Query 018319
Match_columns 358
No_of_seqs 163 out of 475
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 13:23:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hyg_A Putative uncharacterize 99.9 7.6E-22 2.6E-26 186.8 10.0 232 56-339 45-297 (301)
2 2kr6_A Presenilin-1; protease, 87.6 0.93 3.2E-05 40.0 6.0 56 258-331 87-156 (176)
3 1qp6_A Protein (alpha2D); de n 10.6 1.2E+02 0.004 19.1 1.5 14 335-348 7-20 (35)
4 2b9s_B DNA topoisomerase I-lik 4.0 3.9E+02 0.013 19.4 1.6 15 269-283 25-39 (62)
5 3arc_E Cytochrome B559 subunit 3.6 4.6E+02 0.016 20.0 1.7 30 162-194 19-49 (83)
6 2h88_D Succinate dehydrogenase 3.6 1.1E+03 0.039 18.1 4.2 45 146-191 7-51 (103)
7 3lw5_I PSI-I, photosystem I re 3.5 3.5E+02 0.012 16.9 0.9 14 266-279 14-27 (30)
8 3arc_J Photosystem II reaction 3.5 5.8E+02 0.02 16.9 2.0 14 175-188 20-33 (40)
9 1jb0_I Photosystem 1 reaction 3.4 6E+02 0.021 16.6 2.0 16 265-280 19-34 (38)
10 3nv9_A Malic enzyme; rossmann 3.3 3.1E+02 0.011 27.7 0.7 12 257-268 99-110 (487)
No 1
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.86 E-value=7.6e-22 Score=186.81 Aligned_cols=232 Identities=18% Similarity=0.257 Sum_probs=138.3
Q ss_pred cceehhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccccCCccchHHHHHHH
Q 018319 56 SQALMIPVMSSCSLVLMFYLFSS-VSQLLTALTAVASVSSLFFCLSPYIAHVRSQFGLADPFVSRCCSKSLTRIQWLLLL 134 (358)
Q Consensus 56 ~~A~~FPv~aS~~Ll~Lyy~f~~-v~~ll~~~~~i~g~~al~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (358)
++.+.+.++.-.+-..+.+.+|+ .+.++..+..+......+..+.+++..+.. .-.....++..
T Consensus 45 sNs~~YI~~ILvfT~~mL~l~k~~~~~ii~~ii~~~i~~~~~YVf~~l~~~~~~---------------~~~~~~~~a~~ 109 (301)
T 4hyg_A 45 ANPLIFIGMLLAFTLVLLVLLRTGGRRFIAAFIGFALFMTFLYIFGALSLLALG---------------PTTAAAAGTLI 109 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------SCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------cchhhHHHHHH
Confidence 34455544433333334444552 333444444444444444555555443211 11123345566
Q ss_pred HHHHHHHHHHhhchhhhhhHHHHHHHHHHHHhc--ccCcHhHHHHHHHHHHHHhhhhhhccccccCcceeeeeeccCCCC
Q 018319 135 ACTSVVVAWLVSGHWILNNLLGIAICIAFVSHV--RLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASN 212 (358)
Q Consensus 135 ~~~~~~~~w~~~~~Wil~Nilgi~~~i~~i~~l--~l~s~k~~~iLL~~lf~YDIFwVF~tp~~fg~sVMvtVAtg~~~~ 212 (358)
.+.++++.++...+|+..|+.|+++|..+.... ++..+ .+.+||++|.+||++|||.| +.|+|+|+|-
T Consensus 110 ~a~~~~~ll~~ypeWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~T------kHMvtLAegv--- 179 (301)
T 4hyg_A 110 GAVAVTALLYLYPEWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRT------KHMITLAEGV--- 179 (301)
T ss_dssp HHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHH------HHHHHHTTTC---
T ss_pred HHHHHHHHHHhcccHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCc------hHHHHHHHhh---
Confidence 677888888889999999999999999876555 55888 89999999999999999866 6999999752
Q ss_pred CcccccccCCCCcccccccCcCCCEEEEecccCCCCCC----C--CCCCCccccccccchhhHHHHHHHHHHhhhccccC
Q 018319 213 PVHTVANSLSLPGLQLITKKLELPVKIVFPRNLFGGVT----P--GGNATDFMMLGLGDMAMPAMLLALVLCFDHRKSSN 286 (358)
Q Consensus 213 ~~~~~~~~~~~p~~~~~~~~~~~PikL~~P~~~~~~~~----~--~~~~~~~SmLGLGDIViPGl~ia~~lrfD~~~~~~ 286 (358)
-..|+|+++++|+....... + ...+++..++|+||+|+|+++++-+.+||.....
T Consensus 180 ------------------mdlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~- 240 (301)
T 4hyg_A 180 ------------------LETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAV- 240 (301)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred ------------------hccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccc-
Confidence 24799999999986432211 0 1224678899999999999999999999964321
Q ss_pred cccccccCCCCCcchhhhhhHHHHHHHHHHHH-hc-----------CCcccHHHHHHHHHHhhHH
Q 018319 287 TVSLFDLHSSKGHKYIWYALPGYAIGLVTALS-AG-----------VPSTLGPVIVMSWVRKDLD 339 (358)
Q Consensus 287 ~~~~~~~~~~~~~~YF~~s~igY~~GL~~T~~-a~-----------VP~~L~~~~~~A~~RgEl~ 339 (358)
..+ -+-+ +..+++||.+|+.+++. ++ .+++++..++-++.+||++
T Consensus 241 ----~g~---~~lP-algA~~Gt~~Gl~vLl~~V~~grpqaGLP~LN~GaI~Gfllg~l~~G~~~ 297 (301)
T 4hyg_A 241 ----LWT---LSAP-TLGAMVGSLVGLAVLLYFVNKGNPQAGLPPLNGGAILGFLVGAALAGSFS 297 (301)
T ss_dssp ----------CCCS-CHHHHHHHHHHHHHHHHHHTSSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred ----ccc---ccch-HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence 000 1124 88999999999999965 32 6788888888899999886
No 2
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=87.59 E-value=0.93 Score=39.98 Aligned_cols=56 Identities=25% Similarity=0.261 Sum_probs=41.6
Q ss_pred cccccccchhhHHHHHHHHH--H-hhhccccCcccccccCCCCCcchhhhhhHHHHHHHHHHHHhc-----------CCc
Q 018319 258 FMMLGLGDMAMPAMLLALVL--C-FDHRKSSNTVSLFDLHSSKGHKYIWYALPGYAIGLVTALSAG-----------VPS 323 (358)
Q Consensus 258 ~SmLGLGDIViPGl~ia~~l--r-fD~~~~~~~~~~~~~~~~~~~~YF~~s~igY~~GL~~T~~a~-----------VP~ 323 (358)
---|||||-|+=+++++-+. + .|. .=..+|++|..+||.+|+... +|.
T Consensus 87 gikLGLGDFIFYSvLVgkAa~~~~~d~------------------~t~~ac~vaIL~GL~~TL~lLa~~~~aLPALPiSI 148 (176)
T 2kr6_A 87 GVKLGLGDFIFYSVLVGKASATASGDW------------------NTTIACFVAILIGLCLTLLLLAIFKKALPALPISI 148 (176)
T ss_dssp CCSSCTTTHHHHHHHHHHHHHHSCCTT------------------TTHHHHHHHHHHHHHHHHHHHHHHTCSCSSSSSCC
T ss_pred cccccccCeeehHHHHHHHHHhhccCH------------------HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcHHH
Confidence 35799999999999999875 3 232 246789999999999999753 555
Q ss_pred ccHHHHHH
Q 018319 324 TLGPVIVM 331 (358)
Q Consensus 324 ~L~~~~~~ 331 (358)
.+|.+...
T Consensus 149 ~lG~~fyf 156 (176)
T 2kr6_A 149 TFGLVFYF 156 (176)
T ss_dssp CCHHHHHH
T ss_pred HHHHHHHH
Confidence 56655443
No 3
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=10.60 E-value=1.2e+02 Score=19.10 Aligned_cols=14 Identities=36% Similarity=0.817 Sum_probs=10.9
Q ss_pred HhhHHHhhcCCCCc
Q 018319 335 RKDLDELWEGTLSN 348 (358)
Q Consensus 335 RgEl~~lW~~~~~~ 348 (358)
.+.+|++|+|+...
T Consensus 7 ekkfkelwkgprrg 20 (35)
T 1qp6_A 7 EKKFKELWKGPRRG 20 (35)
T ss_dssp HHHHHHHHSSSCSH
T ss_pred HHHHHHHhcCCccc
Confidence 46789999998654
No 4
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=4.01 E-value=3.9e+02 Score=19.43 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhcc
Q 018319 269 PAMLLALVLCFDHRK 283 (358)
Q Consensus 269 PGl~ia~~lrfD~~~ 283 (358)
|=|-+|+|.|+|.-.
T Consensus 25 PRItvaWcKr~~VPi 39 (62)
T 2b9s_B 25 PRIICSWAKAQDVPI 39 (62)
T ss_dssp HHHHHHHHHHTTCCG
T ss_pred chhhhhhhhhcCCCH
Confidence 899999999999743
No 5
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=3.64 E-value=4.6e+02 Score=20.00 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=16.1
Q ss_pred HHHHhcccCcHhHHHHHHHH-HHHHhhhhhhccc
Q 018319 162 AFVSHVRLPNIKICAMLLVC-LFVYDIFWVFFSE 194 (358)
Q Consensus 162 ~~i~~l~l~s~k~~~iLL~~-lf~YDIFwVF~tp 194 (358)
..|..+.+|++-++-.|.+. =+.||+ |+||
T Consensus 19 WvIHsITIPslFiaGwLFVstGLaYdv---FGtP 49 (83)
T 3arc_E 19 WVIHSITIPALFIAGWLFVSTGLAYDV---FGTP 49 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHH---HTCC
T ss_pred EEEEeeccchHHHhhhhhhccCcceec---cCCC
Confidence 34455556665554444333 366886 4566
No 6
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=3.57 E-value=1.1e+03 Score=18.12 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=25.7
Q ss_pred hchhhhhhHHHHHHHHHHHHhcccCcHhHHHHHHHHHHHHhhhhhh
Q 018319 146 SGHWILNNLLGIAICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVF 191 (358)
Q Consensus 146 ~~~Wil~Nilgi~~~i~~i~~l~l~s~k~~~iLL~~lf~YDIFwVF 191 (358)
+.||..+-+.++++.-...-.+-.+|- +.-.+|+...+|-.-|=|
T Consensus 7 s~HW~~eR~~avallpL~p~~~~~~~p-v~d~~l~~~l~~H~~~G~ 51 (103)
T 2h88_D 7 SLHWTSERAVSALLLGLLPAAYLYPGP-AVDYSLAAALTLHGHWGL 51 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSH-HHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHHHHhc
Confidence 457888777777766554433334442 444555555555555554
No 7
>3lw5_I PSI-I, photosystem I reaction center subunit VIII; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_I*
Probab=3.54 E-value=3.5e+02 Score=16.87 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHh
Q 018319 266 MAMPAMLLALVLCF 279 (358)
Q Consensus 266 IViPGl~ia~~lrf 279 (358)
+++|++.+++..+|
T Consensus 14 lvfPai~Ma~lf~y 27 (30)
T 3lw5_I 14 LLFPAVAMASLFLH 27 (30)
T ss_dssp CHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999986554
No 8
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=3.51 E-value=5.8e+02 Score=16.87 Aligned_cols=14 Identities=29% Similarity=0.712 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhh
Q 018319 175 CAMLLVCLFVYDIF 188 (358)
Q Consensus 175 ~~iLL~~lf~YDIF 188 (358)
+.+-+.++|+|--+
T Consensus 20 ~vi~~~giFfyGsY 33 (40)
T 3arc_J 20 GVIVIVGLFFYGAY 33 (40)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred hhhheeeEEEeecc
Confidence 45667788887643
No 9
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=3.44 E-value=6e+02 Score=16.63 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=12.8
Q ss_pred chhhHHHHHHHHHHhh
Q 018319 265 DMAMPAMLLALVLCFD 280 (358)
Q Consensus 265 DIViPGl~ia~~lrfD 280 (358)
-+|+|++.+++..+|=
T Consensus 19 glvfPai~Mallf~yI 34 (38)
T 1jb0_I 19 CWLMPTVVMGLLFLYI 34 (38)
T ss_dssp HTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3689999999887763
No 10
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=3.33 E-value=3.1e+02 Score=27.74 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=9.7
Q ss_pred ccccccccchhh
Q 018319 257 DFMMLGLGDMAM 268 (358)
Q Consensus 257 ~~SmLGLGDIVi 268 (358)
+-.+||||||=.
T Consensus 99 G~aILGLGDiG~ 110 (487)
T 3nv9_A 99 STRVLGDGDVTP 110 (487)
T ss_dssp SSSBGGGBCCCG
T ss_pred Cceeeecccccc
Confidence 346999999976
Done!