Query 018319
Match_columns 358
No_of_seqs 163 out of 475
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 13:23:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018319.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018319hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bvyf_ c.23.5.1 (F:) FMN-bind 8.3 40 0.0029 26.0 0.3 29 255-283 83-111 (152)
2 d1vl6a2 c.58.1.3 (A:1-154) Mal 7.9 50 0.0037 26.3 0.7 11 257-267 66-76 (154)
3 d1ja1a2 c.23.5.2 (A:63-239) NA 6.9 37 0.0027 27.2 -0.7 28 255-283 103-130 (177)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 6.7 1E+02 0.0074 17.4 1.4 14 177-190 11-24 (30)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 6.4 1.3E+02 0.0098 17.7 2.0 14 175-188 14-27 (34)
6 d1ykga1 c.23.5.2 (A:63-208) Su 5.1 73 0.0053 24.4 0.2 27 255-282 82-108 (146)
7 d1rlja_ c.23.5.7 (A:) Flavopro 4.7 56 0.0041 25.0 -0.8 85 198-282 6-99 (135)
8 d2axte1 f.23.38.1 (E:3-84) Cyt 3.8 1.8E+02 0.013 20.4 1.5 31 161-194 17-48 (82)
9 d1jb0f_ f.23.16.1 (F:) Subunit 3.4 2.1E+02 0.015 22.2 1.7 14 262-275 59-72 (141)
10 d1tlla2 c.23.5.2 (A:750-951) N 3.3 1.1E+02 0.0079 24.5 -0.3 28 255-283 127-154 (202)
No 1
>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]}
Probab=8.30 E-value=40 Score=26.02 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=23.8
Q ss_pred CCccccccccchhhHHHHHHHHHHhhhcc
Q 018319 255 ATDFMMLGLGDMAMPAMLLALVLCFDHRK 283 (358)
Q Consensus 255 ~~~~SmLGLGDIViPGl~ia~~lrfD~~~ 283 (358)
..+|+++||||---|=-|......+|.+.
T Consensus 83 ~~~~aV~GlGds~Y~~~fc~~~~~ld~~l 111 (152)
T d1bvyf_ 83 GVRYSVFGCGDKNWATTYQKVPAFIDETL 111 (152)
T ss_dssp TCCEEEEEEECTTSGGGTTHHHHHHHHHH
T ss_pred CceeeeeeccccchhhhhhhHHHHHHHHH
Confidence 46899999999998877777788888754
No 2
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}
Probab=7.92 E-value=50 Score=26.34 Aligned_cols=11 Identities=36% Similarity=0.745 Sum_probs=9.2
Q ss_pred ccccccccchh
Q 018319 257 DFMMLGLGDMA 267 (358)
Q Consensus 257 ~~SmLGLGDIV 267 (358)
+.+.||||||=
T Consensus 66 GtaVLGLGniG 76 (154)
T d1vl6a2 66 GSAVLGLGNIG 76 (154)
T ss_dssp STTBTTTBSCC
T ss_pred CceeecCCCcc
Confidence 46799999995
No 3
>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.89 E-value=37 Score=27.21 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.0
Q ss_pred CCccccccccchhhHHHHHHHHHHhhhcc
Q 018319 255 ATDFMMLGLGDMAMPAMLLALVLCFDHRK 283 (358)
Q Consensus 255 ~~~~SmLGLGDIViPGl~ia~~lrfD~~~ 283 (358)
..+|+++||||---| -|.+...++|.+.
T Consensus 103 ~~~yaVfGlGds~Y~-~Fc~a~~~l~~~L 130 (177)
T d1ja1a2 103 GVKFAVFGLGNKTYE-HFNAMGKYVDQRL 130 (177)
T ss_dssp TCEEEEEEEECSSSS-STTHHHHHHHHHH
T ss_pred CceEEEEecCCccHH-HHHHHHHHHHHHH
Confidence 357999999999988 6888888888654
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.67 E-value=1e+02 Score=17.40 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhhh
Q 018319 177 MLLVCLFVYDIFWV 190 (358)
Q Consensus 177 iLL~~lf~YDIFwV 190 (358)
.-+.+||++-||+-
T Consensus 11 ac~i~lfffaiffr 24 (30)
T d2axtt1 11 ACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhc
Confidence 34567888888763
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.43 E-value=1.3e+02 Score=17.65 Aligned_cols=14 Identities=29% Similarity=0.712 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhh
Q 018319 175 CAMLLVCLFVYDIF 188 (358)
Q Consensus 175 ~~iLL~~lf~YDIF 188 (358)
+.+-+.|+|+|-.+
T Consensus 14 ~vi~~vG~FfYGsY 27 (34)
T d2axtj1 14 GVIVIVGLFFYGAY 27 (34)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred hhHhheeeeeeeee
Confidence 56778889998754
No 6
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.12 E-value=73 Score=24.40 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=20.6
Q ss_pred CCccccccccchhhHHHHHHHHHHhhhc
Q 018319 255 ATDFMMLGLGDMAMPAMLLALVLCFDHR 282 (358)
Q Consensus 255 ~~~~SmLGLGDIViPGl~ia~~lrfD~~ 282 (358)
..+|+++|+||---| -|.......|.+
T Consensus 82 ~~~~aVfGlGds~Y~-~Fc~~~~~l~~~ 108 (146)
T d1ykga1 82 NTAFAVFSLGDTSYE-FFCQSGKDFDSK 108 (146)
T ss_dssp TCEEEEEEECCTTSS-STTHHHHHHHHH
T ss_pred CCeEEEEcCcchhHH-HHHHHHHHHHHH
Confidence 357999999998886 466666777764
No 7
>d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]}
Probab=4.71 E-value=56 Score=24.95 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=49.9
Q ss_pred CcceeeeeeccCCCCCcccccccCCCCcc--cccccCcCCCEEEEecccCCCCCCC-------CCCCCccccccccchhh
Q 018319 198 GANVMVSVATQQASNPVHTVANSLSLPGL--QLITKKLELPVKIVFPRNLFGGVTP-------GGNATDFMMLGLGDMAM 268 (358)
Q Consensus 198 g~sVMvtVAtg~~~~~~~~~~~~~~~p~~--~~~~~~~~~PikL~~P~~~~~~~~~-------~~~~~~~SmLGLGDIVi 268 (358)
..+-|++|.-++.+...+..++++..+-. .......+-|+.++.|--..+..+. ......|++.|+||=-.
T Consensus 6 ~~~~~i~I~Y~S~TGnae~~A~~l~~~~~~~~~~~~~~~~~~ilitsT~G~Ge~P~~~~~F~~~l~~~~~aV~G~Gd~~y 85 (135)
T d1rlja_ 6 QSNAMVQIIFDSKTGNVQRFVNKTGFQQIRKVDEMDHVDTPFVLVTYTTNFGQVPASTQSFLEKYAHLLLGVAASGNKVW 85 (135)
T ss_dssp HHHSCCEEEECCSSSHHHHHHTTSCCSEEEETTSCSCCCSCEEEEECCBGGGBCCHHHHHHHHHHGGGEEEEEEEECGGG
T ss_pred CCCCeEEEEEECCchhHHHHHHHHhhhhhcccccccccccceEEEecCCCCCCCCHHHHHHHHhccccceEEEEeCCchH
Confidence 34667777665544444556666655433 2222345678888877543322110 01224688999999888
Q ss_pred HHHHHHHHHHhhhc
Q 018319 269 PAMLLALVLCFDHR 282 (358)
Q Consensus 269 PGl~ia~~lrfD~~ 282 (358)
|=-|.+-..++|.+
T Consensus 86 ~~~Fc~a~~~i~~~ 99 (135)
T d1rlja_ 86 GDNFAKSADTISRQ 99 (135)
T ss_dssp GGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 76777777777754
No 8
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.85 E-value=1.8e+02 Score=20.37 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=16.2
Q ss_pred HHHHHhcccCcHhHHHHHHHH-HHHHhhhhhhccc
Q 018319 161 IAFVSHVRLPNIKICAMLLVC-LFVYDIFWVFFSE 194 (358)
Q Consensus 161 i~~i~~l~l~s~k~~~iLL~~-lf~YDIFwVF~tp 194 (358)
+..|..+.+|++-++--|.+. =+.||+ |+||
T Consensus 17 YWvIHsiTIPslFiaGwlFVstGLAYdv---FGtP 48 (82)
T d2axte1 17 YWVIHSITIPALFIAGWLFVSTGLAYDV---FGTP 48 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHH---TTCC
T ss_pred EEEEEeecccHHHHhhhhheecccchhh---cCCC
Confidence 344555556665544433332 266886 4566
No 9
>d1jb0f_ f.23.16.1 (F:) Subunit III of photosystem I reaction centre, PsaF {Synechococcus elongatus [TaxId: 32046]}
Probab=3.44 E-value=2.1e+02 Score=22.15 Aligned_cols=14 Identities=29% Similarity=0.646 Sum_probs=11.2
Q ss_pred cccchhhHHHHHHH
Q 018319 262 GLGDMAMPAMLLAL 275 (358)
Q Consensus 262 GLGDIViPGl~ia~ 275 (358)
=-||.++||++-=|
T Consensus 59 HaGef~iPg~lFLY 72 (141)
T d1jb0f_ 59 RAGDFLIPSVLFLY 72 (141)
T ss_dssp GTTTTHHHHHHHHH
T ss_pred cchhhhHHHHHHHH
Confidence 56999999997544
No 10
>d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.28 E-value=1.1e+02 Score=24.48 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=21.8
Q ss_pred CCccccccccchhhHHHHHHHHHHhhhcc
Q 018319 255 ATDFMMLGLGDMAMPAMLLALVLCFDHRK 283 (358)
Q Consensus 255 ~~~~SmLGLGDIViPGl~ia~~lrfD~~~ 283 (358)
..+|+++||||.--+. |.....++|.+.
T Consensus 127 ~l~faV~GlGds~y~~-Fc~~ak~ld~~l 154 (202)
T d1tlla2 127 NVRFSVFGLGSRAYPH-FCAFGHAVDTLL 154 (202)
T ss_dssp TCEEEEEEEECTTSSS-TTHHHHHHHHHH
T ss_pred CceeEEEccCcccHHH-HhhhHHHHHHHH
Confidence 4579999999998875 677777777653
Done!