BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018320
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 150/301 (49%), Gaps = 7/301 (2%)
Query: 17 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76
A N YLR L DA + + + VVIGGGYIG+E AA+ + ++VT++ A
Sbjct: 127 ANNFRYLRTLEDAECIRRQL--IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV 184
Query: 77 MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVV 135
+ R+ P ++++YE ++ GV GT + F++ ++ KV AV DG RLP D+V+
Sbjct: 185 LERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIA 244
Query: 136 GIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
GIG+ PN L GI + +Q+S+ + AVGD A F +L R+E V +
Sbjct: 245 GIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPN 304
Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFG 253
A + A+ +AAI+ K + + P+F+S + + + G + G ++ G+ + F
Sbjct: 305 ALEQARK-IAAIL-CGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFS 362
Query: 254 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPST 313
+++ R++ E ++ T PV +L E+ L +A ++ L S
Sbjct: 363 VFYLQGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIAAAKAELSSA 422
Query: 314 P 314
P
Sbjct: 423 P 423
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 152/308 (49%), Gaps = 7/308 (2%)
Query: 17 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76
A N YLR L DA + + + VVIGGGYIG+E AA+ + ++VT++ A
Sbjct: 126 ANNFRYLRTLEDAECIRRQL--IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV 183
Query: 77 MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVV 135
+ R+ P ++++YE ++ GV GT + F++ ++ KV AV DG RLP D+V+
Sbjct: 184 LERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIA 243
Query: 136 GIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
GIG+ PN L GI + +Q+S+ + AVGD A F +L R+E V +
Sbjct: 244 GIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPN 303
Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFG 253
A + A+ +AAI+ K + + P+F+S + + + G + G ++ G+ + F
Sbjct: 304 ALEQARK-IAAIL-CGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFS 361
Query: 254 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPST 313
+++ R++ E ++ T PV +L E+ L +A ++ L S
Sbjct: 362 VFYLQGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIAAAKAELSSA 421
Query: 314 PVDGKTVP 321
+ + P
Sbjct: 422 KAELSSAP 429
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 126/248 (50%), Gaps = 7/248 (2%)
Query: 19 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78
+V YLR L ++ L M + VVIG G+IG+E AA+ + V +V MA
Sbjct: 122 DVLYLRTLDESEVLRQRMPDKK--HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA 179
Query: 79 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
R+ TP+I+SY+ + + G++ G + + + +V V L DGN LP D+VVVG+G
Sbjct: 180 RVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVVLSDGNTLPCDLVVVGVG 238
Query: 139 IRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 198
+ PN + GI V +L +S+ + A+GD A F GET R+E V +A
Sbjct: 239 VIPNVEIAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATD 298
Query: 199 SAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYW 256
A+ VAA + D +D P+F+S Q G G +VV G+ + +F A+
Sbjct: 299 QAR-CVAARLTGD-AKPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFSAFC 356
Query: 257 VNKGRLVG 264
G+L+G
Sbjct: 357 YKAGKLIG 364
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 123/253 (48%), Gaps = 7/253 (2%)
Query: 14 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73
G+D V +R DA+RL+ + + NAVVIGGGYIG+E AA L +NVT++
Sbjct: 126 GADLAGVHAVRTKEDADRLMAELDA-GAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEAL 184
Query: 74 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
+AR+ ++ +Y+ +++ GV G + + D KV V ++DG+ +P D+V
Sbjct: 185 PRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGT-KVTGVRMQDGSVIPADIV 243
Query: 134 VVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL-GETRRLEH 192
+VGIGI P G+ V ++S + VYA+GD AA G RLE
Sbjct: 244 IVGIGIVPCVGALISAGASGGNGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLES 303
Query: 193 VDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE--VVHYGNFSGT 250
V +A A A I + P+F+S + L Q G + G V G+ +
Sbjct: 304 VQNANDMATAAAKDIC--GAPVPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDPATR 361
Query: 251 TFGAYWVNKGRLV 263
+F ++ G++V
Sbjct: 362 SFSVVYLKGGKVV 374
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 14/250 (5%)
Query: 20 VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 79
V LR L DA R+ ++ S +++GGG IG+E AA+ ++V++V + M+R
Sbjct: 126 VHTLRTLEDARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR 183
Query: 80 LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGNRLPTDMVVVGIG 138
+A + Y+ ++GV F+ G V V L DG R+ DMVVVGIG
Sbjct: 184 AAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 236
Query: 139 IRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 198
+ N +L GI V +++ VYA+GDV L G R+E +A+
Sbjct: 237 VLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQN 296
Query: 199 SAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFS--GTTFGAY 255
+++P + LP+++S L Q G G E + G S F
Sbjct: 297 QGIAVARHLVDP-TAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLI 355
Query: 256 WVNKGRLVGS 265
+ KGR+VG+
Sbjct: 356 ELQKGRIVGA 365
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 14/250 (5%)
Query: 20 VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 79
V LR L DA R+ ++ S +++GGG IG+E AA+ ++V++V + M+R
Sbjct: 126 VHTLRTLEDARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR 183
Query: 80 LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGNRLPTDMVVVGIG 138
+A + Y+ ++GV F+ G V V L DG R+ DMVVVGIG
Sbjct: 184 AAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 236
Query: 139 IRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 198
+ N +L GI V +++ VYA+GDV L G R+E +A+
Sbjct: 237 VLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQN 296
Query: 199 SAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFS--GTTFGAY 255
+++P + LP+++S L Q G G E + G S F
Sbjct: 297 QGIAVARHLVDP-TAPGYAELPWYFSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLI 355
Query: 256 WVNKGRLVGS 265
+ KGR+VG+
Sbjct: 356 ELQKGRIVGA 365
>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
pdb|3GD4|B Chain B, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
Length = 511
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 24/241 (9%)
Query: 23 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTMVFPEAHCMA 78
R + D L + + + VIGGG++G E A +L + I V +FPE M
Sbjct: 182 FRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQLFPEKGNMG 239
Query: 79 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
++ ++++ E K +GVK + ++ S V S G+++ + L+DG ++ TD +V +G
Sbjct: 240 KILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVETDHIVTAVG 297
Query: 139 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
+ PN L + G L ++ GG +V LQ + S+++ GD A F LG RR+EH D
Sbjct: 298 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 355
Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFSGTTFGA 254
A S + A + K P+++ +F W G +VG E + + S T G
Sbjct: 356 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLVDSSLPTVGV 405
Query: 255 Y 255
+
Sbjct: 406 F 406
>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|B Chain B, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|C Chain C, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|D Chain D, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
Length = 535
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 24/241 (9%)
Query: 23 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTMVFPEAHCMA 78
R + D L + + + VIGGG++G E A +L + I V +FPE M
Sbjct: 206 FRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQLFPEKGNMG 263
Query: 79 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
++ ++++ E K +GVK + ++ S V S G+++ + L+DG ++ TD +V +G
Sbjct: 264 KILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVETDHIVTAVG 321
Query: 139 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
+ PN L + G L ++ GG +V LQ + S+++ GD A F LG RR+EH D
Sbjct: 322 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 379
Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFSGTTFGA 254
A S + A + K P+++ +F W G +VG E + + S T G
Sbjct: 380 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLVDSSLPTVGV 429
Query: 255 Y 255
+
Sbjct: 430 F 430
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 24/241 (9%)
Query: 23 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTMVFPEAHCMA 78
R + D L + + + VIGGG++G E A +L + I V +FPE M
Sbjct: 201 FRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQLFPEKGNMG 258
Query: 79 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
++ ++++ E K +GVK + ++ S V S G+++ + L+DG ++ TD +V +G
Sbjct: 259 KILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVETDHIVTAVG 316
Query: 139 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
+ PN L + G L ++ GG +V LQ + S+++ GD A F LG RR+EH D
Sbjct: 317 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 374
Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFSGTTFGA 254
A S + A + K P+++ +F W G +VG E + + S T G
Sbjct: 375 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLVDSSLPTVGV 424
Query: 255 Y 255
+
Sbjct: 425 F 425
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 117/241 (48%), Gaps = 24/241 (9%)
Query: 23 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK----INVTMVFPEAHCMA 78
R + D L + + + +IGGG++G E A +L V +FPE M
Sbjct: 164 FRKIGDFRSLEKISREVK--SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG 221
Query: 79 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
++ ++++ E + +GVK + ++ S V S+GK++ + L+DG ++ TD +V +G
Sbjct: 222 KILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVETDHIVAAVG 279
Query: 139 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
+ PN L + G L ++ GG +V LQ + S+++ GD A F LG RR+EH D
Sbjct: 280 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 337
Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFSGTTFGA 254
A S + A + K P+++ +F W G +VG E + + S T G
Sbjct: 338 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLVDSSLPTVGV 387
Query: 255 Y 255
+
Sbjct: 388 F 388
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 23/226 (10%)
Query: 23 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK----INVTMVFPEAHCMA 78
R + D L + + + +IGGG++G E A +L V +FPE M
Sbjct: 182 FRKIGDFRSLEKISREVK--SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG 239
Query: 79 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138
++ ++++ E + +GVK + ++ S V S+GK++ + L+DG ++ TD +V +G
Sbjct: 240 KILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVETDHIVAAVG 297
Query: 139 IRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195
+ PN L + G L ++ GG +V LQ + S+++ GD A F LG RR+EH D
Sbjct: 298 LEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR-RRVEHHDH 355
Query: 196 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 241
A S + A + K P+++ +F W G +VG V
Sbjct: 356 AVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYV 391
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 26/186 (13%)
Query: 12 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
+ G D LR++ D +R++ ++ + +A V+GGG+IG+E SL I T++
Sbjct: 122 IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL- 180
Query: 72 PEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS--SFDV------DSNGKVVA- 119
++ TP ++A + + + +GV GT LS S+ V D+ G+ A
Sbjct: 181 ---ELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAH 237
Query: 120 --------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSS 169
+ L +G L TD++++ IG+RP T L G E GGIKV +Q+S+ +
Sbjct: 238 QHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPA 297
Query: 170 VYAVGD 175
+YAVGD
Sbjct: 298 IYAVGD 303
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 9 EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 68
E + G D +N+ +R A +L N VVIG GYIG+E A + VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 69 MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 128
++ + + E ++ + G + ++ D G+V V + D N
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 129 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 187
D+VVV +G+RPNT+ +G L L G IK +++S V+AVGD
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 188 RRLEHVDSARKSAKHAVAAIMEPDK 212
+ +ARK + AV + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 9 EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 68
E + G D +N+ +R A +L N VVIG GYIG+E A + VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 69 MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 128
++ + + E ++ + G + ++ D G+V V + D N
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 129 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 187
D+VVV +G+RPNT+ +G L L G IK +++S V+AVGD
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 188 RRLEHVDSARKSAKHAVAAIMEPDK 212
+ +ARK + AV + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 9 EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 68
E + G D +N+ +R A +L N VVIG GYIG+E A + VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 69 MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 128
++ + + E ++ + G + ++ D G+V V + D N
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 129 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 187
D+VVV +G+RPNT+ +G L L G IK +++S V+AVGD
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 188 RRLEHVDSARKSAKHAVAAIMEPDK 212
+ +ARK + AV + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 9 EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 68
E + G D +N+ +R A +L N VVIG GYIG+E A + VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 69 MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 128
++ + + E ++ + G + ++ D G+V V + D N
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 129 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 187
D+VVV +G+RPNT+ +G L L G IK +++S V+AVGD
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 188 RRLEHVDSARKSAKHAVAAIMEPDK 212
+ +ARK + AV + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
Query: 9 EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 68
E + G D +N+ +R A +L N VVIG GYIG+E A + VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 69 MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 128
++ + + E ++ + G + ++ D G+V V + D N
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 129 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 187
D+VVV +G+RPNT+ +G L L G IK +++S V+AVGD
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 188 RRLEHVDSARKSAKHAVAAIMEPDK 212
+ +ARK + AV + EP K
Sbjct: 294 VNIALATNARKQGRFAVKNLEEPVK 318
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 26/186 (13%)
Query: 12 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
+ G D LR++ D +R++ ++ + +A V+GGG+IG+E SL I T++
Sbjct: 122 IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL- 180
Query: 72 PEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS--SFDV------DSNGKVVA- 119
++ TP + A + + + +GV GT LS S+ V D+ G+ A
Sbjct: 181 ---ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAH 237
Query: 120 --------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSS 169
+ L +G L TD+++ IG+RP T L G E GGIKV Q+S+ +
Sbjct: 238 QHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPA 297
Query: 170 VYAVGD 175
+YAVGD
Sbjct: 298 IYAVGD 303
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 26/186 (13%)
Query: 12 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
+ G D LR++ D +R++ ++ + +A V+GGG+IG+E SL I T++
Sbjct: 122 IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL- 180
Query: 72 PEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS--SFDV------DSNGKVVA- 119
++ TP + A + + + +GV GT LS S+ V D+ G+ A
Sbjct: 181 ---ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAH 237
Query: 120 --------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSS 169
+ L +G L TD+++ IG+RP T L G E GGIKV Q+S+ +
Sbjct: 238 QHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDPA 297
Query: 170 VYAVGD 175
+YAVGD
Sbjct: 298 IYAVGD 303
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 4/205 (1%)
Query: 9 EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT 68
E + G D +N+ +R A +L N VVIG GYIG+E A + VT
Sbjct: 117 ELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 69 MVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 128
++ + + E ++ + G + ++ D G+V V + D N
Sbjct: 177 VIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAY 233
Query: 129 PTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 187
D+VVV +G+RPNT+ +G L L G IK +++S V+AVGD
Sbjct: 234 DADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTE 293
Query: 188 RRLEHVDSARKSAKHAVAAIMEPDK 212
+ +A K + AV + EP K
Sbjct: 294 VNIALATNAMKQGRFAVKNLEEPVK 318
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 5/168 (2%)
Query: 12 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
+ G D+ V ++ DA +L ++ +IG GYIG E A + NV ++
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFE--EAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLID 179
Query: 72 PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 131
+ + F + + Y++ GV V G+ +++F+ + + +++ L DG + +D
Sbjct: 180 GHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEIITKTL-DGKEIKSD 237
Query: 132 MVVVGIGIRPNTSLFEGQLT-LEKGGIKVTGRLQSSNSSVYAVGDVAA 178
+ ++ IG RPNT L +G++ L+ G I + SSN ++A GD AA
Sbjct: 238 IAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAA 285
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 15 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74
+A+ + LR++ D +R+ + +A VIGGG+IG+E +L I VT+V A
Sbjct: 161 EEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEXVENLRERGIEVTLV-EXA 219
Query: 75 HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 134
+ + + A+Y E+ K+ V+ V + + + NG V V L+ G+ + TD ++
Sbjct: 220 NQVXPPIDYEXAAYVHEHXKNHDVELVFEDGVDAL--EENGAV--VRLKSGSVIQTDXLI 275
Query: 135 VGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGD 175
+ IG++P +SL +G L L +G IKV + Q+S+ +YA+GD
Sbjct: 276 LAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGD 318
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 6/169 (3%)
Query: 13 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 72
G D + V L+ + DA R++ +++ + +IGGG IG+E A + V V M+
Sbjct: 158 EGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIER 217
Query: 73 EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 132
H + ++ +A Y + ++ + + +F N +V AV G D+
Sbjct: 218 NDH-IGTIYDGDMAEYIYKEADKHHIEILTNENVKAF--KGNERVEAVETDKGT-YKADL 273
Query: 133 VVVGIGIRPNTSLFEGQ--LTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 179
V+V +G++PNT EG T KG I+V +Q++ VYA GD A
Sbjct: 274 VLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATH 322
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 16 DAENVCY-LRDLADANRLVNVMKSCSGGNAVVI-GGGYIGMECAASLVINKINVTMVFPE 73
DA++ Y + DL D R ++ +G V++ G G IG E A L + +V P
Sbjct: 121 DAQDALYPINDLEDYARF---RQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPC 177
Query: 74 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133
M L P A + + GV+F G VL+S G+ + +L DG +P D+V
Sbjct: 178 EQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLK--KAGEGLEAHLSDGEVIPCDLV 235
Query: 134 VVGIGIRPNTSL-FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVA 177
V +G+RP T L F L + + GI V L++S++++YA+GD A
Sbjct: 236 VSAVGLRPRTELAFAAGLAVNR-GIVVDRSLRTSHANIYALGDCA 279
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 13 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 72
G D + V L+ + DA R++ +++ + +IGGG IG+E A + V V +
Sbjct: 158 EGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXIER 217
Query: 73 EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 132
H + ++ A Y + ++ + + +F N +V AV G D+
Sbjct: 218 NDH-IGTIYDGDXAEYIYKEADKHHIEILTNENVKAF--KGNERVEAVETDKGT-YKADL 273
Query: 133 VVVGIGIRPNTSLFEGQ--LTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 179
V+V +G++PNT EG T KG I+V Q++ VYA GD A
Sbjct: 274 VLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGDCATH 322
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 4/163 (2%)
Query: 18 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 77
EN+ +++ ++ ++ +++ V+G GYIG+E A + V ++ C+
Sbjct: 171 ENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCL 230
Query: 78 ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 137
A + + + + G++ G + +V NGKV + + D N DMV++ +
Sbjct: 231 AGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKNEYDVDMVILAV 287
Query: 138 GIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAF 179
G RPNT+L G++ L G V R ++S VYA+GD A
Sbjct: 288 GFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATI 330
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 4/163 (2%)
Query: 18 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 77
EN+ +++ ++ ++ +++ V+G GYIG+E A + V ++ C+
Sbjct: 171 ENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCL 230
Query: 78 ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 137
A + + + + G++ G + +V NGKV + + D N DMV++ +
Sbjct: 231 AGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKNEYDVDMVILAV 287
Query: 138 GIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAF 179
G RPNT+L G++ L G V R ++S VYA+GD A
Sbjct: 288 GFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATI 330
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 23/220 (10%)
Query: 28 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASL-VINKINVTMVFPEAHCMARLFTPKIA 86
D LV + G VV+GG +E + V +V E + + +
Sbjct: 201 DHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP--LKLIKDNETR 258
Query: 87 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPNT 143
+Y + K +G++ + G+ ++ + D+NG+V AV N R+ TD V +G+G +P +
Sbjct: 259 AYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS 318
Query: 144 SLFEGQLTLE---KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA 200
+ L L+ KG + V LQ+S +VYAVGD+ P+++ ARKS
Sbjct: 319 AELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMF----------KARKSG 368
Query: 201 KHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE 240
+A +M +K Y P Y ++ +GE
Sbjct: 369 CYAARNVM----GEKISYTPKNYPDFLHTHYEVSFLGMGE 404
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 5/178 (2%)
Query: 12 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV-INKINVTMV 70
+ G D V + +L +A + + + + AV++GGG+IG+E A SL + I+ T+V
Sbjct: 130 VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVV 189
Query: 71 FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT 130
M + ++ + V G + + NGKV V + D L
Sbjct: 190 ELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLDA 247
Query: 131 DMVVVGIGIRPNTSLF-EGQLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 186
D+V++ G+ PNT L + L L+ +G I V R+++S+ ++A GD P + G+
Sbjct: 248 DLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGK 305
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 99/232 (42%), Gaps = 9/232 (3%)
Query: 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI 65
+ L GS V LR D L + S + +++GGG IG E A + +
Sbjct: 110 RARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSAT--RLLIVGGGLIGCEVATTARKLGL 167
Query: 66 NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG 125
+VT++ + R+ +I ++ GV+ GT + F G++ V DG
Sbjct: 168 SVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFS--GEGQLEQVMASDG 225
Query: 126 NRLPTDMVVVGIGIRPNTSLF-EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 184
D ++ +G P L + L ++G + V + V+AVGDVA++PL+
Sbjct: 226 RSFVADSALICVGAEPADQLARQAGLACDRG-VIVDHCGATLAKGVFAVGDVASWPLR-A 283
Query: 185 GETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD 236
G R LE +A++ A AAI+ K LP ++ + Q GD
Sbjct: 284 GGRRSLETYMNAQRQAAAVAAAIL--GKNVSAPQLPVSWTEIAGHRMQMAGD 333
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 8/141 (5%)
Query: 45 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
VV+GGGYIG+E + V++V + + ++ + E K G+ G
Sbjct: 175 VVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGH 233
Query: 105 VLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIKVT 160
+ ++ NG ++A + + G RL D V+V +G RP T F + L + I +
Sbjct: 234 SVEGYE---NGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAID 290
Query: 161 GRLQSSNSSVYAVGDVAAFPL 181
R Q+S +V+A+GDVA P+
Sbjct: 291 ERCQTSMHNVWAIGDVAGEPM 311
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 45 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
VVIGGGYIG+E + VT++ ++ F ++A+ ++ K KGV+ V
Sbjct: 174 VVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNA 232
Query: 105 VLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR- 162
+ + +G V + + D V+V +G RPNT +L LE+ GIK+T R
Sbjct: 233 LAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD----ELGLEQIGIKMTNRG 288
Query: 163 -------LQSSNSSVYAVGDVAAFP 180
++S +++A+GD+ P
Sbjct: 289 LIEVDQQCRTSVPNIFAIGDIVPGP 313
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 45 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
VVIG G IG+E + +VT V H +I+ ++ + +G KF T
Sbjct: 203 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 262
Query: 105 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 156
++ S+GK+ V++ G + + D+++V IG RP N L E + L+ +G
Sbjct: 263 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 322
Query: 157 IKVTGRLQSSNSSVYAVGDVAAFPL 181
I V R Q+ ++YA+GDV A P+
Sbjct: 323 IPVNTRFQTKIPNIYAIGDVVAGPM 347
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 45 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
VVIG G IG+E + +VT V H +I+ ++ + +G KF T
Sbjct: 182 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 241
Query: 105 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 156
++ S+GK+ V++ G + + D+++V IG RP N L E + L+ +G
Sbjct: 242 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 301
Query: 157 IKVTGRLQSSNSSVYAVGDVAAFPL 181
I V R Q+ ++YA+GDV A P+
Sbjct: 302 IPVNTRFQTKIPNIYAIGDVVAGPM 326
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 45 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
VVIG G IG+E + +VT V H +I+ ++ + +G KF T
Sbjct: 182 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 241
Query: 105 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 156
++ S+GK+ V++ G + + D+++V IG RP N L E + L+ +G
Sbjct: 242 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 301
Query: 157 IKVTGRLQSSNSSVYAVGDVAAFPL 181
I V R Q+ ++YA+GDV A P+
Sbjct: 302 IPVNTRFQTKIPNIYAIGDVVAGPM 326
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 45 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP---KIASYYEEYYKSKGVKFV 101
+V+GGG IG+E +V +++ ++ E M R+ +++ E +K +G+
Sbjct: 171 IVVGGGVIGLEL--GVVWHRLGAEVIVLE--YMDRILPTMDLEVSRAAERVFKKQGLTIR 226
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 157
G +++ ++ G V L G L D V+V +G RP T G T E+G I
Sbjct: 227 TGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRI 284
Query: 158 KVTGRLQSSNSSVYAVGDVAAFPL 181
V L++ +YA+GDV P+
Sbjct: 285 PVDEHLRTRVPHIYAIGDVVRGPM 308
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 23 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82
LR+L D + + +K+ +V+G GY+ +E +L ++ T++ + + +L
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142
+ + + + + +++ NG + + G DM++ G+G PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 143 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194
+ E + L+ KG I V + +++ ++YA+GD+A T HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 23 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82
LR+L D + + +K+ +V+G GY+ +E +L ++ T++ + + +L
Sbjct: 130 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 188
Query: 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142
+ + + + + +++ NG + + G DM++ G+G PN
Sbjct: 189 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 242
Query: 143 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194
+ E + L+ KG I V + +++ ++YA+GD+A T HVD
Sbjct: 243 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 287
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 23 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82
LR+L D + + +K+ +V+G GY+ +E +L ++ T++ + + +L
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142
+ + + + + +++ NG + + G DM++ G+G PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 143 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194
+ E + L+ KG I V + +++ ++YA+GD+A T HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 23 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82
LR+L D + + +K+ +V+G GY+ +E +L ++ T++ + + +L
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142
+ + + + + +++ NG + + G DM++ G+G PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 143 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194
+ E + L+ KG I V + +++ ++YA+GD+A T HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 23 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82
LR+L D + + +K+ +V+G GY+ +E +L ++ T++ + + +L
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142
+ + + + + +++ NG + + G DM++ G+G PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 143 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194
+ E + L+ KG I V + +++ ++YA+GD+A T HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 23 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82
LR+L D + + +K+ +V+G GY+ +E +L ++ T++ + + +L
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142
+ + + + + +++ NG + + G DM++ G+G PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 143 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194
+ E + L+ KG I V + +++ ++YA+GD+A T HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 23 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82
LR+L D + + +K+ +V+G GY+ +E +L ++ T++ + + +L
Sbjct: 129 LRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIH-RSDKINKLMD 187
Query: 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142
+ + + + + +++ NG + + G DM++ G+G PN
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEHYDMIIEGVGTHPN 241
Query: 143 TSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194
+ E + L+ KG I V + +++ ++YA+GD+A T HVD
Sbjct: 242 SKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------TSHYRHVD 286
>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
pdb|4DNA|B Chain B, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
Length = 463
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 45 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
++ GGGYI +E A + T+++ ++R F + KG++ +
Sbjct: 174 LIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDXRRGLHAAXEEKGIRILCED 232
Query: 105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF----EGQLTLEKGGIKVT 160
++ S D++G+ VA + G + D V + +G PNT+ G T E G I V
Sbjct: 233 IIQSVSADADGRRVATTXKHGE-IVADQVXLALGRXPNTNGLGLEAAGVRTNELGAIIVD 291
Query: 161 GRLQSSNSSVYAVGDV 176
++S +YA+GDV
Sbjct: 292 AFSRTSTPGIYALGDV 307
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 46 VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 105
+IG GYIG+E A L VT+V E + + F P +++ E ++G++
Sbjct: 171 IIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHAQGIETHLEFA 229
Query: 106 LSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSLFEGQLTLEKGGIKV----- 159
+++ + D+ G + +DG RL D V+ +G PNT L LE GI+V
Sbjct: 230 VAALERDAQGTTLVA--QDGTRLEGFDSVIWAVGRAPNTR----DLGLEAAGIEVQSNGM 283
Query: 160 --TGRLQSSN-SSVYAVGDV 176
T Q++N VYA+GD+
Sbjct: 284 VPTDAYQNTNVPGVYALGDI 303
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V+G GYIG+ECA L T++ + R F ++A + +G+ F+
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 245
Query: 102 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGIGIR---PNTSLFEGQLTLEK 154
+ TV S + +GK++ N+ G D V+ IG + + +L +T++K
Sbjct: 246 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 305
Query: 155 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 197
I V + ++ +++YAVGD VA +LL G T+R+++ D A
Sbjct: 306 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 365
Query: 198 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 223
++A + E D +F D + F+
Sbjct: 366 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 395
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V+G GYIG+ECA L T++ + R F ++A + +G+ F+
Sbjct: 184 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 241
Query: 102 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGIGIR---PNTSLFEGQLTLEK 154
+ TV S + +GK++ N+ G D V+ IG + + +L +T++K
Sbjct: 242 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 301
Query: 155 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 197
I V + ++ +++YAVGD VA +LL G T+R+++ D A
Sbjct: 302 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 361
Query: 198 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 223
++A + E D +F D + F+
Sbjct: 362 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 391
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 19/151 (12%)
Query: 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 99
S G +V+G Y+ +ECA L ++ T++ R F +++S E+ +S G +
Sbjct: 184 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS--IPLRGFDQQMSSLVTEHMESHGTQ 241
Query: 100 FVKGTVLSSF-DVDSNGKVVAVNLRDGNRLPT---DMVVVGIGIRPNTSLFEGQLTLEKG 155
F+KG V S + +N V + T D V+ IG P T L LEK
Sbjct: 242 FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRT----LNLEKA 297
Query: 156 GIKVTGRLQ---------SSNSSVYAVGDVA 177
GI + Q +S +YA+GDVA
Sbjct: 298 GISTNPKNQKIIVDAQEATSVPHIYAIGDVA 328
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V+G GYIG+ECA L T++ + R F ++A + +G+ F+
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 245
Query: 102 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGIGIR---PNTSLFEGQLTLEK 154
+ TV S + +GK++ N+ G D V+ IG + + +L +T++K
Sbjct: 246 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 305
Query: 155 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 197
I V + ++ +++YAVGD VA +LL G T+R+++ D A
Sbjct: 306 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 365
Query: 198 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 223
++A + E D +F D + F+
Sbjct: 366 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 395
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 19/151 (12%)
Query: 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 99
S G +V+G Y+ +ECA L ++ T++ R F +++S E+ +S G +
Sbjct: 210 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI--PLRGFDQQMSSLVTEHMESHGTQ 267
Query: 100 FVKGTVLSSF-DVDSNGKVVAVNLRDGNRLPT---DMVVVGIGIRPNTSLFEGQLTLEKG 155
F+KG V S + +N V + T D V+ IG P T L LEK
Sbjct: 268 FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR----TLNLEKA 323
Query: 156 GIKVTGRLQ---------SSNSSVYAVGDVA 177
GI + Q +S +YA+GDVA
Sbjct: 324 GISTNPKNQKIIVDAQEATSVPHIYAIGDVA 354
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 17/152 (11%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +VIG Y+ +ECA L +VT++ + R F ++A +Y ++ GVKF
Sbjct: 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFA 344
Query: 102 KGTV------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ- 149
K V L D ++N +V + DG + + V+ +G P S +
Sbjct: 345 KLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCET 404
Query: 150 --LTLEKGG-IKVTGRLQSSNSSVYAVGDVAA 178
+ L+K G + T Q++ S+VYA+GD+ A
Sbjct: 405 VGVKLDKNGRVVCTDDEQTTVSNVYAIGDINA 436
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 17/152 (11%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +VIG Y+ +ECA L +VT++ + R F ++A +Y ++ GVKF
Sbjct: 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFA 344
Query: 102 KGTV------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ- 149
K V L D ++N +V + DG + + V+ +G P S +
Sbjct: 345 KLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCET 404
Query: 150 --LTLEKGG-IKVTGRLQSSNSSVYAVGDVAA 178
+ L+K G + T Q++ S+VYA+GD+ A
Sbjct: 405 VGVKLDKNGRVVCTDDEQTTVSNVYAIGDINA 436
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 17/152 (11%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +VIG Y+ +ECA L +VT++ + R F ++A +Y ++ GVKF
Sbjct: 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFA 344
Query: 102 KGTV------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ- 149
K V L D ++N +V + DG + + V+ +G P S +
Sbjct: 345 KLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCET 404
Query: 150 --LTLEKGG-IKVTGRLQSSNSSVYAVGDVAA 178
+ L+K G + T Q++ S+VYA+GD+ A
Sbjct: 405 VGVKLDKNGRVVCTDDEQTTVSNVYAIGDINA 436
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 46 VIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
V+G GYI +E A VIN + T +F H R F P I+ E ++G +
Sbjct: 172 VVGAGYIAVELAG--VINGLGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNA 229
Query: 105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP---NTSLFEGQLTLEKGGIKVTG 161
+ + +++G + + L DG D ++ IG P N +L + + G V
Sbjct: 230 IPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVD 288
Query: 162 RLQSSN-SSVYAVGD 175
+ Q++N +YAVGD
Sbjct: 289 KYQNTNIEGIYAVGD 303
>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|B Chain B, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|C Chain C, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
Length = 449
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 28 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS 87
DA + M+ N V+IGGGYIG+E A + NVTM+ + R F ++
Sbjct: 135 DALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTD 194
Query: 88 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 147
EE K K V + + ++ +V V + D ++V++ GI+PN L +
Sbjct: 195 ILEEKLK-KHVNLRLQEI--TMKIEGEERVEKV-VTDAGEYKAELVILATGIKPNIELAK 250
Query: 148 --GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 198
G E G I ++Q+S +VYA GDVA ETR HV + R+
Sbjct: 251 QLGVRIGETGAIWTNEKMQTSVENVYAAGDVA--------ETR---HVITGRR 292
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 33 VNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY 92
V ++ G V++GGG ++ L+ N +VT+V K A E
Sbjct: 155 VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH---GKTAHEVERA 211
Query: 93 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGNR--LPTDMVVVGIGIRPNTS-LFE 147
+ + T ++S + +SNG + V+LR DG++ + D +++ IG + N L
Sbjct: 212 RANGTIDVYLETEVASIE-ESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLAR 270
Query: 148 GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
L L + + V +++S +YA GD+A +P KL
Sbjct: 271 WDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGKL 306
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 45 VVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 103
V++GGGYIG+E A + + + V T + + R F + + +KG+ +
Sbjct: 195 VIVGGGYIGVEFAN--IFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYE 252
Query: 104 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVT--- 160
+S V S V L +G + D V++ G PNT+ L LE+ G+KV
Sbjct: 253 ATVSQ--VQSTENCYNVVLTNGQTICADRVMLATGRVPNTT----GLGLERAGVKVNEFG 306
Query: 161 -----GRLQSSNSSVYAVGDV 176
++ ++ S ++AVGDV
Sbjct: 307 AVVVDEKMTTNVSHIWAVGDV 327
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 117 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 165
V V LRD L + V IG PNT++FEGQL LE G IKV + Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 166 SNSSVYAVGDV 176
S V+A GDV
Sbjct: 277 SIPGVFAAGDV 287
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 117 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 165
V V LRD L + V IG PNT++FEGQL LE G IKV + Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 166 SNSSVYAVGDV 176
S V+A GDV
Sbjct: 277 SIPGVFAAGDV 287
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 117 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 165
V V LRD L + V IG PNT++FEGQL LE G IKV + Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 166 SNSSVYAVGDV 176
S V+A GDV
Sbjct: 277 SIPGVFAAGDV 287
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 117 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 165
V V LRD L + V IG PNT++FEGQL LE G IKV + Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 166 SNSSVYAVGDV 176
S V+A GDV
Sbjct: 277 SIPGVFAAGDV 287
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 117 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 165
V V LRD L + V IG PNT++FEGQL LE G IKV + Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 166 SNSSVYAVGDV 176
S V+A GDV
Sbjct: 277 SIPGVFAAGDV 287
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 45 VVIGGGYIGMECAASLVINKINVTMVFPE-AHCMARLFTPKIASYYEEYYKSKGVKFVKG 103
VVIG GYIG+E + V +I + E A + +I ++ + +G+KF
Sbjct: 181 VVIGAGYIGLEMGS--VWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLK 238
Query: 104 TVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFE----GQLTLEKGG 156
T + D +G + V G + D+V+V G P TS G T + G
Sbjct: 239 TKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGR 298
Query: 157 IKVTGRLQSSNSSVYAVGDVAAFPL 181
I V R ++ S VYA+GDV P+
Sbjct: 299 ILVNERFSTNVSGVYAIGDVIPGPM 323
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF 100
G VIGGG G+E A L +VT++ F P++ + K + +K
Sbjct: 355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE---------FAPEMKADQVLQDKVRSLKN 405
Query: 101 VKGTVLSSFDVDSNG---KVVAVNLRDGNRLPTDM-------VVVGIGIRPNTSLFEGQL 150
V +L++ + G KVV + RD R+ D+ + V IG+ PNT EG L
Sbjct: 406 VD-IILNAQTTEVKGDGSKVVGLEYRD--RVSGDIHSVALAGIFVQIGLLPNTHWLEGAL 462
Query: 151 TLEK-GGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 184
+ G I + + ++S V+A GD P K +
Sbjct: 463 ERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYKQI 497
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 45 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
+ +GGG+I +E A K VT+ + + R F + + + G++ +
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPKDGQVTLCY-RGEMILRGFDHTLREELTKQLTANGIQIL 250
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIK 158
+ +++++G +V G ++ D+V++ IG P T + Q + ++ GG++
Sbjct: 251 TKENPAKVELNADGSK-SVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQ 309
Query: 159 VTGRLQSSNSSVYAVGDV 176
V +++ S++YA+GDV
Sbjct: 310 VDEYSRTNVSNIYAIGDV 327
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 45 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
+ +GGG+I +E A K VT+ + + R F + + + G++ +
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPKDGQVTLCY-RGEMILRGFDHTLREELTKQLTANGIQIL 250
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIK 158
+ +++++G +V G ++ D+V++ IG P T + Q + ++ GG++
Sbjct: 251 TKENPAKVELNADGSK-SVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQ 309
Query: 159 VTGRLQSSNSSVYAVGDV 176
V +++ S++YA+GDV
Sbjct: 310 VDEYSRTNVSNIYAIGDV 327
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 45 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
+ +GGG+I +E A K VT+ + + R F + + + G++ +
Sbjct: 193 LTVGGGFISVEFAGIFNAYKPKDGQVTLCY-RGEMILRGFDHTLREELTKQLTANGIQIL 251
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIK 158
+ +++++G +V G ++ D+V++ IG P T + Q + ++ GG++
Sbjct: 252 TKENPAKVELNADGSK-SVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQ 310
Query: 159 VTGRLQSSNSSVYAVGDV 176
V +++ S++YA+GDV
Sbjct: 311 VDEYSRTNVSNIYAIGDV 328
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 45 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
+ +GGG+I +E A K VT+ + + R F + + + G++ +
Sbjct: 191 LTVGGGFISVEFAGIFNAYKPKDGQVTLCY-RGEMILRGFDHTLREELTKQLTANGIQIL 249
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIK 158
+ +++++G +V G ++ D+V++ IG P T + Q + ++ GG++
Sbjct: 250 TKENPAKVELNADGSK-SVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQ 308
Query: 159 VTGRLQSSNSSVYAVGDV 176
V +++ S++YA+GDV
Sbjct: 309 VDEYSRTNVSNIYAIGDV 326
>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
pdb|2QAE|B Chain B, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
Length = 468
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 45 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
VVIGGG IG+E + VT+V C L + K++ +KF+ T
Sbjct: 178 VVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTST 237
Query: 105 VLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLTL--------EK 154
+ + + + V ++G R + + ++V +G RP F G L L E+
Sbjct: 238 KVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRP----FTGGLGLDKINVAKNER 293
Query: 155 GGIKVTGRLQSSNSSVYAVGDV 176
G +K+ ++S VYA+GDV
Sbjct: 294 GFVKIGDHFETSIPDVYAIGDV 315
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V+G Y+ +ECA L ++VT++ + R F +A+ E+ + G+KF+
Sbjct: 191 GKTLVVGASYVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFI 248
Query: 102 KGTVLSSFDVDSNG-----KVVAVNLRDGNRLPTDMVVVGIGI-RPNTSLFEG------Q 149
+ V + + G KV A + + + V + + R + + G +
Sbjct: 249 RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVK 308
Query: 150 LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
+ + G I VT Q++ +YA+GD+ L+L
Sbjct: 309 INEKTGKIPVTDEEQTNVPYIYAIGDILEGKLEL 342
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V+G Y+ +ECA L ++VT++ + R F +A+ E+ + G+KF+
Sbjct: 191 GKTLVVGASYVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFI 248
Query: 102 KGTVLSSFDVDSNG-----KVVAVNLRDGNRLPTDMVVVGIGI-RPNTSLFEG------Q 149
+ V + + G KV A + + + V + + R + + G +
Sbjct: 249 RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVK 308
Query: 150 LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
+ + G I VT Q++ +YA+GD+ L+L
Sbjct: 309 INEKTGKIPVTDEEQTNVPYIYAIGDILEGKLEL 342
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 8/135 (5%)
Query: 46 VIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 104
V+G GYIG+E VIN + T +F F P I+ E ++G +
Sbjct: 172 VVGAGYIGVELGG--VINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNA 229
Query: 105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP---NTSLFEGQLTLEKGGIKVTG 161
+ + +++G + + L DG D ++ IG P N +L + + G V
Sbjct: 230 IPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVD 288
Query: 162 RLQSSN-SSVYAVGD 175
+ Q++N +YAVGD
Sbjct: 289 KYQNTNIEGIYAVGD 303
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 246
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 154
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 247 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 302
Query: 155 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 192
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 303 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 351
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 41 GGNAVVIGGGYIGMECAASL--VINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 98
G VIGGG G+E A L ++ + + PE ++ K+ S K V
Sbjct: 144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-DQVLQDKLRSL-------KNV 195
Query: 99 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM-------VVVGIGIRPNTSLFEGQLT 151
+ + D + KVV + RD R+ D+ + V IG+ PNT+ EG +
Sbjct: 196 DIILNAQTTEVKGDGS-KVVGLEYRD--RVSGDIHNIELAGIFVQIGLLPNTNWLEGAVE 252
Query: 152 LEK-GGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 184
+ G I + + +++ V+A GD P K +
Sbjct: 253 RNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQI 286
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNXTEELENAGVEVL 246
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 154
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 247 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDXLLWAIGRVPNTK----DLSLNK 302
Query: 155 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 192
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 303 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 351
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 171 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 229
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 154
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 230 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 285
Query: 155 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 192
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 286 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 334
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 246
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 154
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 247 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 302
Query: 155 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 192
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 303 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 351
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 246
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 154
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 247 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 302
Query: 155 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 192
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 303 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 351
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 173 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 231
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 154
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 232 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 287
Query: 155 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 192
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 288 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 336
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 171 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 229
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 154
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 230 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 285
Query: 155 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 192
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 286 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 334
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 189 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 247
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 154
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 248 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 303
Query: 155 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 192
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 304 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 352
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 187 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 245
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 154
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 246 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 301
Query: 155 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 192
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 302 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 350
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 23/169 (13%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V++G GYI +E A L +++ + R F I++ E ++ GV+ +
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVL 246
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-------TDMVVVGIGIRPNTSLFEGQLTLEK 154
K + + +G V++ RLP D ++ IG PNT L+L K
Sbjct: 247 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK----DLSLNK 302
Query: 155 GGIK-------VTGRLQSSN-SSVYAVGDVAAFPLKL---LGETRRLEH 192
GI+ + Q++N +YAVGDV L + R+L H
Sbjct: 303 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAH 351
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 19/147 (12%)
Query: 41 GGNAVVIGGGYIGMECAASLVINKINVTMV--FPEAHCMARLFTPKIASYYEEYYKSKGV 98
G V IGGG G A S+ NVT++ P+ C + Y + K + +
Sbjct: 155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---------ENAYVQEIKKRNI 205
Query: 99 KFVKGTVLSSFDVDSNGKVVAVNLRDGNR-----LPTDMVVVGIGIRPNTSLFE--GQLT 151
++ ++ V KV V +D + TD V + +G+ P TS + G
Sbjct: 206 PYIMNAQVTEI-VGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKL 264
Query: 152 LEKGGIKVTGRLQSSNSSVYAVGDVAA 178
E+G I V R ++S VYA GDV +
Sbjct: 265 DERGYIVVDSRQRTSVPGVYAAGDVTS 291
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 16 DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75
D E + R L D + L + + +V+G G G E + + VT+V + H
Sbjct: 165 DGERILTWRQLYDLDALPD--------HLIVVGSGVTGAEFVDAYTELGVPVTVVASQDH 216
Query: 76 CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 135
+ A EE + +GV+ K +S V G V V + DG + ++
Sbjct: 217 VLP-YEDADAALVLEESFAERGVRLFKNARAAS--VTRTGAGVLVTMTDGRTVEGSHALM 273
Query: 136 GIGIRPNTSLFEGQLTLEKGGIKVTGR---------LQSSNSSVYAVGD 175
IG PNTS L LE+ GI++ GR ++ + +YA GD
Sbjct: 274 TIGSVPNTS----GLGLERVGIQL-GRGNYLTVDRVSRTLATGIYAAGD 317
>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|B Chain B, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|C Chain C, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|D Chain D, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|E Chain E, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|F Chain F, X-Ray Structure Of Human Thioredoxin Reductase 1
Length = 519
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V+G Y+ +ECA L ++VT++ + R F +A+ E+ + G+KF+
Sbjct: 211 GKTLVVGASYVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFI 268
Query: 102 KGTV---LSSFDVDSNGKVVAV----NLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEK 154
+ V + + + G++ V N + + V++ IG T ++ LE
Sbjct: 269 RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR----KIGLET 324
Query: 155 GGIKV---TGRL------QSSNSSVYAVGDV 176
G+K+ TG++ Q++ +YA+GD+
Sbjct: 325 VGVKINEKTGKIPVTDEEQTNVPYIYAIGDI 355
>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 519
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V+G Y+ +ECA L ++VT++ + R F +A+ E+ + G+KF+
Sbjct: 211 GKTLVVGASYVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFI 268
Query: 102 KGTV---LSSFDVDSNGKVVAV----NLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEK 154
+ V + + + G++ V N + + V++ IG T ++ LE
Sbjct: 269 RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR----KIGLET 324
Query: 155 GGIKV---TGRL------QSSNSSVYAVGDV 176
G+K+ TG++ Q++ +YA+GD+
Sbjct: 325 VGVKINEKTGKIPVTDEEQTNVPYIYAIGDI 355
>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZB|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZC|A Chain A, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|B Chain B, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|C Chain C, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|D Chain D, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
Length = 513
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V+G Y+ +ECA L ++VT++ + R F +A+ E+ + G+KF+
Sbjct: 205 GKTLVVGASYVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFI 262
Query: 102 KGTV---LSSFDVDSNGKVVAV----NLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEK 154
+ V + + + G++ V N + + V++ IG T ++ LE
Sbjct: 263 RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR----KIGLET 318
Query: 155 GGIKV---TGRL------QSSNSSVYAVGDV 176
G+K+ TG++ Q++ +YA+GD+
Sbjct: 319 VGVKINEKTGKIPVTDEEQTNVPYIYAIGDI 349
>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|B Chain B, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|C Chain C, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|D Chain D, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|E Chain E, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|F Chain F, Crystal Structure Of Human Thioredoxin Reductase 1
Length = 521
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V+G Y+ +ECA L ++VT++ + R F +A+ E+ + G+KF+
Sbjct: 213 GKTLVVGASYVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFI 270
Query: 102 KGTV---LSSFDVDSNGKVVAV----NLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEK 154
+ V + + + G++ V N + + V++ IG T ++ LE
Sbjct: 271 RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR----KIGLET 326
Query: 155 GGIKV---TGRL------QSSNSSVYAVGDV 176
G+K+ TG++ Q++ +YA+GD+
Sbjct: 327 VGVKINEKTGKIPVTDEEQTNVPYIYAIGDI 357
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 45 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
+ +GGG+I +E A K VT+ + + + R F I + + G++ +
Sbjct: 192 LTVGGGFISVEFAGIFNAYKPPGGKVTLCY-RNNLILRGFDETIREEVTKQLTANGIEIM 250
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 157
+ ++++G V G L D+V++ IG P T+ + G KGG+
Sbjct: 251 TNENPAKVSLNTDGSK-HVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGV 309
Query: 158 KVTGRLQSSNSSVYAVGDV 176
+V +++ ++YA+GD+
Sbjct: 310 QVDEFSRTNVPNIYAIGDI 328
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 45 VVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
+ +GGG+I +E A K VT+ + + + R F I + + G++ +
Sbjct: 195 LTVGGGFISVEFAGIFNAYKPPGGKVTLCY-RNNLILRGFDETIREEVTKQLTANGIEIM 253
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 157
+ ++++G V G L D+V++ IG P T+ + G KGG+
Sbjct: 254 TNENPAKVSLNTDGSK-HVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGV 312
Query: 158 KVTGRLQSSNSSVYAVGDV 176
+V +++ ++YA+GD+
Sbjct: 313 QVDEFSRTNVPNIYAIGDI 331
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 127/277 (45%), Gaps = 36/277 (12%)
Query: 18 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 77
E + LR + DA+R+ +++ G A++IGGG+IG+E A +L +V ++ A +
Sbjct: 122 EYLLTLRTIFDADRIKESIENS--GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL 179
Query: 78 ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 137
++++ ++ + GVKF L+S +++N + V N + + + I
Sbjct: 180 G--LDEELSNMIKDMLEETGVKF----FLNSELLEANEEGVLTN---SGFIEGKVKICAI 230
Query: 138 GIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSAR 197
GI PN L GI + ++S VYA+GD A + + G + +A
Sbjct: 231 GIVPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAK------AAM 284
Query: 198 KSAKHAVAAIM--EPDKTD-KFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGA 254
+ A+ +A I+ EP + + KF F + + L G+ GE G +
Sbjct: 285 EQAR-VLADILKGEPRRYNFKFRSTVFKFGK---LQIAIIGNTKGE----GKWIEDNTKV 336
Query: 255 YWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDL 291
++ N G+++G+ + + I KAT+L+ + D
Sbjct: 337 FYEN-GKIIGAVV-------FNDIRKATKLEKEILDF 365
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 25 DLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMV--FPEAHCMARLFT 82
D+ D+ R + V + +VIGGG +G+E VT++ PE
Sbjct: 154 DVWDSTRALKVEEGLPK-RLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQG---D 209
Query: 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG---KVVAVNLRDGNRLPTDMVVVGIGI 139
P+ A+ + +G++ T ++ +G ++ +G + D V+V +G
Sbjct: 210 PETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGR 269
Query: 140 RPNTSLFEGQLTLEKGGIKV--------TGRLQSSNSSVYAVGDVAAFPL 181
+P T EG L LEK G+KV R+++S VYA+GD A PL
Sbjct: 270 KPRT---EG-LGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPL 315
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 10/207 (4%)
Query: 12 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 71
+ GS E + + L+ A V ++++ VIG G IG E LV K V +
Sbjct: 120 IRGSQTEKLLKYKFLSGALAAVPLLENSQ--TVAVIGAGPIGXEAIDFLVKXKKTVHVFE 177
Query: 72 PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 131
+ + + F + + ++ + + V F + + +NG V+ + ++ + D
Sbjct: 178 SLENLLPKYFDKEXVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQE---ISCD 234
Query: 132 MVVVGIGIRPNTSLFEG--QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR 189
+ + + P + + Q L++ I V LQ+S +V+A+GD + + + ET
Sbjct: 235 SGIFALNLHPQLAYLDKKIQRNLDQT-IAVDAYLQTSVPNVFAIGDCISVXNEPVAETFY 293
Query: 190 LEHVDSARKSAKHAVAAIMEPDKTDKF 216
V++A ++ VA +E +KT +F
Sbjct: 294 APLVNNAVRTGL-VVANNLE-EKTHRF 318
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 101
G +V+G Y+ +EC+ L N + + + R F + A + Y + +GV F
Sbjct: 224 GKTLVVGASYVALECSGFL--NSLGYDVTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFK 281
Query: 102 KGTV---LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT---SLFEGQLTLEKG 155
G + L+ D + V D D V+ IG + + +L + + K
Sbjct: 282 NGILPKKLTKMD-----DKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKS 336
Query: 156 GIKVTG-RLQSSN-SSVYAVGDVA 177
K+ L +N S++AVGDVA
Sbjct: 337 NNKIIADHLSCTNIPSIFAVGDVA 360
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPN 142
++ E+ +K GV + T + S D +V +DG L + V+ IG PN
Sbjct: 216 VSKEIEKQFKKLGVTILTATKVESI-ADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPN 274
Query: 143 TSLFEGQLTLEKGGIKVTGR--------LQSSNSSVYAVGDV 176
+ L+K G+ +T R ++++ +YA+GDV
Sbjct: 275 VEGY----GLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDV 312
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 46 VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGVKFV 101
VIG G IG+E + V ++ + EA M + F P ++A ++ +G+K +
Sbjct: 185 VIGAGVIGLELGS--VWARLGAEVTVLEA--MDK-FLPAVDEQVAKEAQKILTKQGLKIL 239
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSLF---EGQLTL-EKGG 156
G ++ +V + V +G + D ++V +G RP T+ + +TL E+G
Sbjct: 240 LGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGF 299
Query: 157 IKVTGRLQSSNSSVYAVGDV 176
I V +S VYA+GDV
Sbjct: 300 IYVDDYCATSVPGVYAIGDV 319
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 9/140 (6%)
Query: 44 AVVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF 100
A+ +GGGYI +E A K V + + + R F ++ E ++ G+
Sbjct: 191 ALCVGGGYISIEFAGIFNAYKARGGQVDLAY-RGDMILRGFDSELRKQLTEQLRANGINV 249
Query: 101 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGG 156
+ +++G V G D+V++ IG P + + G + G
Sbjct: 250 RTHENPAKVTKNADGTRHVV-FESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGA 308
Query: 157 IKVTGRLQSSNSSVYAVGDV 176
IKV +++ ++YA+GDV
Sbjct: 309 IKVDAYSKTNVDNIYAIGDV 328
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 9/140 (6%)
Query: 44 AVVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF 100
A+ +GGGYI +E A K V + + + R F ++ E ++ G+
Sbjct: 190 ALCVGGGYISIEFAGIFNAYKARGGQVDLAY-RGDMILRGFDSELRKQLTEQLRANGINV 248
Query: 101 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGG 156
+ +++G V G D+V++ IG P + + G + G
Sbjct: 249 RTHENPAKVTKNADGTRHVV-FESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGA 307
Query: 157 IKVTGRLQSSNSSVYAVGDV 176
IKV +++ ++YA+GDV
Sbjct: 308 IKVDAYSKTNVDNIYAIGDV 327
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 9/140 (6%)
Query: 44 AVVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF 100
A+ +GGGYI +E A K V + + + R F ++ E ++ G+
Sbjct: 190 ALCVGGGYISIEFAGIFNAYKARGGQVDLAY-RGDMILRGFDSELRKQLTEQLRANGINV 248
Query: 101 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGG 156
+ +++G V G D+V++ IG P + + G + G
Sbjct: 249 RTHENPAKVTKNADGTRHVV-FESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGA 307
Query: 157 IKVTGRLQSSNSSVYAVGDV 176
IKV +++ ++YA+GDV
Sbjct: 308 IKVDAYSKTNVDNIYAIGDV 327
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 9/140 (6%)
Query: 44 AVVIGGGYIGMECAASLVINKI---NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF 100
A+ +GGGYI +E A K V + + + R F ++ E ++ G+
Sbjct: 191 ALCVGGGYISIEFAGIFNAYKARGGQVDLAY-RGDMILRGFDSELRKQLTEQLRANGINV 249
Query: 101 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGG 156
+ +++G V G D+V++ IG P + + G + G
Sbjct: 250 RTHENPAKVTKNADGTRHVV-FESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGA 308
Query: 157 IKVTGRLQSSNSSVYAVGDV 176
IKV +++ ++YA+GDV
Sbjct: 309 IKVDAYSKTNVDNIYAIGDV 328
>pdb|3UC1|A Chain A, Mycobacterium Tuberculosis Gyrase Type Iia Topoisomerase
C-Terminal Domain
Length = 327
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 100 FVKGTVLSSFDVDSNGKVVAVNLRDGNRL 128
VK + L+ FD + +G +VAVNLRD + L
Sbjct: 120 LVKKSKLTDFDSNRSGGIVAVNLRDNDEL 148
>pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera
pdb|1ZX9|A Chain A, Crystal Structure Of Tn501 Mera
Length = 467
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 29/149 (19%)
Query: 46 VIGGGYIGMECAASLVI--NKINV----TMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 99
VIG + +E A + +K+ V T+ F E P I ++++G++
Sbjct: 181 VIGSSVVALELAQAFARLGSKVTVLARNTLFFRE--------DPAIGEAVTAAFRAEGIE 232
Query: 100 FVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 159
++ T S +G+ V L D ++V G PNT L L+ G+ V
Sbjct: 233 VLEHTQASQV-AHMDGEFVLTTTH--GELRADKLLVATGRTPNTR----SLALDAAGVTV 285
Query: 160 TGR--------LQSSNSSVYAVGDVAAFP 180
+ +++SN ++YA GD P
Sbjct: 286 NAQGAIVIDQGMRTSNPNIYAAGDCTDQP 314
>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 131 DMVVVGIGIRPNTSLFE----GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 181
D V+V G PN L G ++G I+V +++++ +YA+GD+ P+
Sbjct: 276 DAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 330
>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From
Masc Data
Length = 482
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 131 DMVVVGIGIRPNTSLFE----GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 181
D V+V G PN L G ++G I+V +++++ +YA+GD+ P+
Sbjct: 276 DAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 330
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 102
+ V+IG GYIG+E A+ + + ++ + L I + K +KF
Sbjct: 174 DMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKL-NIKF-N 231
Query: 103 GTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQ----LTLEKGG 156
V + + V + +DG++ + T+ VV+ G RP + EG L++ K G
Sbjct: 232 SPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRP--VIPEGAREIGLSISKTG 289
Query: 157 IKVTGRLQSSNSSVYAVGD 175
I V ++++ +V+A GD
Sbjct: 290 IVVDETMKTNIPNVFATGD 308
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 18/142 (12%)
Query: 46 VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP----KIASYYEEYYKSKGVKFV 101
VIG G IG+E + V ++ + EA F P +IA + +G+
Sbjct: 185 VIGAGVIGLELGS--VWARLGAEVTVLEA---LDKFLPAADEQIAKEALKVLTKQGLNIR 239
Query: 102 KGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPNTSLF---EGQLTL-EK 154
G +++ +V K V V D N + D ++V +G RP T+ + +TL E+
Sbjct: 240 LGARVTASEVKK--KQVTVTFTDANGEQKETFDKLIVAVGRRPVTTDLLAADSGVTLDER 297
Query: 155 GGIKVTGRLQSSNSSVYAVGDV 176
G I V ++S V+A+GDV
Sbjct: 298 GFIYVDDHCKTSVPGVFAIGDV 319
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGIKVTGRLQSSNSSVYAVGD 175
V+ DG D V++ IG P + + G T + G ++V ++S ++YA+GD
Sbjct: 288 VHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRTGKNGAVQVDAYSKTSVDNIYAIGD 347
Query: 176 V 176
V
Sbjct: 348 V 348
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGIKVTGRLQSSNSSVYAVGD 175
V+ DG D V++ IG P + + G T + G ++V ++S ++YA+GD
Sbjct: 288 VHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRTGKNGAVQVDAYSKTSVDNIYAIGD 347
Query: 176 V 176
V
Sbjct: 348 V 348
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 150 LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 183
L LEK IKV +S VYA GD+ +P KL
Sbjct: 262 LALEKNKIKVDTTXATSIPGVYACGDIVTYPGKL 295
>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
pdb|3D8X|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
Length = 326
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 46 VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 105
VIGGG E A L V M+ + H A K A K++ ++ + TV
Sbjct: 166 VIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAE------KNEKIEILYNTV 219
Query: 106 LSSFDVDSNGKVV-AVNLRDGNR-----LPTDMVVVGIGIRPNTSLFEGQL-TLEKGGIK 158
+ + +GK++ A+ +++ + LP + IG P T + GQ+ T E G IK
Sbjct: 220 --ALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIK 277
Query: 159 -VTGRLQSSNSSVYAVGDV 176
V G +S +A GDV
Sbjct: 278 TVPGSSLTSVPGFFAAGDV 296
>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
Length = 338
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 46 VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 105
VIGGG E A L V M+ + H A K A K++ ++ + TV
Sbjct: 178 VIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAE------KNEKIEILYNTV 231
Query: 106 LSSFDVDSNGKVV-AVNLRDGNR-----LPTDMVVVGIGIRPNTSLFEGQL-TLEKGGIK 158
+ + +GK++ A+ +++ + LP + IG P T + GQ+ T E G IK
Sbjct: 232 --ALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIK 289
Query: 159 -VTGRLQSSNSSVYAVGDV 176
V G +S +A GDV
Sbjct: 290 TVPGSSLTSVPGFFAAGDV 308
>pdb|2K9K|A Chain A, Molecular Characterization Of The Tonb2 Protein From
Vibrio Anguillarum
Length = 106
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 90 EEYYKSKGVKF-VKGTVLSSFDVDSNGKVVAVNLRDGN 126
E Y S+ +K V+G V SF +D+ GK V +N+ D N
Sbjct: 26 EPVYPSRALKRGVEGFVTLSFTIDTTGKAVDINVVDAN 63
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 36 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF 81
M S N +IGGG +G+ A L N I+V++ + AR+F
Sbjct: 1 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIF 46
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
Length = 398
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 36 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF 81
M S N +IGGG +G+ A L N I+V++ + AR+F
Sbjct: 21 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIF 66
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
Length = 398
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 36 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF 81
M S N +IGGG +G+ A L N I+V++ + AR+F
Sbjct: 21 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIF 66
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 36 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF 81
M S N +IGGG +G+ A L N I+V++ + AR+F
Sbjct: 21 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIF 66
>pdb|2QQP|A Chain A, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|C Chain C, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|E Chain E, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|G Chain G, Crystal Structure Of Authentic Providence Virus
Length = 556
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 244 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQ 285
Y + GTT N G VG F G +EE E + A RLQ
Sbjct: 509 YDGWEGTT------NAGSTVGQFAHTGAEEEDEVVQLANRLQ 544
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA---VNLRDGNRLPTDMVVVGIGIR 140
++A + +G+ F G ++ +G V V + L ++V++ G +
Sbjct: 240 EVAKQLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRK 299
Query: 141 PNTS---LFEGQLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFP 180
P+T L + + L+ +G +++ Q+S + VYA+GDV P
Sbjct: 300 PSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343
>pdb|3FTJ|A Chain A, Crystal Structure Of The Periplasmic Region Of Macb From
Actinobacillus Actinomycetemcomitans
Length = 226
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 90 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 121
E+Y+ +G+K +G +L+ DVD + +VV ++
Sbjct: 79 EQYFDVEGLKLKQGRLLTEDDVDQSNQVVVLD 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,744,565
Number of Sequences: 62578
Number of extensions: 471158
Number of successful extensions: 1657
Number of sequences better than 100.0: 139
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 168
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)