RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 018318
(358 letters)
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 394 bits (1014), Expect = e-136
Identities = 221/350 (63%), Positives = 256/350 (73%), Gaps = 1/350 (0%)
Query: 9 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRY 68
L+ D E++D+I+KE RQ G+ELIASENF S AV+EALGS L NKYS G PG RY
Sbjct: 9 AQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRY 68
Query: 69 YGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLD 128
YGG E IDE+E LC+ RALQ + LDP WGVNVQPYSGSPANFA YTA++EPH RIMGLD
Sbjct: 69 YGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLD 128
Query: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG 188
LP GGHLTHG+ T KKISATSI+FES+ YKVN TGYIDYD+LEE A F PKLII G
Sbjct: 129 LPDGGHLTHGFMT-DKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAG 187
Query: 189 GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRG 248
S Y R+ DY R R +AD+ GA L+ DMAHISGLV A +PFE+CH+VTTTTHK+LRG
Sbjct: 188 TSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRG 247
Query: 249 PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAST 308
RAGMIFYR+G + + +Y+ E IN AVFP LQGGPHNH I +AVALKQA T
Sbjct: 248 CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMT 307
Query: 309 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGK 358
P FK Y +QV AN AL L GY +VTGG++NHL+L DLR G G
Sbjct: 308 PEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGG 357
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
(Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 463
Score = 390 bits (1003), Expect = e-135
Identities = 229/351 (65%), Positives = 266/351 (75%), Gaps = 1/351 (0%)
Query: 8 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNR 67
G SL DPE+ +L+++EK RQCRG+ELIASENF S A +EALGS L NKYSEG PG R
Sbjct: 4 GQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKR 63
Query: 68 YYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGL 127
YYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN A YTA+L+PHDRIMGL
Sbjct: 64 YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGL 123
Query: 128 DLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC 187
DLP GGHLTHGY + +ISATSI+FES+PYK+N TG IDY++L A FRP+LII
Sbjct: 124 DLPDGGHLTHGYMSDVK-RISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIA 182
Query: 188 GGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLR 247
G SAY R DYAR R V D+ A LL DMAHISGLVAA+ +PF++ IVTTTTHK+LR
Sbjct: 183 GTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLR 242
Query: 248 GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAS 307
G R+G+IFYRKG K Y FED+INFAVFPSLQGGPHNH I A+AVALKQA
Sbjct: 243 GARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQAC 302
Query: 308 TPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGK 358
TP F+ Y+ QV NA A+ + L +GYSLV+GGT+NHLVL DLRP GL G
Sbjct: 303 TPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGA 353
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 358 bits (920), Expect = e-123
Identities = 170/348 (48%), Positives = 217/348 (62%), Gaps = 25/348 (7%)
Query: 10 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYY 69
L DP++ IE+E++RQ IELIASENF S AV+EA GS LTNKY+EG PG RYY
Sbjct: 2 KYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYY 61
Query: 70 GGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDL 129
GG E++D +E L R RA Q F + QP+SG+ AN A Y VLE D ++G++L
Sbjct: 62 GGCEYVDIVEELARERAKQLFGAEHANV----QPHSGAQANMAVYFTVLEHGDTVLGMNL 117
Query: 130 PSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGG 189
GGHLTH G ++ + + + + Y V+ T IDYD + EKA RPKLI+
Sbjct: 118 SHGGHLTH------GSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAA 171
Query: 190 SAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGP 249
SAYPR D+A+FR +AD+ GA L+ DMAHI+GLVAA NP Y H VTTTTHK+LRGP
Sbjct: 172 SAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGP 231
Query: 250 RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP 309
R GMI + F +I+ A+FP +QGGP H I A AVA +A
Sbjct: 232 RGGMILCQ---------------EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQD 276
Query: 310 AFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTG 357
FKAYAK+V NA L + L +G++LV+GGT+NHL+L DLRP LTG
Sbjct: 277 DFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTG 324
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 355 bits (912), Expect = e-122
Identities = 159/349 (45%), Positives = 213/349 (61%), Gaps = 23/349 (6%)
Query: 9 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRY 68
++ D E+ +E+EK RQ IELIASEN+TS V++A GS LTNKY+EG PG RY
Sbjct: 4 EMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRY 63
Query: 69 YGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLD 128
YGG E++D +E L RA + F D QP+SGS ANFA YTA+LEP D ++G+
Sbjct: 64 YGGCEYVDIVEQLAIDRAKELFGADYANV----QPHSGSQANFAVYTALLEPGDTVLGM- 118
Query: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG 188
+L HG + + G ++ + + +PY ++ +TG+IDY LE++A + +PK+II G
Sbjct: 119 -----NLAHGGHLTHGSPVNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGG 172
Query: 189 GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRG 248
SAY D+A+ R +AD GA L DMAH++GLVAA NP + H+VTTTTHK+L G
Sbjct: 173 FSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAG 232
Query: 249 PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAST 308
PR G+I + G + K K+N AVFP QGGP H I AVALK+A
Sbjct: 233 PRGGLILAKGGSEELYK------------KLNSAVFPGGQGGPLMHVIAGKAVALKEAME 280
Query: 309 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTG 357
P FK Y +QV NA A+ +GY +V+GGT+NHL L DL LTG
Sbjct: 281 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTG 329
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 129 bits (325), Expect = 2e-34
Identities = 36/353 (10%), Positives = 87/353 (24%), Gaps = 55/353 (15%)
Query: 34 IELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD 93
L + + F G+ + + M G+ + G+ + + +
Sbjct: 35 FLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSYYALAESVK---------N 85
Query: 94 PTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT--- 150
+ + + G A +++ ++ GLD ++ ++ +
Sbjct: 86 IFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCT 145
Query: 151 ----SIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC---------GGSAYPRDWD 197
I G D + LE + P + G +
Sbjct: 146 VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLAN 205
Query: 198 YARFRAVADKCGALLLCDMAHISGLVAAQEAANP--------------FEYCHIVTTTTH 243
++A K ++ D A + + ++Y ++ +
Sbjct: 206 LKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAK 265
Query: 244 KSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAL 303
K P G++ + + + +G P + A+
Sbjct: 266 KDAMVPMGGLLCMKDDS------------FFDVYTECRTLCVVQEGFPTYGGLEGGAMER 313
Query: 304 KQASTPAF--KAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLG 354
+ A L + L + +V H D L
Sbjct: 314 LAVGLYDGMNLDWLAYRIAQVQYLVDGL--EEIGVVCQQAGGHAAFVDAGKLL 364
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 114 bits (286), Expect = 4e-29
Identities = 40/328 (12%), Positives = 78/328 (23%), Gaps = 46/328 (14%)
Query: 34 IELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGN-------EFIDEIENLC---- 82
++ S F G K+ G ++G + +L
Sbjct: 7 LKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLIHEG 66
Query: 83 -----RSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTH 137
A + ++ D T S AN +A++ D ++
Sbjct: 67 PAVAAEKHAARVYNADKT----YFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS 122
Query: 138 GYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPK----------LIIC 187
+GG+ + + D K+ E A P+ +I
Sbjct: 123 ALAMAGGRPV-YLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQ 181
Query: 188 GGSAYPRDWDYARFRAVADKCGALLLCDMAHISG----------LVAAQEAANPFEYCHI 237
G+ ++ + D A + + P + I
Sbjct: 182 LGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGII 241
Query: 238 VTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIG 297
V + HK G ++K + Y N + + P
Sbjct: 242 VVQSVHKQQAGFSQTSQIHKKDSHIKGQ-----LRYCDHKHFNNSFNLFMSTSPFYPMYA 296
Query: 298 ALAVALKQASTPAFKAYAKQVKANAVAL 325
AL V A + + +
Sbjct: 297 ALDVNAAMQEGEAGRKLWHDLLITTIEA 324
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 107 bits (267), Expect = 2e-26
Identities = 41/330 (12%), Positives = 89/330 (26%), Gaps = 50/330 (15%)
Query: 52 GSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111
+ ++++ + G+ Y G+ ++++ + + + + + G A
Sbjct: 54 NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAK---------ELFNYDYIIPAHQGRGAEN 104
Query: 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYT-----SGGKKISATSIYFESLPYKVNSSTG 166
+ +L+ + P H T G K + G
Sbjct: 105 ILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKG 164
Query: 167 YIDYDKLEEKALDFRPKLIIC---------GGSAYPRDWDYARFRAVADKCGALLLCDMA 217
D KL+E I+ G + +A + G ++ D A
Sbjct: 165 DFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSA 224
Query: 218 HISGLVA--------------AQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPP 263
+ + ++Y +T + K G++ R +
Sbjct: 225 RFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIF 284
Query: 264 KKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAV 323
+ GG + A+ L++ + + Y
Sbjct: 285 TLARQRCVPM---------EGFVTYGGLAGRDMAAMVQGLEEGT---EEEYLHYRIGQVK 332
Query: 324 ALGNYLTGKGYSLVTGGTENHLVLWDLRPL 353
LG+ L G + T H V D + L
Sbjct: 333 YLGDRLREAGIPIQY-PTGGHAVFVDCKKL 361
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 101 bits (252), Expect = 2e-24
Identities = 47/324 (14%), Positives = 77/324 (23%), Gaps = 61/324 (18%)
Query: 59 YSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVN--VQPYSGSPANFAAYTA 116
++ M G+ Y G+E +E + +G V + G A
Sbjct: 61 WAGMMIGDEAYAGSENFYHLEKTVKEL-----------FGFKHIVPTHQGRGAENLLSQL 109
Query: 117 VLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEK 176
++P + G T + G G ID +KL
Sbjct: 110 AIKPGQYVAG---NMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATL 166
Query: 177 ALDFRPKLIIC---------GGSAYPRDWDYARFRAVADKCGALLLCDMAHIS------- 220
+ + I G + +A G + D
Sbjct: 167 IKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIK 226
Query: 221 -------GLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVY 273
+ F Y T + K G +
Sbjct: 227 EQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDE-------------- 272
Query: 274 DFEDKINFAV----FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL 329
+ V GG + A+A+ L++A Y + LG+ L
Sbjct: 273 EMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQY---EYIEHRVKQVRYLGDKL 329
Query: 330 TGKGYSLVTGGTENHLVLWDLRPL 353
G +V T H V D R
Sbjct: 330 REAGVPIVE-PTGGHAVFLDARRF 352
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 46.1 bits (108), Expect = 3e-06
Identities = 31/279 (11%), Positives = 71/279 (25%), Gaps = 38/279 (13%)
Query: 98 GVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESL 157
P S + +A + + + + + +H + E++
Sbjct: 131 HAIATPISTGMSISLCLSAARKKYGSNVVI----YPYASHKSPIKAVSFVGMNMRLVETV 186
Query: 158 PYKVNSSTGYIDYDKLEEK-----ALDFRPKLII-CGGSAYPRDWDYARFRAVADKCGAL 211
+ Y+ + +E L RP ++ D + +
Sbjct: 187 L---DGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIP 243
Query: 212 LLCDMAHISGLVAAQEAANPF--EYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPE 269
+ + A+ E V +++ K+L P G + Y
Sbjct: 244 HIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDA--------- 294
Query: 270 GAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL 329
+F +I+ + P + + +L + K K L +
Sbjct: 295 ----EFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLS 350
Query: 330 TGKGYSLVTGGTENHLVLW----------DLRPLGLTGK 358
G + + + L L +TG
Sbjct: 351 KKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGP 389
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 39.8 bits (91), Expect = 3e-04
Identities = 40/324 (12%), Positives = 76/324 (23%), Gaps = 37/324 (11%)
Query: 38 ASENFT--SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPT 95
S+ T + + +A+ A G+ YG + I+E+E R
Sbjct: 5 RSDTVTKPTEEMRKAMAQAEV--------GDDVYGEDPTINELE-----RLAAETFGKEA 51
Query: 96 QWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL-THGYYTSGGKKISATSIYF 154
V SG+ N + A + D ++ G
Sbjct: 52 ALFVP----SGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKN 107
Query: 155 ESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC 214
++ +L G + +A + G +
Sbjct: 108 GAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHI 167
Query: 215 DMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYD 274
D A I A + P G+V
Sbjct: 168 DGARIFNASIASGVPVKEYAGY-----------------ADSVMFCLSKGLCAPVGSVVV 210
Query: 275 FEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGY 334
+ + + + + A + K+ NA L L GY
Sbjct: 211 GDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGY 270
Query: 335 SLVTGGTENHLVLWDLRPLGLTGK 358
S+ + ++V+ L +
Sbjct: 271 SVNPEDVKTNMVILRTDNLKVNAH 294
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 37.5 bits (85), Expect = 0.002
Identities = 43/319 (13%), Positives = 77/319 (24%), Gaps = 32/319 (10%)
Query: 38 ASENFT--SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPT 95
+S+N S V +AL S YG +E +++ + + F D
Sbjct: 8 SSDNIAGASPEVAQAL----VKHSSGQAGP---YGTDELTAQVKR----KFCEIFERDVE 56
Query: 96 QWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYY--TSGGKKISATSIY 153
+G+ AN +A+ P I + G S G K+
Sbjct: 57 ----VFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP 112
Query: 154 FESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLL 213
L + + + V L
Sbjct: 113 AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLH 172
Query: 214 CDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVY 273
D + + + + S + G++
Sbjct: 173 MDGSRFANALVSLG--CSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTS-------- 222
Query: 274 DFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKG 333
+ G + A + + A++ A A L L G G
Sbjct: 223 ---LATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLG 279
Query: 334 YSLVTGGTENHLVLWDLRP 352
V GGTE +++ L
Sbjct: 280 GVEVLGGTEANILFCRLDS 298
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 30.2 bits (66), Expect = 0.42
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 311 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL 353
+ + V + AVA G+ L + TG + +W + +
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 183
Score = 28.5 bits (63), Expect = 0.92
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 306 ASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGG 340
+S +Y AV LGN L + LV GG
Sbjct: 15 SSQGKKSSYQDA----AVDLGNELVSRNIDLVYGG 45
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange
factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId:
9606]}
Length = 228
Score = 27.9 bits (61), Expect = 1.7
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 13 ETVDPEI-HDLIEKEKRRQCRGIELIASE 40
TV ++ L ++E RQ EL +E
Sbjct: 5 HTVGKDVVAGLTQREIDRQEVINELFVTE 33
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 28.0 bits (60), Expect = 1.7
Identities = 31/310 (10%), Positives = 60/310 (19%), Gaps = 30/310 (9%)
Query: 38 ASENFT--SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPT 95
++ +++ + G YG + + +
Sbjct: 5 VNDYSVGMHPKILDLM----ARDNMTQHAG---YGQDSHCAKA----ARLIGELLERPDA 53
Query: 96 QWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFE 155
G+ N A + L P + ++ L G + G K+
Sbjct: 54 DV---HFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDG 110
Query: 156 SLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCD 215
L S + + + G+ Y + + + L L
Sbjct: 111 KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDG 170
Query: 216 MAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDF 275
S L + + + + +
Sbjct: 171 ARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDAL------------ 218
Query: 276 EDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYS 335
K N +G F A L L G
Sbjct: 219 --KPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIR 276
Query: 336 LVTGGTENHL 345
L N L
Sbjct: 277 LAWPSASNQL 286
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 181
Score = 27.0 bits (59), Expect = 2.6
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 306 ASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGG 340
+ + + ++ A+ LGN L + LV GG
Sbjct: 11 SHSGHREVFSDA----AIELGNELVKRKIDLVYGG 41
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 26.7 bits (57), Expect = 5.0
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 321 NAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL 353
+ +++ + K T G + + +WD+R L
Sbjct: 329 SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis
[TaxId: 1423]}
Length = 179
Score = 25.5 bits (55), Expect = 9.1
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 306 ASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGG 340
++ +AY ++ A LG Y+ +G LV GG
Sbjct: 10 SNPGGNEAYKRK----AAELGVYMAEQGIGLVYGG 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.416
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,395,231
Number of extensions: 64914
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 19
Length of query: 358
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,226,816
Effective search space: 333693952
Effective search space used: 333693952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.9 bits)