++++++ +.+.+... ..+...+ +.++...++..++++.+.+ +...++
T Consensus 307 l~gG~~Pl~av~~~~~---------------i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~---~~l~~~ 368 (473)
T 4e3q_A 307 LTAGFFPMGAVILGPE---------------LSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMN---EGLAEN 368 (473)
T ss_dssp GGTTSSCCEEEEECHH---------------HHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHH---SSHHHH
T ss_pred ccCCCCCcccccccHH---------------HHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhcc---ccHHHH
Confidence 74 3 46677777773 44433221 0111111 1233334444455555543 244566
Q ss_pred HHHHHHHHHHHHhhC
Q 018318 318 VKANAVALGNYLTGK 332 (358)
Q Consensus 318 ~~~~~~~l~~~L~~~ 332 (358)
..+..++|++.|+++
T Consensus 369 ~~~~g~~l~~~L~~l 383 (473)
T 4e3q_A 369 VRRLAPRFEERLKHI 383 (473)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677778888877653
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.37 E-value=2.1e-06 Score=88.24 Aligned_cols=85 Identities=9% Similarity=-0.044 Sum_probs=53.5
Q ss_pred HHHHHHHhh-------cCCcEEEEcCC--C-CCCccc----hHHHHHHHHHhCCEEEEechhhhhhhhccccCCCC---C
Q 018318 171 DKLEEKALD-------FRPKLIICGGS--A-YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E 233 (358)
Q Consensus 171 ~~l~~~l~~-------~~~~~v~~~~~--~-~~~~~~----l~~i~~la~~~g~~lvvD~a~~~g~~~~~~~~~~~---~ 233 (358)
+++++.|++ .++.+|+++.. . .|...+ +++|.++|++||+++|+|++|. |+...|... .. +
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~t-GfGRtG~~f-a~e~~g 654 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFT-GFWRLGVET-TTELLG 654 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTT-TTTTTSBSS-THHHHS
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCcc-ccccCCCch-hhHhcC
Confidence 567777752 23457777653 2 233322 8999999999999999999964 443222211 11 1
Q ss_pred -cccEEEecCCccCCC--CCeeEEEEeCC
Q 018318 234 -YCHIVTTTTHKSLRG--PRAGMIFYRKG 259 (358)
Q Consensus 234 -~~d~~~~s~~K~l~g--~~gG~i~~~~~ 259 (358)
..|++ ++.|.|+| .+.|+++++++
T Consensus 655 v~PDii--tlsK~L~gG~~Plgav~~~~~ 681 (831)
T 4a0g_A 655 CKPDIA--CFAKLLTGGMVPLAVTLATDA 681 (831)
T ss_dssp SCCSEE--EECGGGGTTSSCCEEEEECHH
T ss_pred CCCcEE--EEecccccCccCcEEEEECHH
Confidence 35776 57899865 35688888773
No 237
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=59.36 E-value=13 Score=29.41 Aligned_cols=43 Identities=12% Similarity=-0.081 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhC
Q 018318 167 YIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCG 209 (358)
Q Consensus 167 ~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g 209 (358)
...++++.+++.+.++.+|.++.........++++.+.+++.+
T Consensus 55 ~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 55 RQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELG 97 (161)
T ss_dssp BCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcC
Confidence 4788999888888899998887665555556778877777754
No 238
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=51.33 E-value=31 Score=28.39 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=40.3
Q ss_pred eEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhC----CEEEEec
Q 018318 154 FESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCG----ALLLCDM 216 (358)
Q Consensus 154 ~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g----~~lvvD~ 216 (358)
++++.+. ..+.++++.+++++.+|.+|.++....+....+.++.+.+++.+ +.+++=+
T Consensus 117 ~~v~~LG-----~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 117 FTVYNLG-----VDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp CEEEECC-----SSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEES
T ss_pred CEEEECC-----CCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEC
Confidence 4555553 25788999998888899998887655444446777877777754 6666643
No 239
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=50.85 E-value=27 Score=26.11 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHhhc---CC-----cEEEEcCCCCCCccchHHHHHHHHHhCCEEE
Q 018318 167 YIDYDKLEEKALDF---RP-----KLIICGGSAYPRDWDYARFRAVADKCGALLL 213 (358)
Q Consensus 167 ~id~~~l~~~l~~~---~~-----~~v~~~~~~~~~~~~l~~i~~la~~~g~~lv 213 (358)
..|++.+.+.|++. .| .-|+++.+......++++|.++++++|..++
T Consensus 24 ~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~~~~dl~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 24 EAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLESPVNWPELHKIVTSTGLRII 78 (120)
T ss_dssp SCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECCSSCCHHHHHHHHHTTTCEEE
T ss_pred CCCHHHHHHHHHHHHHhChHhhCCCcEEEEccccCChHHHHHHHHHHHHcCCEEE
Confidence 36777776666441 11 2455554332234689999999999998774
No 240
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=50.75 E-value=49 Score=28.49 Aligned_cols=59 Identities=10% Similarity=0.248 Sum_probs=40.6
Q ss_pred eeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCC---CccchHHHHHHHHHhC----CEEEEec
Q 018318 153 YFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP---RDWDYARFRAVADKCG----ALLLCDM 216 (358)
Q Consensus 153 ~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~---~~~~l~~i~~la~~~g----~~lvvD~ 216 (358)
+++++.+.. .+.++++-+++.++++.+|.++..... ....+.++.+.+++.| +.+++=.
T Consensus 157 G~eVi~LG~-----~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG 222 (262)
T 1xrs_B 157 MIDAYNLGS-----QVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGG 222 (262)
T ss_dssp TEEEEECCS-----SBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEEC
T ss_pred CcEEEECCC-----CCCHHHHHHHHHHcCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence 356665532 578999988888889999988766655 3445677777777765 5565533
No 241
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=43.18 E-value=23 Score=27.09 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=34.3
Q ss_pred eEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhC
Q 018318 154 FESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCG 209 (358)
Q Consensus 154 ~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g 209 (358)
++++.+.. ...++++.+++.++++.+|.++.+.......++++.+..++.|
T Consensus 32 ~~Vi~lG~-----~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 32 FNVVNIGV-----LSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp CEEEEEEE-----EECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTT
T ss_pred CEEEECCC-----CCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcC
Confidence 45555532 4778998888888889988887665544444666676666653
No 242
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=41.59 E-value=32 Score=23.67 Aligned_cols=45 Identities=11% Similarity=-0.030 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEec
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDM 216 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~ 216 (358)
...+.+++++.+.++|++.....+ .-...|..+|++++++++.-.
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~~--~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 16 TKQTVKALKRGSVKEVVVAKDADP--ILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHHTTTCEEEEEEETTSCH--HHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHcCCeeEEEEeCCCCH--HHHHHHHHHHHHcCCCEEEEC
Confidence 456777787666788877543222 235688899999999877644
No 243
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=40.05 E-value=71 Score=23.87 Aligned_cols=51 Identities=8% Similarity=-0.095 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEechh
Q 018318 167 YIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAH 218 (358)
Q Consensus 167 ~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a~ 218 (358)
.+++++++.+++. +|.+|+++.-.......-+++.+..+++|+-+-+-.+.
T Consensus 48 ~l~~~~l~~ll~~-~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 48 GVQPADVKEVVEK-GVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp CCCHHHHHHHHTT-CCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred HCCHHHHHHHhhC-CCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 4889999999874 78999887554443223467888889999877665553
No 244
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=37.91 E-value=54 Score=28.46 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=39.2
Q ss_pred CCC-CCHHHHHHHHhhc----CCcEEEE--cCCCCC----CccchHHHHHHHHHhCCEEEEechhhhh
Q 018318 165 TGY-IDYDKLEEKALDF----RPKLIIC--GGSAYP----RDWDYARFRAVADKCGALLLCDMAHISG 221 (358)
Q Consensus 165 ~~~-id~~~l~~~l~~~----~~~~v~~--~~~~~~----~~~~l~~i~~la~~~g~~lvvD~a~~~g 221 (358)
+|. .++++++.+++.- +++++++ |.+.++ ...++..|..+.+.+++.+++|..|+.|
T Consensus 152 ~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~~lpVi~dssH~~g 219 (276)
T 1vs1_A 152 RGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVIVDPSHPAG 219 (276)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHBSSCEEECCHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHhCCCEEEeCCCCCC
Confidence 455 4888887776531 2465554 433443 3457888888877789999999999876
No 245
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=36.77 E-value=52 Score=29.64 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHhh---cCCcEEEE-cCCCCCC---ccchHHHHHHHHHh-CCEEEEechhhhhhhhccccCCCCC-cc
Q 018318 165 TGYIDYDKLEEKALD---FRPKLIIC-GGSAYPR---DWDYARFRAVADKC-GALLLCDMAHISGLVAAQEAANPFE-YC 235 (358)
Q Consensus 165 ~~~id~~~l~~~l~~---~~~~~v~~-~~~~~~~---~~~l~~i~~la~~~-g~~lvvD~a~~~g~~~~~~~~~~~~-~~ 235 (358)
+|.-++++++.+++- ....++++ |.+.+|. ..+|..|..+.+.+ ++++ .|..|..|....- -.+. |+
T Consensus 155 tGmat~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpV-g~sdHt~G~~~~~---AAvAlGA 230 (349)
T 2wqp_A 155 TGMNSIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAII-GLSDHTLDNYACL---GAVALGG 230 (349)
T ss_dssp CTTCCHHHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEE-EEECCSSSSHHHH---HHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCE-EeCCCCCcHHHHH---HHHHhCC
Confidence 344478887766532 23355554 6677764 35789999999999 8887 6888988732110 0112 88
Q ss_pred cEE--EecCCccCCCCCeeEEEEeC
Q 018318 236 HIV--TTTTHKSLRGPRAGMIFYRK 258 (358)
Q Consensus 236 d~~--~~s~~K~l~g~~gG~i~~~~ 258 (358)
|++ -+++.|++.|+.+..-+.++
T Consensus 231 ~iIEkH~tld~a~~G~D~~~SL~p~ 255 (349)
T 2wqp_A 231 SILERHFTDRMDRPGPDIVCSMNPD 255 (349)
T ss_dssp CEEEEEBCSCTTCCSTTGGGCBCHH
T ss_pred CEEEeCCCccccCCCCChhhhCCHH
Confidence 865 57888998887664433333
No 246
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=36.65 E-value=70 Score=27.47 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=39.2
Q ss_pred CCC-CCHHHHHHHHhhc----CCcEEEEc-----CCCCC-CccchHHHHHHHHHhCCEEEEechhhhhh
Q 018318 165 TGY-IDYDKLEEKALDF----RPKLIICG-----GSAYP-RDWDYARFRAVADKCGALLLCDMAHISGL 222 (358)
Q Consensus 165 ~~~-id~~~l~~~l~~~----~~~~v~~~-----~~~~~-~~~~l~~i~~la~~~g~~lvvD~a~~~g~ 222 (358)
+|. .+++++..+++.. ++.++++. .++++ ...++..+..+.+.++..+++|..|+.|.
T Consensus 137 ~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~d~sH~~g~ 205 (262)
T 1zco_A 137 RGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAGR 205 (262)
T ss_dssp CCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSSTTTCS
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEEEcCCCCCc
Confidence 444 4888888777432 24555432 23444 34578888888888899999999998763
No 247
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=36.34 E-value=49 Score=30.29 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=39.8
Q ss_pred CCC-CCHHHHHHHHhhc----CCcEEEE-c-CCCCCC----ccchHHHHHHHHHhCCEEEEechhhhh
Q 018318 165 TGY-IDYDKLEEKALDF----RPKLIIC-G-GSAYPR----DWDYARFRAVADKCGALLLCDMAHISG 221 (358)
Q Consensus 165 ~~~-id~~~l~~~l~~~----~~~~v~~-~-~~~~~~----~~~l~~i~~la~~~g~~lvvD~a~~~g 221 (358)
+|. .++++++.+++.- +.+++++ + .+.++. ..++..|..+.+.++++|++|.+|+.|
T Consensus 256 ~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~~lpV~~D~th~~G 323 (385)
T 3nvt_A 256 RGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHLPVMVDVTHSTG 323 (385)
T ss_dssp CCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEEEHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhcCCCEEEcCCCCCC
Confidence 454 7888887766532 3456554 3 455543 357888888888889999999999865
No 248
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=35.83 E-value=19 Score=33.71 Aligned_cols=28 Identities=7% Similarity=0.190 Sum_probs=25.2
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..++++|.+-||++|+.||+|..
T Consensus 71 ~~~Gt~~df~~lv~~aH~~Gi~VilD~V 98 (496)
T 4gqr_A 71 TRSGNEDEFRNMVTRCNNVGVRIYVDAV 98 (496)
T ss_dssp BTTBCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 5577778999999999999999999996
No 249
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=35.32 E-value=84 Score=23.31 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccc-hHHHHHHHHHhCCEEE-Eechhhhh
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWD-YARFRAVADKCGALLL-CDMAHISG 221 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~-l~~i~~la~~~g~~lv-vD~a~~~g 221 (358)
...+.+++++.+.++|++.....+ .. ...|..+|++++++++ ++.-.-+|
T Consensus 25 ~~~v~kai~~gkakLViiA~D~~~--~~~~~~l~~lc~~~~VP~~~v~sk~eLG 76 (121)
T 2lbw_A 25 VKEVVKALRKGEKGLVVIAGDIWP--ADVISHIPVLCEDHSVPYIFIPSKQDLG 76 (121)
T ss_dssp HHHHHHHHHHSCCCEEEECTTCSC--TTHHHHHHHHHHHTCCCEEECCCHHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHHH
Confidence 456677777767888887643222 22 5678899999999874 44333344
No 250
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.64 E-value=67 Score=22.80 Aligned_cols=42 Identities=17% Similarity=-0.026 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEE
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLL 213 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lv 213 (358)
.+.+.+++++.+.++|++... .+ ..-...|..+|++++++++
T Consensus 20 ~~~v~kai~~gka~lViiA~D-~~-~~~~~~i~~~c~~~~ip~~ 61 (99)
T 3j21_Z 20 SNETIRLAKTGGAKLIIVAKN-AP-KEIKDDIYYYAKLSDIPVY 61 (99)
T ss_dssp HHHHHHHHHHTCCSEEEEECC-CC-HHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHcCCccEEEEeCC-CC-HHHHHHHHHHHHHcCCCEE
Confidence 466777887767888877533 33 2336788889999999864
No 251
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=33.40 E-value=1.1e+02 Score=25.61 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=35.3
Q ss_pred CHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 169 DYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 169 d~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.++++++++ .....|++.......+..++++.+.++++|..+++|..
T Consensus 90 ~~~~i~~~~~-~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~ 137 (232)
T 3igs_A 90 FLDDVDALAQ-AGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCS 137 (232)
T ss_dssp SHHHHHHHHH-HTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECC
T ss_pred cHHHHHHHHH-cCCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCC
Confidence 4567777765 47777777655433345789999999999999999864
No 252
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=33.33 E-value=1.2e+02 Score=25.28 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=35.4
Q ss_pred CHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 169 DYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 169 d~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.++++++++ .....|++..+....+..++++.+.++++|..+++|..
T Consensus 90 ~~~~i~~~~~-aGad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~ 137 (229)
T 3q58_A 90 YLQDVDALAQ-AGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCS 137 (229)
T ss_dssp SHHHHHHHHH-HTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECS
T ss_pred cHHHHHHHHH-cCCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecC
Confidence 3567777665 47777877655433345789999999999999999864
No 253
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=32.92 E-value=69 Score=29.25 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHhh---cC-CcEEEE-cCCCCCC---ccchHHHHHHHHHh-CCEEEEechhhhh-hhhccccCCCCC-
Q 018318 165 TGYIDYDKLEEKALD---FR-PKLIIC-GGSAYPR---DWDYARFRAVADKC-GALLLCDMAHISG-LVAAQEAANPFE- 233 (358)
Q Consensus 165 ~~~id~~~l~~~l~~---~~-~~~v~~-~~~~~~~---~~~l~~i~~la~~~-g~~lvvD~a~~~g-~~~~~~~~~~~~- 233 (358)
+|.-++++++.+++- .. ..++++ |.+.+|. ..+|..|..+.+.+ ++.+ .|..|..| ....- -.+.
T Consensus 165 tGmaTl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpV-G~SdHt~G~~~~~~---AAvAl 240 (385)
T 1vli_A 165 TAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVI-GFSDHSEHPTEAPC---AAVRL 240 (385)
T ss_dssp CTTCCHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEE-EEEECCSSSSHHHH---HHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCE-EeCCCCCCchHHHH---HHHHc
Confidence 344578887776642 22 355554 6677764 34788999999999 8887 78889887 32210 0012
Q ss_pred cccEE--EecCCccCCCCCeeEEEEeC
Q 018318 234 YCHIV--TTTTHKSLRGPRAGMIFYRK 258 (358)
Q Consensus 234 ~~d~~--~~s~~K~l~g~~gG~i~~~~ 258 (358)
|+|++ -+++.|++.|+.+.+-+.++
T Consensus 241 GA~iIEkHftldra~~G~D~~~SL~P~ 267 (385)
T 1vli_A 241 GAKLIEKHFTIDKNLPGADHSFALNPD 267 (385)
T ss_dssp TCSEEEEEBCSCTTSSCSSCTTSBCHH
T ss_pred CCCEEEeCCCccccCCCCchhhhCCHH
Confidence 78865 57888998887654333333
No 254
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=32.56 E-value=1.9e+02 Score=23.94 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=26.8
Q ss_pred HHHHHHHhh----cCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEec
Q 018318 171 DKLEEKALD----FRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDM 216 (358)
Q Consensus 171 ~~l~~~l~~----~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~ 216 (358)
+++.+.+.+ .++.+|+++...+-...-++.+..+++ .|+.+++=+
T Consensus 75 ~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~-~gi~Vil~G 123 (223)
T 2b8t_A 75 PEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAE-NGFVVIISG 123 (223)
T ss_dssp HHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHH-TTCEEEEEC
T ss_pred HHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHh-CCCeEEEEe
Confidence 445555543 247788888665543333556666666 488887733
No 255
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=32.26 E-value=28 Score=32.35 Aligned_cols=28 Identities=11% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.||+|..
T Consensus 64 p~~Gt~~df~~lv~~aH~~Gi~VilD~V 91 (441)
T 1lwj_A 64 AEYGSEREFKEMIEAFHDSGIKVVLDLP 91 (441)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 5566677899999999999999999986
No 256
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=32.25 E-value=73 Score=22.67 Aligned_cols=51 Identities=18% Similarity=-0.083 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEE--echhhhhh
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC--DMAHISGL 222 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvv--D~a~~~g~ 222 (358)
.+.+.+++++.+.++|++... .+ ..-...|..+|++++++++. +...-+|.
T Consensus 21 ~~~v~kai~~gka~lViiA~D-~~-~~~~~~l~~~c~~~~vp~~~~~~s~~eLG~ 73 (101)
T 1w41_A 21 ARKSIQYAKMGGAKLIIVARN-AR-PDIKEDIEYYARLSGIPVYEFEGTSVELGT 73 (101)
T ss_dssp HHHHHHHHHHTCCSEEEEETT-SC-HHHHHHHHHHHHHHTCCEEEESSCHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEeCC-CC-HHHHHHHHHHHHhcCCCEEEecCCHHHHHH
Confidence 466777787767788877533 22 22356888899999988553 44434553
No 257
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=32.06 E-value=66 Score=28.98 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=38.6
Q ss_pred CCC-CCHHHHHHHHhh---c-CCcEEEE--cCCCCC----CccchHHHHHHHHHhCCEEEEechhhhh
Q 018318 165 TGY-IDYDKLEEKALD---F-RPKLIIC--GGSAYP----RDWDYARFRAVADKCGALLLCDMAHISG 221 (358)
Q Consensus 165 ~~~-id~~~l~~~l~~---~-~~~~v~~--~~~~~~----~~~~l~~i~~la~~~g~~lvvD~a~~~g 221 (358)
+|. .++++++.+++. . +++++++ +.+.++ ...++..|..+.+.+++.+++|..|+.|
T Consensus 220 ~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~~~~~vdl~ai~~lk~~~~lpVi~dssHs~G 287 (350)
T 1vr6_A 220 RGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGG 287 (350)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcChhhhhHHHHHHHHHhhCCCEEEeCCCCCc
Confidence 454 478887776643 1 3466654 133332 3457888888888889999999999876
No 258
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=32.03 E-value=71 Score=27.23 Aligned_cols=56 Identities=5% Similarity=0.129 Sum_probs=38.3
Q ss_pred eEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhC--CEEEE
Q 018318 154 FESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCG--ALLLC 214 (358)
Q Consensus 154 ~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g--~~lvv 214 (358)
++++.+.. .+.++++.+++.+++|.+|.++....+....+.++.+..++.+ +.+++
T Consensus 152 ~~Vi~LG~-----~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~~~~v~v 209 (258)
T 2i2x_B 152 YNVVDLGR-----DVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFAC 209 (258)
T ss_dssp CEEEEEEE-----ECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEE
T ss_pred CEEEECCC-----CCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcCCCCcEEE
Confidence 45555543 3678888888888899999887665555556778887777654 44444
No 259
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=30.85 E-value=74 Score=23.13 Aligned_cols=51 Identities=12% Similarity=-0.025 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEE-E-echhhhhh
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLL-C-DMAHISGL 222 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lv-v-D~a~~~g~ 222 (358)
.+.+.+++++.+.++|++.... + ..-...|..+|++++++++ + +...-+|.
T Consensus 26 ~~~v~kai~~gka~lViiA~D~-~-~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~ 78 (110)
T 3cpq_A 26 SKRTIKFVKHGEGKLVVLAGNI-P-KDLEEDVKYYAKLSNIPVYQHKITSLELGA 78 (110)
T ss_dssp HHHHHHHHHTTCCSEEEECTTC-B-HHHHHHHHHHHHHTTCCEEECCSCHHHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCC-C-HHHHHHHHHHHHHcCCCEEEEcCCHHHHHH
Confidence 4667777876667888775332 2 2235688889999998854 3 33333443
No 260
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=30.84 E-value=75 Score=28.73 Aligned_cols=50 Identities=8% Similarity=-0.118 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEe
Q 018318 166 GYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCD 215 (358)
Q Consensus 166 ~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD 215 (358)
...+++++++.++.....+|.+.....|......+++++|+++|+.+++=
T Consensus 245 ~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~ 294 (379)
T 2rdx_A 245 CVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAE 294 (379)
T ss_dssp TCCSHHHHHHHHHHTCCSEEEEETTTTTSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeEEEe
Confidence 35688999999987667888888777777777889999999999887775
No 261
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=30.64 E-value=29 Score=32.71 Aligned_cols=28 Identities=7% Similarity=0.044 Sum_probs=25.0
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.||+|..
T Consensus 73 ~~~Gt~~df~~lv~~aH~~Gi~VilD~V 100 (483)
T 3bh4_A 73 TKYGTKSELQDAIGSLHSRNVQVYGDVV 100 (483)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 5567778999999999999999999986
No 262
>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*
Probab=30.03 E-value=79 Score=28.38 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEE
Q 018318 167 YIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC 214 (358)
Q Consensus 167 ~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvv 214 (358)
..+++++++.++.....+|.+.....|......+++++|+++|+.+++
T Consensus 242 ~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~ 289 (368)
T 1sjd_A 242 IVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWC 289 (368)
T ss_dssp CCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEe
Confidence 467888888887655677877766667666788999999999998554
No 263
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=29.83 E-value=30 Score=32.57 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=24.9
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.||+|..
T Consensus 77 p~~Gt~~df~~Lv~~aH~~Gi~VilD~V 104 (485)
T 1wpc_A 77 TKYGTRSQLQAAVTSLKNNGIQVYGDVV 104 (485)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 4567778899999999999999999986
No 264
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=29.63 E-value=31 Score=32.38 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=24.8
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.||+|..
T Consensus 75 p~~Gt~~df~~lv~~aH~~Gi~VilD~V 102 (480)
T 1ud2_A 75 TKYGTKAQLERAIGSLKSNDINVYGDVV 102 (480)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 4567778899999999999999999986
No 265
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=29.38 E-value=32 Score=31.53 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=24.6
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.||+|..
T Consensus 63 ~~~Gt~~d~~~lv~~~h~~Gi~VilD~V 90 (405)
T 1ht6_A 63 SKYGNAAELKSLIGALHGKGVQAIADIV 90 (405)
T ss_dssp CTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 5566777899999999999999999996
No 266
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=29.36 E-value=28 Score=32.42 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=24.9
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.||+|..
T Consensus 59 p~~Gt~~dfk~Lv~~aH~~Gi~VilD~V 86 (448)
T 1g94_A 59 SRGGNRAQFIDMVNRCSAAGVDIYVDTL 86 (448)
T ss_dssp BTTBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 5567778899999999999999999986
No 267
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=29.25 E-value=70 Score=27.88 Aligned_cols=53 Identities=23% Similarity=0.441 Sum_probs=34.5
Q ss_pred CCHHHHHHHHhh----cCCcEEEE-cCCCCCCc---cchHHHHHHHHHh-CCEEEEechhhh
Q 018318 168 IDYDKLEEKALD----FRPKLIIC-GGSAYPRD---WDYARFRAVADKC-GALLLCDMAHIS 220 (358)
Q Consensus 168 id~~~l~~~l~~----~~~~~v~~-~~~~~~~~---~~l~~i~~la~~~-g~~lvvD~a~~~ 220 (358)
.++++++.+++. -+.+++++ +.+.++.. .|+..|..+.+.+ |+++++|..|+.
T Consensus 145 ~t~~ei~~ave~i~~~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~~~pV~~D~sHs~ 206 (285)
T 3sz8_A 145 MSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSL 206 (285)
T ss_dssp SCGGGTHHHHHHHHHTTCCCEEEEECCEECSSSCEECCTTHHHHHHHHTTSCCEEEETTTTC
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCcCccCHHHHHHHHHhCCCCCEEEeCCCcc
Confidence 466555444432 23466554 34555532 4788988888777 799999999983
No 268
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=29.23 E-value=32 Score=32.74 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.||+|..
T Consensus 76 p~~Gt~~dfk~Lv~~aH~~Gi~VilD~V 103 (515)
T 1hvx_A 76 TKYGTKAQYLQAIQAAHAAGMQVYADVV 103 (515)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 5567778999999999999999999986
No 269
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=29.22 E-value=33 Score=32.68 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=23.3
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..++++|.+-||++|+.||.|-+
T Consensus 74 p~~Gt~~dfk~Lv~~aH~~Gi~VilD~V 101 (549)
T 4aie_A 74 PQYGTMADMDELISKAKEHHIKIVMDLV 101 (549)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4556666789999999999999999986
No 270
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=28.83 E-value=33 Score=32.80 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=24.8
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.||+|..
T Consensus 87 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V 114 (527)
T 1gcy_A 87 GRYGSDAQLRQAASALGGAGVKVLYDVV 114 (527)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 5667778899999999999999999986
No 271
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=28.64 E-value=31 Score=23.96 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhCCEEEEech
Q 018318 198 YARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 198 l~~i~~la~~~g~~lvvD~a 217 (358)
-++|.++|+++|+.++.|-.
T Consensus 29 A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 46999999999999999985
No 272
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=28.60 E-value=1.1e+02 Score=27.78 Aligned_cols=50 Identities=8% Similarity=-0.077 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEe
Q 018318 166 GYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCD 215 (358)
Q Consensus 166 ~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD 215 (358)
...++++++++++.....+|.+.....|......+++++|+++|+.+++=
T Consensus 253 ~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~ 302 (383)
T 3i4k_A 253 SVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLACHGA 302 (383)
T ss_dssp TCSSHHHHHHHHHHTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred ccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEeC
Confidence 35678889998876557888888777777778899999999999998764
No 273
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=28.55 E-value=34 Score=31.74 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=24.6
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.|++|..
T Consensus 81 ~~~Gt~~df~~lv~~~H~~Gi~VilD~V 108 (435)
T 1mxg_A 81 TRFGSKEELVRLIQTAHAYGIKVIADVV 108 (435)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 5567778899999999999999999986
No 274
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=28.32 E-value=63 Score=26.75 Aligned_cols=58 Identities=7% Similarity=0.005 Sum_probs=39.4
Q ss_pred eeEEeecccCCCCCCCCHHHHHHHHhhcCCcEEEE--cCCCCCCccchHHHHHHHHHhC----CEEEEe
Q 018318 153 YFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC--GGSAYPRDWDYARFRAVADKCG----ALLLCD 215 (358)
Q Consensus 153 ~~~~~~~~~~~~~~~id~~~l~~~l~~~~~~~v~~--~~~~~~~~~~l~~i~~la~~~g----~~lvvD 215 (358)
+++++.+.. .+.++++-+++.+++|.+|.+ +....+....++++.+.+++.+ +.+++=
T Consensus 120 G~~Vi~LG~-----~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vG 183 (215)
T 3ezx_A 120 GFQIVDLGV-----DVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFG 183 (215)
T ss_dssp SCEEEECCS-----SCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEE
T ss_pred CCeEEEcCC-----CCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 355665532 578999988888889998888 6554444445777777777765 455553
No 275
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=27.96 E-value=97 Score=23.53 Aligned_cols=44 Identities=7% Similarity=-0.017 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEE
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC 214 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvv 214 (358)
...+.+++++.+.++|++.....+. .-...|..+|+++|++++.
T Consensus 37 ~~~v~kai~~gkakLViiA~D~~p~-~~~~~l~~lc~~~~VP~~~ 80 (134)
T 2ale_A 37 ANEATKTLNRGISEFIIMAADCEPI-EILLHLPLLCEDKNVPYVF 80 (134)
T ss_dssp HHHHHHHHHHTCEEEEEEETTCSSG-GGGTHHHHHHHHHTCCEEE
T ss_pred chHHHHHHHhCCCeEEEEeCCCCHH-HHHHHHHHHHHhcCCCEEE
Confidence 4566777776667888775432221 1256788999999998543
No 276
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=27.87 E-value=36 Score=31.93 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.4
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.||+|.+
T Consensus 92 p~~Gt~~df~~lv~~~H~~Gi~VilD~V 119 (478)
T 2guy_A 92 ENYGTADDLKALSSALHERGMYLMVDVV 119 (478)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 6677777899999999999999999985
No 277
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=27.73 E-value=1.2e+02 Score=22.66 Aligned_cols=51 Identities=6% Similarity=-0.055 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEE-Eechhhhh
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLL-CDMAHISG 221 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lv-vD~a~~~g 221 (358)
.....+++++.+.++|++.....+ ..-...|..+|++++++++ ++.-.-+|
T Consensus 29 ~~~v~Kai~~gka~LViiA~D~~p-~~~~~~i~~lc~~~~Ip~~~v~sk~~LG 80 (126)
T 2xzm_U 29 LHEVLRTIEAKQALFVCVAEDCDQ-GNYVKLVKALCAKNEIKYVSVPKRASLG 80 (126)
T ss_dssp HHHHHHHHHHTCCSEEEEESSCCS-TTHHHHHHHHHHHTTCCEEEESCSHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCCCh-HHHHHHHHHHHHHhCCCEEEECCHHHHH
Confidence 355666777667788887643222 1225688899999999875 44333344
No 278
>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
Probab=27.72 E-value=91 Score=28.08 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEE
Q 018318 167 YIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC 214 (358)
Q Consensus 167 ~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvv 214 (358)
..+++++++.++.....+|.+.....|......+++++|+++|+.+++
T Consensus 248 ~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~ 295 (375)
T 1r0m_A 248 VASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWC 295 (375)
T ss_dssp CCSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCHHHHHHHHHhCCCCEEEECcchhcCHHHHHHHHHHHHHcCCcEEe
Confidence 457788888887655778877777667666788999999999998544
No 279
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Probab=27.49 E-value=68 Score=28.90 Aligned_cols=50 Identities=12% Similarity=-0.036 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEe
Q 018318 166 GYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCD 215 (358)
Q Consensus 166 ~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD 215 (358)
...+++++++.++.....+|.+.....|......+++++|+++|+.+++=
T Consensus 250 ~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~gi~~~~h 299 (371)
T 2ovl_A 250 NLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKVAALAEANNMLLTSH 299 (371)
T ss_dssp TCCSHHHHHHHHHHTCCSEECCCTTTTTSHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCCHHHHHHHHHcCCCCEEeeCccccCCHHHHHHHHHHHHHcCCeEccc
Confidence 35678999999987567777777666676777889999999999988774
No 280
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=27.33 E-value=98 Score=25.79 Aligned_cols=35 Identities=9% Similarity=-0.033 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEec
Q 018318 181 RPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDM 216 (358)
Q Consensus 181 ~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~ 216 (358)
+..+|.++-..|-...-++.+.+++ +.|+.|++=+
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la-~~gi~Vi~~G 135 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLS-ADGHRVIVAG 135 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHH-HTTCEEEEEE
T ss_pred CCCEEEEechhcCCHHHHHHHHHHH-HCCCEEEEee
Confidence 5678888877665443467777777 6899998843
No 281
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=27.07 E-value=97 Score=27.91 Aligned_cols=51 Identities=6% Similarity=-0.237 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEec
Q 018318 166 GYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDM 216 (358)
Q Consensus 166 ~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~ 216 (358)
...++++++++++.....+|.+.....|...+..+++++|+++|+.+++-.
T Consensus 243 ~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~ 293 (368)
T 3q45_A 243 SCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQVGG 293 (368)
T ss_dssp TCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECC
T ss_pred CcCCHHHHHHHHHcCCCCeEEechhhcCCHHHHHHHHHHHHHcCCcEEecC
Confidence 356889999998765678888887777777788999999999999888743
No 282
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=26.98 E-value=1.1e+02 Score=23.29 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEechhhhhhhh
Q 018318 171 DKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVA 224 (358)
Q Consensus 171 ~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~~ 224 (358)
+.++++++ ..++.+++..+ .. -+++.++|+++|+.++=+.| .|+..
T Consensus 85 ~v~~~~~~-~g~~~i~i~~~---~~--~~~l~~~a~~~Gi~~igpnc--~g~~~ 130 (145)
T 2duw_A 85 GVAQEAIA-IGAKTLWLQLG---VI--NEQAAVLAREAGLSVVMDRC--PAIEL 130 (145)
T ss_dssp HHHHHHHH-HTCCEEECCTT---CC--CHHHHHHHHTTTCEEECSCC--HHHHS
T ss_pred HHHHHHHH-cCCCEEEEcCC---hH--HHHHHHHHHHcCCEEEcCCe--eeEEc
Confidence 44555554 36777766532 22 57999999999999998886 46554
No 283
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=25.98 E-value=79 Score=27.43 Aligned_cols=55 Identities=22% Similarity=0.414 Sum_probs=36.2
Q ss_pred CCC-CCHHHHHHHHhh---c-CCcEEEE-cCCCCCCc---cchHHHHHHHHHh-CCEEEEechhh
Q 018318 165 TGY-IDYDKLEEKALD---F-RPKLIIC-GGSAYPRD---WDYARFRAVADKC-GALLLCDMAHI 219 (358)
Q Consensus 165 ~~~-id~~~l~~~l~~---~-~~~~v~~-~~~~~~~~---~~l~~i~~la~~~-g~~lvvD~a~~ 219 (358)
+|. .+++++..+.+. . +++++++ +.+.++.. .++..|..+.+.+ +..+++|..|+
T Consensus 136 ~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~~~~~~~~~dl~~i~~lk~~~~~~pV~~D~sH~ 200 (280)
T 2qkf_A 136 KPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVIFDVTHS 200 (280)
T ss_dssp CCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEECSTTCEECCTTHHHHHHHHTTTCCEEEEHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCccccCHHHHHHHHHhCCCCCEEEECCCC
Confidence 344 366666665533 2 2455544 44444532 5888888888887 89999999998
No 284
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A
Probab=25.95 E-value=1.2e+02 Score=27.29 Aligned_cols=49 Identities=12% Similarity=-0.063 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEe
Q 018318 167 YIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCD 215 (358)
Q Consensus 167 ~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD 215 (358)
..+++++++.++.....+|.+.....|......+++++|+++|+.+++=
T Consensus 248 ~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~g~~~~~~ 296 (370)
T 1chr_A 248 LSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGG 296 (370)
T ss_dssp CCSHHHHHHHHTTTSCSEEEECTTTSCSHHHHHHHHHHHHHHTCEEEEC
T ss_pred cCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEec
Confidence 5678888888876557788888777777778889999999999998764
No 285
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=25.70 E-value=81 Score=27.58 Aligned_cols=52 Identities=19% Similarity=0.420 Sum_probs=34.7
Q ss_pred CCHHHHHHHHhh---c-CCcEEEE-cCCCCCCc---cchHHHHHHHHHh-CCEEEEechhh
Q 018318 168 IDYDKLEEKALD---F-RPKLIIC-GGSAYPRD---WDYARFRAVADKC-GALLLCDMAHI 219 (358)
Q Consensus 168 id~~~l~~~l~~---~-~~~~v~~-~~~~~~~~---~~l~~i~~la~~~-g~~lvvD~a~~ 219 (358)
.++++++.+++. . +++++++ +.+.++.. .++..|..+.+.+ +..|++|..|+
T Consensus 143 ~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~~~y~~~~~dl~~i~~lk~~~~~~pV~~D~sH~ 203 (292)
T 1o60_A 143 LSPSQMGNIVEKIEECGNDKIILCDRGTNFGYDNLIVDMLGFSVMKKASKGSPVIFDVTHS 203 (292)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEECCEECSTTCEECCTTHHHHHHHHTTSCCEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCccccCHHHHHHHHhhCCCCCEEEECCCc
Confidence 366666665533 1 2455544 44444432 5888998887777 89999999998
No 286
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=25.45 E-value=1.3e+02 Score=21.49 Aligned_cols=51 Identities=16% Similarity=0.083 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEE--echhhhhh
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC--DMAHISGL 222 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvv--D~a~~~g~ 222 (358)
.+.+.+.+++.+.++|++... .+ ..-...|..+|+++++.++. +...-+|.
T Consensus 27 ~~~v~kai~~gkaklVilA~D-~~-~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~ 79 (105)
T 3u5e_c 27 YKSTVKSLRQGKSKLIIIAAN-TP-VLRKSELEYYAMLSKTKVYYFQGGNNELGT 79 (105)
T ss_dssp HHHHHHHHHTTCCSEEEECTT-SC-HHHHHHHHHHHHHHTCEEEECSSCHHHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCC-CC-HHHHHHHHHHHHHcCCCEEEeCCCHHHHHH
Confidence 466777887767788877532 22 22357888999999999983 44334453
No 287
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=25.45 E-value=69 Score=28.13 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=35.4
Q ss_pred CCC-CCHHHHHHHHhh---c-CCcEEEE-cCCCCCCc---cchHHHHHHHHHhCCEEEEechhhh
Q 018318 165 TGY-IDYDKLEEKALD---F-RPKLIIC-GGSAYPRD---WDYARFRAVADKCGALLLCDMAHIS 220 (358)
Q Consensus 165 ~~~-id~~~l~~~l~~---~-~~~~v~~-~~~~~~~~---~~l~~i~~la~~~g~~lvvD~a~~~ 220 (358)
+|. .++++++.+++. . +.+++++ +.+.++.. .|+..|..+.+ ++++|++|..|+.
T Consensus 162 ~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~~y~~~~~~vdl~~i~~lk~-~~~PV~~D~sHsv 225 (298)
T 3fs2_A 162 KGQFLAPWDMKNVLAKITESGNPNVLATERGVSFGYNTLVSDMRALPIMAG-LGAPVIFDATHSV 225 (298)
T ss_dssp CCTTCCGGGHHHHHHHHHTTTCCCEEEEECCEECSSSCEECCTTHHHHHHT-TTSCEEEEHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccCHHHHHHHHH-cCCcEEEcCCCcc
Confidence 444 566666555432 1 3455554 34445532 47888888766 9999999999973
No 288
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=25.24 E-value=1.1e+02 Score=22.80 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEechhhhhhh
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLV 223 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~ 223 (358)
++.+++..+. .++.|++.. |.. =+++.++|+++|+.++ ..| .|+.
T Consensus 72 ~~~v~e~~~~-g~k~v~~~~---G~~--~~e~~~~a~~~Girvv-~nC--~gv~ 116 (122)
T 3ff4_A 72 LSEYNYILSL-KPKRVIFNP---GTE--NEELEEILSENGIEPV-IGC--TLVM 116 (122)
T ss_dssp GGGHHHHHHH-CCSEEEECT---TCC--CHHHHHHHHHTTCEEE-ESC--HHHH
T ss_pred HHHHHHHHhc-CCCEEEECC---CCC--hHHHHHHHHHcCCeEE-CCc--CeEE
Confidence 3446666654 677777642 222 2699999999999988 444 4543
No 289
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=25.08 E-value=1e+02 Score=22.08 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEE--echhhhhh
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC--DMAHISGL 222 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvv--D~a~~~g~ 222 (358)
.+.+.+++++.+.++|++.....+ .-...|..+|++++++++. +...-+|.
T Consensus 27 ~~~v~kai~~gkaklViiA~D~~~--~~~~~i~~~c~~~~ip~~~~~~s~~eLG~ 79 (104)
T 4a18_G 27 YKSTIKAIRNGTAKLVFISNNCPT--VRKSEIEYYASLAQISIHHFVGSNVELGT 79 (104)
T ss_dssp HHHHHHHHHHTCCCEEEECTTSCH--HHHHHHHHHHHHHTCEEEECSSCHHHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCCCH--HHHHHHHHHHHHcCCcEEEecCCHHHHHH
Confidence 466777887767788877532211 2357888899999999883 44434553
No 290
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=25.08 E-value=43 Score=32.20 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=23.3
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..++++|.+-||++|+.||+|-.
T Consensus 74 p~~Gt~~df~~Lv~~aH~~Gi~VilD~V 101 (557)
T 1zja_A 74 KEYGTMEDFDRLMAELKKRGMRLMVDVV 101 (557)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 4456666788999999999999999986
No 291
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=24.61 E-value=41 Score=31.64 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=24.1
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.||+|..
T Consensus 92 ~~~Gt~~df~~lv~~~H~~Gi~VilD~V 119 (484)
T 2aaa_A 92 SNFGTADNLKSLSDALHARGMYLMVDVV 119 (484)
T ss_dssp TTTCCHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 6677777899999999999999999986
No 292
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=24.42 E-value=1e+02 Score=21.84 Aligned_cols=43 Identities=7% Similarity=-0.019 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEE
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC 214 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvv 214 (358)
.+.+.+++++.+.++|++.....+ .-...|..+|++++++++.
T Consensus 23 ~~~v~kai~~gka~lViiA~D~~~--~~~~~i~~~c~~~~ip~~~ 65 (101)
T 3on1_A 23 EEQVVKAVQNGQVTLVILSSDAGI--HTKKKLLDKCGSYQIPVKV 65 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCH--HHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCH--HHHHHHHHHHHHcCCCEEE
Confidence 567778887767888876533222 2356888899999987654
No 293
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A*
Probab=24.40 E-value=1e+02 Score=28.34 Aligned_cols=49 Identities=6% Similarity=-0.113 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEE
Q 018318 166 GYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC 214 (358)
Q Consensus 166 ~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvv 214 (358)
...+++++++.++.....+|.+..+..|...+..+++++|+++|+.+++
T Consensus 309 ~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~i~~~A~~~gi~~~~ 357 (413)
T 1kko_A 309 WCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQ 357 (413)
T ss_dssp TCCSHHHHHHHHHTTCCSEEEECGGGGSSTHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEe
Confidence 3456777777776544566666655555555667788888888877665
No 294
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*
Probab=24.21 E-value=1.3e+02 Score=26.70 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 181 RPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 181 ~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
..++|+++.-..+....+.++.+.|+++|+.+++|..
T Consensus 186 ~~~~v~~~g~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 222 (352)
T 4e84_A 186 QHDVVLMSDYAKGGLTHVTTMIEKARAAGKAVLVDPK 222 (352)
T ss_dssp GCSEEEEECCSSSSCSSHHHHHHHHHHTTCEEEEECC
T ss_pred cCCEEEEeCCCCCCHHHHHHHHHHHHhcCCEEEEECC
Confidence 3577776532222233588999999999999999985
No 295
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=24.07 E-value=35 Score=31.58 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=15.9
Q ss_pred CCCCccchHHHHHHHHHhCCEEEEech
Q 018318 191 AYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 191 ~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
.+|+..+++++.+-||++|+.||.|-.
T Consensus 77 ~~Gt~~d~~~lv~~ah~~Gi~vilD~V 103 (424)
T 2dh2_A 77 NFGSKEDFDSLLQSAKKKSIRVILDLT 103 (424)
T ss_dssp GGCCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 344445566666666666666666653
No 296
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=24.04 E-value=34 Score=32.17 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=22.8
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.||+|..
T Consensus 76 p~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 103 (488)
T 1wza_A 76 PDYGTLEDFHKLVEAAHQRGIKVIIDLP 103 (488)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 4456667788898999999999999986
No 297
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A
Probab=24.00 E-value=1.2e+02 Score=27.87 Aligned_cols=48 Identities=6% Similarity=-0.081 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEE
Q 018318 167 YIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC 214 (358)
Q Consensus 167 ~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvv 214 (358)
..+++++++.++.....+|.+..+..|...+..+++++|+++|+.+++
T Consensus 310 ~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~i~~~A~~~gi~~~~ 357 (413)
T 1kcz_A 310 CNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYC 357 (413)
T ss_dssp CCSHHHHHHHHHTTCSSEEEECTGGGSSTHHHHHHHHHHHHTTCEEEE
T ss_pred cCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEe
Confidence 567777877776544666666655555556677888888888887776
No 298
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=23.69 E-value=35 Score=31.94 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=20.5
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.||+|-.
T Consensus 91 p~~Gt~~df~~lv~~~h~~Gi~VilD~V 118 (475)
T 2z1k_A 91 PILGGNEALRHLLEVAHAHGVRVILDGV 118 (475)
T ss_dssp GGGTCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 3445556777888888888888888875
No 299
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=23.59 E-value=43 Score=24.05 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhCCEEEEech
Q 018318 198 YARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 198 l~~i~~la~~~g~~lvvD~a 217 (358)
-++|.++|++||+.++.|..
T Consensus 44 A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 44 AKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCeEEECHH
Confidence 46899999999999999985
No 300
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=23.44 E-value=1.7e+02 Score=26.10 Aligned_cols=17 Identities=0% Similarity=-0.080 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhCCEEEE
Q 018318 198 YARFRAVADKCGALLLC 214 (358)
Q Consensus 198 l~~i~~la~~~g~~lvv 214 (358)
+.+|..+|+++|+.+++
T Consensus 151 LrkL~~~ak~~~i~vi~ 167 (333)
T 3io5_A 151 FRIVTPYFSTKNIPCIA 167 (333)
T ss_dssp HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCEEEE
Confidence 33566678999988655
No 301
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=23.18 E-value=1.2e+02 Score=22.32 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccc-hHHHHHHHHHhCCEEEE
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWD-YARFRAVADKCGALLLC 214 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~-l~~i~~la~~~g~~lvv 214 (358)
...+.+++++.+.++|++.....+ .. ...|..+|++++++++.
T Consensus 34 ~~~v~kai~~gka~lViiA~D~~p--~~~~~~l~~lc~~~~VP~~~ 77 (120)
T 1xbi_A 34 ANEVTKAVERGIAKLVIIAEDVKP--EEVVAHLPYLCEEKGIPYAY 77 (120)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCSS--GGGTTTHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCceEEEEcCCCCh--HHHHHHHHHHHHhcCCCEEE
Confidence 456677777667788877533222 12 46788889999987643
No 302
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=23.05 E-value=1.5e+02 Score=21.74 Aligned_cols=43 Identities=9% Similarity=0.063 Sum_probs=28.4
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccc-hHHHHHHHHHhCCEEEE
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWD-YARFRAVADKCGALLLC 214 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~-l~~i~~la~~~g~~lvv 214 (358)
.+.+.+++++.+.++|++.....+ .. ...|..+|++++++++.
T Consensus 32 ~~~v~kal~~gka~lViiA~D~~~--~~~~~~l~~lc~~~~Vp~~~ 75 (119)
T 1rlg_A 32 TNETTKAVERGLAKLVYIAEDVDP--PEIVAHLPLLCEEKNVPYIY 75 (119)
T ss_dssp HHHHHHHHTTTCCSEEEEESCCSC--STTTTHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCh--HHHHHHHHHHHHHcCCCEEE
Confidence 456777777666788876533222 12 46788889999987653
No 303
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=23.04 E-value=1.1e+02 Score=28.21 Aligned_cols=47 Identities=11% Similarity=-0.095 Sum_probs=25.4
Q ss_pred CCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEE
Q 018318 168 IDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC 214 (358)
Q Consensus 168 id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvv 214 (358)
.++.++++.++.....+|.+.....|...+..+++++|+++|+.+++
T Consensus 321 ~~~~~~~~~i~~~a~d~i~ik~~~~GGite~~~i~~~A~~~g~~~~~ 367 (431)
T 2fym_A 321 TNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVI 367 (431)
T ss_dssp TCHHHHHHHHHTTCCSEEEECGGGTCSHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHCCCeEEE
Confidence 44555555554433444544444444444555666666666666654
No 304
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=23.01 E-value=45 Score=23.71 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhCCEEEEech
Q 018318 198 YARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 198 l~~i~~la~~~g~~lvvD~a 217 (358)
-++|.++|+++|++++.|-.
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEECHH
Confidence 46999999999999999984
No 305
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=23.00 E-value=1e+02 Score=21.99 Aligned_cols=43 Identities=12% Similarity=0.008 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEE
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC 214 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvv 214 (358)
.+.+.+++++.+.++|++.....+ .-...|..+|+.++++++.
T Consensus 24 ~~~v~kai~~gka~lViiA~D~~~--~~~~~i~~~c~~~~vp~~~ 66 (101)
T 3v7q_A 24 EDLVIKEIRNARAKLVLLTEDASS--NTAKKVTDKCNYYKVPYKK 66 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCH--HHHHHHHHHHHHTTCCEEE
T ss_pred hhhhHHHHhcCceeEEEEeccccc--cchhhhcccccccCCCeee
Confidence 567788887767888876532111 2356788889999987654
No 306
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=22.81 E-value=49 Score=32.75 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=25.3
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..++++|.+-||++|+.||+|..
T Consensus 110 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V 137 (686)
T 1d3c_A 110 PAYGTIADFQNLIAAAHAKNIKVIIDFA 137 (686)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 6677778899999999999999999986
No 307
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=22.75 E-value=45 Score=23.96 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhCCEEEEech
Q 018318 198 YARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 198 l~~i~~la~~~g~~lvvD~a 217 (358)
-++|.++|+++|+.++.|-.
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVIVDIK 48 (98)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCCeecCHH
Confidence 46999999999999999984
No 308
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=22.73 E-value=2.1e+02 Score=20.25 Aligned_cols=52 Identities=12% Similarity=-0.081 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEcCCC--CCCc----cchHHHHHHHHHhCCE-EEEech
Q 018318 166 GYIDYDKLEEKALDFRPKLIICGGSA--YPRD----WDYARFRAVADKCGAL-LLCDMA 217 (358)
Q Consensus 166 ~~id~~~l~~~l~~~~~~~v~~~~~~--~~~~----~~l~~i~~la~~~g~~-lvvD~a 217 (358)
...+++.+++++++.++..++++.|- ++.. ..++++++..++.++. .++||-
T Consensus 36 ~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DER 94 (98)
T 1iv0_A 36 LEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDER 94 (98)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCS
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 45678999999998888888888663 3332 2355555544433544 567774
No 309
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=22.65 E-value=51 Score=32.07 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=21.9
Q ss_pred CCCccchHHHHHHHHHhCCEEEEech
Q 018318 192 YPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 192 ~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+|+..+++++.+-||++|+.|++|.+
T Consensus 195 ~Gt~~df~~Lv~~aH~~Gi~VilD~V 220 (601)
T 3edf_A 195 YGSNEDFVRLSTEARKRGMGLIQDVV 220 (601)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEEC
Confidence 34455688999999999999999996
No 310
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=22.64 E-value=50 Score=32.67 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=25.3
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..++++|.+-||++|+.||+|..
T Consensus 106 p~~Gt~~df~~Lv~~aH~~GIkVilD~V 133 (680)
T 1cyg_A 106 PFFGTLSDFQRLVDAAHAKGIKVIIDFA 133 (680)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 6677778899999999999999999986
No 311
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=22.57 E-value=1.2e+02 Score=23.07 Aligned_cols=43 Identities=7% Similarity=0.085 Sum_probs=28.4
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccch-HHHHHHHHHhCCEEEE
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWDY-ARFRAVADKCGALLLC 214 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~l-~~i~~la~~~g~~lvv 214 (358)
.+.+.+++++.+.++|++.....+ ..+ ..|..+|++++++++.
T Consensus 46 ~~~v~kal~~gkaklViiA~D~~~--~~~~~~l~~lc~~~~IP~~~ 89 (135)
T 2aif_A 46 ANEATKALNRGIAEIVLLAADAEP--LEILLHLPLVCEDKNTPYVF 89 (135)
T ss_dssp HHHHHHHHHTTCEEEEEEETTCSC--HHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHcCCCeEEEEecCCCh--HHHHhHHHHHHHhcCCcEEE
Confidence 466777777656777776532121 223 7889999999987653
No 312
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=22.53 E-value=51 Score=31.92 Aligned_cols=26 Identities=8% Similarity=0.082 Sum_probs=21.7
Q ss_pred CCCccchHHHHHHHHHhCCEEEEech
Q 018318 192 YPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 192 ~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+|+..+++++.+-||++|+-||+|..
T Consensus 219 ~Gt~~df~~lv~~~H~~Gi~VilD~V 244 (588)
T 1j0h_A 219 FGDKETLKTLIDRCHEKGIRVMLDAV 244 (588)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 33455788999999999999999985
No 313
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=22.44 E-value=51 Score=32.67 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=25.3
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..++++|.+-||++|+.||+|..
T Consensus 102 p~~Gt~~df~~Lv~~aH~~GikVilD~V 129 (686)
T 1qho_A 102 EHFGNWTTFDTLVNDAHQNGIKVIVDFV 129 (686)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 6677778999999999999999999986
No 314
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=22.36 E-value=39 Score=31.35 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=22.3
Q ss_pred CCCccchHHHHHHHHHhCCEEEEech
Q 018318 192 YPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 192 ~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+|...+++++.+-||++|+.|++|..
T Consensus 80 ~Gt~~~~~~lv~~~h~~Gi~vi~D~V 105 (449)
T 3dhu_A 80 YGTLADFKALTDRAHELGMKVMLDIV 105 (449)
T ss_dssp GCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 45566889999999999999999986
No 315
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=22.08 E-value=1.2e+02 Score=27.47 Aligned_cols=49 Identities=8% Similarity=-0.096 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEe
Q 018318 167 YIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCD 215 (358)
Q Consensus 167 ~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD 215 (358)
..++++++++++.....+|.+.....|......+++++|+++|+.+++=
T Consensus 261 ~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~~ 309 (393)
T 1wuf_A 261 IRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCG 309 (393)
T ss_dssp CCSHHHHHHHHHHTCCSEEEECTGGGTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred cCCHHHHHHHHHhCCCCEEEeChhhhCCHHHHHHHHHHHHHcCCeEEec
Confidence 4567788888866446777777665666667789999999999988764
No 316
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=22.08 E-value=1.5e+02 Score=22.37 Aligned_cols=43 Identities=14% Similarity=0.010 Sum_probs=28.4
Q ss_pred HHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEechhhhhhh
Q 018318 173 LEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLV 223 (358)
Q Consensus 173 l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a~~~g~~ 223 (358)
++++++ ..++.+++..+. .-+++.+.|+++|+.++-+.| .|+.
T Consensus 86 ~~~~~~-~g~~~i~~~~~~-----~~~~l~~~a~~~Gi~~igpnc--~g~~ 128 (138)
T 1y81_A 86 AKEAVE-AGFKKLWFQPGA-----ESEEIRRFLEKAGVEYSFGRC--IMVE 128 (138)
T ss_dssp HHHHHH-TTCCEEEECTTS-----CCHHHHHHHHHHTCEEECSCC--HHHH
T ss_pred HHHHHH-cCCCEEEEcCcc-----HHHHHHHHHHHCCCEEEcCCc--ceEE
Confidence 444444 356766665432 147999999999999877675 5654
No 317
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=22.02 E-value=96 Score=23.02 Aligned_cols=44 Identities=9% Similarity=-0.090 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEE
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC 214 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvv 214 (358)
++++.+.+++++...|++..+... ...++++.+.|+++|+-+.+
T Consensus 54 ~~~l~~~~~~~~id~viia~~~~~-~~~~~~i~~~l~~~gv~v~~ 97 (141)
T 3nkl_A 54 PKYLERLIKKHCISTVLLAVPSAS-QVQKKVIIESLAKLHVEVLT 97 (141)
T ss_dssp GGGHHHHHHHHTCCEEEECCTTSC-HHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCC-HHHHHHHHHHHHHcCCeEEE
Confidence 456777777667777777655332 23578899999999877654
No 318
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=21.91 E-value=1.4e+02 Score=27.37 Aligned_cols=51 Identities=8% Similarity=-0.072 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEec
Q 018318 166 GYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDM 216 (358)
Q Consensus 166 ~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~ 216 (358)
...++++++++++.....+|.+.....|...+..+|+++|+++|+.+..=.
T Consensus 273 ~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~ 323 (410)
T 3dip_A 273 NLAGTRRFHEMLCADAIDFVMLDLTWCGGLSEGRKIAALAETHARPLAPHX 323 (410)
T ss_dssp TCCSHHHHHHHHHTTCCSEEEECTTTSSCHHHHHHHHHHHHHTTCCEEECS
T ss_pred CcCCHHHHHHHHHcCCCCeEeecccccCCHHHHHHHHHHHHHcCCEEeeeC
Confidence 356788999998765678888887777777788899999999999987643
No 319
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*
Probab=21.52 E-value=55 Score=31.73 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=23.4
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.||+|..
T Consensus 82 ~~~Gt~~df~~lv~~~h~~Gi~VilD~V 109 (589)
T 3aj7_A 82 PTYGTNEDCFALIEKTHKLGMKFITDLV 109 (589)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 4455566789999999999999999986
No 320
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=21.51 E-value=90 Score=28.37 Aligned_cols=51 Identities=10% Similarity=-0.078 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEec
Q 018318 166 GYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDM 216 (358)
Q Consensus 166 ~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~ 216 (358)
...+++++++.+++....+|.+.....|......+++++|+++|+.+++=.
T Consensus 253 ~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~ 303 (391)
T 2qgy_A 253 KQSGLVHFRELISRNAADIFNPDISGMGGLIDIIEISNEASNNGIFISPHC 303 (391)
T ss_dssp TCCSHHHHHHHHHTTCCSEECCBTTTSSCHHHHHHHHHHHHHTTCEECCBC
T ss_pred CcCCHHHHHHHHHcCCCCEEEECcchhCCHHHHHHHHHHHHHCCCEEeccC
Confidence 356789999999765577777776666766778899999999999887654
No 321
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=21.44 E-value=55 Score=32.41 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=25.3
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..++++|.+-||++|+.||+|..
T Consensus 111 p~~Gt~~dfk~Lv~~aH~~GikVilD~V 138 (683)
T 3bmv_A 111 PYFGSFTDFQNLINTAHAHNIKVIIDFA 138 (683)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 6677778899999999999999999986
No 322
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=21.21 E-value=69 Score=27.99 Aligned_cols=55 Identities=15% Similarity=0.297 Sum_probs=35.2
Q ss_pred CCC-CCHHHHHHHHhh----cC------CcEEEE-cCCCCCCc---cchHHHHHHHHHhCCEEEEechhhh
Q 018318 165 TGY-IDYDKLEEKALD----FR------PKLIIC-GGSAYPRD---WDYARFRAVADKCGALLLCDMAHIS 220 (358)
Q Consensus 165 ~~~-id~~~l~~~l~~----~~------~~~v~~-~~~~~~~~---~~l~~i~~la~~~g~~lvvD~a~~~ 220 (358)
++. .++++++.+++. -+ .+++++ +.+.++.. .|+..|..+.+ .+++|++|..|+.
T Consensus 138 ~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~~y~~~~~~vdl~~i~~lk~-~~~pV~~D~sHs~ 207 (288)
T 3tml_A 138 KGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVSFGYNNLVSDMRSLAIMRE-TNAPVVFDATHSV 207 (288)
T ss_dssp CCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCEECSSSCEECCHHHHHHGGG-GSSCEEEEHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCCCCCCCcCcCCHHHHHHHHh-cCCcEEEcCCccc
Confidence 444 466666555432 12 455554 34555533 38899888765 9999999999973
No 323
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=21.11 E-value=1.9e+02 Score=21.83 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 171 DKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 171 ~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.++++++. ..+.+++... . .-+++.++|+++|+.++-+.|
T Consensus 92 ~vv~~~~~~-gi~~i~~~~g-~----~~~~l~~~a~~~Gi~vvGpnc 132 (144)
T 2d59_A 92 EYVEQAIKK-GAKVVWFQYN-T----YNREASKKADEAGLIIVANRC 132 (144)
T ss_dssp HHHHHHHHH-TCSEEEECTT-C----CCHHHHHHHHHTTCEEEESCC
T ss_pred HHHHHHHHc-CCCEEEECCC-c----hHHHHHHHHHHcCCEEEcCCc
Confidence 345555543 6676665422 1 247999999999999988886
No 324
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=21.07 E-value=34 Score=32.11 Aligned_cols=28 Identities=7% Similarity=0.186 Sum_probs=23.9
Q ss_pred CCCCCccchHHHHHHHHHhCCEEEEech
Q 018318 190 SAYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 190 ~~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+.+|+..+++++.+-||++|+.||+|..
T Consensus 69 p~~Gt~~d~~~lv~~~h~~Gi~VilD~V 96 (471)
T 1jae_A 69 TRSGDESAFTDMTRRCNDAGVRIYVDAV 96 (471)
T ss_dssp ETTEEHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 3456667899999999999999999986
No 325
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
Probab=20.92 E-value=68 Score=28.89 Aligned_cols=50 Identities=12% Similarity=-0.193 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEEe
Q 018318 166 GYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCD 215 (358)
Q Consensus 166 ~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvvD 215 (358)
...+++++++.++.....+|.+.....|......+++++|+++|+.+++=
T Consensus 247 ~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~ 296 (371)
T 2ps2_A 247 LATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGYSVSVQ 296 (371)
T ss_dssp TCCSHHHHHHHHHHTCCSEEEEEHHHHTSHHHHHHHHHHHHHHTCEEEEE
T ss_pred CcCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeEEec
Confidence 34678889988877557777776555555667789999999999988764
No 326
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=20.91 E-value=52 Score=31.83 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=21.6
Q ss_pred CCCccchHHHHHHHHHhCCEEEEech
Q 018318 192 YPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 192 ~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
+|+..+++++.+-||++|+-||+|..
T Consensus 216 ~Gt~~dfk~lv~~~H~~Gi~VilD~V 241 (585)
T 1wzl_A 216 FGDLPTFRRLVDEAHRRGIKIILDAV 241 (585)
T ss_dssp TCCHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 33455688999999999999999985
No 327
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=20.76 E-value=43 Score=32.29 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=22.0
Q ss_pred CCCCccchHHHHHHHHHhCCEEEEech
Q 018318 191 AYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 191 ~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
.+|+..+++++.+-||++|+.||+|..
T Consensus 88 ~~Gt~~df~~lv~~aH~~Gi~VilD~V 114 (570)
T 1m53_A 88 EYGTMEDFDSLVAEMKKRNMRLMIDVV 114 (570)
T ss_dssp GGCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEEe
Confidence 344556788999999999999999986
No 328
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=20.68 E-value=1.2e+02 Score=28.21 Aligned_cols=22 Identities=14% Similarity=0.013 Sum_probs=10.8
Q ss_pred hHHHHHHHHhhcC---CCCeEEEec
Q 018318 107 SPANFAAYTAVLE---PHDRIMGLD 128 (358)
Q Consensus 107 t~a~~~~l~a~~~---~gd~Vl~~~ 128 (358)
.+|+..+..++-+ .+|..+..+
T Consensus 224 ~eaL~ll~~Ai~~aGy~~~i~i~lD 248 (441)
T 3qtp_A 224 REALDLLVEAIAKAGYTGKIEIAMD 248 (441)
T ss_dssp HHHHHHHHHHHHHHTCTTTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCceEEEccc
Confidence 3566666655522 245444444
No 329
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=20.30 E-value=1.5e+02 Score=21.95 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCccc-hHHHHHHHHHhCCEEEE
Q 018318 170 YDKLEEKALDFRPKLIICGGSAYPRDWD-YARFRAVADKCGALLLC 214 (358)
Q Consensus 170 ~~~l~~~l~~~~~~~v~~~~~~~~~~~~-l~~i~~la~~~g~~lvv 214 (358)
.+.+.+++++.+.++|++.....+ .. ...|..+|+++++.++.
T Consensus 33 ~~~v~kal~~gka~lViiA~D~~~--~~~~~~l~~lc~~~~Vp~~~ 76 (124)
T 2fc3_A 33 TNETTKAVERGLAKLVVIAEDVDP--PEIVMHLPLLCDEKKIPYVY 76 (124)
T ss_dssp HHHHHHHHHTTCCSEEEEETTCSS--GGGTTTHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHcCCceEEEEcCCCCh--HHHHHHHHHHHHHcCCCEEE
Confidence 456777777666788877533222 12 46777889999987543
No 330
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=20.12 E-value=36 Score=32.02 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=18.3
Q ss_pred CCCCccchHHHHHHHHHhCCEEEEech
Q 018318 191 AYPRDWDYARFRAVADKCGALLLCDMA 217 (358)
Q Consensus 191 ~~~~~~~l~~i~~la~~~g~~lvvD~a 217 (358)
.+|+..+++++.+-||++|+.||+|..
T Consensus 98 ~~Gt~~df~~Lv~~aH~~Gi~VilD~V 124 (488)
T 2wc7_A 98 MLGGNEAFKELLDAAHQRNIKVVLDGV 124 (488)
T ss_dssp GGTHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 344445677777777777777777764
No 331
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=20.10 E-value=1.7e+02 Score=24.60 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHhhcCCcEEEEcCCCCCCccchHHHHHHHHHhCCEEEE
Q 018318 165 TGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC 214 (358)
Q Consensus 165 ~~~id~~~l~~~l~~~~~~~v~~~~~~~~~~~~l~~i~~la~~~g~~lvv 214 (358)
+...+.+.++++++ ..+.+|.++.+..-+...+.++.+.+|+++++++.
T Consensus 21 dk~~~~~~l~~~~~-~GtDaI~vGgs~gvt~~~~~~~v~~ik~~~~Piil 69 (235)
T 3w01_A 21 AKHISDDDLDAICM-SQTDAIMIGGTDDVTEDNVIHLMSKIRRYPLPLVL 69 (235)
T ss_dssp TSCCCHHHHHHHHT-SSCSEEEECCSSCCCHHHHHHHHHHHTTSCSCEEE
T ss_pred CCcCCHHHHHHHHH-cCCCEEEECCcCCcCHHHHHHHHHHhcCcCCCEEE
Confidence 34567788887654 47889988876544555678888888888888766
Done!