Query 018320
Match_columns 358
No_of_seqs 471 out of 3431
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 08:00:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09564 coenzyme A disulfide 100.0 4.5E-41 9.7E-46 333.4 29.7 304 6-316 114-440 (444)
2 PRK13512 coenzyme A disulfide 100.0 4.8E-41 1E-45 332.4 29.3 292 15-316 122-434 (438)
3 TIGR03385 CoA_CoA_reduc CoA-di 100.0 9.8E-41 2.1E-45 329.4 30.6 299 6-313 102-424 (427)
4 PRK09754 phenylpropionate diox 100.0 8.4E-39 1.8E-43 312.7 35.6 278 7-295 112-391 (396)
5 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1.1E-39 2.3E-44 319.7 26.0 276 6-308 146-449 (454)
6 KOG1336 Monodehydroascorbate/f 100.0 4.1E-39 8.9E-44 306.7 24.0 294 6-303 180-474 (478)
7 PRK14989 nitrite reductase sub 100.0 1E-36 2.3E-41 320.1 36.1 310 6-325 112-433 (847)
8 PRK07846 mycothione reductase; 100.0 4.4E-37 9.6E-42 305.0 27.0 276 6-308 139-441 (451)
9 PRK05249 soluble pyridine nucl 100.0 8E-37 1.7E-41 304.4 27.5 275 7-308 149-448 (461)
10 TIGR02374 nitri_red_nirB nitri 100.0 1.9E-35 4.2E-40 310.3 36.4 308 6-325 107-421 (785)
11 TIGR01423 trypano_reduc trypan 100.0 2.9E-36 6.2E-41 300.9 27.5 275 6-308 162-466 (486)
12 PRK06370 mercuric reductase; V 100.0 2.3E-36 5.1E-41 301.2 26.5 278 6-308 144-448 (463)
13 PRK07845 flavoprotein disulfid 100.0 3.1E-36 6.7E-41 300.3 27.0 276 6-308 150-451 (466)
14 TIGR03452 mycothione_red mycot 100.0 3.4E-36 7.5E-41 298.8 27.0 262 23-308 156-444 (452)
15 TIGR01421 gluta_reduc_1 glutat 100.0 5.4E-36 1.2E-40 297.2 28.1 251 40-308 165-445 (450)
16 PTZ00058 glutathione reductase 100.0 4.8E-36 1E-40 302.7 28.0 284 6-308 213-552 (561)
17 PRK06467 dihydrolipoamide dehy 100.0 3.7E-36 8.1E-41 300.0 26.9 249 40-308 173-450 (471)
18 PLN02507 glutathione reductase 100.0 9.7E-36 2.1E-40 298.5 28.9 274 6-308 178-478 (499)
19 TIGR02053 MerA mercuric reduct 100.0 5.2E-36 1.1E-40 298.7 26.4 267 6-295 139-434 (463)
20 TIGR01424 gluta_reduc_2 glutat 100.0 9.1E-36 2E-40 295.5 27.3 274 6-308 141-441 (446)
21 PRK08010 pyridine nucleotide-d 100.0 1.3E-35 2.9E-40 294.0 27.3 275 6-308 130-432 (441)
22 PRK06416 dihydrolipoamide dehy 100.0 1.2E-35 2.7E-40 295.9 26.7 272 12-308 149-447 (462)
23 PRK14694 putative mercuric red 100.0 1.4E-35 3.1E-40 295.8 27.0 274 6-308 151-448 (468)
24 PRK06912 acoL dihydrolipoamide 100.0 1.4E-35 2.9E-40 295.2 26.3 275 6-308 143-443 (458)
25 PTZ00153 lipoamide dehydrogena 100.0 2.2E-35 4.8E-40 301.7 28.2 277 7-308 286-645 (659)
26 COG1251 NirB NAD(P)H-nitrite r 100.0 9.2E-36 2E-40 295.5 24.2 310 6-327 112-425 (793)
27 PRK06116 glutathione reductase 100.0 2.4E-35 5.1E-40 293.0 27.1 275 6-308 142-445 (450)
28 PRK06115 dihydrolipoamide dehy 100.0 4.1E-35 8.8E-40 292.2 27.3 274 11-307 150-450 (466)
29 PRK14727 putative mercuric red 100.0 2.4E-35 5.2E-40 294.8 25.3 274 6-308 161-459 (479)
30 PRK07818 dihydrolipoamide dehy 100.0 4.2E-35 9E-40 292.4 26.5 250 40-308 171-451 (466)
31 PLN02546 glutathione reductase 100.0 5.2E-35 1.1E-39 295.3 26.0 274 6-308 227-527 (558)
32 TIGR01438 TGR thioredoxin and 100.0 7.2E-35 1.6E-39 291.2 25.7 275 6-308 154-463 (484)
33 PRK06327 dihydrolipoamide dehy 100.0 8.8E-35 1.9E-39 290.6 25.8 250 40-308 182-460 (475)
34 PRK13748 putative mercuric red 100.0 1.7E-34 3.7E-39 294.3 26.3 274 6-308 243-541 (561)
35 TIGR01350 lipoamide_DH dihydro 100.0 3.2E-34 6.8E-39 285.7 26.5 250 40-308 169-446 (461)
36 PRK07251 pyridine nucleotide-d 100.0 4.8E-34 1E-38 282.6 27.7 275 6-308 129-431 (438)
37 PRK06292 dihydrolipoamide dehy 100.0 4.2E-34 9E-39 284.8 26.0 250 40-308 168-445 (460)
38 PRK05976 dihydrolipoamide dehy 100.0 5.8E-34 1.3E-38 284.6 27.1 252 40-308 179-457 (472)
39 PTZ00052 thioredoxin reductase 100.0 2.8E-33 6.1E-38 280.8 28.5 249 40-308 181-473 (499)
40 PRK04965 NADH:flavorubredoxin 100.0 1.6E-32 3.5E-37 266.7 31.3 252 6-272 110-365 (377)
41 KOG1335 Dihydrolipoamide dehyd 100.0 3.7E-32 8E-37 251.4 16.8 243 40-296 210-482 (506)
42 KOG0405 Pyridine nucleotide-di 100.0 9.4E-32 2E-36 245.9 16.6 274 2-310 163-469 (478)
43 COG1252 Ndh NADH dehydrogenase 100.0 2.3E-27 5E-32 227.7 17.4 196 5-212 109-332 (405)
44 KOG4716 Thioredoxin reductase 100.0 1.1E-27 2.4E-32 218.6 13.6 279 5-305 171-484 (503)
45 PTZ00318 NADH dehydrogenase-li 99.9 2.9E-26 6.2E-31 226.1 21.0 192 6-211 124-347 (424)
46 COG0446 HcaD Uncharacterized N 99.9 5.7E-24 1.2E-28 207.7 29.5 281 14-303 111-415 (415)
47 TIGR03169 Nterm_to_SelD pyridi 99.9 1.4E-23 3E-28 203.0 21.4 192 6-211 106-310 (364)
48 TIGR01316 gltA glutamate synth 99.9 6.7E-24 1.5E-28 210.6 18.6 188 6-208 230-446 (449)
49 KOG1346 Programmed cell death 99.9 2.4E-23 5.2E-28 194.7 14.2 269 18-295 326-652 (659)
50 PRK10262 thioredoxin reductase 99.9 5.2E-23 1.1E-27 195.7 16.1 183 6-209 116-312 (321)
51 PRK12831 putative oxidoreducta 99.9 1.8E-22 3.9E-27 201.0 19.7 188 6-209 240-458 (464)
52 TIGR03140 AhpF alkyl hydropero 99.9 8.3E-22 1.8E-26 198.9 15.6 178 7-209 323-510 (515)
53 TIGR01292 TRX_reduct thioredox 99.9 4.2E-21 9.2E-26 179.9 19.0 177 6-208 111-297 (300)
54 PRK12770 putative glutamate sy 99.9 6.5E-21 1.4E-25 183.7 18.8 185 6-209 130-347 (352)
55 PRK12778 putative bifunctional 99.9 7.7E-21 1.7E-25 199.9 19.5 188 6-209 529-747 (752)
56 PRK11749 dihydropyrimidine deh 99.9 1.7E-20 3.7E-25 186.9 20.6 187 6-209 237-449 (457)
57 KOG2495 NADH-dehydrogenase (ub 99.9 1.3E-21 2.8E-26 184.2 11.8 191 5-208 168-393 (491)
58 PRK09853 putative selenate red 99.8 3.2E-20 6.9E-25 195.5 19.8 200 6-227 635-856 (1019)
59 TIGR03143 AhpF_homolog putativ 99.8 2.7E-20 5.9E-25 189.4 18.7 178 6-208 113-305 (555)
60 PRK15317 alkyl hydroperoxide r 99.8 2.6E-20 5.7E-25 188.1 16.9 179 6-209 321-509 (517)
61 PRK12810 gltD glutamate syntha 99.8 5.7E-20 1.2E-24 183.7 18.3 194 6-210 240-463 (471)
62 PRK12779 putative bifunctional 99.8 2E-19 4.4E-24 191.4 19.9 190 5-210 403-625 (944)
63 PRK13984 putative oxidoreducta 99.8 2.9E-19 6.2E-24 183.9 20.3 184 6-209 380-599 (604)
64 TIGR01318 gltD_gamma_fam gluta 99.8 5.8E-19 1.3E-23 176.0 20.7 186 8-209 240-463 (467)
65 PRK12814 putative NADPH-depend 99.8 2.9E-19 6.4E-24 184.8 17.9 184 7-209 291-498 (652)
66 PRK12775 putative trifunctiona 99.8 3.6E-19 7.9E-24 191.0 18.7 188 5-208 528-751 (1006)
67 COG0492 TrxB Thioredoxin reduc 99.8 4.1E-19 8.9E-24 166.7 16.0 163 18-208 129-297 (305)
68 PRK12769 putative oxidoreducta 99.8 1.8E-18 3.8E-23 179.4 22.2 189 5-209 423-649 (654)
69 TIGR01317 GOGAT_sm_gam glutama 99.8 1.1E-18 2.4E-23 174.7 18.5 194 6-209 240-476 (485)
70 TIGR03315 Se_ygfK putative sel 99.8 7.1E-18 1.5E-22 178.6 21.1 184 6-211 633-839 (1012)
71 PRK12809 putative oxidoreducta 99.8 6.3E-18 1.4E-22 174.7 18.0 188 6-209 407-632 (639)
72 PRK12771 putative glutamate sy 99.7 5.7E-16 1.2E-20 158.2 19.7 185 7-209 235-441 (564)
73 TIGR01372 soxA sarcosine oxida 99.7 4.6E-16 1E-20 167.7 19.9 173 6-208 285-468 (985)
74 PLN02852 ferredoxin-NADP+ redu 99.7 4.5E-16 9.8E-21 154.7 17.4 193 7-210 127-420 (491)
75 COG3634 AhpF Alkyl hydroperoxi 99.6 4.8E-16 1E-20 143.2 8.7 158 9-182 327-494 (520)
76 PF00070 Pyr_redox: Pyridine n 99.6 3.4E-15 7.5E-20 112.6 11.1 80 43-125 1-80 (80)
77 PF07992 Pyr_redox_2: Pyridine 99.6 4.5E-15 9.8E-20 131.0 8.8 137 43-180 1-200 (201)
78 KOG0404 Thioredoxin reductase 99.6 2E-14 4.3E-19 125.3 10.3 133 40-180 156-296 (322)
79 COG0493 GltD NADPH-dependent g 99.4 2.2E-12 4.8E-17 127.3 10.6 195 3-208 217-447 (457)
80 KOG2755 Oxidoreductase [Genera 99.3 8.3E-12 1.8E-16 111.4 10.0 169 6-180 103-323 (334)
81 PRK05329 anaerobic glycerol-3- 99.3 3.9E-11 8.5E-16 117.7 14.9 159 44-210 218-419 (422)
82 PLN02172 flavin-containing mon 99.2 1.2E-10 2.5E-15 116.1 13.5 171 2-211 170-352 (461)
83 TIGR01292 TRX_reduct thioredox 99.1 1.1E-09 2.5E-14 102.4 15.1 99 43-144 2-115 (300)
84 KOG0399 Glutamate synthase [Am 99.1 1.7E-10 3.6E-15 119.5 7.1 192 3-208 1879-2116(2142)
85 PRK06567 putative bifunctional 99.0 5.7E-09 1.2E-13 110.0 16.8 170 5-208 508-766 (1028)
86 PRK04176 ribulose-1,5-biphosph 99.0 2.8E-08 6.1E-13 91.6 17.1 166 41-210 25-253 (257)
87 COG2081 Predicted flavoprotein 99.0 6.7E-09 1.4E-13 98.8 13.0 100 42-143 4-171 (408)
88 TIGR00292 thiazole biosynthesi 98.9 1.3E-07 2.8E-12 87.0 18.5 166 41-209 21-251 (254)
89 TIGR03140 AhpF alkyl hydropero 98.9 3.8E-08 8.2E-13 99.7 15.7 102 40-143 211-325 (515)
90 PRK15317 alkyl hydroperoxide r 98.9 4.5E-08 9.7E-13 99.3 15.9 101 41-143 211-324 (517)
91 PF00743 FMO-like: Flavin-bind 98.9 1.2E-08 2.6E-13 103.3 10.3 184 3-211 148-396 (531)
92 PRK09754 phenylpropionate diox 98.8 2.6E-08 5.6E-13 97.7 11.5 99 41-143 3-114 (396)
93 PLN02172 flavin-containing mon 98.8 1.4E-07 3E-12 94.1 16.0 136 40-178 9-215 (461)
94 PF13738 Pyr_redox_3: Pyridine 98.8 4.6E-08 9.9E-13 86.4 11.0 98 45-144 1-143 (203)
95 PF03486 HI0933_like: HI0933-l 98.8 3.5E-08 7.6E-13 96.7 11.0 99 43-142 2-167 (409)
96 PRK06847 hypothetical protein; 98.8 8.5E-08 1.9E-12 92.9 13.4 102 40-143 3-165 (375)
97 PRK09564 coenzyme A disulfide 98.8 4.4E-08 9.6E-13 97.3 11.4 101 42-144 1-118 (444)
98 PF02852 Pyr_redox_dim: Pyridi 98.7 1.3E-08 2.9E-13 81.4 3.4 82 223-308 3-105 (110)
99 PRK07236 hypothetical protein; 98.7 1.7E-07 3.6E-12 91.5 11.7 102 40-143 5-156 (386)
100 COG3486 IucD Lysine/ornithine 98.7 1.5E-06 3.3E-11 82.9 17.3 194 3-211 156-414 (436)
101 PRK10262 thioredoxin reductase 98.6 8.8E-07 1.9E-11 84.2 15.3 101 40-144 5-120 (321)
102 TIGR03169 Nterm_to_SelD pyridi 98.6 1.4E-07 3E-12 91.2 9.9 97 43-144 1-110 (364)
103 PRK12770 putative glutamate sy 98.6 1.2E-07 2.6E-12 91.5 9.1 103 40-142 17-132 (352)
104 TIGR02032 GG-red-SF geranylger 98.6 5.8E-07 1.3E-11 83.6 12.7 97 43-141 2-148 (295)
105 PTZ00318 NADH dehydrogenase-li 98.6 2.6E-07 5.6E-12 91.4 10.7 102 40-144 9-128 (424)
106 PRK12779 putative bifunctional 98.6 1.7E-07 3.8E-12 100.7 10.2 93 40-142 305-406 (944)
107 TIGR02374 nitri_red_nirB nitri 98.6 1.8E-07 3.9E-12 99.3 9.8 98 44-145 1-112 (785)
108 PRK09853 putative selenate red 98.6 3.6E-07 7.7E-12 97.6 11.2 91 40-142 538-636 (1019)
109 PRK11749 dihydropyrimidine deh 98.6 1.8E-07 4E-12 93.4 8.6 90 40-140 139-236 (457)
110 PRK14989 nitrite reductase sub 98.6 3E-07 6.4E-12 98.0 10.5 100 41-144 3-116 (847)
111 COG0492 TrxB Thioredoxin reduc 98.6 1.7E-06 3.7E-11 81.6 14.5 99 42-144 4-118 (305)
112 COG1252 Ndh NADH dehydrogenase 98.6 3.5E-07 7.5E-12 88.8 9.9 99 41-144 3-114 (405)
113 PF13434 K_oxygenase: L-lysine 98.5 2.5E-07 5.5E-12 88.7 8.3 117 18-140 172-340 (341)
114 PRK06834 hypothetical protein; 98.5 1.4E-06 2.9E-11 87.8 13.7 100 42-143 4-158 (488)
115 TIGR03143 AhpF_homolog putativ 98.5 1.8E-06 3.9E-11 88.3 14.8 98 42-144 5-117 (555)
116 PRK13512 coenzyme A disulfide 98.5 7.3E-07 1.6E-11 88.6 11.4 101 42-144 2-120 (438)
117 PRK08773 2-octaprenyl-3-methyl 98.5 1.3E-06 2.9E-11 85.3 13.1 101 41-143 6-171 (392)
118 PRK07045 putative monooxygenas 98.5 1.6E-06 3.4E-11 84.7 13.4 102 42-143 6-167 (388)
119 PRK08163 salicylate hydroxylas 98.5 1.3E-06 2.8E-11 85.4 12.7 101 41-143 4-168 (396)
120 TIGR01424 gluta_reduc_2 glutat 98.5 9.8E-07 2.1E-11 87.9 11.7 96 42-144 3-145 (446)
121 PF01134 GIDA: Glucose inhibit 98.5 8.1E-07 1.7E-11 85.9 10.5 95 43-139 1-150 (392)
122 TIGR01316 gltA glutamate synth 98.5 3.5E-07 7.6E-12 91.2 8.3 93 40-143 132-233 (449)
123 PLN02463 lycopene beta cyclase 98.5 1.2E-06 2.7E-11 87.0 12.1 98 42-142 29-170 (447)
124 PRK07588 hypothetical protein; 98.5 2E-06 4.3E-11 84.0 13.0 98 43-143 2-160 (391)
125 PRK04965 NADH:flavorubredoxin 98.5 1.4E-06 3E-11 84.8 11.8 98 42-144 3-114 (377)
126 PRK08244 hypothetical protein; 98.5 1.9E-06 4E-11 87.0 13.1 102 42-143 3-161 (493)
127 PF01266 DAO: FAD dependent ox 98.5 1.2E-06 2.7E-11 83.4 11.1 55 86-142 150-204 (358)
128 KOG3851 Sulfide:quinone oxidor 98.5 3.8E-06 8.3E-11 77.7 13.4 192 6-208 144-357 (446)
129 PRK12831 putative oxidoreducta 98.5 4.8E-07 1E-11 90.5 8.4 94 40-143 139-243 (464)
130 PRK05868 hypothetical protein; 98.5 1.8E-06 4E-11 83.9 12.2 100 42-143 2-162 (372)
131 PRK05714 2-octaprenyl-3-methyl 98.4 2.3E-06 5E-11 84.0 12.8 100 42-143 3-170 (405)
132 PLN02661 Putative thiazole syn 98.4 1E-05 2.2E-10 77.2 16.5 167 40-210 91-326 (357)
133 PF00743 FMO-like: Flavin-bind 98.4 3.9E-06 8.4E-11 85.1 14.3 136 42-179 2-195 (531)
134 COG0654 UbiH 2-polyprenyl-6-me 98.4 3E-06 6.4E-11 82.8 12.9 101 41-143 2-164 (387)
135 PRK07333 2-octaprenyl-6-methox 98.4 2.8E-06 6.1E-11 83.1 12.8 99 43-143 3-169 (403)
136 TIGR01984 UbiH 2-polyprenyl-6- 98.4 3.2E-06 6.8E-11 82.2 13.0 98 43-142 1-163 (382)
137 PRK06184 hypothetical protein; 98.4 2.8E-06 6E-11 85.9 13.0 99 42-142 4-169 (502)
138 COG1635 THI4 Ribulose 1,5-bisp 98.4 7.2E-06 1.6E-10 72.3 13.5 165 41-209 30-257 (262)
139 TIGR01318 gltD_gamma_fam gluta 98.4 8.5E-07 1.8E-11 88.8 8.8 92 40-142 140-239 (467)
140 PRK07608 ubiquinone biosynthes 98.4 4E-06 8.6E-11 81.7 13.0 99 42-143 6-169 (388)
141 PRK10157 putative oxidoreducta 98.4 4.8E-06 1E-10 82.5 13.4 98 42-141 6-164 (428)
142 PRK09126 hypothetical protein; 98.4 5E-06 1.1E-10 81.1 13.2 100 42-143 4-169 (392)
143 TIGR01988 Ubi-OHases Ubiquinon 98.4 4.8E-06 1E-10 80.8 13.0 98 43-142 1-164 (385)
144 PRK06116 glutathione reductase 98.4 1.9E-06 4.2E-11 85.8 10.4 95 42-145 5-147 (450)
145 PF01494 FAD_binding_3: FAD bi 98.4 2.8E-06 6E-11 80.9 11.0 102 43-144 3-175 (356)
146 PRK12778 putative bifunctional 98.4 1.1E-06 2.5E-11 93.0 8.9 94 40-143 430-532 (752)
147 PRK07251 pyridine nucleotide-d 98.4 3.4E-06 7.4E-11 83.8 11.8 98 42-144 4-133 (438)
148 PLN02852 ferredoxin-NADP+ redu 98.4 1.3E-06 2.8E-11 87.4 8.8 92 40-142 25-127 (491)
149 PRK06753 hypothetical protein; 98.4 2.8E-06 6E-11 82.3 10.8 99 43-143 2-154 (373)
150 TIGR01317 GOGAT_sm_gam glutama 98.4 1.2E-06 2.7E-11 88.0 8.6 90 40-140 142-239 (485)
151 TIGR03315 Se_ygfK putative sel 98.3 1.7E-06 3.8E-11 92.8 9.8 90 41-142 537-634 (1012)
152 PRK07364 2-octaprenyl-6-methox 98.3 6.7E-06 1.5E-10 80.8 13.2 101 41-143 18-183 (415)
153 PRK08013 oxidoreductase; Provi 98.3 6.4E-06 1.4E-10 80.8 12.7 100 42-143 4-170 (400)
154 PRK08849 2-octaprenyl-3-methyl 98.3 5.7E-06 1.2E-10 80.7 12.3 101 42-144 4-170 (384)
155 COG2072 TrkA Predicted flavopr 98.3 1.4E-05 3E-10 79.5 15.0 138 41-179 8-187 (443)
156 PRK07845 flavoprotein disulfid 98.3 8.8E-06 1.9E-10 81.5 13.6 100 42-143 2-153 (466)
157 PRK07190 hypothetical protein; 98.3 7.6E-06 1.7E-10 82.4 12.9 99 42-142 6-166 (487)
158 PRK12775 putative trifunctiona 98.3 1.8E-06 3.8E-11 93.8 8.8 94 40-143 429-532 (1006)
159 PRK08010 pyridine nucleotide-d 98.3 6.1E-06 1.3E-10 82.1 11.9 98 42-144 4-134 (441)
160 PRK05249 soluble pyridine nucl 98.3 6.7E-06 1.5E-10 82.2 12.3 98 42-144 6-152 (461)
161 PRK05976 dihydrolipoamide dehy 98.3 7E-06 1.5E-10 82.4 12.2 101 41-143 4-156 (472)
162 PRK12810 gltD glutamate syntha 98.3 2.1E-06 4.7E-11 86.1 8.3 90 40-140 142-239 (471)
163 PRK08020 ubiF 2-octaprenyl-3-m 98.3 9E-06 1.9E-10 79.3 12.4 101 41-143 5-171 (391)
164 TIGR01790 carotene-cycl lycope 98.3 1E-05 2.2E-10 78.8 12.6 97 43-141 1-141 (388)
165 PRK12809 putative oxidoreducta 98.3 2.4E-06 5.3E-11 88.8 8.5 92 40-142 309-408 (639)
166 PRK06617 2-octaprenyl-6-methox 98.3 9.4E-06 2E-10 78.9 12.1 98 43-143 3-162 (374)
167 PRK01438 murD UDP-N-acetylmura 98.3 4.1E-06 8.8E-11 84.2 9.8 82 40-147 15-96 (480)
168 PRK06183 mhpA 3-(3-hydroxyphen 98.3 1.3E-05 2.8E-10 81.8 13.6 101 41-143 10-176 (538)
169 PRK08132 FAD-dependent oxidore 98.3 1.2E-05 2.6E-10 82.2 13.4 103 41-143 23-187 (547)
170 PLN02697 lycopene epsilon cycl 98.3 1E-05 2.2E-10 81.9 12.5 98 42-141 109-248 (529)
171 PRK06467 dihydrolipoamide dehy 98.2 1.1E-05 2.4E-10 80.9 12.6 96 42-142 5-149 (471)
172 PRK10015 oxidoreductase; Provi 98.2 1.4E-05 3E-10 79.3 12.9 98 42-141 6-164 (429)
173 PRK08850 2-octaprenyl-6-methox 98.2 1.4E-05 3E-10 78.5 12.9 101 41-143 4-170 (405)
174 PRK06475 salicylate hydroxylas 98.2 1.4E-05 2.9E-10 78.5 12.7 100 42-143 3-169 (400)
175 PRK06416 dihydrolipoamide dehy 98.2 1.1E-05 2.4E-10 80.7 12.1 96 42-143 5-148 (462)
176 COG0644 FixC Dehydrogenases (f 98.2 1.4E-05 3.1E-10 78.3 12.3 100 42-142 4-153 (396)
177 TIGR01421 gluta_reduc_1 glutat 98.2 1.1E-05 2.3E-10 80.6 11.3 94 42-144 3-144 (450)
178 PRK07494 2-octaprenyl-6-methox 98.2 2.2E-05 4.7E-10 76.6 13.0 100 41-143 7-169 (388)
179 PRK05192 tRNA uridine 5-carbox 98.2 1.6E-05 3.4E-10 81.2 12.2 96 42-139 5-155 (618)
180 KOG1399 Flavin-containing mono 98.2 3.5E-05 7.5E-10 76.3 14.3 138 41-179 6-198 (448)
181 PTZ00188 adrenodoxin reductase 98.2 7.4E-06 1.6E-10 81.3 9.3 92 40-142 38-139 (506)
182 PRK12769 putative oxidoreducta 98.2 5.4E-06 1.2E-10 86.5 8.5 91 40-141 326-424 (654)
183 TIGR01372 soxA sarcosine oxida 98.2 2.1E-05 4.6E-10 85.7 13.2 102 41-144 163-289 (985)
184 TIGR00137 gid_trmFO tRNA:m(5)U 98.2 7.9E-06 1.7E-10 80.2 8.9 36 43-78 2-37 (433)
185 TIGR03219 salicylate_mono sali 98.2 1.2E-05 2.7E-10 79.1 10.4 98 43-142 2-160 (414)
186 PRK12814 putative NADPH-depend 98.1 6.4E-06 1.4E-10 85.9 8.7 92 40-142 192-291 (652)
187 PRK06115 dihydrolipoamide dehy 98.1 2E-05 4.3E-10 79.0 11.7 96 42-142 4-149 (466)
188 PRK06185 hypothetical protein; 98.1 4E-05 8.6E-10 75.2 13.4 101 41-142 6-170 (407)
189 TIGR00275 flavoprotein, HI0933 98.1 2.5E-05 5.3E-10 76.8 11.7 94 45-141 1-160 (400)
190 PRK08243 4-hydroxybenzoate 3-m 98.1 4.2E-05 9E-10 74.8 12.9 100 42-143 3-165 (392)
191 PRK05732 2-octaprenyl-6-methox 98.1 3.8E-05 8.3E-10 74.9 12.3 99 42-142 4-170 (395)
192 PRK06370 mercuric reductase; V 98.1 1.5E-05 3.2E-10 79.8 9.5 94 42-144 6-148 (463)
193 PF12831 FAD_oxidored: FAD dep 98.1 3.5E-06 7.6E-11 83.5 4.8 96 43-139 1-148 (428)
194 TIGR01989 COQ6 Ubiquinone bios 98.1 4.7E-05 1E-09 75.7 12.7 102 43-144 2-186 (437)
195 TIGR02053 MerA mercuric reduct 98.1 3E-05 6.4E-10 77.6 11.0 94 43-144 2-143 (463)
196 PRK11728 hydroxyglutarate oxid 98.0 5.2E-05 1.1E-09 74.2 12.4 50 90-142 156-205 (393)
197 PRK06481 fumarate reductase fl 98.0 7.4E-05 1.6E-09 75.7 13.8 106 42-148 62-259 (506)
198 COG0579 Predicted dehydrogenas 98.0 5.8E-05 1.2E-09 74.0 12.4 56 86-142 156-212 (429)
199 TIGR01813 flavo_cyto_c flavocy 98.0 7.5E-05 1.6E-09 74.2 13.6 105 43-147 1-199 (439)
200 PF14759 Reductase_C: Reductas 98.0 0.00011 2.3E-09 55.9 10.9 73 221-295 1-75 (85)
201 TIGR00136 gidA glucose-inhibit 98.0 7E-05 1.5E-09 76.4 12.7 98 43-141 2-154 (617)
202 TIGR01789 lycopene_cycl lycope 98.0 2.9E-05 6.2E-10 75.5 9.5 94 43-142 1-139 (370)
203 KOG1336 Monodehydroascorbate/f 98.0 2.3E-05 5E-10 76.3 8.6 99 41-143 74-183 (478)
204 PRK07538 hypothetical protein; 98.0 5.9E-05 1.3E-09 74.3 11.8 101 43-143 2-167 (413)
205 TIGR03378 glycerol3P_GlpB glyc 98.0 0.00019 4.1E-09 70.3 15.0 145 55-208 237-419 (419)
206 PRK06996 hypothetical protein; 98.0 5.9E-05 1.3E-09 74.0 11.7 98 41-140 11-173 (398)
207 PRK14694 putative mercuric red 98.0 6.8E-05 1.5E-09 75.2 12.3 100 41-145 6-156 (468)
208 PRK13984 putative oxidoreducta 98.0 1.8E-05 3.9E-10 81.9 8.3 91 40-141 282-380 (604)
209 PF04820 Trp_halogenase: Trypt 98.0 6.6E-05 1.4E-09 74.9 12.0 57 85-142 156-212 (454)
210 PRK11445 putative oxidoreducta 98.0 0.00011 2.3E-09 71.0 13.0 98 43-143 3-159 (351)
211 PRK06126 hypothetical protein; 98.0 9.2E-05 2E-09 75.7 13.1 103 41-143 7-190 (545)
212 PRK12771 putative glutamate sy 98.0 2.2E-05 4.7E-10 80.6 8.5 91 40-142 136-235 (564)
213 COG3634 AhpF Alkyl hydroperoxi 98.0 4.2E-05 9.1E-10 71.7 9.3 139 40-178 210-365 (520)
214 PF01946 Thi4: Thi4 family; PD 98.0 0.0001 2.3E-09 65.2 11.3 103 41-143 17-167 (230)
215 PLN02546 glutathione reductase 98.0 5.6E-05 1.2E-09 77.3 11.1 94 43-144 81-231 (558)
216 PRK13748 putative mercuric red 98.0 0.00012 2.6E-09 75.1 13.7 97 42-144 99-247 (561)
217 PRK09897 hypothetical protein; 98.0 0.00012 2.5E-09 74.4 13.3 99 42-142 2-167 (534)
218 TIGR01377 soxA_mon sarcosine o 98.0 0.00012 2.5E-09 71.1 12.9 31 43-73 2-32 (380)
219 KOG1800 Ferredoxin/adrenodoxin 98.0 4.1E-05 8.8E-10 72.6 9.1 72 126-210 327-405 (468)
220 PTZ00058 glutathione reductase 98.0 9.7E-05 2.1E-09 75.5 12.7 31 43-73 50-80 (561)
221 TIGR01350 lipoamide_DH dihydro 97.9 6.6E-05 1.4E-09 75.0 11.3 95 43-143 3-145 (461)
222 TIGR02023 BchP-ChlP geranylger 97.9 0.0001 2.3E-09 71.9 12.3 98 43-143 2-157 (388)
223 PRK06327 dihydrolipoamide dehy 97.9 0.00012 2.5E-09 73.6 13.0 31 42-72 5-35 (475)
224 PF05834 Lycopene_cycl: Lycope 97.9 8.8E-05 1.9E-09 72.2 11.5 97 43-142 1-143 (374)
225 TIGR02360 pbenz_hydroxyl 4-hyd 97.9 0.00011 2.4E-09 71.9 12.2 100 42-143 3-165 (390)
226 PRK06912 acoL dihydrolipoamide 97.9 0.00015 3.3E-09 72.5 13.2 96 43-143 2-146 (458)
227 PLN02507 glutathione reductase 97.9 0.00013 2.8E-09 73.8 12.5 98 42-144 26-182 (499)
228 PRK11259 solA N-methyltryptoph 97.9 0.00018 4E-09 69.6 12.8 33 42-74 4-36 (376)
229 PRK06567 putative bifunctional 97.9 2.9E-05 6.2E-10 82.6 7.5 35 40-74 382-416 (1028)
230 PF13738 Pyr_redox_3: Pyridine 97.9 1.2E-05 2.5E-10 70.9 3.8 66 2-75 135-201 (203)
231 PRK12409 D-amino acid dehydrog 97.9 0.00021 4.6E-09 70.2 13.0 33 42-74 2-34 (410)
232 PRK07818 dihydrolipoamide dehy 97.8 0.00014 2.9E-09 73.0 10.9 32 42-73 5-36 (466)
233 KOG0399 Glutamate synthase [Am 97.8 4.9E-05 1.1E-09 80.2 7.5 90 40-140 1784-1881(2142)
234 COG0493 GltD NADPH-dependent g 97.8 3.4E-05 7.5E-10 76.6 6.0 90 40-140 122-219 (457)
235 TIGR02028 ChlP geranylgeranyl 97.8 0.00033 7.2E-09 68.8 12.8 100 43-143 2-162 (398)
236 PRK01747 mnmC bifunctional tRN 97.8 0.00019 4.2E-09 75.1 11.8 33 42-74 261-293 (662)
237 COG1148 HdrA Heterodisulfide r 97.8 5.6E-05 1.2E-09 73.7 6.8 71 41-111 124-206 (622)
238 PRK07121 hypothetical protein; 97.8 0.00038 8.3E-09 70.3 13.1 59 89-147 183-246 (492)
239 PRK14727 putative mercuric red 97.7 0.00033 7.1E-09 70.5 12.3 100 41-145 16-166 (479)
240 PF00890 FAD_binding_2: FAD bi 97.7 0.00036 7.9E-09 68.7 12.4 57 85-142 143-204 (417)
241 PRK06292 dihydrolipoamide dehy 97.7 0.00019 4.1E-09 71.7 10.3 31 42-72 4-34 (460)
242 PRK00711 D-amino acid dehydrog 97.7 0.00047 1E-08 67.8 12.7 32 43-74 2-33 (416)
243 PRK11101 glpA sn-glycerol-3-ph 97.7 0.00042 9.2E-09 70.9 12.6 32 42-73 7-38 (546)
244 PLN02927 antheraxanthin epoxid 97.7 0.00032 7E-09 72.7 11.7 35 40-74 80-114 (668)
245 PRK08274 tricarballylate dehyd 97.7 0.00052 1.1E-08 68.7 13.0 106 42-148 5-200 (466)
246 TIGR01373 soxB sarcosine oxida 97.7 0.00076 1.7E-08 66.2 13.7 50 90-140 190-239 (407)
247 PLN00093 geranylgeranyl diphos 97.6 0.00067 1.5E-08 67.7 12.8 101 41-143 39-201 (450)
248 TIGR01438 TGR thioredoxin and 97.6 0.00065 1.4E-08 68.5 12.5 97 43-144 4-158 (484)
249 COG1251 NirB NAD(P)H-nitrite r 97.6 0.00025 5.5E-09 72.5 9.4 103 41-147 3-119 (793)
250 KOG2495 NADH-dehydrogenase (ub 97.6 0.00032 6.9E-09 67.6 9.4 103 40-144 54-173 (491)
251 PLN02985 squalene monooxygenas 97.6 0.00058 1.3E-08 69.3 12.0 34 41-74 43-76 (514)
252 TIGR03364 HpnW_proposed FAD de 97.6 0.00072 1.6E-08 65.3 12.0 31 43-73 2-32 (365)
253 PRK08401 L-aspartate oxidase; 97.6 0.00088 1.9E-08 67.2 12.9 32 42-73 2-33 (466)
254 PF13454 NAD_binding_9: FAD-NA 97.6 0.00063 1.4E-08 57.8 10.1 93 45-139 1-155 (156)
255 COG3380 Predicted NAD/FAD-depe 97.6 0.00031 6.8E-09 63.9 8.5 93 43-139 3-158 (331)
256 PTZ00052 thioredoxin reductase 97.6 0.00024 5.2E-09 71.9 8.7 31 42-72 6-36 (499)
257 KOG2820 FAD-dependent oxidored 97.5 0.001 2.2E-08 62.4 11.4 53 87-139 157-210 (399)
258 TIGR03329 Phn_aa_oxid putative 97.5 0.00097 2.1E-08 66.8 11.8 32 42-73 25-58 (460)
259 PLN02464 glycerol-3-phosphate 97.5 0.0013 2.9E-08 68.3 13.2 33 41-73 71-103 (627)
260 PRK08275 putative oxidoreducta 97.5 0.0016 3.5E-08 66.7 13.3 100 42-141 10-200 (554)
261 PRK07804 L-aspartate oxidase; 97.5 0.0014 3E-08 67.0 12.6 33 42-74 17-49 (541)
262 PRK08294 phenol 2-monooxygenas 97.5 0.0015 3.3E-08 68.0 13.0 103 41-143 32-212 (634)
263 TIGR01423 trypano_reduc trypan 97.5 0.0012 2.7E-08 66.4 11.9 31 42-72 4-35 (486)
264 COG1249 Lpd Pyruvate/2-oxoglut 97.5 0.0012 2.7E-08 65.6 11.6 98 42-144 5-150 (454)
265 KOG0404 Thioredoxin reductase 97.4 0.0011 2.4E-08 58.8 9.7 99 41-143 8-126 (322)
266 TIGR01812 sdhA_frdA_Gneg succi 97.4 0.0016 3.5E-08 67.0 12.7 32 43-74 1-32 (566)
267 TIGR02485 CobZ_N-term precorri 97.4 0.0019 4.1E-08 64.1 12.4 60 89-148 129-191 (432)
268 PF13450 NAD_binding_8: NAD(P) 97.4 0.00024 5.2E-09 51.5 4.5 33 46-78 1-33 (68)
269 PRK06175 L-aspartate oxidase; 97.4 0.0022 4.7E-08 63.7 12.7 52 88-140 133-188 (433)
270 COG3075 GlpB Anaerobic glycero 97.4 0.001 2.2E-08 62.2 9.1 122 84-210 259-416 (421)
271 PRK13977 myosin-cross-reactive 97.4 0.0024 5.3E-08 64.8 12.6 53 89-141 232-293 (576)
272 TIGR01811 sdhA_Bsu succinate d 97.4 0.0024 5.1E-08 66.2 12.7 31 44-74 1-31 (603)
273 COG0445 GidA Flavin-dependent 97.4 0.00056 1.2E-08 68.0 7.6 96 42-139 5-156 (621)
274 PRK12266 glpD glycerol-3-phosp 97.3 0.0019 4E-08 65.6 11.7 33 41-73 6-38 (508)
275 COG4529 Uncharacterized protei 97.3 0.0018 4E-08 63.6 11.1 101 42-143 2-166 (474)
276 PRK07573 sdhA succinate dehydr 97.3 0.0028 6.1E-08 66.1 13.1 32 42-73 36-67 (640)
277 COG2072 TrkA Predicted flavopr 97.3 0.00024 5.3E-09 70.7 5.0 68 2-76 141-210 (443)
278 PRK06263 sdhA succinate dehydr 97.3 0.0025 5.5E-08 65.2 12.5 32 42-74 8-39 (543)
279 PRK07846 mycothione reductase; 97.3 0.0013 2.8E-08 65.7 10.1 93 43-145 3-144 (451)
280 PRK06854 adenylylsulfate reduc 97.3 0.0032 6.9E-08 65.3 13.2 33 42-74 12-46 (608)
281 TIGR00551 nadB L-aspartate oxi 97.3 0.0025 5.5E-08 64.3 12.2 97 43-141 4-189 (488)
282 COG2509 Uncharacterized FAD-de 97.3 0.0023 4.9E-08 62.4 11.1 84 60-145 150-234 (486)
283 PTZ00188 adrenodoxin reductase 97.3 0.0032 7E-08 62.8 12.5 83 96-185 324-422 (506)
284 PRK09078 sdhA succinate dehydr 97.3 0.003 6.4E-08 65.4 12.8 32 42-73 13-44 (598)
285 PRK07843 3-ketosteroid-delta-1 97.3 0.00044 9.6E-09 70.9 6.6 107 40-148 159-277 (557)
286 PTZ00383 malate:quinone oxidor 97.3 0.0028 6.1E-08 63.9 12.1 51 89-141 217-273 (497)
287 PRK13369 glycerol-3-phosphate 97.3 0.0028 6.1E-08 64.2 12.2 32 42-73 7-38 (502)
288 PRK06452 sdhA succinate dehydr 97.3 0.003 6.5E-08 64.9 12.4 32 42-73 6-37 (566)
289 PRK08255 salicylyl-CoA 5-hydro 97.3 0.00077 1.7E-08 71.7 8.1 33 43-75 2-36 (765)
290 PTZ00139 Succinate dehydrogena 97.2 0.004 8.7E-08 64.7 13.0 33 42-74 30-62 (617)
291 PRK05945 sdhA succinate dehydr 97.2 0.0045 9.7E-08 63.8 12.8 51 89-140 141-196 (575)
292 PRK12835 3-ketosteroid-delta-1 97.2 0.005 1.1E-07 63.6 12.9 56 93-148 223-283 (584)
293 PRK08958 sdhA succinate dehydr 97.2 0.0051 1.1E-07 63.5 12.8 31 43-73 9-39 (588)
294 KOG2614 Kynurenine 3-monooxyge 97.2 0.0021 4.5E-08 62.0 9.1 35 42-76 3-37 (420)
295 PRK12843 putative FAD-binding 97.2 0.0072 1.6E-07 62.3 13.7 58 89-147 227-289 (578)
296 PTZ00367 squalene epoxidase; P 97.1 0.0034 7.3E-08 64.4 11.1 33 42-74 34-66 (567)
297 PLN00128 Succinate dehydrogena 97.1 0.0053 1.1E-07 63.9 12.3 32 43-74 52-83 (635)
298 PRK07057 sdhA succinate dehydr 97.1 0.0074 1.6E-07 62.4 13.3 32 42-73 13-44 (591)
299 PRK12842 putative succinate de 97.1 0.00068 1.5E-08 69.8 5.7 103 40-144 156-278 (574)
300 PRK05335 tRNA (uracil-5-)-meth 97.1 0.00063 1.4E-08 66.7 5.2 35 42-76 3-37 (436)
301 PRK14106 murD UDP-N-acetylmura 97.1 0.0026 5.6E-08 63.4 9.4 83 40-147 4-86 (450)
302 PRK07803 sdhA succinate dehydr 97.1 0.0059 1.3E-07 63.5 12.2 33 42-74 9-41 (626)
303 PTZ00153 lipoamide dehydrogena 97.1 0.0041 8.9E-08 64.8 10.9 31 43-73 118-148 (659)
304 PRK06069 sdhA succinate dehydr 97.0 0.0055 1.2E-07 63.2 11.6 33 42-74 6-41 (577)
305 PRK08205 sdhA succinate dehydr 97.0 0.0096 2.1E-07 61.5 13.2 54 88-141 145-206 (583)
306 TIGR03452 mycothione_red mycot 97.0 0.0017 3.7E-08 64.9 7.1 93 42-144 3-146 (452)
307 KOG2311 NAD/FAD-utilizing prot 97.0 0.0036 7.7E-08 61.3 8.8 33 41-73 28-60 (679)
308 PRK08641 sdhA succinate dehydr 96.9 0.01 2.2E-07 61.4 12.4 33 41-73 3-35 (589)
309 PRK07395 L-aspartate oxidase; 96.9 0.0056 1.2E-07 62.7 10.5 32 42-74 10-41 (553)
310 PRK08071 L-aspartate oxidase; 96.9 0.0063 1.4E-07 61.8 10.5 32 42-74 4-35 (510)
311 KOG2755 Oxidoreductase [Genera 96.9 0.00094 2E-08 60.5 3.6 93 43-144 1-107 (334)
312 PRK06134 putative FAD-binding 96.9 0.015 3.2E-07 60.1 12.8 34 41-74 12-45 (581)
313 PTZ00306 NADH-dependent fumara 96.8 0.012 2.7E-07 65.4 12.9 35 41-75 409-443 (1167)
314 KOG2404 Fumarate reductase, fl 96.8 0.0083 1.8E-07 56.1 9.5 45 97-142 159-207 (477)
315 PRK08626 fumarate reductase fl 96.8 0.014 3.1E-07 61.0 12.5 33 42-74 6-38 (657)
316 KOG1399 Flavin-containing mono 96.8 0.0022 4.8E-08 63.6 6.1 90 40-148 185-276 (448)
317 KOG0029 Amine oxidase [Seconda 96.8 0.0017 3.6E-08 65.5 5.3 40 40-79 14-53 (501)
318 PRK05320 rhodanese superfamily 96.8 0.0015 3.4E-08 60.1 4.5 73 265-341 46-123 (257)
319 PRK12834 putative FAD-binding 96.8 0.018 3.9E-07 59.0 12.7 33 42-74 5-37 (549)
320 KOG2415 Electron transfer flav 96.7 0.0098 2.1E-07 57.5 9.4 103 41-143 76-258 (621)
321 KOG3851 Sulfide:quinone oxidor 96.7 0.00081 1.8E-08 62.6 1.9 104 41-149 39-153 (446)
322 PRK09231 fumarate reductase fl 96.7 0.025 5.4E-07 58.4 12.8 33 42-74 5-39 (582)
323 PRK11883 protoporphyrinogen ox 96.7 0.0023 5E-08 63.4 5.1 36 42-77 1-38 (451)
324 PRK12844 3-ketosteroid-delta-1 96.6 0.033 7.1E-07 57.2 13.4 32 42-73 7-38 (557)
325 PLN02815 L-aspartate oxidase 96.6 0.018 3.9E-07 59.5 11.4 32 42-74 30-61 (594)
326 PRK07512 L-aspartate oxidase; 96.6 0.013 2.7E-07 59.6 10.1 33 41-75 9-41 (513)
327 COG1148 HdrA Heterodisulfide r 96.6 0.014 3.1E-07 57.4 9.8 112 64-181 400-525 (622)
328 COG0446 HcaD Uncharacterized N 96.6 0.011 2.5E-07 57.3 9.5 96 44-144 1-109 (415)
329 PRK12839 hypothetical protein; 96.6 0.026 5.6E-07 58.1 12.4 32 42-73 9-40 (572)
330 PRK12845 3-ketosteroid-delta-1 96.6 0.025 5.5E-07 58.1 12.1 32 42-74 17-48 (564)
331 TIGR01176 fum_red_Fp fumarate 96.6 0.031 6.6E-07 57.7 12.8 33 42-74 4-38 (580)
332 PRK07233 hypothetical protein; 96.5 0.0033 7.2E-08 61.9 5.3 36 43-78 1-36 (434)
333 TIGR02061 aprA adenosine phosp 96.5 0.043 9.3E-07 56.9 13.4 32 43-74 1-36 (614)
334 PLN02268 probable polyamine ox 96.5 0.0036 7.8E-08 62.0 5.2 38 42-79 1-38 (435)
335 COG3349 Uncharacterized conser 96.5 0.0036 7.9E-08 62.0 4.9 38 42-79 1-38 (485)
336 TIGR03385 CoA_CoA_reduc CoA-di 96.5 0.012 2.6E-07 58.2 8.7 87 56-144 2-106 (427)
337 PRK09077 L-aspartate oxidase; 96.4 0.036 7.9E-07 56.6 12.3 32 42-74 9-40 (536)
338 COG0578 GlpA Glycerol-3-phosph 96.4 0.029 6.4E-07 56.5 11.2 33 41-73 12-44 (532)
339 PF02558 ApbA: Ketopantoate re 96.4 0.0082 1.8E-07 50.3 6.3 83 44-147 1-85 (151)
340 PRK07208 hypothetical protein; 96.4 0.0049 1.1E-07 61.9 5.5 39 40-78 3-41 (479)
341 PF13434 K_oxygenase: L-lysine 96.3 0.0093 2E-07 57.3 6.9 102 43-144 4-162 (341)
342 PRK15116 sulfur acceptor prote 96.3 0.015 3.3E-07 53.8 7.9 130 40-180 29-173 (268)
343 PF06039 Mqo: Malate:quinone o 96.3 0.03 6.5E-07 55.2 10.2 88 89-176 187-290 (488)
344 COG1233 Phytoene dehydrogenase 96.3 0.0051 1.1E-07 62.1 5.1 36 41-76 3-38 (487)
345 KOG2852 Possible oxidoreductas 96.3 0.012 2.7E-07 54.2 6.7 34 40-73 9-48 (380)
346 TIGR02733 desat_CrtD C-3',4' d 96.1 0.0075 1.6E-07 60.8 5.3 36 42-77 2-37 (492)
347 TIGR00562 proto_IX_ox protopor 96.1 0.0073 1.6E-07 60.2 5.1 35 42-76 3-41 (462)
348 KOG1298 Squalene monooxygenase 96.1 0.0075 1.6E-07 57.7 4.6 33 41-73 45-77 (509)
349 PLN02576 protoporphyrinogen ox 96.1 0.0085 1.8E-07 60.4 5.4 39 40-78 11-50 (496)
350 PLN03000 amine oxidase 96.1 0.014 3E-07 62.2 7.0 54 24-77 166-220 (881)
351 PF13241 NAD_binding_7: Putati 96.0 0.0072 1.6E-07 47.5 3.5 34 40-73 6-39 (103)
352 TIGR02734 crtI_fam phytoene de 96.0 0.0072 1.6E-07 61.1 4.4 34 44-77 1-34 (502)
353 COG0665 DadA Glycine/D-amino a 96.0 0.0089 1.9E-07 57.9 4.9 34 41-74 4-37 (387)
354 TIGR02731 phytoene_desat phyto 95.9 0.01 2.2E-07 59.2 5.2 36 43-78 1-36 (453)
355 PRK12416 protoporphyrinogen ox 95.9 0.0093 2E-07 59.6 4.8 37 42-78 2-44 (463)
356 PRK02705 murD UDP-N-acetylmura 95.9 0.032 6.8E-07 55.8 8.3 85 43-147 2-86 (459)
357 PRK13800 putative oxidoreducta 95.8 0.11 2.3E-06 56.6 12.7 33 42-74 14-46 (897)
358 TIGR01470 cysG_Nterm siroheme 95.8 0.033 7.2E-07 49.5 7.4 34 40-73 8-41 (205)
359 PRK06719 precorrin-2 dehydroge 95.8 0.015 3.2E-07 49.5 4.9 32 40-71 12-43 (157)
360 PRK01710 murD UDP-N-acetylmura 95.8 0.045 9.8E-07 54.8 9.1 92 28-147 4-95 (458)
361 COG0562 Glf UDP-galactopyranos 95.8 0.014 3.1E-07 54.6 4.9 38 43-80 3-40 (374)
362 COG0029 NadB Aspartate oxidase 95.8 0.056 1.2E-06 53.5 9.2 31 43-74 9-39 (518)
363 PLN02529 lysine-specific histo 95.7 0.015 3.2E-07 61.3 5.4 36 40-75 159-194 (738)
364 COG1232 HemY Protoporphyrinoge 95.7 0.014 3.1E-07 57.8 4.7 35 42-76 1-37 (444)
365 KOG1346 Programmed cell death 95.6 0.014 3E-07 56.4 4.4 98 43-144 180-314 (659)
366 TIGR00031 UDP-GALP_mutase UDP- 95.6 0.018 3.9E-07 56.1 5.1 36 43-78 3-38 (377)
367 PF14721 AIF_C: Apoptosis-indu 95.5 0.054 1.2E-06 43.6 6.7 33 203-237 1-34 (133)
368 TIGR03862 flavo_PP4765 unchara 95.5 0.14 2.9E-06 49.9 10.8 84 53-141 56-141 (376)
369 PF02737 3HCDH_N: 3-hydroxyacy 95.5 0.016 3.5E-07 50.4 4.0 36 43-78 1-36 (180)
370 TIGR02732 zeta_caro_desat caro 95.5 0.019 4.2E-07 57.7 5.0 35 43-77 1-35 (474)
371 TIGR01320 mal_quin_oxido malat 95.4 0.018 3.9E-07 58.0 4.7 32 43-74 2-35 (483)
372 PRK06249 2-dehydropantoate 2-r 95.4 0.12 2.7E-06 48.9 10.1 33 41-73 5-37 (313)
373 PRK06718 precorrin-2 dehydroge 95.4 0.026 5.7E-07 50.1 5.0 33 40-72 9-41 (202)
374 PRK02472 murD UDP-N-acetylmura 95.4 0.047 1E-06 54.3 7.4 83 40-147 4-86 (447)
375 COG1231 Monoamine oxidase [Ami 95.3 0.024 5.3E-07 55.4 5.1 40 40-79 6-45 (450)
376 TIGR02730 carot_isom carotene 95.3 0.021 4.6E-07 57.6 4.9 34 43-76 2-35 (493)
377 PLN02487 zeta-carotene desatur 95.3 0.024 5.2E-07 58.2 5.2 36 42-77 76-111 (569)
378 PRK04308 murD UDP-N-acetylmura 95.3 0.059 1.3E-06 53.7 7.7 80 40-147 4-85 (445)
379 PLN02328 lysine-specific histo 95.2 0.028 6.1E-07 59.7 5.4 37 40-76 237-273 (808)
380 PLN02612 phytoene desaturase 95.1 0.033 7.1E-07 57.3 5.5 38 40-77 92-129 (567)
381 PRK05708 2-dehydropantoate 2-r 95.0 0.1 2.2E-06 49.3 8.3 33 42-74 3-35 (305)
382 PRK06854 adenylylsulfate reduc 94.9 0.032 6.8E-07 58.0 4.9 40 161-208 389-428 (608)
383 COG1893 ApbA Ketopantoate redu 94.9 0.075 1.6E-06 50.3 7.0 82 43-146 2-84 (307)
384 PLN02568 polyamine oxidase 94.9 0.039 8.4E-07 56.4 5.4 38 41-78 5-47 (539)
385 PRK08229 2-dehydropantoate 2-r 94.9 0.15 3.3E-06 48.8 9.1 32 42-73 3-34 (341)
386 PF01488 Shikimate_DH: Shikima 94.9 0.095 2.1E-06 43.2 6.7 36 38-73 9-45 (135)
387 PRK00421 murC UDP-N-acetylmura 94.8 0.074 1.6E-06 53.2 7.0 78 40-147 6-84 (461)
388 TIGR02352 thiamin_ThiO glycine 94.8 0.12 2.7E-06 48.8 8.2 56 83-140 137-192 (337)
389 PRK12921 2-dehydropantoate 2-r 94.8 0.15 3.2E-06 47.9 8.7 30 43-72 2-31 (305)
390 KOG1335 Dihydrolipoamide dehyd 94.8 0.53 1.2E-05 45.4 12.1 37 40-76 38-74 (506)
391 PLN02676 polyamine oxidase 94.7 0.048 1E-06 55.0 5.5 39 40-78 25-64 (487)
392 PLN02612 phytoene desaturase 94.7 0.12 2.6E-06 53.2 8.4 56 83-138 308-363 (567)
393 PRK05257 malate:quinone oxidor 94.7 0.036 7.9E-07 56.0 4.5 33 42-74 6-40 (494)
394 KOG1800 Ferredoxin/adrenodoxin 94.7 0.18 4E-06 48.4 8.8 90 42-142 21-121 (468)
395 PRK08275 putative oxidoreducta 94.6 0.037 7.9E-07 56.8 4.4 45 155-208 357-401 (554)
396 PRK07819 3-hydroxybutyryl-CoA 94.6 0.041 8.8E-07 51.6 4.3 37 42-78 6-42 (286)
397 KOG0685 Flavin-containing amin 94.6 0.064 1.4E-06 52.8 5.6 40 40-79 20-60 (498)
398 PRK13800 putative oxidoreducta 94.5 0.038 8.2E-07 60.0 4.3 47 154-209 361-407 (897)
399 PF03721 UDPG_MGDP_dh_N: UDP-g 94.5 0.054 1.2E-06 47.3 4.5 53 43-96 2-62 (185)
400 PRK00141 murD UDP-N-acetylmura 94.5 0.14 3E-06 51.6 8.0 79 40-147 14-92 (473)
401 PRK04148 hypothetical protein; 94.5 0.056 1.2E-06 44.5 4.2 42 32-74 8-49 (134)
402 COG0771 MurD UDP-N-acetylmuram 94.3 0.14 3E-06 50.9 7.2 83 40-148 6-88 (448)
403 PF00732 GMC_oxred_N: GMC oxid 94.2 0.059 1.3E-06 50.3 4.5 36 43-78 2-38 (296)
404 TIGR02730 carot_isom carotene 94.1 0.19 4.2E-06 50.7 8.3 57 83-140 229-285 (493)
405 KOG2844 Dimethylglycine dehydr 94.1 0.32 6.9E-06 50.0 9.5 51 89-141 193-243 (856)
406 PRK03369 murD UDP-N-acetylmura 94.0 0.18 3.9E-06 50.9 7.8 78 40-147 11-88 (488)
407 KOG1276 Protoporphyrinogen oxi 93.9 0.077 1.7E-06 51.6 4.5 37 40-76 10-48 (491)
408 TIGR02731 phytoene_desat phyto 93.9 0.24 5.2E-06 49.3 8.3 57 83-139 213-274 (453)
409 PF01210 NAD_Gly3P_dh_N: NAD-d 93.9 0.074 1.6E-06 45.1 4.0 32 43-74 1-32 (157)
410 PRK05562 precorrin-2 dehydroge 93.9 0.097 2.1E-06 47.1 4.9 34 40-73 24-57 (223)
411 TIGR00561 pntA NAD(P) transhyd 93.9 0.22 4.8E-06 50.2 7.9 35 40-74 163-197 (511)
412 COG0686 Ald Alanine dehydrogen 93.7 0.42 9.1E-06 44.8 8.8 36 40-75 167-202 (371)
413 PRK08071 L-aspartate oxidase; 93.7 0.094 2E-06 53.3 5.1 54 155-210 333-387 (510)
414 PRK07066 3-hydroxybutyryl-CoA 93.7 0.085 1.8E-06 50.2 4.5 37 41-77 7-43 (321)
415 cd01080 NAD_bind_m-THF_DH_Cycl 93.7 0.15 3.3E-06 43.8 5.6 49 25-73 27-77 (168)
416 PRK12837 3-ketosteroid-delta-1 93.7 0.085 1.8E-06 53.6 4.7 33 42-75 8-40 (513)
417 PRK09231 fumarate reductase fl 93.6 0.092 2E-06 54.2 5.0 55 154-210 358-413 (582)
418 PRK13339 malate:quinone oxidor 93.6 0.09 1.9E-06 53.1 4.8 32 41-72 6-39 (497)
419 PRK08293 3-hydroxybutyryl-CoA 93.6 0.1 2.3E-06 48.7 4.8 34 42-75 4-37 (287)
420 TIGR02734 crtI_fam phytoene de 93.6 0.27 5.8E-06 49.7 8.1 57 83-140 219-275 (502)
421 PRK12842 putative succinate de 93.5 0.098 2.1E-06 53.9 4.8 35 41-75 9-43 (574)
422 COG4529 Uncharacterized protei 93.4 1.6 3.5E-05 43.3 12.8 34 41-74 196-231 (474)
423 COG2085 Predicted dinucleotide 93.4 0.18 3.9E-06 44.6 5.6 91 42-161 2-92 (211)
424 PRK09077 L-aspartate oxidase; 93.4 0.11 2.4E-06 53.2 4.9 54 155-210 354-408 (536)
425 PRK06263 sdhA succinate dehydr 93.3 0.11 2.4E-06 53.2 4.9 53 155-210 349-402 (543)
426 PRK07804 L-aspartate oxidase; 93.3 0.11 2.4E-06 53.2 4.9 58 82-139 143-208 (541)
427 PF00899 ThiF: ThiF family; I 93.3 0.098 2.1E-06 43.0 3.7 33 41-73 2-35 (135)
428 KOG3855 Monooxygenase involved 93.2 0.62 1.3E-05 45.4 9.4 47 95-141 165-217 (481)
429 PTZ00363 rab-GDP dissociation 93.1 0.11 2.4E-06 51.8 4.4 38 42-79 5-42 (443)
430 PRK09260 3-hydroxybutyryl-CoA 93.1 0.13 2.7E-06 48.2 4.5 34 42-75 2-35 (288)
431 TIGR02354 thiF_fam2 thiamine b 93.0 0.22 4.8E-06 44.1 5.8 34 40-73 20-54 (200)
432 TIGR01176 fum_red_Fp fumarate 93.0 0.14 3E-06 52.9 5.1 55 154-210 357-412 (580)
433 PRK04690 murD UDP-N-acetylmura 92.9 0.31 6.8E-06 48.9 7.4 81 40-147 7-87 (468)
434 COG2907 Predicted NAD/FAD-bind 92.8 0.11 2.3E-06 49.4 3.6 38 40-78 7-44 (447)
435 PTZ00363 rab-GDP dissociation 92.8 0.51 1.1E-05 47.1 8.5 61 82-142 231-291 (443)
436 TIGR00551 nadB L-aspartate oxi 92.7 0.17 3.7E-06 51.1 5.2 56 153-210 332-388 (488)
437 PLN02976 amine oxidase 92.7 0.17 3.7E-06 56.6 5.3 40 40-79 692-731 (1713)
438 KOG4716 Thioredoxin reductase 92.7 1.4 3.1E-05 41.9 10.6 31 41-71 19-49 (503)
439 KOG0405 Pyridine nucleotide-di 92.7 0.74 1.6E-05 43.9 8.8 98 42-144 21-168 (478)
440 PRK05329 anaerobic glycerol-3- 92.7 0.16 3.5E-06 50.3 4.8 32 42-73 3-34 (422)
441 PRK07843 3-ketosteroid-delta-1 92.6 0.16 3.5E-06 52.2 4.9 35 42-76 8-42 (557)
442 COG0569 TrkA K+ transport syst 92.6 0.17 3.6E-06 45.7 4.4 33 42-74 1-33 (225)
443 COG1206 Gid NAD(FAD)-utilizing 92.5 0.12 2.6E-06 48.7 3.4 34 42-75 4-37 (439)
444 PLN02256 arogenate dehydrogena 92.5 0.35 7.5E-06 45.7 6.6 64 5-73 5-68 (304)
445 PRK08401 L-aspartate oxidase; 92.4 0.19 4E-06 50.5 5.0 54 154-209 310-364 (466)
446 TIGR01082 murC UDP-N-acetylmur 92.4 0.32 6.9E-06 48.5 6.6 74 43-146 1-75 (448)
447 PRK06129 3-hydroxyacyl-CoA deh 92.4 0.16 3.5E-06 48.0 4.3 34 42-75 3-36 (308)
448 PF02254 TrkA_N: TrkA-N domain 92.4 0.21 4.6E-06 39.5 4.4 73 44-140 1-73 (116)
449 PRK09620 hypothetical protein; 92.2 0.57 1.2E-05 42.4 7.4 34 40-73 2-52 (229)
450 cd00401 AdoHcyase S-adenosyl-L 92.1 0.22 4.8E-06 49.0 5.0 35 40-74 201-235 (413)
451 PF01262 AlaDh_PNT_C: Alanine 92.1 0.26 5.7E-06 42.2 4.8 34 40-73 19-52 (168)
452 COG0029 NadB Aspartate oxidase 92.0 0.22 4.9E-06 49.4 4.9 56 154-211 341-397 (518)
453 TIGR03197 MnmC_Cterm tRNA U-34 91.9 0.37 8E-06 46.8 6.3 56 83-141 135-190 (381)
454 cd01078 NAD_bind_H4MPT_DH NADP 91.8 0.49 1.1E-05 41.4 6.4 35 39-73 26-61 (194)
455 TIGR02061 aprA adenosine phosp 91.7 0.19 4.1E-06 52.2 4.2 40 161-208 400-439 (614)
456 TIGR01087 murD UDP-N-acetylmur 91.7 0.52 1.1E-05 46.7 7.2 78 43-146 1-79 (433)
457 COG1004 Ugd Predicted UDP-gluc 91.7 0.31 6.7E-06 47.2 5.3 50 43-92 2-58 (414)
458 PRK07530 3-hydroxybutyryl-CoA 91.7 0.22 4.8E-06 46.6 4.3 35 41-75 4-38 (292)
459 TIGR02853 spore_dpaA dipicolin 91.7 0.25 5.5E-06 46.3 4.7 35 40-74 150-184 (287)
460 TIGR01812 sdhA_frdA_Gneg succi 91.5 0.24 5.3E-06 50.9 4.8 53 155-209 343-400 (566)
461 COG1648 CysG Siroheme synthase 91.5 0.32 6.9E-06 43.4 4.9 34 40-73 11-44 (210)
462 PF13478 XdhC_C: XdhC Rossmann 91.5 0.22 4.7E-06 41.3 3.5 35 44-78 1-35 (136)
463 PRK09496 trkA potassium transp 91.5 0.54 1.2E-05 46.7 7.1 57 18-74 206-264 (453)
464 PRK06035 3-hydroxyacyl-CoA deh 91.4 0.23 4.9E-06 46.5 4.1 34 42-75 4-37 (291)
465 TIGR02462 pyranose_ox pyranose 91.4 0.26 5.6E-06 50.3 4.8 34 43-76 2-35 (544)
466 PF00670 AdoHcyase_NAD: S-aden 91.4 0.26 5.6E-06 42.0 4.0 35 40-74 22-56 (162)
467 PRK07512 L-aspartate oxidase; 91.4 0.25 5.5E-06 50.2 4.7 55 154-210 341-396 (513)
468 PRK02106 choline dehydrogenase 91.3 0.24 5.2E-06 50.9 4.5 33 42-74 6-39 (560)
469 PF02826 2-Hacid_dh_C: D-isome 91.2 0.41 8.8E-06 41.4 5.1 36 40-75 35-70 (178)
470 TIGR01811 sdhA_Bsu succinate d 91.1 0.29 6.2E-06 50.8 4.9 52 155-209 371-423 (603)
471 PRK06175 L-aspartate oxidase; 91.1 0.32 6.9E-06 48.3 5.0 55 153-209 330-385 (433)
472 PRK08641 sdhA succinate dehydr 91.1 0.28 6.1E-06 50.8 4.8 53 154-209 355-408 (589)
473 TIGR02356 adenyl_thiF thiazole 91.1 0.43 9.4E-06 42.2 5.3 34 40-73 20-54 (202)
474 PRK14175 bifunctional 5,10-met 91.1 0.62 1.3E-05 43.5 6.5 49 25-73 141-191 (286)
475 PRK14573 bifunctional D-alanyl 91.0 0.49 1.1E-05 50.9 6.6 76 41-146 4-80 (809)
476 TIGR02437 FadB fatty oxidation 91.0 0.26 5.6E-06 52.2 4.4 38 41-78 313-350 (714)
477 cd01075 NAD_bind_Leu_Phe_Val_D 91.0 0.41 8.8E-06 42.4 5.0 35 39-73 26-60 (200)
478 PRK12475 thiamine/molybdopteri 90.9 0.4 8.7E-06 46.0 5.3 35 40-74 23-58 (338)
479 PRK06522 2-dehydropantoate 2-r 90.8 0.31 6.7E-06 45.6 4.4 31 43-73 2-32 (304)
480 PRK11730 fadB multifunctional 90.8 0.27 5.9E-06 52.0 4.4 37 42-78 314-350 (715)
481 PRK06452 sdhA succinate dehydr 90.8 0.36 7.9E-06 49.7 5.2 54 154-209 346-401 (566)
482 PRK05808 3-hydroxybutyryl-CoA 90.8 0.3 6.6E-06 45.4 4.3 35 42-76 4-38 (282)
483 TIGR02733 desat_CrtD C-3',4' d 90.7 0.86 1.9E-05 45.9 7.8 56 83-139 232-292 (492)
484 TIGR00936 ahcY adenosylhomocys 90.7 0.38 8.2E-06 47.3 4.9 35 40-74 194-228 (406)
485 cd01065 NAD_bind_Shikimate_DH 90.6 0.57 1.2E-05 39.1 5.4 34 40-73 18-52 (155)
486 PLN02815 L-aspartate oxidase 90.6 0.35 7.6E-06 50.1 4.8 54 154-209 377-431 (594)
487 PRK06849 hypothetical protein; 90.5 0.83 1.8E-05 44.6 7.2 63 40-102 3-81 (389)
488 TIGR02279 PaaC-3OHAcCoADH 3-hy 90.5 0.32 7E-06 49.3 4.4 39 40-78 4-42 (503)
489 TIGR00518 alaDH alanine dehydr 90.5 0.37 8.1E-06 46.8 4.7 35 40-74 166-200 (370)
490 PRK03803 murD UDP-N-acetylmura 90.4 0.87 1.9E-05 45.4 7.4 78 41-147 6-86 (448)
491 COG2509 Uncharacterized FAD-de 90.4 0.25 5.4E-06 48.6 3.3 44 156-209 438-481 (486)
492 TIGR02441 fa_ox_alpha_mit fatt 90.3 0.31 6.6E-06 51.8 4.3 37 42-78 336-372 (737)
493 PRK07688 thiamine/molybdopteri 90.2 0.53 1.2E-05 45.2 5.4 34 40-73 23-57 (339)
494 PRK08268 3-hydroxy-acyl-CoA de 90.2 0.36 7.9E-06 49.0 4.5 38 41-78 7-44 (507)
495 PF13460 NAD_binding_10: NADH( 90.2 0.48 1E-05 40.6 4.7 32 44-75 1-33 (183)
496 PRK06069 sdhA succinate dehydr 90.1 0.36 7.9E-06 49.8 4.6 53 155-209 353-412 (577)
497 PLN02545 3-hydroxybutyryl-CoA 90.1 0.38 8.2E-06 45.1 4.3 35 41-75 4-38 (295)
498 PRK07523 gluconate 5-dehydroge 90.1 1.4 3E-05 39.9 7.9 34 40-73 9-43 (255)
499 PRK05476 S-adenosyl-L-homocyst 90.0 0.45 9.8E-06 47.0 4.9 35 40-74 211-245 (425)
500 cd01492 Aos1_SUMO Ubiquitin ac 90.0 0.72 1.6E-05 40.7 5.8 34 40-73 20-54 (197)
No 1
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=4.5e-41 Score=333.39 Aligned_cols=304 Identities=20% Similarity=0.235 Sum_probs=249.9
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|+.+++||.+.++++++++++++.++++.+....+++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++++
T Consensus 114 ~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~ 193 (444)
T PRK09564 114 RPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEI 193 (444)
T ss_pred CCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHH
Confidence 46666789988889999999999999998887656899999999999999999999999999999999988876589999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEeccc
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL 163 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~~ 163 (358)
.+.+++.|++.||++++++++++++. ++.+..+.+ ++.++++|.+++|+|++|++++++.. +.. ++|+|.||+++
T Consensus 194 ~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~-~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~ 270 (444)
T PRK09564 194 TDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVT-DKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYG 270 (444)
T ss_pred HHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEe-CCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCc
Confidence 99999999999999999999999964 344444444 45579999999999999999887754 665 67889999999
Q ss_pred cCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEE
Q 018320 164 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 243 (358)
Q Consensus 164 ~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~ 243 (358)
+|+.|+|||+|||+..+....+.+.+.+++..|.+||+++|+||+|.... .....+.....++++.++++|+++.++..
T Consensus 271 ~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~-~~~~~~~~~~~~~~~~~a~vG~t~~~a~~ 349 (444)
T PRK09564 271 ETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVS-FKGTLGSACIKVLDLEAARTGLTEEEAKK 349 (444)
T ss_pred ccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCC-CCCcccceEEEECCEEEEEecCCHHHHHH
Confidence 99999999999999987766666666788999999999999999986532 22334444556889999999998765422
Q ss_pred Ec---------cCC--------CCceEEEEe--eCCeEEEEEEeCCC-H-HHHHHHHHHHHcCCCcccHHHHhhcCCccc
Q 018320 244 YG---------NFS--------GTTFGAYWV--NKGRLVGSFLEGGT-K-EEYEAIAKATRLQPVVEDLAELETQGLGFA 302 (358)
Q Consensus 244 ~g---------~~~--------~~~~~~~~~--~~g~ilGa~~vg~~-~-~~~~~~a~ai~~~~~~~dl~~l~~~~~~ya 302 (358)
.| ... ..+|.|+.. ++++|||+|++|+. + +.++.++.||++++|++||.+++ +.|+
T Consensus 350 ~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~---~~~~ 426 (444)
T PRK09564 350 LGIDYKTVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMD---FCYA 426 (444)
T ss_pred CCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcc---cccC
Confidence 11 111 123666554 68999999999985 5 44678899999999999999988 9999
Q ss_pred CCcCCCCCCCCccc
Q 018320 303 LAVSQKPLPSTPVD 316 (358)
Q Consensus 303 p~~~~~~~~~~~~~ 316 (358)
|+|+++.++.+..+
T Consensus 427 p~~~~~~~~~~~~~ 440 (444)
T PRK09564 427 PPFARTWDALNVAG 440 (444)
T ss_pred CCCCCCcCHHHHHH
Confidence 99999988765554
No 2
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=4.8e-41 Score=332.43 Aligned_cols=292 Identities=17% Similarity=0.285 Sum_probs=240.4
Q ss_pred CCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHH
Q 018320 15 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK 94 (358)
Q Consensus 15 ~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~ 94 (358)
.+.++++++++++++..+++.+....+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.|+
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~ 200 (438)
T PRK13512 122 FESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELD 200 (438)
T ss_pred CCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHH
Confidence 44578999999999999998886656899999999999999999999999999999999998875 89999999999999
Q ss_pred hCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEeccccCCCCcEEE
Q 018320 95 SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYA 172 (358)
Q Consensus 95 ~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~~~t~~~~VyA 172 (358)
++||++++++++++++. . .+.+.+|+++++|.|++++|++||+++++.. +.. ++|+|.||+++||+.|+|||
T Consensus 201 ~~gI~i~~~~~v~~i~~---~---~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 274 (438)
T PRK13512 201 KREIPYRLNEEIDAING---N---EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYA 274 (438)
T ss_pred hcCCEEEECCeEEEEeC---C---EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEE
Confidence 99999999999999963 1 3566788899999999999999999987654 555 56889999999999999999
Q ss_pred EcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc-------
Q 018320 173 VGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG------- 245 (358)
Q Consensus 173 iGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g------- 245 (358)
+|||+.......+.+...+++..|.+||+.+|+||+|.......+..+..+..++++.++++|+++.++...+
T Consensus 275 ~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~~~~~~~ 354 (438)
T PRK13512 275 IGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVT 354 (438)
T ss_pred eeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccCCcEEEEEe
Confidence 9999986544445555556777899999999999998542112245556667889999999999987554221
Q ss_pred c--------CCCCceEEEEe--eCCeEEEEEEeCCC-HH-HHHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCCCCCCC
Q 018320 246 N--------FSGTTFGAYWV--NKGRLVGSFLEGGT-KE-EYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPST 313 (358)
Q Consensus 246 ~--------~~~~~~~~~~~--~~g~ilGa~~vg~~-~~-~~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~~~~~~ 313 (358)
. ....+|.|+.. ++++|||+|++|++ +. .++.++.||++++|++||.+++ +.|+|+|++..++.+
T Consensus 355 ~~~~~~~~~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~~P~~~~~~~~~~ 431 (438)
T PRK13512 355 QGAHANYYPGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFE---VAYAPPYSHPKDLIN 431 (438)
T ss_pred cCCcCCCcCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcc---cccCCCCCccccHHH
Confidence 0 01123666554 58999999999986 44 4678899999999999999988 999999999887766
Q ss_pred ccc
Q 018320 314 PVD 316 (358)
Q Consensus 314 ~~~ 316 (358)
..+
T Consensus 432 ~~~ 434 (438)
T PRK13512 432 MIG 434 (438)
T ss_pred HHH
Confidence 655
No 3
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=9.8e-41 Score=329.43 Aligned_cols=299 Identities=25% Similarity=0.321 Sum_probs=247.9
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|+.+++||.+.++++++++++++.++++.+....+++++|||||++|+|+|..|++.|.+||++++.++++.+.+++++
T Consensus 102 ~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~ 181 (427)
T TIGR03385 102 SPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEM 181 (427)
T ss_pred CCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHH
Confidence 56777899988789999999999999998886556899999999999999999999999999999999888544589999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEeccc
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL 163 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~~ 163 (358)
.+.+.+.|++.||++++++.+++++. ++.+ +.+.+|+++++|.+++++|.+|++++++.. +.+ ++|+|.||+++
T Consensus 182 ~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~ 257 (427)
T TIGR03385 182 NQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKF 257 (427)
T ss_pred HHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCc
Confidence 99999999999999999999999975 3332 456788899999999999999999988764 555 56899999999
Q ss_pred cCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCC-CCCCeEEEEecCceEEEeecccceEE
Q 018320 164 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKF-DYLPFFYSRVFTLSWQFYGDNVGEVV 242 (358)
Q Consensus 164 ~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~~~~~ 242 (358)
+|+.|+|||+|||+..+....+.+...+++..|.+||+++|+||+|.. ..+ ...+...+.++++.++++|+++.++.
T Consensus 258 ~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~~--~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~ 335 (427)
T TIGR03385 258 QTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGND--IEFKGVLGTNITKFFDLTIASTGVTENEAK 335 (427)
T ss_pred EeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCCC--CCCCCcceeeEEEEcCeEEEEecCCHHHHH
Confidence 999999999999999877666666556788999999999999999864 233 33455667889999999999876432
Q ss_pred EEc---------cCC--------CCceEEEEe--eCCeEEEEEEeCCC-HHH-HHHHHHHHHcCCCcccHHHHhhcCCcc
Q 018320 243 HYG---------NFS--------GTTFGAYWV--NKGRLVGSFLEGGT-KEE-YEAIAKATRLQPVVEDLAELETQGLGF 301 (358)
Q Consensus 243 ~~g---------~~~--------~~~~~~~~~--~~g~ilGa~~vg~~-~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~y 301 (358)
..| ... ..+|.++.. ++++|||+|++|++ +.+ +..++.||++++|++||.+++ +.|
T Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~ 412 (427)
T TIGR03385 336 KLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFE---LAY 412 (427)
T ss_pred HCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcc---ccc
Confidence 111 111 122666655 57999999999988 555 678899999999999999999 999
Q ss_pred cCCcCCCCCCCC
Q 018320 302 ALAVSQKPLPST 313 (358)
Q Consensus 302 ap~~~~~~~~~~ 313 (358)
+|+|.+..++.+
T Consensus 413 ~p~~~~~~~~~~ 424 (427)
T TIGR03385 413 APPYSRVWDPLN 424 (427)
T ss_pred CCCCCCccchHH
Confidence 999998765443
No 4
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=8.4e-39 Score=312.68 Aligned_cols=278 Identities=27% Similarity=0.357 Sum_probs=235.7
Q ss_pred CccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHH
Q 018320 7 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA 86 (358)
Q Consensus 7 P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~ 86 (358)
|+.+++++.+.++++++++++|+.++++.+. .+++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++.
T Consensus 112 ~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~--~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~ 189 (396)
T PRK09754 112 ARPLPLLDALGERCFTLRHAGDAARLREVLQ--PERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQ 189 (396)
T ss_pred CCCCCCCCcCCCCEEecCCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHH
Confidence 4555667766789999999999999988775 57899999999999999999999999999999999998876789999
Q ss_pred HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEeccccC
Q 018320 87 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQS 165 (358)
Q Consensus 87 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd~~~~t 165 (358)
+.+.+.++++||++++++.+++++. ++. ..+.+.+|+++++|.|++++|.+||+.+++.. +.. +++|.||++|||
T Consensus 190 ~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~~~t 265 (396)
T PRK09754 190 RYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEACRT 265 (396)
T ss_pred HHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCCCcc
Confidence 9999999999999999999999974 222 35778889999999999999999999887543 444 467999999999
Q ss_pred CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccce-EEEE
Q 018320 166 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE-VVHY 244 (358)
Q Consensus 166 ~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~-~~~~ 244 (358)
+.|+|||+|||+..+.+ +|...+.++|..|..||++||.||+|.. .++..+|++|+++|+++++++|....+ ....
T Consensus 266 s~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~ 342 (396)
T PRK09754 266 CDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAMLGLP--LPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCR 342 (396)
T ss_pred CCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcCCC--CCCCCCCceEEEeCCccEEEeeCCCCCEEEEe
Confidence 99999999999988776 7777788999999999999999999876 467889999999999999999965543 3455
Q ss_pred ccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHh
Q 018320 245 GNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELE 295 (358)
Q Consensus 245 g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~ 295 (358)
++.++..|..++.++|+|+|+.++|. ..+...+..+|+.+.++ +...|.
T Consensus 343 ~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 391 (396)
T PRK09754 343 GNPETQKAIWFNLQNGVLIGAVTLNQ-GREIRPIRKWIQSGKTF-DAKLLI 391 (396)
T ss_pred cCCCCceEEEEEeeCCEEEEEEEECC-HHHHHHHHHHHHCCCCC-CHHHhc
Confidence 65555456677778999999999995 66777778889988877 444444
No 5
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.1e-39 Score=319.65 Aligned_cols=276 Identities=25% Similarity=0.317 Sum_probs=217.4
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|..+++||.+...+++-++ +..+. .-|++++|||||++|+|+|..++++|.+|||+++.++++|. +|+++
T Consensus 146 ~p~~~~~~~~~~~~~~~s~~---~l~~~-----~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei 216 (454)
T COG1249 146 RPRIPPGPGIDGARILDSSD---ALFLL-----ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEI 216 (454)
T ss_pred CCcCCCCCCCCCCeEEechh---hcccc-----cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHH
Confidence 45555566665555553322 21111 14899999999999999999999999999999999999997 99999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCChhh---hhccccc-ccCcEEE
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTSL---FEGQLTL-EKGGIKV 159 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~l---~~~~~~~-~~g~i~v 159 (358)
++.+.+.|++.|+++++++.+++++.++++ ..+.+++|+ ++++|.+++|+|++||++- .+.++++ ++|+|.|
T Consensus 217 ~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~V 294 (454)
T COG1249 217 SKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKV 294 (454)
T ss_pred HHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEe
Confidence 999999999999999999999999874444 467777765 7999999999999999983 2344777 5689999
Q ss_pred eccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEEecCceEEEeeccc
Q 018320 160 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME-PDKTDKFDYLPFFYSRVFTLSWQFYGDNV 238 (358)
Q Consensus 160 d~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~~~~~~~~~G~~~ 238 (358)
|++++|++|+|||+|||+..+. +.+.|..||++|++||++ .....++..+|+.++ .+..++++|+++
T Consensus 295 D~~~~Tnvp~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~if--t~Peia~VGlte 362 (454)
T COG1249 295 DDQMTTNVPGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVF--TDPEIASVGLTE 362 (454)
T ss_pred CCccccCCCCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEE--CCCcceeeeCCH
Confidence 9888889999999999988764 467899999999999997 333346788998664 566789999998
Q ss_pred ceEEEEc--------c----------CCCCceEEEEe--eCCeEEEEEEeCCCHHHH-HHHHHHHHcCCCcccHHHHhhc
Q 018320 239 GEVVHYG--------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQ 297 (358)
Q Consensus 239 ~~~~~~g--------~----------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~-~~~a~ai~~~~~~~dl~~l~~~ 297 (358)
.++...+ . .+..+|.|+.. ++++|||+|++|+++.++ ..++.||++++|.+|+....
T Consensus 363 ~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i-- 440 (454)
T COG1249 363 EEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTI-- 440 (454)
T ss_pred HHHHhcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCC--
Confidence 7653222 0 11234766655 579999999999998876 56799999999999887655
Q ss_pred CCcccCCcCCC
Q 018320 298 GLGFALAVSQK 308 (358)
Q Consensus 298 ~~~yap~~~~~ 308 (358)
..+|++++.
T Consensus 441 --~~HPT~sE~ 449 (454)
T COG1249 441 --HAHPTLSEA 449 (454)
T ss_pred --CCCCChHHH
Confidence 556666554
No 6
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=4.1e-39 Score=306.73 Aligned_cols=294 Identities=50% Similarity=0.874 Sum_probs=268.4
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
.|+.+++||.+.+|++++|+++|++.+...+. ..++|+++|+|++|+|+|..|...+.+||+|++.+.++++.+.+++
T Consensus 180 ~~~~l~~pG~~~~nv~~ireieda~~l~~~~~--~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i 257 (478)
T KOG1336|consen 180 SAKTLDIPGVELKNVFYLREIEDANRLVAAIQ--LGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSI 257 (478)
T ss_pred ccccCCCCCccccceeeeccHHHHHHHHHHhc--cCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHH
Confidence 56778899999999999999999999988886 4788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcccc-cccCcEEEecccc
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLT-LEKGGIKVTGRLQ 164 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~-~~~g~i~vd~~~~ 164 (358)
++.++++++++||++++++.+.+++.+.+|++..|.+.||+++++|.|++.+|.+|++.+++.... .+.|+|.||++||
T Consensus 258 ~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~ 337 (478)
T KOG1336|consen 258 GQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQ 337 (478)
T ss_pred HHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccccceecccCCEeehhcee
Confidence 999999999999999999999999988889999999999999999999999999999999885433 4789999999999
Q ss_pred CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEE
Q 018320 165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY 244 (358)
Q Consensus 165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~ 244 (358)
|++|+|||+|||+..+.+.++..+++.|++.|..+|+.+...+...... .+.++|+|++.+|++.|.+.|.+.++.+..
T Consensus 338 t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~-~~~~lPyf~t~~f~~~~~~~G~g~~~~v~~ 416 (478)
T KOG1336|consen 338 TSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQD-AYDYLPYFYTRFFSLSWRFAGDGVGDVVLF 416 (478)
T ss_pred eccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCcc-cccccchHHHHHhhhhccccCcCccceeee
Confidence 9999999999999999998888778999999999999887777655432 377999999999999999999999999999
Q ss_pred ccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHhhcCCcccC
Q 018320 245 GNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 303 (358)
Q Consensus 245 g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~yap 303 (358)
|+.+-..|+.+|.+ +..+++.+-+..+++.+.++..++.+..+..+..+...+..|+.
T Consensus 417 G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~~~a~l~~~~~~v~~~~~~~~~~~~~~~ 474 (478)
T KOG1336|consen 417 GDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVSQFAKLARQGPEVTSLKLLSKSGDSFWL 474 (478)
T ss_pred cccccccceeeEee-ccEEEEEeccCCChHHHHHHHHHhcCCcchhhhhccccchhhHH
Confidence 98876679999999 99999999998888899999999999999988888877766653
No 7
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1e-36 Score=320.10 Aligned_cols=310 Identities=19% Similarity=0.227 Sum_probs=240.8
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|..+++||.+.+++|++|+++|+.++++.+. .+++++|||||++|+|+|..|+++|.+||++++.+++++..+|+++
T Consensus 112 ~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~--~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~ 189 (847)
T PRK14989 112 YPWIPPIKGSETQDCFVYRTIEDLNAIEACAR--RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMG 189 (847)
T ss_pred CcCCCCCCCCCCCCeEEECCHHHHHHHHHHHh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHH
Confidence 45566799998899999999999999988775 5789999999999999999999999999999999999987799999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEeccc
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL 163 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~~ 163 (358)
++.+.+.|+++||++++++.+++|..++++....+.+.||+++++|.||+++|++||+++++.. +.. ++|+|.||++|
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l 269 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSC 269 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCC
Confidence 9999999999999999999999997533344556888999999999999999999999987654 666 67899999999
Q ss_pred cCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccce---
Q 018320 164 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE--- 240 (358)
Q Consensus 164 ~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~--- 240 (358)
+|++|+|||+|||+......+ .++..|.+||++||+||+|.... ..........+++++.++++|...+.
T Consensus 270 ~Ts~p~IYAiGD~a~~~~~~~------gl~~~a~~~a~vaa~~i~g~~~~-~~g~~~~~~lk~~G~~v~s~G~~~~~~~~ 342 (847)
T PRK14989 270 QTSDPDIYAIGECASWNNRVF------GLVAPGYKMAQVAVDHLLGSENA-FEGADLSAKLKLLGVDVGGIGDAHGRTPG 342 (847)
T ss_pred cCCCCCEEEeecceeEcCccc------ccHHHHHHHHHHHHHHhcCCCcC-CCCcccceEEEECCcceEecccccCCCCC
Confidence 999999999999999865433 46789999999999999987632 22223334678899999999954332
Q ss_pred --EEEEccCCCCceEEEEe--eCCeEEEEEEeCCCHHHHHHHHHHHHcCCCccc-HHHHhhcCCc--ccCCcCCCCCCCC
Q 018320 241 --VVHYGNFSGTTFGAYWV--NKGRLVGSFLEGGTKEEYEAIAKATRLQPVVED-LAELETQGLG--FALAVSQKPLPST 313 (358)
Q Consensus 241 --~~~~g~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~d-l~~l~~~~~~--yap~~~~~~~~~~ 313 (358)
.....+.....|.++.+ ++++|+|++++|+.. ....+...+..++++.+ ...|..+... -+|..+...+|..
T Consensus 343 ~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~-~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~d~ 421 (847)
T PRK14989 343 ARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTS-DYGNLLQLVLNAIELPENPDSLILPAHAGSGKPSIGVDKLPDS 421 (847)
T ss_pred ceeEEEEcCCCCEEEEEEEECCCCEEEEEEEECCHH-HHHHHHHHHHcCCCCccchhheecCCCCCCCCCccccccCCCC
Confidence 23333333345888766 467999999999644 34444455567777755 3333311110 1244545578888
Q ss_pred cccccccccccc
Q 018320 314 PVDGKTVPGLVL 325 (358)
Q Consensus 314 ~~~~~~~n~~~~ 325 (358)
..+|.|.|+-.+
T Consensus 422 a~iC~C~~Vt~~ 433 (847)
T PRK14989 422 AQICSCFDVTKG 433 (847)
T ss_pred CEEEEeecccHH
Confidence 899885555444
No 8
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=4.4e-37 Score=304.98 Aligned_cols=276 Identities=20% Similarity=0.269 Sum_probs=216.8
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|+.+++||.+...+ .+.+++..+.. .+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus 139 ~p~~p~i~g~~~~~~---~~~~~~~~l~~-----~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~ 209 (451)
T PRK07846 139 RPVIPPVIADSGVRY---HTSDTIMRLPE-----LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDI 209 (451)
T ss_pred CCCCCCCCCcCCccE---EchHHHhhhhh-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHH
Confidence 466667888654433 35555554432 3789999999999999999999999999999999999876 89999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh---ccccc-ccCcEEEec
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTG 161 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~~g~i~vd~ 161 (358)
.+.+.+.+ +.||++++++++++++.+ ++. ..+.+.+|+++++|.|++++|++|+++++. ..+++ ++|+|.||+
T Consensus 210 ~~~l~~l~-~~~v~i~~~~~v~~i~~~-~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~ 286 (451)
T PRK07846 210 SERFTELA-SKRWDVRLGRNVVGVSQD-GSG-VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE 286 (451)
T ss_pred HHHHHHHH-hcCeEEEeCCEEEEEEEc-CCE-EEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECC
Confidence 98887655 568999999999999863 333 346677888999999999999999999753 23665 678899999
Q ss_pred cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecccc
Q 018320 162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVG 239 (358)
Q Consensus 162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~ 239 (358)
++||+.|+|||+|||+..+ ++...|.+||+++++||++... ..++..+|+.++ .++.++++|+++.
T Consensus 287 ~~~Ts~p~IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if--~~p~ia~vGlte~ 354 (451)
T PRK07846 287 YQRTSAEGVFALGDVSSPY----------QLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVF--THPQIASVGLTEN 354 (451)
T ss_pred CcccCCCCEEEEeecCCCc----------cChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEE--CCCCcEeEeCCHH
Confidence 9999999999999999754 3566899999999999997532 245677887653 5788999999987
Q ss_pred eEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcC
Q 018320 240 EVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG 298 (358)
Q Consensus 240 ~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~ 298 (358)
++...| + .+..+|.|+.. ++++|||+|++|+++.+ ++.++.||++++|++||.+..
T Consensus 355 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~--- 431 (451)
T PRK07846 355 EARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQ--- 431 (451)
T ss_pred HHHhcCCCEEEEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCC---
Confidence 543222 0 11123666554 58999999999988655 678899999999999998766
Q ss_pred CcccCCcCCC
Q 018320 299 LGFALAVSQK 308 (358)
Q Consensus 299 ~~yap~~~~~ 308 (358)
+.++|.+++.
T Consensus 432 ~~~hPt~~e~ 441 (451)
T PRK07846 432 YWIHPALPEV 441 (451)
T ss_pred CccCCcHHHH
Confidence 5678888764
No 9
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=8e-37 Score=304.42 Aligned_cols=275 Identities=16% Similarity=0.225 Sum_probs=214.4
Q ss_pred CccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHH
Q 018320 7 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA 86 (358)
Q Consensus 7 P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~ 86 (358)
|..+++++.+.+++++ ++.+.+... .+++++|||+|++|+|+|..|++.|.+||++++.+++++. +|+++.
T Consensus 149 p~~p~~~~~~~~~v~~------~~~~~~~~~--~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~ 219 (461)
T PRK05249 149 PYRPPDVDFDHPRIYD------SDSILSLDH--LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEIS 219 (461)
T ss_pred CCCCCCCCCCCCeEEc------HHHhhchhh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHH
Confidence 3334455555566663 223322222 4799999999999999999999999999999999999986 899999
Q ss_pred HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--h-ccccc-ccCcEEEecc
Q 018320 87 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTGR 162 (358)
Q Consensus 87 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~~~~-~~g~i~vd~~ 162 (358)
+.+.+.|+++||++++++.+++++.++++ ..+++.+|+++++|.|++|+|++||++++ + ..+.+ ++|+|.||++
T Consensus 220 ~~l~~~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~ 297 (461)
T PRK05249 220 DALSYHLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNEN 297 (461)
T ss_pred HHHHHHHHHcCCEEEECCEEEEEEEeCCe--EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCC
Confidence 99999999999999999999999864333 34566788899999999999999999853 2 23555 5788999999
Q ss_pred ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE
Q 018320 163 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV 242 (358)
Q Consensus 163 ~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~ 242 (358)
+||+.|+|||+|||+..+ .++..|..||+.||.+|+|......+..+|+.++.. ..++++|+++.++.
T Consensus 298 ~~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~--p~ia~vG~te~~a~ 365 (461)
T PRK05249 298 YQTAVPHIYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTI--PEISSVGKTEQELT 365 (461)
T ss_pred cccCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECC--CcceEecCCHHHHH
Confidence 999999999999998654 356789999999999999865445667788876544 47899999886432
Q ss_pred EEc-----------cC-------CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcc
Q 018320 243 HYG-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGF 301 (358)
Q Consensus 243 ~~g-----------~~-------~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~y 301 (358)
..| .. +..+|.++.. ++++|||+|++|+++.+ ++.++.||++++|++||.++. +.|
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~ 442 (461)
T PRK05249 366 AAKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTT---FNY 442 (461)
T ss_pred HcCCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc---cCC
Confidence 111 10 1124666554 58999999999988665 577899999999999999887 444
Q ss_pred cCCcCCC
Q 018320 302 ALAVSQK 308 (358)
Q Consensus 302 ap~~~~~ 308 (358)
|.+++.
T Consensus 443 -Pt~~e~ 448 (461)
T PRK05249 443 -PTMAEA 448 (461)
T ss_pred -CCHHHH
Confidence 766553
No 10
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.9e-35 Score=310.29 Aligned_cols=308 Identities=19% Similarity=0.240 Sum_probs=243.9
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|..+++||.+.+++|++++++|+.++++.+. .+++++|||||++|+|+|..|+++|.+||++++.++++++.+|+++
T Consensus 107 ~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~--~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~ 184 (785)
T TIGR02374 107 YPFILPIPGADKKGVYVFRTIEDLDAIMAMAQ--RFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTA 184 (785)
T ss_pred CcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHH
Confidence 46667799999899999999999999988775 5789999999999999999999999999999999999987799999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEecccc
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ 164 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd~~~~ 164 (358)
...+.+.|+++||++++++.++++.. ++....+.+.||+++++|+||+++|.+|++++++.. +... ++|.||++||
T Consensus 185 ~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~ 261 (785)
T TIGR02374 185 GRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQ 261 (785)
T ss_pred HHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcc
Confidence 99999999999999999999999974 445567888999999999999999999999988654 5544 7899999999
Q ss_pred CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc----e
Q 018320 165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG----E 240 (358)
Q Consensus 165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~----~ 240 (358)
|++|+|||+|||+..+...+ .++.+|.+||+.+|.||+|...............++++++++++|.... +
T Consensus 262 Ts~p~IyA~GD~a~~~~~~~------gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~~ 335 (785)
T TIGR02374 262 TSDPDIYAVGECAEHNGRVY------GLVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETERTT 335 (785)
T ss_pred cCCCCEEEeeecceeCCccc------ccHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCCCcE
Confidence 99999999999998765433 3678899999999999998762223334556677899999999996542 1
Q ss_pred EEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHhhcCCc--ccCCcCCCCCCCCccccc
Q 018320 241 VVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLG--FALAVSQKPLPSTPVDGK 318 (358)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~--yap~~~~~~~~~~~~~~~ 318 (358)
.....+.....|.++++++++|+|++++|. ......+..+++.+..+.+...|..+.-. -.|..+.+..|....+|.
T Consensus 336 ~~~~~d~~~~~y~kl~~~~~rLlGavlvgd-~~~~~~L~~li~~~~~l~~~~~ll~~~~~~~~~~~~~~~~~~d~~~vC~ 414 (785)
T TIGR02374 336 SIKIYDEQKGIYKKLVLSDDKLLGAVLFGD-TSDYGRLLDMVLKQADISEDPAIIKPQISGPEAGGPGVEAMPDSEQICS 414 (785)
T ss_pred EEEEEcCCCCEEEEEEEECCEEEEEEEECC-HHHHHHHHHHHHcCCCCCcChhhhcCCCCCCCCCCcccccCCCCCEEee
Confidence 233334444458888889999999999995 45677788889988877664454411100 011122234566788887
Q ss_pred ccccccc
Q 018320 319 TVPGLVL 325 (358)
Q Consensus 319 ~~n~~~~ 325 (358)
+.|+-.+
T Consensus 415 C~~Vt~~ 421 (785)
T TIGR02374 415 CNTVTKG 421 (785)
T ss_pred CCCCcHH
Confidence 4444443
No 11
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=2.9e-36 Score=300.92 Aligned_cols=275 Identities=17% Similarity=0.254 Sum_probs=213.8
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhC---CCcEEEEeeCCcccCccCC
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMARLFT 82 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~---g~~Vtlv~~~~~~l~~~~~ 82 (358)
+|..+++||.+ .++ +.+++..+. ..+++++|||||++|+|+|..|..+ |.+|||+++.+++++. +|
T Consensus 162 ~p~~p~i~G~~--~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-~d 230 (486)
T TIGR01423 162 WPQMLGIPGIE--HCI---SSNEAFYLD-----EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-FD 230 (486)
T ss_pred CCCCCCCCChh--hee---chhhhhccc-----cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-cC
Confidence 46666788865 233 444443322 2479999999999999999877655 9999999999999986 89
Q ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh---ccccc-ccCcEE
Q 018320 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIK 158 (358)
Q Consensus 83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~~g~i~ 158 (358)
+++++.+.+.|+++||++++++.+++++.++++. ..+.+.+|+++++|.|++++|++|+++++. ..+.+ ++|.|.
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~ 309 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQ 309 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEe
Confidence 9999999999999999999999999998643432 456667888999999999999999998643 33555 678899
Q ss_pred EeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecc
Q 018320 159 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDN 237 (358)
Q Consensus 159 vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~ 237 (358)
||+++||+.|+|||+|||+..+ .++..|++||+++++||++... ...+..+|+.++.. +.++++|++
T Consensus 310 Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~--peia~vGlt 377 (486)
T TIGR01423 310 VDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSI--PPIGTCGLV 377 (486)
T ss_pred cCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCC--CceEEeeCC
Confidence 9999999999999999998754 3566799999999999998542 23555678765543 468999999
Q ss_pred cceEEEEcc-----------C-----C---CCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHh
Q 018320 238 VGEVVHYGN-----------F-----S---GTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE 295 (358)
Q Consensus 238 ~~~~~~~g~-----------~-----~---~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~ 295 (358)
+.++...++ . . ..+|.++.. ++++|||+|++|+++.+ ++.++.||+.++|++||.++.
T Consensus 378 e~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~ 457 (486)
T TIGR01423 378 EEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTI 457 (486)
T ss_pred HHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcc
Confidence 875432211 0 0 124666555 58999999999988655 678899999999999999876
Q ss_pred hcCCcccCCcCCC
Q 018320 296 TQGLGFALAVSQK 308 (358)
Q Consensus 296 ~~~~~yap~~~~~ 308 (358)
..+|.+++.
T Consensus 458 ----~~hPt~sE~ 466 (486)
T TIGR01423 458 ----GVHPTSAEE 466 (486)
T ss_pred ----cCCCCcHHH
Confidence 456777665
No 12
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=2.3e-36 Score=301.15 Aligned_cols=278 Identities=21% Similarity=0.256 Sum_probs=213.5
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|..+++||.+..++++.+++.+ +. ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus 144 ~p~~p~i~G~~~~~~~~~~~~~~---~~-----~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~ 214 (463)
T PRK06370 144 RAAIPPIPGLDEVGYLTNETIFS---LD-----ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDV 214 (463)
T ss_pred CCCCCCCCCCCcCceEcchHhhC---cc-----ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHH
Confidence 46667789987666765433221 11 14799999999999999999999999999999999999987 89999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-CCcEEecCeEEEeeCCCCChh-h-hhc-cccc-ccCcEEEe
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPNTS-L-FEG-QLTL-EKGGIKVT 160 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~vi~a~G~~p~~~-l-~~~-~~~~-~~g~i~vd 160 (358)
.+.+.+.|+++||++++++++.+++.++++....+... ++.++++|.||+|+|++|+++ + ++. .+.+ ++|+|.||
T Consensus 215 ~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd 294 (463)
T PRK06370 215 AAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD 294 (463)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeEC
Confidence 99999999999999999999999986433322223322 345799999999999999998 3 232 3555 56889999
Q ss_pred ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEEecCceEEEeecccc
Q 018320 161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDNVG 239 (358)
Q Consensus 161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~~~~G~~~~ 239 (358)
++|||+.|+|||+|||+..+ .+...|..||++||+||++. .....+..+|+. .+++..++++|+++.
T Consensus 295 ~~l~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~--~~~~p~ia~vG~te~ 362 (463)
T PRK06370 295 DQLRTTNPGIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGRRKVSDRIVPYA--TYTDPPLARVGMTEA 362 (463)
T ss_pred cCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCCCcccccCCeE--EEcCCCcEeeeCCHH
Confidence 99999999999999998754 34668999999999999975 322344456654 467889999999886
Q ss_pred eEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcC
Q 018320 240 EVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG 298 (358)
Q Consensus 240 ~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~ 298 (358)
++...| + ....+|.|+.. ++++|||+|++|+++.+ ++.++.||+.++|++||.++.
T Consensus 363 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~--- 439 (463)
T PRK06370 363 EARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAI--- 439 (463)
T ss_pred HHHHcCCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc---
Confidence 543221 1 11134666655 58999999999988655 578899999999999998866
Q ss_pred CcccCCcCCC
Q 018320 299 LGFALAVSQK 308 (358)
Q Consensus 299 ~~yap~~~~~ 308 (358)
..+|.+++.
T Consensus 440 -~~hPt~~e~ 448 (463)
T PRK06370 440 -HIHPTVSEL 448 (463)
T ss_pred -ccCCChHHH
Confidence 344656554
No 13
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=3.1e-36 Score=300.29 Aligned_cols=276 Identities=20% Similarity=0.243 Sum_probs=215.5
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|+.+++++.+.+++++.+++.+... .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus 150 ~p~~~p~~~~~~~~v~~~~~~~~~~~--------~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~ 220 (466)
T PRK07845 150 SPRILPTAEPDGERILTWRQLYDLDE--------LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADA 220 (466)
T ss_pred CCCCCCCCCCCCceEEeehhhhcccc--------cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHH
Confidence 34444455555566776655433221 3689999999999999999999999999999999999997 79999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--h-ccccc-ccCcEEEec
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG 161 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~~~~-~~g~i~vd~ 161 (358)
...+.+.|+++||++++++++++++.++++ ..+.+.+|+++++|.|++++|++||++++ + ..+.+ ++|+|.||+
T Consensus 221 ~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~ 298 (466)
T PRK07845 221 AEVLEEVFARRGMTVLKRSRAESVERTGDG--VVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDR 298 (466)
T ss_pred HHHHHHHHHHCCcEEEcCCEEEEEEEeCCE--EEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECC
Confidence 999999999999999999999999763333 34667788999999999999999999853 3 33665 568899999
Q ss_pred cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecccce
Q 018320 162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGE 240 (358)
Q Consensus 162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~ 240 (358)
++||+.|+|||+|||+..+ +++..|..||+.|+.|+++... ...+..+|+.+ +.++.++++|+++.+
T Consensus 299 ~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~v--f~~p~~a~vGlte~~ 366 (466)
T PRK07845 299 VSRTSVPGIYAAGDCTGVL----------PLASVAAMQGRIAMYHALGEAVSPLRLKTVASNV--FTRPEIATVGVSQAA 366 (466)
T ss_pred CcccCCCCEEEEeeccCCc----------cchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEE--eCCCcceeecCCHHH
Confidence 9999999999999999753 4678899999999999998642 23445566533 236889999998754
Q ss_pred EEEEc-----------cC-------CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCC
Q 018320 241 VVHYG-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGL 299 (358)
Q Consensus 241 ~~~~g-----------~~-------~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~ 299 (358)
+...+ +. ...+|.|+.. ++|+|||+|++|+++.+ ++.++.||++++|++||.++ +
T Consensus 367 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~----~ 442 (466)
T PRK07845 367 IDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQT----F 442 (466)
T ss_pred HHhCCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcC----c
Confidence 32111 10 1123666555 58999999999988665 57889999999999999874 4
Q ss_pred cccCCcCCC
Q 018320 300 GFALAVSQK 308 (358)
Q Consensus 300 ~yap~~~~~ 308 (358)
.++|++++.
T Consensus 443 ~~hPt~~e~ 451 (466)
T PRK07845 443 TVYPSLSGS 451 (466)
T ss_pred CCCCCHHHH
Confidence 688888764
No 14
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=3.4e-36 Score=298.77 Aligned_cols=262 Identities=23% Similarity=0.322 Sum_probs=210.6
Q ss_pred ecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEc
Q 018320 23 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 102 (358)
Q Consensus 23 l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~ 102 (358)
+.+.+++.++.+ .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.+ +.||++++
T Consensus 156 ~~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~-~~gI~i~~ 228 (452)
T TIGR03452 156 YHTNEDIMRLPE-----LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA-KKKWDIRL 228 (452)
T ss_pred EEcHHHHHhhhh-----cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH-hcCCEEEe
Confidence 456777776643 3789999999999999999999999999999999998886 8999998887755 46899999
Q ss_pred CCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh---ccccc-ccCcEEEeccccCCCCcEEEEccccc
Q 018320 103 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAA 178 (358)
Q Consensus 103 ~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~ 178 (358)
++++++++.++++ ..+.+.+|+++++|.|++++|++|+++++. .++++ ++|+|.||+++||+.|+|||+|||+.
T Consensus 229 ~~~V~~i~~~~~~--v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~ 306 (452)
T TIGR03452 229 GRNVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSS 306 (452)
T ss_pred CCEEEEEEEcCCe--EEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccC
Confidence 9999999864333 346667788999999999999999998753 23566 57889999999999999999999997
Q ss_pred ccccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecccceEEEEc--------c--
Q 018320 179 FPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG--------N-- 246 (358)
Q Consensus 179 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g--------~-- 246 (358)
.+ ++...|.+||+++|+||++... ...+..+|+.+ ++++.++++|+++.++...| .
T Consensus 307 ~~----------~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i--~t~p~ia~vGlte~ea~~~g~~~~~~~~~~~ 374 (452)
T TIGR03452 307 PY----------QLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAV--FTHPQIATVGLTEQEAREAGHDITVKIQNYG 374 (452)
T ss_pred cc----------cChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEE--ECCCCeeeeeCCHHHHHhcCCCeEEEEecCC
Confidence 54 3566799999999999998642 34566788764 47889999999987553221 0
Q ss_pred --------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320 247 --------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 308 (358)
Q Consensus 247 --------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 308 (358)
.+..+|.|+.. ++++|||+|++|+++.+ ++.++.||+.++|++||.++. +.++|.+++.
T Consensus 375 ~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~hPt~~e~ 444 (452)
T TIGR03452 375 DVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQ---YWIHPALPEV 444 (452)
T ss_pred chhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCC---cccCCchHHH
Confidence 11233666555 58999999999988665 578899999999999998866 5678888764
No 15
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=5.4e-36 Score=297.23 Aligned_cols=251 Identities=20% Similarity=0.259 Sum_probs=202.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
.+++++|||||++|+|+|..|++.|.+||++++.+++++. +|+++.+.+.+.|+++||++++++.+++++.++++. ..
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~ 242 (450)
T TIGR01421 165 LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LV 242 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EE
Confidence 3789999999999999999999999999999999999986 899999999999999999999999999998643332 34
Q ss_pred EEcCCC-cEEecCeEEEeeCCCCChhhh--h-ccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHH
Q 018320 120 VNLRDG-NRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194 (358)
Q Consensus 120 v~~~~g-~~i~~D~vi~a~G~~p~~~l~--~-~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~ 194 (358)
+.+++| +++++|.|++++|++||++++ + ..+.+ ++|+|.||+++||+.|+|||+|||+..+ ..+.
T Consensus 243 v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~----------~~~~ 312 (450)
T TIGR01421 243 IHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKV----------ELTP 312 (450)
T ss_pred EEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCc----------ccHH
Confidence 667777 579999999999999999853 3 23555 5788999999999999999999999754 3467
Q ss_pred HHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecccceEEEE-cc-------------------CCCCce
Q 018320 195 SARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY-GN-------------------FSGTTF 252 (358)
Q Consensus 195 ~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-g~-------------------~~~~~~ 252 (358)
.|.+||+.+|+||++... ...+..+|+ ..+++..++++|+++.++... +. ....+|
T Consensus 313 ~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 390 (450)
T TIGR01421 313 VAIAAGRKLSERLFNGKTDDKLDYNNVPT--VVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCR 390 (450)
T ss_pred HHHHHHHHHHHHHhcCCCCCccCcccCCe--EEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCceE
Confidence 899999999999997532 134556776 445677899999998654322 10 011236
Q ss_pred EEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320 253 GAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 308 (358)
Q Consensus 253 ~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 308 (358)
.++.. ++|+|||+|++|+++.+ ++.++.||++++|++||.++. ..+|.+++.
T Consensus 391 ~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~ 445 (450)
T TIGR01421 391 MKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTV----AIHPTSSEE 445 (450)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc----cCCCChHHH
Confidence 55554 58999999999988665 578899999999999998765 456777654
No 16
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=4.8e-36 Score=302.71 Aligned_cols=284 Identities=18% Similarity=0.220 Sum_probs=216.3
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|..+++||.+ .++ +.++...+ . .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus 213 ~P~~P~IpG~~--~v~---ts~~~~~l----~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-~d~~i 280 (561)
T PTZ00058 213 KPIFPDVKGKE--FTI---SSDDFFKI----K--EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-FDETI 280 (561)
T ss_pred CCCCCCCCCce--eEE---EHHHHhhc----c--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-CCHHH
Confidence 45666788864 343 23333222 2 3799999999999999999999999999999999999986 89999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-CcEEecCeEEEeeCCCCChhhhhcc---cccccCcEEEec
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIKVTG 161 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~vi~a~G~~p~~~l~~~~---~~~~~g~i~vd~ 161 (358)
.+.+.+.|+++||++++++.+.+++.++++.+. +.+.+ ++++++|.|++++|++|+++++... +..++|+|.||+
T Consensus 281 ~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe 359 (561)
T PTZ00058 281 INELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDD 359 (561)
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECc
Confidence 999999999999999999999999864333332 33334 4579999999999999999876422 233678899999
Q ss_pred cccCCCCcEEEEccccccccc-----------------------ccCccc-ccccHHHHHHHHHHHHHHHcCCCC-CCCC
Q 018320 162 RLQSSNSSVYAVGDVAAFPLK-----------------------LLGETR-RLEHVDSARKSAKHAVAAIMEPDK-TDKF 216 (358)
Q Consensus 162 ~~~t~~~~VyAiGD~~~~~~~-----------------------~~g~~~-~~~~~~~A~~~g~~aa~~i~g~~~-~~~~ 216 (358)
+|||+.|+|||+|||+..+.. .++++. ..+++..|.+||+++|+||+|... ..++
T Consensus 360 ~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~ 439 (561)
T PTZ00058 360 NQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNY 439 (561)
T ss_pred CCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCC
Confidence 999999999999999984321 334443 367889999999999999998632 2345
Q ss_pred CCCCeEEEEecCceEEEeecccceEEEE-c---------cC--------------CCCceEEEEe--eCCeEEEEEEeCC
Q 018320 217 DYLPFFYSRVFTLSWQFYGDNVGEVVHY-G---------NF--------------SGTTFGAYWV--NKGRLVGSFLEGG 270 (358)
Q Consensus 217 ~~~p~~~~~~~~~~~~~~G~~~~~~~~~-g---------~~--------------~~~~~~~~~~--~~g~ilGa~~vg~ 270 (358)
..+|+.++ .++.++++|+++.++... | .. ...++.+++. ++|+|||+|++|+
T Consensus 440 ~~ip~~vf--t~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ILG~~ivG~ 517 (561)
T PTZ00058 440 KLIPSVIF--SHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLHIVGL 517 (561)
T ss_pred CCCCeEEe--CCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEEEEEEECC
Confidence 66787533 446899999988654322 1 00 0123666554 5899999999998
Q ss_pred CHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320 271 TKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 308 (358)
Q Consensus 271 ~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 308 (358)
++.+ ++.++.||++++|++||.++. ..+|.+++.
T Consensus 518 ~a~elI~~~a~ai~~~~t~~dl~~~~----~~hPt~~e~ 552 (561)
T PTZ00058 518 NADEILQGFAVALKMNATKADFDETI----PIHPTAAEE 552 (561)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHhhcc----cCCCChHHH
Confidence 8665 578899999999999998865 456776654
No 17
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.7e-36 Score=299.98 Aligned_cols=249 Identities=18% Similarity=0.230 Sum_probs=202.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
.+++++|||||++|+|+|..|+++|.+||++++.+++++. +|+++++.+.+.|+++ |++++++.+++++.++++ ..
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~--~~ 248 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG--IY 248 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE--EE
Confidence 4789999999999999999999999999999999999997 8999999999999988 999999999999864333 23
Q ss_pred EEcCC--C--cEEecCeEEEeeCCCCChhhhh---ccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccc
Q 018320 120 VNLRD--G--NRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE 191 (358)
Q Consensus 120 v~~~~--g--~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~ 191 (358)
+++.+ + +++++|.|++++|++||++++. ..+.+ ++|+|.||++|||+.|+|||+|||+..+ .
T Consensus 249 v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~----------~ 318 (471)
T PRK06467 249 VTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQP----------M 318 (471)
T ss_pred EEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCc----------c
Confidence 44433 2 4699999999999999998542 23555 5788999999999999999999998643 3
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCceE
Q 018320 192 HVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTTFG 253 (358)
Q Consensus 192 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~~~ 253 (358)
++..|.+||+.||.+|++.....++..+|+.+ ++++.++++|+++.++...| . ....+|.
T Consensus 319 la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~~--~~~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 396 (471)
T PRK06467 319 LAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIA--YTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMT 396 (471)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--ECCCceeEEECCHHHHHhcCCCeEEEEEecCcchhhhhCCCCceEE
Confidence 57789999999999999865445566778754 78999999999887543222 0 0112366
Q ss_pred EEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320 254 AYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 308 (358)
Q Consensus 254 ~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 308 (358)
++.+ ++++|||+|++|+++.+ ++.++.||+.++|++||.++. .|+|++++.
T Consensus 397 kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~----~~hPt~~e~ 450 (471)
T PRK06467 397 KLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTI----HAHPTLHES 450 (471)
T ss_pred EEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc----cCCCChHHH
Confidence 6555 57999999999988665 578899999999999998764 778888864
No 18
>PLN02507 glutathione reductase
Probab=100.00 E-value=9.7e-36 Score=298.52 Aligned_cols=274 Identities=19% Similarity=0.271 Sum_probs=212.6
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|..+++||.+. . .+.+++..+.. .+++++|||+|++|+|+|..|++.|.+||++++.+++++. +|+++
T Consensus 178 ~p~~p~ipG~~~--~---~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~ 246 (499)
T PLN02507 178 RAQRPNIPGKEL--A---ITSDEALSLEE-----LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEM 246 (499)
T ss_pred CCCCCCCCCccc--e---echHHhhhhhh-----cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHH
Confidence 345556787642 2 24455555432 3689999999999999999999999999999999998886 89999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--hc-cccc-ccCcEEEec
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTG 161 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~-~~~~-~~g~i~vd~ 161 (358)
.+.+.+.|+++||+++++++|++++.++++ ..+.+.+|+++++|.|++++|++|+++++ +. .+.+ ++|+|.||+
T Consensus 247 ~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~ 324 (499)
T PLN02507 247 RAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE 324 (499)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC
Confidence 999999999999999999999999863333 34667788899999999999999999863 33 3555 568899999
Q ss_pred cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEEeecccce
Q 018320 162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGE 240 (358)
Q Consensus 162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~ 240 (358)
++||+.|+|||+|||+... .++..|.+||+++++||++.... ..+..+|+.++ ....++++|+++.+
T Consensus 325 ~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if--~~p~ia~vGlte~e 392 (499)
T PLN02507 325 YSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVF--CIPPLSVVGLSEEE 392 (499)
T ss_pred CCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEE--CCCccEEEeCCHHH
Confidence 9999999999999999643 35678999999999999975431 23445675433 23478999998765
Q ss_pred EEEE-c--------cC----------CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcC
Q 018320 241 VVHY-G--------NF----------SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG 298 (358)
Q Consensus 241 ~~~~-g--------~~----------~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~ 298 (358)
+... + .. ...+|.|+.+ ++++|||+|++|+++.+ ++.++.||+.++|++||.++.
T Consensus 393 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~--- 469 (499)
T PLN02507 393 AVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTV--- 469 (499)
T ss_pred HHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcC---
Confidence 4322 1 00 1123666554 58999999999988654 678899999999999998754
Q ss_pred CcccCCcCCC
Q 018320 299 LGFALAVSQK 308 (358)
Q Consensus 299 ~~yap~~~~~ 308 (358)
..+|.+++.
T Consensus 470 -~~hPt~~E~ 478 (499)
T PLN02507 470 -GIHPSAAEE 478 (499)
T ss_pred -cCCCChHHH
Confidence 567777765
No 19
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=5.2e-36 Score=298.72 Aligned_cols=267 Identities=24% Similarity=0.277 Sum_probs=208.5
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|..+++||.+..++++. +++..+. ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus 139 ~p~~p~i~G~~~~~~~~~---~~~~~~~-----~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~ 209 (463)
T TIGR02053 139 RPAIPPIPGLKEAGYLTS---EEALALD-----RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEI 209 (463)
T ss_pred CCCCCCCCCcccCceECc---hhhhCcc-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHH
Confidence 466667888876665543 2332221 13689999999999999999999999999999999999987 89999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---CCcEEecCeEEEeeCCCCChh-h-hhc-cccc-ccCcEE
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGNRLPTDMVVVGIGIRPNTS-L-FEG-QLTL-EKGGIK 158 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~~i~~D~vi~a~G~~p~~~-l-~~~-~~~~-~~g~i~ 158 (358)
...+++.|++.||+++++++|++++.++++ ..+.+. +++++++|.|++|+|++|+++ + ++. .+.. ++|+|.
T Consensus 210 ~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~ 287 (463)
T TIGR02053 210 SAAVEEALAEEGIEVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGIL 287 (463)
T ss_pred HHHHHHHHHHcCCEEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEe
Confidence 999999999999999999999999863333 233332 236799999999999999998 3 332 3555 578899
Q ss_pred EeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEEecCceEEEeecc
Q 018320 159 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDN 237 (358)
Q Consensus 159 vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~~~~G~~ 237 (358)
||++|||+.|+|||+|||+..+ .++..|..||+.||.||++. ....++..+|. ..++++.++++|++
T Consensus 288 vd~~~~Ts~~~VyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~~a~vGlt 355 (463)
T TIGR02053 288 VDETLRTSNPGIYAAGDVTGGL----------QLEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPAVASVGLT 355 (463)
T ss_pred ECCCccCCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCceEEEeCC
Confidence 9999999999999999999753 35778999999999999986 43334455674 45788999999998
Q ss_pred cceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHh
Q 018320 238 VGEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE 295 (358)
Q Consensus 238 ~~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~ 295 (358)
+.++...| . .+..+|.++.. ++++|||+|++|+++.+ ++.++.||+.++|++||.++.
T Consensus 356 e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~ 434 (463)
T TIGR02053 356 EAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTL 434 (463)
T ss_pred HHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc
Confidence 86542211 0 11234666655 58999999999988665 578899999999999998765
No 20
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=9.1e-36 Score=295.51 Aligned_cols=274 Identities=20% Similarity=0.264 Sum_probs=213.2
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|..+++||.+. .+ +.+++..+. ..+++++|||+|++|+|+|..|++.|.+||++++.+.+++. +++++
T Consensus 141 ~p~~p~i~G~~~--~~---~~~~~~~l~-----~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~ 209 (446)
T TIGR01424 141 RPQKPNLPGHEL--GI---TSNEAFHLP-----TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDM 209 (446)
T ss_pred cCCCCCCCCccc--ee---chHHhhccc-----ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHH
Confidence 455566888642 22 333443332 14789999999999999999999999999999999998886 89999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--h-ccccc-ccCcEEEec
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG 161 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~~~~-~~g~i~vd~ 161 (358)
.+.+.+.|+++||++++++++++++.++++ ..+.+.+|+++++|.|++|+|++|+++.+ + ..+++ ++|+|.||+
T Consensus 210 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~ 287 (446)
T TIGR01424 210 RALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDE 287 (446)
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCC
Confidence 999999999999999999999999864333 34666788899999999999999999853 2 23555 568899999
Q ss_pred cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEEEecCceEEEeecccce
Q 018320 162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD-KTDKFDYLPFFYSRVFTLSWQFYGDNVGE 240 (358)
Q Consensus 162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~~~~~~G~~~~~ 240 (358)
++||+.|+|||+|||+..+ +++..|.+||+.|++||++.. ...++..+|+.++. .+.++++|+++.+
T Consensus 288 ~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~--~p~ia~vG~te~~ 355 (446)
T TIGR01424 288 YSRTSIPSIYAVGDVTDRI----------NLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFS--QPPLGTVGLTEEE 355 (446)
T ss_pred CCccCCCCEEEeeccCCCc----------cchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeC--CchhEEEECCHHH
Confidence 9999999999999998643 457789999999999999854 22455678876543 3478999998765
Q ss_pred EEEEc------------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcC
Q 018320 241 VVHYG------------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG 298 (358)
Q Consensus 241 ~~~~g------------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~ 298 (358)
+...+ . ....+|.|+.. ++++|||+|++|+++.+ ++.++.||++++|++||.++.
T Consensus 356 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~--- 432 (446)
T TIGR01424 356 AREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTV--- 432 (446)
T ss_pred HHhhcCCCEEEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcc---
Confidence 43321 0 01123666555 58999999999988665 578899999999999998855
Q ss_pred CcccCCcCCC
Q 018320 299 LGFALAVSQK 308 (358)
Q Consensus 299 ~~yap~~~~~ 308 (358)
..+|.+++.
T Consensus 433 -~~hPt~~e~ 441 (446)
T TIGR01424 433 -GIHPSSAEE 441 (446)
T ss_pred -ccCCChHHH
Confidence 566777654
No 21
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-35 Score=294.03 Aligned_cols=275 Identities=19% Similarity=0.228 Sum_probs=212.1
Q ss_pred CCccCCCCCCC-CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHH
Q 018320 6 KLEEFGLSGSD-AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 84 (358)
Q Consensus 6 ~P~~~~ipG~~-~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~ 84 (358)
+|..+++||.+ .+++++.. .+.+. . ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. ++++
T Consensus 130 ~p~~p~i~G~~~~~~v~~~~------~~~~~-~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~ 200 (441)
T PRK08010 130 QTVVPPIPGITTTPGVYDST------GLLNL-K-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRD 200 (441)
T ss_pred cCCCCCCCCccCCCCEEChh------Hhhcc-c-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHH
Confidence 35556788864 46676432 22221 1 14789999999999999999999999999999999999987 7999
Q ss_pred HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh---ccccc-ccCcEEEe
Q 018320 85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVT 160 (358)
Q Consensus 85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~~g~i~vd 160 (358)
+.+.+.+.|+++||++++++++++++.+ ++.+ .+.+.++ ++++|.|++++|++||++++. ..+.+ ++|+|.||
T Consensus 201 ~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd 277 (441)
T PRK08010 201 IADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVD 277 (441)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEEC
Confidence 9999999999999999999999999863 3332 3444444 689999999999999998542 23555 56889999
Q ss_pred ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEEecCceEEEeeccc
Q 018320 161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNV 238 (358)
Q Consensus 161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~ 238 (358)
+++||+.|+|||+|||+..+. +...|..||+.+++||+|.... ..+..+|+ ..++++.++++|+++
T Consensus 278 ~~~~Ts~~~IyA~GD~~~~~~----------~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~--~~~~~p~ia~vGlte 345 (441)
T PRK08010 278 KYLHTTADNIWAMGDVTGGLQ----------FTYISLDDYRIVRDELLGEGKRSTDDRKNVPY--SVFMTPPLSRVGMTE 345 (441)
T ss_pred CCcccCCCCEEEeeecCCCcc----------chhHHHHHHHHHHHHHcCCCCcccCccCCCCE--EEECCCCceeeeCCH
Confidence 999999999999999998653 4557888999999999985221 23445664 457899999999998
Q ss_pred ceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhc
Q 018320 239 GEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQ 297 (358)
Q Consensus 239 ~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~ 297 (358)
.++...| + .+..+|.|+.. ++|+|||+|++|+++.+ ++.++.||++++|++||.+.
T Consensus 346 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~--- 422 (441)
T PRK08010 346 EQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQ--- 422 (441)
T ss_pred HHHHHcCCCeEEEEEecCcChhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc---
Confidence 6543221 1 11123666554 58999999999988655 67889999999999998854
Q ss_pred CCcccCCcCCC
Q 018320 298 GLGFALAVSQK 308 (358)
Q Consensus 298 ~~~yap~~~~~ 308 (358)
+.++|.+++.
T Consensus 423 -~~~hPt~~e~ 432 (441)
T PRK08010 423 -IFTHPSMSES 432 (441)
T ss_pred -cccCCchHHH
Confidence 4678888764
No 22
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-35 Score=295.93 Aligned_cols=272 Identities=24% Similarity=0.307 Sum_probs=211.3
Q ss_pred CCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHH
Q 018320 12 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEE 91 (358)
Q Consensus 12 ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~ 91 (358)
+||.+.++. .+.+.+++.++.. .+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+
T Consensus 149 ~pg~~~~~~-~v~~~~~~~~~~~-----~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~ 221 (462)
T PRK06416 149 LPGIEIDGR-VIWTSDEALNLDE-----VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAER 221 (462)
T ss_pred CCCCCCCCC-eEEcchHhhCccc-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHH
Confidence 355544442 2234455544321 4689999999999999999999999999999999999986 89999999999
Q ss_pred HHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC---cEEecCeEEEeeCCCCChhhh---hcccccccCcEEEeccccC
Q 018320 92 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF---EGQLTLEKGGIKVTGRLQS 165 (358)
Q Consensus 92 ~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~l~---~~~~~~~~g~i~vd~~~~t 165 (358)
.|+++||++++++++++++.+++ . ..+.+.++ +++++|.||+++|++|+++++ ...+..++|+|.||+++||
T Consensus 222 ~l~~~gV~i~~~~~V~~i~~~~~-~-v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t 299 (462)
T PRK06416 222 ALKKRGIKIKTGAKAKKVEQTDD-G-VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRT 299 (462)
T ss_pred HHHHcCCEEEeCCEEEEEEEeCC-E-EEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCcc
Confidence 99999999999999999986333 2 34555555 679999999999999999875 2235455788999999999
Q ss_pred CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc
Q 018320 166 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG 245 (358)
Q Consensus 166 ~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g 245 (358)
+.|+|||+|||+..+ +++..|..||+.+|.||++.....++..+| ...++++.++++|+++.++...|
T Consensus 300 ~~~~VyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~--~~~~~~~~~a~vG~te~~a~~~g 367 (462)
T PRK06416 300 NVPNIYAIGDIVGGP----------MLAHKASAEGIIAAEAIAGNPHPIDYRGIP--AVTYTHPEVASVGLTEAKAKEEG 367 (462)
T ss_pred CCCCEEEeeecCCCc----------chHHHHHHHHHHHHHHHcCCCCCCCCCCCC--eEEECCCceEEEeCCHHHHHhcC
Confidence 999999999999743 457789999999999999865323333444 45679999999999986543221
Q ss_pred -----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCC
Q 018320 246 -----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALA 304 (358)
Q Consensus 246 -----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~ 304 (358)
. ....+|.++.+ ++++|||+|++|+++.+ ++.++.||+.++|++||.++. .++|.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt 443 (462)
T PRK06416 368 FDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTI----HPHPT 443 (462)
T ss_pred CCeEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----cCCCC
Confidence 0 01123666554 68999999999988655 678899999999999998865 56777
Q ss_pred cCCC
Q 018320 305 VSQK 308 (358)
Q Consensus 305 ~~~~ 308 (358)
+++.
T Consensus 444 ~~e~ 447 (462)
T PRK06416 444 LSEA 447 (462)
T ss_pred HHHH
Confidence 7654
No 23
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.4e-35 Score=295.78 Aligned_cols=274 Identities=21% Similarity=0.253 Sum_probs=212.7
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|+.+++||.+...+++ .+++..+. ..+++++|||+|++|+|+|..|+++|.+||++++ +++++. +++++
T Consensus 151 ~p~~p~i~G~~~~~~~~---~~~~~~l~-----~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~ 220 (468)
T PRK14694 151 RPAEPPVPGLAETPYLT---STSALELD-----HIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAV 220 (468)
T ss_pred CCCCCCCCCCCCCceEc---chhhhchh-----cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHH
Confidence 56667788876443332 23443332 1478999999999999999999999999999987 467775 89999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh---cccccccCcEEEecc
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTLEKGGIKVTGR 162 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~~~~~~g~i~vd~~ 162 (358)
.+.+++.|+++||++++++.+++++.+ ++. ..+.+. +.++++|.|++++|++|+++++. ..+..++|.|.||++
T Consensus 221 ~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~-~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~ 297 (468)
T PRK14694 221 GEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETN-AGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEH 297 (468)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEEC-CCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCC
Confidence 999999999999999999999999863 332 234444 44799999999999999998752 224456788999999
Q ss_pred ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE
Q 018320 163 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV 242 (358)
Q Consensus 163 ~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~ 242 (358)
++|+.|+|||+|||+..+. .+..|..||+.||.||++.....++..+|.+ .++++.++++|+++.++.
T Consensus 298 ~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~--~~~~p~~a~vGlte~~a~ 365 (468)
T PRK14694 298 LQTTVSGIYAAGDCTDQPQ----------FVYVAAAGGSRAAINMTGGDASLDLSAMPEV--IFTDPQVATVGLSEAEAQ 365 (468)
T ss_pred cccCCCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHhcCCCcccccCCCCeE--EECCCCeEEeeCCHHHHH
Confidence 9999999999999997643 4667889999999999986544455667765 478999999999986543
Q ss_pred EEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcc
Q 018320 243 HYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGF 301 (358)
Q Consensus 243 ~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~y 301 (358)
..| ..+..+|.|+.. ++|+|||+|++|+++.+ ++.++.||++++|++||.++. ..
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~ 441 (468)
T PRK14694 366 AQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADEL----FP 441 (468)
T ss_pred HcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccc----cC
Confidence 221 011234766654 58999999999987655 578899999999999999877 35
Q ss_pred cCCcCCC
Q 018320 302 ALAVSQK 308 (358)
Q Consensus 302 ap~~~~~ 308 (358)
+|.+++.
T Consensus 442 hPt~~e~ 448 (468)
T PRK14694 442 YLTMVEG 448 (468)
T ss_pred CCchHHH
Confidence 6777664
No 24
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.4e-35 Score=295.21 Aligned_cols=275 Identities=18% Similarity=0.194 Sum_probs=212.2
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|..+++++.+.+++++. +++..+. . .+++++|||||++|+|+|..|.++|.+||++++.+++++. +++++
T Consensus 143 ~p~~~p~~~~~~~~v~~~---~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~ 213 (458)
T PRK06912 143 EPTELPFAPFDGKWIINS---KHAMSLP----S-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDI 213 (458)
T ss_pred CCCCCCCCCCCCCeEEcc---hHHhCcc----c-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHH
Confidence 344555677655555532 3333322 1 3689999999999999999999999999999999999987 79999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCChhhh--h-cccccccCcEEEe
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLF--E-GQLTLEKGGIKVT 160 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~l~--~-~~~~~~~g~i~vd 160 (358)
.+.+.+.|+++||++++++++++++.+ +.. ..+.. +| .++++|.|++++|++|+++.+ + ..+...+++|.||
T Consensus 214 ~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~-v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd 290 (458)
T PRK06912 214 AHILREKLENDGVKIFTGAALKGLNSY-KKQ-ALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVN 290 (458)
T ss_pred HHHHHHHHHHCCCEEEECCEEEEEEEc-CCE-EEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeC
Confidence 999999999999999999999999753 222 22332 34 369999999999999999754 2 2355545569999
Q ss_pred ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccce
Q 018320 161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE 240 (358)
Q Consensus 161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~ 240 (358)
+++||+.|+|||+|||+..+ +++..|.+||+.||.+|+|.....++..+|..+ +++..++++|+++.+
T Consensus 291 ~~~~ts~~~VyA~GD~~~~~----------~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v--~~~p~~a~vGlte~~ 358 (458)
T PRK06912 291 EHMQTNVPHIYACGDVIGGI----------QLAHVAFHEGTTAALHASGEDVKVNYHAVPRCI--YTSPEIASVGLTEKQ 358 (458)
T ss_pred CCeecCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEE--ecCchhEEeeCCHHH
Confidence 99999999999999998643 467789999999999999865434456788754 568899999998864
Q ss_pred EEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCC
Q 018320 241 VVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGL 299 (358)
Q Consensus 241 ~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~ 299 (358)
+...+ . ....+|.++.+ ++++|||+|++|+++.+ ++.++.||++++|++||.++.
T Consensus 359 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---- 434 (458)
T PRK06912 359 AREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFI---- 434 (458)
T ss_pred HHHCCCCeEEEEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----
Confidence 42211 0 01123666555 58999999999988665 678899999999999988764
Q ss_pred cccCCcCCC
Q 018320 300 GFALAVSQK 308 (358)
Q Consensus 300 ~yap~~~~~ 308 (358)
.|+|+|++.
T Consensus 435 ~~hPt~~e~ 443 (458)
T PRK06912 435 AAHPTLSEA 443 (458)
T ss_pred ccCCCHHHH
Confidence 788998875
No 25
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-35 Score=301.73 Aligned_cols=277 Identities=18% Similarity=0.198 Sum_probs=210.0
Q ss_pred CccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHH
Q 018320 7 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA 86 (358)
Q Consensus 7 P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~ 86 (358)
|..+++++.+.+++++. +++..+.. .+++++|||||++|+|+|..|+++|.+||++++.+++++. +|+++.
T Consensus 286 P~~P~~~~~~~~~V~ts---~d~~~l~~-----lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-~d~eis 356 (659)
T PTZ00153 286 PNIPDNIEVDQKSVFTS---DTAVKLEG-----LQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-LDADVA 356 (659)
T ss_pred CCCCCCCCCCCCcEEeh---HHhhhhhh-----cCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-CCHHHH
Confidence 33334455555567753 55554432 3789999999999999999999999999999999999996 899999
Q ss_pred HHHHHHH-HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-------C--------cEEecCeEEEeeCCCCChhhhh--c
Q 018320 87 SYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-------G--------NRLPTDMVVVGIGIRPNTSLFE--G 148 (358)
Q Consensus 87 ~~~~~~l-~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-------g--------~~i~~D~vi~a~G~~p~~~l~~--~ 148 (358)
+.+.+.+ +++||++++++.|++++.++++....+.+.+ + +++++|.|++|+|++||++.+. .
T Consensus 357 ~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~ 436 (659)
T PTZ00153 357 KYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDK 436 (659)
T ss_pred HHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchh
Confidence 9998876 6799999999999999864433323343321 1 3799999999999999998652 2
Q ss_pred -ccccccCcEEEeccccCC------CCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC-----------
Q 018320 149 -QLTLEKGGIKVTGRLQSS------NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP----------- 210 (358)
Q Consensus 149 -~~~~~~g~i~vd~~~~t~------~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~----------- 210 (358)
.+..++|+|.||++|||+ +|+|||+|||+..+ +++..|.+||+.|+++|++.
T Consensus 437 ~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~----------~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~ 506 (659)
T PTZ00153 437 LKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ----------MLAHTASHQALKVVDWIEGKGKENVNINVEN 506 (659)
T ss_pred cCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc----------cCHHHHHHHHHHHHHHHcCCCcccccccccc
Confidence 355566889999999997 69999999998543 46778999999999999986
Q ss_pred --CCCCCCCCCCeEEEEecCceEEEeecccceEEEEc-------------cC-------C--------------------
Q 018320 211 --DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-------------NF-------S-------------------- 248 (358)
Q Consensus 211 --~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-------------~~-------~-------------------- 248 (358)
.....+..+|. ..++++.++++|+++.++...+ .. +
T Consensus 507 ~~~~~~~~~~iP~--~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~ 584 (659)
T PTZ00153 507 WASKPIIYKNIPS--VCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTV 584 (659)
T ss_pred ccccccccCcCCE--EEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhccccccccccccccccccccccc
Confidence 22233455664 4467889999999886543222 00 0
Q ss_pred --CCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320 249 --GTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 308 (358)
Q Consensus 249 --~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 308 (358)
..+|.|+++ ++++|||+|++|+++.+ |+.++.||++++|++||.++. .++|.+++.
T Consensus 585 ~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~----~~hPT~sE~ 645 (659)
T PTZ00153 585 DNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMV----HSHPTISEV 645 (659)
T ss_pred cCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----CCCCChHHH
Confidence 234666555 58999999999998766 577899999999999998865 356766654
No 26
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=9.2e-36 Score=295.52 Aligned_cols=310 Identities=22% Similarity=0.271 Sum_probs=261.9
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
.|-.+++||.++++||.+|+++|...+.+.-+ ..++.+|||||..|+|+|..|.+.|.+|++++..+.+|.+++|+..
T Consensus 112 ~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar--~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~a 189 (793)
T COG1251 112 YPFILPIPGSDLPGVFVYRTIDDVEAMLDCAR--NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTA 189 (793)
T ss_pred cccccCCCCCCCCCeeEEecHHHHHHHHHHHh--ccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHH
Confidence 35555699999999999999999999988843 4567999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcccccccCcEEEeccccC
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQS 165 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i~vd~~~~t 165 (358)
...+++.++++|++++++...+++.. ++++..+.++||+.+++|.|++|+|.+||+++........+.+|.||++|||
T Consensus 190 g~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvvnd~mqT 267 (793)
T COG1251 190 GRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDYMQT 267 (793)
T ss_pred HHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCCCeeecccccc
Confidence 99999999999999999998888863 6677899999999999999999999999999998763333348999999999
Q ss_pred CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeeccc----ceE
Q 018320 166 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNV----GEV 241 (358)
Q Consensus 166 ~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~----~~~ 241 (358)
|+|+|||+|+|+++....+ .+++++.+|++.+|+++++...+.....+++...++.+.++.+.|.-. .+.
T Consensus 268 sdpdIYAvGEcae~~g~~y------GLVaP~yeq~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~ 341 (793)
T COG1251 268 SDPDIYAVGECAEHRGKVY------GLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQETEGAES 341 (793)
T ss_pred cCCCeeehhhHHHhcCccc------eehhHHHHHHHHHHHHhccCcccccccccchhhhcccccceeeccchhhcCCCce
Confidence 9999999999999987665 478899999999999999987544566677777888999999888643 345
Q ss_pred EEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCCCCCCCcccccccc
Q 018320 242 VHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVP 321 (358)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~~~~~~~~~~~~~n 321 (358)
+.+.|.....|.++.+++++|+|+.++|. ...-..+-.+|..+.+++++.+..-....+.|+-+.+..|.+..+|. ||
T Consensus 342 iv~~D~~~~iYKrlvL~dd~IvgavL~GD-t~d~~~l~~li~~~~~~se~r~~li~~~~~~~~~~v~~lpd~~~IC~-Cn 419 (793)
T COG1251 342 IVFRDEQRGIYKKLVLKDDKIVGAVLYGD-TSDGGWLLDLILKGADISEIRDTLILPQGSAPSLGVAALPDSAQICG-CN 419 (793)
T ss_pred EEEecccccceeEEEEeCCeEEEEEEEee-cccchHHHHHHhcCCCccccchhhccccccCCccchhhCCCCCeeec-CC
Confidence 66666665669999999999999999995 44456677889999999887765544444578888888999998887 55
Q ss_pred ccccCc
Q 018320 322 GLVLGK 327 (358)
Q Consensus 322 ~~~~~~ 327 (358)
.++...
T Consensus 420 ~VtKG~ 425 (793)
T COG1251 420 GVTKGA 425 (793)
T ss_pred CccHHH
Confidence 555433
No 27
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=2.4e-35 Score=292.98 Aligned_cols=275 Identities=20% Similarity=0.237 Sum_probs=212.8
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|..+++||.+ .++ +.+++..+ . ..+++++|||+|++|+|+|..|++.|.+||++++++.+++. +++++
T Consensus 142 ~p~~p~i~g~~--~~~---~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~ 210 (450)
T PRK06116 142 RPSIPDIPGAE--YGI---TSDGFFAL----E-ELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDI 210 (450)
T ss_pred CCCCCCCCCcc--eeE---chhHhhCc----c-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHH
Confidence 45566688864 233 22232222 1 14789999999999999999999999999999999988875 89999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--h-ccccc-ccCcEEEec
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG 161 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~~~~-~~g~i~vd~ 161 (358)
.+.+.+.|+++||+++++++|++++.++++.+ .+.+.+|+++++|.|++++|++|+++.+ + ..+.+ ++|+|.||+
T Consensus 211 ~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~ 289 (450)
T PRK06116 211 RETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDE 289 (450)
T ss_pred HHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCC
Confidence 99999999999999999999999986444433 4677788899999999999999999843 2 33555 578899999
Q ss_pred cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecccc
Q 018320 162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVG 239 (358)
Q Consensus 162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~ 239 (358)
++||+.|+|||+|||+..+ +++..|++||+.||+||++... ...+..+|+.++ ..+.++++|+++.
T Consensus 290 ~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if--~~p~~a~vGlte~ 357 (450)
T PRK06116 290 YQNTNVPGIYAVGDVTGRV----------ELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVF--SHPPIGTVGLTEE 357 (450)
T ss_pred CCCcCCCCEEEEeecCCCc----------CcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEe--CCCccEEeeCCHH
Confidence 9999999999999998643 4577899999999999998542 235567786543 3348899999875
Q ss_pred eEEEEc----------c----------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhh
Q 018320 240 EVVHYG----------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELET 296 (358)
Q Consensus 240 ~~~~~g----------~----------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~ 296 (358)
++...+ . .+..+|.|+++ ++++|||+|++|+++.+ ++.++.||+.++|++||.++.
T Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~- 436 (450)
T PRK06116 358 EAREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTV- 436 (450)
T ss_pred HHHHhCCCCcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccc-
Confidence 432211 0 01234666655 58999999999988655 678899999999999998865
Q ss_pred cCCcccCCcCCC
Q 018320 297 QGLGFALAVSQK 308 (358)
Q Consensus 297 ~~~~yap~~~~~ 308 (358)
..+|.+++.
T Consensus 437 ---~~hPt~~e~ 445 (450)
T PRK06116 437 ---AIHPTAAEE 445 (450)
T ss_pred ---ccCCChHHH
Confidence 456766654
No 28
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.1e-35 Score=292.25 Aligned_cols=274 Identities=20% Similarity=0.231 Sum_probs=208.6
Q ss_pred CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHH
Q 018320 11 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE 90 (358)
Q Consensus 11 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~ 90 (358)
++||.+.++.+.+.+ +++..+ . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.
T Consensus 150 ~ipg~~~~~~~~~~~-~~~~~~----~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~ 222 (466)
T PRK06115 150 PLPGVTIDNQRIIDS-TGALSL----P-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQ 222 (466)
T ss_pred CCCCCCCCCCeEECH-HHHhCC----c-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHH
Confidence 467765555554432 333222 1 25799999999999999999999999999999999999997 8999999999
Q ss_pred HHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc-C--CCcEEecCeEEEeeCCCCChhhhh--c-ccccccCcEEEecccc
Q 018320 91 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-R--DGNRLPTDMVVVGIGIRPNTSLFE--G-QLTLEKGGIKVTGRLQ 164 (358)
Q Consensus 91 ~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~-~--~g~~i~~D~vi~a~G~~p~~~l~~--~-~~~~~~g~i~vd~~~~ 164 (358)
+.|++.||++++++++++++.++++....+.. . +++++++|.|++++|++||++.+. . .+..+.+++.||++++
T Consensus 223 ~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~ 302 (466)
T PRK06115 223 KALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHR 302 (466)
T ss_pred HHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCee
Confidence 99999999999999999998643332222222 1 235799999999999999998542 2 2445444588999999
Q ss_pred CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEE
Q 018320 165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY 244 (358)
Q Consensus 165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~ 244 (358)
|+.|+|||+|||+..+ +++..|.+||+.+|+||++.....++..+|..+. .++.++++|+++.++...
T Consensus 303 Ts~~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~--t~p~ia~vGlte~~a~~~ 370 (466)
T PRK06115 303 TSVPGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGKAGEVNYGLIPGVIY--TRPEVATVGKTEEQLKAE 370 (466)
T ss_pred cCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEE--CCcccEEeeCCHHHHHHC
Confidence 9999999999999754 3678899999999999998654346667887653 467899999988654221
Q ss_pred c-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccC
Q 018320 245 G-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFAL 303 (358)
Q Consensus 245 g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap 303 (358)
| + .+..+|.++.+ ++++|||+|++|+++.+ ++.++.||+.++|++||.++. ..+|
T Consensus 371 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~----~~hP 446 (466)
T PRK06115 371 GRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTC----HPHP 446 (466)
T ss_pred CCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCc----cCCC
Confidence 1 1 11124666554 58999999999988665 578899999999999998755 3345
Q ss_pred CcCC
Q 018320 304 AVSQ 307 (358)
Q Consensus 304 ~~~~ 307 (358)
.+++
T Consensus 447 t~~e 450 (466)
T PRK06115 447 TRSE 450 (466)
T ss_pred ChHH
Confidence 5554
No 29
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.4e-35 Score=294.84 Aligned_cols=274 Identities=19% Similarity=0.212 Sum_probs=210.1
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|..+++||.+...+++ + .+. +.. ...+++++|||+|++|+|+|..|+++|.+||++++. ++++. +|+++
T Consensus 161 ~p~~p~i~G~~~~~~~~--~-~~~--l~~---~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~ 230 (479)
T PRK14727 161 TPTIPPIPGLMDTPYWT--S-TEA--LFS---DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLL 230 (479)
T ss_pred CCCCCCCCCcCccceec--c-hHH--hcc---ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHH
Confidence 46666788875433332 1 222 111 124799999999999999999999999999999885 67776 89999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--hc-cccc-ccCcEEEec
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTG 161 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~-~~~~-~~g~i~vd~ 161 (358)
.+.+.+.|++.||++++++++++++.++++ ..+.+.++ ++++|.|++++|++||+.++ +. .+.+ ++|+|.||+
T Consensus 231 ~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~ 307 (479)
T PRK14727 231 GETLTACFEKEGIEVLNNTQASLVEHDDNG--FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNP 307 (479)
T ss_pred HHHHHHHHHhCCCEEEcCcEEEEEEEeCCE--EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECC
Confidence 999999999999999999999999763332 33555444 69999999999999999854 22 3555 568899999
Q ss_pred cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018320 162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 241 (358)
Q Consensus 162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~ 241 (358)
+|||+.|+|||+|||+..+. .+..|..||+.||.||++.....++..+|+. .++++.++++|+++.++
T Consensus 308 ~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~--~~~~p~ia~vGlte~~a 375 (479)
T PRK14727 308 AMETSAPDIYAAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNATLDLSAMPAV--IFTDPQVATVGLSEAKA 375 (479)
T ss_pred CeecCCCCEEEeeecCCcch----------hhhHHHHHHHHHHHHHcCCCcccccccCCcE--EEecCceeeeeCCHHHH
Confidence 99999999999999997653 3567889999999999987544455667754 47889999999998654
Q ss_pred EEEc-----------c-----C--CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCc
Q 018320 242 VHYG-----------N-----F--SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG 300 (358)
Q Consensus 242 ~~~g-----------~-----~--~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~ 300 (358)
...| + . ...+|.|+++ ++++|||+|++|+.+.+ ++.++.||+.++|++||.++. .
T Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~ 451 (479)
T PRK14727 376 HLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQL----F 451 (479)
T ss_pred HHcCCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCC----c
Confidence 2111 1 0 1123666655 58999999999988655 578899999999999999877 3
Q ss_pred ccCCcCCC
Q 018320 301 FALAVSQK 308 (358)
Q Consensus 301 yap~~~~~ 308 (358)
.+|.+++.
T Consensus 452 ~hPt~~E~ 459 (479)
T PRK14727 452 PYLTMVEG 459 (479)
T ss_pred cCCChHHH
Confidence 46666654
No 30
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.2e-35 Score=292.36 Aligned_cols=250 Identities=24% Similarity=0.322 Sum_probs=200.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
.+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|++++..+.+.|+++||+++++++|++++.+ ++.+ .
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~ 247 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKLGVKILTGTKVESIDDN-GSKV-T 247 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCeE-E
Confidence 4789999999999999999999999999999999999997 79999999999999999999999999999863 3322 3
Q ss_pred EEcC--CC--cEEecCeEEEeeCCCCChhhh---hccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccc
Q 018320 120 VNLR--DG--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE 191 (358)
Q Consensus 120 v~~~--~g--~~i~~D~vi~a~G~~p~~~l~---~~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~ 191 (358)
+.+. +| +++++|.|++++|++|+++++ ...+.+ ++|+|.||+++||+.|+|||+|||+..+ +
T Consensus 248 v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~----------~ 317 (466)
T PRK07818 248 VTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKL----------Q 317 (466)
T ss_pred EEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCc----------c
Confidence 3333 56 479999999999999999853 233555 5688999999999999999999998643 4
Q ss_pred cHHHHHHHHHHHHHHHcCCCCC-C-CCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCc
Q 018320 192 HVDSARKSAKHAVAAIMEPDKT-D-KFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTT 251 (358)
Q Consensus 192 ~~~~A~~~g~~aa~~i~g~~~~-~-~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~ 251 (358)
++..|..||+.||.||++.... . .+..+|. ..++++.++++|+++.++...| . .+..+
T Consensus 318 l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 395 (466)
T PRK07818 318 LAHVAEAQGVVAAETIAGAETLELGDYRMMPR--ATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPTG 395 (466)
T ss_pred cHhHHHHHHHHHHHHHcCCCCCccCccCCCCe--EEECCCCeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCCCCe
Confidence 6788999999999999986431 1 4455665 4467889999999887543222 1 11123
Q ss_pred eEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320 252 FGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 308 (358)
Q Consensus 252 ~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 308 (358)
|.|+.. ++++|||+|++|+++.+ ++.++.||+.++|++||.+.. .++|.+++.
T Consensus 396 ~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~ 451 (466)
T PRK07818 396 FVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNV----HTHPTLSEA 451 (466)
T ss_pred EEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCc----cCCCchHHH
Confidence 666554 58999999999988665 578899999999999998844 567777764
No 31
>PLN02546 glutathione reductase
Probab=100.00 E-value=5.2e-35 Score=295.29 Aligned_cols=274 Identities=18% Similarity=0.262 Sum_probs=211.6
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|..++|||.+ .++ +.+++..+. . .+++++|||||++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus 227 ~p~~P~IpG~~--~v~---~~~~~l~~~---~--~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~ 295 (558)
T PLN02546 227 RPFIPDIPGIE--HAI---DSDAALDLP---S--KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEV 295 (558)
T ss_pred CCCCCCCCChh--hcc---CHHHHHhcc---c--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHH
Confidence 44555688864 233 333333221 1 4789999999999999999999999999999999999986 89999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--hc-cccc-ccCcEEEec
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTG 161 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~-~~~~-~~g~i~vd~ 161 (358)
...+.+.|+++||++++++.+++++.++++.+ .+.+.+++...+|.|++++|++||++++ +. .+++ ++|+|.||+
T Consensus 296 ~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~ 374 (558)
T PLN02546 296 RDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDE 374 (558)
T ss_pred HHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECC
Confidence 99999999999999999999999976444433 4555555555699999999999999853 33 3666 568899999
Q ss_pred cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecC-ceEEEeecccc
Q 018320 162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFT-LSWQFYGDNVG 239 (358)
Q Consensus 162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~-~~~~~~G~~~~ 239 (358)
++||++|+|||+|||+..+ .++..|..||+.+|.||++... ...+..+|+. +|. ..++++|+++.
T Consensus 375 ~l~Ts~p~IYAaGDv~~~~----------~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~---vft~Peia~VGlte~ 441 (558)
T PLN02546 375 YSRTSVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFGNEPTKPDYRAVPSA---VFSQPPIGQVGLTEE 441 (558)
T ss_pred CceeCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEE---EeCCchHhhccCCHH
Confidence 9999999999999999753 3567899999999999998643 2356778864 444 47999999987
Q ss_pred eEEEEcc------------------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcC
Q 018320 240 EVVHYGN------------------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG 298 (358)
Q Consensus 240 ~~~~~g~------------------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~ 298 (358)
++...+. ....+|.|+.+ ++++|||+|++|+++.+ ++.++.||++++|++||.++.
T Consensus 442 eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~--- 518 (558)
T PLN02546 442 QAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATV--- 518 (558)
T ss_pred HHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc---
Confidence 5432210 01134666654 68999999999988665 578899999999999998755
Q ss_pred CcccCCcCCC
Q 018320 299 LGFALAVSQK 308 (358)
Q Consensus 299 ~~yap~~~~~ 308 (358)
..+|.+++.
T Consensus 519 -~~hPT~~E~ 527 (558)
T PLN02546 519 -GIHPTAAEE 527 (558)
T ss_pred -cCCCChHHH
Confidence 456666654
No 32
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=7.2e-35 Score=291.18 Aligned_cols=275 Identities=21% Similarity=0.264 Sum_probs=208.9
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|+.+++||.+. ..+ +.+++..+. ..+++++|||||++|+|+|..|+++|.+||++++ +.+++. +|+++
T Consensus 154 ~p~~p~ipG~~~-~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~~ 222 (484)
T TIGR01438 154 RPRYPGIPGAKE-LCI---TSDDLFSLP-----YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQDC 222 (484)
T ss_pred CCCCCCCCCccc-eee---cHHHhhccc-----ccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccc-cCHHH
Confidence 466667888642 222 333333221 1468999999999999999999999999999998 477775 89999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC---cEEecCeEEEeeCCCCChhhhh--c-ccccc--cCcE
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLFE--G-QLTLE--KGGI 157 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~l~~--~-~~~~~--~g~i 157 (358)
++.+.+.|+++||++++++.+++++..+ +. ..+++.++ +++++|.|++++|++||++++. . ++.++ +|+|
T Consensus 223 ~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I 300 (484)
T TIGR01438 223 ANKVGEHMEEHGVKFKRQFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKI 300 (484)
T ss_pred HHHHHHHHHHcCCEEEeCceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeE
Confidence 9999999999999999999999997633 32 34555555 3799999999999999998642 2 35552 4889
Q ss_pred EEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeec
Q 018320 158 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGD 236 (358)
Q Consensus 158 ~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~ 236 (358)
.||+++||+.|+|||+|||+.... .++..|.+||+.+|+||++... ...+..+|+.+ ++++.++++|+
T Consensus 301 ~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i--~~~p~ia~vGl 369 (484)
T TIGR01438 301 PADEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTV--FTPLEYGACGL 369 (484)
T ss_pred ecCCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCCcccccccCCeEE--eCCCceeeecC
Confidence 999999999999999999996422 3567899999999999997542 13456677754 57788999999
Q ss_pred ccceEEEE-c------------c-------CC--CCceEEEEe---eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCccc
Q 018320 237 NVGEVVHY-G------------N-------FS--GTTFGAYWV---NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVED 290 (358)
Q Consensus 237 ~~~~~~~~-g------------~-------~~--~~~~~~~~~---~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~d 290 (358)
++.++... + . .+ ..+|.++.+ ++++|||+|++|+++.+ ++.++.||++++|++|
T Consensus 370 te~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~d 449 (484)
T TIGR01438 370 SEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKD 449 (484)
T ss_pred CHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHH
Confidence 87654321 1 0 00 123666543 37999999999987665 5788999999999999
Q ss_pred HHHHhhcCCcccCCcCCC
Q 018320 291 LAELETQGLGFALAVSQK 308 (358)
Q Consensus 291 l~~l~~~~~~yap~~~~~ 308 (358)
|.++. .++|.+++.
T Consensus 450 l~~~~----~~hPt~sE~ 463 (484)
T TIGR01438 450 LDNTI----GIHPVCAEV 463 (484)
T ss_pred Hhhhh----cCCCChHHH
Confidence 99855 567777765
No 33
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=8.8e-35 Score=290.58 Aligned_cols=250 Identities=22% Similarity=0.293 Sum_probs=202.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
.+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++...+.+.|+++||+++++++|++++.++++ + .
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~-v-~ 258 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKG-V-S 258 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCE-E-E
Confidence 4799999999999999999999999999999999999886 89999999999999999999999999999864332 2 3
Q ss_pred EEcCC--C--cEEecCeEEEeeCCCCChhhh--hc-cccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccc
Q 018320 120 VNLRD--G--NRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE 191 (358)
Q Consensus 120 v~~~~--g--~~i~~D~vi~a~G~~p~~~l~--~~-~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~ 191 (358)
+.+.+ | +++++|.+++++|++|+++++ +. .+.. ++|+|.||++++|+.|+|||+|||+..+ .
T Consensus 259 v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~----------~ 328 (475)
T PRK06327 259 VAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGP----------M 328 (475)
T ss_pred EEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCc----------c
Confidence 44443 3 469999999999999999843 22 2555 5788999999999999999999998753 3
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc--------c----------CCCCceE
Q 018320 192 HVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG--------N----------FSGTTFG 253 (358)
Q Consensus 192 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g--------~----------~~~~~~~ 253 (358)
++..|..||+.||.+|++......+..+|+.+ ++++.++.+|+++.++...| . .+..+|.
T Consensus 329 ~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~--~~~pe~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 406 (475)
T PRK06327 329 LAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI--YTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFV 406 (475)
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--eCCcceEEEeCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEE
Confidence 57789999999999999865434566778765 57899999999886542211 0 1112366
Q ss_pred EEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320 254 AYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 308 (358)
Q Consensus 254 ~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 308 (358)
|+.+ ++++|||+|++|+++.+ ++.++.||++++|++||.++. .++|++++.
T Consensus 407 klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~ 460 (475)
T PRK06327 407 KIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARIC----HAHPTLSEV 460 (475)
T ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCC----cCCCChHHH
Confidence 6655 58999999999988665 678899999999999998865 567777664
No 34
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.7e-34 Score=294.33 Aligned_cols=274 Identities=21% Similarity=0.245 Sum_probs=208.7
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|..+++||.+...++ .+. ++... ...+++++|||+|++|+|+|..|+++|.+||++++. .+++. +|+++
T Consensus 243 ~p~~p~i~g~~~~~~~--~~~-~~~~~-----~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~ 312 (561)
T PRK13748 243 SPAVPPIPGLKETPYW--TST-EALVS-----DTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAI 312 (561)
T ss_pred CCCCCCCCCCCccceE--ccH-HHhhc-----ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHH
Confidence 4566678887533222 222 22111 124799999999999999999999999999999985 56766 79999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhh--h-ccccc-ccCcEEEec
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG 161 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~~~~-~~g~i~vd~ 161 (358)
++.+.+.|++.||++++++.+++++.+ ++. ..+.+.++ ++++|.|++++|++||+.++ + .++.. ++|+|.||+
T Consensus 313 ~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~ 389 (561)
T PRK13748 313 GEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQ 389 (561)
T ss_pred HHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECC
Confidence 999999999999999999999999763 333 23554444 69999999999999999853 2 33655 568899999
Q ss_pred cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018320 162 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 241 (358)
Q Consensus 162 ~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~ 241 (358)
++||+.|+|||+|||+..+. .+..|..||+.||.||+|.....++..+|. ..++++.++++|+++.++
T Consensus 390 ~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a 457 (561)
T PRK13748 390 GMRTSVPHIYAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQVATVGYSEAEA 457 (561)
T ss_pred CcccCCCCEEEeeecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCe--EEEccCCceeeeCCHHHH
Confidence 99999999999999997653 455788999999999998654344555674 447899999999988543
Q ss_pred EEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCc
Q 018320 242 VHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG 300 (358)
Q Consensus 242 ~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~ 300 (358)
...| + ....+|.|+.+ ++++|||+|++|+.+.+ ++.++.||+.++|++||.++. .
T Consensus 458 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~ 533 (561)
T PRK13748 458 HHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQL----F 533 (561)
T ss_pred HHcCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccc----c
Confidence 2221 0 01234777665 48999999999988665 578899999999999998876 3
Q ss_pred ccCCcCCC
Q 018320 301 FALAVSQK 308 (358)
Q Consensus 301 yap~~~~~ 308 (358)
.+|.+++.
T Consensus 534 ~~Pt~~e~ 541 (561)
T PRK13748 534 PYLTMVEG 541 (561)
T ss_pred cCCchHHH
Confidence 45666553
No 35
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=3.2e-34 Score=285.73 Aligned_cols=250 Identities=23% Similarity=0.302 Sum_probs=201.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
.+++++|||||++|+|+|..|++.|.+||++++.+++++. +++++.+.+.+.|+++||++++++++++++.+ ++.+ .
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~ 245 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQV-V 245 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEE-E
Confidence 4789999999999999999999999999999999999986 89999999999999999999999999999863 3333 3
Q ss_pred EEcCCC--cEEecCeEEEeeCCCCChh--hhhcc-ccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccH
Q 018320 120 VNLRDG--NRLPTDMVVVGIGIRPNTS--LFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV 193 (358)
Q Consensus 120 v~~~~g--~~i~~D~vi~a~G~~p~~~--l~~~~-~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~ 193 (358)
+++.+| +++++|.+++++|++|+++ +++.. +.. .+|.|.||+++||+.|+|||+|||+..+ +++
T Consensus 246 v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~----------~~~ 315 (461)
T TIGR01350 246 YENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGP----------MLA 315 (461)
T ss_pred EEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCc----------ccH
Confidence 555566 5799999999999999998 34433 555 5688999999999999999999998753 457
Q ss_pred HHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCceEE
Q 018320 194 DSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTTFGA 254 (358)
Q Consensus 194 ~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~~~~ 254 (358)
..|..||+.+|.+|.+... ..++...|. ..+++..++.+|+++.++...| + ....+|.+
T Consensus 316 ~~A~~~g~~aa~~i~~~~~~~~~~~~~~~--~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k 393 (461)
T TIGR01350 316 HVASHEGIVAAENIAGKEPAPIDYDAVPS--CIYTDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVK 393 (461)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCe--EEecCCceEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEE
Confidence 7899999999999998653 233344554 4567889999998876432211 1 01123666
Q ss_pred EEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320 255 YWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 308 (358)
Q Consensus 255 ~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 308 (358)
+.+ ++++|||+|++|+++.+ ++.++.||++++|++||.++ +.|+|+|++.
T Consensus 394 l~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~----~~~~P~~~e~ 446 (461)
T TIGR01350 394 IIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKT----IHPHPTLSEA 446 (461)
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC----cccCCCHHHH
Confidence 555 57999999999988655 67889999999999999884 5889999875
No 36
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=4.8e-34 Score=282.64 Aligned_cols=275 Identities=20% Similarity=0.217 Sum_probs=211.2
Q ss_pred CCccCCCCCC-CCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHH
Q 018320 6 KLEEFGLSGS-DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 84 (358)
Q Consensus 6 ~P~~~~ipG~-~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~ 84 (358)
+|+.+++||. +.+++++. .++..+ .. .+++++|||+|++|+|+|..|++.|.+||++++.+++++. .+++
T Consensus 129 ~~~~p~i~G~~~~~~v~~~---~~~~~~---~~--~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~ 199 (438)
T PRK07251 129 VSNVLPIPGLADSKHVYDS---TGIQSL---ET--LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPS 199 (438)
T ss_pred CCCCCCCCCcCCCCcEEch---HHHhcc---hh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHH
Confidence 3555668886 34566643 222222 21 4789999999999999999999999999999999999987 7999
Q ss_pred HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh---ccccc-ccCcEEEe
Q 018320 85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVT 160 (358)
Q Consensus 85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~~g~i~vd 160 (358)
+.+.+.+.|+++||++++++++++++.+ ++.+ .+. .+++++++|.+++|+|++|+++.+. ..+.. ++|.|.||
T Consensus 200 ~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd 276 (438)
T PRK07251 200 VAALAKQYMEEDGITFLLNAHTTEVKND-GDQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVD 276 (438)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEEC
Confidence 9999999999999999999999999863 3332 233 4577899999999999999987543 23444 56889999
Q ss_pred ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeeccc
Q 018320 161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNV 238 (358)
Q Consensus 161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~ 238 (358)
+++||+.|+|||+|||+..+. ....|..||+.++.++++... ...+..+|+. .+++..++++|+++
T Consensus 277 ~~~~t~~~~IyaiGD~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~ia~vGlte 344 (438)
T PRK07251 277 DYCQTSVPGVFAVGDVNGGPQ----------FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPPLSQVGLTE 344 (438)
T ss_pred CCcccCCCCEEEeeecCCCcc----------cHhHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCceEeeeCCH
Confidence 999999999999999987543 355688899999999987642 1244567765 45899999999988
Q ss_pred ceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhc
Q 018320 239 GEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQ 297 (358)
Q Consensus 239 ~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~ 297 (358)
.++...| . .+..+|.|+.+ ++++|||+|++|+++.+ ++.++.||++++|++||.+.
T Consensus 345 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~--- 421 (438)
T PRK07251 345 KEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQ--- 421 (438)
T ss_pred HHHHhcCCCeEEEEEECCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc---
Confidence 7543222 0 01123666554 58999999999988655 67889999999999998774
Q ss_pred CCcccCCcCCC
Q 018320 298 GLGFALAVSQK 308 (358)
Q Consensus 298 ~~~yap~~~~~ 308 (358)
+.++|.+++.
T Consensus 422 -~~~hPt~~e~ 431 (438)
T PRK07251 422 -IFTHPTMAEN 431 (438)
T ss_pred -cccCCChHHH
Confidence 3567777653
No 37
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.2e-34 Score=284.80 Aligned_cols=250 Identities=23% Similarity=0.290 Sum_probs=198.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
.+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++...+++.|+++ |++++++++++++.+++..+ .
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v-~ 244 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKV-E 244 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceE-E
Confidence 4789999999999999999999999999999999999986 8999999999999999 99999999999986332122 2
Q ss_pred EEcCC--CcEEecCeEEEeeCCCCChhhh--h-ccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccH
Q 018320 120 VNLRD--GNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV 193 (358)
Q Consensus 120 v~~~~--g~~i~~D~vi~a~G~~p~~~l~--~-~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~ 193 (358)
+++.+ ++++++|.+++++|++|+++++ + ..+.. ++|.|.||+++||+.|+|||+|||+..+ +++
T Consensus 245 ~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~----------~~~ 314 (460)
T PRK06292 245 ELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKP----------PLL 314 (460)
T ss_pred EEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCc----------cch
Confidence 32333 3579999999999999999853 2 23555 5688999999999999999999998753 356
Q ss_pred HHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEEecCceEEEeecccceEEEEc--------c----------CCCCceEE
Q 018320 194 DSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG--------N----------FSGTTFGA 254 (358)
Q Consensus 194 ~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g--------~----------~~~~~~~~ 254 (358)
..|..||+.||.||++. .....+..+|+.+ ++++.++++|+++.++...| . ....+|.|
T Consensus 315 ~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~--~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k 392 (460)
T PRK06292 315 HEAADEGRIAAENAAGDVAGGVRYHPIPSVV--FTDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVK 392 (460)
T ss_pred hHHHHHHHHHHHHhcCCCCCCcCCCCCCeEE--ECCCccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCeEEE
Confidence 78999999999999984 3223455677543 56889999999886543221 0 11234666
Q ss_pred EEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320 255 YWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 308 (358)
Q Consensus 255 ~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 308 (358)
+.+ ++++|||+|++|+++.+ ++.++.||++++|++||.++. .++|.+++.
T Consensus 393 lv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~ 445 (460)
T PRK06292 393 VYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMP----FYHPTLSEG 445 (460)
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----cCCCCHHHH
Confidence 555 57999999999988655 678899999999999998876 367777665
No 38
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.8e-34 Score=284.57 Aligned_cols=252 Identities=22% Similarity=0.270 Sum_probs=199.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
.+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.|+++||++++++.+++++...++.+..
T Consensus 179 ~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~ 257 (472)
T PRK05976 179 LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLI 257 (472)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEE
Confidence 3789999999999999999999999999999999999986 799999999999999999999999999997421333334
Q ss_pred EEcCCC--cEEecCeEEEeeCCCCChhhhh--c-ccccccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHH
Q 018320 120 VNLRDG--NRLPTDMVVVGIGIRPNTSLFE--G-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 194 (358)
Q Consensus 120 v~~~~g--~~i~~D~vi~a~G~~p~~~l~~--~-~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~ 194 (358)
+.+.+| +++++|.+++++|++|+++.+. . .+..+++.|.||++++|+.|+|||+|||+..+ +++.
T Consensus 258 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~----------~~~~ 327 (472)
T PRK05976 258 VAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEP----------QLAH 327 (472)
T ss_pred EEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccCCCCEEEeeecCCCc----------ccHH
Confidence 445566 3699999999999999997542 2 23345788999999999999999999998643 3577
Q ss_pred HHHHHHHHHHHHHcCCC-CCCCCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCceEEE
Q 018320 195 SARKSAKHAVAAIMEPD-KTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTTFGAY 255 (358)
Q Consensus 195 ~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~~~~~ 255 (358)
.|..||+.|+.+|+|.. ...++..+|. ..+++..++++|+++.++...| . ....+|.++
T Consensus 328 ~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl 405 (472)
T PRK05976 328 VAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKV 405 (472)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCceEEEeCCHHHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEE
Confidence 89999999999999864 2233444554 4578999999999876432211 0 111236665
Q ss_pred Ee--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320 256 WV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 308 (358)
Q Consensus 256 ~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 308 (358)
.. ++++|||+|++|+++.+ ++.++.||+.++|++||.++. ..+|.+++.
T Consensus 406 i~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~ 457 (472)
T PRK05976 406 VADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTI----HPHPTLSEA 457 (472)
T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----ccCCChHHH
Confidence 54 57999999999988665 678999999999999998865 456766654
No 39
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=2.8e-33 Score=280.84 Aligned_cols=249 Identities=19% Similarity=0.298 Sum_probs=197.5
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
.+++++|||||++|+|+|..|+++|.+||++++. .+++. +|+++++.+.+.|+++||++++++.+++++..+ +. ..
T Consensus 181 ~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~ 256 (499)
T PTZ00052 181 DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRG-FDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IK 256 (499)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccccc-CCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EE
Confidence 4689999999999999999999999999999874 66765 899999999999999999999999999997633 32 34
Q ss_pred EEcCCCcEEecCeEEEeeCCCCChhhhh--c-cccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHH
Q 018320 120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE--G-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 195 (358)
Q Consensus 120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~--~-~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~ 195 (358)
+.+.+|+++++|.|++++|++||++++. . .+++ ++|.+.+++. +|+.|+|||+|||+.... .++..
T Consensus 257 v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv~~~~~---------~l~~~ 326 (499)
T PTZ00052 257 VLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDVVEGRP---------ELTPV 326 (499)
T ss_pred EEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEecCCCc---------ccHHH
Confidence 6677888999999999999999998763 2 2555 5677777777 999999999999986321 35778
Q ss_pred HHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecccceEEEE-c-c--------C-----------------
Q 018320 196 ARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY-G-N--------F----------------- 247 (358)
Q Consensus 196 A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-g-~--------~----------------- 247 (358)
|.+||+.+|.||++... ..++..+|+.+ +.++.++++|+++.++... + + .
T Consensus 327 A~~~g~~aa~ni~g~~~~~~~~~~~p~~i--ft~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (499)
T PTZ00052 327 AIKAGILLARRLFKQSNEFIDYTFIPTTI--FTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERAR 404 (499)
T ss_pred HHHHHHHHHHHHhCCCCCcCccccCCeEE--ecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhccccccccccc
Confidence 99999999999998542 13455677755 4578899999987644321 1 0 0
Q ss_pred --------CCCceEEEEe--e-CCeEEEEEEeCCCHHHH-HHHHHHHHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320 248 --------SGTTFGAYWV--N-KGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK 308 (358)
Q Consensus 248 --------~~~~~~~~~~--~-~g~ilGa~~vg~~~~~~-~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 308 (358)
+..+|.++.. + +++|||+|++|+++.++ +.++.||++++|++||.++. ..+|.+++.
T Consensus 405 ~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~----~~hPt~sE~ 473 (499)
T PTZ00052 405 KDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMI----GIHPTDAEV 473 (499)
T ss_pred cccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccc----ccCCCCchh
Confidence 0234766654 2 69999999999987765 67899999999999999876 456766664
No 40
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.6e-32 Score=266.72 Aligned_cols=252 Identities=21% Similarity=0.290 Sum_probs=205.5
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|..+++||.+. +++++++.++.+++..+. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++
T Consensus 110 ~~~~p~i~G~~~--v~~~~~~~~~~~~~~~~~--~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 185 (377)
T PRK04965 110 SAFVPPIPGREL--MLTLNSQQEYRAAETQLR--DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEV 185 (377)
T ss_pred CCCCCCCCCCce--EEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHH
Confidence 455567898764 899999999998888775 5789999999999999999999999999999999999887789999
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEEecccc
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ 164 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~vd~~~~ 164 (358)
...+.+.|++.||++++++.+++++.+++ . ..+.+.+|+++++|.||+|+|.+|++.+++.. +..++ +|.||++|+
T Consensus 186 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~-~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ 262 (377)
T PRK04965 186 SSRLQHRLTEMGVHLLLKSQLQGLEKTDS-G-IRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQ 262 (377)
T ss_pred HHHHHHHHHhCCCEEEECCeEEEEEccCC-E-EEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcc
Confidence 99999999999999999999999986322 2 35778899999999999999999999987654 55554 599999999
Q ss_pred CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCC-CCeEEEEecCceEEEeecccceE--
Q 018320 165 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDY-LPFFYSRVFTLSWQFYGDNVGEV-- 241 (358)
Q Consensus 165 t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~~-- 241 (358)
|+.|+|||+|||+..+.. ..+.+..|..||+.+|.||+|... .+.. .+....+++++++.++|...++.
T Consensus 263 ts~~~VyA~GD~a~~~~~------~~~~~~~a~~~g~~~a~n~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 334 (377)
T PRK04965 263 TSAPDIYALGDCAEINGQ------VLPFLQPIQLSAMALAKNLLGQNT--PLKLPAMLVKVKTPELPLQLAGETQRQDLR 334 (377)
T ss_pred cCCCCEEEeeecEeECCc------eeehHHHHHHHHHHHHHHhcCCCc--ccccCCccEEEecCceeeEECCCCCCCCce
Confidence 999999999999987532 235678899999999999999764 3333 33355678999999999765421
Q ss_pred EEEccCCCCceEEEEeeCCeEEEEEEeCCCH
Q 018320 242 VHYGNFSGTTFGAYWVNKGRLVGSFLEGGTK 272 (358)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~ 272 (358)
...-+..+..|.+++.++|+|+|+.++|+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~ 365 (377)
T PRK04965 335 WQINAESQGMVAKGVDEAGQLRAFVVSEDRM 365 (377)
T ss_pred EEEEeCCCCeEEEEEccCCcEEEEEEEChhH
Confidence 1112223334788888999999999999643
No 41
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.7e-32 Score=251.36 Aligned_cols=243 Identities=23% Similarity=0.331 Sum_probs=200.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
-|++++|||+|.||+|++....++|.+||+||-.+++.+. +|++++...++.|.++|++|+++++|+.++.+.+|.+ .
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~ 287 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV-E 287 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce-E
Confidence 4899999999999999999999999999999999999997 9999999999999999999999999999998888744 3
Q ss_pred EEcCC---C--cEEecCeEEEeeCCCCChhhhh---ccccc-ccCcEEEeccccCCCCcEEEEcccccccccccCccccc
Q 018320 120 VNLRD---G--NRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 190 (358)
Q Consensus 120 v~~~~---g--~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~ 190 (358)
+++.+ + ++++||.+++++|++|.+.-+. -++.. .+++|.||+.++|.+|+||+||||+..|.
T Consensus 288 i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpM--------- 358 (506)
T KOG1335|consen 288 IEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGPM--------- 358 (506)
T ss_pred EEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCCceEEecccCCcch---------
Confidence 44432 2 4699999999999999997443 23444 67899999999999999999999998875
Q ss_pred ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc------------------cCCCCce
Q 018320 191 EHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTF 252 (358)
Q Consensus 191 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~ 252 (358)
++..|..||..+.+.|.+......+..+|...+... .++.+|.+|.++...| +.+..+|
T Consensus 359 -LAhkAeeegI~~VE~i~g~~~hv~ynciP~v~ythP--EvawVG~TEeqlkeegi~y~vgkfpF~aNsRaktn~d~eg~ 435 (506)
T KOG1335|consen 359 -LAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHP--EVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGF 435 (506)
T ss_pred -hhhhhhhhchhheeeecccCcccccCCCCceeeccc--ceeeeccchhhHHhcCcceEeeeccccccchhhccCCccce
Confidence 466788999999999998876678888998665443 4678898876432221 1222347
Q ss_pred EEEE--eeCCeEEEEEEeCCCHHHH-HHHHHHHHcCCCcccHHHHhh
Q 018320 253 GAYW--VNKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELET 296 (358)
Q Consensus 253 ~~~~--~~~g~ilGa~~vg~~~~~~-~~~a~ai~~~~~~~dl~~l~~ 296 (358)
.++. .++++|||+|++|+.+.++ ...+.||..|.+.+|.++...
T Consensus 436 vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvch 482 (506)
T KOG1335|consen 436 VKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCH 482 (506)
T ss_pred eEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccC
Confidence 6654 3799999999999998876 456899999999999998763
No 42
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=9.4e-32 Score=245.91 Aligned_cols=274 Identities=17% Similarity=0.244 Sum_probs=212.8
Q ss_pred CCCCCCccCCCCCCC----CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320 2 NMALKLEEFGLSGSD----AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 77 (358)
Q Consensus 2 ~~~~~P~~~~ipG~~----~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l 77 (358)
|+|+.|+ |||.+ +++.| +... .|||++|||+|+|++|+|..++.+|.++.++-|.+.+|
T Consensus 163 g~p~~Pn---IpG~E~gidSDgff------~Lee--------~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL 225 (478)
T KOG0405|consen 163 GRPIIPN---IPGAELGIDSDGFF------DLEE--------QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL 225 (478)
T ss_pred CccCCCC---CCchhhcccccccc------chhh--------cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh
Confidence 6788884 78764 34444 2111 58999999999999999999999999999999999999
Q ss_pred CccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh---ccccc-c
Q 018320 78 ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-E 153 (358)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~~~~-~ 153 (358)
.. ||+.+++.+.+.|+.+||++|++++++++.+..+|... +..+.|....+|.++||+|+.|++.-+. -++++ .
T Consensus 226 R~-FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~ 303 (478)
T KOG0405|consen 226 RG-FDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDK 303 (478)
T ss_pred cc-hhHHHHHHHHHHhhhcceeecccccceeeeecCCCceE-EEEeccccccccEEEEEecCCCCcccccchhcceeeCC
Confidence 97 99999999999999999999999999999886666443 4445565566999999999999997443 34666 7
Q ss_pred cCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC--CCCCCCCCCeEEEEecCceE
Q 018320 154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD--KTDKFDYLPFFYSRVFTLSW 231 (358)
Q Consensus 154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~--~~~~~~~~p~~~~~~~~~~~ 231 (358)
+|.|.||++.+||+|+||++||++..- .+...|+..|+..++.+.+.. .+.+|..+|..++.. .++
T Consensus 304 ~g~IivDeYq~Tnvp~I~avGDv~gk~----------~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFsh--P~i 371 (478)
T KOG0405|consen 304 NGAIIVDEYQNTNVPSIWAVGDVTGKI----------NLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSH--PPI 371 (478)
T ss_pred CCCEEEeccccCCCCceEEeccccCcE----------ecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEec--CCc
Confidence 899999999999999999999998754 345578889999999999843 336788899755432 346
Q ss_pred EEeecccceEEEEc---c----CC----------C---CceEEEEe--eCCeEEEEEEeCCCHHHH-HHHHHHHHcCCCc
Q 018320 232 QFYGDNVGEVVHYG---N----FS----------G---TTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVV 288 (358)
Q Consensus 232 ~~~G~~~~~~~~~g---~----~~----------~---~~~~~~~~--~~g~ilGa~~vg~~~~~~-~~~a~ai~~~~~~ 288 (358)
..+|+++.|++... + .+ + ....++.. ++.+++|++++|....|| +-++.|+++|.|-
T Consensus 372 gtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTK 451 (478)
T KOG0405|consen 372 GTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATK 451 (478)
T ss_pred ccccCCHHHHHHHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcch
Confidence 78999998764321 0 00 0 11333333 789999999999876664 7899999999999
Q ss_pred ccHHHHhhcCCcccCCcCCCCC
Q 018320 289 EDLAELETQGLGFALAVSQKPL 310 (358)
Q Consensus 289 ~dl~~l~~~~~~yap~~~~~~~ 310 (358)
.|+.... +.+|.-++.-+
T Consensus 452 adFD~tV----aIHPTSAEElV 469 (478)
T KOG0405|consen 452 ADFDSTV----AIHPTSAEELV 469 (478)
T ss_pred hhhccce----eecCCCHHHhe
Confidence 8876544 66676555433
No 43
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.95 E-value=2.3e-27 Score=227.74 Aligned_cols=196 Identities=28% Similarity=0.404 Sum_probs=165.7
Q ss_pred CCCccCCCCCCCCCCeEEecCHHHHHHHHHHHhc-------CCC----CcEEEEcCcHHHHHHHHHHHhC----------
Q 018320 5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-------CSG----GNAVVIGGGYIGMECAASLVIN---------- 63 (358)
Q Consensus 5 ~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~-------~~~----~~vvVIGgG~~gle~A~~L~~~---------- 63 (358)
-+++.+++||.. ++.|.+++++||.++++.+.. .+. .+++|+|||++|+|+|..|+++
T Consensus 109 s~~~~fgi~G~~-E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~ 187 (405)
T COG1252 109 SETNYFGIPGAA-EYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRV 187 (405)
T ss_pred CcCCcCCCCCHH-HhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcC
Confidence 367889999973 789999999999999987751 112 2699999999999999999864
Q ss_pred ---CCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc-EEecCeEEEeeCC
Q 018320 64 ---KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGI 139 (358)
Q Consensus 64 ---g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~ 139 (358)
..+|++||++++++|. ++++++...++.|+++||++++++.|+++++ + .+.+.+|. +|++|++||++|.
T Consensus 188 ~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~----~v~~~~g~~~I~~~tvvWaaGv 260 (405)
T COG1252 188 DPSELRVILVEAGPRILPM-FPPKLSKYAERALEKLGVEVLLGTPVTEVTP--D----GVTLKDGEEEIPADTVVWAAGV 260 (405)
T ss_pred CccccEEEEEccCchhccC-CCHHHHHHHHHHHHHCCCEEEcCCceEEECC--C----cEEEccCCeeEecCEEEEcCCC
Confidence 1389999999999997 9999999999999999999999999999974 2 46777777 5999999999999
Q ss_pred CCChhhhh-ccccc-ccCcEEEeccccC-CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC
Q 018320 140 RPNTSLFE-GQLTL-EKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 212 (358)
Q Consensus 140 ~p~~~l~~-~~~~~-~~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~ 212 (358)
+++...-+ ...+. ..|++.||+++|. ++|+|||+|||+...+. ...++.++.|++||+.+|+||.....
T Consensus 261 ~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 261 RASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred cCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 99876654 34555 4699999999998 89999999999988764 22346788999999999999986543
No 44
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-27 Score=218.58 Aligned_cols=279 Identities=20% Similarity=0.233 Sum_probs=207.4
Q ss_pred CCCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHH
Q 018320 5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 84 (358)
Q Consensus 5 ~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~ 84 (358)
.+|+.++|||.. +.-. +-+|.-.+ .. .|.+.+|||+|++++|||..|+..|.+||+..|+ -++. .||.+
T Consensus 171 ~RPrYp~IpG~~-Ey~I---TSDDlFsl----~~-~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~Lr-GFDqd 239 (503)
T KOG4716|consen 171 LRPRYPDIPGAK-EYGI---TSDDLFSL----PY-EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLR-GFDQD 239 (503)
T ss_pred CCCCCCCCCCce-eeee---cccccccc----cC-CCCceEEEccceeeeehhhhHhhcCCCcEEEEEE-eecc-cccHH
Confidence 578999999952 2112 11222221 11 4678899999999999999999999999999986 3444 49999
Q ss_pred HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE--cCCC--cEEecCeEEEeeCCCCChhhhh---ccccc--ccC
Q 018320 85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN--LRDG--NRLPTDMVVVGIGIRPNTSLFE---GQLTL--EKG 155 (358)
Q Consensus 85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~--~~~g--~~i~~D~vi~a~G~~p~~~l~~---~~~~~--~~g 155 (358)
|++.+.+.|+++||+|...+.+++++..+++++.... +..+ -+-++|.|+||+|+.+.++-+. .+++. ..+
T Consensus 240 mae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~ 319 (503)
T KOG4716|consen 240 MAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSG 319 (503)
T ss_pred HHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCC
Confidence 9999999999999999999888888887777643221 1122 2456999999999999987443 34555 568
Q ss_pred cEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEe
Q 018320 156 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFY 234 (358)
Q Consensus 156 ~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~ 234 (358)
.|.+|+.-+|++|+|||+||...... ++...|++.||..|+.+.+... ..+|..+|+.. |..+....+
T Consensus 320 KI~v~~~e~t~vp~vyAvGDIl~~kp---------ELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTV--FTPLEy~c~ 388 (503)
T KOG4716|consen 320 KIPVDDEEATNVPYVYAVGDILEDKP---------ELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTV--FTPLEYGCV 388 (503)
T ss_pred ccccChHHhcCCCceEEecceecCCc---------ccchhhhhhchHHHHHHhcCcceeeeccCCceee--ecchhcccc
Confidence 89999999999999999999988643 4566899999999999987643 35777788743 456778899
Q ss_pred ecccceEEEE-c-------------------cCCCCc-eEEEEe---eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcc
Q 018320 235 GDNVGEVVHY-G-------------------NFSGTT-FGAYWV---NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVE 289 (358)
Q Consensus 235 G~~~~~~~~~-g-------------------~~~~~~-~~~~~~---~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~ 289 (358)
|+++.+++.. | ..+... |.+... ++.+|+|.|++||.+.| ++-++.|++.|+|..
T Consensus 389 GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~ 468 (503)
T KOG4716|consen 389 GLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKK 468 (503)
T ss_pred CCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHH
Confidence 9998654321 1 111112 555443 57899999999999776 578999999999999
Q ss_pred cHHHHhhcCCcccCCc
Q 018320 290 DLAELETQGLGFALAV 305 (358)
Q Consensus 290 dl~~l~~~~~~yap~~ 305 (358)
||..+...+..-+..|
T Consensus 469 ~l~ntigIHPt~aE~F 484 (503)
T KOG4716|consen 469 DLDNTIGIHPTTAEEF 484 (503)
T ss_pred HHhhcccccccchhhe
Confidence 9988774444444334
No 45
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.95 E-value=2.9e-26 Score=226.14 Aligned_cols=192 Identities=23% Similarity=0.363 Sum_probs=159.7
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcC---------------CCCcEEEEcCcHHHHHHHHHHHh--------
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVI-------- 62 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~---------------~~~~vvVIGgG~~gle~A~~L~~-------- 62 (358)
+|+.+++||.+ ++++++++++|+.++++.+.+. ..++++|||||++|+|+|..|+.
T Consensus 124 ~~~~~~ipG~~-e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~ 202 (424)
T PTZ00318 124 RPNTFNIPGVE-ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRN 202 (424)
T ss_pred ccCCCCCCCHH-HcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHh
Confidence 46667899975 5788999999999988765421 12489999999999999999986
Q ss_pred ------CCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEe
Q 018320 63 ------NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 136 (358)
Q Consensus 63 ------~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a 136 (358)
.+.+||++++++++++. +++++.+.+++.|+++||+++++++|++++. + .+.+++|+++++|.+|++
T Consensus 203 ~~~~~~~~~~Vtlv~~~~~ll~~-~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~ 275 (424)
T PTZ00318 203 LNPELVEECKVTVLEAGSEVLGS-FDQALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWS 275 (424)
T ss_pred hhhcccccCEEEEEcCCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEc
Confidence 37899999999999986 8999999999999999999999999999964 2 366789999999999999
Q ss_pred eCCCCChhhhhc-cccc-ccCcEEEecccc-CCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320 137 IGIRPNTSLFEG-QLTL-EKGGIKVTGRLQ-SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 211 (358)
Q Consensus 137 ~G~~p~~~l~~~-~~~~-~~g~i~vd~~~~-t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 211 (358)
+|.+|+. +++. .+.. ++|+|.||++|| |+.|+|||+|||+..+.. ...+++..|++||+.+|.||.+..
T Consensus 276 ~G~~~~~-~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~-----~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 276 TGVGPGP-LTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEER-----PLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred cCCCCcc-hhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCC-----CCCCchHHHHHHHHHHHHHHHHHh
Confidence 9999985 4443 3555 578999999999 599999999999986431 123567889999999999998654
No 46
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.94 E-value=5.7e-24 Score=207.68 Aligned_cols=281 Identities=28% Similarity=0.288 Sum_probs=224.5
Q ss_pred CCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC-HHHHHHHHHH
Q 018320 14 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT-PKIASYYEEY 92 (358)
Q Consensus 14 G~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~-~~~~~~~~~~ 92 (358)
+...++++++++.+++..++..... .++++|+|+|++|+|+|..|+++|++||+++..+++++. +. +++.+.+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~-~~~~~~~~~~~~~ 187 (415)
T COG0446 111 ISDWEGVVTLRLREDAEALKGGAEP--PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ-LLDPEVAEELAEL 187 (415)
T ss_pred ccccCceEEECCHHHHHHHHHHHhc--cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh-hhhHHHHHHHHHH
Confidence 5666789999999999999888763 589999999999999999999999999999999999987 45 8999999999
Q ss_pred HHhCCCEEEcCCeeeEEEEcCCCcEEE-EEcCCCcEEecCeEEEeeCCCCChhhhhccc--cc-ccCcEEEeccccCC-C
Q 018320 93 YKSKGVKFVKGTVLSSFDVDSNGKVVA-VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQL--TL-EKGGIKVTGRLQSS-N 167 (358)
Q Consensus 93 l~~~gV~v~~~~~v~~i~~~~~g~v~~-v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~--~~-~~g~i~vd~~~~t~-~ 167 (358)
|+++||+++++..+.+++...+..... +...++..+++|.+++++|.+||..+..... .. .+|+|.||++++|+ .
T Consensus 188 l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~ 267 (415)
T COG0446 188 LEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKD 267 (415)
T ss_pred HHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCC
Confidence 999999999999999998633221111 5677888999999999999999988887764 33 67789999999997 9
Q ss_pred CcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc-eE-----
Q 018320 168 SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EV----- 241 (358)
Q Consensus 168 ~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-~~----- 241 (358)
++|||+|||+..+...++.....++++.|..+++.++.++.+. . .....+++.+.+.++.....+|.+.. +.
T Consensus 268 ~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 345 (415)
T COG0446 268 PDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-L-RIPGLLGTVISDVGDLCAASTGLTEGKERGIDVV 345 (415)
T ss_pred CCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc-c-ccccccCceEEEEcCeEEEEecCCcccccceeee
Confidence 9999999999988765555566889999999999999999877 2 45567899999999999999998875 21
Q ss_pred --EEEccCC------CCc--eEE--EEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHhhcCCcccC
Q 018320 242 --VHYGNFS------GTT--FGA--YWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 303 (358)
Q Consensus 242 --~~~g~~~------~~~--~~~--~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~yap 303 (358)
...+... ... ..+ +..++++++|+|+ -.....+..+..++..+.++.++..++ +.|+|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 415 (415)
T COG0446 346 LVVSGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQE-LEVLKRIGALALAIGLGDTVAELDALD---AIYAP 415 (415)
T ss_pred EEEeccCcccccccCCCCeEEEEEEEcCcccceehhhh-HHHHhhhhhhhhhhhhcCchhhhhhcc---cccCC
Confidence 1111110 111 111 2236788888887 222335677888889899888887766 66654
No 47
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.92 E-value=1.4e-23 Score=202.97 Aligned_cols=192 Identities=25% Similarity=0.298 Sum_probs=155.0
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHh-----cCCCCcEEEEcCcHHHHHHHHHHHh----CC--CcEEEEeeCC
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMK-----SCSGGNAVVIGGGYIGMECAASLVI----NK--INVTMVFPEA 74 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~-----~~~~~~vvVIGgG~~gle~A~~L~~----~g--~~Vtlv~~~~ 74 (358)
+|+.+++||. .++++++++++|+.++.+.+. ...+++++|||+|++|+|+|..|++ +| .+|+++ ..+
T Consensus 106 ~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~ 183 (364)
T TIGR03169 106 TTPLSGVEGA-ADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA 183 (364)
T ss_pred CCCCCCCCcc-cccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC
Confidence 4666778984 578999999999887433332 1135799999999999999999985 34 589999 667
Q ss_pred cccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhccccc-c
Q 018320 75 HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-E 153 (358)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~-~ 153 (358)
.+++. +++++...+.+.|++.||++++++.+++++. + .+.+.+|+++++|.+++++|.+|++.+....+.. +
T Consensus 184 ~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~---~---~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~ 256 (364)
T TIGR03169 184 SLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPD---G---ALILADGRTLPADAILWATGARAPPWLAESGLPLDE 256 (364)
T ss_pred ccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC---C---eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCC
Confidence 77775 7899999999999999999999999999853 2 4667789999999999999999997666555555 5
Q ss_pred cCcEEEeccccC-CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320 154 KGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 211 (358)
Q Consensus 154 ~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 211 (358)
+|+|.||+++|| +.|+|||+|||+..+... ....+..|++||+.+|.||....
T Consensus 257 ~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~-----~~~~~~~A~~~g~~~a~ni~~~l 310 (364)
T TIGR03169 257 DGFLRVDPTLQSLSHPHVFAAGDCAVITDAP-----RPKAGVYAVRQAPILAANLRASL 310 (364)
T ss_pred CCeEEECCccccCCCCCEEEeeeeeecCCCC-----CCCchHHHHHhHHHHHHHHHHHh
Confidence 789999999998 999999999999865321 12356789999999999997543
No 48
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.92 E-value=6.7e-24 Score=210.60 Aligned_cols=188 Identities=25% Similarity=0.273 Sum_probs=145.0
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHh-------cCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMK-------SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~-------~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
+|+.+++||.+.++|++..++.+...+....+ ...+++|+|||||++|+|+|..|.++|.+||++++.++...
T Consensus 230 ~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~ 309 (449)
T TIGR01316 230 LPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDM 309 (449)
T ss_pred CCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccC
Confidence 57777899999999997766544333321110 12578999999999999999999999999999998765211
Q ss_pred ccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---------CC-----------cEEecCeEEEeeC
Q 018320 79 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMVVVGIG 138 (358)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~vi~a~G 138 (358)
. ... ...+.+++.||++++++.++++..+++|++..+++. +| .++++|.||+++|
T Consensus 310 ~-~~~----~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG 384 (449)
T TIGR01316 310 T-ARV----EEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIG 384 (449)
T ss_pred C-CCH----HHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCC
Confidence 1 121 223557889999999999999976556666555542 23 2699999999999
Q ss_pred CCCChhhhhcc-ccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320 139 IRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208 (358)
Q Consensus 139 ~~p~~~l~~~~-~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 208 (358)
+.|++.+++.. +.+ ++|.|.||++++|+.|+|||+|||+..+ .++..|+.||+.||.+|.
T Consensus 385 ~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~----------~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 385 NGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGA----------ATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred CCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCc----------HHHHHHHHHHHHHHHHHH
Confidence 99999887654 665 5688999999999999999999998654 357789999999999985
No 49
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.90 E-value=2.4e-23 Score=194.66 Aligned_cols=269 Identities=25% Similarity=0.410 Sum_probs=212.1
Q ss_pred CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhC----CCcEEEEeeCCcccCccCCHHHHHHHHHHH
Q 018320 18 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCMARLFTPKIASYYEEYY 93 (358)
Q Consensus 18 ~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~----g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l 93 (358)
..+.++|.+.|+.++...+.+ .++|.|||+|++|.|+|..|.+. |.+|+-+......+...+++-++++-.+.+
T Consensus 326 ~kit~fr~p~DF~rlek~~ae--k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~eki 403 (659)
T KOG1346|consen 326 QKITYFRYPADFKRLEKGLAE--KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKI 403 (659)
T ss_pred hheeEEecchHHHHHHHhhhh--cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHH
Confidence 567889999999999988874 48999999999999999999874 778988877777788888888999999999
Q ss_pred HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc-ccc--ccCcEEEeccccCCCCcE
Q 018320 94 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL--EKGGIKVTGRLQSSNSSV 170 (358)
Q Consensus 94 ~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~--~~g~i~vd~~~~t~~~~V 170 (358)
++.||.++.+..|.++..+. +. ..++++||.++..|.|++|+|-.||++++... ++. .-|++.||..++. ..||
T Consensus 404 r~~GV~V~pna~v~sv~~~~-~n-l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-r~Nv 480 (659)
T KOG1346|consen 404 RKGGVDVRPNAKVESVRKCC-KN-LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-RENV 480 (659)
T ss_pred HhcCceeccchhhhhhhhhc-cc-eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-ccce
Confidence 99999999999999987532 33 46889999999999999999999999999865 665 4589999998886 4799
Q ss_pred EEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEec-CceEEEeecccce---------
Q 018320 171 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGDNVGE--------- 240 (358)
Q Consensus 171 yAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~-~~~~~~~G~~~~~--------- 240 (358)
|++||++.+.+.+.|. +++.|+.+|.-.||.|+.||.|.. .++.....||+... ++.+..+|+-...
T Consensus 481 wvAGdaacF~D~~LGr-RRVehhdhavvSGRLAGENMtgAa--kpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~ 557 (659)
T KOG1346|consen 481 WVAGDAACFEDGVLGR-RRVEHHDHAVVSGRLAGENMTGAA--KPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFAL 557 (659)
T ss_pred eeecchhhhhcccccc-eeccccccceeeceeccccccccc--CCccccceeeeccCcccccceeeecccCCCcceeeec
Confidence 9999999999988775 567899999999999999999876 46777778887543 1223333321100
Q ss_pred ---------EEEE--------------------c--------cCC-CCceE---EEEeeCCeEEEEEEeCCCHHHHHHHH
Q 018320 241 ---------VVHY--------------------G--------NFS-GTTFG---AYWVNKGRLVGSFLEGGTKEEYEAIA 279 (358)
Q Consensus 241 ---------~~~~--------------------g--------~~~-~~~~~---~~~~~~g~ilGa~~vg~~~~~~~~~a 279 (358)
+-.. + ++. ...|+ .||++|++|+|..+++- =.+|....
T Consensus 558 p~s~~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN~-Fnr~~~AR 636 (659)
T KOG1346|consen 558 PSSATRVDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWNL-FNRIGLAR 636 (659)
T ss_pred cccccchhhhhhccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehhh-hccchhhH
Confidence 0000 0 011 11254 37789999999999873 23677778
Q ss_pred HHHHcCCCcccHHHHh
Q 018320 280 KATRLQPVVEDLAELE 295 (358)
Q Consensus 280 ~ai~~~~~~~dl~~l~ 295 (358)
+.|..+...+||.+..
T Consensus 637 ~II~d~kk~ddlnEvA 652 (659)
T KOG1346|consen 637 TIINDNKKYDDLNEVA 652 (659)
T ss_pred HHhccccchhhHHHHH
Confidence 8899999999987754
No 50
>PRK10262 thioredoxin reductase; Provisional
Probab=99.90 E-value=5.2e-23 Score=195.71 Aligned_cols=183 Identities=24% Similarity=0.273 Sum_probs=140.3
Q ss_pred CCccCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320 6 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82 (358)
Q Consensus 6 ~P~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~ 82 (358)
.|+.+++||.+ ..+++.....+.. . ..+++++|||+|++|+|+|..|++.+.+||++++.+.+. .+
T Consensus 116 ~~~~~~i~g~~~~~~~~v~~~~~~~~~------~--~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~ 184 (321)
T PRK10262 116 SARYLGLPSEEAFKGRGVSACATCDGF------F--YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AE 184 (321)
T ss_pred CCCCCCCCCHHHcCCCcEEEeecCCHH------H--cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CC
Confidence 35666788854 2345544332221 1 158999999999999999999999999999999987652 45
Q ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC------cEEecCeEEEeeCCCCChhhhhcccccccCc
Q 018320 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG------NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGG 156 (358)
Q Consensus 83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g------~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~ 156 (358)
+.+.+.+.+.|++.||++++++.+++++. +++.+..+++.++ +++++|.|++++|++|++.++...+.+++|+
T Consensus 185 ~~~~~~~~~~l~~~gV~i~~~~~v~~v~~-~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~ 263 (321)
T PRK10262 185 KILIKRLMDKVENGNIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGY 263 (321)
T ss_pred HHHHHHHHhhccCCCeEEEeCCEEEEEEc-CCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCE
Confidence 77788888999999999999999999975 3333444554432 4799999999999999999887666667789
Q ss_pred EEEec-----cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 157 IKVTG-----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 157 i~vd~-----~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
|.||+ +++|+.|+|||+|||+..+. ..+..|+.+|..||..|..
T Consensus 264 i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~---------~~~~~A~~~g~~Aa~~~~~ 312 (321)
T PRK10262 264 IKVQSGIHGNATQTSIPGVFAAGDVMDHIY---------RQAITSAGTGCMAALDAER 312 (321)
T ss_pred EEECCCCcccccccCCCCEEECeeccCCCc---------ceEEEEehhHHHHHHHHHH
Confidence 99997 78999999999999997532 1233477788888877643
No 51
>PRK12831 putative oxidoreductase; Provisional
Probab=99.90 E-value=1.8e-22 Score=200.96 Aligned_cols=188 Identities=23% Similarity=0.281 Sum_probs=143.5
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHH------hcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc-ccC
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVM------KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CMA 78 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l------~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~-~l~ 78 (358)
+|+.+++||.+.++|++..++.+...+.... ....+++|+|||||++|+|+|..|.++|.+||++.+.+. .++
T Consensus 240 ~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~ 319 (464)
T PRK12831 240 LPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELP 319 (464)
T ss_pred CCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCC
Confidence 5777889999999999776655443322110 012579999999999999999999999999999998653 233
Q ss_pred ccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC------------------CCc--EEecCeEEEeeC
Q 018320 79 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR------------------DGN--RLPTDMVVVGIG 138 (358)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~------------------~g~--~i~~D~vi~a~G 138 (358)
. ...+ + +.+++.||++++++.++++..+++|++..+++. +|+ ++++|.||+++|
T Consensus 320 a-~~~e----~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG 393 (464)
T PRK12831 320 A-RVEE----V-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLG 393 (464)
T ss_pred C-CHHH----H-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCC
Confidence 2 1111 1 335678999999999999976556766555432 222 699999999999
Q ss_pred CCCChhhhhc--cccc-ccCcEEEecc-ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 139 IRPNTSLFEG--QLTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 139 ~~p~~~l~~~--~~~~-~~g~i~vd~~-~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
+.|++.++.. ++.+ ++|.|.||++ ++||.|+|||+|||+..+ ..+..|+.+|+.||.+|..
T Consensus 394 ~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 394 TSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGA----------ATVILAMGAGKKAAKAIDE 458 (464)
T ss_pred CCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence 9999988764 3555 5688999988 999999999999998754 3467899999999999854
No 52
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.87 E-value=8.3e-22 Score=198.88 Aligned_cols=178 Identities=26% Similarity=0.394 Sum_probs=136.3
Q ss_pred CccCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCH
Q 018320 7 LEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP 83 (358)
Q Consensus 7 P~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~ 83 (358)
|+.+++||.+ .++++.....+.. + ..+++++|||||++|+|+|..|++.|.+||++++.+.+..
T Consensus 323 ~~~~~ipG~~~~~~~~v~~~~~~~~~------~--~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~----- 389 (515)
T TIGR03140 323 WRKLGVPGEKEYIGKGVAYCPHCDGP------F--FKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA----- 389 (515)
T ss_pred cCCCCCCCHHHcCCCeEEEeeccChh------h--cCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-----
Confidence 5666788852 2455554333221 1 1578999999999999999999999999999998876532
Q ss_pred HHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCC---C--cEEecCeEEEeeCCCCChhhhhccccc-ccCc
Q 018320 84 KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGG 156 (358)
Q Consensus 84 ~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~ 156 (358)
...+.+.+++ +||++++++.+++++. +++++..+.+.+ + +++++|.|++++|++|++++++..+.. .+|+
T Consensus 390 --~~~l~~~l~~~~gV~i~~~~~v~~i~~-~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~ 466 (515)
T TIGR03140 390 --DKVLQDKLKSLPNVDILTSAQTTEIVG-DGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGE 466 (515)
T ss_pred --hHHHHHHHhcCCCCEEEECCeeEEEEc-CCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCe
Confidence 2345666766 6999999999999975 345555566543 2 469999999999999999988765555 5688
Q ss_pred EEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 157 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 157 i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
|.||+++||++|+|||+|||+..+.. .+..|+.+|..||.++..
T Consensus 467 I~vd~~~~Ts~p~IyAaGDv~~~~~~---------~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 467 IVIDERGRTSVPGIFAAGDVTTVPYK---------QIIIAMGEGAKAALSAFD 510 (515)
T ss_pred EEECCCCCCCCCCEEEcccccCCccc---------eEEEEEccHHHHHHHHHH
Confidence 99999999999999999999986532 233578899999888754
No 53
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.87 E-value=4.2e-21 Score=179.89 Aligned_cols=177 Identities=24% Similarity=0.328 Sum_probs=135.1
Q ss_pred CCccCCCCCCCC---CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320 6 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82 (358)
Q Consensus 6 ~P~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~ 82 (358)
+|+.+++||.+. .++++....++ .. .++++++|||+|++|+|+|..|++.+.+|+++++.+.+. .+
T Consensus 111 ~~~~~~i~g~~~~~~~~~~~~~~~~~------~~--~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~---~~ 179 (300)
T TIGR01292 111 SARKLGIPGEDEFLGRGVSYCATCDG------PF--FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR---AE 179 (300)
T ss_pred CcccCCCCChhhcCCccEEEeeecCh------hh--cCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC---cC
Confidence 466667888642 34544333222 11 157899999999999999999999999999999987653 23
Q ss_pred HHHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcC-----CCcEEecCeEEEeeCCCCChhhhhccccc-ccC
Q 018320 83 PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLR-----DGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKG 155 (358)
Q Consensus 83 ~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~-----~g~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g 155 (358)
+ .+.+.++++ ||++++++.+++++. ++.+..+++. +++++++|.+++++|++|+.++++..+.+ .+|
T Consensus 180 ~----~~~~~l~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g 253 (300)
T TIGR01292 180 K----ILLDRLRKNPNIEFLWNSTVKEIVG--DNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGG 253 (300)
T ss_pred H----HHHHHHHhCCCeEEEeccEEEEEEc--cCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCC
Confidence 3 345566776 999999999999975 2344444432 23579999999999999999888765544 568
Q ss_pred cEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320 156 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208 (358)
Q Consensus 156 ~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 208 (358)
++.||++++|+.|+||++|||+.... ..+..|+.||+.||.+|.
T Consensus 254 ~i~v~~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 254 YIVTDEGMRTSVPGVFAAGDVRDKGY---------RQAVTAAGDGCIAALSAE 297 (300)
T ss_pred cEEECCCCccCCCCEEEeecccCcch---------hhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999997421 357789999999999985
No 54
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.87 E-value=6.5e-21 Score=183.68 Aligned_cols=185 Identities=26% Similarity=0.341 Sum_probs=137.3
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHH------h---cCCCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCCc
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVM------K---SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH 75 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l------~---~~~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~~ 75 (358)
.|..+++||.+.+++++.. +++..+.... . ...+++++|||+|++|+|+|..|.++|.+ ||++++.+.
T Consensus 130 ~~~~~~ipg~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 130 KSRKLGIPGEDLPGVYSAL--EYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CCCcCCCCCccccCceeHH--HHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 3556678998888888632 2333322211 0 11268999999999999999999999997 999998764
Q ss_pred ccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc--------------------CCCcEEecCeEEE
Q 018320 76 CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--------------------RDGNRLPTDMVVV 135 (358)
Q Consensus 76 ~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~--------------------~~g~~i~~D~vi~ 135 (358)
.... .. ..+.+.|+++||++++++.+++++. ++.+..+++ .+++++++|.+|+
T Consensus 208 ~~~~-~~----~~~~~~l~~~gi~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~ 280 (352)
T PRK12770 208 NEAP-AG----KYEIERLIARGVEFLELVTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVF 280 (352)
T ss_pred hhCC-CC----HHHHHHHHHcCCEEeeccCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEE
Confidence 3221 11 3344568899999999999999974 233333332 1235799999999
Q ss_pred eeCCCCChhhhhc--cccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 136 GIGIRPNTSLFEG--QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 136 a~G~~p~~~l~~~--~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
++|++|++.+... .+.+ .+++|.||++++|+.|+|||+|||+..+ ..+..|+.||+.||.+|..
T Consensus 281 a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 281 AIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred CcccCCCchhhhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHH
Confidence 9999999988764 3545 5678999999999999999999998754 2467899999999999854
No 55
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.86 E-value=7.7e-21 Score=199.85 Aligned_cols=188 Identities=27% Similarity=0.327 Sum_probs=143.1
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHH------hcCCCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCCc-cc
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVM------KSCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH-CM 77 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l------~~~~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~~-~l 77 (358)
+|+.+++||.+.++|++..++.+...+.... ....+++|+|||||++|+|+|..+.++|.+ ||++++.+. .+
T Consensus 529 ~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~ 608 (752)
T PRK12778 529 LPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEM 608 (752)
T ss_pred CCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccC
Confidence 5778889999999999766544433222111 012579999999999999999999999997 999998764 23
Q ss_pred CccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---------CC-----------cEEecCeEEEee
Q 018320 78 ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMVVVGI 137 (358)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~vi~a~ 137 (358)
+. ...+ .+.+++.||++++++.+.++..+++|++..+++. +| .++++|.||+|+
T Consensus 609 ~~-~~~e-----~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~ 682 (752)
T PRK12778 609 PA-RLEE-----VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSV 682 (752)
T ss_pred CC-CHHH-----HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECc
Confidence 32 1111 1346788999999999999976566766555542 22 259999999999
Q ss_pred CCCCChhhhhc--cccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 138 GIRPNTSLFEG--QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 138 G~~p~~~l~~~--~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
|++|++.++.. .+.+ .+|.|.||++++|+.|+|||+|||+..+ ..+..|+.+|+.||.+|..
T Consensus 683 G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~----------~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 683 GVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGG----------ATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred CCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCc----------HHHHHHHHHHHHHHHHHHH
Confidence 99999887654 3555 5688999999999999999999998754 3467899999999999864
No 56
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.86 E-value=1.7e-20 Score=186.86 Aligned_cols=187 Identities=27% Similarity=0.290 Sum_probs=137.2
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHH-HHhcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCc-ccCccCC
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVN-VMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-CMARLFT 82 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~-~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~-~l~~~~~ 82 (358)
.|+.+++||.+.++|++....-....... ......+++|+|||||++|+|+|..|.+.|. +||++++.+. .++. .
T Consensus 237 ~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~ 314 (457)
T PRK11749 237 LPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--S 314 (457)
T ss_pred CCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--C
Confidence 46677899998888886433222211100 0011157999999999999999999999998 8999998654 3432 2
Q ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc-------------------CCCcEEecCeEEEeeCCCCCh
Q 018320 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-------------------RDGNRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~-------------------~~g~~i~~D~vi~a~G~~p~~ 143 (358)
.. ..+.+++.||++++++.+.++..++ +.+..+++ .+++++++|.||+++|.+|+.
T Consensus 315 ~~----~~~~~~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 389 (457)
T PRK11749 315 EE----EVEHAKEEGVEFEWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP 389 (457)
T ss_pred HH----HHHHHHHCCCEEEecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence 22 2456788999999999999998633 22222322 123479999999999999998
Q ss_pred hhhhc--cccc-ccCcEEEec-cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 144 SLFEG--QLTL-EKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 144 ~l~~~--~~~~-~~g~i~vd~-~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
.++.. .+.+ ++|+|.||+ +++|+.|+|||+|||+..+ .++..|+.||+.||.+|..
T Consensus 390 ~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~----------~~~~~A~~~G~~aA~~I~~ 449 (457)
T PRK11749 390 LILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGA----------ATVVWAVGDGKDAAEAIHE 449 (457)
T ss_pred hhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence 87653 2444 578999998 8999999999999999542 3577899999999999864
No 57
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.86 E-value=1.3e-21 Score=184.24 Aligned_cols=191 Identities=23% Similarity=0.370 Sum_probs=152.8
Q ss_pred CCCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcC---------------CCCcEEEEcCcHHHHHHHHHHHhC------
Q 018320 5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVIN------ 63 (358)
Q Consensus 5 ~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~---------------~~~~vvVIGgG~~gle~A~~L~~~------ 63 (358)
-+|+.|+|||.. ++.+.++-++|+++++..+-.+ .--++||||||+.|+|+|..|+..
T Consensus 168 A~~~TFgipGV~-e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~ 246 (491)
T KOG2495|consen 168 AEPNTFGIPGVE-ENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLR 246 (491)
T ss_pred CCCCCCCCCchh-hchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHH
Confidence 368899999985 7888999999999997654321 123799999999999999999852
Q ss_pred --------CCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeE
Q 018320 64 --------KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMV 133 (358)
Q Consensus 64 --------g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~v 133 (358)
-.+||+++..+++|+. ||..+.++.++.+.+.||++.+++.|..++. .. ..+...+| +++++-++
T Consensus 247 k~yp~l~~~i~vtLiEA~d~iL~m-Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~---~~-I~~~~~~g~~~~iPYG~l 321 (491)
T KOG2495|consen 247 KIYPELKKDIKVTLIEAADHILNM-FDKRLVEYAENQFVRDGIDLDTGTMVKKVTE---KT-IHAKTKDGEIEEIPYGLL 321 (491)
T ss_pred HhhhcchhheEEEeeccchhHHHH-HHHHHHHHHHHHhhhccceeecccEEEeecC---cE-EEEEcCCCceeeecceEE
Confidence 4689999999999996 9999999999999999999999999999863 12 23444555 57999999
Q ss_pred EEeeCCCCChh---hhhcccccccCcEEEeccccC-CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320 134 VVGIGIRPNTS---LFEGQLTLEKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208 (358)
Q Consensus 134 i~a~G~~p~~~---l~~~~~~~~~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 208 (358)
+|++|..|..- |.....+-.+.++.||++||. +.+||||+|||+..+. ..++++.|.+||.++|+++-
T Consensus 322 VWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~-------~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 322 VWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRG-------LKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred EecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEecccccccc-------CccHHHHHHHHHHHHHHHHH
Confidence 99999887653 222211113458999999998 8999999999994332 23689999999999999874
No 58
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.85 E-value=3.2e-20 Score=195.45 Aligned_cols=200 Identities=27% Similarity=0.363 Sum_probs=141.8
Q ss_pred CCccCCCCCCCCCCeEE-ecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhC-C-CcEEEEeeCC-cccCccC
Q 018320 6 KLEEFGLSGSDAENVCY-LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN-K-INVTMVFPEA-HCMARLF 81 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~-l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~-g-~~Vtlv~~~~-~~l~~~~ 81 (358)
.|..+++||.+ +++++ +..+.+..+....+. .+++|+|||||++|+|+|..+.+. | .+||++.|++ ..++. .
T Consensus 635 ~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~--~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~ 710 (1019)
T PRK09853 635 KNGGLKLEGGN-QNVIKALPFLEEYKNKGTALK--LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-W 710 (1019)
T ss_pred CCCCCCCCCcc-CCceehHHHHHHHhhhccccc--CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-c
Confidence 45567788876 56663 222222212222222 589999999999999999999888 4 4899999876 34553 3
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcE----------------EEEEcCCCcEEecCeEEEeeCCCCChhh
Q 018320 82 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV----------------VAVNLRDGNRLPTDMVVVGIGIRPNTSL 145 (358)
Q Consensus 82 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v----------------~~v~~~~g~~i~~D~vi~a~G~~p~~~l 145 (358)
++++ .+.+ +.||++++.+.+.+++. ++++ ..+...++.++++|.||+|+|.+|++++
T Consensus 711 ~eEl----e~Al-eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel 783 (1019)
T PRK09853 711 REEY----EEAL-EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL 783 (1019)
T ss_pred HHHH----HHHH-HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH
Confidence 3333 3333 46999999998888863 2322 1222334467999999999999999998
Q ss_pred hhcc-ccc-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE
Q 018320 146 FEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFY 223 (358)
Q Consensus 146 ~~~~-~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~ 223 (358)
+... +.. ++|+|.||++++|+.|+|||+|||+..+ ..+..|+.||+.||.+|++... ..+...|.++
T Consensus 784 le~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp----------~tvv~Ai~qGr~AA~nI~~~~~-~~~~~~~~~~ 852 (1019)
T PRK09853 784 LKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP----------STIVAAIADARRAADAILSREG-IRSHQNDKYW 852 (1019)
T ss_pred HHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCc----------hHHHHHHHHHHHHHHHHhhhcC-CCcccccccc
Confidence 8654 555 5688999999999999999999998654 2467899999999999997653 2444555555
Q ss_pred EEec
Q 018320 224 SRVF 227 (358)
Q Consensus 224 ~~~~ 227 (358)
+..+
T Consensus 853 ~~~~ 856 (1019)
T PRK09853 853 NNVE 856 (1019)
T ss_pred cccc
Confidence 5444
No 59
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.85 E-value=2.7e-20 Score=189.35 Aligned_cols=178 Identities=24% Similarity=0.344 Sum_probs=132.9
Q ss_pred CCccCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320 6 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82 (358)
Q Consensus 6 ~P~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~ 82 (358)
+|+.+++||.+ ..+++++.+.++. . ..+++++|||||++|+|+|..|+++|.+||++++.+.+.. +
T Consensus 113 ~p~~~~ipG~~~~~~~~v~~~~~~~~~------~--~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~ 181 (555)
T TIGR03143 113 SPRKLGFPGEEEFTGRGVAYCATCDGE------F--FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---A 181 (555)
T ss_pred ccCCCCCCCHHHhCCceEEEEeecChh------h--cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---C
Confidence 46667788853 3456655443321 1 1589999999999999999999999999999999886532 3
Q ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE---cCCCcEE----ecCe----EEEeeCCCCChhhhhcccc
Q 018320 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGNRL----PTDM----VVVGIGIRPNTSLFEGQLT 151 (358)
Q Consensus 83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~---~~~g~~i----~~D~----vi~a~G~~p~~~l~~~~~~ 151 (358)
.... .+.++++||++++++.|+++.. ++.+..+. ..+|++. ++|. |++++|++|++.+++..+.
T Consensus 182 ~~~~---~~~~~~~gV~i~~~~~V~~i~~--~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~ 256 (555)
T TIGR03143 182 KLIA---EKVKNHPKIEVKFNTELKEATG--DDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVE 256 (555)
T ss_pred HHHH---HHHHhCCCcEEEeCCEEEEEEc--CCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcc
Confidence 3322 3334557999999999999974 33333332 3456542 3676 9999999999999887666
Q ss_pred c-ccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320 152 L-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208 (358)
Q Consensus 152 ~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 208 (358)
+ ++|+|.||++|+|+.|+|||+|||+.... ..+..|..||+.||.+|.
T Consensus 257 l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---------~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 257 LDKRGYIPTNEDMETNVPGVYAAGDLRPKEL---------RQVVTAVADGAIAATSAE 305 (555)
T ss_pred cCCCCeEEeCCccccCCCCEEEceeccCCCc---------chheeHHhhHHHHHHHHH
Confidence 6 57889999999999999999999975321 345679999999999984
No 60
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.84 E-value=2.6e-20 Score=188.10 Aligned_cols=179 Identities=25% Similarity=0.387 Sum_probs=135.7
Q ss_pred CCccCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCC
Q 018320 6 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 82 (358)
Q Consensus 6 ~P~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~ 82 (358)
+|+.+++||.+ ..++++....+.. . .++++++|||||++|+|+|..|+..+.+||++++.+.+.. +
T Consensus 321 ~~r~~~ipG~~~~~~~~v~~~~~~~~~------~--~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~ 389 (517)
T PRK15317 321 RWRNMNVPGEDEYRNKGVAYCPHCDGP------L--FKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D 389 (517)
T ss_pred CcCCCCCCCHHHhcCceEEEeeccCch------h--cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c
Confidence 35556788753 2455544322211 1 1589999999999999999999999999999999876532 2
Q ss_pred HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcC---CC--cEEecCeEEEeeCCCCChhhhhccccc-ccC
Q 018320 83 PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKG 155 (358)
Q Consensus 83 ~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g 155 (358)
..+.+.+.+ .||++++++.+++++. +++++..+++. +| +++++|.+++++|.+|++++++..+.+ ++|
T Consensus 390 ----~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g 464 (517)
T PRK15317 390 ----QVLQDKLRSLPNVTIITNAQTTEVTG-DGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRG 464 (517)
T ss_pred ----HHHHHHHhcCCCcEEEECcEEEEEEc-CCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCC
Confidence 344556665 6999999999999986 34565556554 23 359999999999999999988765555 568
Q ss_pred cEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 156 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 156 ~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
+|.||+++||+.|+|||+|||+..+.. .+..|+.+|..||.++..
T Consensus 465 ~i~vd~~l~Ts~p~IyAaGDv~~~~~k---------~~~~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 465 EIIVDARGATSVPGVFAAGDCTTVPYK---------QIIIAMGEGAKAALSAFD 509 (517)
T ss_pred cEEECcCCCCCCCCEEECccccCCCCC---------EEEEhhhhHHHHHHHHHH
Confidence 899999999999999999999986532 345678888888877654
No 61
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.84 E-value=5.7e-20 Score=183.66 Aligned_cols=194 Identities=26% Similarity=0.340 Sum_probs=136.6
Q ss_pred CCccCCCCCCCCCCeEEecCHHH-HHH-HHHH--H--hcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcccC
Q 018320 6 KLEEFGLSGSDAENVCYLRDLAD-ANR-LVNV--M--KSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMA 78 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~d-a~~-i~~~--l--~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~l~ 78 (358)
.|+.+++||.+.++|++..++-. +.. +... . ....+++|+|||||++|+|+|..+.++|. +||++++.+.+..
T Consensus 240 ~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~ 319 (471)
T PRK12810 240 KPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPS 319 (471)
T ss_pred CCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcc
Confidence 46677899999999986432211 100 0000 0 01257999999999999999999999886 7997766543322
Q ss_pred ccCCH----HH-HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-----CC---------cEEecCeEEEeeCC
Q 018320 79 RLFTP----KI-ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----DG---------NRLPTDMVVVGIGI 139 (358)
Q Consensus 79 ~~~~~----~~-~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-----~g---------~~i~~D~vi~a~G~ 139 (358)
..++. .. .....+.+++.||++++++.+++|.. +++++..+++. +| .++++|.||+++|.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 320 RRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred ccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 11110 01 11134567788999999999999975 46666555432 22 46999999999999
Q ss_pred CCCh-hhhhcc-ccc-ccCcEEEe-ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320 140 RPNT-SLFEGQ-LTL-EKGGIKVT-GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 210 (358)
Q Consensus 140 ~p~~-~l~~~~-~~~-~~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~ 210 (358)
+|+. .+++.. +.. ++|.|.+| ++++|+.|+|||+|||+..+ .++..|+.||+.||.+|...
T Consensus 399 ~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~----------~~~~~Av~~G~~AA~~i~~~ 463 (471)
T PRK12810 399 TGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQ----------SLVVWAIAEGRQAARAIDAY 463 (471)
T ss_pred CCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCc----------hhHHHHHHHHHHHHHHHHHH
Confidence 9985 465543 555 56889998 79999999999999999743 24668999999999998643
No 62
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.83 E-value=2e-19 Score=191.39 Aligned_cols=190 Identities=22% Similarity=0.247 Sum_probs=139.7
Q ss_pred CCCccCCCCCCCCCCeEEecCHHHHHHHHHHH--------hcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc-
Q 018320 5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVM--------KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH- 75 (358)
Q Consensus 5 ~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l--------~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~- 75 (358)
.+|+.++|||.++++|++..++.+...+.... ....+|+|+|||||.+|+++|..+.++|.+||++.+++.
T Consensus 403 ~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~ 482 (944)
T PRK12779 403 GLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKS 482 (944)
T ss_pred CCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcc
Confidence 46888999999999999765554433322111 112579999999999999999999999999999998753
Q ss_pred ccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCC-CcEEEEEc---------C--------CC--cEEecCeEEE
Q 018320 76 CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNL---------R--------DG--NRLPTDMVVV 135 (358)
Q Consensus 76 ~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-g~v~~v~~---------~--------~g--~~i~~D~vi~ 135 (358)
.+|. . ...++. ..+.||++++++.+++|..+++ +.+..+++ . +| .++++|.||+
T Consensus 483 ~mpa-~----~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~ 556 (944)
T PRK12779 483 EMPA-R----VEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIM 556 (944)
T ss_pred cccc-c----HHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEE
Confidence 3332 1 122233 3467999999999999976433 34443322 1 12 3599999999
Q ss_pred eeCCCCChhhhhc--cccc-ccCcEEEec-cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320 136 GIGIRPNTSLFEG--QLTL-EKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 210 (358)
Q Consensus 136 a~G~~p~~~l~~~--~~~~-~~g~i~vd~-~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~ 210 (358)
|+|+.|+..+... .++. ++|.|.||+ .++||.|+|||+|||+..+ .++..|+.+|+.||.+|...
T Consensus 557 AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~~ 625 (944)
T PRK12779 557 ALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG----------STAIRAAGDGQAAAKEIVGE 625 (944)
T ss_pred cCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999765443 2454 568899996 5899999999999999754 25678999999999998653
No 63
>PRK13984 putative oxidoreductase; Provisional
Probab=99.83 E-value=2.9e-19 Score=183.91 Aligned_cols=184 Identities=24% Similarity=0.244 Sum_probs=133.2
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhc-----CCCCcEEEEcCcHHHHHHHHHHHhCCC------cEEEEeeC-
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-----CSGGNAVVIGGGYIGMECAASLVINKI------NVTMVFPE- 73 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~-----~~~~~vvVIGgG~~gle~A~~L~~~g~------~Vtlv~~~- 73 (358)
.|+.++|||.+.+++++ ..+.+..+...+.. ..+++++|||||++|+|+|..|.+++. +|+++...
T Consensus 380 ~~r~l~i~G~~~~gv~~--a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r 457 (604)
T PRK13984 380 LGRSTRIPGTDHPDVIQ--ALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLER 457 (604)
T ss_pred CCccCCCCCcCCcCeEe--HHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEecccc
Confidence 36777899998888885 34444444433321 136899999999999999999998853 78887432
Q ss_pred -CcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC--------C-----------CcEEecCeE
Q 018320 74 -AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--------D-----------GNRLPTDMV 133 (358)
Q Consensus 74 -~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~--------~-----------g~~i~~D~v 133 (358)
...++. +. .+ +.+ +.+.||++++++.++++.. +++++..+++. + .+++++|.|
T Consensus 458 ~~~~~~~--~~--~e-~~~-~~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~V 530 (604)
T PRK13984 458 TFEEMPA--DM--EE-IEE-GLEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMV 530 (604)
T ss_pred CcccCCC--CH--HH-HHH-HHHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEE
Confidence 222332 12 11 222 3467999999999988865 45655554432 1 236999999
Q ss_pred EEeeCCCCChhhhhcc----cccccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 134 VVGIGIRPNTSLFEGQ----LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 134 i~a~G~~p~~~l~~~~----~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
|+++|++|+++++... +..++|.|.||++++|++|+|||+|||+..+. ...|+.+|+.||.+|..
T Consensus 531 i~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~-----------~v~Ai~~G~~AA~~I~~ 599 (604)
T PRK13984 531 VEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPD-----------IIHGVADGYWAAEGIDM 599 (604)
T ss_pred EEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCchH-----------HHHHHHHHHHHHHHHHH
Confidence 9999999999877532 33467889999999999999999999997642 34689999999999853
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.82 E-value=5.8e-19 Score=176.04 Aligned_cols=186 Identities=26% Similarity=0.411 Sum_probs=135.7
Q ss_pred ccCCCCCCCCCCeEEecCHHH--HHHHHHH-------HhcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcc-
Q 018320 8 EEFGLSGSDAENVCYLRDLAD--ANRLVNV-------MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC- 76 (358)
Q Consensus 8 ~~~~ipG~~~~~v~~l~~~~d--a~~i~~~-------l~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~- 76 (358)
..++|||.+.++|++..++.. ...+... +....+++++|||+|++|+++|..+.++|. +||++++.+..
T Consensus 240 ~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~ 319 (467)
T TIGR01318 240 MRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEAN 319 (467)
T ss_pred CcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCccc
Confidence 346799999999996533211 1111000 001246899999999999999999999996 79999987653
Q ss_pred cCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---------CC-----------cEEecCeEEEe
Q 018320 77 MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMVVVG 136 (358)
Q Consensus 77 l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~vi~a 136 (358)
++. .+.++ +.+++.||++++++.++++..++++++..+++. +| .++++|.||++
T Consensus 320 ~~~-~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a 393 (467)
T TIGR01318 320 MPG-SRREV-----ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMA 393 (467)
T ss_pred CCC-CHHHH-----HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEEC
Confidence 443 33322 346778999999999999976556666544431 12 36999999999
Q ss_pred eCCCCCh-hhhhc-cccc-ccCcEEEe----ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 137 IGIRPNT-SLFEG-QLTL-EKGGIKVT----GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 137 ~G~~p~~-~l~~~-~~~~-~~g~i~vd----~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
+|++|+. .++.. .+.. ++|.|.|| ++++|+.|+|||+|||+..+. ++..|+.+|+.||.+|..
T Consensus 394 ~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~----------~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 394 FGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD----------LVVTAVAEGRQAAQGILD 463 (467)
T ss_pred CcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCcc----------HHHHHHHHHHHHHHHHHH
Confidence 9999985 44443 2555 56889999 689999999999999987542 466899999999999853
No 65
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.82 E-value=2.9e-19 Score=184.76 Aligned_cols=184 Identities=24% Similarity=0.339 Sum_probs=132.6
Q ss_pred CccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCc-ccCccCCHH
Q 018320 7 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-CMARLFTPK 84 (358)
Q Consensus 7 P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~-~l~~~~~~~ 84 (358)
+..+++||.+.++|++-.++-. .....-....+++|+|||||++|+|+|..+.+.|. +||++.+.+. .++. .+.+
T Consensus 291 ~~~~~ipG~~~~gv~~~~~~l~--~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~~e 367 (652)
T PRK12814 291 ASKMGIPGEELPGVISGIDFLR--NVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NRAE 367 (652)
T ss_pred CCCCCCCCcCcCCcEeHHHHHH--HhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH
Confidence 4456799998888874322111 11100011258999999999999999999999997 5999998764 4553 3333
Q ss_pred HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcE--EEEEcC---------------CCc--EEecCeEEEeeCCCCChhh
Q 018320 85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV--VAVNLR---------------DGN--RLPTDMVVVGIGIRPNTSL 145 (358)
Q Consensus 85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v--~~v~~~---------------~g~--~i~~D~vi~a~G~~p~~~l 145 (358)
+ .+. .+.||++++++.+.++..+ ++.+ ..+.+. +|+ ++++|.||+++|..|++++
T Consensus 368 i----~~a-~~eGV~i~~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~l 441 (652)
T PRK12814 368 I----EEA-LAEGVSLRELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPI 441 (652)
T ss_pred H----HHH-HHcCCcEEeccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccc
Confidence 3 222 3579999999999998753 3322 222111 122 5899999999999999988
Q ss_pred hhcc-ccc-ccCcEEEec-cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 146 FEGQ-LTL-EKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 146 ~~~~-~~~-~~g~i~vd~-~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
+... +.+ .+|.|.||+ +++|+.|+|||+|||+..+ .++..|+.||+.||.+|..
T Consensus 442 l~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~----------~~v~~Ai~~G~~AA~~I~~ 498 (652)
T PRK12814 442 AEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGA----------DIAINAVEQGKRAAHAIDL 498 (652)
T ss_pred ccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence 7643 555 568899996 6899999999999998654 3467899999999999864
No 66
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.82 E-value=3.6e-19 Score=190.97 Aligned_cols=188 Identities=21% Similarity=0.265 Sum_probs=139.6
Q ss_pred CCCccCCCCCCCCCCeEEecCHHHHHHHHHH-----H--hcCCCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCCcc
Q 018320 5 LKLEEFGLSGSDAENVCYLRDLADANRLVNV-----M--KSCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHC 76 (358)
Q Consensus 5 ~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~-----l--~~~~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~~~ 76 (358)
.+|+.++|||.+.++|++..++.+...+... . ....+|+|+|||||++|+++|..+.++|.+ |+++.+....
T Consensus 528 ~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~ 607 (1006)
T PRK12775 528 GAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEA 607 (1006)
T ss_pred CCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcc
Confidence 3578889999999999976554443332110 0 012579999999999999999999999985 7888765432
Q ss_pred -cCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-----------------CC--cEEecCeEEEe
Q 018320 77 -MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------------DG--NRLPTDMVVVG 136 (358)
Q Consensus 77 -l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-----------------~g--~~i~~D~vi~a 136 (358)
++. .+. -.+.+++.||++++++.++++..+++|++..+++. +| .++++|.||+|
T Consensus 608 em~a--~~~----e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~A 681 (1006)
T PRK12775 608 EAPA--RIE----EIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYA 681 (1006)
T ss_pred cCCC--CHH----HHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEEC
Confidence 221 111 12356778999999999999976567776655432 12 25999999999
Q ss_pred eCCCCChhhhhc--cccc-ccCcEEEec-----cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320 137 IGIRPNTSLFEG--QLTL-EKGGIKVTG-----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208 (358)
Q Consensus 137 ~G~~p~~~l~~~--~~~~-~~g~i~vd~-----~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 208 (358)
+|++|++.++.. .+.+ .+|.|.+|+ +++||.|+|||+|||+..+ .++..|+.+|+.||.+|.
T Consensus 682 iG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 682 LGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIA 751 (1006)
T ss_pred CCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHH
Confidence 999999887653 3555 568899996 7899999999999998654 346789999999999975
No 67
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.1e-19 Score=166.66 Aligned_cols=163 Identities=29% Similarity=0.357 Sum_probs=130.4
Q ss_pred CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhC-
Q 018320 18 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK- 96 (358)
Q Consensus 18 ~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~- 96 (358)
.+|+++-+-+. .+ ++|+++|||||.+++|.|..|.+.+.+||+++|++.+.+ . +.+.+.++++
T Consensus 129 ~gv~yc~~cdg--~~-------~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra---~----~~~~~~l~~~~ 192 (305)
T COG0492 129 KGVSYCATCDG--FF-------KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA---E----EILVERLKKNV 192 (305)
T ss_pred CceEEeeecCc--cc-------cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc---C----HHHHHHHHhcC
Confidence 57877766332 12 578999999999999999999999999999999987654 2 3344555555
Q ss_pred CCEEEcCCeeeEEEEcCCCcEEEEEcCCC----cEEecCeEEEeeCCCCChhhhhccccc-ccCcEEEeccccCCCCcEE
Q 018320 97 GVKFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVY 171 (358)
Q Consensus 97 gV~v~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~i~vd~~~~t~~~~Vy 171 (358)
+|++++++.+.++..+ + +..+++.+. +.+++|.+++++|..|++++++....+ ++|+|.+|+.|+||+|+||
T Consensus 193 ~i~~~~~~~i~ei~G~--~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGif 269 (305)
T COG0492 193 KIEVLTNTVVKEILGD--D-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIF 269 (305)
T ss_pred CeEEEeCCceeEEecC--c-cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEE
Confidence 8999999999999853 3 556666653 368999999999999999999876444 8899999999999999999
Q ss_pred EEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320 172 AVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208 (358)
Q Consensus 172 AiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 208 (358)
|+|||+..... ++..|..+|..||.++.
T Consensus 270 AaGDv~~~~~r---------qi~ta~~~G~~Aa~~a~ 297 (305)
T COG0492 270 AAGDVADKNGR---------QIATAAGDGAIAALSAE 297 (305)
T ss_pred EeEeeccCccc---------EEeehhhhHHHHHHHHH
Confidence 99999987642 45567778888887654
No 68
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.81 E-value=1.8e-18 Score=179.40 Aligned_cols=189 Identities=24% Similarity=0.376 Sum_probs=137.1
Q ss_pred CCCccCCCCCCCCCCeEEecCH-----HHHHHHHHHH----hcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320 5 LKLEEFGLSGSDAENVCYLRDL-----ADANRLVNVM----KSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA 74 (358)
Q Consensus 5 ~~P~~~~ipG~~~~~v~~l~~~-----~da~~i~~~l----~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~ 74 (358)
..+..+++||.+.++|+..... .+...+.... ....+++|+|||||++|+++|..+.++|. +||++.+.+
T Consensus 423 ~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 423 YRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 3455678999999999853211 1111111000 01257899999999999999999999997 699999876
Q ss_pred cc-cCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---------CC-----------cEEecCeE
Q 018320 75 HC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMV 133 (358)
Q Consensus 75 ~~-l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~v 133 (358)
.. ++. .+.+ .+.+++.||++++++.++++..+++|++..+++. +| .++++|.|
T Consensus 503 ~~~~~~-~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~V 576 (654)
T PRK12769 503 EANMPG-SKKE-----VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAV 576 (654)
T ss_pred CCCCCC-CHHH-----HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEE
Confidence 53 442 2222 3457788999999999999976556766555531 22 25999999
Q ss_pred EEeeCCCCCh-hhhhcc-ccc-ccCcEEEec----cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHH
Q 018320 134 VVGIGIRPNT-SLFEGQ-LTL-EKGGIKVTG----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA 206 (358)
Q Consensus 134 i~a~G~~p~~-~l~~~~-~~~-~~g~i~vd~----~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~ 206 (358)
|+|+|+.|++ .+++.. +.+ .+|.|.+|+ +++|+.|+|||+||++..+. ++..|+.+|+.||.+
T Consensus 577 i~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~----------~vv~Ai~~Gr~AA~~ 646 (654)
T PRK12769 577 IMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD----------LVVTAMAEGRHAAQG 646 (654)
T ss_pred EECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCc----------HHHHHHHHHHHHHHH
Confidence 9999999986 444443 555 568899985 58999999999999987643 467899999999999
Q ss_pred HcC
Q 018320 207 IME 209 (358)
Q Consensus 207 i~g 209 (358)
|..
T Consensus 647 I~~ 649 (654)
T PRK12769 647 IID 649 (654)
T ss_pred HHH
Confidence 864
No 69
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.81 E-value=1.1e-18 Score=174.73 Aligned_cols=194 Identities=22% Similarity=0.317 Sum_probs=134.4
Q ss_pred CCccCCCCCCCCCCeEEecC-HHHHHHHHH--HH-----hcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcc
Q 018320 6 KLEEFGLSGSDAENVCYLRD-LADANRLVN--VM-----KSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC 76 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~-~~da~~i~~--~l-----~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~ 76 (358)
.|..++|||.+.++|++... +.+...+.. .. ....+|+|+|||||++|+|+|..+.++|. +|+++++.+..
T Consensus 240 ~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~ 319 (485)
T TIGR01317 240 KPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKP 319 (485)
T ss_pred CCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 47778899999999997543 333322211 00 01257999999999999999888888775 79999988765
Q ss_pred cCccC-C------H---HHHHHHHHHHHhCCCEE-EcCCeeeEEEEcCCCcEEEEEc--------CCCc-----------
Q 018320 77 MARLF-T------P---KIASYYEEYYKSKGVKF-VKGTVLSSFDVDSNGKVVAVNL--------RDGN----------- 126 (358)
Q Consensus 77 l~~~~-~------~---~~~~~~~~~l~~~gV~v-~~~~~v~~i~~~~~g~v~~v~~--------~~g~----------- 126 (358)
+.... + + ++....++..+..||++ ++++.+.+|..++++++..+++ .+|+
T Consensus 320 ~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~ 399 (485)
T TIGR01317 320 PEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEE 399 (485)
T ss_pred hhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceE
Confidence 43211 1 0 12222334444457654 5677888887644466655542 1332
Q ss_pred EEecCeEEEeeCCC-CChhhhhcc-ccc-ccCcEEE-eccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHH
Q 018320 127 RLPTDMVVVGIGIR-PNTSLFEGQ-LTL-EKGGIKV-TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH 202 (358)
Q Consensus 127 ~i~~D~vi~a~G~~-p~~~l~~~~-~~~-~~g~i~v-d~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~ 202 (358)
++++|.||+++|.. |++.+++.. +.. .+|.+.+ |++++|+.|+|||+|||+..+ ..+..|+.+|+.
T Consensus 400 ~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~ 469 (485)
T TIGR01317 400 VFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRK 469 (485)
T ss_pred EEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCc----------HHHHHHHHHHHH
Confidence 69999999999986 888877654 554 5677754 578999999999999998653 246679999999
Q ss_pred HHHHHcC
Q 018320 203 AVAAIME 209 (358)
Q Consensus 203 aa~~i~g 209 (358)
||.+|..
T Consensus 470 AA~~i~~ 476 (485)
T TIGR01317 470 AAAAVDR 476 (485)
T ss_pred HHHHHHH
Confidence 9999854
No 70
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.79 E-value=7.1e-18 Score=178.56 Aligned_cols=184 Identities=25% Similarity=0.369 Sum_probs=130.6
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHH-hcCCCCcEEEEcCcHHHHHHHHHHHhC-CC-cEEEEeeCC-cccCccC
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVM-KSCSGGNAVVIGGGYIGMECAASLVIN-KI-NVTMVFPEA-HCMARLF 81 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l-~~~~~~~vvVIGgG~~gle~A~~L~~~-g~-~Vtlv~~~~-~~l~~~~ 81 (358)
.|+.+++||.+ ++++ ..++....+.... ....+++|+|||||++|+|+|..+.+. |. +||++.+.. ..++. .
T Consensus 633 ~~~~l~I~G~~-~~v~--~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~ 708 (1012)
T TIGR03315 633 KHGPLRLEGGG-ERVL--KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-S 708 (1012)
T ss_pred CCCCCCcCCCC-ccee--eHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-C
Confidence 34556778764 4554 2333333332210 012589999999999999999999886 75 799999876 34553 3
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEE--------------EcCCC--cEEecCeEEEeeCCCCChhh
Q 018320 82 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV--------------NLRDG--NRLPTDMVVVGIGIRPNTSL 145 (358)
Q Consensus 82 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v--------------~~~~g--~~i~~D~vi~a~G~~p~~~l 145 (358)
++++ .+. .+.||++++...+.+++ ++.+... ...+| .++++|.||+|+|.+|++++
T Consensus 709 ~eEl----~~a-leeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~l 780 (1012)
T TIGR03315 709 REEL----EEA-LEDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL 780 (1012)
T ss_pred HHHH----HHH-HHcCCEEEeCCceEEEE---CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHH
Confidence 4433 232 35799999998888886 1222111 11123 36899999999999999998
Q ss_pred hhcc-ccc-ccCcEEEecc-ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320 146 FEGQ-LTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 211 (358)
Q Consensus 146 ~~~~-~~~-~~g~i~vd~~-~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 211 (358)
++.. +.+ .+|.|.||++ ++|+.|+|||+|||+..+ ..+..|+.||+.||.+|++..
T Consensus 781 le~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP----------~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 781 LQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP----------ATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred HHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCc----------cHHHHHHHHHHHHHHHHhccc
Confidence 8654 555 5688999986 899999999999998654 346789999999999999754
No 71
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.78 E-value=6.3e-18 Score=174.69 Aligned_cols=188 Identities=22% Similarity=0.342 Sum_probs=135.1
Q ss_pred CCccCCCCCCCCCCeEEecCH-----HHHHHHHHH----HhcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCc
Q 018320 6 KLEEFGLSGSDAENVCYLRDL-----ADANRLVNV----MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH 75 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~-----~da~~i~~~----l~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~ 75 (358)
.|..+++||.+.+++++.-.+ .+...+... +....+|+++|||+|.+|+++|..+.++|. +||++.+.+.
T Consensus 407 ~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 407 GMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 455678999998998862111 111111100 111257899999999999999999999995 7999998765
Q ss_pred c-cCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc---C------CC-----------cEEecCeEE
Q 018320 76 C-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---R------DG-----------NRLPTDMVV 134 (358)
Q Consensus 76 ~-l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~---~------~g-----------~~i~~D~vi 134 (358)
. ++. .+.++ ..+++.||++++++.+++|..+++|++..+++ . +| .++++|.||
T Consensus 487 ~~~~~-~~~e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi 560 (639)
T PRK12809 487 VSMPG-SRKEV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLI 560 (639)
T ss_pred ccCCC-CHHHH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEE
Confidence 4 443 22222 23567899999999999998656676655432 1 12 368999999
Q ss_pred EeeCCCCCh-hhhhcc-ccc-ccCcEEEec----cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHH
Q 018320 135 VGIGIRPNT-SLFEGQ-LTL-EKGGIKVTG----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI 207 (358)
Q Consensus 135 ~a~G~~p~~-~l~~~~-~~~-~~g~i~vd~----~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i 207 (358)
+|+|+.|+. .+++.. +.+ .+|.|.+|+ +++|+.|+|||+|||+..+. ++..|+.+|+.||.+|
T Consensus 561 ~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~----------~vv~Ai~~Gr~AA~~i 630 (639)
T PRK12809 561 MAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGAD----------LVVTAMAAGRQAARDM 630 (639)
T ss_pred ECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCch----------HHHHHHHHHHHHHHHH
Confidence 999999975 444433 555 568899985 48999999999999987643 4678999999999998
Q ss_pred cC
Q 018320 208 ME 209 (358)
Q Consensus 208 ~g 209 (358)
..
T Consensus 631 ~~ 632 (639)
T PRK12809 631 LT 632 (639)
T ss_pred HH
Confidence 64
No 72
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.71 E-value=5.7e-16 Score=158.19 Aligned_cols=185 Identities=25% Similarity=0.320 Sum_probs=131.6
Q ss_pred CccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcc-cCccCCHH
Q 018320 7 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC-MARLFTPK 84 (358)
Q Consensus 7 P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~-l~~~~~~~ 84 (358)
+..+.++|.+..+++..-.+.. ..........+++++|||+|..|++++..+.++| .+|+++.+.+.. ++. ...+
T Consensus 235 ~~~~~i~g~~~~gv~~~~~~l~--~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~-~~~~ 311 (564)
T PRK12771 235 GKRLPIPGEDAAGVLDAVDFLR--AVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA-HDEE 311 (564)
T ss_pred CCcCCCCCCccCCcEEHHHHHH--HhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC-CHHH
Confidence 4456788887777764322111 1100001224789999999999999999999998 679999887642 332 2333
Q ss_pred HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcE----EEEEc----CCC---------cEEecCeEEEeeCCCCChhhhh
Q 018320 85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV----VAVNL----RDG---------NRLPTDMVVVGIGIRPNTSLFE 147 (358)
Q Consensus 85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v----~~v~~----~~g---------~~i~~D~vi~a~G~~p~~~l~~ 147 (358)
+ +...+.||++++++.+.++..++++.+ ..++. .+| .++++|.||+|+|..|++.++.
T Consensus 312 ~-----~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~ 386 (564)
T PRK12771 312 I-----EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLE 386 (564)
T ss_pred H-----HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhh
Confidence 2 234567999999999999976444432 12221 122 3799999999999999998876
Q ss_pred c--ccccccCcEEEec-cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 148 G--QLTLEKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 148 ~--~~~~~~g~i~vd~-~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
. .+..++|.|.||+ +++|+.|+|||+|||+..+ .++..|+.||+.||.+|..
T Consensus 387 ~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~----------~~v~~Av~~G~~aA~~i~~ 441 (564)
T PRK12771 387 SVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP----------RTVTTAIGHGKKAARNIDA 441 (564)
T ss_pred hccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence 4 2444678999998 7899999999999998754 3577899999999999853
No 73
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.71 E-value=4.6e-16 Score=167.70 Aligned_cols=173 Identities=18% Similarity=0.174 Sum_probs=128.7
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcccCccCCHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARLFTPK 84 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~l~~~~~~~ 84 (358)
+|+.+++||.+.++|++.....+..+ .....++++++|||+|++|+|+|..|++.|. .|+++++.+.+
T Consensus 285 ~~r~~pipG~~~pgV~~~~~~~~~l~---~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-------- 353 (985)
T TIGR01372 285 HERPLVFANNDRPGVMLAGAARTYLN---RYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-------- 353 (985)
T ss_pred CCcCCCCCCCCCCCcEEchHHHHHHH---hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------
Confidence 45667899999999997655443322 1111257999999999999999999999996 57888876543
Q ss_pred HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC----CCcEEecCeEEEeeCCCCChhhhhcc-cccccCcEEE
Q 018320 85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR----DGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKV 159 (358)
Q Consensus 85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~----~g~~i~~D~vi~a~G~~p~~~l~~~~-~~~~~g~i~v 159 (358)
...+.+.|++.||++++++.+++++. ++.+..+++. ++++++||.|++++|.+||++++... ... ..
T Consensus 354 -~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~-----~~ 425 (985)
T TIGR01372 354 -SPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKL-----AW 425 (985)
T ss_pred -hHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCe-----ee
Confidence 22355678899999999999999974 3444445543 45789999999999999999988643 221 11
Q ss_pred ecc-----ccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320 160 TGR-----LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208 (358)
Q Consensus 160 d~~-----~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 208 (358)
|+. -.|+.|+||++|||+... .+..|..+|+.||..++
T Consensus 426 ~~~~~~~~~~t~v~gVyaaGD~~g~~-----------~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 426 DAAIAAFLPGDAVQGCILAGAANGLF-----------GLAAALADGAAAGAAAA 468 (985)
T ss_pred ccccCceecCCCCCCeEEeeccCCcc-----------CHHHHHHHHHHHHHHHH
Confidence 211 137899999999998653 35679999999998875
No 74
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.70 E-value=4.5e-16 Score=154.74 Aligned_cols=193 Identities=24% Similarity=0.347 Sum_probs=131.6
Q ss_pred CccCCCCCCCCCCeEEecCHH-------HHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhC----------------
Q 018320 7 LEEFGLSGSDAENVCYLRDLA-------DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---------------- 63 (358)
Q Consensus 7 P~~~~ipG~~~~~v~~l~~~~-------da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~---------------- 63 (358)
++.++|||.+.++||+.+++- ++..+...+ ..+++|+|||+|++|+|+|..|.+.
T Consensus 127 ~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~--~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~ 204 (491)
T PLN02852 127 DRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDL--KSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEA 204 (491)
T ss_pred CCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcc--cCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHH
Confidence 456789999999999765542 221121111 1478999999999999999999875
Q ss_pred ----CC-cEEEEeeCCcccCccCCHHH-------------------------------------HHHHHHHHHh------
Q 018320 64 ----KI-NVTMVFPEAHCMARLFTPKI-------------------------------------ASYYEEYYKS------ 95 (358)
Q Consensus 64 ----g~-~Vtlv~~~~~~l~~~~~~~~-------------------------------------~~~~~~~l~~------ 95 (358)
|. +|+++.|+...-..+-..++ .+.+.+...+
T Consensus 205 l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~ 284 (491)
T PLN02852 205 LRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPS 284 (491)
T ss_pred HhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccC
Confidence 65 59999887532111111111 1122222222
Q ss_pred ---CCCEEEcCCeeeEEEEc--CCCcEEEEEcC-----------------CC--cEEecCeEEEeeCCC--CChhh-hhc
Q 018320 96 ---KGVKFVKGTVLSSFDVD--SNGKVVAVNLR-----------------DG--NRLPTDMVVVGIGIR--PNTSL-FEG 148 (358)
Q Consensus 96 ---~gV~v~~~~~v~~i~~~--~~g~v~~v~~~-----------------~g--~~i~~D~vi~a~G~~--p~~~l-~~~ 148 (358)
++|.|++....++|..+ +++++..+++. +| ++++||.||.++|++ |.+.+ +..
T Consensus 285 ~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~ 364 (491)
T PLN02852 285 GGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDH 364 (491)
T ss_pred CCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCcccc
Confidence 57999999999999742 23566666552 12 258999999999998 66553 322
Q ss_pred --ccc-cccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320 149 --QLT-LEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 210 (358)
Q Consensus 149 --~~~-~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~ 210 (358)
.+. ..+|.|.+|+.++|+.|+|||+|||...+. ..+..++.+|+.++.+|+..
T Consensus 365 ~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~---------gvI~t~~~dA~~ta~~i~~d 420 (491)
T PLN02852 365 KRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPT---------GIIGTNLTCAEETVASIAED 420 (491)
T ss_pred CcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCC---------CeeeecHhhHHHHHHHHHHH
Confidence 233 367999999888999999999999998664 34667788888888888753
No 75
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.8e-16 Score=143.19 Aligned_cols=158 Identities=28% Similarity=0.448 Sum_probs=120.6
Q ss_pred cCCCCCCC---CCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 9 EFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 9 ~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
.+.+||.+ .++|-++-..+.- . .++|+|+|||||.+|+|.|..|+-.-..||+++-.+.+-.
T Consensus 327 n~nvPGE~e~rnKGVayCPHCDGP-----L---F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA------- 391 (520)
T COG3634 327 NMNVPGEDEYRNKGVAYCPHCDGP-----L---FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA------- 391 (520)
T ss_pred cCCCCchHHHhhCCeeeCCCCCCc-----c---cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh-------
Confidence 45677753 3555544332211 0 1689999999999999999999988889999986654322
Q ss_pred HHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCC---C--cEEecCeEEEeeCCCCChhhhhccccc-ccCcEE
Q 018320 86 ASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIK 158 (358)
Q Consensus 86 ~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~i~ 158 (358)
-+.+++.|++ .+|+++++...++|..++ .++..+...| | ..++-+-|++-+|..||++|++..+++ ..|.|.
T Consensus 392 D~VLq~kl~sl~Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIi 470 (520)
T COG3634 392 DAVLQDKLRSLPNVTIITNAQTTEVKGDG-DKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEII 470 (520)
T ss_pred HHHHHHHHhcCCCcEEEecceeeEEecCC-ceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEE
Confidence 2445666665 589999999999998532 3444454433 3 347788999999999999999998887 789999
Q ss_pred EeccccCCCCcEEEEccccccccc
Q 018320 159 VTGRLQSSNSSVYAVGDVAAFPLK 182 (358)
Q Consensus 159 vd~~~~t~~~~VyAiGD~~~~~~~ 182 (358)
||.+..||+|+|||+|||+..+..
T Consensus 471 vD~~g~TsvpGvFAAGD~T~~~yK 494 (520)
T COG3634 471 VDARGETNVPGVFAAGDCTTVPYK 494 (520)
T ss_pred EecCCCcCCCceeecCcccCCccc
Confidence 999999999999999999987653
No 76
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.63 E-value=3.4e-15 Score=112.65 Aligned_cols=80 Identities=36% Similarity=0.592 Sum_probs=74.7
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL 122 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~ 122 (358)
|++|||||++|+|+|..|+++|.+||++++.+.+++ .+++++.+.+.+.|+++||++++++.+++++.++++ +. |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 689999999999999999999999999999999995 499999999999999999999999999999987777 65 888
Q ss_pred CCC
Q 018320 123 RDG 125 (358)
Q Consensus 123 ~~g 125 (358)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 876
No 77
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.58 E-value=4.5e-15 Score=131.01 Aligned_cols=137 Identities=28% Similarity=0.399 Sum_probs=97.9
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC--ccCCH-----------HHH--H--HHHHHHHhCCCEEEcCCe
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--RLFTP-----------KIA--S--YYEEYYKSKGVKFVKGTV 105 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~--~~~~~-----------~~~--~--~~~~~l~~~gV~v~~~~~ 105 (358)
+|+|||||+.|+.+|..|++.+.+|+++++.+.... ..+.. ... + .+.+.+...+++++.+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999987653210 00000 011 1 334445678999999999
Q ss_pred eeEEEEcCCCc-------EEEEEcCCCcEEecCeEEEeeCCCCChhh-------------------h-------------
Q 018320 106 LSSFDVDSNGK-------VVAVNLRDGNRLPTDMVVVGIGIRPNTSL-------------------F------------- 146 (358)
Q Consensus 106 v~~i~~~~~g~-------v~~v~~~~g~~i~~D~vi~a~G~~p~~~l-------------------~------------- 146 (358)
+.+++. ..+. +......++.++++|.+|+|+|.+|+... .
T Consensus 81 v~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 159 (201)
T PF07992_consen 81 VVSIDP-ESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG 159 (201)
T ss_dssp EEEEEE-STTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES
T ss_pred cccccc-cccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccc
Confidence 999986 3332 22234556778999999999998755220 0
Q ss_pred -----hc-cccc-ccCcEEEeccccCCCCcEEEEccccccc
Q 018320 147 -----EG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFP 180 (358)
Q Consensus 147 -----~~-~~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~ 180 (358)
+. .+++ ++|+|.||+++||+.|+|||+|||+..+
T Consensus 160 ~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred ccccccccccccccccccccccccccccccccccccccccC
Confidence 00 1334 5788999999999999999999999865
No 78
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2e-14 Score=125.31 Aligned_cols=133 Identities=27% Similarity=0.318 Sum_probs=106.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHH-HHHHhCCCEEEcCCeeeEEEEcCCCc--
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE-EYYKSKGVKFVKGTVLSSFDVDSNGK-- 116 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~-~~l~~~gV~v~~~~~v~~i~~~~~g~-- 116 (358)
++|-.+|||||.+++|-|..|.+.+.+|.+++|.+++-. +..++ +.++..+|++++++.+.+...+ .+.
T Consensus 156 rnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA-------s~~Mq~ra~~npnI~v~~nt~~~ea~gd-~~~l~ 227 (322)
T KOG0404|consen 156 RNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA-------SKIMQQRAEKNPNIEVLYNTVAVEALGD-GKLLN 227 (322)
T ss_pred cCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH-------HHHHHHHHhcCCCeEEEechhhhhhccC-ccccc
Confidence 578899999999999999999999999999999987543 22333 3445678999999988877643 122
Q ss_pred ---EEEEEcCCCcEEecCeEEEeeCCCCChhhhhccccc-ccCcEEEe-ccccCCCCcEEEEccccccc
Q 018320 117 ---VVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVT-GRLQSSNSSVYAVGDVAAFP 180 (358)
Q Consensus 117 ---v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~-~~g~i~vd-~~~~t~~~~VyAiGD~~~~~ 180 (358)
+..+...+-+.++.+-++.++|..|++.+++..+++ ++|+|++- ..-.||+|++||+||+....
T Consensus 228 ~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k 296 (322)
T KOG0404|consen 228 GLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK 296 (322)
T ss_pred ceEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchHH
Confidence 223333444679999999999999999999998888 78888887 56778999999999998753
No 79
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.37 E-value=2.2e-12 Score=127.30 Aligned_cols=195 Identities=26% Similarity=0.294 Sum_probs=136.2
Q ss_pred CCCCCccCCCCCCCCCCeEEecCHHHHHHHHHHH-----hc--CCCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320 3 MALKLEEFGLSGSDAENVCYLRDLADANRLVNVM-----KS--CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA 74 (358)
Q Consensus 3 ~~~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l-----~~--~~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~ 74 (358)
...+|+.+++||.++++|+.--++--........ .. .++|+++|||+|.++++++....+.|+ +|+.+.+..
T Consensus 217 G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~ 296 (457)
T COG0493 217 GAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYRED 296 (457)
T ss_pred cccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecccc
Confidence 3568999999999999998422211111111111 00 034999999999999999999999998 688775322
Q ss_pred cc--cCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-------------------C--cEEecC
Q 018320 75 HC--MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-------------------G--NRLPTD 131 (358)
Q Consensus 75 ~~--l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-------------------g--~~i~~D 131 (358)
.- ... .+........+....+|+.+.+.....++..+++|++..+.+.. | ..+++|
T Consensus 297 ~~~~~~~-~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD 375 (457)
T COG0493 297 RDDETNE-WPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAAD 375 (457)
T ss_pred ccccCCc-ccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHH
Confidence 11 110 11122344456667789999999999999887888776553321 2 257899
Q ss_pred eEEEeeCCCCChhhh---hccccc-ccCcEEEeccc-cCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHH
Q 018320 132 MVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRL-QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA 206 (358)
Q Consensus 132 ~vi~a~G~~p~~~l~---~~~~~~-~~g~i~vd~~~-~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~ 206 (358)
+|+.++|+.++.... ...+.. ..|.|.+|+.+ +|+.|++||.||+.... .++..|+.+|+.+|+.
T Consensus 376 ~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~ 445 (457)
T COG0493 376 TVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA----------ALVVWAIAEGREAAKA 445 (457)
T ss_pred HHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccch----------hhhhhHHhhchHHHHh
Confidence 999999988875432 113444 67999999998 99999999999999864 3566789999999987
Q ss_pred Hc
Q 018320 207 IM 208 (358)
Q Consensus 207 i~ 208 (358)
|.
T Consensus 446 i~ 447 (457)
T COG0493 446 ID 447 (457)
T ss_pred hh
Confidence 64
No 80
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.32 E-value=8.3e-12 Score=111.45 Aligned_cols=169 Identities=26% Similarity=0.384 Sum_probs=119.6
Q ss_pred CCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHH
Q 018320 6 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 85 (358)
Q Consensus 6 ~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 85 (358)
+|+. ..+|.+ +.|..+|+.+.+..++..+. +.|.|.|+|.|-+++|++..+. +.+|++....+.+...+|+|.+
T Consensus 103 kPkl-q~E~~n-~~Iv~irDtDsaQllq~kl~--kaK~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGa 176 (334)
T KOG2755|consen 103 KPKL-QVEGIN-PKIVGIRDTDSAQLLQCKLV--KAKIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGA 176 (334)
T ss_pred Ccce-eecCCC-ceEEEEecCcHHHHHHHHHh--hcceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccH
Confidence 4553 345533 67888999999999998887 6899999999999999998884 6799999999999999999998
Q ss_pred HHHHHHHHHhC------------CCEEEcCC-----------------eeeEE-------------------EEcCCCcE
Q 018320 86 ASYYEEYYKSK------------GVKFVKGT-----------------VLSSF-------------------DVDSNGKV 117 (358)
Q Consensus 86 ~~~~~~~l~~~------------gV~v~~~~-----------------~v~~i-------------------~~~~~g~v 117 (358)
.+.+...|+.. .++..+++ ....+ .+.+.+.+
T Consensus 177 aef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv 256 (334)
T KOG2755|consen 177 AEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSV 256 (334)
T ss_pred HHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhccc
Confidence 88887666211 11111110 00000 00001111
Q ss_pred EEEEcCCC--cEEecCeEEEeeCCCCChhhhhcc-ccc-ccCcEEEeccccCCCCcEEEEccccccc
Q 018320 118 VAVNLRDG--NRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFP 180 (358)
Q Consensus 118 ~~v~~~~g--~~i~~D~vi~a~G~~p~~~l~~~~-~~~-~~g~i~vd~~~~t~~~~VyAiGD~~~~~ 180 (358)
......++ ..+.||.++.++|+.||.++.-.. +.. ++++++||+.|+|+.|++||+||++...
T Consensus 257 ~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~tslpdvFa~gDvctt~ 323 (334)
T KOG2755|consen 257 HYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCTTT 323 (334)
T ss_pred ccccccccccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhhccccccceeeecceeccC
Confidence 11111111 357799999999999999965433 555 8999999999999999999999998743
No 81
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.31 E-value=3.9e-11 Score=117.74 Aligned_cols=159 Identities=18% Similarity=0.162 Sum_probs=116.6
Q ss_pred EEEEcCcHHHHHHH-HHHH----hCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEE
Q 018320 44 AVVIGGGYIGMECA-ASLV----INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 118 (358)
Q Consensus 44 vvVIGgG~~gle~A-~~L~----~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~ 118 (358)
=+|++.+.+|+|.+ ..++ +.|.+|++++..+..++. .++.+.+.+.+++.|++++++++|++++.+ ++.+.
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~ 293 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVT 293 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEE
Confidence 36788899999999 6665 469999999999888875 378889999999999999999999999863 45555
Q ss_pred EEEcCCC--cEEecCeEEEeeCCCCChhhhh------cc-----c------------------ccccCcEEEeccccC--
Q 018320 119 AVNLRDG--NRLPTDMVVVGIGIRPNTSLFE------GQ-----L------------------TLEKGGIKVTGRLQS-- 165 (358)
Q Consensus 119 ~v~~~~g--~~i~~D~vi~a~G~~p~~~l~~------~~-----~------------------~~~~g~i~vd~~~~t-- 165 (358)
.+...++ ..+++|.+|+|+|+.+...+.. +. + .+..-+|.+|++++.
T Consensus 294 ~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~ 373 (422)
T PRK05329 294 AVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLD 373 (422)
T ss_pred EEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCccc
Confidence 5554455 3589999999999876654410 00 0 001234667766663
Q ss_pred -----CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320 166 -----SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 210 (358)
Q Consensus 166 -----~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~ 210 (358)
..+|+||+|++...+++.... .....|+..|..|+++|+..
T Consensus 374 ~~g~~~~~nl~a~G~vl~g~d~~~~~----~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 374 SQGGPVIENLYAAGAVLGGYDPIREG----CGSGVALATALHAAEQIAEE 419 (422)
T ss_pred CCCCeeccceEEeeehhcCCchHHhC----CCchhHHHHHHHHHHHHHHh
Confidence 579999999999988764211 12346788888888888643
No 82
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.22 E-value=1.2e-10 Score=116.08 Aligned_cols=171 Identities=11% Similarity=0.077 Sum_probs=113.1
Q ss_pred CCCCCCccCCCCCCC-CCCe-EEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320 2 NMALKLEEFGLSGSD-AENV-CYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 79 (358)
Q Consensus 2 ~~~~~P~~~~ipG~~-~~~v-~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~ 79 (358)
|.-.+|+.++|||.+ .++. .+..++.+... .++|+|+|||+|.+|+|+|..|++.+.+|+++.|...+...
T Consensus 170 G~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~-------~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~ 242 (461)
T PLN02172 170 GHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDP-------FKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTY 242 (461)
T ss_pred cCCCCCcCCCCCCcccCCceEEEecccCCccc-------cCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccccc
Confidence 444567777788864 2331 22222222211 26899999999999999999999999999999987643110
Q ss_pred cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcccccccCcEEE
Q 018320 80 LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 159 (358)
Q Consensus 80 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i~v 159 (358)
..+......+..+..|..+. +++ .|.+.||+.+++|.||+|||++|+.+++... +.|.+
T Consensus 243 -----------~~~~~~~~~v~~~~~I~~~~--~~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~-----~~i~v 301 (461)
T PLN02172 243 -----------EKLPVPQNNLWMHSEIDTAH--EDG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETN-----GYMRI 301 (461)
T ss_pred -----------ccCcCCCCceEECCccccee--cCC---eEEECCCCCccCCEEEECCcCCccccccCcc-----cceee
Confidence 01111223445566676664 334 3778999999999999999999999987642 23333
Q ss_pred eccc------c---CC-CCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320 160 TGRL------Q---SS-NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 211 (358)
Q Consensus 160 d~~~------~---t~-~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 211 (358)
|+.. . .. .|+++.+|=.... .....+..|++.+|..+.|..
T Consensus 302 ~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 302 DENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred CCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCC
Confidence 3211 1 12 4899999965322 223457789999999988764
No 83
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.14 E-value=1.1e-09 Score=102.37 Aligned_cols=99 Identities=14% Similarity=0.244 Sum_probs=80.0
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc---c--------cCc----cCCHHHHHHHHHHHHhCCCEEEcCCeee
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH---C--------MAR----LFTPKIASYYEEYYKSKGVKFVKGTVLS 107 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~---~--------l~~----~~~~~~~~~~~~~l~~~gV~v~~~~~v~ 107 (358)
+++|||||+.|+++|..|++.|.+|+++++.+. + .|. ..+.++...+.+.+++.|+++++ ++++
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 699999999999999999999999999998651 1 121 12367888888889999999998 8899
Q ss_pred EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 108 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 108 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
+++.+++. ..+.+.++.++.+|.+|+|+|.+|+..
T Consensus 81 ~v~~~~~~--~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 81 KVDLSDRP--FKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEecCCe--eEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 99863322 356677788999999999999988754
No 84
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.08 E-value=1.7e-10 Score=119.53 Aligned_cols=192 Identities=19% Similarity=0.288 Sum_probs=113.4
Q ss_pred CCCCCccCCCCCCCCCCeEEecCHHHHHHHHHHHh--------cCCCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeC
Q 018320 3 MALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK--------SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPE 73 (358)
Q Consensus 3 ~~~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~--------~~~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~ 73 (358)
.+..|+++++||.|+++|+.--.+-+.. -+..+. +.++|+|+|||||..|-+|-..-.++|++ |.-++--
T Consensus 1879 gst~prdlpv~grd~kgv~fame~l~~n-tk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ell 1957 (2142)
T KOG0399|consen 1879 GSTTPRDLPVPGRDLKGVHFAMEFLEKN-TKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELL 1957 (2142)
T ss_pred CCCCCcCCCCCCccccccHHHHHHHHHh-HHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeec
Confidence 3578999999999999997432221111 111221 12689999999999999999999999985 4334433
Q ss_pred Ccc---------c---CccCCHHHHHH-HHHHHHhCCCEEE-----------------cCCeeeEE--EEcCCCcEEEEE
Q 018320 74 AHC---------M---ARLFTPKIASY-YEEYYKSKGVKFV-----------------KGTVLSSF--DVDSNGKVVAVN 121 (358)
Q Consensus 74 ~~~---------l---~~~~~~~~~~~-~~~~l~~~gV~v~-----------------~~~~v~~i--~~~~~g~v~~v~ 121 (358)
|++ + |+.|--+.... ..+. .|-+.+ ++-+..++ ++++.|+..-++
T Consensus 1958 p~pp~~ra~~npwpqwprvfrvdygh~e~~~~---~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~e 2034 (2142)
T KOG0399|consen 1958 PQPPPERAPDNPWPQWPRVFRVDYGHAEAKEH---YGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKE 2034 (2142)
T ss_pred CCCCcccCCCCCCccCceEEEeecchHHHHHH---hCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEE
Confidence 322 1 11111111111 1111 111111 11122222 233344433333
Q ss_pred cCCC-cEEecCeEEEeeCCC-CChhhhhcc-ccc-ccCcEEE-eccccCCCCcEEEEcccccccccccCcccccccHHHH
Q 018320 122 LRDG-NRLPTDMVVVGIGIR-PNTSLFEGQ-LTL-EKGGIKV-TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA 196 (358)
Q Consensus 122 ~~~g-~~i~~D~vi~a~G~~-p~~~l~~~~-~~~-~~g~i~v-d~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A 196 (358)
..+. +.++||+||+|.|+. |.....+.. ++. .++.|.. ++.+.|++++|||+|||-..... +-.|
T Consensus 2035 i~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqsl----------vvwa 2104 (2142)
T KOG0399|consen 2035 INNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSL----------VVWA 2104 (2142)
T ss_pred cCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceE----------EEEE
Confidence 3332 468999999999976 444444433 444 4555655 46688999999999999887643 3346
Q ss_pred HHHHHHHHHHHc
Q 018320 197 RKSAKHAVAAIM 208 (358)
Q Consensus 197 ~~~g~~aa~~i~ 208 (358)
+++||.+|+.+-
T Consensus 2105 i~egrq~a~~vd 2116 (2142)
T KOG0399|consen 2105 IQEGRQAARQVD 2116 (2142)
T ss_pred ehhhhHHHHHHH
Confidence 788888887753
No 85
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.04 E-value=5.7e-09 Score=109.98 Aligned_cols=170 Identities=20% Similarity=0.175 Sum_probs=106.0
Q ss_pred CCCccCCCCCCCCCCeEEecCHHHHHHHHHHH-----h-cCCCCcEEEEcCcHHHHHHHHHHHh----------------
Q 018320 5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVM-----K-SCSGGNAVVIGGGYIGMECAASLVI---------------- 62 (358)
Q Consensus 5 ~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l-----~-~~~~~~vvVIGgG~~gle~A~~L~~---------------- 62 (358)
.+|+.++|||.+.++|++..++-...+..... . ...+++|||||||++|+|+|.....
T Consensus 508 ~kpr~L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~ 587 (1028)
T PRK06567 508 GQPKVLDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEK 587 (1028)
T ss_pred CCCCCCCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhh
Confidence 46888899999988998533311111100000 0 0025899999999999999984332
Q ss_pred -----------------------------------CCCcEEEEeeCCcc-cCcc-CCHHHHHHHHHHHHhCCCEEEcCCe
Q 018320 63 -----------------------------------NKINVTMVFPEAHC-MARL-FTPKIASYYEEYYKSKGVKFVKGTV 105 (358)
Q Consensus 63 -----------------------------------~g~~Vtlv~~~~~~-l~~~-~~~~~~~~~~~~l~~~gV~v~~~~~ 105 (358)
.|. ||++.|...- +|.. ++. +.+++ ..+.||+|+....
T Consensus 588 ~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~~~---eEv~~-A~eEGV~f~~~~~ 662 (1028)
T PRK06567 588 DLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKLNH---EELIY-ALALGVDFKENMQ 662 (1028)
T ss_pred hcccccHHHHHHHHHHHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCCCCCCH---HHHHH-HHHcCcEEEecCC
Confidence 232 8888776432 2220 011 22222 3456999999999
Q ss_pred eeEEEEcCCCcEEEEEcC--------------C-C---------------cEEecCeEEEeeCCCCChhhhhcccccccC
Q 018320 106 LSSFDVDSNGKVVAVNLR--------------D-G---------------NRLPTDMVVVGIGIRPNTSLFEGQLTLEKG 155 (358)
Q Consensus 106 v~~i~~~~~g~v~~v~~~--------------~-g---------------~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g 155 (358)
..+|..+++|.+..+++. + + .+++||.||+|+|..||+.+...
T Consensus 663 P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~~------- 735 (1028)
T PRK06567 663 PLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDED------- 735 (1028)
T ss_pred cEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccccc-------
Confidence 999987666777655442 1 1 46899999999999999987421
Q ss_pred cEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320 156 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208 (358)
Q Consensus 156 ~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 208 (358)
+..+-++.+++|+- .+-.|+.+|+.++.+|.
T Consensus 736 ----~~s~~~d~~~~f~G------------------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 736 ----KYSYFGDCNPKYSG------------------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred ----ccccccCCCCcccc------------------HHHHHHHHHHhHHHHHH
Confidence 01122334444443 34568888888888873
No 86
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.98 E-value=2.8e-08 Score=91.60 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=108.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------c--------------------------C-CH
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------L--------------------------F-TP 83 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------~--------------------------~-~~ 83 (358)
..+|+|||||+.|+-+|..|++.|.+|+++++.+.+... . . ..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 468999999999999999999999999999987654210 0 0 12
Q ss_pred HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-----------CCcEEecCeEEEeeCCCCChh--hhhccc
Q 018320 84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNTS--LFEGQL 150 (358)
Q Consensus 84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~--l~~~~~ 150 (358)
++...+.+...+.|++++.++.+.++..++++++..+... +..++.++.||.|+|...... +.+...
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~ 184 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP 184 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence 3445556666778999999999999876444455554432 224799999999999654432 111100
Q ss_pred ----cc--------ccCc-EEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320 151 ----TL--------EKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 210 (358)
Q Consensus 151 ----~~--------~~g~-i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~ 210 (358)
.. +.+. ..|+.. +--.|++|++|-++... +|.++.-|.-..=...|+.||+.|+..
T Consensus 185 ~~~~~~~g~~~~~~~~~e~~v~~~t-~~~~~g~~~~gm~~~~~---~~~~rmg~~fg~m~~sg~~~a~~~~~~ 253 (257)
T PRK04176 185 ELGIEVPGEKSMWAERGEKLVVENT-GEVYPGLYVAGMAANAV---HGLPRMGPIFGGMLLSGKKVAELILEK 253 (257)
T ss_pred CcccccCCccccccCchHHHHHhcC-CeEcCCEEEeehhhhhh---cCCCccCchhHhHHHhHHHHHHHHHHH
Confidence 00 1111 111111 11379999999988753 355555555554456788888877643
No 87
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.98 E-value=6.7e-09 Score=98.77 Aligned_cols=100 Identities=19% Similarity=0.283 Sum_probs=81.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------ 79 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------ 79 (358)
..|+|||||+.|+-+|..+++.|.+|+|+++.+.+..+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 57999999999999999999999999999997654211
Q ss_pred -------------------cC-----CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEE
Q 018320 80 -------------------LF-----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 135 (358)
Q Consensus 80 -------------------~~-----~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~ 135 (358)
.| ..++.+.+.+.+++.||+++++++|.+++.++ ....+.+.+|+++.||.+|+
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEE
Confidence 11 12366777888999999999999999999744 33678888999999999999
Q ss_pred eeC--CCCCh
Q 018320 136 GIG--IRPNT 143 (358)
Q Consensus 136 a~G--~~p~~ 143 (358)
|+| .-|.+
T Consensus 162 AtGG~S~P~l 171 (408)
T COG2081 162 ATGGKSWPKL 171 (408)
T ss_pred ecCCcCCCCC
Confidence 999 44533
No 88
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.91 E-value=1.3e-07 Score=87.02 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=108.7
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------c---------------------------CCH
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------L---------------------------FTP 83 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------~---------------------------~~~ 83 (358)
.-+|+|||||++|+-+|..|++.|.+|+++|+.+.+... . ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 468999999999999999999999999999997654110 0 012
Q ss_pred HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCC-cEEEEEcC-----------CCcEEecCeEEEeeCCCCCh-hhhhcc-
Q 018320 84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLR-----------DGNRLPTDMVVVGIGIRPNT-SLFEGQ- 149 (358)
Q Consensus 84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g-~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~-~l~~~~- 149 (358)
++.+.+.+...+.|++++.++.++++..++++ ++..+... +..+++++.||.|+|..... .++...
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~ 180 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI 180 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence 34455556667889999999999998764432 56665543 23478999999999965443 333221
Q ss_pred -ccccc------CcEEEe-------ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 150 -LTLEK------GGIKVT-------GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 150 -~~~~~------g~i~vd-------~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
+.... +....+ ++-+--.|++|++|-.+... .|.++.-|.-..=...|+.||+.|+.
T Consensus 181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~---~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAV---HGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred CcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhh---cCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 11100 011111 01111479999999988743 45555555555445678888887753
No 89
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.89 E-value=3.8e-08 Score=99.75 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=81.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC--Cccc-----------CccCCHHHHHHHHHHHHhCCCEEEcCCee
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVL 106 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~--~~~l-----------~~~~~~~~~~~~~~~l~~~gV~v~~~~~v 106 (358)
...+|+|||||+.|+.+|..|++.|.+|++++.. .++. +....+++.+.+.+.+++.||+++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 4578999999999999999999999999999642 1111 11234677888888899999999999999
Q ss_pred eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320 107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 143 (358)
++++.+++. ..+.+.+|..+.+|.+|+|+|.+|..
T Consensus 291 ~~I~~~~~~--~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 291 KKIETEDGL--IVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEEecCCe--EEEEECCCCEEEeCEEEECCCCCcCC
Confidence 999763322 35667788899999999999998754
No 90
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.89 E-value=4.5e-08 Score=99.26 Aligned_cols=101 Identities=23% Similarity=0.303 Sum_probs=81.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC--Ccc-----------cCccCCHHHHHHHHHHHHhCCCEEEcCCeee
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHC-----------MARLFTPKIASYYEEYYKSKGVKFVKGTVLS 107 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~--~~~-----------l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~ 107 (358)
..+++|||||+.|+.+|..|++.|.+|++++.. .++ .+....+++.+.+.+.+++.|++++.+++++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 458999999999999999999999999999753 111 1112346788888999999999999999999
Q ss_pred EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320 108 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 108 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 143 (358)
++...++ ...+.+.+|.++.+|.||+|+|.+|..
T Consensus 291 ~I~~~~~--~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAAG--LIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecCC--eEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 9986332 245667788899999999999998754
No 91
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.85 E-value=1.2e-08 Score=103.29 Aligned_cols=184 Identities=16% Similarity=0.242 Sum_probs=93.9
Q ss_pred CCCCCccC--CCCCCCC--CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc-c
Q 018320 3 MALKLEEF--GLSGSDA--ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-M 77 (358)
Q Consensus 3 ~~~~P~~~--~ipG~~~--~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~-l 77 (358)
.-.+|+.+ .+||.+. ..+++-++..+...+ ++|+|+|||+|.+|+++|..|++...+|++..|.... +
T Consensus 148 ~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f-------~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~ 220 (531)
T PF00743_consen 148 HFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPF-------KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVL 220 (531)
T ss_dssp SSSCESB-----CTGGGHCSEEEEGGG--TGGGG-------TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC------
T ss_pred CcCCCCCChhhhhhhhcCCeeEEccccCcChhhc-------CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccc
Confidence 33445544 3788642 234554444444332 6899999999999999999999999999999886432 2
Q ss_pred CccCC----------------------HHHHHHH-HHHH--------------------------------HhCCCEEEc
Q 018320 78 ARLFT----------------------PKIASYY-EEYY--------------------------------KSKGVKFVK 102 (358)
Q Consensus 78 ~~~~~----------------------~~~~~~~-~~~l--------------------------------~~~gV~v~~ 102 (358)
++..+ ..+...+ ++.+ ....|++.
T Consensus 221 pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk- 299 (531)
T PF00743_consen 221 PRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK- 299 (531)
T ss_dssp ------------------------------------------------------------------------------E-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 22110 0011111 0111 11112222
Q ss_pred CCeeeEEEEcCCCcEEEEEcCCCcEE-ecCeEEEeeCCCCChhhhhccc-ccccCcEEEecccc---CCCCcEEEEcccc
Q 018320 103 GTVLSSFDVDSNGKVVAVNLRDGNRL-PTDMVVVGIGIRPNTSLFEGQL-TLEKGGIKVTGRLQ---SSNSSVYAVGDVA 177 (358)
Q Consensus 103 ~~~v~~i~~~~~g~v~~v~~~~g~~i-~~D~vi~a~G~~p~~~l~~~~~-~~~~g~i~vd~~~~---t~~~~VyAiGD~~ 177 (358)
..|.++.. ..+.+.||+++ ++|.||+|||++....+++..+ ...++.+..-.++- -..|.+..+|=+-
T Consensus 300 -~~I~~~~~------~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~ 372 (531)
T PF00743_consen 300 -PDIKRFTE------NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQ 372 (531)
T ss_dssp -E-EEEE-S------SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SB
T ss_pred -cccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 12334431 14678899875 6999999999999888887653 33444433333321 1458899999764
Q ss_pred cccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320 178 AFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 211 (358)
Q Consensus 178 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 211 (358)
... +....+..|++.++.-+.|..
T Consensus 373 ~~g----------~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 373 PFG----------SIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp SSS-----------HHHHHHHHHHHHHHHHTTSS
T ss_pred ccc----------ccccccccccccccccccccc
Confidence 321 234467889999999887764
No 92
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.83 E-value=2.6e-08 Score=97.65 Aligned_cols=99 Identities=15% Similarity=0.278 Sum_probs=73.5
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCccc--CccCCHHHH---------HHHHHHHHhCCCEEEcCCeee
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCM--ARLFTPKIA---------SYYEEYYKSKGVKFVKGTVLS 107 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~~l--~~~~~~~~~---------~~~~~~l~~~gV~v~~~~~v~ 107 (358)
.+++||||||+.|+++|..|++.|. +||++++.+.+. ...+..... ..-.+.+.+.||+++.++.|+
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 5789999999999999999999876 799998875431 001222110 001344677899999999999
Q ss_pred EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320 108 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 108 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 143 (358)
.++. ++ ..+.+.+|+++.+|.+|+|||.+|..
T Consensus 83 ~id~-~~---~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGR-DT---RELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEEC-CC---CEEEECCCCEEEcCEEEEccCCCCCC
Confidence 9975 22 24667788899999999999999854
No 93
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.80 E-value=1.4e-07 Score=94.13 Aligned_cols=136 Identities=21% Similarity=0.268 Sum_probs=90.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc---------------------------------------
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL--------------------------------------- 80 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~--------------------------------------- 80 (358)
..++|+|||||++|+-+|..|.+.|.+|+++|+.+.+....
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 36899999999999999999999999999999865331100
Q ss_pred ----C----------------CHHHHHHHHHHHHhCCCE--EEcCCeeeEEEEcCCCcEEEEEcCC--Cc--EEecCeEE
Q 018320 81 ----F----------------TPKIASYYEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRD--GN--RLPTDMVV 134 (358)
Q Consensus 81 ----~----------------~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~g~v~~v~~~~--g~--~i~~D~vi 134 (358)
+ ..++.+++++..++.|+. +.++++|++++..+ ++ ..|++.+ +. +..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~-w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GK-WRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-Ce-EEEEEEcCCCceEEEEcCEEE
Confidence 0 035667777777888988 88999999998743 32 2344432 22 46799999
Q ss_pred EeeC--CCCChhhhhcccccccCcEEEeccccC----CCCcEEEEccccc
Q 018320 135 VGIG--IRPNTSLFEGQLTLEKGGIKVTGRLQS----SNSSVYAVGDVAA 178 (358)
Q Consensus 135 ~a~G--~~p~~~l~~~~~~~~~g~i~vd~~~~t----~~~~VyAiGD~~~ 178 (358)
+|+| ..|+..-+...-...+..+... .+++ ..++|.++|-..+
T Consensus 167 vAtG~~~~P~~P~ipG~~~f~G~~iHs~-~yr~~~~~~gk~VvVVG~G~S 215 (461)
T PLN02172 167 VCNGHYTEPNVAHIPGIKSWPGKQIHSH-NYRVPDPFKNEVVVVIGNFAS 215 (461)
T ss_pred EeccCCCCCcCCCCCCcccCCceEEEec-ccCCccccCCCEEEEECCCcC
Confidence 9999 5666543332211222222222 2332 3567888886544
No 94
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.80 E-value=4.6e-08 Score=86.37 Aligned_cols=98 Identities=29% Similarity=0.453 Sum_probs=67.7
Q ss_pred EEEcCcHHHHHHHHHHHhCCCc-EEEEeeCCccc--------------Ccc------------C----------------
Q 018320 45 VVIGGGYIGMECAASLVINKIN-VTMVFPEAHCM--------------ARL------------F---------------- 81 (358)
Q Consensus 45 vVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~~~l--------------~~~------------~---------------- 81 (358)
+|||||+.|+.+|..|.+.|.+ |+|+|+.+.+. +.. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 99999974431 000 0
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC--CCChh
Q 018320 82 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI--RPNTS 144 (358)
Q Consensus 82 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~--~p~~~ 144 (358)
.+++.+++++..++.+++++++++|++++.++++ ..+++.+++++.||.||+|+|. .|+..
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 1235577778888899999999999999986666 5688888889999999999996 55544
No 95
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.79 E-value=3.5e-08 Score=96.70 Aligned_cols=99 Identities=20% Similarity=0.326 Sum_probs=66.5
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------c-------C----
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------L-------F---- 81 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------~-------~---- 81 (358)
+|+|||||++|+-+|..+++.|.+|+|+|+.+++..+ + +
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 6899999999999999999999999999997544100 0 0
Q ss_pred --------------------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEE
Q 018320 82 --------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 135 (358)
Q Consensus 82 --------------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~ 135 (358)
..++.+.+.+.+++.||+++++++|.+++.+ ++.+..+++.++.++.+|.||+
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEE
Confidence 1235566777888899999999999999873 4455667777788999999999
Q ss_pred eeCCCCC
Q 018320 136 GIGIRPN 142 (358)
Q Consensus 136 a~G~~p~ 142 (358)
|+|..+.
T Consensus 161 AtGG~S~ 167 (409)
T PF03486_consen 161 ATGGKSY 167 (409)
T ss_dssp ----SSS
T ss_pred ecCCCCc
Confidence 9996543
No 96
>PRK06847 hypothetical protein; Provisional
Probab=98.78 E-value=8.5e-08 Score=92.94 Aligned_cols=102 Identities=24% Similarity=0.370 Sum_probs=79.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------------------------------------
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------------------------------------- 79 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~---------------------------------------- 79 (358)
+.++|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 3578999999999999999999999999999986531000
Q ss_pred ----cC-----------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeC
Q 018320 80 ----LF-----------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138 (358)
Q Consensus 80 ----~~-----------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G 138 (358)
.+ .+++.+.+.+.+.+.|++++.++++++++.++++ ..+.+.+|+++.+|.||.|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcC
Confidence 00 0234556666777789999999999999864333 457778899999999999999
Q ss_pred CCCCh
Q 018320 139 IRPNT 143 (358)
Q Consensus 139 ~~p~~ 143 (358)
..+..
T Consensus 161 ~~s~~ 165 (375)
T PRK06847 161 LYSKV 165 (375)
T ss_pred CCcch
Confidence 87765
No 97
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.78 E-value=4.4e-08 Score=97.32 Aligned_cols=101 Identities=19% Similarity=0.302 Sum_probs=72.7
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcc------cCcc----CC--HHHHHHHHHHHHhCCCEEEcCCeee
Q 018320 42 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC------MARL----FT--PKIASYYEEYYKSKGVKFVKGTVLS 107 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~------l~~~----~~--~~~~~~~~~~l~~~gV~v~~~~~v~ 107 (358)
+++||||||+.|+++|..|++++ .+|||+++.+.+ ++.. .+ .++.....+.+++.||+++.++.|+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 47999999999999999999875 489999998753 1111 11 1223333466788899999999999
Q ss_pred EEEEcCCCcEEEEEc-CCCcEEe--cCeEEEeeCCCCChh
Q 018320 108 SFDVDSNGKVVAVNL-RDGNRLP--TDMVVVGIGIRPNTS 144 (358)
Q Consensus 108 ~i~~~~~g~v~~v~~-~~g~~i~--~D~vi~a~G~~p~~~ 144 (358)
+++.+ +.. ..+.. .+++++. +|.+|+|+|.+|+..
T Consensus 81 ~id~~-~~~-v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 81 KVDAK-NKT-ITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEECC-CCE-EEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 99763 222 23332 2356666 999999999998754
No 98
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=98.68 E-value=1.3e-08 Score=81.38 Aligned_cols=82 Identities=21% Similarity=0.190 Sum_probs=59.4
Q ss_pred EEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHH
Q 018320 223 YSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKA 281 (358)
Q Consensus 223 ~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~a 281 (358)
+..++++.++++|+++.++...+ ..+..+|.|+.. ++|+|||+|++|+++.+ ++.++.+
T Consensus 3 ~~vft~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~a 82 (110)
T PF02852_consen 3 TVVFTDPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINELALA 82 (110)
T ss_dssp EEEESSSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHH
T ss_pred EEEECCCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHHHHHH
Confidence 35678999999999986532111 112234666654 58999999999988665 5788999
Q ss_pred HHcCCCcccHHHHhhcCCcccCCcCCC
Q 018320 282 TRLQPVVEDLAELETQGLGFALAVSQK 308 (358)
Q Consensus 282 i~~~~~~~dl~~l~~~~~~yap~~~~~ 308 (358)
|++++|++++.. . +.|+|+|++.
T Consensus 83 i~~~~t~~~l~~-~---~~~~Pt~se~ 105 (110)
T PF02852_consen 83 IQNGLTVEDLAD-D---IFYHPTFSEA 105 (110)
T ss_dssp HHTTSBHHHHHT-S---BSSSTSTGHH
T ss_pred HHcCCCHHHHhC-C---eeeCCChhHH
Confidence 999999996555 3 5889999864
No 99
>PRK07236 hypothetical protein; Provisional
Probab=98.67 E-value=1.7e-07 Score=91.54 Aligned_cols=102 Identities=25% Similarity=0.348 Sum_probs=75.0
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----cCCHHHHHHHH------------------------
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----LFTPKIASYYE------------------------ 90 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----~~~~~~~~~~~------------------------ 90 (358)
...+|+|||||++|+.+|..|++.|.+|+|+|+.+..... .+.+...+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 3578999999999999999999999999999998654321 02333222222
Q ss_pred -------------------HHHHh--CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320 91 -------------------EYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 91 -------------------~~l~~--~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 143 (358)
+.|.+ .+++++.++++++++.++++ ..+.+.+|+++.+|.||.|-|.++..
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR--VTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCchH
Confidence 11111 13579999999999864433 45788899999999999999977654
No 100
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.66 E-value=1.5e-06 Score=82.89 Aligned_cols=194 Identities=14% Similarity=0.204 Sum_probs=116.9
Q ss_pred CCCCCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCC-CcEEEEcCcHHHHHHHHHHHhC----CCcEEEEeeCCccc
Q 018320 3 MALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG-GNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCM 77 (358)
Q Consensus 3 ~~~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~-~~vvVIGgG~~gle~A~~L~~~----g~~Vtlv~~~~~~l 77 (358)
+|+.|..+ .....++||+. .++.+...+... ++|.|||||.+|.|+-..|... ..++.++.|++.++
T Consensus 156 ~P~IP~~f--~~l~~~~vfHs------s~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~ 227 (436)
T COG3486 156 QPYIPPCF--RSLIGERVFHS------SEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFL 227 (436)
T ss_pred CcCCChHH--hCcCccceeeh------HHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCC
Confidence 46666553 33333678853 222222222223 4499999999999999988754 44688899987665
Q ss_pred Cc--------cCCHHHH------------------------------HHHHHHH-H------hCCCEEEcCCeeeEEEEc
Q 018320 78 AR--------LFTPKIA------------------------------SYYEEYY-K------SKGVKFVKGTVLSSFDVD 112 (358)
Q Consensus 78 ~~--------~~~~~~~------------------------------~~~~~~l-~------~~gV~v~~~~~v~~i~~~ 112 (358)
|. .|.|+.. ..+-+.| + +..|.++.++.+++++..
T Consensus 228 p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~ 307 (436)
T COG3486 228 PMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPA 307 (436)
T ss_pred ccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecC
Confidence 42 1222211 1111111 1 246889999999999987
Q ss_pred CCCcEEEEEc-----CCCcEEecCeEEEeeCCCCChh-hhhc---cccc-ccCcEEEeccccCC--C---CcEEEEcccc
Q 018320 113 SNGKVVAVNL-----RDGNRLPTDMVVVGIGIRPNTS-LFEG---QLTL-EKGGIKVTGRLQSS--N---SSVYAVGDVA 177 (358)
Q Consensus 113 ~~g~v~~v~~-----~~g~~i~~D~vi~a~G~~p~~~-l~~~---~~~~-~~g~i~vd~~~~t~--~---~~VyAiGD~~ 177 (358)
++|++ .+.+ .+..++++|.||+|||++.... ++.. .+.+ ++|...|+..++.. . -.||+.|=+.
T Consensus 308 G~g~~-~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ 386 (436)
T COG3486 308 GDGRY-RLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAEL 386 (436)
T ss_pred CCceE-EEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccc
Confidence 77752 3333 2335789999999999985544 4432 2444 67889998776542 1 2699999776
Q ss_pred cccccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018320 178 AFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 211 (358)
Q Consensus 178 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 211 (358)
..... |.+ .+.--|.+.+. ..+.++|..
T Consensus 387 htHGi--g~p---dLsl~a~Raa~-I~~~L~g~~ 414 (436)
T COG3486 387 HTHGI--GAP---DLSLGAWRAAV-ILNSLLGRE 414 (436)
T ss_pred ccccc--CCc---cchHHHHHHHH-HHHHHhCcC
Confidence 64332 222 12223555444 456677765
No 101
>PRK10262 thioredoxin reductase; Provisional
Probab=98.64 E-value=8.8e-07 Score=84.23 Aligned_cols=101 Identities=11% Similarity=0.161 Sum_probs=71.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC---cc--------cCc----cCCHHHHHHHHHHHHhCCCEEEcCC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA---HC--------MAR----LFTPKIASYYEEYYKSKGVKFVKGT 104 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~---~~--------l~~----~~~~~~~~~~~~~l~~~gV~v~~~~ 104 (358)
+.++++|||||+.|+.+|..|+++|.++++++... .+ ++. ...+++.+.+.+.....++++..+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 56899999999999999999999999999997431 11 011 123455677777777788888765
Q ss_pred eeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 105 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 105 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
.++.++.. ++. ..+... ...+.+|.||+|+|.+|+..
T Consensus 84 ~v~~v~~~-~~~-~~v~~~-~~~~~~d~vilAtG~~~~~~ 120 (321)
T PRK10262 84 HINKVDLQ-NRP-FRLTGD-SGEYTCDALIIATGASARYL 120 (321)
T ss_pred EEEEEEec-CCe-EEEEec-CCEEEECEEEECCCCCCCCC
Confidence 56677652 332 234333 34789999999999998643
No 102
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.64 E-value=1.4e-07 Score=91.24 Aligned_cols=97 Identities=21% Similarity=0.307 Sum_probs=72.6
Q ss_pred cEEEEcCcHHHHHHHHHHHhC---CCcEEEEeeCCcccC-ccC---------CHHHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320 43 NAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMA-RLF---------TPKIASYYEEYYKSKGVKFVKGTVLSSF 109 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~---g~~Vtlv~~~~~~l~-~~~---------~~~~~~~~~~~l~~~gV~v~~~~~v~~i 109 (358)
+|||||||+.|+.+|..|.++ +.+|||+++.+...- +.+ ..++...+.+.+++.||+++.+ .|+++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999999643 689999998765311 101 1223334556677889999875 78899
Q ss_pred EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
+.+ ++ .|.+.+|+++++|.+|+|+|.+|+..
T Consensus 80 d~~--~~--~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 80 DPD--RR--KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred ecc--cC--EEEECCCCcccccEEEEccCCCCCCC
Confidence 752 22 46778888999999999999988754
No 103
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.63 E-value=1.2e-07 Score=91.48 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=70.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
.+++++|||+|++|+++|..|++.|.+|+++++.+.+... .++.+......+.+.+.|++++.++.+..+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~ 96 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP 96 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence 5789999999999999999999999999999998776421 12333344445667777999999988765532
Q ss_pred --cCCCcEEEEEc--CCCcEEecCeEEEeeCCC-CC
Q 018320 112 --DSNGKVVAVNL--RDGNRLPTDMVVVGIGIR-PN 142 (358)
Q Consensus 112 --~~~g~v~~v~~--~~g~~i~~D~vi~a~G~~-p~ 142 (358)
..+........ .++..+.+|.||+|+|.. |.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~ 132 (352)
T PRK12770 97 LHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSR 132 (352)
T ss_pred cccccccccccccCCHHHHHhhCCEEEEEeCCCCCC
Confidence 01111111111 112247899999999984 44
No 104
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.60 E-value=5.8e-07 Score=83.62 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=73.4
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------------------------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------- 79 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------- 79 (358)
+|+|||||+.|+-+|..|++.|.+|+++|+.+.+...
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 5899999999999999999999999999988542110
Q ss_pred ------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-CCcEEecCeEEEeeCCCC
Q 018320 80 ------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRP 141 (358)
Q Consensus 80 ------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~vi~a~G~~p 141 (358)
.-..++.+.+.+.+.+.|++++.+++++++..++++ + .+.+. ++.++.+|.||.|+|...
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~-~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-V-VVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-E-EEEEcCccEEEEeCEEEECCCcch
Confidence 001234566677778889999999999998764333 2 33333 346799999999999764
No 105
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.60 E-value=2.6e-07 Score=91.43 Aligned_cols=102 Identities=25% Similarity=0.371 Sum_probs=72.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccC---------C-HHHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF---------T-PKIASYYEEYYKSKGVKFVKGTVLSSF 109 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~---------~-~~~~~~~~~~l~~~gV~v~~~~~v~~i 109 (358)
+.+++||||||+.|+.+|..|.+.+.+||||++.+++.-... + .++...+.+.+++.+++++. .+|++|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEEEE
Confidence 457999999999999999999877889999998876421111 1 22333345566677898875 488999
Q ss_pred EEcCCCcEEEEEc--------CCCcEEecCeEEEeeCCCCChh
Q 018320 110 DVDSNGKVVAVNL--------RDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 110 ~~~~~g~v~~v~~--------~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
+.+ +..+ .+.. .+|.++++|.+|+|+|.+|+..
T Consensus 88 d~~-~~~v-~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 88 DFE-EKRV-KCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred EcC-CCEE-EEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 762 3322 2211 4567899999999999987643
No 106
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.60 E-value=1.7e-07 Score=100.69 Aligned_cols=93 Identities=23% Similarity=0.196 Sum_probs=73.0
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------c-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
.+|+|+|||||+.|+.+|..|++.|++||++++.+.+.. . -++.++.+...+.+++.||+|++++.+-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence 579999999999999999999999999999999875432 1 1355666777778889999999886542
Q ss_pred cCCCcEEEEEcCCCcEEecCeEEEeeCCC-CC
Q 018320 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR-PN 142 (358)
Q Consensus 112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~-p~ 142 (358)
..+.+.+.....+|.|++|+|.. |.
T Consensus 381 ------~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 381 ------KTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred ------cEEeHHHhccccCCEEEEeCCCCCCC
Confidence 12455555566799999999984 54
No 107
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.59 E-value=1.8e-07 Score=99.27 Aligned_cols=98 Identities=20% Similarity=0.372 Sum_probs=74.3
Q ss_pred EEEEcCcHHHHHHHHHHHhC---CCcEEEEeeCCccc------CccCC-----HHHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320 44 AVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCM------ARLFT-----PKIASYYEEYYKSKGVKFVKGTVLSSF 109 (358)
Q Consensus 44 vvVIGgG~~gle~A~~L~~~---g~~Vtlv~~~~~~l------~~~~~-----~~~~~~~~~~l~~~gV~v~~~~~v~~i 109 (358)
+||||+|+.|+.+|..|.++ +.+|||+++.+++. +..+. +++.....+.+++.||++++++.|++|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 68999999999999999876 46899999887641 11111 122222356678899999999999999
Q ss_pred EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhh
Q 018320 110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL 145 (358)
Q Consensus 110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l 145 (358)
+.. . ..|.+.+|+++++|.+|+|||.+|+...
T Consensus 81 d~~--~--k~V~~~~g~~~~yD~LVlATGs~p~~p~ 112 (785)
T TIGR02374 81 DTD--Q--KQVITDAGRTLSYDKLILATGSYPFILP 112 (785)
T ss_pred ECC--C--CEEEECCCcEeeCCEEEECCCCCcCCCC
Confidence 752 2 2466788889999999999999987543
No 108
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.56 E-value=3.6e-07 Score=97.64 Aligned_cols=91 Identities=27% Similarity=0.292 Sum_probs=69.0
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------c-CCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------L-FTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-------~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
.+|+|+|||||+.|+.+|..|++.|.+|+|+++.+.+... . ++.+....-.+.+++.||++++++.+ .+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~- 615 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT- 615 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence 4689999999999999999999999999999987754221 1 24445555556778899999999876 222
Q ss_pred cCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
+.+.+...+|.||+|||.++.
T Consensus 616 ----------le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 616 ----------VEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred ----------hhhheeccCCEEEECcCCCCC
Confidence 122344568999999998754
No 109
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.56 E-value=1.8e-07 Score=93.39 Aligned_cols=90 Identities=23% Similarity=0.292 Sum_probs=70.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------c-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
.+++|+|||||+.|+++|..|++.|.+|+++++.+.+.. . .++.++.....+.+++.||++++++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence 468999999999999999999999999999999876521 1 13567777778888999999999886521
Q ss_pred cCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR 140 (358)
Q Consensus 112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 140 (358)
.+.+.+. .+.+|.||+|+|..
T Consensus 216 -------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHH-HhhCCEEEEccCCC
Confidence 1222222 37799999999985
No 110
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.56 E-value=3e-07 Score=97.97 Aligned_cols=100 Identities=17% Similarity=0.337 Sum_probs=75.6
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhC----CCcEEEEeeCCccc------CccC----CHHHHHHHHHHHHhCCCEEEcCCee
Q 018320 41 GGNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCM------ARLF----TPKIASYYEEYYKSKGVKFVKGTVL 106 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~----g~~Vtlv~~~~~~l------~~~~----~~~~~~~~~~~l~~~gV~v~~~~~v 106 (358)
.+++||||+|+.|+.+|..|.++ +.+||++++.+++. +..+ ..++.....+.+++.||+++.++.|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 35899999999999999999765 47899999887642 1111 1122222345678899999999999
Q ss_pred eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
++++. +. ..|.+.+|+++++|.+|+|||.+|...
T Consensus 83 ~~Id~--~~--~~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 83 ITINR--QE--KVIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred EEEeC--CC--cEEEECCCcEEECCEEEECCCCCcCCC
Confidence 99975 22 246677888999999999999998754
No 111
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.7e-06 Score=81.58 Aligned_cols=99 Identities=16% Similarity=0.294 Sum_probs=75.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCCc---c--------cC----ccCCHHHHHHHHHHHHhCCCEEEcCCe
Q 018320 42 GNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH---C--------MA----RLFTPKIASYYEEYYKSKGVKFVKGTV 105 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~~---~--------l~----~~~~~~~~~~~~~~l~~~gV~v~~~~~ 105 (358)
.+|+|||||+.|+.+|..+.+.+.+ +.|++.... + .| ....+++.+.+.++.+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 4799999999999999999999998 555554311 1 11 124567888888888889999997 67
Q ss_pred eeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 106 LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 106 v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
+.+++..++ ...+++.+++ +.++.||+|+|..+...
T Consensus 83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 778875322 4678888877 99999999999876654
No 112
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.55 E-value=3.5e-07 Score=88.76 Aligned_cols=99 Identities=25% Similarity=0.403 Sum_probs=76.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcccCccC----------CHHHHHHHHHHHHhCC-CEEEcCCeee
Q 018320 41 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMARLF----------TPKIASYYEEYYKSKG-VKFVKGTVLS 107 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~~g-V~v~~~~~v~ 107 (358)
.+++||||||+.|+.+|..|.+.- .+||+|++.+..+-..+ +.++...+.+.+++.+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 579999999999999999999974 89999999876432111 2344555677777555 999865 788
Q ss_pred EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 108 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 108 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
+|+. +. ..|.+.++..+++|.+|+++|.++++.
T Consensus 82 ~ID~--~~--k~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 82 DIDR--DA--KKVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred EEcc--cC--CEEEeCCCccccccEEEEecCCcCCcC
Confidence 9975 23 256777778899999999999998875
No 113
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.53 E-value=2.5e-07 Score=88.71 Aligned_cols=117 Identities=22% Similarity=0.324 Sum_probs=69.7
Q ss_pred CCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCcccCc--------cCCHHH--
Q 018320 18 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMAR--------LFTPKI-- 85 (358)
Q Consensus 18 ~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~~l~~--------~~~~~~-- 85 (358)
++|++...+..... . ...+++|+|||||.+|.|++..|.+.+. +|+++.|++.+.+. .++|+.
T Consensus 172 ~~v~Hss~~~~~~~--~---~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~ 246 (341)
T PF13434_consen 172 PRVFHSSEYLSRID--Q---SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVD 246 (341)
T ss_dssp TTEEEGGGHHHHHT----------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHH
T ss_pred CCEEEehHhhhccc--c---ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhh
Confidence 67887655433221 1 2257899999999999999999999875 89999998765331 233332
Q ss_pred -----------------------------HHHHHHH-----H-HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC---C--
Q 018320 86 -----------------------------ASYYEEY-----Y-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G-- 125 (358)
Q Consensus 86 -----------------------------~~~~~~~-----l-~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g-- 125 (358)
.+.+.+. + .+..++++.+++|++++.+++|.+ .+.+.+ +
T Consensus 247 ~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~~~~~~~ 325 (341)
T PF13434_consen 247 YFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRHRQTGEE 325 (341)
T ss_dssp HHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEETTT--E
T ss_pred hhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEECCCCCe
Confidence 2122111 1 223588999999999988665443 344433 2
Q ss_pred cEEecCeEEEeeCCC
Q 018320 126 NRLPTDMVVVGIGIR 140 (358)
Q Consensus 126 ~~i~~D~vi~a~G~~ 140 (358)
.++++|.||+|||++
T Consensus 326 ~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 326 ETLEVDAVILATGYR 340 (341)
T ss_dssp EEEEESEEEE---EE
T ss_pred EEEecCEEEEcCCcc
Confidence 468999999999974
No 114
>PRK06834 hypothetical protein; Provisional
Probab=98.52 E-value=1.4e-06 Score=87.85 Aligned_cols=100 Identities=27% Similarity=0.392 Sum_probs=76.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---Cc--cCC----------------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---AR--LFT---------------------------------- 82 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---~~--~~~---------------------------------- 82 (358)
.+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.+. ++ .+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 579999999999999999999999999999865321 00 000
Q ss_pred ----------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320 83 ----------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 83 ----------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 143 (358)
..+.+.+.+.+++.||+++.++++++++.++++ ..+++.+|+++.+|.||.|.|.++..
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCc
Confidence 122334455667789999999999999875444 34666788899999999999988754
No 115
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.52 E-value=1.8e-06 Score=88.33 Aligned_cols=98 Identities=19% Similarity=0.318 Sum_probs=74.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc------------Cc---cCCHHHHHHHHHHHHhCCCEEEcCCee
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------AR---LFTPKIASYYEEYYKSKGVKFVKGTVL 106 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l------------~~---~~~~~~~~~~~~~l~~~gV~v~~~~~v 106 (358)
.+|+|||||+.|+.+|..|++.|.+|+|+++.+ +. +. ....++.+.+.+.+++.|++++ ++.+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V 82 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV 82 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence 579999999999999999999999999999853 21 11 0124566777778888899986 6678
Q ss_pred eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
++++.+ +....+.+.++ .+.+|.+|+|+|.+|...
T Consensus 83 ~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 83 LDVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEEec--CCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 888752 23334555555 689999999999988654
No 116
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.51 E-value=7.3e-07 Score=88.60 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=68.8
Q ss_pred CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCccc------CccCCH---HHHHHH----HHHHHhCCCEEEcCCee
Q 018320 42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM------ARLFTP---KIASYY----EEYYKSKGVKFVKGTVL 106 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l------~~~~~~---~~~~~~----~~~l~~~gV~v~~~~~v 106 (358)
++|||||||+.|+.+|..|+++ +.+|+|+++.+.+. +..... ...+.+ .+..++.||+++.+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 4799999999999999999987 67899999986532 111100 000111 23335679999999999
Q ss_pred eEEEEcCCCcEEEEEcCC-Cc--EEecCeEEEeeCCCCChh
Q 018320 107 SSFDVDSNGKVVAVNLRD-GN--RLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 107 ~~i~~~~~g~v~~v~~~~-g~--~i~~D~vi~a~G~~p~~~ 144 (358)
++|+. ++. ...+...+ ++ ++++|.+|+|||.+|+..
T Consensus 82 ~~Id~-~~~-~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~ 120 (438)
T PRK13512 82 IAIND-ERQ-TVTVLNRKTNEQFEESYDKLILSPGASANSL 120 (438)
T ss_pred EEEEC-CCC-EEEEEECCCCcEEeeecCEEEECCCCCCCCC
Confidence 99986 233 22333222 22 478999999999998753
No 117
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.51 E-value=1.3e-06 Score=85.25 Aligned_cols=101 Identities=23% Similarity=0.357 Sum_probs=76.7
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc--------------Cc---------------------------
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------------AR--------------------------- 79 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l--------------~~--------------------------- 79 (358)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+- +.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 4689999999999999999999999999999864210 00
Q ss_pred ---------cCC---------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEE
Q 018320 80 ---------LFT---------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 135 (358)
Q Consensus 80 ---------~~~---------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~ 135 (358)
.++ ..+.+.+.+.+++.|++++.++++++++.++++ ..+++.+|+++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR--VRLRLDDGRRLEAALAIA 163 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe--EEEEECCCCEEEeCEEEE
Confidence 000 123344455667789999999999999864433 347778888999999999
Q ss_pred eeCCCCCh
Q 018320 136 GIGIRPNT 143 (358)
Q Consensus 136 a~G~~p~~ 143 (358)
|.|..+..
T Consensus 164 AdG~~S~v 171 (392)
T PRK08773 164 ADGAASTL 171 (392)
T ss_pred ecCCCchH
Confidence 99998754
No 118
>PRK07045 putative monooxygenase; Reviewed
Probab=98.51 E-value=1.6e-06 Score=84.66 Aligned_cols=102 Identities=23% Similarity=0.271 Sum_probs=77.1
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC---------c--------------------c------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------R--------------------L------------ 80 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~---------~--------------------~------------ 80 (358)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. . .
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 85 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL 85 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence 4899999999999999999999999999998654310 0 0
Q ss_pred -----------CC-------HHHHHHHHHHHH-hCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320 81 -----------FT-------PKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 141 (358)
Q Consensus 81 -----------~~-------~~~~~~~~~~l~-~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 141 (358)
.+ .++.+.+.+.+. ..|++++++++++.++.++++.+..+++.+|+++.+|.||.|.|.+.
T Consensus 86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 00 012233333443 35799999999999987666655578888999999999999999876
Q ss_pred Ch
Q 018320 142 NT 143 (358)
Q Consensus 142 ~~ 143 (358)
..
T Consensus 166 ~v 167 (388)
T PRK07045 166 MI 167 (388)
T ss_pred HH
Confidence 44
No 119
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.50 E-value=1.3e-06 Score=85.38 Aligned_cols=101 Identities=23% Similarity=0.283 Sum_probs=74.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------------------------------cC-----
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------LF----- 81 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------~~----- 81 (358)
+.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... ..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 578999999999999999999999999999987543110 00
Q ss_pred --------C----------------HHHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEe
Q 018320 82 --------T----------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 136 (358)
Q Consensus 82 --------~----------------~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a 136 (358)
+ .++.+.+.+.+.+. +|+++.++++++++.++++ ..+.+.+|+++.+|.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--VTVFDQQGNRWTGDALIGC 161 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--eEEEEcCCCEEecCEEEEC
Confidence 0 01122233344444 4999999999999864333 3577788889999999999
Q ss_pred eCCCCCh
Q 018320 137 IGIRPNT 143 (358)
Q Consensus 137 ~G~~p~~ 143 (358)
.|..+..
T Consensus 162 dG~~S~~ 168 (396)
T PRK08163 162 DGVKSVV 168 (396)
T ss_pred CCcChHH
Confidence 9987654
No 120
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.49 E-value=9.8e-07 Score=87.90 Aligned_cols=96 Identities=20% Similarity=0.343 Sum_probs=68.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----------------------------------CC----
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------------------------FT---- 82 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----------------------------------~~---- 82 (358)
-.++|||||+.|+++|..++++|.+|+|+++. .+.... ++
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (446)
T TIGR01424 3 YDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKL 81 (446)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHH
Confidence 36999999999999999999999999999974 221110 01
Q ss_pred --------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 83 --------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 83 --------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
.++.+.+++.+++.||+++.+ ++..++. ..+ .+. .+|+++.+|.||+|||.+|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~---~~v-~v~-~~g~~~~~d~lIiATGs~p~~p 145 (446)
T TIGR01424 82 LQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP---NTV-EVL-QDGTTYTAKKILIAVGGRPQKP 145 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC---CEE-EEe-cCCeEEEcCEEEEecCCcCCCC
Confidence 012344556677889999876 5555532 222 232 4677899999999999998654
No 121
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.49 E-value=8.1e-07 Score=85.88 Aligned_cols=95 Identities=24% Similarity=0.341 Sum_probs=69.8
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEe-eCCcccC-------------------------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVF-PEAHCMA------------------------------------------- 78 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~-~~~~~l~------------------------------------------- 78 (358)
+|+|||||..|+|+|..+++.|.+|.|+. +.+.+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 48999999999999999999999999994 3222200
Q ss_pred ---c------cCCH-HHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320 79 ---R------LFTP-KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 139 (358)
Q Consensus 79 ---~------~~~~-~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~ 139 (358)
. +.|. .....+.+.+++ .+++++ ..+|+++.. +++++..|.+.+|.++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0 1122 234555666766 689987 568999976 678999999999999999999999998
No 122
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.49 E-value=3.5e-07 Score=91.16 Aligned_cols=93 Identities=23% Similarity=0.263 Sum_probs=70.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Cc-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
.+++|+|||+|+.|+++|..|++.|.+|+++++.+.+. +. .++.++.....+.+++.||++++++.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK--- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence 35789999999999999999999999999999876542 11 14567777777788899999999875411
Q ss_pred cCCCcEEEEEcCCCcEEecCeEEEeeCC-CCCh
Q 018320 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT 143 (358)
Q Consensus 112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~-~p~~ 143 (358)
.+.+.+. ...+|.||+|+|. .|..
T Consensus 209 -------~v~~~~~-~~~yd~viiAtGa~~p~~ 233 (449)
T TIGR01316 209 -------TATLEEL-FSQYDAVFIGTGAGLPKL 233 (449)
T ss_pred -------cCCHHHH-HhhCCEEEEeCCCCCCCc
Confidence 1233322 3469999999997 5653
No 123
>PLN02463 lycopene beta cyclase
Probab=98.49 E-value=1.2e-06 Score=86.96 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=73.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-CccC---------------------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-ARLF--------------------------------------- 81 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-~~~~--------------------------------------- 81 (358)
-+|+|||||+.|+.+|..|++.|.+|.++++.+... +...
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 479999999999999999999999999999865321 1100
Q ss_pred ----CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 82 ----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 82 ----~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
..++.+.+.+.+.+.||+++ ..+|++++.++++ ..|.+++|+++.+|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence 01223445555667899997 5689999864333 4677889989999999999998754
No 124
>PRK07588 hypothetical protein; Provisional
Probab=98.47 E-value=2e-06 Score=84.00 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=71.9
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------------------------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------- 79 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------- 79 (358)
+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 6999999999999999999999999999986543100
Q ss_pred -cCC-----------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320 80 -LFT-----------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 141 (358)
Q Consensus 80 -~~~-----------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 141 (358)
.++ .++.+.+.+.+ ..++++++++++++++.++++ ..+.+++|+++.+|.||.|.|.++
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDG--VRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCe--EEEEECCCCEEEeCEEEECCCCCc
Confidence 000 00111122222 347999999999999874433 357888999999999999999876
Q ss_pred Ch
Q 018320 142 NT 143 (358)
Q Consensus 142 ~~ 143 (358)
..
T Consensus 159 ~v 160 (391)
T PRK07588 159 HV 160 (391)
T ss_pred cc
Confidence 54
No 125
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.47 E-value=1.4e-06 Score=84.83 Aligned_cols=98 Identities=15% Similarity=0.261 Sum_probs=70.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCccc--CccC--------C-HHHHH-HHHHHHHhCCCEEEcCCeee
Q 018320 42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM--ARLF--------T-PKIAS-YYEEYYKSKGVKFVKGTVLS 107 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l--~~~~--------~-~~~~~-~~~~~l~~~gV~v~~~~~v~ 107 (358)
+++||||||+.|+.+|..|++. ..+||++.+.+... ...+ . .++.. ...+.+++.||+++.+++|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 5899999999999999999886 45799998876421 1111 1 11221 13345677899999999999
Q ss_pred EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 108 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 108 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
+++. ++. .+.+ ++.++.+|.+|+|||.+|...
T Consensus 83 ~id~-~~~---~v~~-~~~~~~yd~LVlATG~~~~~p 114 (377)
T PRK04965 83 DIDA-EAQ---VVKS-QGNQWQYDKLVLATGASAFVP 114 (377)
T ss_pred EEEC-CCC---EEEE-CCeEEeCCEEEECCCCCCCCC
Confidence 9975 222 2333 577899999999999988654
No 126
>PRK08244 hypothetical protein; Provisional
Probab=98.47 E-value=1.9e-06 Score=86.97 Aligned_cols=102 Identities=24% Similarity=0.335 Sum_probs=74.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------ 79 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------ 79 (358)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 46999999999999999999999999999986432100
Q ss_pred cC--------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-cEEecCeEEEeeCCCCCh
Q 018320 80 LF--------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 80 ~~--------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~ 143 (358)
.+ -..+.+.+.+.+++.|++++.++++++++.++++....+...+| +++.+|.||.|.|.++..
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 00 01234555566677899999999999998755442222333356 479999999999988754
No 127
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.46 E-value=1.2e-06 Score=83.42 Aligned_cols=55 Identities=29% Similarity=0.433 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
...+.+.+++.|++++++++|++++. +++.+..|.+.+|+ +.+|.||+|+|....
T Consensus 150 ~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 150 IQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSP 204 (358)
T ss_dssp HHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred hhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEecccccce
Confidence 34455667778999999999999987 45566668999987 999999999997543
No 128
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=98.45 E-value=3.8e-06 Score=77.66 Aligned_cols=192 Identities=17% Similarity=0.246 Sum_probs=128.1
Q ss_pred CCccCCCCC----CCCCCeEEecCHHHHHHHHHHHhcCCCCcEE---------EEcCcHHHHHHHHH-HHhCCC--cEEE
Q 018320 6 KLEEFGLSG----SDAENVCYLRDLADANRLVNVMKSCSGGNAV---------VIGGGYIGMECAAS-LVINKI--NVTM 69 (358)
Q Consensus 6 ~P~~~~ipG----~~~~~v~~l~~~~da~~i~~~l~~~~~~~vv---------VIGgG~~gle~A~~-L~~~g~--~Vtl 69 (358)
+.+.-.|+| .+.|+|.+..+...+++..+.+...+..+++ --|+-.-.+-+++. ++++|. ++.+
T Consensus 144 ql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~i 223 (446)
T KOG3851|consen 144 QLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANI 223 (446)
T ss_pred eeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccE
Confidence 334445666 4668999999998888888777755443332 23555556666655 555665 3555
Q ss_pred EeeCCcccCccCC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-C--cEEecCeEEEeeCCCCChhh
Q 018320 70 VFPEAHCMARLFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-G--NRLPTDMVVVGIGIRPNTSL 145 (358)
Q Consensus 70 v~~~~~~l~~~~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g--~~i~~D~vi~a~G~~p~~~l 145 (358)
+..-. ++..|+ ...++.+++..++++|++.....+.++..++...+.. .+.+ | .+++++++-+....++...+
T Consensus 224 iy~Ts--l~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe-~L~kPG~t~ei~yslLHv~Ppms~pe~l 300 (446)
T KOG3851|consen 224 IYNTS--LPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFE-NLDKPGVTEEIEYSLLHVTPPMSTPEVL 300 (446)
T ss_pred EEecC--ccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHH-hcCCCCceeEEeeeeeeccCCCCChhhh
Confidence 43321 344444 3457788888899999999999998887633221111 1222 4 46889999998888877666
Q ss_pred hhcccccccCcEEEec-cccC-CCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320 146 FEGQLTLEKGGIKVTG-RLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208 (358)
Q Consensus 146 ~~~~~~~~~g~i~vd~-~~~t-~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 208 (358)
....+....|++.||. .+|. ..||||+||||...|.. ..++....|...+-.|+.
T Consensus 301 ~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~Pns--------KTaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 301 ANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNS--------KTAAAVAAQSPVVDKNLT 357 (446)
T ss_pred hcCcccCcccceecChhhhccccCCCceeeccccCCCch--------hhHHHHHhcCchhhhhHH
Confidence 6666666789999994 5665 89999999999998764 334444456666666665
No 129
>PRK12831 putative oxidoreductase; Provisional
Probab=98.45 E-value=4.8e-07 Score=90.49 Aligned_cols=94 Identities=24% Similarity=0.320 Sum_probs=68.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Ccc-CCH-HHHHHHHHHHHhCCCEEEcCCeeeEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------ARL-FTP-KIASYYEEYYKSKGVKFVKGTVLSSFD 110 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~~-~~~-~~~~~~~~~l~~~gV~v~~~~~v~~i~ 110 (358)
.+++|+|||||+.|+.+|..|+++|++|+++++.+.+. +.. ++. ++.....+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 47899999999999999999999999999999876531 110 222 3556666788889999999985521
Q ss_pred EcCCCcEEEEEcCCC-cEEecCeEEEeeCC-CCCh
Q 018320 111 VDSNGKVVAVNLRDG-NRLPTDMVVVGIGI-RPNT 143 (358)
Q Consensus 111 ~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~-~p~~ 143 (358)
.+.+.+. +.+.+|.||+|+|. .|..
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCCC
Confidence 1222332 34579999999997 4643
No 130
>PRK05868 hypothetical protein; Validated
Probab=98.45 E-value=1.8e-06 Score=83.89 Aligned_cols=100 Identities=20% Similarity=0.205 Sum_probs=73.2
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--c--CC-------------HH--------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--L--FT-------------PK-------------------- 84 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--~--~~-------------~~-------------------- 84 (358)
++|+|||||+.|+.+|..|++.|.+|+++|+.+.+... . +. ++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 47999999999999999999999999999986543110 0 00 00
Q ss_pred ---------------------HHHHHHHHHH---hCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320 85 ---------------------IASYYEEYYK---SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 140 (358)
Q Consensus 85 ---------------------~~~~~~~~l~---~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 140 (358)
....+.+.|. ..|+++++++++++++.++++ ..+.+.+|+++.+|+||-|-|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDS--VRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCe--EEEEECCCCeEEeCEEEECCCCC
Confidence 0112223332 358999999999999764333 46788999999999999999987
Q ss_pred CCh
Q 018320 141 PNT 143 (358)
Q Consensus 141 p~~ 143 (358)
...
T Consensus 160 S~v 162 (372)
T PRK05868 160 SNV 162 (372)
T ss_pred chH
Confidence 654
No 131
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.44 E-value=2.3e-06 Score=83.99 Aligned_cols=100 Identities=16% Similarity=0.259 Sum_probs=74.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc----------ccCc--cCC---------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH----------CMAR--LFT--------------------------- 82 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~----------~l~~--~~~--------------------------- 82 (358)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+. ..++ .+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 4799999999999999999999999999998651 0000 000
Q ss_pred -----------------------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeE
Q 018320 83 -----------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133 (358)
Q Consensus 83 -----------------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~v 133 (358)
..+.+.+.+.+++.|++++.++++++++.++++ ..+.+.+|+++.+|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 011223344556679999999999999875444 3577788889999999
Q ss_pred EEeeCCCCCh
Q 018320 134 VVGIGIRPNT 143 (358)
Q Consensus 134 i~a~G~~p~~ 143 (358)
|.|.|..+..
T Consensus 161 VgAdG~~S~v 170 (405)
T PRK05714 161 VAADGANSAV 170 (405)
T ss_pred EEecCCCchh
Confidence 9999987654
No 132
>PLN02661 Putative thiazole synthesis
Probab=98.44 E-value=1e-05 Score=77.25 Aligned_cols=167 Identities=15% Similarity=0.177 Sum_probs=102.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhC-CCcEEEEeeCCcccC----------c----------------cCC----------
Q 018320 40 SGGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMA----------R----------------LFT---------- 82 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~-g~~Vtlv~~~~~~l~----------~----------------~~~---------- 82 (358)
..-+|+|||+|..|+-+|..|++. |.+|+++++...+.. . .++
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h 170 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH 170 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence 345899999999999999999976 899999998754311 0 001
Q ss_pred -HHHHHHHH-HHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc------CC--------CcEEecCeEEEeeCCCCChh--
Q 018320 83 -PKIASYYE-EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL------RD--------GNRLPTDMVVVGIGIRPNTS-- 144 (358)
Q Consensus 83 -~~~~~~~~-~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~------~~--------g~~i~~D~vi~a~G~~p~~~-- 144 (358)
.+....+. +.+++.||+++.++.+.++.. +++++..+.+ .+ ...+.++.||+|||..+...
T Consensus 171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~ 249 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT 249 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhh
Confidence 11111223 334457899999999999876 4566666653 11 12689999999999654321
Q ss_pred hhhcc--ccc-c--c--CcEEEe--c-----cccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018320 145 LFEGQ--LTL-E--K--GGIKVT--G-----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 210 (358)
Q Consensus 145 l~~~~--~~~-~--~--g~i~vd--~-----~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~ 210 (358)
..+.. +.. . . ....++ | +-+--.|++|++|-.+.-- .|.+++-|.-..=...|+.||+.|+..
T Consensus 250 ~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~---~g~~rmgp~fg~m~~sg~k~a~~~~~~ 326 (357)
T PLN02661 250 GVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEI---DGSPRMGPTFGAMMISGQKAAHLALKA 326 (357)
T ss_pred hhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhh---cCCCccCchhHhHHhhhHHHHHHHHHH
Confidence 11110 000 0 0 111111 0 1111479999999887642 355555555554456788888877654
No 133
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.43 E-value=3.9e-06 Score=85.12 Aligned_cols=136 Identities=27% Similarity=0.325 Sum_probs=87.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------------------------------C----------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------------F---------- 81 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------------------------------~---------- 81 (358)
|+|+|||+|++|+-.|..|.+.|.+++++|+.+.+.... +
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 799999999999999999999999999999976541100 0
Q ss_pred -CHHHHHHHHHHHHhCCC--EEEcCCeeeEEEEcCC----CcEEEEEcC-CCc--EEecCeEEEeeCCC--CChhh--hh
Q 018320 82 -TPKIASYYEEYYKSKGV--KFVKGTVLSSFDVDSN----GKVVAVNLR-DGN--RLPTDMVVVGIGIR--PNTSL--FE 147 (358)
Q Consensus 82 -~~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~~~~----g~v~~v~~~-~g~--~i~~D~vi~a~G~~--p~~~l--~~ 147 (358)
..++.++++.+.++.++ .+.++++|++++..++ ++ ..|++. +|+ +..+|.|++|+|.. |+... +.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~-W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~ 160 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGK-WEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP 160 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETE-EEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCce-EEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence 14678888888887776 6889999999987544 33 234443 443 35689999999954 55442 21
Q ss_pred cccccccCcEEEeccccC----CCCcEEEEcccccc
Q 018320 148 GQLTLEKGGIKVTGRLQS----SNSSVYAVGDVAAF 179 (358)
Q Consensus 148 ~~~~~~~g~i~vd~~~~t----~~~~VyAiGD~~~~ 179 (358)
+++.=.|.|.-...++. ..++|.++|-..+.
T Consensus 161 -G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg 195 (531)
T PF00743_consen 161 -GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSG 195 (531)
T ss_dssp -TGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHH
T ss_pred -hhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhH
Confidence 22222355554444443 46789999987653
No 134
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.42 E-value=3e-06 Score=82.84 Aligned_cols=101 Identities=21% Similarity=0.292 Sum_probs=76.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC-CcccCcc---------------C-----------------------
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCMARL---------------F----------------------- 81 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~-~~~l~~~---------------~----------------------- 81 (358)
..+|+|||||++|+-+|..|++.|.+|+|+|+. +.+.+.. +
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 357999999999999999999999999999997 2221100 0
Q ss_pred ---------------------CHHHHHHHHHHHHhCC-CEEEcCCeeeEEEEcCCCcEEEEEcC-CCcEEecCeEEEeeC
Q 018320 82 ---------------------TPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIG 138 (358)
Q Consensus 82 ---------------------~~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~vi~a~G 138 (358)
-.++...+.+.+.+.+ |+++.+++|+.++.+++ .+. ++++ ||+++.||+||-|-|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v~-v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GVT-VTLSFDGETLDADLLVGADG 159 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ceE-EEEcCCCcEEecCEEEECCC
Confidence 0124455566666555 99999999999987443 333 6677 999999999999999
Q ss_pred CCCCh
Q 018320 139 IRPNT 143 (358)
Q Consensus 139 ~~p~~ 143 (358)
..+..
T Consensus 160 ~~S~v 164 (387)
T COG0654 160 ANSAV 164 (387)
T ss_pred CchHH
Confidence 76543
No 135
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.42 E-value=2.8e-06 Score=83.13 Aligned_cols=99 Identities=25% Similarity=0.436 Sum_probs=75.0
Q ss_pred cEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcccCc-----------------------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMAR----------------------------------------- 79 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~l~~----------------------------------------- 79 (358)
+|+|||||+.|+-+|..|++.| .+|+|+|+.+...+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 6999999999999999999995 999999986431000
Q ss_pred ----------cC---------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEE
Q 018320 80 ----------LF---------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 134 (358)
Q Consensus 80 ----------~~---------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi 134 (358)
.+ ..++.+.+.+.+.+.|++++.++++++++.++++ ..+++.+|+++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEE
Confidence 00 0123444556667789999999999999864333 35777888899999999
Q ss_pred EeeCCCCCh
Q 018320 135 VGIGIRPNT 143 (358)
Q Consensus 135 ~a~G~~p~~ 143 (358)
.|.|..+..
T Consensus 161 ~AdG~~S~v 169 (403)
T PRK07333 161 AADGARSKL 169 (403)
T ss_pred EcCCCChHH
Confidence 999987653
No 136
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.42 E-value=3.2e-06 Score=82.17 Aligned_cols=98 Identities=14% Similarity=0.299 Sum_probs=73.0
Q ss_pred cEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcccCc--------cCC-------------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMAR--------LFT------------------------------- 82 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~l~~--------~~~------------------------------- 82 (358)
.|+|||||+.|+-+|..|++.| .+|+|+|+.+.+-+. .+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 4899999999999999999999 999999986532110 000
Q ss_pred ------------------------HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEee
Q 018320 83 ------------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 137 (358)
Q Consensus 83 ------------------------~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~ 137 (358)
.++.+.+.+.+.+ .|++++.++++++++.++++ ..+.+.+|+++.+|.||.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence 1123333444555 49999999999999864444 35677888899999999999
Q ss_pred CCCCC
Q 018320 138 GIRPN 142 (358)
Q Consensus 138 G~~p~ 142 (358)
|....
T Consensus 159 G~~S~ 163 (382)
T TIGR01984 159 GANSK 163 (382)
T ss_pred CCChH
Confidence 97653
No 137
>PRK06184 hypothetical protein; Provisional
Probab=98.42 E-value=2.8e-06 Score=85.92 Aligned_cols=99 Identities=15% Similarity=0.232 Sum_probs=74.1
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------------c
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------L 80 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------------~ 80 (358)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... .
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 47999999999999999999999999999986433100 0
Q ss_pred ----------------------CC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc---CCCcEEecCeEE
Q 018320 81 ----------------------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVV 134 (358)
Q Consensus 81 ----------------------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~vi 134 (358)
++ ..+.+.+.+.+.+.|++++.++++++++.++++. .+.+ .+++++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGV--TARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcE--EEEEEeCCCeEEEEeCEEE
Confidence 00 1123445566777899999999999998755542 3444 456789999999
Q ss_pred EeeCCCCC
Q 018320 135 VGIGIRPN 142 (358)
Q Consensus 135 ~a~G~~p~ 142 (358)
.|.|.++.
T Consensus 162 gADG~~S~ 169 (502)
T PRK06184 162 GADGGRSF 169 (502)
T ss_pred ECCCCchH
Confidence 99998764
No 138
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.41 E-value=7.2e-06 Score=72.26 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=103.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------C-------------------------------CH
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------F-------------------------------TP 83 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------~-------------------------------~~ 83 (358)
...|+|||+|++|+.+|..|++.|.+|+++|+.-.+.... | +.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 3689999999999999999999999999999975442110 0 11
Q ss_pred HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-----------CCcEEecCeEEEeeCCCCChh-hh-hcc-
Q 018320 84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNTS-LF-EGQ- 149 (358)
Q Consensus 84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~-l~-~~~- 149 (358)
+....+....-+.|.++...+.++.+--.++.++..+..+ |.-.++++.|+=+||.....- ++ +..
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~ 189 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP 189 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence 2222333334456899999999988754233255555442 345789999999999765432 22 111
Q ss_pred ---cccc-cC--------cEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 150 ---LTLE-KG--------GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 150 ---~~~~-~g--------~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
.... .+ ...|+. -+--.|++|++|-.+.. ++|.++.-|.-.-=...|+.||+.++.
T Consensus 190 ~l~~~~~Ge~~mw~e~~E~lvV~~-T~eV~pgL~vaGMa~~a---v~G~pRMGPiFGgMllSGkkaAe~i~e 257 (262)
T COG1635 190 ELGIEVPGEKSMWAERGEDLVVEN-TGEVYPGLYVAGMAVNA---VHGLPRMGPIFGGMLLSGKKAAEEILE 257 (262)
T ss_pred ccccccCCCcchhhhHHHHHHHhc-cccccCCeEeehhhHHh---hcCCcccCchhhhhhhchHHHHHHHHH
Confidence 1110 01 112221 12247999999988764 235555545444445678888876653
No 139
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.41 E-value=8.5e-07 Score=88.81 Aligned_cols=92 Identities=22% Similarity=0.321 Sum_probs=70.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Cc-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
.+++|+|||+|++|+.+|..|++.|.+|+++++.+.+. +. .++.++.....+.+++.||+++.++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 46899999999999999999999999999999887642 11 146667667778889999999999866221
Q ss_pred cCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
+.+.+ ....+|.||+|+|..+.
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12469999999998764
No 140
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.39 E-value=4e-06 Score=81.66 Aligned_cols=99 Identities=22% Similarity=0.324 Sum_probs=74.2
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc---------cC-------------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------LF------------------------------- 81 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~---------~~------------------------------- 81 (358)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... .+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 47999999999999999999999999999987553110 00
Q ss_pred ------------------------CHHHHHHHHHHHHhCC-CEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEe
Q 018320 82 ------------------------TPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 136 (358)
Q Consensus 82 ------------------------~~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a 136 (358)
...+.+.+.+.+++.| ++++ ++++++++.++++ ..+++.+|+++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGA 162 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEe
Confidence 0122334445566666 9999 8899999764333 3577788888999999999
Q ss_pred eCCCCCh
Q 018320 137 IGIRPNT 143 (358)
Q Consensus 137 ~G~~p~~ 143 (358)
.|..+..
T Consensus 163 dG~~S~v 169 (388)
T PRK07608 163 DGAHSWV 169 (388)
T ss_pred CCCCchH
Confidence 9987643
No 141
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.38 E-value=4.8e-06 Score=82.50 Aligned_cols=98 Identities=21% Similarity=0.381 Sum_probs=72.2
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------------c---------CC----------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------L---------FT---------------- 82 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------------~---------~~---------------- 82 (358)
-+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..+ . +.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 47999999999999999999999999999986532100 0 00
Q ss_pred ----------------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320 83 ----------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 140 (358)
Q Consensus 83 ----------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 140 (358)
.++-+.+.+..++.|++++.+++|+++.. +++.+..+. .+|.++.+|.||.|+|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~-~~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE-eCCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 01122344556678999999999999876 345544443 567789999999999974
Q ss_pred C
Q 018320 141 P 141 (358)
Q Consensus 141 p 141 (358)
+
T Consensus 164 s 164 (428)
T PRK10157 164 S 164 (428)
T ss_pred H
Confidence 3
No 142
>PRK09126 hypothetical protein; Provisional
Probab=98.38 E-value=5e-06 Score=81.10 Aligned_cols=100 Identities=26% Similarity=0.400 Sum_probs=73.1
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Cc-----------------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR----------------------------------- 79 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~----------------------------------- 79 (358)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+- ..
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 479999999999999999999999999999875310 00
Q ss_pred --------cCCH---------------HHHHHHHHHH-HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEE
Q 018320 80 --------LFTP---------------KIASYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 135 (358)
Q Consensus 80 --------~~~~---------------~~~~~~~~~l-~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~ 135 (358)
.++. .+.+.+.+.+ +..|++++.++++++++.++++ ..+.+++|+++.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVA 161 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEE
Confidence 0000 0111222223 3468999999999999864333 357778899999999999
Q ss_pred eeCCCCCh
Q 018320 136 GIGIRPNT 143 (358)
Q Consensus 136 a~G~~p~~ 143 (358)
|.|..+..
T Consensus 162 AdG~~S~v 169 (392)
T PRK09126 162 ADSRFSAT 169 (392)
T ss_pred eCCCCchh
Confidence 99987765
No 143
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.37 E-value=4.8e-06 Score=80.78 Aligned_cols=98 Identities=19% Similarity=0.327 Sum_probs=73.0
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------c--cCC-------------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R--LFT------------------------------- 82 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------~--~~~------------------------------- 82 (358)
+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-. + .+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 489999999999999999999999999999853200 0 000
Q ss_pred -------------------------HHHHHHHHHHHHhCC-CEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEe
Q 018320 83 -------------------------PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 136 (358)
Q Consensus 83 -------------------------~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a 136 (358)
.++.+.+.+.+.+.| ++++.+++|++++.+++ . ..+.+.+|+++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~-~~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD-H-VELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-e-eEEEECCCCEEEeeEEEEe
Confidence 012233344455666 99999999999986433 3 3577888989999999999
Q ss_pred eCCCCC
Q 018320 137 IGIRPN 142 (358)
Q Consensus 137 ~G~~p~ 142 (358)
.|..+.
T Consensus 159 dG~~S~ 164 (385)
T TIGR01988 159 DGANSK 164 (385)
T ss_pred CCCCCH
Confidence 997654
No 144
>PRK06116 glutathione reductase; Validated
Probab=98.37 E-value=1.9e-06 Score=85.82 Aligned_cols=95 Identities=23% Similarity=0.408 Sum_probs=66.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------------------------------------CC-HH
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------------------FT-PK 84 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------------------------------------~~-~~ 84 (358)
-.++|||||+.|+.+|..|+++|.+|+|+++. .+.... ++ ..
T Consensus 5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (450)
T PRK06116 5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAK 83 (450)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHH
Confidence 47999999999999999999999999999975 221000 00 00
Q ss_pred -----------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhh
Q 018320 85 -----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL 145 (358)
Q Consensus 85 -----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l 145 (358)
+.+.+.+.+.+.||+++.++ ++.++ .. .+++ +|+++.+|.+|+|||.+|....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~---~~---~v~~-~g~~~~~d~lViATGs~p~~p~ 147 (450)
T PRK06116 84 LIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVD---AH---TVEV-NGERYTADHILIATGGRPSIPD 147 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc---CC---EEEE-CCEEEEeCEEEEecCCCCCCCC
Confidence 11223344667899999874 44442 22 3444 6778999999999999987543
No 145
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.37 E-value=2.8e-06 Score=80.90 Aligned_cols=102 Identities=25% Similarity=0.378 Sum_probs=72.7
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc---------------------------------------c---
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------------------------------------L--- 80 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~---------------------------------------~--- 80 (358)
+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+. .
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 6999999999999999999999999999996543100 0
Q ss_pred -------------C-------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-CC--cEEecC
Q 018320 81 -------------F-------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTD 131 (358)
Q Consensus 81 -------------~-------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D 131 (358)
+ -.++.+.+.+.+++.|++++.+++++.++.+.++....+... +| +++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 0 024556667777788999999999999987555532233333 34 368999
Q ss_pred eEEEeeCCCCChh
Q 018320 132 MVVVGIGIRPNTS 144 (358)
Q Consensus 132 ~vi~a~G~~p~~~ 144 (358)
+||-|-|.++...
T Consensus 163 lvVgADG~~S~vR 175 (356)
T PF01494_consen 163 LVVGADGAHSKVR 175 (356)
T ss_dssp EEEE-SGTT-HHH
T ss_pred eeecccCcccchh
Confidence 9999999887543
No 146
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.36 E-value=1.1e-06 Score=93.00 Aligned_cols=94 Identities=22% Similarity=0.283 Sum_probs=70.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Cc-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
.+++|+|||||+.|+.+|..|++.|.+|+++++.+.+. |. -++.++.....+.+++.||+|++++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence 47899999999999999999999999999999865432 11 13455666666778889999999875411
Q ss_pred cCCCcEEEEEcCCCcEEecCeEEEeeCC-CCCh
Q 018320 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT 143 (358)
Q Consensus 112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~-~p~~ 143 (358)
.+.+.+.....+|.||+|+|. .|..
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 233344445679999999998 4654
No 147
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.36 E-value=3.4e-06 Score=83.79 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=64.7
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC----------ccC---------C-HHH-----------HHHHH
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------RLF---------T-PKI-----------ASYYE 90 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~----------~~~---------~-~~~-----------~~~~~ 90 (358)
-+++|||||+.|+++|..|+++|.+|+|+++.+.++. ... + +++ .....
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNY 83 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999998753211 100 0 111 11122
Q ss_pred HHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-CcEEecCeEEEeeCCCCChh
Q 018320 91 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 91 ~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~vi~a~G~~p~~~ 144 (358)
+.+.+.||+++.++. ..+ ++..+ .+...+ ..++.+|.||+|||.+|+..
T Consensus 84 ~~~~~~gV~~~~g~~-~~~---~~~~v-~v~~~~~~~~~~~d~vViATGs~~~~p 133 (438)
T PRK07251 84 AMLAGSGVDLYDAEA-HFV---SNKVI-EVQAGDEKIELTAETIVINTGAVSNVL 133 (438)
T ss_pred HHHHhCCCEEEEEEE-EEc---cCCEE-EEeeCCCcEEEEcCEEEEeCCCCCCCC
Confidence 446678999987653 222 22222 233222 34799999999999998654
No 148
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.36 E-value=1.3e-06 Score=87.42 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=66.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHh--CCCcEEEEeeCCcccCcc---------CCHHHHHHHHHHHHhCCCEEEcCCeeeE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVI--NKINVTMVFPEAHCMARL---------FTPKIASYYEEYYKSKGVKFVKGTVLSS 108 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~--~g~~Vtlv~~~~~~l~~~---------~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 108 (358)
.+++|+|||+|+.|+.+|..|++ .|++|+|+++.+.+.... ....+...+.+.+.+.+|+++.+..+-.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46899999999999999999987 799999999998764210 1122334455667778999998765411
Q ss_pred EEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 109 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 109 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
.+.+.+-. ..+|.||+|+|..+.
T Consensus 105 ----------dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 105 ----------DVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred ----------cccHHHHh-hhCCEEEEecCCCCC
Confidence 13333322 469999999998763
No 149
>PRK06753 hypothetical protein; Provisional
Probab=98.36 E-value=2.8e-06 Score=82.35 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=71.2
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----cCCHHH---------------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----LFTPKI--------------------------------- 85 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----~~~~~~--------------------------------- 85 (358)
+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+... .+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6999999999999999999999999999987643110 000000
Q ss_pred ---------------HHHHHHHHHh--CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320 86 ---------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 86 ---------------~~~~~~~l~~--~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 143 (358)
...+.+.|.+ .+.++++++++++++.+ ++. ..+.+.+|+++.+|+||-|-|.++.+
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDK-VTIHFADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCc-EEEEECCCCEEecCEEEECCCcchHH
Confidence 1112333322 24678999999999864 333 45778899999999999999977654
No 150
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.36 E-value=1.2e-06 Score=88.03 Aligned_cols=90 Identities=24% Similarity=0.353 Sum_probs=69.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Cc-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
.+++++|||+|++|+++|..|++.|.+|+++++.+++. +. .++.++.....+.+++.||++++++.+.. +
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c-
Confidence 35799999999999999999999999999999887652 21 14556666667788899999999987631 1
Q ss_pred cCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR 140 (358)
Q Consensus 112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 140 (358)
+. .+.....+|.|++|+|..
T Consensus 220 --------~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 --------IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred --------cC-HHHHHhhCCEEEEccCCC
Confidence 00 011235799999999987
No 151
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.34 E-value=1.7e-06 Score=92.77 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=66.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEc
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 112 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~ 112 (358)
+++|+|||||+.|+.+|..|++.|.+|||+++.+.+... .++.+......+.+.+.||++++++.. .
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-d---- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP-D---- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc-c----
Confidence 579999999999999999999999999999987654221 123445555556778889999987421 0
Q ss_pred CCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 113 SNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 113 ~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
+.+.+.+...+|.|++|+|..+.
T Consensus 612 -------~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 612 -------LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred -------eEhhhhhcccccEEEECCCCCCC
Confidence 11223344668999999998753
No 152
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.34 E-value=6.7e-06 Score=80.84 Aligned_cols=101 Identities=18% Similarity=0.350 Sum_probs=70.9
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc----Cc--cCC--------------------------------
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----AR--LFT-------------------------------- 82 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l----~~--~~~-------------------------------- 82 (358)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+- +. .+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 4589999999999999999999999999999865321 00 000
Q ss_pred -----------------------HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCC-C--cEEecCeEEE
Q 018320 83 -----------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRD-G--NRLPTDMVVV 135 (358)
Q Consensus 83 -----------------------~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g--~~i~~D~vi~ 135 (358)
..+.+.+.+.+.+ .+|++++++++++++.++++ ..+.+.+ + .++.+|+||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--ATVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--eEEEEccCCcceEEeeeEEEE
Confidence 1112223333444 37999999999999764443 3355543 2 4699999999
Q ss_pred eeCCCCCh
Q 018320 136 GIGIRPNT 143 (358)
Q Consensus 136 a~G~~p~~ 143 (358)
|.|..+..
T Consensus 176 ADG~~S~v 183 (415)
T PRK07364 176 ADGARSPI 183 (415)
T ss_pred eCCCCchh
Confidence 99987654
No 153
>PRK08013 oxidoreductase; Provisional
Probab=98.33 E-value=6.4e-06 Score=80.81 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=73.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC--------c--cCCH----------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------R--LFTP---------------------------- 83 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~--------~--~~~~---------------------------- 83 (358)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. + .+.+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 4799999999999999999999999999998654110 0 0000
Q ss_pred ----------------------------HHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEE
Q 018320 84 ----------------------------KIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 134 (358)
Q Consensus 84 ----------------------------~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi 134 (358)
.+.+.+.+.+.+. ||+++.++++++++.++++ ..+.+.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV 161 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence 1112233334443 7999999999999764444 45677889999999999
Q ss_pred EeeCCCCCh
Q 018320 135 VGIGIRPNT 143 (358)
Q Consensus 135 ~a~G~~p~~ 143 (358)
-|-|.++..
T Consensus 162 gADG~~S~v 170 (400)
T PRK08013 162 GADGANSWL 170 (400)
T ss_pred EeCCCCcHH
Confidence 999987654
No 154
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.32 E-value=5.7e-06 Score=80.68 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=72.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc--cc---C---c--cCCH-------------H--------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--CM---A---R--LFTP-------------K-------------- 84 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~--~l---~---~--~~~~-------------~-------------- 84 (358)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+. +. + + .+.+ .
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 4799999999999999999999999999997641 00 0 0 0000 0
Q ss_pred ----------------------------HHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEE
Q 018320 85 ----------------------------IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 135 (358)
Q Consensus 85 ----------------------------~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~ 135 (358)
+...+.+.+.+ .|++++.++++++++.++++ ..+.+.+|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence 00011122222 47999999999999875444 457888999999999999
Q ss_pred eeCCCCChh
Q 018320 136 GIGIRPNTS 144 (358)
Q Consensus 136 a~G~~p~~~ 144 (358)
|.|..+..-
T Consensus 162 ADG~~S~vR 170 (384)
T PRK08849 162 ADGANSQVR 170 (384)
T ss_pred ecCCCchhH
Confidence 999887653
No 155
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.32 E-value=1.4e-05 Score=79.55 Aligned_cols=138 Identities=24% Similarity=0.309 Sum_probs=91.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeCCcccCc-----------------------cC--------CHHHHHH
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMAR-----------------------LF--------TPKIASY 88 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~~~~l~~-----------------------~~--------~~~~~~~ 88 (358)
..+|+|||||+.|+-+|..|.+.|.. +.++|+.+.+... .+ -+++..+
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 46899999999999999999999999 9999997533100 01 0226777
Q ss_pred HHHHHHhCCCE--EEcCCeeeEEEEcCCCcEEEEEcCCCcE--EecCeEEEeeCC--CCChhhhhcccccccCcEEEe--
Q 018320 89 YEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGI--RPNTSLFEGQLTLEKGGIKVT-- 160 (358)
Q Consensus 89 ~~~~l~~~gV~--v~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~vi~a~G~--~p~~~l~~~~~~~~~g~i~vd-- 160 (358)
+...+++.++. +..++.|+.+..++++....|.++++.+ +.+|.||+|+|. .|+..-+..... -.|.+.-.
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~-f~g~~~HS~~ 166 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDE-FKGRILHSAD 166 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccC-CCceEEchhc
Confidence 88888877654 4455666667666676677788888765 459999999995 344332222111 12222211
Q ss_pred --ccccCCCCcEEEEcccccc
Q 018320 161 --GRLQSSNSSVYAVGDVAAF 179 (358)
Q Consensus 161 --~~~~t~~~~VyAiGD~~~~ 179 (358)
+...-.-++|-+||--++.
T Consensus 167 ~~~~~~~~GKrV~VIG~GaSA 187 (443)
T COG2072 167 WPNPEDLRGKRVLVIGAGASA 187 (443)
T ss_pred CCCccccCCCeEEEECCCccH
Confidence 1223356789999976653
No 156
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.31 E-value=8.8e-06 Score=81.52 Aligned_cols=100 Identities=24% Similarity=0.348 Sum_probs=67.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc--------ccCc---------------------c--------CCH-
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------CMAR---------------------L--------FTP- 83 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~--------~l~~---------------------~--------~~~- 83 (358)
++++|||+|+.|+++|..++++|.+|+++++.+- ..|. . +|.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP 81 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence 5799999999999999999999999999998640 0000 0 000
Q ss_pred H-----------HHHHHHHHHHhCCCEEEcCCeeeEEEE-cCCCcEEEEEcCCCc--EEecCeEEEeeCCCCCh
Q 018320 84 K-----------IASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 84 ~-----------~~~~~~~~l~~~gV~v~~~~~v~~i~~-~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~ 143 (358)
. +.+.+.+.+++.||+++.+.. +.++. .++.. ..+.+.+|+ ++.+|.||+|||.+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~~~-v~V~~~~g~~~~~~~d~lViATGs~p~~ 153 (466)
T PRK07845 82 AVNARVKALAAAQSADIRARLEREGVRVIAGRG-RLIDPGLGPHR-VKVTTADGGEETLDADVVLIATGASPRI 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEeecccCCCE-EEEEeCCCceEEEecCEEEEcCCCCCCC
Confidence 0 122344567778999998743 33221 02222 346666775 79999999999999863
No 157
>PRK07190 hypothetical protein; Provisional
Probab=98.30 E-value=7.6e-06 Score=82.39 Aligned_cols=99 Identities=19% Similarity=0.370 Sum_probs=74.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC----------------------------------------cc-
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------------------------RL- 80 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~----------------------------------------~~- 80 (358)
..|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. ..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4799999999999999999999999999998643210 00
Q ss_pred ---------CC------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320 81 ---------FT------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 139 (358)
Q Consensus 81 ---------~~------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~ 139 (358)
++ ..+...+.+.+++.|++++.++++++++.++++ ..+.+.+|+++.++.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CLTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eEEEECCCcEEEeCEEEECCCC
Confidence 00 012233445667789999999999999875554 2345577889999999999998
Q ss_pred CCC
Q 018320 140 RPN 142 (358)
Q Consensus 140 ~p~ 142 (358)
++.
T Consensus 164 ~S~ 166 (487)
T PRK07190 164 RSF 166 (487)
T ss_pred CHH
Confidence 653
No 158
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.30 E-value=1.8e-06 Score=93.77 Aligned_cols=94 Identities=22% Similarity=0.254 Sum_probs=69.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------c-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
++++|+|||||+.|+.+|..|+++|.+|||+++.+.+.. . .++.++.....+.+++.||++++++.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg---- 504 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG---- 504 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC----
Confidence 358999999999999999999999999999998765522 1 1356777777888999999999986541
Q ss_pred cCCCcEEEEEcCCC-cEEecCeEEEeeCCC-CCh
Q 018320 112 DSNGKVVAVNLRDG-NRLPTDMVVVGIGIR-PNT 143 (358)
Q Consensus 112 ~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~-p~~ 143 (358)
. .+.+.+- +...+|.||+|||.. |..
T Consensus 505 -~-----~~~~~~l~~~~~yDaViIATGa~~pr~ 532 (1006)
T PRK12775 505 -K-----TFTVPQLMNDKGFDAVFLGVGAGAPTF 532 (1006)
T ss_pred -C-----ccCHHHHhhccCCCEEEEecCCCCCCC
Confidence 1 1111111 124589999999984 543
No 159
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.30 E-value=6.1e-06 Score=82.06 Aligned_cols=98 Identities=15% Similarity=0.246 Sum_probs=65.2
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-Ccc-----CCH-----------HH----------HHHH----H
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-ARL-----FTP-----------KI----------ASYY----E 90 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-~~~-----~~~-----------~~----------~~~~----~ 90 (358)
-+++|||||+.|+.+|..|+++|.+|+|+++.+..+ ... .+. +. .+.+ .
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNF 83 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Confidence 479999999999999999999999999999875321 100 000 00 0111 1
Q ss_pred HHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc-EEecCeEEEeeCCCCChh
Q 018320 91 EYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 91 ~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~~p~~~ 144 (358)
+.+.+ .||+++.+ ++..++ .+. ..+...++. ++.+|.+|+|||.+|...
T Consensus 84 ~~~~~~~gv~~~~g-~~~~i~---~~~-~~v~~~~g~~~~~~d~lviATGs~p~~p 134 (441)
T PRK08010 84 HNLADMPNIDVIDG-QAEFIN---NHS-LRVHRPEGNLEIHGEKIFINTGAQTVVP 134 (441)
T ss_pred HHHhhcCCcEEEEE-EEEEec---CCE-EEEEeCCCeEEEEeCEEEEcCCCcCCCC
Confidence 22333 48998876 344443 222 345556664 699999999999988654
No 160
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.30 E-value=6.7e-06 Score=82.18 Aligned_cols=98 Identities=22% Similarity=0.263 Sum_probs=67.8
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----CC------------------------------H-H-
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FT------------------------------P-K- 84 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----~~------------------------------~-~- 84 (358)
.+++|||||+.|+.+|..|+++|.+|+++++.+.+.... .+ . +
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL 85 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence 579999999999999999999999999999865432110 00 0 0
Q ss_pred ----------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCChh
Q 018320 85 ----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 85 ----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~ 144 (358)
..+.+.+.+++.||+++.+. +..++ .+. ..+...+|+ ++.+|.||+|||.+|...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~---~~~-~~v~~~~g~~~~~~~d~lviATGs~p~~p 152 (461)
T PRK05249 86 LARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD---PHT-VEVECPDGEVETLTADKIVIATGSRPYRP 152 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec---CCE-EEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence 11223345667899999774 33332 222 345555664 799999999999998643
No 161
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.29 E-value=7e-06 Score=82.36 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=68.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------cCC-HH
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFT-PK 84 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~-~~ 84 (358)
..+++|||||+.|+.+|..|+++|.+|+|+++.. +... .++ +.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK 82 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence 4589999999999999999999999999999852 2100 001 00
Q ss_pred -----------HHHHHHHHHHhCCCEEEcCCeeeEEEEc---CCCcEEEEEcCCC--cEEecCeEEEeeCCCCCh
Q 018320 85 -----------IASYYEEYYKSKGVKFVKGTVLSSFDVD---SNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 85 -----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~---~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~ 143 (358)
+.+.+.+.+++.||+++.+. ++.++.. ++.....+.+.+| +++.+|.+|+|||.+|..
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ 156 (472)
T PRK05976 83 VQERKDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVE 156 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCC
Confidence 11122344567799999874 4445321 0111245666676 579999999999999863
No 162
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.28 E-value=2.1e-06 Score=86.06 Aligned_cols=90 Identities=19% Similarity=0.269 Sum_probs=68.0
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .++.++.....+.+.+.||++++++.+.. +
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~- 219 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D- 219 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence 3579999999999999999999999999999998765321 13556666666778899999999976531 0
Q ss_pred cCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR 140 (358)
Q Consensus 112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 140 (358)
+.. +.....+|.|++|+|..
T Consensus 220 --------~~~-~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 220 --------ITA-EELLAEYDAVFLGTGAY 239 (471)
T ss_pred --------CCH-HHHHhhCCEEEEecCCC
Confidence 000 11235799999999987
No 163
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.27 E-value=9e-06 Score=79.33 Aligned_cols=101 Identities=18% Similarity=0.301 Sum_probs=73.9
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------------------------C---cc------------
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------------------------A---RL------------ 80 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------------------------~---~~------------ 80 (358)
..+|+|||||+.|+-+|..|++.|.+|+++|+.+..- . ..
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 3589999999999999999999999999999864100 0 00
Q ss_pred ----------CC---------------HHHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEE
Q 018320 81 ----------FT---------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 134 (358)
Q Consensus 81 ----------~~---------------~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi 134 (358)
++ ..+.+.+.+.+.+. |++++.++++++++.++++ ..+.+.+|+++.+|.||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI 162 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVI 162 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEE
Confidence 00 01223334444555 9999999999999764443 35677788899999999
Q ss_pred EeeCCCCCh
Q 018320 135 VGIGIRPNT 143 (358)
Q Consensus 135 ~a~G~~p~~ 143 (358)
.|.|..+..
T Consensus 163 ~AdG~~S~v 171 (391)
T PRK08020 163 GADGANSQV 171 (391)
T ss_pred EeCCCCchh
Confidence 999987753
No 164
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.27 E-value=1e-05 Score=78.82 Aligned_cols=97 Identities=20% Similarity=0.296 Sum_probs=70.8
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------c----------------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------L---------------------------------- 80 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------~---------------------------------- 80 (358)
+|+|||||+.|+.+|..|++.|.+|+|+++.+.+... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 4899999999999999999999999999976532100 0
Q ss_pred -C-CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320 81 -F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 141 (358)
Q Consensus 81 -~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 141 (358)
+ ..++.+.+.+.+.+.|++++ ..+++.++.++ +....+.+.+|+++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 01223444555667799887 55788887532 333457777888999999999999876
No 165
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.26 E-value=2.4e-06 Score=88.82 Aligned_cols=92 Identities=20% Similarity=0.302 Sum_probs=70.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc--------CccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l--------~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
.+++|+|||+|++|+.+|..|++.|++|+++++.+.+. +..++.++.+...+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 47899999999999999999999999999999987642 1125667666667788999999999986521
Q ss_pred cCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
+ +.+.+ ....+|.|++++|..+.
T Consensus 386 --~-----~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 --D-----ITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence 1 11211 23468999999998643
No 166
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.26 E-value=9.4e-06 Score=78.92 Aligned_cols=98 Identities=14% Similarity=0.250 Sum_probs=71.1
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC----cccC--c--cCC--------------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA----HCMA--R--LFT-------------------------------- 82 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~----~~l~--~--~~~-------------------------------- 82 (358)
+|+|||||+.|+-+|..|++.|.+|+|+|+.+ .+.+ + .+.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 69999999999999999999999999999752 1000 0 000
Q ss_pred ---------------------HHHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320 83 ---------------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 140 (358)
Q Consensus 83 ---------------------~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 140 (358)
.++.+.+.+.+.+. +++++.+++++++..++++ ..+.+.++ ++.+|+||.|-|.+
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence 12233344445554 4899999999999764443 34677666 89999999999987
Q ss_pred CCh
Q 018320 141 PNT 143 (358)
Q Consensus 141 p~~ 143 (358)
+..
T Consensus 160 S~v 162 (374)
T PRK06617 160 SKV 162 (374)
T ss_pred chh
Confidence 665
No 167
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=98.26 E-value=4.1e-06 Score=84.24 Aligned_cols=82 Identities=26% Similarity=0.262 Sum_probs=65.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
++++++|||+|.+|+++|..|.++|.+|+++++.+. +....+.+.|++.||+++++..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence 478999999999999999999999999999987542 233445667888999999875432
Q ss_pred EEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320 120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE 147 (358)
Q Consensus 120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 147 (358)
....+|+||+++|..|+.+++.
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~~~~~~ 96 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPDAPLLA 96 (480)
T ss_pred ------ccCCCCEEEECCCcCCCCHHHH
Confidence 1245899999999999998754
No 168
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.26 E-value=1.3e-05 Score=81.84 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=73.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------------
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------- 79 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------------- 79 (358)
..+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.+.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 468999999999999999999999999999986532100
Q ss_pred ---cCC-----------------HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcC--CC--cEEecCeEE
Q 018320 80 ---LFT-----------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVV 134 (358)
Q Consensus 80 ---~~~-----------------~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~vi 134 (358)
.++ +++.+.+.+.+.+ .|++++.++++++++.++++. .+++. +| +++.+|.||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v--~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGV--TVTLTDADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeE--EEEEEcCCCCEEEEEEEEEE
Confidence 000 1122333444444 489999999999998755552 34443 56 479999999
Q ss_pred EeeCCCCCh
Q 018320 135 VGIGIRPNT 143 (358)
Q Consensus 135 ~a~G~~p~~ 143 (358)
-|.|.++..
T Consensus 168 gADG~~S~v 176 (538)
T PRK06183 168 GCDGANSFV 176 (538)
T ss_pred ecCCCchhH
Confidence 999987655
No 169
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.26 E-value=1.2e-05 Score=82.18 Aligned_cols=103 Identities=18% Similarity=0.290 Sum_probs=73.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc----------------------------------c------
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------L------ 80 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------~------ 80 (358)
..+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+... .
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 358999999999999999999999999999986532100 0
Q ss_pred -------------------C-CHHHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCc-EEecCeEEEeeC
Q 018320 81 -------------------F-TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIG 138 (358)
Q Consensus 81 -------------------~-~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G 138 (358)
+ ...+...+.+.+.+. ++++++++++++++.++++....++..++. ++.+|.||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 0 011223344445443 799999999999987555433334444554 699999999999
Q ss_pred CCCCh
Q 018320 139 IRPNT 143 (358)
Q Consensus 139 ~~p~~ 143 (358)
.++..
T Consensus 183 ~~S~v 187 (547)
T PRK08132 183 ARSPL 187 (547)
T ss_pred CCcHH
Confidence 87764
No 170
>PLN02697 lycopene epsilon cyclase
Probab=98.25 E-value=1e-05 Score=81.89 Aligned_cols=98 Identities=21% Similarity=0.288 Sum_probs=71.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----------------------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------------------------------- 80 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~----------------------------------------- 80 (358)
-+|+|||||+.|+.+|..|++.|.+|.++++...+....
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 479999999999999999999999999998753221110
Q ss_pred CC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320 81 FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 141 (358)
Q Consensus 81 ~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 141 (358)
++ ..+.+.+.+.+.+.|+++ .+++|++++.++++ +..+.+.+|.++.++.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 00 112244455556779998 56789999764333 3334567888999999999999876
No 171
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.25 E-value=1.1e-05 Score=80.94 Aligned_cols=96 Identities=20% Similarity=0.186 Sum_probs=65.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----C------------------------------C-HHH
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----F------------------------------T-PKI 85 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----~------------------------------~-~~~ 85 (358)
.+++|||||+.|+.+|..++++|.+|+|+++.+.+.... + | +.+
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDKM 84 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence 579999999999999999999999999999865432110 0 0 011
Q ss_pred H-----------HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCC
Q 018320 86 A-----------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 86 ~-----------~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~ 142 (358)
. ..+...+++.||+++.+.. .-+ +... ..+...+| .++.+|.+|+|||.+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a-~~~---~~~~-v~v~~~~g~~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 85 RARKEKVVKQLTGGLAGMAKGRKVTVVNGLG-KFT---GGNT-LEVTGEDGKTTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEc---cCCE-EEEecCCCceEEEEcCEEEEeCCCCCC
Confidence 1 1112345667999997642 222 2222 34555566 47999999999999986
No 172
>PRK10015 oxidoreductase; Provisional
Probab=98.24 E-value=1.4e-05 Score=79.29 Aligned_cols=98 Identities=17% Similarity=0.323 Sum_probs=71.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc------------------Ccc-----------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------ARL----------------------- 80 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l------------------~~~----------------------- 80 (358)
-.|+|||||+.|+-+|..|++.|.+|+++|+.+.+. +.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 479999999999999999999999999999865321 100
Q ss_pred --CC------------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320 81 --FT------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 140 (358)
Q Consensus 81 --~~------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 140 (358)
++ ..+-..+.+..++.|++++.+++|+.+.. +++.+..+.. ++.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 00 01122345556678999999999999875 3455544443 45679999999999975
Q ss_pred C
Q 018320 141 P 141 (358)
Q Consensus 141 p 141 (358)
+
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 4
No 173
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.24 E-value=1.4e-05 Score=78.51 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=72.5
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC-Cccc------Cc--cCCH----------------------------
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCM------AR--LFTP---------------------------- 83 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~-~~~l------~~--~~~~---------------------------- 83 (358)
..+|+|||||+.|+-+|..|++.|.+|+|+|+. +... .+ .+.+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 358999999999999999999999999999985 2100 00 0000
Q ss_pred ----------------------------HHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEE
Q 018320 84 ----------------------------KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 134 (358)
Q Consensus 84 ----------------------------~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi 134 (358)
.+...+.+.+.+ .||+++.++++++++.++++ ..+.+.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence 011222333333 47999999999999764443 45778899999999999
Q ss_pred EeeCCCCCh
Q 018320 135 VGIGIRPNT 143 (358)
Q Consensus 135 ~a~G~~p~~ 143 (358)
.|.|..+..
T Consensus 162 gADG~~S~v 170 (405)
T PRK08850 162 GADGANSWL 170 (405)
T ss_pred EeCCCCChh
Confidence 999976644
No 174
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.23 E-value=1.4e-05 Score=78.49 Aligned_cols=100 Identities=15% Similarity=0.268 Sum_probs=70.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------ 79 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------ 79 (358)
++|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 68999999999999999999999999999986532000
Q ss_pred -cCC--------------------HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEc---CCCcEEecCeEE
Q 018320 80 -LFT--------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVV 134 (358)
Q Consensus 80 -~~~--------------------~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~vi 134 (358)
.+. .++.+.+.+.+.+ .++++++++++++++.++++ ..+++ .+++++.+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeCCCCcEEecCEEE
Confidence 000 0112223333433 47999999999999864333 23433 344679999999
Q ss_pred EeeCCCCCh
Q 018320 135 VGIGIRPNT 143 (358)
Q Consensus 135 ~a~G~~p~~ 143 (358)
-|-|.++..
T Consensus 161 gADG~~S~v 169 (400)
T PRK06475 161 ACDGVWSML 169 (400)
T ss_pred ECCCccHhH
Confidence 999977544
No 175
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.23 E-value=1.1e-05 Score=80.70 Aligned_cols=96 Identities=22% Similarity=0.289 Sum_probs=65.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------cCC-HHH
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFT-PKI 85 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~-~~~ 85 (358)
-+++|||||+.|+.+|..++++|.+|+|+++.+ +... .++ .++
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKV 83 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHH
Confidence 479999999999999999999999999999864 2110 001 111
Q ss_pred HHH-----------HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-CcEEecCeEEEeeCCCCCh
Q 018320 86 ASY-----------YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 86 ~~~-----------~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~vi~a~G~~p~~ 143 (358)
.++ +...+++.||+++.++ ++.++ ... ..+...+ ++++.+|.||+|||.+|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~---~~~-~~v~~~~~~~~~~~d~lViAtGs~p~~ 148 (462)
T PRK06416 84 QEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLVD---PNT-VRVMTEDGEQTYTAKNIILATGSRPRE 148 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc---CCE-EEEecCCCcEEEEeCEEEEeCCCCCCC
Confidence 111 3345667899999874 33332 222 2344333 4679999999999999863
No 176
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.21 E-value=1.4e-05 Score=78.31 Aligned_cols=100 Identities=20% Similarity=0.320 Sum_probs=75.0
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----------------CC----------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------FT---------------------- 82 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----------------~~---------------------- 82 (358)
-.|+|||+|+.|+.+|..|++.|.+|.++|+.+.+..+. ..
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 479999999999999999999999999999965441110 01
Q ss_pred -----------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 83 -----------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 83 -----------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
...-+.+.+..++.|++++.++++..+..++++.+..+. .++.++.++.||.|.|.+..
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVR-AGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEE-cCCEEEEcCEEEECCCcchH
Confidence 112234555667789999999999999886656544443 34478999999999997644
No 177
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.20 E-value=1.1e-05 Score=80.59 Aligned_cols=94 Identities=20% Similarity=0.388 Sum_probs=66.2
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------------------------------------CC-H-
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------------------FT-P- 83 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------------------------------------~~-~- 83 (358)
-.++|||||+.|+.+|..++++|.+|+|+|+.. +.... ++ +
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPE 81 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHH
Confidence 479999999999999999999999999999842 11100 01 0
Q ss_pred ----------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 84 ----------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 84 ----------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
.+.+.+...+++.||+++.++.. +. ++.. +.. +++++.+|.+|+|||.+|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~--~~--~~~~---v~v-~~~~~~~d~vIiAtGs~p~~p 144 (450)
T TIGR01421 82 LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR--FT--KDGT---VEV-NGRDYTAPHILIATGGKPSFP 144 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE--Ec--cCCE---EEE-CCEEEEeCEEEEecCCCCCCC
Confidence 11223445677789999988643 22 2332 333 567899999999999998654
No 178
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.19 E-value=2.2e-05 Score=76.55 Aligned_cols=100 Identities=25% Similarity=0.282 Sum_probs=71.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------------
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------- 79 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------------- 79 (358)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 357999999999999999999999999999986432000
Q ss_pred ------cCC---------------HHHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEee
Q 018320 80 ------LFT---------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 137 (358)
Q Consensus 80 ------~~~---------------~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~ 137 (358)
.++ ..+.+.+.+.+.+. ++. +.+++|++++.++++ ..+++++|+++.+|.||.|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~Ad 163 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLADGTTLSARLVVGAD 163 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEECCCCEEEEeEEEEec
Confidence 000 11223334445554 466 779999999764443 34777888899999999999
Q ss_pred CCCCCh
Q 018320 138 GIRPNT 143 (358)
Q Consensus 138 G~~p~~ 143 (358)
|..+..
T Consensus 164 G~~S~v 169 (388)
T PRK07494 164 GRNSPV 169 (388)
T ss_pred CCCchh
Confidence 987643
No 179
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.19 E-value=1.6e-05 Score=81.16 Aligned_cols=96 Identities=21% Similarity=0.272 Sum_probs=69.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC-ccc--C---c------------------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA-HCM--A---R------------------------------------ 79 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~-~~l--~---~------------------------------------ 79 (358)
-.|+|||||+.|+++|..+++.|.+|.++++.. .+. + .
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 479999999999999999999999999999863 110 0 0
Q ss_pred -----------cCCHH-HHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320 80 -----------LFTPK-IASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 139 (358)
Q Consensus 80 -----------~~~~~-~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~ 139 (358)
.+|.. ....+.+.+.+. |++++ ...++++.. +++.+..|.+.+|..+.|+.||+|+|.
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 00100 123333444444 88886 556788765 466777888899999999999999994
No 180
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.19 E-value=3.5e-05 Score=76.25 Aligned_cols=138 Identities=21% Similarity=0.208 Sum_probs=90.9
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc----------------------------------------Ccc
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------------------ARL 80 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l----------------------------------------~~~ 80 (358)
.++++|||+|++||-.|..|.+.|.+|+++||.+.+. ++.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 6899999999999999999999999999999976441 000
Q ss_pred -CC-HHHHHHHHHHHHhCCC--EEEcCCeeeEEEEcCCCcEEEEEcCCC----cEEecCeEEEeeCCC--CChhhhhcc-
Q 018320 81 -FT-PKIASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMVVVGIGIR--PNTSLFEGQ- 149 (358)
Q Consensus 81 -~~-~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~vi~a~G~~--p~~~l~~~~- 149 (358)
.+ .++.++++.+.+..++ .+.+++.+.+++...+|+- .|.+.+. ++.-+|.|++|+|.. |+.......
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW-RVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCce-eEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence 01 1466677777776665 6777888888876443432 3444332 367799999999976 666554432
Q ss_pred ccc-ccCcEEEeccccC---CCCcEEEEcccccc
Q 018320 150 LTL-EKGGIKVTGRLQS---SNSSVYAVGDVAAF 179 (358)
Q Consensus 150 ~~~-~~g~i~vd~~~~t---~~~~VyAiGD~~~~ 179 (358)
++. .+..|-.-++-.. ....|.+||--.+.
T Consensus 165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG 198 (448)
T KOG1399|consen 165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSG 198 (448)
T ss_pred hhhcCCcceehhhccCcccccCceEEEECCCccH
Confidence 222 3222322222211 35789999966554
No 181
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.18 E-value=7.4e-06 Score=81.34 Aligned_cols=92 Identities=12% Similarity=0.158 Sum_probs=61.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHH-HhCCCcEEEEeeCCcccCcc------CCH---HHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320 40 SGGNAVVIGGGYIGMECAASL-VINKINVTMVFPEAHCMARL------FTP---KIASYYEEYYKSKGVKFVKGTVLSSF 109 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L-~~~g~~Vtlv~~~~~~l~~~------~~~---~~~~~~~~~l~~~gV~v~~~~~v~~i 109 (358)
.+++|+|||+|+.|+.+|..| ++.|++|+|+++.+.+..-. ..+ .+...+...+...+++++.+..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 478999999999999999975 46799999999998764210 112 3344445556667888885443311
Q ss_pred EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
.+...+ -.-.+|.||+|+|..+.
T Consensus 117 ---------Dvt~ee-L~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ---------DLKMEE-LRNHYNCVIFCCGASEV 139 (506)
T ss_pred ---------ccCHHH-HHhcCCEEEEEcCCCCC
Confidence 111111 12368999999998754
No 182
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.16 E-value=5.4e-06 Score=86.49 Aligned_cols=91 Identities=22% Similarity=0.332 Sum_probs=67.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Cc-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
.+++|+|||+|++|+.+|..|++.|.+|+++++.+.+. +. .++.++.....+.+++.||++++++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 46899999999999999999999999999999876642 11 13556666666778889999999986521
Q ss_pred cCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 141 (358)
Q Consensus 112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 141 (358)
+ +.+.+ ....+|.|++++|..+
T Consensus 403 --~-----i~~~~-~~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 --D-----ISLES-LLEDYDAVFVGVGTYR 424 (654)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCC
Confidence 0 11111 1236999999999754
No 183
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.16 E-value=2.1e-05 Score=85.66 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=71.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc---------C-CHHHHHHHHHHHHhC-CCEEEcCCeeeEE
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL---------F-TPKIASYYEEYYKSK-GVKFVKGTVLSSF 109 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~---------~-~~~~~~~~~~~l~~~-gV~v~~~~~v~~i 109 (358)
.++|+|||||+.|+.+|..+++.|.+|+|+++.+.+.... . ..+....+.+.+++. +|+++++++|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 4689999999999999999999999999999876553211 1 123334455566655 5999999999887
Q ss_pred EEcCCCcEEEEE-cC-------CC------cEEecCeEEEeeCCCCChh
Q 018320 110 DVDSNGKVVAVN-LR-------DG------NRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 110 ~~~~~g~v~~v~-~~-------~g------~~i~~D~vi~a~G~~p~~~ 144 (358)
.. ++.+..+. .. ++ .++.+|.||+|||.+|...
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~ 289 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL 289 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence 52 22222111 00 11 2689999999999887643
No 184
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.15 E-value=7.9e-06 Score=80.24 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=32.7
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
+|+|||||.+|+|+|..|+++|.+|+|+++.+..+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 699999999999999999999999999998776533
No 185
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.15 E-value=1.2e-05 Score=79.13 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=69.5
Q ss_pred cEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcccCcc----CCH-------------HH-------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMARL----FTP-------------KI------------------- 85 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~l~~~----~~~-------------~~------------------- 85 (358)
+|+|||||+.|+-+|..|++.| .+|+|+|+.+.+.+.. +.+ .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 5999999976531100 000 00
Q ss_pred ----------------------HHHHHHHHHh--CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320 86 ----------------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 141 (358)
Q Consensus 86 ----------------------~~~~~~~l~~--~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 141 (358)
...+.+.|.+ .++.++.+++|++++.++++ ..+.+.+|+++.+|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 1112222322 14567889999999874444 467788999999999999999765
Q ss_pred C
Q 018320 142 N 142 (358)
Q Consensus 142 ~ 142 (358)
.
T Consensus 160 ~ 160 (414)
T TIGR03219 160 A 160 (414)
T ss_pred H
Confidence 4
No 186
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.15 E-value=6.4e-06 Score=85.85 Aligned_cols=92 Identities=22% Similarity=0.302 Sum_probs=68.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc-------Cc-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
.+++|+|||+|++|+.+|..|++.|.+||++++.+.+. +. .++.++.+...+.+.+.|+++++++.+. .+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d- 269 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD- 269 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence 46799999999999999999999999999999887641 21 1355666666677888999999887541 11
Q ss_pred cCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
+.+.+. ...+|.||+|+|..+.
T Consensus 270 --------v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 270 --------ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred --------cCHHHH-HhhcCEEEEEcCCCCC
Confidence 112111 2359999999998753
No 187
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.14 E-value=2e-05 Score=79.02 Aligned_cols=96 Identities=26% Similarity=0.371 Sum_probs=63.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----CCH-----------------------------HHH-
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FTP-----------------------------KIA- 86 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----~~~-----------------------------~~~- 86 (358)
-+++|||+|+.|+.+|..+++.|.+|+|+++.+.+.... .+. ++.
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 83 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQ 83 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHH
Confidence 479999999999999999999999999999743322110 000 000
Q ss_pred -------------HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCC
Q 018320 87 -------------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPN 142 (358)
Q Consensus 87 -------------~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~ 142 (358)
..+...+++.||+++.+. .++. ++.++ .+...+|+ ++.+|.+|+|||.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--a~~~--~~~~v-~v~~~~g~~~~~~~d~lVIATGs~p~ 149 (466)
T PRK06115 84 MMKQKDESVEALTKGVEFLFRKNKVDWIKGW--GRLD--GVGKV-VVKAEDGSETQLEAKDIVIATGSEPT 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE--EEEc--cCCEE-EEEcCCCceEEEEeCEEEEeCCCCCC
Confidence 112223445678777664 2443 23332 35555664 6999999999999985
No 188
>PRK06185 hypothetical protein; Provisional
Probab=98.12 E-value=4e-05 Score=75.20 Aligned_cols=101 Identities=21% Similarity=0.327 Sum_probs=71.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------------
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------- 79 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------------- 79 (358)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 468999999999999999999999999999986421000
Q ss_pred ---c--C--------------CHHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEE--EEcCCCc-EEecCeEEEe
Q 018320 80 ---L--F--------------TPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVA--VNLRDGN-RLPTDMVVVG 136 (358)
Q Consensus 80 ---~--~--------------~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~--v~~~~g~-~i~~D~vi~a 136 (358)
. + ...+.+.+.+.+.+ .|++++.++++++++.+ ++.+.. +...+|+ ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 0 0 01122333344444 48999999999999863 444433 3345664 7999999999
Q ss_pred eCCCCC
Q 018320 137 IGIRPN 142 (358)
Q Consensus 137 ~G~~p~ 142 (358)
.|....
T Consensus 165 dG~~S~ 170 (407)
T PRK06185 165 DGRHSR 170 (407)
T ss_pred CCCchH
Confidence 997754
No 189
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.12 E-value=2.5e-05 Score=76.78 Aligned_cols=94 Identities=19% Similarity=0.335 Sum_probs=69.4
Q ss_pred EEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc----------------------C---------------------
Q 018320 45 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------------F--------------------- 81 (358)
Q Consensus 45 vVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~----------------------~--------------------- 81 (358)
+|||||+.|+-+|..+++.|.+|+|+|+.+.+..+. .
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 589999999999999999999999999865432100 0
Q ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeC
Q 018320 82 -----------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138 (358)
Q Consensus 82 -----------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G 138 (358)
..++.+.+.+.+++.|+++++++.+++++.+ ++. ..+++ ++.++.+|.||+|+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~VIlAtG 157 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADKVILATG 157 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCEEEECCC
Confidence 0122334455667789999999999999763 332 34555 566899999999999
Q ss_pred CCC
Q 018320 139 IRP 141 (358)
Q Consensus 139 ~~p 141 (358)
..+
T Consensus 158 ~~s 160 (400)
T TIGR00275 158 GLS 160 (400)
T ss_pred Ccc
Confidence 754
No 190
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.10 E-value=4.2e-05 Score=74.85 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=71.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc--Cc----------------------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--AR---------------------------------------- 79 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l--~~---------------------------------------- 79 (358)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+... ..
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 579999999999999999999999999999876310 00
Q ss_pred ----cC-------------CHHHHHHHHHHHHhCCCEEEcCCeeeEEEE-cCCCcEEEEEc-CCCc--EEecCeEEEeeC
Q 018320 80 ----LF-------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNL-RDGN--RLPTDMVVVGIG 138 (358)
Q Consensus 80 ----~~-------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-~~~g~v~~v~~-~~g~--~i~~D~vi~a~G 138 (358)
.+ .+++.+.+.+...+.|+++++++++++++. ++++ ..+.+ .+|+ ++.+|+||-|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~~V~~~~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR--PYVTYEKDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--eEEEEEcCCeEEEEEeCEEEECCC
Confidence 00 012223333444567999999999999875 2333 34555 4664 689999999999
Q ss_pred CCCCh
Q 018320 139 IRPNT 143 (358)
Q Consensus 139 ~~p~~ 143 (358)
.+...
T Consensus 161 ~~S~v 165 (392)
T PRK08243 161 FHGVS 165 (392)
T ss_pred CCCch
Confidence 87654
No 191
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.09 E-value=3.8e-05 Score=74.87 Aligned_cols=99 Identities=18% Similarity=0.270 Sum_probs=71.1
Q ss_pred CcEEEEcCcHHHHHHHHHHHhC---CCcEEEEeeCC-c--ccCc------cCC---------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVIN---KINVTMVFPEA-H--CMAR------LFT--------------------------- 82 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~---g~~Vtlv~~~~-~--~l~~------~~~--------------------------- 82 (358)
-+|+|||||+.|+-+|..|++. |.+|+|+|+.. . ..+. .+.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4799999999999999999998 99999999841 1 0000 000
Q ss_pred ----------------------------HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeE
Q 018320 83 ----------------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 133 (358)
Q Consensus 83 ----------------------------~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~v 133 (358)
.++.+.+.+.+.+ .|++++.++++++++.++++ ..+.+.+|.++.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~v 161 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTLDDGETLTGRLL 161 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 0112233334444 47999999999999763333 3477778888999999
Q ss_pred EEeeCCCCC
Q 018320 134 VVGIGIRPN 142 (358)
Q Consensus 134 i~a~G~~p~ 142 (358)
|.|.|..+.
T Consensus 162 I~AdG~~S~ 170 (395)
T PRK05732 162 VAADGSHSA 170 (395)
T ss_pred EEecCCChh
Confidence 999998764
No 192
>PRK06370 mercuric reductase; Validated
Probab=98.08 E-value=1.5e-05 Score=79.79 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=64.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------cCCH-H
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFTP-K 84 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------~~~~-~ 84 (358)
.+++|||+|+.|+.+|..++++|.+|+|+++.+ +... .++- +
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFKA 84 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHHH
Confidence 589999999999999999999999999999852 1000 0111 1
Q ss_pred HH-----------HHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 85 IA-----------SYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 85 ~~-----------~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
+. ..+...+++. ||+++.++.+. + +.. .++. +++++.+|.+|+|||.+|...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~-~---~~~---~v~v-~~~~~~~d~lViATGs~p~~p 148 (463)
T PRK06370 85 VMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF-E---SPN---TVRV-GGETLRAKRIFINTGARAAIP 148 (463)
T ss_pred HHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE-c---cCC---EEEE-CcEEEEeCEEEEcCCCCCCCC
Confidence 11 2233455666 99999886541 1 222 2333 466899999999999998754
No 193
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.07 E-value=3.5e-06 Score=83.47 Aligned_cols=96 Identities=19% Similarity=0.318 Sum_probs=27.7
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-------------------------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------- 79 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------- 79 (358)
.|||||||+.|+-+|..+++.|.+|.|||+.+.+...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 4899999999999999999999999999997654100
Q ss_pred -----cCCHHH-HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC---CcEEecCeEEEeeCC
Q 018320 80 -----LFTPKI-ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GNRLPTDMVVVGIGI 139 (358)
Q Consensus 80 -----~~~~~~-~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g~~i~~D~vi~a~G~ 139 (358)
.++++. ...+.+.+++.||++++++.+.++.. +++++..|.+.+ ..++.++.+|=|+|.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 122222 22344566678999999999999987 456777887765 467999999999993
No 194
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.07 E-value=4.7e-05 Score=75.66 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=73.1
Q ss_pred cEEEEcCcHHHHHHHHHHHh----CCCcEEEEeeCC--ccc------------Cc-------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVI----NKINVTMVFPEA--HCM------------AR------------------------- 79 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~----~g~~Vtlv~~~~--~~l------------~~------------------------- 79 (358)
+|+|||||++|+-+|..|++ .|.+|+|+|+.+ ... ++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 59999999999999999998 799999999832 210 00
Q ss_pred ------------------cCC--------------HHHHHHHHHHHHhC---CCEEEcCCeeeEEEEc-----CCCcEEE
Q 018320 80 ------------------LFT--------------PKIASYYEEYYKSK---GVKFVKGTVLSSFDVD-----SNGKVVA 119 (358)
Q Consensus 80 ------------------~~~--------------~~~~~~~~~~l~~~---gV~v~~~~~v~~i~~~-----~~g~v~~ 119 (358)
.++ ..+...+.+.+.+. +++++.++++++++.+ +++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 000 11223344455555 4999999999999641 1222356
Q ss_pred EEcCCCcEEecCeEEEeeCCCCChh
Q 018320 120 VNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 120 v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
+++.+|+++.+|+||-|-|.++..-
T Consensus 162 v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred EEEcCCCEEEeeEEEEecCCCChhH
Confidence 7888999999999999999876653
No 195
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.05 E-value=3e-05 Score=77.63 Aligned_cols=94 Identities=20% Similarity=0.278 Sum_probs=63.8
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc----------------------------------CC------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------------------------FT------ 82 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~----------------------------------~~------ 82 (358)
.++|||+|+.|+.+|..++++|.+|+|+++.+ +.... ++
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLE 80 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHH
Confidence 58999999999999999999999999999853 21110 00
Q ss_pred --HHHHHH-----HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-cEEecCeEEEeeCCCCChh
Q 018320 83 --PKIASY-----YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 83 --~~~~~~-----~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~ 144 (358)
.++... +.+.+++.||+++.++. ..+ +.. .+.+.+| +.+.+|.+|+|||.+|...
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~-~~~---~~~---~v~v~~g~~~~~~~~lIiATGs~p~~p 143 (463)
T TIGR02053 81 GKREVVEELRHEKYEDVLSSYGVDYLRGRA-RFK---DPK---TVKVDLGREVRGAKRFLIATGARPAIP 143 (463)
T ss_pred HHHHHHHHHhhhhHHHHHHhCCcEEEEEEE-EEc---cCC---EEEEcCCeEEEEeCEEEEcCCCCCCCC
Confidence 011111 23456778999987643 222 222 3445555 3688999999999998754
No 196
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.05 E-value=5.2e-05 Score=74.19 Aligned_cols=50 Identities=16% Similarity=0.321 Sum_probs=37.3
Q ss_pred HHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 90 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 90 ~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
.+.+++.|++++.++.|++++.++ +.+ .+.+.+| ++.+|.||+|+|..+.
T Consensus 156 ~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 156 AELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcchH
Confidence 344456799999999999997633 333 4666666 7999999999997653
No 197
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.05 E-value=7.4e-05 Score=75.67 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=77.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------------------------------------cCCH
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------LFTP 83 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------------------------------------~~~~ 83 (358)
-.|||||+|..|+-+|..+++.|.+|+|+|+.+.+... ..++
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d~ 141 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTNDK 141 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 47999999999999999999999999999986532100 0001
Q ss_pred -------------------------------------------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCC
Q 018320 84 -------------------------------------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSN 114 (358)
Q Consensus 84 -------------------------------------------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~ 114 (358)
.+...+.+.+++.||++++++.++++.. ++
T Consensus 142 ~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~ 220 (506)
T PRK06481 142 ALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITE-KD 220 (506)
T ss_pred HHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cC
Confidence 1223445556678999999999999976 45
Q ss_pred CcEEEEEc--CCC--cEEecCeEEEeeC-CCCChhhhhc
Q 018320 115 GKVVAVNL--RDG--NRLPTDMVVVGIG-IRPNTSLFEG 148 (358)
Q Consensus 115 g~v~~v~~--~~g--~~i~~D~vi~a~G-~~p~~~l~~~ 148 (358)
+++..+.. .++ .++.++.||+|+| +.+|.+++..
T Consensus 221 g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 221 GKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred CEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 76655554 333 3588999999998 7777777654
No 198
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.04 E-value=5.8e-05 Score=74.00 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcE-EecCeEEEeeCCCCC
Q 018320 86 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPN 142 (358)
Q Consensus 86 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~-i~~D~vi~a~G~~p~ 142 (358)
...+.+.+.++|++++++++|+.|+..++| +..+.+.+|++ ++|+.||.|.|....
T Consensus 156 t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 156 TRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH
Confidence 444566777889999999999999986665 55677788876 999999999997544
No 199
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.04 E-value=7.5e-05 Score=74.17 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=75.4
Q ss_pred cEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcccCc--------------------------------------cCC-
Q 018320 43 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMAR--------------------------------------LFT- 82 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~l~~--------------------------------------~~~- 82 (358)
.|||||+|..|+-+|..+++.| .+|+|+|+.+..... ..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 4899999999999999999999 999999986432100 001
Q ss_pred -------------------------------------------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcC
Q 018320 83 -------------------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDS 113 (358)
Q Consensus 83 -------------------------------------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~ 113 (358)
.++...+.+.+++.|+++++++.++++..++
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~ 160 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD 160 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECC
Confidence 1123344455667899999999999998755
Q ss_pred CCcEEEEEcC--CCc--EEecCeEEEeeC-CCCChhhhh
Q 018320 114 NGKVVAVNLR--DGN--RLPTDMVVVGIG-IRPNTSLFE 147 (358)
Q Consensus 114 ~g~v~~v~~~--~g~--~i~~D~vi~a~G-~~p~~~l~~ 147 (358)
++++..++.. +++ .+.++.||+|+| ...|.++.+
T Consensus 161 ~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 161 QGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA 199 (439)
T ss_pred CCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence 6666655543 343 478999999999 555666554
No 200
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=98.01 E-value=0.00011 Score=55.86 Aligned_cols=73 Identities=25% Similarity=0.342 Sum_probs=58.1
Q ss_pred eEEEEecCceEEEeeccc--ceEEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcccHHHHh
Q 018320 221 FFYSRVFTLSWQFYGDNV--GEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELE 295 (358)
Q Consensus 221 ~~~~~~~~~~~~~~G~~~--~~~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~ 295 (358)
+||+.+|+.+++++|... .+.+..|+.+..+|..++.++|+++|+..+|. +.++..+..+|+.+..++ ...|.
T Consensus 1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~vn~-~~~~~~~rrli~~~~~~~-~~~l~ 75 (85)
T PF14759_consen 1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVSVNR-PRDLRAARRLIAAGARVD-PARLA 75 (85)
T ss_dssp EEEEEETTEEEEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B---HHHHH
T ss_pred CeecccCCCeEEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEecCC-HHHHHHHHHHHHCCCCcC-HHHhc
Confidence 689999999999999754 46778888777779889999999999999994 778888899999998775 45554
No 201
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.01 E-value=7e-05 Score=76.36 Aligned_cols=98 Identities=15% Similarity=0.264 Sum_probs=71.1
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc------------------Cc-------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------AR------------------------- 79 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l------------------~~------------------------- 79 (358)
.|+|||+|++|+++|..+++.|.+|+++++..... ..
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 58999999999999999999999999999753110 00
Q ss_pred ----------cCCH-HHHHHHHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320 80 ----------LFTP-KIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 141 (358)
Q Consensus 80 ----------~~~~-~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 141 (358)
.+|. .....+.+.+++. +++++.+ .++++..++++.+..|.+.+|..+.||.||+|+|.-.
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 0011 1123444556655 7888755 6667654336677889999999999999999999764
No 202
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.00 E-value=2.9e-05 Score=75.52 Aligned_cols=94 Identities=18% Similarity=0.305 Sum_probs=64.9
Q ss_pred cEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCc--------cCCHHHHH-------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR--------LFTPKIAS------------------------- 87 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~--------~~~~~~~~------------------------- 87 (358)
.++|||||+.|+.+|..|++. |.+|.++++.+.+.+. .+++....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 489999999999999999987 9999999998744321 01111111
Q ss_pred ---------HHHHH-HHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 88 ---------YYEEY-YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 88 ---------~~~~~-l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
.+.+. +++.+..++++++|++++ .++ +.+.+|+++.+|.||.|.|.++.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~--~~~----v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLD--ADG----VDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEe--CCE----EEECCCCEEEeeEEEECCCCCCC
Confidence 11122 222244477788888884 332 44578999999999999998764
No 203
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.00 E-value=2.3e-05 Score=76.32 Aligned_cols=99 Identities=22% Similarity=0.357 Sum_probs=76.2
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCcccC------cc---CCHHHHHHHHHHHHhCCCEEEcCCeeeEE
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMA------RL---FTPKIASYYEEYYKSKGVKFVKGTVLSSF 109 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~~l~------~~---~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 109 (358)
.++++|||+|+.|.-+++.+.+.|. +++++.++..+.. .. ..........+.+++.||++++++.|+++
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~ 153 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA 153 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEe
Confidence 5799999999999999999999876 6788776543211 10 12233444456789999999999999999
Q ss_pred EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320 110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 143 (358)
+- .+ ..+.+.+|+.+++|.+++|||..|++
T Consensus 154 D~-~~---K~l~~~~Ge~~kys~LilATGs~~~~ 183 (478)
T KOG1336|consen 154 DL-AS---KTLVLGNGETLKYSKLIIATGSSAKT 183 (478)
T ss_pred ec-cc---cEEEeCCCceeecceEEEeecCcccc
Confidence 75 22 36788999999999999999996654
No 204
>PRK07538 hypothetical protein; Provisional
Probab=98.00 E-value=5.9e-05 Score=74.27 Aligned_cols=101 Identities=18% Similarity=0.207 Sum_probs=68.2
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----------------CC-----------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------FT----------------------- 82 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----------------~~----------------------- 82 (358)
+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+.. +.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 69999999999999999999999999999875431100 00
Q ss_pred --------------------HHHHHHHHHHHHh-CC-CEEEcCCeeeEEEEcCCCcEEEEEcC-C--CcEEecCeEEEee
Q 018320 83 --------------------PKIASYYEEYYKS-KG-VKFVKGTVLSSFDVDSNGKVVAVNLR-D--GNRLPTDMVVVGI 137 (358)
Q Consensus 83 --------------------~~~~~~~~~~l~~-~g-V~v~~~~~v~~i~~~~~g~v~~v~~~-~--g~~i~~D~vi~a~ 137 (358)
.++.+.+.+.+.+ .| +++++++++++++.++++.+..+... + ++++.+|+||-|-
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgAD 161 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGAD 161 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECC
Confidence 0111222333333 35 57999999999987555533222221 1 2489999999999
Q ss_pred CCCCCh
Q 018320 138 GIRPNT 143 (358)
Q Consensus 138 G~~p~~ 143 (358)
|.++..
T Consensus 162 G~~S~v 167 (413)
T PRK07538 162 GIHSAV 167 (413)
T ss_pred CCCHHH
Confidence 976543
No 205
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.99 E-value=0.00019 Score=70.33 Aligned_cols=145 Identities=17% Similarity=0.208 Sum_probs=99.2
Q ss_pred HHHHHHHh-CCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecC
Q 018320 55 ECAASLVI-NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTD 131 (358)
Q Consensus 55 e~A~~L~~-~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D 131 (358)
++-..|.+ .|+.|.-+--. -|......+.+.+.+.+++.|++++.+++|.+++. +++++..+.+.++ .++.+|
T Consensus 237 ~~~~~L~~~~g~~v~E~ptl---PPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD 312 (419)
T TIGR03378 237 ELLRELEQATGLTLCELPTM---PPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRAD 312 (419)
T ss_pred HHHHHHHHHHCCCEEeCCCC---CCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECC
Confidence 33344443 47777665332 23345678888899999999999999999999886 4555666666665 479999
Q ss_pred eEEEeeCCC-CChhhhh------c-----cc-------cc-----------ccCcEEEeccccC-----CCCcEEEEccc
Q 018320 132 MVVVGIGIR-PNTSLFE------G-----QL-------TL-----------EKGGIKVTGRLQS-----SNSSVYAVGDV 176 (358)
Q Consensus 132 ~vi~a~G~~-p~~~l~~------~-----~~-------~~-----------~~g~i~vd~~~~t-----~~~~VyAiGD~ 176 (358)
.+|+|+|.- +. .+.. + .+ .+ ..-+|.+|+++|. ..+|+||+|-+
T Consensus 313 ~vVLAaGaw~S~-gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~v 391 (419)
T TIGR03378 313 HFVLASGSFFSN-GLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAV 391 (419)
T ss_pred EEEEccCCCcCH-HHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechh
Confidence 999999976 32 2111 0 01 00 1235889999983 37899999999
Q ss_pred ccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320 177 AAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208 (358)
Q Consensus 177 ~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 208 (358)
....+++... .-...|+..|..||++|+
T Consensus 392 L~G~d~~~~g----cG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 392 LGGYDPIFEG----CGSGVAVSTALHAAEQII 419 (419)
T ss_pred hcCCChHhcC----CCchhHHHHHHHHHHhhC
Confidence 9988764311 123467888888988873
No 206
>PRK06996 hypothetical protein; Provisional
Probab=97.99 E-value=5.9e-05 Score=73.95 Aligned_cols=98 Identities=15% Similarity=0.243 Sum_probs=72.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCC----CcEEEEeeCCcccC----c---------------------------------
Q 018320 41 GGNAVVIGGGYIGMECAASLVINK----INVTMVFPEAHCMA----R--------------------------------- 79 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g----~~Vtlv~~~~~~l~----~--------------------------------- 79 (358)
..+|+|||||+.|+-+|..|++.| .+|+++|+.+..-+ +
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 468999999999999999999987 47999998531100 0
Q ss_pred -c-------------------C-CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC---cEEecCeEEE
Q 018320 80 -L-------------------F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVV 135 (358)
Q Consensus 80 -~-------------------~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~ 135 (358)
. + -.++.+.+.+.+++.|++++.++++++++.++++ ..+.+.++ +++.+|+||-
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIg 168 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQ 168 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEE
Confidence 0 0 0234555667777889999999999999764444 34666654 5899999999
Q ss_pred eeCCC
Q 018320 136 GIGIR 140 (358)
Q Consensus 136 a~G~~ 140 (358)
|.|..
T Consensus 169 ADG~~ 173 (398)
T PRK06996 169 AEGGL 173 (398)
T ss_pred CCCCC
Confidence 99964
No 207
>PRK14694 putative mercuric reductase; Provisional
Probab=97.99 E-value=6.8e-05 Score=75.21 Aligned_cols=100 Identities=21% Similarity=0.288 Sum_probs=66.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc--------------------------ccC---cc------CCH-H
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------------------------CMA---RL------FTP-K 84 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~--------------------------~l~---~~------~~~-~ 84 (358)
.-+++|||||+.|+.+|..|++.|.+|+++++..- -.+ .. ++. +
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRSA 85 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHHH
Confidence 45899999999999999999999999999997530 000 00 010 1
Q ss_pred HHHH------------HHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCChhh
Q 018320 85 IASY------------YEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSL 145 (358)
Q Consensus 85 ~~~~------------~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~l 145 (358)
+.+. ....+++ .+|+++.+ .++.++. +. ..|.+.+| +++++|.+|+|||.+|....
T Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~--~~--~~V~~~~g~~~~~~~d~lViATGs~p~~p~ 156 (468)
T PRK14694 86 LLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDE--RT--LTVTLNDGGEQTVHFDRAFIGTGARPAEPP 156 (468)
T ss_pred HHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecC--CE--EEEEecCCCeEEEECCEEEEeCCCCCCCCC
Confidence 1111 1112333 37888876 4666642 22 34666666 37999999999999987543
No 208
>PRK13984 putative oxidoreductase; Provisional
Probab=97.99 E-value=1.8e-05 Score=81.92 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=67.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------c-cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
++++++|||+|+.|+.+|..|++.|.+|+++++.+.+.. . .+..++.....+.+++.|++++.++.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 358 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK--- 358 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC---
Confidence 578999999999999999999999999999998775421 1 13455555556778889999999977632
Q ss_pred cCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 141 (358)
Q Consensus 112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 141 (358)
+ +.+.+ ....+|.||+|+|..+
T Consensus 359 --~-----~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 359 --D-----IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred --c-----CCHHH-HHhcCCEEEEEcCcCC
Confidence 0 11111 2357999999999763
No 209
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.98 E-value=6.6e-05 Score=74.93 Aligned_cols=57 Identities=25% Similarity=0.540 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
..+.|.+...++||+++.++ |+.+..+++|.+..|++.+|+++++|.+|=|+|++..
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 34455666778899999874 7777776788888999999999999999999998643
No 210
>PRK11445 putative oxidoreductase; Provisional
Probab=97.98 E-value=0.00011 Score=70.98 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=67.5
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc--C------ccCCHHH-----------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--A------RLFTPKI----------------------------- 85 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l--~------~~~~~~~----------------------------- 85 (358)
+|+|||||+.|+-+|..|++. .+|+++|+.+.+. + ..+.+..
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 699999999999999999999 9999999876321 0 0001000
Q ss_pred ----------------HHHHHHH---HHhCCCEEEcCCeeeEEEEcCCCcEEEEEc-CCCc--EEecCeEEEeeCCCCCh
Q 018320 86 ----------------ASYYEEY---YKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 86 ----------------~~~~~~~---l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~vi~a~G~~p~~ 143 (358)
+..+.+. ..+.|++++.++.+++++.++++ ..+.+ .+|+ ++.+|.||.|.|..+..
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~~g~~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDG--YHVIFRADGWEQHITARYLVGADGANSMV 159 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE--EEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence 1111122 23468999999999999864444 23443 4564 68999999999987543
No 211
>PRK06126 hypothetical protein; Provisional
Probab=97.98 E-value=9.2e-05 Score=75.67 Aligned_cols=103 Identities=20% Similarity=0.296 Sum_probs=70.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc-----------------------------------------
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------- 79 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~----------------------------------------- 79 (358)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 468999999999999999999999999999986422000
Q ss_pred -------------c----------------------CC-HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEEc
Q 018320 80 -------------L----------------------FT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNL 122 (358)
Q Consensus 80 -------------~----------------------~~-~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~~ 122 (358)
. ++ ..+...+.+.+++ .|+++++++++++++.++++....+..
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~ 166 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED 166 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence 0 00 0012233333433 489999999999998754442222221
Q ss_pred -CCCc--EEecCeEEEeeCCCCCh
Q 018320 123 -RDGN--RLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 123 -~~g~--~i~~D~vi~a~G~~p~~ 143 (358)
.+|+ ++.+|.||.|.|.++..
T Consensus 167 ~~~g~~~~i~ad~vVgADG~~S~V 190 (545)
T PRK06126 167 LDGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred CCCCcEEEEEEEEEEecCCcchHH
Confidence 3453 68999999999987643
No 212
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.97 E-value=2.2e-05 Score=80.62 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=66.0
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC--------ccCCHHHHHHHHHHHHhCCCEEEcCCee-eEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------RLFTPKIASYYEEYYKSKGVKFVKGTVL-SSFD 110 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~--------~~~~~~~~~~~~~~l~~~gV~v~~~~~v-~~i~ 110 (358)
.+++|+|||+|++|+.+|..|++.|.+|+++++.+.+.. ..++.+....-.+.+++.|++++.++.+ ..+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 578999999999999999999999999999998765421 0134445555556677899999988765 3221
Q ss_pred EcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 111 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 111 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
. . .....+|.|++|+|..+.
T Consensus 216 ~-----------~-~~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 216 L-----------E-QLEGEFDAVFVAIGAQLG 235 (564)
T ss_pred H-----------H-HHHhhCCEEEEeeCCCCC
Confidence 1 0 011248999999997653
No 213
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=4.2e-05 Score=71.67 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=97.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEe-e-CCccc-----------CccCCHHHHHHHHHHHHhCCCEEEcCCee
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVF-P-EAHCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVL 106 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~-~-~~~~l-----------~~~~~~~~~~~~~~~l~~~gV~v~~~~~v 106 (358)
.+-.|+|||||+.|...|.+.++.|.+.-++. | +.+++ +..-.|+++..+++..++..|+++...+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra 289 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA 289 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence 46689999999999999999999998876652 2 12222 12246889999999999999999988888
Q ss_pred eEEEEc-CCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcccccccCcEEEeccccC---CCCcEEEEccccc
Q 018320 107 SSFDVD-SNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQS---SNSSVYAVGDVAA 178 (358)
Q Consensus 107 ~~i~~~-~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i~vd~~~~t---~~~~VyAiGD~~~ 178 (358)
+++++. ..+.+..+++.+|-.+++..+|++||.+=..--....-+..+.++..-.|+.. ..++|-+||--.+
T Consensus 290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNS 365 (520)
T COG3634 290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNS 365 (520)
T ss_pred hcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcc
Confidence 888762 33556789999999999999999999663221111111223445555444443 3467777775443
No 214
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.96 E-value=0.0001 Score=65.22 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=67.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------C-------------------------------CH
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------F-------------------------------TP 83 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------~-------------------------------~~ 83 (358)
...|+|||+|+.|+.+|..|++.|.+|.++|+...+.... | ..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 4689999999999999999999999999999975442110 0 01
Q ss_pred HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-----------CCcEEecCeEEEeeCCCCCh
Q 018320 84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~ 143 (358)
+....+.....+.|+++...+.++.+--.+++++..+... |.-.+.+..||=+||.....
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 2223333334458999999999998754344677766553 33479999999999976554
No 215
>PLN02546 glutathione reductase
Probab=97.96 E-value=5.6e-05 Score=77.26 Aligned_cols=94 Identities=17% Similarity=0.270 Sum_probs=64.7
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC---------Cccc------------------------------C-----
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPE---------AHCM------------------------------A----- 78 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~---------~~~l------------------------------~----- 78 (358)
.++|||+|+.|+++|..++++|.+|+|+|+. ..+. .
T Consensus 81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~~~ 160 (558)
T PLN02546 81 DLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKYET 160 (558)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcccCC
Confidence 6999999999999999999999999999951 1100 0
Q ss_pred c-cCC------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 79 R-LFT------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 79 ~-~~~------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
. .+| .++...+.+.|++.||+++.+. .+.++. . .+.. +|+++.+|.||+|||.+|...
T Consensus 161 ~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~-a~~vd~---~---~V~v-~G~~~~~D~LVIATGs~p~~P 231 (558)
T PLN02546 161 EPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGR-GKIVDP---H---TVDV-DGKLYTARNILIAVGGRPFIP 231 (558)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEccC---C---EEEE-CCEEEECCEEEEeCCCCCCCC
Confidence 0 011 0112334456777899999763 334432 2 2333 577899999999999998654
No 216
>PRK13748 putative mercuric reductase; Provisional
Probab=97.96 E-value=0.00012 Score=75.11 Aligned_cols=97 Identities=21% Similarity=0.301 Sum_probs=63.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---------------------------C---cc------CCH-H
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------------A---RL------FTP-K 84 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---------------------------~---~~------~~~-~ 84 (358)
..++|||+|+.|+.+|..+++.|.+|.||++.. +. + .. ++. .
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 177 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSR 177 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHHH
Confidence 589999999999999999999999999999862 10 0 00 011 1
Q ss_pred HHHH------------HHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCChh
Q 018320 85 IASY------------YEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 85 ~~~~------------~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~ 144 (358)
+.+. ....+++. +|+++.+ .+..++ ... ..+.+.+|+ ++.+|.||+|||.+|...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~---~~~-~~v~~~~g~~~~~~~d~lviAtGs~p~~p 247 (561)
T PRK13748 178 LLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKD---DQT-LIVRLNDGGERVVAFDRCLIATGASPAVP 247 (561)
T ss_pred HHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEec---CCE-EEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence 1111 11223443 7888876 333332 222 345555663 699999999999998754
No 217
>PRK09897 hypothetical protein; Provisional
Probab=97.96 E-value=0.00012 Score=74.38 Aligned_cols=99 Identities=11% Similarity=0.155 Sum_probs=66.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCCcccCcc----------------------CCHH-------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL----------------------FTPK------------- 84 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~~~l~~~----------------------~~~~------------- 84 (358)
++|+|||||+.|+-+|..|.+.+. +|+|+++...+.... ..+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 589999999999999999987654 899999864432110 0000
Q ss_pred ------------------------HHHH---HHHHHHhCC--CEEEcCCeeeEEEEcCCCcEEEEEcCC-CcEEecCeEE
Q 018320 85 ------------------------IASY---YEEYYKSKG--VKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVV 134 (358)
Q Consensus 85 ------------------------~~~~---~~~~l~~~g--V~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~vi 134 (358)
+.+. +.+.+.+.| +.++.+++|++++.++++ ..+.+.+ +..+.+|.||
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV 159 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence 1111 122333455 788888899999874433 3466545 4679999999
Q ss_pred EeeCCCCC
Q 018320 135 VGIGIRPN 142 (358)
Q Consensus 135 ~a~G~~p~ 142 (358)
+|+|..+.
T Consensus 160 LAtGh~~p 167 (534)
T PRK09897 160 IATGHVWP 167 (534)
T ss_pred ECCCCCCC
Confidence 99997543
No 218
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.96 E-value=0.00012 Score=71.09 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=29.5
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
+|+|||||.+|+.+|..|+++|.+|+|+++.
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~ 32 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF 32 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5899999999999999999999999999985
No 219
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.96 E-value=4.1e-05 Score=72.56 Aligned_cols=72 Identities=21% Similarity=0.349 Sum_probs=46.7
Q ss_pred cEEecCeEEEeeCCCCChhh----hhc--c-cccccCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHH
Q 018320 126 NRLPTDMVVVGIGIRPNTSL----FEG--Q-LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 198 (358)
Q Consensus 126 ~~i~~D~vi~a~G~~p~~~l----~~~--~-~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~ 198 (358)
.+++|++++.++|+....-. ++. + +...+|.+.+.. -.|++|+.|.|...|. ..+..+++
T Consensus 327 e~~p~~l~i~sIGYks~pv~~gipFd~~kgvv~n~~GrV~~s~----~~pglY~sGW~k~GP~---------GvIattm~ 393 (468)
T KOG1800|consen 327 ETLPCGLLIRSIGYKSVPVDSGIPFDDKKGVVPNVNGRVLVSG----CSPGLYASGWVKHGPT---------GVIATTMQ 393 (468)
T ss_pred EeeccceeEeeeeecccccCCCCCcccccCcccCCCceEEeec----cCCceEEEeeeccCCc---------ceeeehhh
Confidence 57999999999997643211 111 1 122344444211 4699999999998765 34556778
Q ss_pred HHHHHHHHHcCC
Q 018320 199 SAKHAVAAIMEP 210 (358)
Q Consensus 199 ~g~~aa~~i~g~ 210 (358)
++..+++.|+..
T Consensus 394 dAf~v~d~I~qD 405 (468)
T KOG1800|consen 394 DAFEVADTIVQD 405 (468)
T ss_pred hHHHHHHHHHHH
Confidence 888888887643
No 220
>PTZ00058 glutathione reductase; Provisional
Probab=97.95 E-value=9.7e-05 Score=75.55 Aligned_cols=31 Identities=39% Similarity=0.536 Sum_probs=29.7
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.++|||+|+.|+.+|..+++.|.+|.+||+.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 6999999999999999999999999999975
No 221
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.95 E-value=6.6e-05 Score=75.01 Aligned_cols=95 Identities=24% Similarity=0.336 Sum_probs=61.9
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc-----CC-------------------------------HHH-
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FT-------------------------------PKI- 85 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~-----~~-------------------------------~~~- 85 (358)
+++|||||+.|+.+|..|++.|.+|+++++ +.+.... .+ +.+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKMQ 81 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHHH
Confidence 699999999999999999999999999998 4331110 00 000
Q ss_pred ----------HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-cEEecCeEEEeeCCCCCh
Q 018320 86 ----------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 86 ----------~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~ 143 (358)
...+...+++.||+++.+.. ..+ +... ..+...+| .++.+|.+|+|||.+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~---~~~~-~~v~~~~g~~~~~~d~lVlAtG~~p~~ 145 (461)
T TIGR01350 82 KRKNKVVKKLVGGVKGLLKKNKVTVIKGEA-KFL---DPGT-VLVTGENGEETLTAKNIIIATGSRPRS 145 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEc---cCCE-EEEecCCCcEEEEeCEEEEcCCCCCCC
Confidence 01112234456778776543 222 2222 23444444 479999999999998864
No 222
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.94 E-value=0.0001 Score=71.94 Aligned_cols=98 Identities=22% Similarity=0.412 Sum_probs=67.0
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC-Ccc--------------c------------------Cc----------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPE-AHC--------------M------------------AR---------- 79 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~-~~~--------------l------------------~~---------- 79 (358)
+|+|||||+.|+-+|..|++.|.+|+++|+. +.. + +.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5999999999999999999999999999986 211 0 00
Q ss_pred ---c---CCH-HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC------C--cEEecCeEEEeeCCCCCh
Q 018320 80 ---L---FTP-KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD------G--NRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 80 ---~---~~~-~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~------g--~~i~~D~vi~a~G~~p~~ 143 (358)
. ++. .+-+.+.+...+.|++++.+ .++++..++++ ..+.+.+ + .++.+|.||.|.|.++..
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 0 000 12233445556679999865 68888764433 2344432 2 479999999999976543
No 223
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.94 E-value=0.00012 Score=73.63 Aligned_cols=31 Identities=26% Similarity=0.211 Sum_probs=29.7
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEee
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFP 72 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~ 72 (358)
-.++|||||+.|+.+|..+++.|.+|.++++
T Consensus 5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred eeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 4799999999999999999999999999997
No 224
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.93 E-value=8.8e-05 Score=72.19 Aligned_cols=97 Identities=20% Similarity=0.299 Sum_probs=70.0
Q ss_pred cEEEEcCcHHHHHHHHHH--HhCCCcEEEEeeCCcc--cCc----c----C-----------------------------
Q 018320 43 NAVVIGGGYIGMECAASL--VINKINVTMVFPEAHC--MAR----L----F----------------------------- 81 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L--~~~g~~Vtlv~~~~~~--l~~----~----~----------------------------- 81 (358)
.|+|||+|++|+.+|..| ++.|.+|.+|++.+.. -.. . .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 489999999999999999 8889999999986543 100 0 0
Q ss_pred -----CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 82 -----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 82 -----~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
..++-+.+.+.+.+.|+ +..+++|++|+.+++ ...+.+.+|+++.++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 01233344455554454 566789999986444 34578889999999999999996544
No 225
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.92 E-value=0.00011 Score=71.86 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=69.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc--Cc----cCC---------------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--AR----LFT--------------------------------- 82 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l--~~----~~~--------------------------------- 82 (358)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .. .+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999999999999876310 00 000
Q ss_pred --------------------HHHHHHHHHHHHhCCCEEEcCCeeeEEEE-cCCCcEEEEEcC-CCc--EEecCeEEEeeC
Q 018320 83 --------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLR-DGN--RLPTDMVVVGIG 138 (358)
Q Consensus 83 --------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-~~~g~v~~v~~~-~g~--~i~~D~vi~a~G 138 (358)
+.+...+.+.+.+.|+.++++.+++.+.. ++++ ..|.+. +|+ ++.+|+||-|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~--~~V~~~~~g~~~~i~adlvIGADG 160 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR--PYVTFERDGERHRLDCDFIAGCDG 160 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc--cEEEEEECCeEEEEEeCEEEECCC
Confidence 11123334445566888888888777753 2222 345554 675 689999999999
Q ss_pred CCCCh
Q 018320 139 IRPNT 143 (358)
Q Consensus 139 ~~p~~ 143 (358)
.++..
T Consensus 161 ~~S~V 165 (390)
T TIGR02360 161 FHGVS 165 (390)
T ss_pred Cchhh
Confidence 77644
No 226
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.92 E-value=0.00015 Score=72.49 Aligned_cols=96 Identities=23% Similarity=0.303 Sum_probs=62.8
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc--------cC------------------c----------cCCH-HH
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--------MA------------------R----------LFTP-KI 85 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~--------l~------------------~----------~~~~-~~ 85 (358)
+++|||+|+.|+.+|..+++.|.+|+++++.+.- .| . ..|. .+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 6999999999999999999999999999986321 00 0 0111 11
Q ss_pred H-----------HHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-cEEecCeEEEeeCCCCCh
Q 018320 86 A-----------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 86 ~-----------~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~ 143 (358)
. +.+...+++.+|+++.+. +..+ ++.. ..+...++ +++.+|.+|+|||.+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~---~~~~-v~v~~~~~~~~~~~d~lviATGs~p~~ 146 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFE---TDHR-VRVEYGDKEEVVDAEQFIIAAGSEPTE 146 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc---cCCE-EEEeeCCCcEEEECCEEEEeCCCCCCC
Confidence 1 112234556688887663 2222 2232 24444455 469999999999999864
No 227
>PLN02507 glutathione reductase
Probab=97.90 E-value=0.00013 Score=73.84 Aligned_cols=98 Identities=21% Similarity=0.265 Sum_probs=65.1
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC---------CcccCcc--------------------------------
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE---------AHCMARL-------------------------------- 80 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~---------~~~l~~~-------------------------------- 80 (358)
-.++|||+|+.|+.+|..++++|.+|.|+|+. ..+....
T Consensus 26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~~ 105 (499)
T PLN02507 26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEIN 105 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 36999999999999999999999999999951 1111000
Q ss_pred ----CC-HH-----------HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCC
Q 018320 81 ----FT-PK-----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPN 142 (358)
Q Consensus 81 ----~~-~~-----------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~ 142 (358)
++ .+ +...+++.+.+.||+++.+ .++.++ ... ..+.+.+|+ ++.+|.||+|||.+|.
T Consensus 106 ~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd---~~~-v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 106 EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVG---PNE-VEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEec---CCE-EEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 00 00 0111223455678988876 344443 222 356666775 5889999999999886
Q ss_pred hh
Q 018320 143 TS 144 (358)
Q Consensus 143 ~~ 144 (358)
..
T Consensus 181 ~p 182 (499)
T PLN02507 181 RP 182 (499)
T ss_pred CC
Confidence 54
No 228
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.88 E-value=0.00018 Score=69.57 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=30.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
-+|+|||||.+|+-+|..|+++|.+|+|++++.
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 469999999999999999999999999999853
No 229
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.88 E-value=2.9e-05 Score=82.59 Aligned_cols=35 Identities=26% Similarity=0.174 Sum_probs=32.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
.+|+|+|||+|+.|+++|..|++.|++||++++.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 57899999999999999999999999999999753
No 230
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.87 E-value=1.2e-05 Score=70.89 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=42.5
Q ss_pred CCCCCCccCCCCC-CCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 2 NMALKLEEFGLSG-SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 2 ~~~~~P~~~~ipG-~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
|.--.|+.+.+|| .+. .+++...+.+.. ..++|+|+|||+|.+|+++|..|++.|.+||++.|++.
T Consensus 135 G~~~~p~~p~~~g~~~~-~~~h~~~~~~~~-------~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 135 GHYSHPRIPDIPGSAFR-PIIHSADWRDPE-------DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp -SSCSB---S-TTGGCS-EEEEGGG-STTG-------GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred eccCCCCcccccccccc-ceEehhhcCChh-------hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 3334677777888 444 455544433332 23689999999999999999999999999999999874
No 231
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.86 E-value=0.00021 Score=70.22 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=31.0
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
++|+|||||.+|+.+|..|++.|.+|+|+|+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999865
No 232
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=0.00014 Score=72.98 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=30.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.+++|||||+.|+.+|..++++|.+|+|+++.
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 47999999999999999999999999999975
No 233
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.81 E-value=4.9e-05 Score=80.20 Aligned_cols=90 Identities=20% Similarity=0.286 Sum_probs=69.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
.+++|.|||+|+.|+.+|..|.+.|+.||+.+|++++..- -+|..+.+.-.+.|.+.||+|++++.|-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 4789999999999999999999999999999999887321 146666676677889999999998765221
Q ss_pred cCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR 140 (358)
Q Consensus 112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 140 (358)
+. -|+-.-+.|.|++|+|..
T Consensus 1862 --------vs-~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGST 1881 (2142)
T ss_pred --------cc-HHHHhhccCeEEEEeCCC
Confidence 11 133334579999999965
No 234
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.79 E-value=3.4e-05 Score=76.59 Aligned_cols=90 Identities=22% Similarity=0.237 Sum_probs=68.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc--------cCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 111 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 111 (358)
.+++|+|||+|+.|+.+|..|++.|++||++++.+.+... .++.++.+...+.|++.|++|+.++.+-.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~--- 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR--- 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---
Confidence 4689999999999999999999999999999998765321 14557888888999999999999876531
Q ss_pred cCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320 112 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR 140 (358)
Q Consensus 112 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 140 (358)
+ +++.+ ..-++|.|++++|..
T Consensus 199 --~-----it~~~-L~~e~Dav~l~~G~~ 219 (457)
T COG0493 199 --D-----ITLEE-LLKEYDAVFLATGAG 219 (457)
T ss_pred --c-----CCHHH-HHHhhCEEEEecccc
Confidence 1 11111 123459999999943
No 235
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.78 E-value=0.00033 Score=68.77 Aligned_cols=100 Identities=17% Similarity=0.299 Sum_probs=65.1
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc---c---------------------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---L--------------------------------------- 80 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~---~--------------------------------------- 80 (358)
+|+|||||+.|+.+|..|++.|.+|.++|+.+.+... .
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 6999999999999999999999999999986432000 0
Q ss_pred --------CC-HHHHHHHHHHHHhCCCEEEcCCeeeEEEEc-CCCcEEEEEc--CC-----C--cEEecCeEEEeeCCCC
Q 018320 81 --------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVD-SNGKVVAVNL--RD-----G--NRLPTDMVVVGIGIRP 141 (358)
Q Consensus 81 --------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~g~v~~v~~--~~-----g--~~i~~D~vi~a~G~~p 141 (358)
++ ..+-+.+.+...+.|++++.++ +.+++.. ..+....+++ .+ | .++.++.||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 00 0111224445566799998774 6666421 1122223332 21 3 4789999999999876
Q ss_pred Ch
Q 018320 142 NT 143 (358)
Q Consensus 142 ~~ 143 (358)
..
T Consensus 161 ~v 162 (398)
T TIGR02028 161 RV 162 (398)
T ss_pred HH
Confidence 44
No 236
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.78 E-value=0.00019 Score=75.07 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=30.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
.+|+|||||.+|+.+|..|+++|.+|+|+++..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 489999999999999999999999999999863
No 237
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.77 E-value=5.6e-05 Score=73.70 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=53.5
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------cCCH---H---HHHHHHHHHHhCCCEEEcCCeeeE
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LFTP---K---IASYYEEYYKSKGVKFVKGTVLSS 108 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------~~~~---~---~~~~~~~~l~~~gV~v~~~~~v~~ 108 (358)
.++++|||||..|++.|..|++.|.+|+|+|+.+.+..+ .|+. . ++-.+.+.-...+|++++.++|++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 579999999999999999999999999999999877433 1111 1 112222333446899999999999
Q ss_pred EEE
Q 018320 109 FDV 111 (358)
Q Consensus 109 i~~ 111 (358)
++.
T Consensus 204 v~G 206 (622)
T COG1148 204 VSG 206 (622)
T ss_pred ecc
Confidence 865
No 238
>PRK07121 hypothetical protein; Validated
Probab=97.75 E-value=0.00038 Score=70.26 Aligned_cols=59 Identities=25% Similarity=0.332 Sum_probs=41.3
Q ss_pred HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-Cc--EEec-CeEEEeeCC-CCChhhhh
Q 018320 89 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GN--RLPT-DMVVVGIGI-RPNTSLFE 147 (358)
Q Consensus 89 ~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~--~i~~-D~vi~a~G~-~p~~~l~~ 147 (358)
+.+.+++.|+++++++.++++..++++++..+...+ ++ .+.+ +.||+|+|- ..|.++++
T Consensus 183 L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 183 LAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 344455678999999999998765556777665532 32 4778 999999995 44555554
No 239
>PRK14727 putative mercuric reductase; Provisional
Probab=97.74 E-value=0.00033 Score=70.52 Aligned_cols=100 Identities=18% Similarity=0.292 Sum_probs=65.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---------------------------C--c------cCCHH-
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------------A--R------LFTPK- 84 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---------------------------~--~------~~~~~- 84 (358)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+. + . .++..
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 95 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRGL 95 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHHH
Confidence 4689999999999999999999999999999863210 0 0 01111
Q ss_pred H-------HHH-----HHHHHHhC-CCEEEcCCeeeEEEEcCCCcEEEEEcCCCc--EEecCeEEEeeCCCCChhh
Q 018320 85 I-------ASY-----YEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTSL 145 (358)
Q Consensus 85 ~-------~~~-----~~~~l~~~-gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~l 145 (358)
+ ... +.+.++.. ||+++.+. ..+. +++. ..+.+.+|+ ++.+|.+|+|||.+|....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~--a~f~--~~~~-v~v~~~~g~~~~~~~d~lViATGs~p~~p~ 166 (479)
T PRK14727 96 LLHQQQARVEELRHAKYQSILDGNPALTLLKGY--ARFK--DGNT-LVVRLHDGGERVLAADRCLIATGSTPTIPP 166 (479)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE--EEEe--cCCE-EEEEeCCCceEEEEeCEEEEecCCCCCCCC
Confidence 0 011 12233333 78888664 2332 2332 346666664 6999999999999987543
No 240
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.74 E-value=0.00036 Score=68.66 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC---CCc--EEecCeEEEeeCCCCC
Q 018320 85 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPN 142 (358)
Q Consensus 85 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~ 142 (358)
+...+.+.+++.|+++++++.++++.. +++++..+... +|+ ++.++.||+|+|-...
T Consensus 143 ~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 143 LIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 455667778888999999999999987 56788777765 454 5789999999997655
No 241
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.72 E-value=0.00019 Score=71.72 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=29.7
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEee
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFP 72 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~ 72 (358)
-+++|||||+.|+.+|..|++.|.+|.+|++
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~ 34 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKLGKKVALIEK 34 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 3799999999999999999999999999998
No 242
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.71 E-value=0.00047 Score=67.76 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=30.1
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
+|+|||||.+|+.+|..|++.|.+|+|+++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 69999999999999999999999999999863
No 243
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.70 E-value=0.00042 Score=70.86 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=30.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
-+|+|||||.+|+-+|..|+++|.+|+|+|+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~ 38 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERH 38 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence 47999999999999999999999999999985
No 244
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.70 E-value=0.00032 Score=72.69 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=32.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
+..+|+|||||+.|+-+|..|++.|.+|+|+|+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45789999999999999999999999999999865
No 245
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.70 E-value=0.00052 Score=68.70 Aligned_cols=106 Identities=16% Similarity=0.229 Sum_probs=75.1
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc-c-C------------c-------------------------cCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-M-A------------R-------------------------LFT 82 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~-l-~------------~-------------------------~~~ 82 (358)
-.|||||+|..|+-+|..+++.|.+|+|+|+.+.. . . . ..+
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRTD 84 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCCC
Confidence 47999999999999999999999999999986521 0 0 0 001
Q ss_pred H----------------------------------------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCc
Q 018320 83 P----------------------------------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK 116 (358)
Q Consensus 83 ~----------------------------------------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~ 116 (358)
+ .+...+.+.+++.|++++++++++++.. ++++
T Consensus 85 ~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~ 163 (466)
T PRK08274 85 EALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALEL-DDGR 163 (466)
T ss_pred HHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCe
Confidence 1 1223334455677999999999999986 4677
Q ss_pred EEEEEcC--CC--cEEecCeEEEeeCC-CCChhhhhc
Q 018320 117 VVAVNLR--DG--NRLPTDMVVVGIGI-RPNTSLFEG 148 (358)
Q Consensus 117 v~~v~~~--~g--~~i~~D~vi~a~G~-~p~~~l~~~ 148 (358)
+..+... ++ ..+.++.||+|+|. ..+.+++..
T Consensus 164 v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~~ 200 (466)
T PRK08274 164 FVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLRE 200 (466)
T ss_pred EEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHHh
Confidence 6666552 33 35889999999984 455555553
No 246
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.68 E-value=0.00076 Score=66.19 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=37.8
Q ss_pred HHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320 90 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 140 (358)
Q Consensus 90 ~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 140 (358)
.+.+++.|++++.+++|++++..+++.+..+++.+| ++.++.||+++|..
T Consensus 190 ~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 190 ARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 345567899999999999997534455556777776 69999998887754
No 247
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.65 E-value=0.00067 Score=67.68 Aligned_cols=101 Identities=22% Similarity=0.318 Sum_probs=66.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC------------c-cCCH------------------------
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------------R-LFTP------------------------ 83 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~------------~-~~~~------------------------ 83 (358)
.-+|+|||||+.|+-+|..|++.|.+|+++|+.+.... . .+.+
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 35899999999999999999999999999998642100 0 0000
Q ss_pred --------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcC--CCcEEEEEcC---------CCcEEecCeEEEeeC
Q 018320 84 --------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDS--NGKVVAVNLR---------DGNRLPTDMVVVGIG 138 (358)
Q Consensus 84 --------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--~g~v~~v~~~---------~g~~i~~D~vi~a~G 138 (358)
.+-+.+.+...+.|++++.+ .+++++... ++. ..+.+. ++.++.+|.||-|.|
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~-~~v~~~~~~~~~~~g~~~~v~a~~VIgADG 196 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGP-YVIHYTSYDSGSGAGTPKTLEVDAVIGADG 196 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCc-EEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence 01223444456679999865 466775321 222 233332 235799999999999
Q ss_pred CCCCh
Q 018320 139 IRPNT 143 (358)
Q Consensus 139 ~~p~~ 143 (358)
..+..
T Consensus 197 ~~S~v 201 (450)
T PLN00093 197 ANSRV 201 (450)
T ss_pred cchHH
Confidence 76543
No 248
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.63 E-value=0.00065 Score=68.47 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=63.6
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC--------cccCc-----------------------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA--------HCMAR----------------------------------- 79 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~--------~~l~~----------------------------------- 79 (358)
.++|||+|+.|+.+|..+++.|.+|++|++.. .+...
T Consensus 4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~ 83 (484)
T TIGR01438 4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVEET 83 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccCCC
Confidence 69999999999999999999999999999621 11000
Q ss_pred -cCCH------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC--cEEecCeEEEeeCCCCChh
Q 018320 80 -LFTP------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 80 -~~~~------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~ 144 (358)
.+|- .+.+.....+++.||+++.+.. ++. +... ..+...+| +++.+|.+|+|||.+|...
T Consensus 84 ~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a--~f~--~~~~-v~v~~~~g~~~~~~~d~lVIATGs~p~~p 158 (484)
T TIGR01438 84 VKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA--EFV--DKHR-IKATNKKGKEKIYSAERFLIATGERPRYP 158 (484)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE--EEc--CCCE-EEEeccCCCceEEEeCEEEEecCCCCCCC
Confidence 0010 0122233456778899887643 332 2222 23433344 3699999999999998654
No 249
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.62 E-value=0.00025 Score=72.52 Aligned_cols=103 Identities=17% Similarity=0.320 Sum_probs=78.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhC---CCcEEEEeeCCcc------cCccCC-----HHHHHHHHHHHHhCCCEEEcCCee
Q 018320 41 GGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHC------MARLFT-----PKIASYYEEYYKSKGVKFVKGTVL 106 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~---g~~Vtlv~~~~~~------l~~~~~-----~~~~~~~~~~l~~~gV~v~~~~~v 106 (358)
..+++|||.|..|.-+.+.+.+. -.+||++...+++ +.+.+. +++.-.-.++.+++||+++++.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 36899999999999999998884 4579998766554 222222 233334457889999999999999
Q ss_pred eEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320 107 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 147 (358)
Q Consensus 107 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 147 (358)
+.|.. +. ..|...+|.++.+|.+|+|||+.|......
T Consensus 83 ~~idr--~~--k~V~t~~g~~~~YDkLilATGS~pfi~PiP 119 (793)
T COG1251 83 IQIDR--AN--KVVTTDAGRTVSYDKLIIATGSYPFILPIP 119 (793)
T ss_pred EEecc--Cc--ceEEccCCcEeecceeEEecCccccccCCC
Confidence 99975 22 357778899999999999999999876543
No 250
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.61 E-value=0.00032 Score=67.61 Aligned_cols=103 Identities=23% Similarity=0.282 Sum_probs=71.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccC----------CHHHHHHHHHHHHhC--CCEEEcCCeee
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF----------TPKIASYYEEYYKSK--GVKFVKGTVLS 107 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~~--gV~v~~~~~v~ 107 (358)
+.|+|||+|+|..|+.+...|-..-++|++|.++++++-..+ -..+.+.+....++. +++++ ...-.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEE-ecccE
Confidence 568999999999999999999988999999999887642212 234566666666554 55655 34555
Q ss_pred EEEEcCCCcEEE-EEcCCC----cEEecCeEEEeeCCCCChh
Q 018320 108 SFDVDSNGKVVA-VNLRDG----NRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 108 ~i~~~~~g~v~~-v~~~~g----~~i~~D~vi~a~G~~p~~~ 144 (358)
.+++ ++.++.. ..+.++ ..+.+|.+|+|+|..|++-
T Consensus 133 ~iDp-~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 133 KIDP-DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred eecc-cccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 6664 2232221 222344 4688999999999998874
No 251
>PLN02985 squalene monooxygenase
Probab=97.61 E-value=0.00058 Score=69.27 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=31.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 4589999999999999999999999999999863
No 252
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.60 E-value=0.00072 Score=65.26 Aligned_cols=31 Identities=19% Similarity=0.441 Sum_probs=29.4
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
+|+|||||.+|+.+|..|++.|.+|+|+++.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5899999999999999999999999999984
No 253
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.60 E-value=0.00088 Score=67.20 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=30.0
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
..|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~ 33 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG 33 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47999999999999999999999999999985
No 254
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.59 E-value=0.00063 Score=57.76 Aligned_cols=93 Identities=22% Similarity=0.397 Sum_probs=61.0
Q ss_pred EEEcCcHHHHHHHHHHHhC-----CCcEEEEeeCCcc---------------------cCccCC---HH-----------
Q 018320 45 VVIGGGYIGMECAASLVIN-----KINVTMVFPEAHC---------------------MARLFT---PK----------- 84 (358)
Q Consensus 45 vVIGgG~~gle~A~~L~~~-----g~~Vtlv~~~~~~---------------------l~~~~~---~~----------- 84 (358)
+|||+|+.|+-++..|.+. ..+|+|+++.+.- +....+ ++
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999987 4589999984321 000000 01
Q ss_pred ---------------HHHHHHHHHH------hCCCEEE-cCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320 85 ---------------IASYYEEYYK------SKGVKFV-KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 139 (358)
Q Consensus 85 ---------------~~~~~~~~l~------~~gV~v~-~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~ 139 (358)
..+++.+.++ ..||++. ...+|+.++..+++ ..+.+.+|..+.+|.||+|+|.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence 1222222221 2354443 24588888875555 4677899999999999999995
No 255
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.59 E-value=0.00031 Score=63.93 Aligned_cols=93 Identities=20% Similarity=0.284 Sum_probs=65.0
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc----------------C---CH--------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------F---TP-------------------- 83 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~----------------~---~~-------------------- 83 (358)
+++|||+|..|+.+|..|+..|.+||+++++.-+..+. | ++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 69999999999999999999999999999964321110 0 11
Q ss_pred -----------------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-cEEecCeEEEeeCC
Q 018320 84 -----------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGI 139 (358)
Q Consensus 84 -----------------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~ 139 (358)
.|+. +.+.| ....++.++++|+++...++. -.+..++| +...+|.|++++..
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsa-lak~L-AtdL~V~~~~rVt~v~~~~~~--W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSA-LAKFL-ATDLTVVLETRVTEVARTDND--WTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHH-HHHHH-hccchhhhhhhhhhheecCCe--eEEEecCCCcccccceEEEecCC
Confidence 1221 22222 235678888999999764333 46777565 56889999999874
No 256
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.58 E-value=0.00024 Score=71.87 Aligned_cols=31 Identities=32% Similarity=0.335 Sum_probs=29.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEee
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFP 72 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~ 72 (358)
-.++|||||+.|+.+|..++++|.+|+||++
T Consensus 6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 4799999999999999999999999999995
No 257
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.55 E-value=0.001 Score=62.42 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCCEEEcCCeeeEEEE-cCCCcEEEEEcCCCcEEecCeEEEeeCC
Q 018320 87 SYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLRDGNRLPTDMVVVGIGI 139 (358)
Q Consensus 87 ~~~~~~l~~~gV~v~~~~~v~~i~~-~~~g~v~~v~~~~g~~i~~D~vi~a~G~ 139 (358)
..++..+++.|+.|+.+..++.++- ++++..+.|.+++|..+.++.+|+++|.
T Consensus 157 k~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~Ga 210 (399)
T KOG2820|consen 157 KALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGA 210 (399)
T ss_pred HHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecH
Confidence 3346677888999999999988763 3456667899999999999999999994
No 258
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.51 E-value=0.00097 Score=66.75 Aligned_cols=32 Identities=19% Similarity=0.493 Sum_probs=29.7
Q ss_pred CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeC
Q 018320 42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPE 73 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~ 73 (358)
.+|+|||||++|+.+|..|++. |.+|+|+|+.
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~ 58 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD 58 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 4799999999999999999998 8999999974
No 259
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.51 E-value=0.0013 Score=68.25 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=30.9
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.-+|+|||||.+|+.+|..|+++|.+|+|||+.
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 357999999999999999999999999999984
No 260
>PRK08275 putative oxidoreductase; Provisional
Probab=97.48 E-value=0.0016 Score=66.73 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=70.8
Q ss_pred CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCc---------------------------------cCCH---
Q 018320 42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR---------------------------------LFTP--- 83 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~---------------------------------~~~~--- 83 (358)
-.|+|||+|..|+-+|..+++. |.+|+|+++.+..... ..++
T Consensus 10 ~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~v 89 (554)
T PRK08275 10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKAV 89 (554)
T ss_pred cCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHHH
Confidence 4799999999999999999987 6899999986431000 0011
Q ss_pred ------------------------------------------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCC
Q 018320 84 ------------------------------------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG 115 (358)
Q Consensus 84 ------------------------------------------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g 115 (358)
.+.+.+.+.+++.||+++.++.++++..++++
T Consensus 90 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g 169 (554)
T PRK08275 90 YAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDADG 169 (554)
T ss_pred HHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCC
Confidence 12234444556678999999999999764366
Q ss_pred cEEEEE---cCCCc--EEecCeEEEeeCCCC
Q 018320 116 KVVAVN---LRDGN--RLPTDMVVVGIGIRP 141 (358)
Q Consensus 116 ~v~~v~---~~~g~--~i~~D~vi~a~G~~p 141 (358)
++..+. ..+|+ .+.++.||+|+|...
T Consensus 170 ~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 170 RVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred eEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 666554 33554 478999999999653
No 261
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.47 E-value=0.0014 Score=67.03 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=30.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
-.|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~ 49 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAA 49 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence 479999999999999999999999999999854
No 262
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.47 E-value=0.0015 Score=67.99 Aligned_cols=103 Identities=21% Similarity=0.343 Sum_probs=70.5
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhC-CCcEEEEeeCCcccCc----------------------------------------
Q 018320 41 GGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMAR---------------------------------------- 79 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~-g~~Vtlv~~~~~~l~~---------------------------------------- 79 (358)
.-+|+|||||+.|+-+|..|+++ |.+|+|+++.+.....
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 35899999999999999999995 9999999986432100
Q ss_pred -----------c--------------CC-HHHHHHHHHHHHhCC--CEEEcCCeeeEEEEcCCC-cEEEEEcC------C
Q 018320 80 -----------L--------------FT-PKIASYYEEYYKSKG--VKFVKGTVLSSFDVDSNG-KVVAVNLR------D 124 (358)
Q Consensus 80 -----------~--------------~~-~~~~~~~~~~l~~~g--V~v~~~~~v~~i~~~~~g-~v~~v~~~------~ 124 (358)
. +. ..+.+.+.+.+.+.+ +++..++++++++.++++ ..+.+++. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 0 00 012333445555555 578889999999864332 11234443 3
Q ss_pred C--cEEecCeEEEeeCCCCCh
Q 018320 125 G--NRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 125 g--~~i~~D~vi~a~G~~p~~ 143 (358)
| +++.+|+||-|-|.++..
T Consensus 192 g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred CceEEEEeCEEEECCCCchHH
Confidence 5 579999999999987654
No 263
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.46 E-value=0.0012 Score=66.44 Aligned_cols=31 Identities=29% Similarity=0.263 Sum_probs=29.1
Q ss_pred CcEEEEcCcHHHHHHHHHHHhC-CCcEEEEee
Q 018320 42 GNAVVIGGGYIGMECAASLVIN-KINVTMVFP 72 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~-g~~Vtlv~~ 72 (358)
-.++|||+|+.|..+|..++++ |.+|.||++
T Consensus 4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~ 35 (486)
T TIGR01423 4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDV 35 (486)
T ss_pred cCEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence 4799999999999999999997 999999996
No 264
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.46 E-value=0.0012 Score=65.58 Aligned_cols=98 Identities=23% Similarity=0.315 Sum_probs=65.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc------------------------------------CCH-H
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------------------FTP-K 84 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~------------------------------------~~~-~ 84 (358)
-.++|||+|+.|.-+|..+++.|.+|.++|+.+.+.... +|- +
T Consensus 5 yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~~~ 84 (454)
T COG1249 5 YDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDFEK 84 (454)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCHHH
Confidence 479999999999999999999999999999985331100 111 0
Q ss_pred H-----------HHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 85 I-----------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 85 ~-----------~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
+ ...++..+++.||+++.+.. ++. +++.+ .|...+.+++.+|.+|+|||.+|...
T Consensus 85 ~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a--~f~--~~~~v-~V~~~~~~~~~a~~iiIATGS~p~~~ 150 (454)
T COG1249 85 LLARKDKVVRLLTGGVEGLLKKNGVDVIRGEA--RFV--DPHTV-EVTGEDKETITADNIIIATGSRPRIP 150 (454)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEE--EEC--CCCEE-EEcCCCceEEEeCEEEEcCCCCCcCC
Confidence 1 11223445566899887642 443 23322 23322347899999999999999764
No 265
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0011 Score=58.83 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=73.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC--------------------CcccCccCCHHHHHHHHHHHHhCCCEE
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE--------------------AHCMARLFTPKIASYYEEYYKSKGVKF 100 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~--------------------~~~l~~~~~~~~~~~~~~~l~~~gV~v 100 (358)
..+|+|||+|+.+...|..+++...+-.++|-. |-+-.....+++.+.++++-++.|.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 358999999999999999999987777776542 222223356889999999999999999
Q ss_pred EcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCCh
Q 018320 101 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 101 ~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 143 (358)
+++ .|.+++. ..+...+. +|.+.+.+|.||+|+|.....
T Consensus 88 ~tE-tVskv~~--sskpF~l~-td~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 88 ITE-TVSKVDL--SSKPFKLW-TDARPVTADAVILATGASAKR 126 (322)
T ss_pred eee-ehhhccc--cCCCeEEE-ecCCceeeeeEEEecccceee
Confidence 976 4666653 23333343 466789999999999976543
No 266
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.44 E-value=0.0016 Score=66.95 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=29.6
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
.|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~ 32 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY 32 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 48999999999999999999999999999754
No 267
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.41 E-value=0.0019 Score=64.11 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=42.6
Q ss_pred HHHHHHhCCCEEEcCCeeeEEEEcC-CCcEEEEEcC-CCcEEecCeEEEeeC-CCCChhhhhc
Q 018320 89 YEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNLR-DGNRLPTDMVVVGIG-IRPNTSLFEG 148 (358)
Q Consensus 89 ~~~~l~~~gV~v~~~~~v~~i~~~~-~g~v~~v~~~-~g~~i~~D~vi~a~G-~~p~~~l~~~ 148 (358)
+.+.+++.|+++++++.++++..++ ++++..+... ++.++.++.||+|+| +..|.+++..
T Consensus 129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 129 LYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence 3344566789999999999987643 5666665543 335799999999999 5555565543
No 268
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.41 E-value=0.00024 Score=51.51 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=29.8
Q ss_pred EEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 46 VIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 46 VIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
|||+|..|+.+|..|++.|.+|+|+|+.+++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 899999999999999999999999999987654
No 269
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.40 E-value=0.0022 Score=63.75 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=36.5
Q ss_pred HHHHHHHh-CCCEEEcCCeeeEEEEcCCCcEEEEE-cCCCc--EEecCeEEEeeCCC
Q 018320 88 YYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVN-LRDGN--RLPTDMVVVGIGIR 140 (358)
Q Consensus 88 ~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~v~~v~-~~~g~--~i~~D~vi~a~G~~ 140 (358)
.+.+.+++ .||++++++.++++.. +++++..+. ..++. .+.++.||+|+|.-
T Consensus 133 ~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 133 ILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 34444544 4899999999999875 356655543 33444 58899999999963
No 270
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.001 Score=62.20 Aligned_cols=122 Identities=20% Similarity=0.236 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcE--EecCeEEEeeCCCCChhhh------hcc------
Q 018320 84 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLF------EGQ------ 149 (358)
Q Consensus 84 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~vi~a~G~~p~~~l~------~~~------ 149 (358)
.+.+.+.+.+++.|.-+.++.+|.+.+- .++++..+.+.+... +.+|..++|+|.--...+. .+.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi 337 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDI 337 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhccc
Confidence 3456677788889999999999999876 678888888887755 5689999999953221111 000
Q ss_pred c------cc-----------ccCcEEEeccccCC-----CCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHH
Q 018320 150 L------TL-----------EKGGIKVTGRLQSS-----NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI 207 (358)
Q Consensus 150 ~------~~-----------~~g~i~vd~~~~t~-----~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i 207 (358)
. .+ ..=++.+|++++-+ ..|+||||-+.+.++++... --...|+..|..||+.|
T Consensus 338 ~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~eg----cGsGVaivta~~aa~qi 413 (421)
T COG3075 338 LQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEG----CGSGVAIVTALHAAEQI 413 (421)
T ss_pred ccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhc----CCcchHHHHHHHHHHHH
Confidence 0 01 01247788888763 57899999999988764310 11235666777777777
Q ss_pred cCC
Q 018320 208 MEP 210 (358)
Q Consensus 208 ~g~ 210 (358)
+..
T Consensus 414 ~~~ 416 (421)
T COG3075 414 AER 416 (421)
T ss_pred HHH
Confidence 653
No 271
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.37 E-value=0.0024 Score=64.83 Aligned_cols=53 Identities=28% Similarity=0.468 Sum_probs=39.7
Q ss_pred HHHHHHhCCCEEEcCCeeeEEEEc-CC--CcEEEEEcC-CCc-----EEecCeEEEeeCCCC
Q 018320 89 YEEYYKSKGVKFVKGTVLSSFDVD-SN--GKVVAVNLR-DGN-----RLPTDMVVVGIGIRP 141 (358)
Q Consensus 89 ~~~~l~~~gV~v~~~~~v~~i~~~-~~--g~v~~v~~~-~g~-----~i~~D~vi~a~G~~p 141 (358)
+.+.|+++||+|+++++|+++..+ ++ +++..+... +|+ ..+.|.||+++|.-.
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 466888899999999999999864 23 567777664 332 356899999999543
No 272
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.35 E-value=0.0024 Score=66.15 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=29.1
Q ss_pred EEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 44 AVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 44 vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 6899999999999999999999999999865
No 273
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.00056 Score=67.97 Aligned_cols=96 Identities=20% Similarity=0.286 Sum_probs=66.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc------------------------------------------cCc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC------------------------------------------MAR 79 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~------------------------------------------l~~ 79 (358)
-.|+|||||-.|+|+|.+.++.|+++.++.....- +..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 47999999999999999999999999988763211 000
Q ss_pred -----------cCCHH-HHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCC-cEEEEEcCCCcEEecCeEEEeeCC
Q 018320 80 -----------LFTPK-IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVVGIGI 139 (358)
Q Consensus 80 -----------~~~~~-~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g-~v~~v~~~~g~~i~~D~vi~a~G~ 139 (358)
+.|.. ....+++.++. .++.++.+ .|+++.- +++ ++..|.+.+|..+.|+.||++||.
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~-e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIV-EEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhh-cCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 00110 12233344433 46777654 4555544 344 588999999999999999999995
No 274
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.35 E-value=0.0019 Score=65.57 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=30.9
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.-.|+|||||.+|+-+|..|+++|.+|+|+|+.
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 357999999999999999999999999999985
No 275
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.0018 Score=63.59 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=64.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCC---CcEEEEeeCCcccCc--------------------cC----CHH----------
Q 018320 42 GNAVVIGGGYIGMECAASLVINK---INVTMVFPEAHCMAR--------------------LF----TPK---------- 84 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g---~~Vtlv~~~~~~l~~--------------------~~----~~~---------- 84 (358)
++|+|||||++|+.+|..|.+.- ..|+|+++.+++... .+ +.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999998751 239999986554110 00 001
Q ss_pred ------------------------HHHHHHHHHHhCC---CEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEee
Q 018320 85 ------------------------IASYYEEYYKSKG---VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 137 (358)
Q Consensus 85 ------------------------~~~~~~~~l~~~g---V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~ 137 (358)
+.+.+...+++.- |.++ .++.+++..++++....+...+|....+|.+|++|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 1222222233222 3333 34455555544566667788899999999999999
Q ss_pred CCCCCh
Q 018320 138 GIRPNT 143 (358)
Q Consensus 138 G~~p~~ 143 (358)
|..+..
T Consensus 161 gh~~~~ 166 (474)
T COG4529 161 GHSAPP 166 (474)
T ss_pred cCCCCC
Confidence 976554
No 276
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.34 E-value=0.0028 Score=66.06 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=29.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
-.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 36 ~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~ 67 (640)
T PRK07573 36 FDVIVVGTGLAGASAAATLGELGYNVKVFCYQ 67 (640)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEecC
Confidence 47999999999999999999999999999863
No 277
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00024 Score=70.66 Aligned_cols=68 Identities=18% Similarity=0.145 Sum_probs=49.5
Q ss_pred CCCCCCccCCCCCCCCCC--eEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320 2 NMALKLEEFGLSGSDAEN--VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76 (358)
Q Consensus 2 ~~~~~P~~~~ipG~~~~~--v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~ 76 (358)
|.--.|..+.|+|.+.-. +++-....+.+. .++|+|+|||+|.+|+++|..|.+.|.+||++.|++..
T Consensus 141 G~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~-------~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 141 GHLSEPYIPDFAGLDEFKGRILHSADWPNPED-------LRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred cCCCCCCCCCCCCccCCCceEEchhcCCCccc-------cCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 344556666688876432 332222333322 27999999999999999999999999999999998754
No 278
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.33 E-value=0.0025 Score=65.15 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=29.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
-.|+|||+|..|+-+|..+ +.|.+|+|+++.+
T Consensus 8 ~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~ 39 (543)
T PRK06263 8 TDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGL 39 (543)
T ss_pred cCEEEECccHHHHHHHHHH-hcCCCEEEEEccC
Confidence 4799999999999999999 8899999999864
No 279
>PRK07846 mycothione reductase; Reviewed
Probab=97.32 E-value=0.0013 Score=65.66 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=58.9
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---------Cc--------------------------cCCH-HHH
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------AR--------------------------LFTP-KIA 86 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---------~~--------------------------~~~~-~~~ 86 (358)
.++|||+|+.|..+|.. ..|.+|.+||+.. +. |. .+|- ++.
T Consensus 3 D~vVIG~G~~g~~aa~~--~~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (451)
T PRK07846 3 DLIIIGTGSGNSILDER--FADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIV 79 (451)
T ss_pred CEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHH
Confidence 68999999999987754 4699999999742 10 00 0010 011
Q ss_pred HH-------H-----HHH-HHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhh
Q 018320 87 SY-------Y-----EEY-YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL 145 (358)
Q Consensus 87 ~~-------~-----~~~-l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l 145 (358)
+. + ... +++.||+++.+... -+ ++. .|++.+|+++.+|.+|+|||.+|....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~-~~---~~~---~V~v~~g~~~~~d~lViATGs~p~~p~ 144 (451)
T PRK07846 80 SRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHAR-FI---GPK---TLRTGDGEEITADQVVIAAGSRPVIPP 144 (451)
T ss_pred HHHHHHHHHHhccchhhhhhhhCCcEEEEEEEE-Ee---cCC---EEEECCCCEEEeCEEEEcCCCCCCCCC
Confidence 11 1 112 45567888776432 12 222 455667888999999999999987543
No 280
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.32 E-value=0.0032 Score=65.27 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=30.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~ 74 (358)
-.|+|||+|..|+-+|..+++. |.+|.|+++.+
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~ 46 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN 46 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 3799999999999999999998 99999999864
No 281
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.32 E-value=0.0025 Score=64.25 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=68.1
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC-------------------------------ccCC---------
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------------------------------RLFT--------- 82 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~~~~--------- 82 (358)
.|+|||+|..|+-+|..+++.|. |+|+++.+.... ...+
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 82 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFVVS 82 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 69999999999999999999997 999998632100 0001
Q ss_pred ---------------------------------------------HHHHHHHHHHHHh-CCCEEEcCCeeeEEEEcCCCc
Q 018320 83 ---------------------------------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGK 116 (358)
Q Consensus 83 ---------------------------------------------~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~g~ 116 (358)
..+...+.+.+++ .||+++.++.++++.. +++.
T Consensus 83 ~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~ 161 (488)
T TIGR00551 83 DARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLI-ETGR 161 (488)
T ss_pred hHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeec-cCCE
Confidence 1223334444555 5899999999999875 3566
Q ss_pred EEEEEcCC-C--cEEecCeEEEeeCCCC
Q 018320 117 VVAVNLRD-G--NRLPTDMVVVGIGIRP 141 (358)
Q Consensus 117 v~~v~~~~-g--~~i~~D~vi~a~G~~p 141 (358)
+..+...+ + ..+.++.||+|+|...
T Consensus 162 v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 162 VVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred EEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 65554433 3 3689999999999654
No 282
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.31 E-value=0.0023 Score=62.42 Aligned_cols=84 Identities=19% Similarity=0.274 Sum_probs=66.4
Q ss_pred HHhCCCcEEEEe-eCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeC
Q 018320 60 LVINKINVTMVF-PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138 (358)
Q Consensus 60 L~~~g~~Vtlv~-~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G 138 (358)
+...|+..-++. +.+|+.. ..-+++.+.+.+.+++.|++++++++|..++. +++.+..+.+++|.++++|.||+|+|
T Consensus 150 ~~aa~a~~eil~~~~rHiGT-D~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGT-DILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHhCCCceeeeccccccCc-cchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccC
Confidence 344466555553 3445444 36788899999999999999999999999987 56667789999999999999999999
Q ss_pred CCCChhh
Q 018320 139 IRPNTSL 145 (358)
Q Consensus 139 ~~p~~~l 145 (358)
+.....+
T Consensus 228 rsg~dw~ 234 (486)
T COG2509 228 RSGRDWF 234 (486)
T ss_pred cchHHHH
Confidence 8876654
No 283
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.31 E-value=0.0032 Score=62.85 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=52.4
Q ss_pred CCCEEEcCCeeeEEEEcCCCcEEEEEcC-----------CC--cEEecCeEEEeeCCCCChh---hhhcccccccCcEEE
Q 018320 96 KGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DG--NRLPTDMVVVGIGIRPNTS---LFEGQLTLEKGGIKV 159 (358)
Q Consensus 96 ~gV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g--~~i~~D~vi~a~G~~p~~~---l~~~~~~~~~g~i~v 159 (358)
+.+.+++..+..+|.. .++++..+++. .| ++++||+|+-|+|++...- .++..+...+|.+.
T Consensus 324 r~i~l~F~~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~~g~pFd~~~~n~~grv~- 401 (506)
T PTZ00188 324 KIIEFIFYFEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFAENLYNQSVQMFKEDIG- 401 (506)
T ss_pred eEEEEEccCCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCCCCCCccccCCCCCCccc-
Confidence 3467778888888875 34667666655 23 3689999999999885431 11111111222222
Q ss_pred eccccCCCCcEEEEcccccccccccC
Q 018320 160 TGRLQSSNSSVYAVGDVAAFPLKLLG 185 (358)
Q Consensus 160 d~~~~t~~~~VyAiGD~~~~~~~~~g 185 (358)
+..|++|++|.+-..|..+.|
T Consensus 402 -----~~~~g~Y~~GWiKrGP~GvIg 422 (506)
T PTZ00188 402 -----QHKFAIFKAGWFDKGPKGNIA 422 (506)
T ss_pred -----CCCCCcEEeeecCcCCCceec
Confidence 136999999999988765443
No 284
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.30 E-value=0.003 Score=65.39 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=29.7
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
-.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 13 ~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~ 44 (598)
T PRK09078 13 YDVVVVGAGGAGLRATLGMAEAGLKTACITKV 44 (598)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence 36999999999999999999999999999875
No 285
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.30 E-value=0.00044 Score=70.89 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=81.0
Q ss_pred CCCcEEEEcCcHHHHHHHHH-------HHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEc
Q 018320 40 SGGNAVVIGGGYIGMECAAS-------LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 112 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~-------L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~ 112 (358)
.++.++++|+|++++|++.. +.+.|.+|++++..+..... ++..+...+.+.+++.||++++++.++++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~- 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLG-MGQALAAGLRIGLQRAGVPVLLNTPLTDLYV- 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCccc-CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence 36778999999999999875 67778888887665544433 6777888888999999999999999999986
Q ss_pred CCCcEEEEEcC-CCc--EEecC-eEEEeeC-CCCChhhhhc
Q 018320 113 SNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFEG 148 (358)
Q Consensus 113 ~~g~v~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~l~~~ 148 (358)
+++++..+... +++ .+.++ .||+|+| +.+|.++.+.
T Consensus 237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 45677666553 443 47785 6888776 6666666553
No 286
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.29 E-value=0.0028 Score=63.94 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=37.5
Q ss_pred HHHHHHh----CC--CEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320 89 YEEYYKS----KG--VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 141 (358)
Q Consensus 89 ~~~~l~~----~g--V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 141 (358)
+.+.+++ .| ++++++++|++|+.. ++....|.+.+| ++.+|.||+|+|...
T Consensus 217 l~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 217 FVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhH
Confidence 3445566 66 888999999999863 233445666666 699999999999653
No 287
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.29 E-value=0.0028 Score=64.20 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=30.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
-+|+|||||.+|+-+|..|+++|.+|.|+|+.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 47999999999999999999999999999986
No 288
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.28 E-value=0.003 Score=64.93 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=30.0
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
-.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~ 37 (566)
T PRK06452 6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKV 37 (566)
T ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEEcc
Confidence 47999999999999999999999999999975
No 289
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.26 E-value=0.00077 Score=71.72 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=30.8
Q ss_pred cEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCc
Q 018320 43 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAH 75 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~ 75 (358)
+|+|||||+.|+-+|..|++. |.+|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 899999999765
No 290
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.24 E-value=0.004 Score=64.65 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=30.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
-.|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus 30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~ 62 (617)
T PTZ00139 30 YDAVVVGAGGAGLRAALGLVELGYKTACISKLF 62 (617)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEeccC
Confidence 379999999999999999999999999999853
No 291
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.21 E-value=0.0045 Score=63.79 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=36.9
Q ss_pred HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE---cCCCc--EEecCeEEEeeCCC
Q 018320 89 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGN--RLPTDMVVVGIGIR 140 (358)
Q Consensus 89 ~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~---~~~g~--~i~~D~vi~a~G~~ 140 (358)
+.+.+++.||+++.++.++++.. +++++..+. ..+|+ .+.++.||+|+|..
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 44445667899999999999875 456655543 34554 58999999999964
No 292
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.19 E-value=0.005 Score=63.55 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=40.2
Q ss_pred HHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-CCc--EEecC-eEEEeeC-CCCChhhhhc
Q 018320 93 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFEG 148 (358)
Q Consensus 93 l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~l~~~ 148 (358)
.++.|+++++++.++++..+++|++..|... +++ .+.++ .||+|+| +.-|.++.+.
T Consensus 223 ~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 223 LKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred HHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 4466899999999999987667888776553 343 46787 5999997 5556666553
No 293
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.17 E-value=0.0051 Score=63.51 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=29.6
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus 9 DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~ 39 (588)
T PRK08958 9 DAVVIGAGGAGMRAALQISQSGQSCALLSKV 39 (588)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence 6999999999999999999999999999985
No 294
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.16 E-value=0.0021 Score=61.97 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=32.0
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~ 76 (358)
.+|+|||||..|+-.|..|.++|.+|+++|.++.+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 58999999999999999999999999999986543
No 295
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.15 E-value=0.0072 Score=62.30 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=39.9
Q ss_pred HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-Cc--EEec-CeEEEeeCCC-CChhhhh
Q 018320 89 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GN--RLPT-DMVVVGIGIR-PNTSLFE 147 (358)
Q Consensus 89 ~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~--~i~~-D~vi~a~G~~-p~~~l~~ 147 (358)
+.+.+++.||++++++.++++.. +++++..|...+ ++ ++.+ +.||+|+|.- .|.++.+
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHH
Confidence 33445567899999999999875 467777766543 33 4675 6899999854 4445544
No 296
>PTZ00367 squalene epoxidase; Provisional
Probab=97.15 E-value=0.0034 Score=64.41 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=31.1
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 479999999999999999999999999999865
No 297
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.12 E-value=0.0053 Score=63.93 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=29.9
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
.|+|||+|..|+-+|..+++.|.+|+|+++..
T Consensus 52 DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~ 83 (635)
T PLN00128 52 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 83 (635)
T ss_pred CEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 69999999999999999999999999999853
No 298
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.11 E-value=0.0074 Score=62.40 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=30.0
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
-.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 47999999999999999999999999999985
No 299
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.11 E-value=0.00068 Score=69.78 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=79.5
Q ss_pred CCCcEEEEcCcH--HHHHHHHHHHhCCCcEEEEeeCCcccCccCC--------------HHHHHHHHHHHHhCCCEEEcC
Q 018320 40 SGGNAVVIGGGY--IGMECAASLVINKINVTMVFPEAHCMARLFT--------------PKIASYYEEYYKSKGVKFVKG 103 (358)
Q Consensus 40 ~~~~vvVIGgG~--~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~--------------~~~~~~~~~~l~~~gV~v~~~ 103 (358)
.++++.|+|+|+ ++.|++..+...+.+++++.+.+++++. ++ ..+.+.+.+.+++.||+++++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~ 234 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATH-LKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTG 234 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhh-HHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeC
Confidence 467899999999 9999999999999999888766555543 22 356677788888999999999
Q ss_pred CeeeEEEEcCCCcEEEEEcCC--Cc-EEecC-eEEEeeCCCCChh
Q 018320 104 TVLSSFDVDSNGKVVAVNLRD--GN-RLPTD-MVVVGIGIRPNTS 144 (358)
Q Consensus 104 ~~v~~i~~~~~g~v~~v~~~~--g~-~i~~D-~vi~a~G~~p~~~ 144 (358)
+.++++.. +++++..+...+ +. .+.++ .||+|+|..++..
T Consensus 235 ~~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~ 278 (574)
T PRK12842 235 TPARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSHDL 278 (574)
T ss_pred CEEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchH
Confidence 99999986 457776665543 33 47786 7999999776543
No 300
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.11 E-value=0.00063 Score=66.73 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=32.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~ 76 (358)
++|+|||||++|+|+|..|+++|.+|+|+++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 58999999999999999999999999999987655
No 301
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.08 E-value=0.0026 Score=63.39 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=59.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
++|+++|+|+|.+|+.+|..|++.|++|+++++.+. +.+ ....+.|.+.|++++.+....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~-~~~~~~l~~~~~~~~~~~~~~------------ 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQL-KEALEELGELGIELVLGEYPE------------ 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHH-HHHHHHHHhcCCEEEeCCcch------------
Confidence 478999999999999999999999999999987541 122 222344667788766543321
Q ss_pred EEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320 120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE 147 (358)
Q Consensus 120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 147 (358)
...-.+|.||.++|..|+...+.
T Consensus 64 -----~~~~~~d~vv~~~g~~~~~~~~~ 86 (450)
T PRK14106 64 -----EFLEGVDLVVVSPGVPLDSPPVV 86 (450)
T ss_pred -----hHhhcCCEEEECCCCCCCCHHHH
Confidence 01124799999999988877553
No 302
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.07 E-value=0.0059 Score=63.53 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=30.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
-.|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~ 41 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL 41 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 379999999999999999999999999999853
No 303
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.06 E-value=0.0041 Score=64.80 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=29.5
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.++|||+|+.|..+|..++++|.+|.||++.
T Consensus 118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 118 DVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 6999999999999999999999999999964
No 304
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.05 E-value=0.0055 Score=63.15 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=29.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCC---CcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINK---INVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g---~~Vtlv~~~~ 74 (358)
-.|+|||+|..|+-+|..+++.| .+|+|+++.+
T Consensus 6 ~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~ 41 (577)
T PRK06069 6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ 41 (577)
T ss_pred cCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence 36999999999999999999998 8999999753
No 305
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.03 E-value=0.0096 Score=61.48 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=38.4
Q ss_pred HHHHHHHhCCCEEEcCCeeeEEEEcCC---CcEEEEEc---CCCc--EEecCeEEEeeCCCC
Q 018320 88 YYEEYYKSKGVKFVKGTVLSSFDVDSN---GKVVAVNL---RDGN--RLPTDMVVVGIGIRP 141 (358)
Q Consensus 88 ~~~~~l~~~gV~v~~~~~v~~i~~~~~---g~v~~v~~---~~g~--~i~~D~vi~a~G~~p 141 (358)
.+.+.+++.||+++.++.++++..+++ |++..+.. .+|+ .+.++.||+|||...
T Consensus 145 ~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 145 TLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 344455667899999999999875332 67666643 3554 578999999999644
No 306
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.99 E-value=0.0017 Score=64.86 Aligned_cols=93 Identities=17% Similarity=0.267 Sum_probs=57.7
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc---------C------------------------c--cCC-HHH
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------A------------------------R--LFT-PKI 85 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l---------~------------------------~--~~~-~~~ 85 (358)
-.++|||+|+.|..+|. +..|.+|.+||+.. +. | . .+| +.+
T Consensus 3 yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 79 (452)
T TIGR03452 3 YDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI 79 (452)
T ss_pred cCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHH
Confidence 37999999999988854 45799999999742 10 0 0 011 001
Q ss_pred --------HHHHH----HHH---HhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 86 --------ASYYE----EYY---KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 86 --------~~~~~----~~l---~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
.+.+. +.+ ++.||+++.++.. +. +. ..|.+.+|+++.+|.+|+|||.+|...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~--~~--~~---~~V~~~~g~~~~~d~lIiATGs~p~~p 146 (452)
T TIGR03452 80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHAR--FV--GP---RTLRTGDGEEITGDQIVIAAGSRPYIP 146 (452)
T ss_pred HHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEE--Ee--cC---CEEEECCCcEEEeCEEEEEECCCCCCC
Confidence 11110 111 2267888876542 22 22 235556788899999999999998643
No 307
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0036 Score=61.32 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=29.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
--.|+|||||-.|+|.|.+.++.|.+.+++...
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 348999999999999999999999999998763
No 308
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.94 E-value=0.01 Score=61.40 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=30.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
...|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 347999999999999999999999999999964
No 309
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.93 E-value=0.0056 Score=62.71 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=28.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
-.|+|||+|..|+-+|..++ .|.+|+|+++.+
T Consensus 10 ~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~ 41 (553)
T PRK07395 10 FDVLVVGSGAAGLYAALCLP-SHLRVGLITKDT 41 (553)
T ss_pred CCEEEECccHHHHHHHHHhh-cCCCEEEEEccC
Confidence 47999999999999999986 499999999854
No 310
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.91 E-value=0.0063 Score=61.76 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=28.8
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
..|+|||+|..|+-+|..+++ |.+|+|+++.+
T Consensus 4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~ 35 (510)
T PRK08071 4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKKT 35 (510)
T ss_pred cCEEEECccHHHHHHHHHhhc-CCCEEEEeccC
Confidence 479999999999999999976 89999999854
No 311
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.87 E-value=0.00094 Score=60.53 Aligned_cols=93 Identities=18% Similarity=0.342 Sum_probs=58.9
Q ss_pred cEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCE----------EE--cCCeeeE
Q 018320 43 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK----------FV--KGTVLSS 108 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~----------v~--~~~~v~~ 108 (358)
+.+|||||..|+.||+.|+.+ ..+|.++..++-+-.- .--..+-+++++..|+ +. .+ .|..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksv----tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~-~v~~ 75 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV----TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLN-DVVT 75 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH----hhHHHHHHHHHhcCccccchhhhcccHHHHHH-hhhh
Confidence 368999999999999999976 5688888776543221 1112222333332221 11 01 1223
Q ss_pred EEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 109 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 109 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
++. .-..+.+.+|.++.++.+++++|.+|...
T Consensus 76 ~~s----~ehci~t~~g~~~ky~kKOG~tg~kPklq 107 (334)
T KOG2755|consen 76 WDS----SEHCIHTQNGEKLKYFKLCLCTGYKPKLQ 107 (334)
T ss_pred hcc----ccceEEecCCceeeEEEEEEecCCCccee
Confidence 321 11357889999999999999999999653
No 312
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.86 E-value=0.015 Score=60.10 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=30.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
..+|+|||+|..|+-+|..+++.|.+|+||++.+
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~ 45 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDP 45 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3579999999999999999999999999999743
No 313
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.85 E-value=0.012 Score=65.43 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=31.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
.-.|||||+|..|+-+|...++.|.+|+++|+.+.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~ 443 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK 443 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 46799999999999999999999999999998643
No 314
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.83 E-value=0.0083 Score=56.12 Aligned_cols=45 Identities=29% Similarity=0.311 Sum_probs=35.1
Q ss_pred CCEEEcCCeeeEEEEcCCCcEEEEEcCC--C--cEEecCeEEEeeCCCCC
Q 018320 97 GVKFVKGTVLSSFDVDSNGKVVAVNLRD--G--NRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 97 gV~v~~~~~v~~i~~~~~g~v~~v~~~~--g--~~i~~D~vi~a~G~~p~ 142 (358)
-+++.++++|+.|.. .+|++..|+.-| | ..+.+|.|++|+|--..
T Consensus 159 ~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 467889999999985 788888777643 3 35889999999985544
No 315
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.82 E-value=0.014 Score=61.04 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=30.1
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
-.|+|||+|..|+-+|..+++.|.+|.|+++.+
T Consensus 6 ~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~ 38 (657)
T PRK08626 6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVP 38 (657)
T ss_pred ccEEEECccHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 469999999999999999999999999998743
No 316
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.81 E-value=0.0022 Score=63.59 Aligned_cols=90 Identities=19% Similarity=0.268 Sum_probs=60.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC--CcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV 117 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~--~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v 117 (358)
.+|+|+|||.|.+|+|++..+++...+|++..+. ....+. . ....++..+.. |..+. +++
T Consensus 185 ~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~----~--------~~~~~~~~~~~--i~~~~--e~~-- 246 (448)
T KOG1399|consen 185 RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPP----E--------ILGENLWQVPS--IKSFT--EDG-- 246 (448)
T ss_pred cCceEEEECCCccHHHHHHHHHHhccCcceeeeccccccccc----c--------eeecceEEccc--ccccc--Ccc--
Confidence 5799999999999999999999998899888651 011110 0 01123333332 55554 333
Q ss_pred EEEEcCCCcEEecCeEEEeeCCCCChhhhhc
Q 018320 118 VAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 148 (358)
Q Consensus 118 ~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~ 148 (358)
.+-+.++....+|.+|+|||..-...++..
T Consensus 247 -~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~ 276 (448)
T KOG1399|consen 247 -SVFEKGGPVERVDRIIFCTGYKYKFPFLET 276 (448)
T ss_pred -eEEEcCceeEEeeeEEEeeeeEeecceecc
Confidence 244566778899999999998766666554
No 317
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.81 E-value=0.0017 Score=65.51 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=36.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 79 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~ 79 (358)
+.++|+|||||.+|+.+|..|.+.|.+|+|+|.++++..+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 4679999999999999999999999999999998877544
No 318
>PRK05320 rhodanese superfamily protein; Provisional
Probab=96.79 E-value=0.0015 Score=60.08 Aligned_cols=73 Identities=14% Similarity=0.028 Sum_probs=62.8
Q ss_pred EEEeCCCHHHHHHHHHHHHcCCCcccHHH-HhhcCCcccCCcCC----CCCCCCccccccccccccCccccchhhhhhHH
Q 018320 265 SFLEGGTKEEYEAIAKATRLQPVVEDLAE-LETQGLGFALAVSQ----KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVI 339 (358)
Q Consensus 265 a~~vg~~~~~~~~~a~ai~~~~~~~dl~~-l~~~~~~yap~~~~----~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 339 (358)
+++-| ..++++.++++|+.++++.||.. ++ ++|+|||++ ++++.+.+++.+.|.+.+..+.++++|+.+.+
T Consensus 46 ~t~~g-~~~~id~~~~~l~~~~~~~dl~~k~~---~~~~~pF~~l~vk~k~eiv~~g~~~~n~~~~~~~~is~~el~~~l 121 (257)
T PRK05320 46 LFLAG-TREAIDAFYAWLRADARFADLQVKES---LSDSQPFRRMLVKLKREIITMKRPAIRPELGRAPSVDAATLKRWL 121 (257)
T ss_pred EEEEe-eHHHHHHHHHHHhhCCCccCceeecc---cccCCCchhccchhhhHHhhcCCcccCcccCcCceeCHHHHHHHH
Confidence 44444 46789999999999999999986 76 899999999 89999999998999999999999999887765
Q ss_pred HH
Q 018320 340 LA 341 (358)
Q Consensus 340 ~~ 341 (358)
..
T Consensus 122 ~~ 123 (257)
T PRK05320 122 DQ 123 (257)
T ss_pred hc
Confidence 44
No 319
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.78 E-value=0.018 Score=59.01 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=30.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
-.|+|||+|..|+-+|..+++.|.+|.|+++.+
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999876
No 320
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=96.72 E-value=0.0098 Score=57.46 Aligned_cols=103 Identities=19% Similarity=0.280 Sum_probs=75.5
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhC------CCcEEEEeeCCcccCcc----------------------------------
Q 018320 41 GGNAVVIGGGYIGMECAASLVIN------KINVTMVFPEAHCMARL---------------------------------- 80 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~------g~~Vtlv~~~~~~l~~~---------------------------------- 80 (358)
.-.|+|||+|+.|+..|..|.++ ..+|.++|++..+....
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~ 155 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKF 155 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccce
Confidence 35799999999999999988865 45688888854331000
Q ss_pred ----------------CC---------HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-----------
Q 018320 81 ----------------FT---------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD----------- 124 (358)
Q Consensus 81 ----------------~~---------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~----------- 124 (358)
++ ..+..++-+..++.||+++++..+.++--++||.+..+.+.|
T Consensus 156 ~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd 235 (621)
T KOG2415|consen 156 KFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKD 235 (621)
T ss_pred eeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccc
Confidence 00 124555667778899999999999999888899888887654
Q ss_pred ----CcEEecCeEEEeeCCCCCh
Q 018320 125 ----GNRLPTDMVVVGIGIRPNT 143 (358)
Q Consensus 125 ----g~~i~~D~vi~a~G~~p~~ 143 (358)
|-++.+..-|+|-|-+-..
T Consensus 236 ~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 236 TFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred cccccceecceeEEEeccccchh
Confidence 2357788888888876543
No 321
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.69 E-value=0.00081 Score=62.60 Aligned_cols=104 Identities=24% Similarity=0.347 Sum_probs=65.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhC-CC-cEEEEeeCCcc-cCcc---CCHHHHHHHH-----HHHHhCCCEEEcCCeeeEE
Q 018320 41 GGNAVVIGGGYIGMECAASLVIN-KI-NVTMVFPEAHC-MARL---FTPKIASYYE-----EYYKSKGVKFVKGTVLSSF 109 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~-g~-~Vtlv~~~~~~-l~~~---~~~~~~~~~~-----~~l~~~gV~v~~~~~v~~i 109 (358)
.-+++|||||..|+.+|..+.+. |. +|-|+|+.+.- ..+. ...-+...-. ..+--.|.+.+. ..|+++
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv~~f 117 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKVKEF 117 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHHHhc
Confidence 45799999999999999998865 44 78899876532 1110 1111111000 001112222222 456777
Q ss_pred EEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhhcc
Q 018320 110 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ 149 (358)
Q Consensus 110 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~ 149 (358)
+++++ .|.+.+|++|.+|.+|+|+|..-+.+-++..
T Consensus 118 ~P~~N----~v~t~gg~eIsYdylviA~Giql~y~~IkGl 153 (446)
T KOG3851|consen 118 NPDKN----TVVTRGGEEISYDYLVIAMGIQLDYGKIKGL 153 (446)
T ss_pred CCCcC----eEEccCCcEEeeeeEeeeeeceeccchhcCh
Confidence 76332 5778899999999999999998877766544
No 322
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.67 E-value=0.025 Score=58.43 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=29.0
Q ss_pred CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~ 74 (358)
-.|+|||+|..|+-+|..+++. |.+|+|+++.+
T Consensus 5 ~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~ 39 (582)
T PRK09231 5 ADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY 39 (582)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence 3699999999999999999987 47999999853
No 323
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.66 E-value=0.0023 Score=63.42 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=32.7
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCccc
Q 018320 42 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCM 77 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~l 77 (358)
++|+|||||.+|+-+|..|++.| .+|+|+|..+++.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 47999999999999999999988 8999999987764
No 324
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.63 E-value=0.033 Score=57.21 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=29.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
-.|+|||+|..|+-+|..+++.|.+|.|+|+.
T Consensus 7 ~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~ 38 (557)
T PRK12844 7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ 38 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 36999999999999999999999999999975
No 325
>PLN02815 L-aspartate oxidase
Probab=96.62 E-value=0.018 Score=59.54 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=29.1
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
-.|+|||+|..|+-+|..+++.| +|.|+++.+
T Consensus 30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~ 61 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKDE 61 (594)
T ss_pred cCEEEECccHHHHHHHHHHhhCC-CEEEEECCC
Confidence 37999999999999999999999 899999854
No 326
>PRK07512 L-aspartate oxidase; Provisional
Probab=96.62 E-value=0.013 Score=59.64 Aligned_cols=33 Identities=30% Similarity=0.547 Sum_probs=28.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
.-.|+|||+|..|+-+|..++ +.+|+|+++.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 358999999999999998886 579999988653
No 327
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.61 E-value=0.014 Score=57.38 Aligned_cols=112 Identities=20% Similarity=0.405 Sum_probs=69.8
Q ss_pred CCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC---C--cEEecCeEEEeeC
Q 018320 64 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIG 138 (358)
Q Consensus 64 g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G 138 (358)
..+|++....-+-.. ...-+++.+.=++.||+++.+ ++.+|....++++ .|...| | .++++|+|++++|
T Consensus 400 d~~v~I~YmDiRafG----~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l-~V~~EdTl~g~~~e~~~DLVVLa~G 473 (622)
T COG1148 400 DTDVTIYYMDIRAFG----KDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKL-IVRVEDTLTGEVKEIEADLVVLATG 473 (622)
T ss_pred CcceeEEEEEeeccC----ccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCee-EEEEEeccCccceecccceEEEeec
Confidence 457888776554333 222333444334779999977 5666665455552 233332 3 4789999999999
Q ss_pred CCCChhh--hhcc--ccc-ccCcEEEe-cc---ccCCCCcEEEEcccccccc
Q 018320 139 IRPNTSL--FEGQ--LTL-EKGGIKVT-GR---LQSSNSSVYAVGDVAAFPL 181 (358)
Q Consensus 139 ~~p~~~l--~~~~--~~~-~~g~i~vd-~~---~~t~~~~VyAiGD~~~~~~ 181 (358)
..|.... +... +.. ++|+++.. .. .+|+.++||.+|=|.++.+
T Consensus 474 mep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkd 525 (622)
T COG1148 474 MEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKD 525 (622)
T ss_pred cccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCcc
Confidence 9986542 2222 343 56777665 33 3468899999998877543
No 328
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.60 E-value=0.011 Score=57.33 Aligned_cols=96 Identities=26% Similarity=0.440 Sum_probs=66.3
Q ss_pred EEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCccc--CccCCHHH---------HHHHHHHHHhCCCEEEcCCeeeEEE
Q 018320 44 AVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM--ARLFTPKI---------ASYYEEYYKSKGVKFVKGTVLSSFD 110 (358)
Q Consensus 44 vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l--~~~~~~~~---------~~~~~~~l~~~gV~v~~~~~v~~i~ 110 (358)
++|||+|..|+.+|..|.+. ..+++++...+... ...+...+ .........+.++++++++++++++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 80 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID 80 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence 58999999999999998885 55788777664331 11011111 1110111146789999999999997
Q ss_pred EcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 111 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 111 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
. +. ..+.+.+| ++.+|.+++|+|.+|...
T Consensus 81 ~-~~---~~v~~~~g-~~~yd~LvlatGa~~~~~ 109 (415)
T COG0446 81 P-EN---KVVLLDDG-EIEYDYLVLATGARPRPP 109 (415)
T ss_pred C-CC---CEEEECCC-cccccEEEEcCCCcccCC
Confidence 5 22 24667777 899999999999998875
No 329
>PRK12839 hypothetical protein; Provisional
Probab=96.60 E-value=0.026 Score=58.13 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=29.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
-.|+|||+|..|+-+|..+++.|.+|+++++.
T Consensus 9 ~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~ 40 (572)
T PRK12839 9 YDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKA 40 (572)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 47999999999999999999999999999974
No 330
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.58 E-value=0.025 Score=58.11 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=29.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
-.|||||+| .|+.+|...++.|.+|.|+|+.+
T Consensus 17 ~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~ 48 (564)
T PRK12845 17 VDLLVVGSG-TGMAAALAAHELGLSVLIVEKSS 48 (564)
T ss_pred eCEEEECCc-HHHHHHHHHHHCCCcEEEEecCC
Confidence 479999999 89999999999999999999854
No 331
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.58 E-value=0.031 Score=57.70 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=29.1
Q ss_pred CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~ 74 (358)
-.|+|||+|..|+-+|..+++. |.+|+|+++.+
T Consensus 4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~ 38 (580)
T TIGR01176 4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVY 38 (580)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence 3699999999999999999987 57999999854
No 332
>PRK07233 hypothetical protein; Provisional
Probab=96.54 E-value=0.0033 Score=61.85 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=33.2
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
+|+|||||..|+.+|..|++.|.+|+|+|+.+++..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 589999999999999999999999999999887643
No 333
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.52 E-value=0.043 Score=56.91 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=28.6
Q ss_pred cEEEEcCcHHHHHHHHHHH----hCCCcEEEEeeCC
Q 018320 43 NAVVIGGGYIGMECAASLV----INKINVTMVFPEA 74 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~----~~g~~Vtlv~~~~ 74 (358)
.|+|||+|..|+-+|..++ +.|.+|+|+++.+
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~ 36 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN 36 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence 4899999999999999998 6799999998853
No 334
>PLN02268 probable polyamine oxidase
Probab=96.49 E-value=0.0036 Score=62.03 Aligned_cols=38 Identities=29% Similarity=0.429 Sum_probs=34.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 79 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~ 79 (358)
.+|+|||+|.+|+-+|..|.+.|.+|+|+|.++++..+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 37999999999999999999999999999998877544
No 335
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.0036 Score=62.04 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=34.8
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 79 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~ 79 (358)
+||+|+|||..|+.+|..|++.|++|||+|.++++..+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 58999999999999999999999999999999877543
No 336
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.47 E-value=0.012 Score=58.24 Aligned_cols=87 Identities=13% Similarity=0.212 Sum_probs=55.4
Q ss_pred HHHHHHhC--CCcEEEEeeCCcc------cCcc----CC-H-HHHHH-HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEE
Q 018320 56 CAASLVIN--KINVTMVFPEAHC------MARL----FT-P-KIASY-YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV 120 (358)
Q Consensus 56 ~A~~L~~~--g~~Vtlv~~~~~~------l~~~----~~-~-~~~~~-~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v 120 (358)
+|..|+++ ..+|||+++.+.+ ++.. .. + +.... ..+.+.+.||+++.++.|++++. ++..+ .+
T Consensus 2 aA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~-~~~~v-~~ 79 (427)
T TIGR03385 2 AASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVND-ERQTV-VV 79 (427)
T ss_pred HHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEEC-CCCEE-EE
Confidence 46667765 4689999998753 1111 11 1 11111 23344788999999999999975 33332 23
Q ss_pred EcC-CCcEEe--cCeEEEeeCCCCChh
Q 018320 121 NLR-DGNRLP--TDMVVVGIGIRPNTS 144 (358)
Q Consensus 121 ~~~-~g~~i~--~D~vi~a~G~~p~~~ 144 (358)
... +++++. +|.||+|||.+|+..
T Consensus 80 ~~~~~~~~~~~~yd~lIiATG~~p~~~ 106 (427)
T TIGR03385 80 RNNKTNETYEESYDYLILSPGASPIVP 106 (427)
T ss_pred EECCCCCEEecCCCEEEECCCCCCCCC
Confidence 322 345777 999999999998754
No 337
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.45 E-value=0.036 Score=56.62 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=28.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
-.|+|||+|..|+-+|..+++. .+|+|+++.+
T Consensus 9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~ 40 (536)
T PRK09077 9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGP 40 (536)
T ss_pred CCEEEECchHHHHHHHHHHHHC-CCEEEEeccC
Confidence 3799999999999999999886 8999999854
No 338
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.43 E-value=0.029 Score=56.53 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=31.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.-.++|||||..|+-+|..++.+|.+|.|+|+.
T Consensus 12 ~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~ 44 (532)
T COG0578 12 EFDVIVIGGGITGAGIARDAAGRGLKVALVEKG 44 (532)
T ss_pred CCCEEEECCchhhHHHHHHHHhCCCeEEEEecC
Confidence 458999999999999999999999999999994
No 339
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.43 E-value=0.0082 Score=50.27 Aligned_cols=83 Identities=22% Similarity=0.263 Sum_probs=55.3
Q ss_pred EEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC
Q 018320 44 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123 (358)
Q Consensus 44 vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~ 123 (358)
|+|+|+|.+|.-+|..|++.|.+|+++.|.++ .+.+++.|+.+.....-..+.. .....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~--------------~~~~~~~g~~~~~~~~~~~~~~-------~~~~~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPR--------------LEAIKEQGLTITGPDGDETVQP-------PIVIS 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHH--------------HHHHHHHCEEEEETTEEEEEEE-------EEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcccc--------------HHhhhheeEEEEecccceeccc-------ccccC
Confidence 68999999999999999999999999987531 2336777998887652112211 11122
Q ss_pred CC--cEEecCeEEEeeCCCCChhhhh
Q 018320 124 DG--NRLPTDMVVVGIGIRPNTSLFE 147 (358)
Q Consensus 124 ~g--~~i~~D~vi~a~G~~p~~~l~~ 147 (358)
+. ..-++|.||+++=.....+.++
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~ 85 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQ 85 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHH
T ss_pred cchhccCCCcEEEEEecccchHHHHH
Confidence 21 3356899999986555544444
No 340
>PRK07208 hypothetical protein; Provisional
Probab=96.38 E-value=0.0049 Score=61.87 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=34.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
+.++|+|||||++|+-+|..|.+.|.+|+|+|+.+++..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 357899999999999999999999999999999876643
No 341
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.34 E-value=0.0093 Score=57.34 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=57.8
Q ss_pred cEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcc--cCcc------------------CCH------------------
Q 018320 43 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC--MARL------------------FTP------------------ 83 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~--l~~~------------------~~~------------------ 83 (358)
.+++||.|+.++.+|..|...+ .++..+++.+.+ .+.. -+|
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 6899999999999999999886 789999987643 0000 011
Q ss_pred ------------HHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCC--cEEEEEcC----CCcEEecCeEEEeeCCCCChh
Q 018320 84 ------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG--KVVAVNLR----DGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 84 ------------~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g--~v~~v~~~----~g~~i~~D~vi~a~G~~p~~~ 144 (358)
+..++++-..++.+-.+..+.+|++|+...++ ....|.+. +++++.++.|++++|..|...
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence 11222222222344448889999999874443 34455552 346899999999999888764
No 342
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.32 E-value=0.015 Score=53.75 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=69.5
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcccC---ccC---CHHH----HHHHHHHHHhCCCEEEcCCeeeE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMA---RLF---TPKI----ASYYEEYYKSKGVKFVKGTVLSS 108 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~l~---~~~---~~~~----~~~~~~~l~~~gV~v~~~~~v~~ 108 (358)
...+|+|+|.|-+|.++|..|++.| .++||++...--.. +++ ..++ .+.+.+.+.+ +.++..|+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~----INP~~~V~~ 104 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQ----INPECRVTV 104 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHh----HCCCcEEEE
Confidence 5789999999999999999999999 58999987532211 111 1222 2334444443 344555655
Q ss_pred EEEcCCCcEEEEEcCCC-cEE--ecCeEEEeeCCC-CChhhhhcccccccCcEEEeccccCCCCcEEEEccccccc
Q 018320 109 FDVDSNGKVVAVNLRDG-NRL--PTDMVVVGIGIR-PNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFP 180 (358)
Q Consensus 109 i~~~~~g~v~~v~~~~g-~~i--~~D~vi~a~G~~-p~~~l~~~~~~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~ 180 (358)
+.. .+...+- ..+ .+|.||.|++.. +...+.+......-..|.+-.-..--+|.-+-++|.....
T Consensus 105 i~~-------~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp~~~~~~di~~t~ 173 (268)
T PRK15116 105 VDD-------FITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVVDLAKTI 173 (268)
T ss_pred Eec-------ccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCeEEEEeeeccc
Confidence 531 0110010 112 489999999853 3332322111111111222111222456677777776654
No 343
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.32 E-value=0.03 Score=55.18 Aligned_cols=88 Identities=23% Similarity=0.376 Sum_probs=53.8
Q ss_pred HHHHHHhC-CCEEEcCCeeeEEEEcCCCc-EEEEE-cC--CCcEEecCeEEEeeCCCCChhhhhccccc--ccCcEEEe-
Q 018320 89 YEEYYKSK-GVKFVKGTVLSSFDVDSNGK-VVAVN-LR--DGNRLPTDMVVVGIGIRPNTSLFEGQLTL--EKGGIKVT- 160 (358)
Q Consensus 89 ~~~~l~~~-gV~v~~~~~v~~i~~~~~g~-v~~v~-~~--~g~~i~~D~vi~a~G~~p~~~l~~~~~~~--~~g~i~vd- 160 (358)
+.+.+.+. |++++++++|+.|+..++|. ...+. .. +..++.++.|++..|...-.-+-+.++.. .-|+..|.
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyggfPVsG 266 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGGFPVSG 266 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccCCCcccc
Confidence 34456555 99999999999999877773 22222 22 33579999999999976443333333322 22444443
Q ss_pred ccccCCCC--------cEEEEccc
Q 018320 161 GRLQSSNS--------SVYAVGDV 176 (358)
Q Consensus 161 ~~~~t~~~--------~VyAiGD~ 176 (358)
.+++++.| .||-.-.+
T Consensus 267 ~fl~~~n~~vv~~H~aKVYgka~v 290 (488)
T PF06039_consen 267 QFLRCKNPEVVAQHNAKVYGKASV 290 (488)
T ss_pred eEEecCCHHHHHHhcceeeeeCCC
Confidence 44555433 46665554
No 344
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.31 E-value=0.0051 Score=62.09 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=33.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~ 76 (358)
..++||||||.-|+-+|..|++.|.+|+|+|+.+.+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~ 38 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV 38 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence 468999999999999999999999999999987665
No 345
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.26 E-value=0.012 Score=54.19 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=30.5
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCC------CcEEEEeeC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINK------INVTMVFPE 73 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g------~~Vtlv~~~ 73 (358)
..++++|||||.+|+-+|..|.+.+ ..|||+|..
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 3589999999999999999999987 689999873
No 346
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=96.12 E-value=0.0075 Score=60.81 Aligned_cols=36 Identities=33% Similarity=0.372 Sum_probs=33.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 77 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l 77 (358)
++|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 579999999999999999999999999999987663
No 347
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.12 E-value=0.0073 Score=60.22 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=32.7
Q ss_pred CcEEEEcCcHHHHHHHHHHHhC----CCcEEEEeeCCcc
Q 018320 42 GNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHC 76 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~----g~~Vtlv~~~~~~ 76 (358)
++|+|||||.+|+-+|..|++. |.+|+|+|+++++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV 41 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence 5899999999999999999998 9999999998766
No 348
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.09 E-value=0.0075 Score=57.69 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=31.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.-.|+|||+|.+|..+|..|++.|.+|++|||.
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 346999999999999999999999999999996
No 349
>PLN02576 protoporphyrinogen oxidase
Probab=96.09 E-value=0.0085 Score=60.44 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=35.0
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhC-CCcEEEEeeCCcccC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMA 78 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~-g~~Vtlv~~~~~~l~ 78 (358)
...+|+|||||.+|+-+|..|.+. |.+|+|+|..+++..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 356899999999999999999999 999999999887644
No 350
>PLN03000 amine oxidase
Probab=96.08 E-value=0.014 Score=62.21 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=42.8
Q ss_pred cCHHHHHHHHHHHhc-CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320 24 RDLADANRLVNVMKS-CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 77 (358)
Q Consensus 24 ~~~~da~~i~~~l~~-~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l 77 (358)
.++.++..+.+.+.. .+.++|+|||+|+.|+.+|..|.+.|.+|+++|..+++.
T Consensus 166 in~g~~~~~~~~~~~~~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG 220 (881)
T PLN03000 166 INFGIAQAIKDKFPAQSSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG 220 (881)
T ss_pred ccHHHHHHHHhhccccCCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence 456666666655432 235799999999999999999999999999999976653
No 351
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.01 E-value=0.0072 Score=47.51 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=31.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
++++++|||||..|..-+..|.+.|.+||++.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 6899999999999999999999999999999765
No 352
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=96.00 E-value=0.0072 Score=61.09 Aligned_cols=34 Identities=38% Similarity=0.420 Sum_probs=31.6
Q ss_pred EEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320 44 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 77 (358)
Q Consensus 44 vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l 77 (358)
|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G 34 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG 34 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence 6899999999999999999999999999987763
No 353
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=95.99 E-value=0.0089 Score=57.93 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=31.5
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
..+|+|||||.+|+.+|..|+++|.+|+++++..
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 4689999999999999999999999999999754
No 354
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=95.95 E-value=0.01 Score=59.17 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=32.6
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
+|+|||||..|+-+|..|.+.|.+|+|+|+.+++..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 589999999999999999999999999999876543
No 355
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=95.93 E-value=0.0093 Score=59.63 Aligned_cols=37 Identities=30% Similarity=0.334 Sum_probs=32.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHhC------CCcEEEEeeCCcccC
Q 018320 42 GNAVVIGGGYIGMECAASLVIN------KINVTMVFPEAHCMA 78 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~------g~~Vtlv~~~~~~l~ 78 (358)
++|+|||||.+|+-+|..|++. |.+|+|+|.++++..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 5799999999999999999986 379999999887643
No 356
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.87 E-value=0.032 Score=55.79 Aligned_cols=85 Identities=21% Similarity=0.181 Sum_probs=58.7
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL 122 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~ 122 (358)
++.|||.|.+|+.+|..|.+.|.+|++.++.+.. . . ....+.|++.|++++.+.... .+ .+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~--~-~-----~~~~~~l~~~gi~~~~g~~~~-~~--------~~~~ 64 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP--E-L-----LERQQELEQEGITVKLGKPLE-LE--------SFQP 64 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch--h-h-----HHHHHHHHHcCCEEEECCccc-hh--------hhhH
Confidence 5899999999999999999999999999876542 1 1 122345677799998764321 00 0000
Q ss_pred CCCcEEecCeEEEeeCCCCChhhhh
Q 018320 123 RDGNRLPTDMVVVGIGIRPNTSLFE 147 (358)
Q Consensus 123 ~~g~~i~~D~vi~a~G~~p~~~l~~ 147 (358)
..-.+|.|+++.|..|+...+.
T Consensus 65 ---~~~~~d~vv~s~gi~~~~~~~~ 86 (459)
T PRK02705 65 ---WLDQPDLVVVSPGIPWDHPTLV 86 (459)
T ss_pred ---HhhcCCEEEECCCCCCCCHHHH
Confidence 0124789999999988876554
No 357
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.84 E-value=0.11 Score=56.59 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=30.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
-.|+|||||..|+-+|..+++.|.+|+|+++.+
T Consensus 14 ~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~ 46 (897)
T PRK13800 14 CDVLVIGGGTAGTMAALTAAEHGANVLLLEKAH 46 (897)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 369999999999999999999999999998754
No 358
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.83 E-value=0.033 Score=49.50 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=31.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.+++++|||||.+|..-+..|.+.|.+||++.+.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 6899999999999999999999999999999753
No 359
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.82 E-value=0.015 Score=49.49 Aligned_cols=32 Identities=34% Similarity=0.346 Sum_probs=30.5
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEe
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVF 71 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~ 71 (358)
.+++++|||||.+|..-+..|.+.|++|++|.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 68999999999999999999999999999994
No 360
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.79 E-value=0.045 Score=54.76 Aligned_cols=92 Identities=18% Similarity=0.149 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeee
Q 018320 28 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLS 107 (358)
Q Consensus 28 da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~ 107 (358)
|..+++..+ .++++.|+|.|.+|+.+|..|.+.|.+|++.++.+... . +.. .+.|++.|+.+..+....
T Consensus 4 ~~~~~~~~~---~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---~-~~~----~~~l~~~gi~~~~~~~~~ 72 (458)
T PRK01710 4 DFNEFKKFI---KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE---L-GEV----SNELKELGVKLVLGENYL 72 (458)
T ss_pred hHHHHhhhh---cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc---c-hHH----HHHHHhCCCEEEeCCCCh
Confidence 344455554 46899999999999999999999999999998765311 1 111 233667788887542210
Q ss_pred EEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320 108 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 147 (358)
Q Consensus 108 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 147 (358)
. ..-.+|.||+++|..|..+.+.
T Consensus 73 ----------~-------~~~~~dlVV~Spgi~~~~p~~~ 95 (458)
T PRK01710 73 ----------D-------KLDGFDVIFKTPSMRIDSPELV 95 (458)
T ss_pred ----------H-------HhccCCEEEECCCCCCCchHHH
Confidence 0 0123799999999998766543
No 361
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=95.78 E-value=0.014 Score=54.58 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=35.0
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCcc
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL 80 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~ 80 (358)
+.+|||+|+.|+-+|..++++|.+|.||++++++....
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 68999999999999999999999999999999987653
No 362
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.75 E-value=0.056 Score=53.53 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=28.7
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
+|+|||+|..|+-+|..|.+. .+|+++.+.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~ 39 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGP 39 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCC
Confidence 799999999999999999987 9999999864
No 363
>PLN02529 lysine-specific histone demethylase 1
Probab=95.72 E-value=0.015 Score=61.31 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=32.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
+.++|+|||+|+.|+.+|..|+++|.+|+++|..++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 357899999999999999999999999999998654
No 364
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=95.65 E-value=0.014 Score=57.76 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=32.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCC--CcEEEEeeCCcc
Q 018320 42 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC 76 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g--~~Vtlv~~~~~~ 76 (358)
++++|||||.+|+..|..|++.+ ++|||+|+++++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 47999999999999999999999 999999998765
No 365
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.65 E-value=0.014 Score=56.41 Aligned_cols=98 Identities=22% Similarity=0.353 Sum_probs=66.0
Q ss_pred cEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcc--cCccCCHHH--------HHHH---------------------
Q 018320 43 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHC--MARLFTPKI--------ASYY--------------------- 89 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~--l~~~~~~~~--------~~~~--------------------- 89 (358)
.-+|||+|..+...+...... +.+|.+|...+.+ +.+.++.++ ...+
T Consensus 180 p~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ffv 259 (659)
T KOG1346|consen 180 PYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFFV 259 (659)
T ss_pred ceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCccee
Confidence 478999998887766666544 6678777655432 111122111 1000
Q ss_pred ----HHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCChh
Q 018320 90 ----EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 90 ----~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 144 (358)
......-||-+..+.++.++.. ++. .|.+.||.+|.+|.+++|||.+|...
T Consensus 260 speDLp~~~nGGvAvl~G~kvvkid~-~d~---~V~LnDG~~I~YdkcLIATG~~Pk~l 314 (659)
T KOG1346|consen 260 SPEDLPKAVNGGVAVLRGRKVVKIDE-EDK---KVILNDGTTIGYDKCLIATGVRPKKL 314 (659)
T ss_pred ChhHCcccccCceEEEeccceEEeec-ccC---eEEecCCcEeehhheeeecCcCcccc
Confidence 1122345899999999999975 332 57899999999999999999999864
No 366
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=95.57 E-value=0.018 Score=56.06 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=32.8
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
+++|||||.+|+.+|..|++.|.+|+++++++++..
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 689999999999999999999999999999876544
No 367
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=95.53 E-value=0.054 Score=43.56 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=22.2
Q ss_pred HHHHHcCCCCCCCCCCCCeEEEEec-CceEEEeecc
Q 018320 203 AVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGDN 237 (358)
Q Consensus 203 aa~~i~g~~~~~~~~~~p~~~~~~~-~~~~~~~G~~ 237 (358)
|++||.|.. .+|...|+||+.++ ++.+..+|..
T Consensus 1 AG~NM~ga~--~py~hq~~fwSdlgp~vgyeAvG~~ 34 (133)
T PF14721_consen 1 AGENMTGAN--KPYWHQSMFWSDLGPDVGYEAVGIV 34 (133)
T ss_dssp HHHHHTTT-----S-S--EEEEESSTTEEEEEEES-
T ss_pred CCccccCCC--CcccccchhHhhcCCCcCeEEeeec
Confidence 578999876 68999999999996 7888888853
No 368
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.49 E-value=0.14 Score=49.91 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=60.9
Q ss_pred HHHHHHHHHhCCCcEEEEeeCCcccCcc-CCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCC-CcEEec
Q 018320 53 GMECAASLVINKINVTMVFPEAHCMARL-FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPT 130 (358)
Q Consensus 53 gle~A~~L~~~g~~Vtlv~~~~~~l~~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~ 130 (358)
--++-..+.++|... ..++..+++|.. -..++.+.+...+++.||+++++++|++|+ +++ ..+.+.+ +..+.+
T Consensus 56 ~~d~~~fF~~~Gi~~-~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~--~~v~~~~~~~~~~a 130 (376)
T TIGR03862 56 AVALQDWARGLGIET-FVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT--LRFETPDGQSTIEA 130 (376)
T ss_pred HHHHHHHHHHCCCce-EECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc--EEEEECCCceEEec
Confidence 344556677778753 345666777732 346788889999999999999999999993 233 3455543 356999
Q ss_pred CeEEEeeCCCC
Q 018320 131 DMVVVGIGIRP 141 (358)
Q Consensus 131 D~vi~a~G~~p 141 (358)
|.||+|+|..+
T Consensus 131 ~~vIlAtGG~s 141 (376)
T TIGR03862 131 DAVVLALGGAS 141 (376)
T ss_pred CEEEEcCCCcc
Confidence 99999999764
No 369
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.48 E-value=0.016 Score=50.37 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=30.2
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
+|.|||+|..|..+|..++..|.+|+++++.+.-+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~ 36 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALE 36 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence 589999999999999999999999999998765443
No 370
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=95.45 E-value=0.019 Score=57.71 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=32.4
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 77 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l 77 (358)
+++|||||..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 58999999999999999999999999999987664
No 371
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=95.42 E-value=0.018 Score=58.02 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=29.7
Q ss_pred cEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCC
Q 018320 43 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEA 74 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~ 74 (358)
+|+|||||.+|+.+|..|+++ |.+|+|+|+.+
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~ 35 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLD 35 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 589999999999999999997 99999999954
No 372
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.40 E-value=0.12 Score=48.87 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=30.7
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
..++.|||+|.+|.-+|..|++.|.+|+++.|.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 358999999999999999999999999999885
No 373
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.36 E-value=0.026 Score=50.05 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=31.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEee
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFP 72 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~ 72 (358)
.+++++|||||.+|...+..|.+.|.+||++.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 689999999999999999999999999999964
No 374
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.35 E-value=0.047 Score=54.31 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=57.5
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
.+++++|+|+|-+|+.+|..|++.|.+|++.++.+.. ... ..+.|++.|+++..+.....+
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~-----~~~----~~~~l~~~g~~~~~~~~~~~~---------- 64 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFS-----ENP----EAQELLEEGIKVICGSHPLEL---------- 64 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCcc-----chh----HHHHHHhcCCEEEeCCCCHHH----------
Confidence 4689999999999999999999999999998765321 111 123456678887644221110
Q ss_pred EEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320 120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE 147 (358)
Q Consensus 120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 147 (358)
+.+ .+|.||.+.|..++..++.
T Consensus 65 --~~~----~~d~vV~s~gi~~~~~~~~ 86 (447)
T PRK02472 65 --LDE----DFDLMVKNPGIPYTNPMVE 86 (447)
T ss_pred --hcC----cCCEEEECCCCCCCCHHHH
Confidence 000 3799999999888776554
No 375
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=95.34 E-value=0.024 Score=55.45 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=36.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 79 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~ 79 (358)
+..+|+|||+|++||-.|..|.+.|.+|+|+|-++++..+
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 4678999999999999999999999999999998877544
No 376
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=95.34 E-value=0.021 Score=57.61 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=31.9
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~ 76 (358)
+++|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP 35 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 5899999999999999999999999999998765
No 377
>PLN02487 zeta-carotene desaturase
Probab=95.31 E-value=0.024 Score=58.22 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=33.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 77 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l 77 (358)
++|+|||+|..|+-+|..|.+.|++|+|+|+.+++.
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 499999999999999999999999999999987663
No 378
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.25 E-value=0.059 Score=53.67 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=56.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHh--CCCEEEcCCeeeEEEEcCCCcE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKV 117 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~--~gV~v~~~~~v~~i~~~~~g~v 117 (358)
.+++++|+|.|-+|+.+|..|+++|.+|++.+..+.. +. .+.|++ .||.+..+.....
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~------~~-----~~~l~~~~~gi~~~~g~~~~~--------- 63 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP------ER-----VAQIGKMFDGLVFYTGRLKDA--------- 63 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc------hh-----HHHHhhccCCcEEEeCCCCHH---------
Confidence 4689999999999999999999999999998765431 11 122443 4777664421100
Q ss_pred EEEEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320 118 VAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 147 (358)
Q Consensus 118 ~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 147 (358)
..-.+|.||+++|..|..+.+.
T Consensus 64 --------~~~~~d~vv~spgi~~~~p~~~ 85 (445)
T PRK04308 64 --------LDNGFDILALSPGISERQPDIE 85 (445)
T ss_pred --------HHhCCCEEEECCCCCCCCHHHH
Confidence 0124799999999999877654
No 379
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=95.21 E-value=0.028 Score=59.69 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=33.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~ 76 (358)
+.++|+|||+|..|+.+|..|.+.|.+|+++|+.+++
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 3578999999999999999999999999999997655
No 380
>PLN02612 phytoene desaturase
Probab=95.11 E-value=0.033 Score=57.34 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=34.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 77 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l 77 (358)
++++|+|||+|..|+-+|..|.+.|.+|+++|+.+++.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~g 129 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLG 129 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCC
Confidence 46789999999999999999999999999999976543
No 381
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.05 E-value=0.1 Score=49.33 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=30.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
.+++|+|+|.+|.-+|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999999853
No 382
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=94.94 E-value=0.032 Score=57.96 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=30.2
Q ss_pred ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320 161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208 (358)
Q Consensus 161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 208 (358)
++++|++|++||+|||+..... .+...+..+|++++.++.
T Consensus 389 ~~~~T~v~glyA~Ge~~~~~~~--------~l~~~s~~~g~~ag~~~~ 428 (608)
T PRK06854 389 YNRMTTVEGLFAAGDVVGGSPH--------KFSSGSFAEGRIAAKAAV 428 (608)
T ss_pred cccccCCCCEEEeeecCCCCcc--------hhHHHHHHHHHHHHHHHH
Confidence 9999999999999999753211 245566778888887765
No 383
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.94 E-value=0.075 Score=50.30 Aligned_cols=82 Identities=23% Similarity=0.304 Sum_probs=55.4
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEc
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL 122 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~ 122 (358)
++.|+|+|.+|.=+|..|++.|.+|+++.|.++ .+.+++.|+.+..... ... ......
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~--------------~~~l~~~GL~i~~~~~--~~~------~~~~~~ 59 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR--------------LEALKKKGLRIEDEGG--NFT------TPVVAA 59 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH--------------HHHHHhCCeEEecCCC--ccc------cccccc
Confidence 689999999999999999999988999888653 2346677888876544 100 001111
Q ss_pred CC-CcEEecCeEEEeeCCCCChhhh
Q 018320 123 RD-GNRLPTDMVVVGIGIRPNTSLF 146 (358)
Q Consensus 123 ~~-g~~i~~D~vi~a~G~~p~~~l~ 146 (358)
.+ ...-++|.||+++=.....+.+
T Consensus 60 ~~~~~~~~~Dlviv~vKa~q~~~al 84 (307)
T COG1893 60 TDAEALGPADLVIVTVKAYQLEEAL 84 (307)
T ss_pred cChhhcCCCCEEEEEeccccHHHHH
Confidence 11 2234799999998655444433
No 384
>PLN02568 polyamine oxidase
Probab=94.92 E-value=0.039 Score=56.41 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=33.6
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCC-----CcEEEEeeCCcccC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINK-----INVTMVFPEAHCMA 78 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g-----~~Vtlv~~~~~~l~ 78 (358)
..+|+|||+|..|+.+|..|++.| .+|+|+|+.+++..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 468999999999999999999887 89999999876643
No 385
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.88 E-value=0.15 Score=48.76 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=29.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.+|.|||.|.+|.-+|..|++.|.+|+++.|.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 36999999999999999999999999999863
No 386
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.86 E-value=0.095 Score=43.25 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=32.5
Q ss_pred cCCCCcEEEEcCcHHHHHHHHHHHhCCCc-EEEEeeC
Q 018320 38 SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPE 73 (358)
Q Consensus 38 ~~~~~~vvVIGgG~~gle~A~~L~~~g~~-Vtlv~~~ 73 (358)
+.++++++|||+|-+|-.++..|...|.+ |+++.|.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 34689999999999999999999999987 9999874
No 387
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.80 E-value=0.074 Score=53.24 Aligned_cols=78 Identities=18% Similarity=0.097 Sum_probs=56.3
Q ss_pred CCCcEEEEcCcHHHHH-HHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEE
Q 018320 40 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 118 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle-~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~ 118 (358)
+.+++.|+|-|-+|+. +|..|.++|.+|++.+..+. +. . +.|++.|+++..+.....
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~-------~~----~-~~l~~~gi~~~~~~~~~~---------- 63 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES-------AV----T-QRLLELGAIIFIGHDAEN---------- 63 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC-------hH----H-HHHHHCCCEEeCCCCHHH----------
Confidence 5689999999999999 79999999999999876542 11 1 236677888875321100
Q ss_pred EEEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320 119 AVNLRDGNRLPTDMVVVGIGIRPNTSLFE 147 (358)
Q Consensus 119 ~v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 147 (358)
+ -.+|.||++.|..|+.+.+.
T Consensus 64 ---~-----~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 64 ---I-----KDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred ---C-----CCCCEEEECCCCCCCCHHHH
Confidence 1 13799999999988776543
No 388
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.79 E-value=0.12 Score=48.79 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 140 (358)
Q Consensus 83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 140 (358)
..+...+.+.+++.|++++.++.|++++. +++.+..|.+.+| ++.+|.||+|+|..
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~ 192 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAW 192 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChh
Confidence 45677778888999999999999999986 4555666777666 79999999999954
No 389
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.79 E-value=0.15 Score=47.89 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=28.6
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEee
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFP 72 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~ 72 (358)
++.|+|+|.+|.-+|..|++.|.+|+++.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 689999999999999999999999999987
No 390
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=94.78 E-value=0.53 Score=45.40 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=32.8
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~ 76 (358)
..-.++|||+|+-|.-+|...+++|.+...||.+..+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L 74 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence 3568999999999999999999999999999986544
No 391
>PLN02676 polyamine oxidase
Probab=94.74 E-value=0.048 Score=55.04 Aligned_cols=39 Identities=15% Similarity=0.328 Sum_probs=34.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcccC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMA 78 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~l~ 78 (358)
...+|+|||+|+.|+-+|..|++.|. +|+++|+.+++..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 45689999999999999999999998 6999999877644
No 392
>PLN02612 phytoene desaturase
Probab=94.71 E-value=0.12 Score=53.23 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeC
Q 018320 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 138 (358)
Q Consensus 83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G 138 (358)
..+.+.+.+.|++.|.++++++.|++|+.++++.+..+.+.+|+++.+|.||++++
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 45667788888889999999999999987667766678888899999999999976
No 393
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.71 E-value=0.036 Score=55.99 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=30.0
Q ss_pred CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~ 74 (358)
-.|+|||||.+|+.+|..|+++ |.+|+|+|+.+
T Consensus 6 ~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 6 TDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred ceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 4799999999999999999985 78999999865
No 394
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.18 Score=48.38 Aligned_cols=90 Identities=16% Similarity=0.233 Sum_probs=58.8
Q ss_pred CcEEEEcCcHHHHHHHHHHHhC--CCcEEEEeeCCcccCcc------CCHHH---HHHHHHHHHhCCCEEEcCCeeeEEE
Q 018320 42 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARL------FTPKI---ASYYEEYYKSKGVKFVKGTVLSSFD 110 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~~~~~l~~~------~~~~~---~~~~~~~l~~~gV~v~~~~~v~~i~ 110 (358)
.+|.|||+|+.|+-.|..|.++ +++|+++|+.|.++.-. -.|+. .+.+.+.+++....+..|.+|-
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG--- 97 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVG--- 97 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceec---
Confidence 4999999999999999998884 68999999988764310 12333 3444555666667777665431
Q ss_pred EcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 111 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 111 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
.+ +.+.+ -+-.+|.|++|.|....
T Consensus 98 --~d-----vsl~e-L~~~ydavvLaYGa~~d 121 (468)
T KOG1800|consen 98 --RD-----VSLKE-LTDNYDAVVLAYGADGD 121 (468)
T ss_pred --cc-----ccHHH-HhhcccEEEEEecCCCC
Confidence 01 11111 12358999999996544
No 395
>PRK08275 putative oxidoreductase; Provisional
Probab=94.64 E-value=0.037 Score=56.84 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=34.3
Q ss_pred CcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320 155 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208 (358)
Q Consensus 155 g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 208 (358)
|+|.||+.++|++|++||+|||+.... .....|...|+.|+.++.
T Consensus 357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~---------~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 357 SGVWVNEKAETTVPGLYAAGDMASVPH---------NYMLGAFTYGWFAGENAA 401 (554)
T ss_pred CcEEECCCCccCCCCEEECcccCCchh---------HHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999975321 234456677777777664
No 396
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.62 E-value=0.041 Score=51.56 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=33.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
++|.|||+|..|..+|..|+..|.+|+++++.+..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~ 42 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELAT 42 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 5899999999999999999999999999998876544
No 397
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=94.56 E-value=0.064 Score=52.80 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=34.5
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCCcccCc
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMAR 79 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~~~l~~ 79 (358)
...+|||||+|.+|+.+|..|.+.|. +|+|+|-.+++..+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 45689999999999999999997765 78999998888655
No 398
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.48 E-value=0.038 Score=60.01 Aligned_cols=47 Identities=23% Similarity=0.245 Sum_probs=35.6
Q ss_pred cCcEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
.|+|.||..++|++|++||+|||+.... .....+...|+.|+.++..
T Consensus 361 ~GGi~vd~~~~T~v~GLfAaGE~a~~~~---------nsl~~a~v~G~~Ag~~a~~ 407 (897)
T PRK13800 361 ASGVWVDEHARTTVPGLYAAGDLACVPH---------NYMIGAFVFGDLAGAHAAG 407 (897)
T ss_pred cceEEecCCCcccCCCeEechhccCcch---------hhhhhHHHhHHHHHHHHHH
Confidence 3789999999999999999999976432 2344566677777776643
No 399
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.47 E-value=0.054 Score=47.34 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=36.2
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc--------cCccCCHHHHHHHHHHHHhC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--------MARLFTPKIASYYEEYYKSK 96 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~--------l~~~~~~~~~~~~~~~l~~~ 96 (358)
+|.|||.|++|+-+|..|++.|.+|+.++..+.. .+ +..+.+.+.+.+.++..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p-~~E~~l~~ll~~~~~~~ 62 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELP-IYEPGLDELLKENVSAG 62 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSS-S-CTTHHHHHHHHHHTT
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhcccc-ccccchhhhhccccccc
Confidence 7999999999999999999999999999876432 22 23555666666555443
No 400
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.46 E-value=0.14 Score=51.59 Aligned_cols=79 Identities=23% Similarity=0.250 Sum_probs=55.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
.+++++|+|.|-+|+.+|..|.+.|.+|++.++... + . .+.+++.||+++.+.... +
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~-------~-~----~~~l~~~gi~~~~~~~~~------~----- 70 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNET-------A-R----HKLIEVTGVADISTAEAS------D----- 70 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChH-------H-H----HHHHHhcCcEEEeCCCch------h-----
Confidence 568999999999999999999999999999875321 1 1 122445688876542100 0
Q ss_pred EEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320 120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE 147 (358)
Q Consensus 120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 147 (358)
..-.+|.||.+.|..|..+.+.
T Consensus 71 ------~~~~~d~vV~Spgi~~~~p~~~ 92 (473)
T PRK00141 71 ------QLDSFSLVVTSPGWRPDSPLLV 92 (473)
T ss_pred ------HhcCCCEEEeCCCCCCCCHHHH
Confidence 0114789999999998876553
No 401
>PRK04148 hypothetical protein; Provisional
Probab=94.46 E-value=0.056 Score=44.52 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=34.5
Q ss_pred HHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 32 LVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 32 i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
|.+.+...+++++++||.| .|.++|..|++.|.+|+.++..+
T Consensus 8 l~~~~~~~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred HHHhcccccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 4444544456889999999 99999999999999999998654
No 402
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.27 E-value=0.14 Score=50.86 Aligned_cols=83 Identities=23% Similarity=0.241 Sum_probs=60.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
.+++|+|+|-|-+|+.+|..|.++|.+|++.+..+.. .. +. ...+...+|++..+....
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~---~~-----~~~~~~~~i~~~~g~~~~------------ 64 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EG---LA-----AQPLLLEGIEVELGSHDD------------ 64 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cc---hh-----hhhhhccCceeecCccch------------
Confidence 4789999999999999999999999999999876544 21 11 112344567776553221
Q ss_pred EEcCCCcEEecCeEEEeeCCCCChhhhhc
Q 018320 120 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG 148 (358)
Q Consensus 120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~~ 148 (358)
-..-.+|.||.++|..|...++..
T Consensus 65 -----~~~~~~d~vV~SPGi~~~~p~v~~ 88 (448)
T COG0771 65 -----EDLAEFDLVVKSPGIPPTHPLVEA 88 (448)
T ss_pred -----hccccCCEEEECCCCCCCCHHHHH
Confidence 113458999999999999886553
No 403
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=94.25 E-value=0.059 Score=50.31 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=30.5
Q ss_pred cEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeCCcccC
Q 018320 43 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMA 78 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~~~~l~ 78 (358)
.++|||+|..|+-+|..|++.+ .+|.|+|+++...+
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~ 38 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPP 38 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred CEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcc
Confidence 4899999999999999999997 69999999987655
No 404
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=94.14 E-value=0.19 Score=50.69 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 140 (358)
Q Consensus 83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 140 (358)
..+.+.+.+.+++.|+++++++.|++|.. +++++..+++.+|+++.+|.||++.|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 45677788889999999999999999986 4567778888899999999999998854
No 405
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=94.13 E-value=0.32 Score=49.97 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=39.0
Q ss_pred HHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320 89 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 141 (358)
Q Consensus 89 ~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 141 (358)
+....++.|..++.++.|+++.. .+++...|++.-| .+++..++=|+|+-.
T Consensus 193 la~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 193 LARAASALGALVIENCPVTGLHV-ETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCc-ceecceEEechhHHH
Confidence 34455678999999999999976 3444447887776 589999999999643
No 406
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.01 E-value=0.18 Score=50.94 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=55.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
.+++++|+|.|.+|+.++..|.+.|.+|++.++.+ .. . +.+++.|+.+..+... .
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~--------~~----~-~~l~~~g~~~~~~~~~-------~----- 65 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP--------DA----L-RPHAERGVATVSTSDA-------V----- 65 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH--------HH----H-HHHHhCCCEEEcCcch-------H-----
Confidence 47899999999999999999999999999977431 11 1 2255568877643110 0
Q ss_pred EEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320 120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE 147 (358)
Q Consensus 120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 147 (358)
...-.+|.||.++|..|+.+.+.
T Consensus 66 -----~~l~~~D~VV~SpGi~~~~p~~~ 88 (488)
T PRK03369 66 -----QQIADYALVVTSPGFRPTAPVLA 88 (488)
T ss_pred -----hHhhcCCEEEECCCCCCCCHHHH
Confidence 00113699999999998877554
No 407
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=93.88 E-value=0.077 Score=51.62 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=32.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcE--EEEeeCCcc
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINV--TMVFPEAHC 76 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~V--tlv~~~~~~ 76 (358)
.+.+++|+|||.+|+.+|..|++++.++ |++|.++++
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 5789999999999999999999998765 558887765
No 408
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=93.88 E-value=0.24 Score=49.33 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCc-----EEecCeEEEeeCC
Q 018320 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGI 139 (358)
Q Consensus 83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-----~i~~D~vi~a~G~ 139 (358)
..+.+.+.+.+++.|+++++++.|++|+.++++.+..+++.+|+ ++.+|.||+++..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 45667778888889999999999999986566767677776665 7999999999864
No 409
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.87 E-value=0.074 Score=45.06 Aligned_cols=32 Identities=34% Similarity=0.310 Sum_probs=29.5
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
+|+|+|+|..|.-+|..|++.|.+|+|..|.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999997743
No 410
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.87 E-value=0.097 Score=47.06 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=31.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
++++|+|||||.+|..=+..|.+.|.+||+|.+.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5789999999999999999999999999999753
No 411
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.85 E-value=0.22 Score=50.25 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=31.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
++.+++|+|+|.+|+.++..+..+|.+|+++++.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46799999999999999999999999999887643
No 412
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.72 E-value=0.42 Score=44.81 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=32.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
.+.+|+|+|||.+|.+.|......|.+||+++....
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~ 202 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID 202 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence 456899999999999999999999999999998743
No 413
>PRK08071 L-aspartate oxidase; Provisional
Probab=93.72 E-value=0.094 Score=53.28 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=38.9
Q ss_pred CcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018320 155 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 210 (358)
Q Consensus 155 g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~ 210 (358)
|+|.||.+.+|++|++||+|+|+... .+|..+.. .....+...|+.|++++...
T Consensus 333 GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 333 GGVKTNLDGETSIPGLYAIGEVACTG--VHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred CCEEECCCCcccCCCeEEcccccccc--cCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 67999999999999999999997521 12222211 23557788899999998643
No 414
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.69 E-value=0.085 Score=50.24 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=33.1
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCccc
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 77 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l 77 (358)
-++|.|||+|.+|..+|..++..|.+|+++++.+...
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~ 43 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAE 43 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 3789999999999999999999999999999876543
No 415
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.67 E-value=0.15 Score=43.76 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHH-hcCCCCcEEEEcCcH-HHHHHHHHHHhCCCcEEEEeeC
Q 018320 25 DLADANRLVNVM-KSCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 25 ~~~da~~i~~~l-~~~~~~~vvVIGgG~-~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
+..-+.++.+.+ .+..+++++|||+|- +|.-+|..|.++|.+|+++.|.
T Consensus 27 ~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 27 TPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred hHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 333444444433 345789999999997 5999999999999999999874
No 416
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=93.66 E-value=0.085 Score=53.61 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=30.2
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
-.|||||+| +|+-+|..+++.|.+|+|+++.+.
T Consensus 8 ~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 8 VDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred cCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 479999999 999999999999999999998653
No 417
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=93.65 E-value=0.092 Score=54.24 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=39.1
Q ss_pred cCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018320 154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 210 (358)
Q Consensus 154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~ 210 (358)
.|+|.||.+++|++|++||+|+|+... ++|..+.- .....|.-.|++|++++...
T Consensus 358 ~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 413 (582)
T PRK09231 358 MGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAER 413 (582)
T ss_pred CCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 467999999999999999999997521 12322221 23456778899998887653
No 418
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=93.64 E-value=0.09 Score=53.12 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=30.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhC--CCcEEEEee
Q 018320 41 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFP 72 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~--g~~Vtlv~~ 72 (358)
...|+|||||.+|+.+|..|++. +.+|+|+||
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 34799999999999999999999 899999999
No 419
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.57 E-value=0.1 Score=48.73 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=31.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
++|.|||+|..|..+|..|++.|.+|+++++.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5899999999999999999999999999987654
No 420
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=93.56 E-value=0.27 Score=49.71 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCC
Q 018320 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 140 (358)
Q Consensus 83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 140 (358)
..+.+.+.+.+++.|+++++++.|++|.. +++++..|++.+|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 46778888888999999999999999986 4556667888899899999999988753
No 421
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=93.46 E-value=0.098 Score=53.95 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=32.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
.-+|+|||+|..|+.+|..+++.|.+|+|+|+.+.
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~ 43 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV 43 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 34799999999999999999999999999998764
No 422
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.38 E-value=1.6 Score=43.34 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=30.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCC--cEEEEeeCC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEA 74 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~--~Vtlv~~~~ 74 (358)
..+|+|+|+|..-++....|.++|. +||++.|..
T Consensus 196 ~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 196 DDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred CCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 4579999999999999999999887 699998864
No 423
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=93.37 E-value=0.18 Score=44.65 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=59.2
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 121 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~ 121 (358)
+++.|+|.|.+|--+|..|++.|++|++-.++. ++-.+.+.+.+ +.. ++..+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~--------~~~~~a~a~~l---~~~------i~~~~----------- 53 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRG--------PKALAAAAAAL---GPL------ITGGS----------- 53 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCC--------hhHHHHHHHhh---ccc------cccCC-----------
Confidence 478999999999999999999999999986542 22222222322 222 11110
Q ss_pred cCCCcEEecCeEEEeeCCCCChhhhhcccccccCcEEEec
Q 018320 122 LRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG 161 (358)
Q Consensus 122 ~~~g~~i~~D~vi~a~G~~p~~~l~~~~~~~~~g~i~vd~ 161 (358)
. ..-.-.+|.|++++.+....+.+.+.....++.|.+|.
T Consensus 54 ~-~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~ 92 (211)
T COG2085 54 N-EDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDA 92 (211)
T ss_pred h-HHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEec
Confidence 0 01123489999999988777766654433457898884
No 424
>PRK09077 L-aspartate oxidase; Provisional
Probab=93.37 E-value=0.11 Score=53.15 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=39.0
Q ss_pred CcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018320 155 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 210 (358)
Q Consensus 155 g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~ 210 (358)
|+|.||.+.+|++|++||+|+|+... .+|..+.- .....|...|++|++++...
T Consensus 354 GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 354 GGVMVDLHGRTDLDGLYAIGEVSYTG--LHGANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred CCeeECCCCccccCCEEecccccccc--cCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999997421 12222211 24557888899999998654
No 425
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.34 E-value=0.11 Score=53.21 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=38.2
Q ss_pred CcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018320 155 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 210 (358)
Q Consensus 155 g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~ 210 (358)
|+|.||++.||++|++||+|+|+... +|..+.. .....|...|++|+++++..
T Consensus 349 GGi~vd~~~~t~IpGLyAaGE~~gg~---hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 349 GGIRINEDCETNIPGLFACGEVAGGV---HGANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred CCEEECCCCcccCCCeEeccccccCC---CCCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 56899999999999999999997532 2221111 23456788899999888653
No 426
>PRK07804 L-aspartate oxidase; Provisional
Probab=93.30 E-value=0.11 Score=53.17 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC-------CC-cEEecCeEEEeeCC
Q 018320 82 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-------DG-NRLPTDMVVVGIGI 139 (358)
Q Consensus 82 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~-------~g-~~i~~D~vi~a~G~ 139 (358)
...+...+.+.+++.||+++.++.++++..++++++..+... ++ ..+.++.||+|+|.
T Consensus 143 G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 143 GAEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 345667777778788899999999888876444555555432 22 35778888888874
No 427
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.27 E-value=0.098 Score=43.01 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=29.3
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE 73 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~ 73 (358)
.++|+|+|.|-+|.++|..|++.|. ++++++..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4799999999999999999999998 68998774
No 428
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=93.24 E-value=0.62 Score=45.36 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=36.2
Q ss_pred hCCCEEEcCCeeeEEEE------cCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320 95 SKGVKFVKGTVLSSFDV------DSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 141 (358)
Q Consensus 95 ~~gV~v~~~~~v~~i~~------~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 141 (358)
..+|+++..+++..+.. ++++....+.++||..+.+|++|=|-|+..
T Consensus 165 ~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns 217 (481)
T KOG3855|consen 165 SDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNS 217 (481)
T ss_pred cCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccc
Confidence 35788888877665533 456777789999999999999988888654
No 429
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=93.12 E-value=0.11 Score=51.76 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=34.5
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 79 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~ 79 (358)
-.|+|||+|..++-+|..|++.|++|.++++.+.+...
T Consensus 5 ~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~ 42 (443)
T PTZ00363 5 YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGE 42 (443)
T ss_pred ceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcc
Confidence 46999999999999999999999999999998877554
No 430
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.06 E-value=0.13 Score=48.18 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=31.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
++|.|||+|..|..+|..|++.|.+|+++++.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 5799999999999999999999999999987654
No 431
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.03 E-value=0.22 Score=44.05 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=31.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE 73 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~ 73 (358)
+.++|+|||+|-.|.++|..|++.|. ++++++..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46899999999999999999999999 69999876
No 432
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=92.97 E-value=0.14 Score=52.87 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=38.9
Q ss_pred cCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018320 154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 210 (358)
Q Consensus 154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~ 210 (358)
.|+|.+|...+|++|++||+|+|+... ++|..+.- .....|...|++|+.++...
T Consensus 357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~~ 412 (580)
T TIGR01176 357 MGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAER 412 (580)
T ss_pred CCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999997421 12322211 24556788899998887643
No 433
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.91 E-value=0.31 Score=48.92 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=53.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
.+|+++|+|.|-+|..+|..|.+.|.+|++.+..+.. . .++. ..|++ ++.+..+.. .
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~--~--~~~~-----~~l~~-~~~~~~~~~---------~---- 63 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAV--E--AREV-----GALAD-AALLVETEA---------S---- 63 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcc--c--chHH-----HHHhh-cCEEEeCCC---------C----
Confidence 4689999999999999999999999999998754321 1 1111 12444 333332210 0
Q ss_pred EEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320 120 VNLRDGNRLPTDMVVVGIGIRPNTSLFE 147 (358)
Q Consensus 120 v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 147 (358)
....-.+|.||.+.|..|+.+.+.
T Consensus 64 ----~~~~~~~d~vV~SpgI~~~~p~~~ 87 (468)
T PRK04690 64 ----AQRLAAFDVVVKSPGISPYRPEAL 87 (468)
T ss_pred ----hHHccCCCEEEECCCCCCCCHHHH
Confidence 001124799999999999877554
No 434
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=92.82 E-value=0.11 Score=49.43 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=33.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
+..+|+|||+|.+|+.+|..|+++ .+||++|...++..
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGG 44 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGG 44 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccC
Confidence 457899999999999999999987 79999998877643
No 435
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=92.77 E-value=0.51 Score=47.05 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCCC
Q 018320 82 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 142 (358)
Q Consensus 82 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 142 (358)
..++.+.+.+.++..|.++++++.|++|+.++++++..|++.+|+++.++.||......|.
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 3567888888888999999999999999875567777899999999999999998777765
No 436
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=92.71 E-value=0.17 Score=51.11 Aligned_cols=56 Identities=25% Similarity=0.289 Sum_probs=40.4
Q ss_pred ccCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018320 153 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 210 (358)
Q Consensus 153 ~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~ 210 (358)
.-|+|.||...||++|++||+|+|+... ++|..+.. .....|.-.|+.|++++...
T Consensus 332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 332 TCGGISVDDHGRTTVPGLYAIGEVACTG--LHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred ecCCEEECCCCcccCCCEEECccccccc--cCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 3588999999999999999999997421 12222211 23457888999999998653
No 437
>PLN02976 amine oxidase
Probab=92.67 E-value=0.17 Score=56.64 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=35.6
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 79 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~ 79 (358)
..++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence 3578999999999999999999999999999998776544
No 438
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=1.4 Score=41.91 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=28.4
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEe
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVF 71 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~ 71 (358)
.-.++|||||-.|+.||...+..|.+|.+++
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lD 49 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLD 49 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhcCCcEEEEe
Confidence 4579999999999999999999999998875
No 439
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.66 E-value=0.74 Score=43.94 Aligned_cols=98 Identities=23% Similarity=0.341 Sum_probs=65.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCc------------------------------------cCCH--
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFTP-- 83 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------~~~~-- 83 (358)
-..+|||||--|+..|...+..|.+|-++|..-.+... .|+-
T Consensus 21 fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~~ 100 (478)
T KOG0405|consen 21 FDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWKV 100 (478)
T ss_pred cceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHHH
Confidence 46899999999999999999999999999875221000 0110
Q ss_pred -------H---HHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcE--EecCeEEEeeCCCCChh
Q 018320 84 -------K---IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTS 144 (358)
Q Consensus 84 -------~---~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~vi~a~G~~p~~~ 144 (358)
. +...+++.|.+.+|+++.+.. ++. +++.+ .|+..||++ +.+..+++|+|.+|..+
T Consensus 101 ik~krdayi~RLngIY~~~L~k~~V~~i~G~a--~f~--~~~~v-~V~~~d~~~~~Ytak~iLIAtGg~p~~P 168 (478)
T KOG0405|consen 101 IKQKRDAYILRLNGIYKRNLAKAAVKLIEGRA--RFV--SPGEV-EVEVNDGTKIVYTAKHILIATGGRPIIP 168 (478)
T ss_pred HHhhhhHHHHHHHHHHHhhccccceeEEeeeE--EEc--CCCce-EEEecCCeeEEEecceEEEEeCCccCCC
Confidence 0 122234556667788887642 332 34443 566677753 67899999999887665
No 440
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=92.65 E-value=0.16 Score=50.27 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=30.0
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.+++|||+|..|+.+|..|++.|.+|++++++
T Consensus 3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence 47999999999999999999999999999975
No 441
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=92.58 E-value=0.16 Score=52.16 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=31.9
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~ 76 (358)
-.|+|||+|..|+-+|..+++.|.+|+|||+.+.+
T Consensus 8 ~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~ 42 (557)
T PRK07843 8 YDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 42 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 47999999999999999999999999999997643
No 442
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.56 E-value=0.17 Score=45.71 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=30.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
++++|+|+|..|..+|..|.+.|.+|+++++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 478999999999999999999999999998754
No 443
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=92.53 E-value=0.12 Score=48.74 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=31.4
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
..|-|||+|..|.|.|..++++|.+|.+.|.++.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 5789999999999999999999999999998753
No 444
>PLN02256 arogenate dehydrogenase
Probab=92.45 E-value=0.35 Score=45.74 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=46.9
Q ss_pred CCCccCCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 5 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 5 ~~P~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.+|+.+.+...|...-|- --.++++.+...+..++.|||.|.+|-.+|..|.+.|.+|+.+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 5 RRPRSLRVRAIDAAQPFD-----YESRLQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred CCCCCcccccccccCCCC-----hHhHHhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 456666666555444441 1235666666556789999999999999999999999999988764
No 445
>PRK08401 L-aspartate oxidase; Provisional
Probab=92.44 E-value=0.19 Score=50.49 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=38.7
Q ss_pred cCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320 154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g 209 (358)
-|+|.||...||++|++||+|+|+... ++|..+.. .....+...|+.|++++..
T Consensus 310 ~GGi~vd~~~~t~IpGLyAaGE~a~~G--~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 310 IGGISVDTFYRTGIKNLYAIGEAASNG--FHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CCCEEECCCCcccCCCEEECccccccC--CCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 467999999999999999999997421 12322221 2345677889999998864
No 446
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=92.40 E-value=0.32 Score=48.53 Aligned_cols=74 Identities=22% Similarity=0.231 Sum_probs=52.9
Q ss_pred cEEEEcCcHHHHH-HHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEE
Q 018320 43 NAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 121 (358)
Q Consensus 43 ~vvVIGgG~~gle-~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~ 121 (358)
++.+||-|-+|+. +|..|.++|.+|++.+..+. + ..+.|++.||++..+.....
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~~~------------- 55 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAEN-------A-----TTKRLEALGIPIYIGHSAEN------------- 55 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcc-------h-----HHHHHHHCcCEEeCCCCHHH-------------
Confidence 4789999999998 99999999999999876432 1 12346777888875421100
Q ss_pred cCCCcEEecCeEEEeeCCCCChhhh
Q 018320 122 LRDGNRLPTDMVVVGIGIRPNTSLF 146 (358)
Q Consensus 122 ~~~g~~i~~D~vi~a~G~~p~~~l~ 146 (358)
+ -.+|.||++.|..|+.+.+
T Consensus 56 ~-----~~~d~vV~spgi~~~~p~~ 75 (448)
T TIGR01082 56 L-----DDADVVVVSAAIKDDNPEI 75 (448)
T ss_pred C-----CCCCEEEECCCCCCCCHHH
Confidence 1 1278999999998876644
No 447
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.38 E-value=0.16 Score=47.98 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=31.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
++|.|||+|.+|..+|..|++.|.+|+++++.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4799999999999999999999999999998754
No 448
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.35 E-value=0.21 Score=39.51 Aligned_cols=73 Identities=26% Similarity=0.284 Sum_probs=47.4
Q ss_pred EEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcC
Q 018320 44 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 123 (358)
Q Consensus 44 vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~ 123 (358)
++|+|.|..|.+++..|.+.+.+|+++++.+. . .+.+++.|+.++.+... +. -.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~---------~----~~~~~~~~~~~i~gd~~------~~-----~~l~ 56 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE---------R----VEELREEGVEVIYGDAT------DP-----EVLE 56 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH---------H----HHHHHHTTSEEEES-TT------SH-----HHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH---------H----HHHHHhcccccccccch------hh-----hHHh
Confidence 68999999999999999997779999987532 2 23456677776654211 00 0011
Q ss_pred CCcEEecCeEEEeeCCC
Q 018320 124 DGNRLPTDMVVVGIGIR 140 (358)
Q Consensus 124 ~g~~i~~D~vi~a~G~~ 140 (358)
.-..-.++.++++++..
T Consensus 57 ~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 57 RAGIEKADAVVILTDDD 73 (116)
T ss_dssp HTTGGCESEEEEESSSH
T ss_pred hcCccccCEEEEccCCH
Confidence 11224688999998843
No 449
>PRK09620 hypothetical protein; Provisional
Probab=92.18 E-value=0.57 Score=42.37 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=29.4
Q ss_pred CCCcEEEEcC-----------------cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 40 SGGNAVVIGG-----------------GYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 40 ~~~~vvVIGg-----------------G~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.+++|+|-+| |++|..+|..|.++|.+|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4678888765 899999999999999999999753
No 450
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.10 E-value=0.22 Score=49.00 Aligned_cols=35 Identities=34% Similarity=0.391 Sum_probs=32.0
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
.+++|+|+|.|.+|..+|..++..|.+|+++++.+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 68999999999999999999999999999987653
No 451
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.05 E-value=0.26 Score=42.19 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=29.1
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
++.+++|+|+|.+|..++..|..+|.+|++++..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 5789999999999999999999999999998753
No 452
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=92.04 E-value=0.22 Score=49.40 Aligned_cols=56 Identities=29% Similarity=0.313 Sum_probs=41.8
Q ss_pred cCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCCC
Q 018320 154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEPD 211 (358)
Q Consensus 154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~~ 211 (358)
-|+|.||.+.||+.|++||+|.|+... +.|-.+.. ...-.+.-.|..+|++|.+..
T Consensus 341 mGGI~vD~~GrTsi~gLYAiGEvA~TG--lHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 341 MGGIAVDANGRTSIPGLYAIGEVACTG--LHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred cccEEECCCCcccCcccEEeeeecccc--cccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 488999999999999999999998753 23443322 123356778888999998764
No 453
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=91.88 E-value=0.37 Score=46.78 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCCcEEecCeEEEeeCCCC
Q 018320 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 141 (358)
Q Consensus 83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 141 (358)
..+...+.+.+++ |++++.++.|++++.+ ++. ..+++.+|..+.+|.||+|+|.-.
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCccc
Confidence 4556667777778 9999999999999863 333 457778887899999999999543
No 454
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.79 E-value=0.49 Score=41.38 Aligned_cols=35 Identities=34% Similarity=0.482 Sum_probs=31.3
Q ss_pred CCCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 39 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 39 ~~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.++++++|+|+ |.+|..++..|.+.|.+|+++.|.
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36789999997 999999999999999999999764
No 455
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=91.73 E-value=0.19 Score=52.19 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=27.5
Q ss_pred ccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHc
Q 018320 161 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 208 (358)
Q Consensus 161 ~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 208 (358)
...+|++|++||+|||+..... .++..+..+|.+++.++.
T Consensus 400 ~~~~T~i~gLyA~Ge~~~~~~h--------~l~~nsl~eg~~ag~~a~ 439 (614)
T TIGR02061 400 YNRMTTVEGLFTCGDGVGASPH--------KFSSGSFTEGRIAAKAAV 439 (614)
T ss_pred cCCccccCCEEeceecccCcch--------hhHHhHHHHHHHHHHHHH
Confidence 7889999999999999753211 234555566666666554
No 456
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=91.72 E-value=0.52 Score=46.71 Aligned_cols=78 Identities=22% Similarity=0.243 Sum_probs=52.8
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHH-hCCCEEEcCCeeeEEEEcCCCcEEEEE
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVN 121 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~-~~gV~v~~~~~v~~i~~~~~g~v~~v~ 121 (358)
++.|||-|-+|+.+|..|.+.|.+|+..+..+.... +. ....++ ..||++..+..... +
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~----~~----~~~~~~~~~gi~~~~g~~~~~-----------~- 60 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEEL----EP----SMGQLRLNEGSVLHTGLHLED-----------L- 60 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccc----hh----HHHHHhhccCcEEEecCchHH-----------h-
Confidence 478999999999999999999999999886543211 11 011222 35888875532100 1
Q ss_pred cCCCcEEecCeEEEeeCCCCChhhh
Q 018320 122 LRDGNRLPTDMVVVGIGIRPNTSLF 146 (358)
Q Consensus 122 ~~~g~~i~~D~vi~a~G~~p~~~l~ 146 (358)
-.+|.||+++|..|+.+.+
T Consensus 61 ------~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 61 ------NNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred ------ccCCEEEECCCCCCCCHHH
Confidence 1378999999998876644
No 457
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.71 E-value=0.31 Score=47.18 Aligned_cols=50 Identities=24% Similarity=0.390 Sum_probs=37.7
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc-------cCccCCHHHHHHHHHH
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------MARLFTPKIASYYEEY 92 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~-------l~~~~~~~~~~~~~~~ 92 (358)
++.|+|.|+.|+-.|..|++.|++|+.++..+.- ..+.++|.+.+.+++.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~ 58 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKEN 58 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhc
Confidence 6899999999999999999999999999865321 1224566665555443
No 458
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.66 E-value=0.22 Score=46.59 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=31.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
-++|.|||+|..|..+|..|++.|.+|+++++.+.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 46899999999999999999999999999987654
No 459
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.66 E-value=0.25 Score=46.25 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=32.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
.+++++|+|.|.+|..+|..|...|.+|+++.|.+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57999999999999999999999999999998754
No 460
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=91.54 E-value=0.24 Score=50.91 Aligned_cols=53 Identities=21% Similarity=0.193 Sum_probs=37.5
Q ss_pred CcEEEecccc----CCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320 155 GGIKVTGRLQ----SSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 155 g~i~vd~~~~----t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g 209 (358)
|+|.||...| |++|++||+|+|+... .+|..+.. .....|...|++|+.++..
T Consensus 343 GGi~id~~~~v~~~t~I~GLyAaGe~a~~g--~hGa~rl~g~sl~~a~v~G~~Ag~~aa~ 400 (566)
T TIGR01812 343 GGIPTDYTGRVICETIVKGLFAAGECACVS--VHGANRLGGNSLLELVVFGRIAGEAAAE 400 (566)
T ss_pred CCeEECcCcccccCcccCCeeecccccccC--cCcccccchhhHHHHHHHHHHHHHHHHH
Confidence 4688999999 9999999999997521 12222211 2355678888988888764
No 461
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=91.52 E-value=0.32 Score=43.40 Aligned_cols=34 Identities=35% Similarity=0.584 Sum_probs=31.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.+++|+|||||-.|..=|..|.+.|.+|+++.+.
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 6899999999999999999999999999999654
No 462
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=91.49 E-value=0.22 Score=41.28 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=29.0
Q ss_pred EEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 44 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 44 vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
++|+|+|.++..++..+...|.+|++++..+..++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~~ 35 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERFP 35 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccccC
Confidence 58999999999999999999999999998766443
No 463
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.46 E-value=0.54 Score=46.71 Aligned_cols=57 Identities=16% Similarity=0.281 Sum_probs=46.0
Q ss_pred CCeEEecCHHHHHHHHHHHhcC--CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 18 ENVCYLRDLADANRLVNVMKSC--SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 18 ~~v~~l~~~~da~~i~~~l~~~--~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
+.++.+-+.++..++.+.+... ..++++|+|+|..|..++..|.+.|.+|+++++.+
T Consensus 206 D~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~ 264 (453)
T PRK09496 206 DEVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDP 264 (453)
T ss_pred CEEEEEeCHHHHHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3566667777777777766532 35789999999999999999999999999998643
No 464
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.45 E-value=0.23 Score=46.55 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=31.2
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
++|.|||+|.+|..+|..|++.|.+|+++++.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 6899999999999999999999999999987654
No 465
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=91.44 E-value=0.26 Score=50.34 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=31.0
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~ 76 (358)
+|+|||+|+.|+-+|..|++.|.+|.+||++...
T Consensus 2 dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~ 35 (544)
T TIGR02462 2 DVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAAD 35 (544)
T ss_pred cEEEECCchHHHHHHHHHHHCCCeEEEEeccCcc
Confidence 5899999999999999999999999999997543
No 466
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=91.43 E-value=0.26 Score=41.99 Aligned_cols=35 Identities=31% Similarity=0.298 Sum_probs=28.9
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
.+|+++|+|=|.+|--+|..|+..|.+|++.+..|
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 68999999999999999999999999999998754
No 467
>PRK07512 L-aspartate oxidase; Provisional
Probab=91.42 E-value=0.25 Score=50.18 Aligned_cols=55 Identities=31% Similarity=0.314 Sum_probs=38.6
Q ss_pred cCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018320 154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 210 (358)
Q Consensus 154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~ 210 (358)
-|+|.||...+|++|++||+|+|+... .+|..+.. .....+...|++|++++...
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G--~hGanrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTG--LHGANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccC--CCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 477999999999999999999997421 12222211 13446777889999888654
No 468
>PRK02106 choline dehydrogenase; Validated
Probab=91.31 E-value=0.24 Score=50.89 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=30.8
Q ss_pred CcEEEEcCcHHHHHHHHHHHh-CCCcEEEEeeCC
Q 018320 42 GNAVVIGGGYIGMECAASLVI-NKINVTMVFPEA 74 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~-~g~~Vtlv~~~~ 74 (358)
-.++|||+|..|+-+|..|++ .|.+|.++|+++
T Consensus 6 ~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 6 YDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 379999999999999999999 799999999985
No 469
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.17 E-value=0.41 Score=41.41 Aligned_cols=36 Identities=25% Similarity=0.202 Sum_probs=32.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
.++++.|||-|.||-++|..|...|.+|..+.+...
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence 689999999999999999999999999999988653
No 470
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=91.14 E-value=0.29 Score=50.84 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=36.4
Q ss_pred CcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320 155 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 155 g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g 209 (358)
|+|.+|...+|++|++||+|+|+... +|..+.- .....+...|+.|+.++..
T Consensus 371 gG~~~d~~~~t~i~gL~a~Ge~~~~~---hg~nrl~~~sl~~~~v~g~~Ag~~aa~ 423 (603)
T TIGR01811 371 GGLWVDYDQMTNIPGLFAAGECDFSQ---HGANRLGANSLLSAIADGYFALPFTIP 423 (603)
T ss_pred CCeeECCCCcccCCCEEECcccccCc---CCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999997532 2332211 2344677778888777653
No 471
>PRK06175 L-aspartate oxidase; Provisional
Probab=91.12 E-value=0.32 Score=48.35 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=39.7
Q ss_pred ccCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320 153 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 153 ~~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g 209 (358)
.-|+|.||...||++|++||+|.|+... ++|..+.. .....+.-.|++|++++..
T Consensus 330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g--~hG~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 330 FMGGIKVDLNSKTSMKNLYAFGEVSCTG--VHGANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred ecCCEEECCCccccCCCeEecccccccC--CCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999997421 12222211 2345778889999998854
No 472
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.12 E-value=0.28 Score=50.76 Aligned_cols=53 Identities=21% Similarity=0.135 Sum_probs=38.4
Q ss_pred cCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320 154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g 209 (358)
-|+|.||...+|++|++||+|+|+... +|..+.. .....|...|++|+.++..
T Consensus 355 ~GGi~vd~~~~t~I~GLyAaGE~~~g~---hGanrlggnsl~~~lv~Gr~Ag~~aa~ 408 (589)
T PRK08641 355 MGGLWVDYDQMTNIPGLFAAGECDYSY---HGANRLGANSLLSAIYGGMVAGPNAVE 408 (589)
T ss_pred CCCeEECCCCCeECCCEEECcccccCC---CCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999997432 2332221 2345677788888887753
No 473
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.10 E-value=0.43 Score=42.22 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=31.2
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE 73 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~ 73 (358)
..++|+|||.|-+|.++|..|++.|. +++++++.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899999999999999999999998 79998875
No 474
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.09 E-value=0.62 Score=43.55 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHh-cCCCCcEEEEcCcH-HHHHHHHHHHhCCCcEEEEeeC
Q 018320 25 DLADANRLVNVMK-SCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 25 ~~~da~~i~~~l~-~~~~~~vvVIGgG~-~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
|..-..++.+... ...+++++|||.|. .|.-+|..|.++|+.||++++.
T Consensus 141 Tp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~ 191 (286)
T PRK14175 141 TPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR 191 (286)
T ss_pred cHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence 4555555555442 34789999999977 9999999999999999999864
No 475
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.02 E-value=0.49 Score=50.95 Aligned_cols=76 Identities=24% Similarity=0.189 Sum_probs=54.8
Q ss_pred CCcEEEEcCcHHHHHH-HHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEE
Q 018320 41 GGNAVVIGGGYIGMEC-AASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 119 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~-A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~ 119 (358)
-+++.|+|-|-+|+.+ |..|.++|.+|++.+..+. +. . +.|++.||++..+.....
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~-------~~----~-~~L~~~gi~~~~g~~~~~----------- 60 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG-------KT----V-EKLKAKGARFFLGHQEEH----------- 60 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC-------hH----H-HHHHHCCCEEeCCCCHHH-----------
Confidence 3579999999999998 9999999999999875431 11 1 236778998876532100
Q ss_pred EEcCCCcEEecCeEEEeeCCCCChhhh
Q 018320 120 VNLRDGNRLPTDMVVVGIGIRPNTSLF 146 (358)
Q Consensus 120 v~~~~g~~i~~D~vi~a~G~~p~~~l~ 146 (358)
+ -.+|.||++.|..|+...+
T Consensus 61 --~-----~~~d~vV~SpgI~~~~p~~ 80 (809)
T PRK14573 61 --V-----PEDAVVVYSSSISKDNVEY 80 (809)
T ss_pred --c-----CCCCEEEECCCcCCCCHHH
Confidence 1 1368899999988876644
No 476
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.99 E-value=0.26 Score=52.19 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
-++|.|||+|..|..+|..++..|.+|++++..+..+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~ 350 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLD 350 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 35899999999999999999999999999998765443
No 477
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=90.98 E-value=0.41 Score=42.36 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=31.4
Q ss_pred CCCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 39 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 39 ~~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.++++++|+|.|.+|..+|..|.+.|.+|++.++.
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36799999999999999999999999999987643
No 478
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.92 E-value=0.4 Score=46.01 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=31.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeCC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA 74 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~~ 74 (358)
+.++|+|||.|-+|.++|..|++.|. +++|+++..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 46899999999999999999999998 799998763
No 479
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.83 E-value=0.31 Score=45.60 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=29.1
Q ss_pred cEEEEcCcHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 43 NAVVIGGGYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 43 ~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
++.|||+|.+|.-+|..|++.|.+|+++.|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5899999999999999999999999999874
No 480
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.82 E-value=0.27 Score=52.04 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=33.2
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
++|.|||+|..|..+|..++..|++|++++..+..+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~ 350 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALD 350 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 5899999999999999999999999999998765443
No 481
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.80 E-value=0.36 Score=49.70 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=37.5
Q ss_pred cCcEEEeccccCC-CCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320 154 KGGIKVTGRLQSS-NSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 154 ~g~i~vd~~~~t~-~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g 209 (358)
-|+|.||.+.+|+ +|++||+|+|+... .+|..+.- .....+.-.|++|+.++..
T Consensus 346 ~GGi~vd~~~~t~~IpGLyAaGE~a~~g--~hGanrlggnsl~~~~v~G~~Ag~~aa~ 401 (566)
T PRK06452 346 MGGIDVDIDGRNPDIVGLFSAGEAACVS--VHGANRLGSNSLLDTLVFGQVTGRTVVQ 401 (566)
T ss_pred cCCeEECCCCCcCCcCCeEecccccccC--CCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 3678999999995 99999999997521 12222211 1345678888888888754
No 482
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.80 E-value=0.3 Score=45.43 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=31.6
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcc
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 76 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~ 76 (358)
++|.|||+|.+|..+|..|++.|.+|+++++.+..
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~ 38 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAA 38 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHH
Confidence 57999999999999999999999999999876543
No 483
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=90.71 E-value=0.86 Score=45.92 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeEEEEcCCCcEEEEEcCCC-----cEEecCeEEEeeCC
Q 018320 83 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-----NRLPTDMVVVGIGI 139 (358)
Q Consensus 83 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~g~v~~v~~~~g-----~~i~~D~vi~a~G~ 139 (358)
..+.+.+.+.+++.|++|++++.|++|..+ +++...+.+.++ +++.+|.||+++..
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 457788888899999999999999999873 444444555454 57899999999875
No 484
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.67 E-value=0.38 Score=47.27 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=32.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
.+++|+|+|.|.+|.-+|..++..|.+|+++++.+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 68999999999999999999999999999988654
No 485
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=90.62 E-value=0.57 Score=39.05 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=30.0
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCC-CcEEEEeeC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINK-INVTMVFPE 73 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g-~~Vtlv~~~ 73 (358)
++++++|+|+|.+|..++..|.+.| .+|+++.+.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 4689999999999999999999996 778888764
No 486
>PLN02815 L-aspartate oxidase
Probab=90.56 E-value=0.35 Score=50.10 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=38.6
Q ss_pred cCcEEEeccccCCCCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320 154 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 154 ~g~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g 209 (358)
-|+|.+|...+|++|++||+|+|+... ++|..+.. .....+.-.|+.|+.++..
T Consensus 377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G--~hGanrl~gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 377 CGGVRTGLQGETNVQGLYAAGEVACTG--LHGANRLASNSLLEALVFARRAVQPSID 431 (594)
T ss_pred CCCeeECCCCceecCCEEecccccccC--CCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999997421 12322221 2355777888888888753
No 487
>PRK06849 hypothetical protein; Provisional
Probab=90.53 E-value=0.83 Score=44.61 Aligned_cols=63 Identities=8% Similarity=0.010 Sum_probs=47.1
Q ss_pred CCCcEEEEcCcH-HHHHHHHHHHhCCCcEEEEeeCCccc---------------CccCCHHHHHHHHHHHHhCCCEEEc
Q 018320 40 SGGNAVVIGGGY-IGMECAASLVINKINVTMVFPEAHCM---------------ARLFTPKIASYYEEYYKSKGVKFVK 102 (358)
Q Consensus 40 ~~~~vvVIGgG~-~gle~A~~L~~~g~~Vtlv~~~~~~l---------------~~~~~~~~~~~~~~~l~~~gV~v~~ 102 (358)
.+++|+|.|++. .|+++|..|.+.|.+|++++..+..+ +..-++...+.+.+..++.+++++.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vI 81 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLI 81 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 468999999986 79999999999999999998764321 2211234567777777888887664
No 488
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=90.51 E-value=0.32 Score=49.25 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=34.3
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
+-++|.|||+|..|..+|..|++.|.+|+++++.+..+.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~ 42 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALA 42 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 357899999999999999999999999999998765443
No 489
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.46 E-value=0.37 Score=46.84 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=31.7
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
++++++|+|+|.+|..++..|..+|.+|+++++.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 56789999999999999999999999999998753
No 490
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.44 E-value=0.87 Score=45.36 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=54.0
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccCccCCHHHHHHHHHHHHh--CCCEEEcCC-eeeEEEEcCCCcE
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS--KGVKFVKGT-VLSSFDVDSNGKV 117 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~--~gV~v~~~~-~v~~i~~~~~g~v 117 (358)
...++|+|-|-+|+.+|..|.++|.+|+..+..+. .+ . .+.|++ .|++++.+. ...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~------~~-~----~~~l~~~~~g~~~~~~~~~~~---------- 64 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ------PP-G----LDTLAREFPDVELRCGGFDCE---------- 64 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC------ch-h----HHHHHhhcCCcEEEeCCCChH----------
Confidence 56899999999999999999999999999886542 11 1 122444 377776431 100
Q ss_pred EEEEcCCCcEEecCeEEEeeCCCCChhhhh
Q 018320 118 VAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 147 (358)
Q Consensus 118 ~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 147 (358)
..-.+|.||+++|..|+.+.+.
T Consensus 65 --------~~~~~d~vV~sp~i~~~~p~~~ 86 (448)
T PRK03803 65 --------LLVQASEIIISPGLALDTPALR 86 (448)
T ss_pred --------HhcCCCEEEECCCCCCCCHHHH
Confidence 0113789999999988766543
No 491
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=90.38 E-value=0.25 Score=48.57 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=36.4
Q ss_pred cEEEeccccCCCCcEEEEcccccccccccCcccccccHHHHHHHHHHHHHHHcC
Q 018320 156 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 156 ~i~vd~~~~t~~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 209 (358)
.|.+|+.+.|+.+++|++||+++... .+..|...|-.+|+.|+.
T Consensus 438 ri~~d~~~~t~i~gLy~aGdGAG~ar----------gI~~Aaa~Gi~~A~~i~~ 481 (486)
T COG2509 438 RIKVDEDLSTSIKGLYPAGDGAGLAR----------GIVSAAADGIKAAEGIAR 481 (486)
T ss_pred eEeecccceeeecceEEccccccccc----------hhHHHhhhhHHHHHHHHH
Confidence 57889999999999999999998753 355677788888888764
No 492
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=90.34 E-value=0.31 Score=51.81 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=33.3
Q ss_pred CcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 42 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 42 ~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
++|.|||+|..|..+|..++..|++|+++++.+..+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~ 372 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLD 372 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHH
Confidence 6899999999999999999999999999998766544
No 493
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.21 E-value=0.53 Score=45.21 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=31.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE 73 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~ 73 (358)
...+|+|||+|-+|.++|..|++.|. ++++++..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999999 89999875
No 494
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=90.20 E-value=0.36 Score=48.98 Aligned_cols=38 Identities=24% Similarity=0.181 Sum_probs=33.9
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCcccC
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 78 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~~l~ 78 (358)
-++|.|||+|..|..+|..|++.|.+|+++++.+..+.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~ 44 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAA 44 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 47899999999999999999999999999998766443
No 495
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=90.15 E-value=0.48 Score=40.56 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=29.4
Q ss_pred EEEEcC-cHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 44 AVVIGG-GYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 44 vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
|+|+|+ |.+|-.++..|.+.|.+|+.+.|.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 689996 99999999999999999999998754
No 496
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.14 E-value=0.36 Score=49.80 Aligned_cols=53 Identities=21% Similarity=0.183 Sum_probs=37.1
Q ss_pred CcEEEeccccCC------CCcEEEEcccccccccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018320 155 GGIKVTGRLQSS------NSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 209 (358)
Q Consensus 155 g~i~vd~~~~t~------~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g 209 (358)
|+|.||.+.+|+ +|++||+|+|+... .+|..+.- .....|...|++|+.++..
T Consensus 353 GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g--~hGanrlggnsl~~~~v~Gr~Ag~~aa~ 412 (577)
T PRK06069 353 GGIHTDVYGRVLTADGEWVRGLWAAGEAAAVS--VHGANRLGSNSTAECLVWGRIAGEQAAE 412 (577)
T ss_pred CCceECCCCcCcCCCCCEeCCeEecccccccc--ccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 568899999998 99999999997521 12222211 2345677888888888764
No 497
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.07 E-value=0.38 Score=45.12 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=31.8
Q ss_pred CCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCCc
Q 018320 41 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 75 (358)
Q Consensus 41 ~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~~ 75 (358)
-++|.|||+|.+|..+|..|+..|.+|+++++.+.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 36899999999999999999999999999987654
No 498
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=90.05 E-value=1.4 Score=39.91 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=30.4
Q ss_pred CCCcEEEEcC-cHHHHHHHHHHHhCCCcEEEEeeC
Q 018320 40 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE 73 (358)
Q Consensus 40 ~~~~vvVIGg-G~~gle~A~~L~~~g~~Vtlv~~~ 73 (358)
.+|+++|.|+ |.+|..+|..|.+.|.+|.++.|.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence 5789999995 899999999999999999988764
No 499
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.03 E-value=0.45 Score=47.01 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=32.5
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCCcEEEEeeCC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 74 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~~Vtlv~~~~ 74 (358)
.+++++|+|.|.+|..+|..|+..|.+|+++++.+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 68999999999999999999999999999988754
No 500
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=90.03 E-value=0.72 Score=40.67 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=30.4
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHhCCC-cEEEEeeC
Q 018320 40 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE 73 (358)
Q Consensus 40 ~~~~vvVIGgG~~gle~A~~L~~~g~-~Vtlv~~~ 73 (358)
+..+|+|+|.|.+|.|+|..|+..|. ++++++..
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46899999999999999999999998 48888765
Done!