BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018322
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 111/219 (50%), Gaps = 25/219 (11%)
Query: 150 GGSGTPILQLR---KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESE 206
GG G+ ++ K+ H+G VNR R M QNPHI A+ + V V+D H
Sbjct: 108 GGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKH-------- 159
Query: 207 TIVGQGAPQVSNQ-SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE----PAS 261
P S + +P ++ GH+ EGY + WN +G L++ + + LW+ P
Sbjct: 160 ----PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKE 215
Query: 262 DATWNVDPNP-FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--FKA 318
VD F GHSA VED+ W +F S + D + IWDTR ++ S A
Sbjct: 216 GKI--VDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDA 273
Query: 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357
H A+VN +S+N + +LA+GS D T ++ DLR LK++L
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 30/152 (19%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
AH VN + + I A+ + V +WDLR+ + L
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN--------------------LKLKL 312
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLW--------EPASDATWNVDPNPFI- 273
F HKDE + + W+P L + + + +W + A DA FI
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 274 -GHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
GH+A + D W+P EP V S S D + IW
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 34/199 (17%)
Query: 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP 221
H V + + + S AD + +WD RS+ S S
Sbjct: 226 TGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSN----------------TTSKPSH 269
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
LV H E + +NP + L TG + + LW+ + + + F H +
Sbjct: 270 LVD--AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHTFESHKDEIFQ 324
Query: 282 LQWSPTEPDVFASCSVDGHIAIWD-TRVGKSA------------LTSFKAHNADVNVISW 328
+ WSP + AS D + +WD +++G+ L H A ++ SW
Sbjct: 325 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW 384
Query: 329 NRLASCLLASGSDDGTFSI 347
N ++ S S+D I
Sbjct: 385 NPNEPWVICSVSEDNIMQI 403
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 106/203 (52%), Gaps = 18/203 (8%)
Query: 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ- 219
K+ H+G VNR R M QNP I A+ + V V+D H P S +
Sbjct: 120 KINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKH------------PSKPDPSGEC 167
Query: 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN--VDPNP-FIGHS 276
+P ++ GH+ EGY + WNP +G L++ + I LW+ ++ VD F GH+
Sbjct: 168 NPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHT 227
Query: 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--FKAHNADVNVISWNRLASC 334
A VED+ W +F S + D + IWDTR ++ S AH A+VN +S+N +
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF 287
Query: 335 LLASGSDDGTFSIHDLRLLKVRL 357
+LA+GS D T ++ DLR LK++L
Sbjct: 288 ILATGSADKTVALWDLRNLKLKL 310
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 71/199 (35%), Gaps = 34/199 (17%)
Query: 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP 221
H V + + + S AD + +WD RS+ + P
Sbjct: 224 TGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSN------------------NTSKP 265
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
H E + +NP + L TG + + LW+ + + + F H +
Sbjct: 266 SHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQ 322
Query: 282 LQWSPTEPDVFASCSVDGHIAIWD-TRVGKSA------------LTSFKAHNADVNVISW 328
+QWSP + AS D + +WD +++G+ L H A ++ SW
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSW 382
Query: 329 NRLASCLLASGSDDGTFSI 347
N ++ S S+D +
Sbjct: 383 NPNEPWVICSVSEDNIMQV 401
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 30/152 (19%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
AH VN + + I A+ + V +WDLR+ + L
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------------------KLKL 310
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPA----SDATWNVDPNP----FI- 273
F HKDE + + W+P L + + + +W+ + + + + P FI
Sbjct: 311 HSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIH 370
Query: 274 -GHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
GH+A + D W+P EP V S S D + +W
Sbjct: 371 GGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 110/219 (50%), Gaps = 25/219 (11%)
Query: 150 GGSGTPILQLR---KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESE 206
GG G+ ++ K+ H+G VNR R QNPHI A+ + V V+D H
Sbjct: 108 GGFGSVTGKIECEIKINHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKH-------- 159
Query: 207 TIVGQGAPQVSNQ-SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE----PAS 261
P S + +P ++ GH+ EGY + WN +G L++ + + LW+ P
Sbjct: 160 ----PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKE 215
Query: 262 DATWNVDPNP-FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--FKA 318
VD F GHSA VED+ W +F S + D + IWDTR ++ S A
Sbjct: 216 GKI--VDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDA 273
Query: 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357
H A+VN +S+N + +LA+GS D T ++ DLR LK++L
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 312
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 58/152 (38%), Gaps = 30/152 (19%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
AH VN + + I A+ + V +WDLR+ + L
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN--------------------LKLKL 312
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLW--------EPASDATWNVDPNPFI- 273
F HKDE + + W+P L + + + +W + A DA FI
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 274 -GHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
GH+A + D W+P EP V S S D IW
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 34/199 (17%)
Query: 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP 221
H V + + + S AD + +WD RS+ S S
Sbjct: 226 TGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSN----------------TTSKPSH 269
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
LV H E + +NP + L TG + + LW+ + + + F H +
Sbjct: 270 LVD--AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHTFESHKDEIFQ 324
Query: 282 LQWSPTEPDVFASCSVDGHIAIWD-TRVGKSA------------LTSFKAHNADVNVISW 328
+ WSP + AS D + +WD +++G+ L H A ++ SW
Sbjct: 325 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW 384
Query: 329 NRLASCLLASGSDDGTFSI 347
N ++ S S+D I
Sbjct: 385 NPNEPWVICSVSEDNIXQI 403
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 20/204 (9%)
Query: 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ- 219
K+ H+G VNR R M QN + A+ + V V+D H P+ S +
Sbjct: 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKH------------PSKPEPSGEC 171
Query: 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE----PASDATWNVDPNPFIGH 275
P ++ GH+ EGY + WNP G L++ + I LW+ P + N F GH
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA-KNIFTGH 230
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--FKAHNADVNVISWNRLAS 333
+A VED+ W +F S + D + IWDTR ++ S AH A+VN +S+N +
Sbjct: 231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 290
Query: 334 CLLASGSDDGTFSIHDLRLLKVRL 357
+LA+GS D T ++ DLR LK++L
Sbjct: 291 FILATGSADKTVALWDLRNLKLKL 314
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
AH VN + + I A+ + V +WDLR+ + L
Sbjct: 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------------------KLKL 314
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPA----SDATWNVDPNP----FI- 273
F HKDE + + W+P L + + +++W+ + +T + + P FI
Sbjct: 315 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 374
Query: 274 -GHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
GH+A + D W+P EP + S S D + +W
Sbjct: 375 GGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 23/181 (12%)
Query: 187 TGHVQV-----WDL--RSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239
TGH V W L S ++A+ + ++ + P H E + +NP
Sbjct: 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 287
Query: 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299
+ L TG + + LW+ + + + F H + +QWSP + AS D
Sbjct: 288 YSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344
Query: 300 HIAIWD-TRVGKSALTS------------FKAHNADVNVISWNRLASCLLASGSDDGTFS 346
+ +WD +++G+ T H A ++ SWN ++ S S+D
Sbjct: 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404
Query: 347 I 347
+
Sbjct: 405 V 405
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 20/204 (9%)
Query: 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ- 219
K+ H+G VNR R M QN + A+ + V V+D H P+ S +
Sbjct: 126 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKH------------PSKPEPSGEC 173
Query: 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE----PASDATWNVDPNPFIGH 275
P ++ GH+ EGY + WNP G L++ + I LW+ P + N F GH
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA-KNIFTGH 232
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--FKAHNADVNVISWNRLAS 333
+A VED+ W +F S + D + IWDTR ++ S AH A+VN +S+N +
Sbjct: 233 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 292
Query: 334 CLLASGSDDGTFSIHDLRLLKVRL 357
+LA+GS D T ++ DLR LK++L
Sbjct: 293 FILATGSADKTVALWDLRNLKLKL 316
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
AH VN + + I A+ + V +WDLR+ + L
Sbjct: 277 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------------------KLKL 316
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPA----SDATWNVDPNP----FI- 273
F HKDE + + W+P L + + +++W+ + +T + + P FI
Sbjct: 317 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 376
Query: 274 -GHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
GH+A + D W+P EP + S S D + +W
Sbjct: 377 GGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 23/181 (12%)
Query: 187 TGHVQV-----WDL--RSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239
TGH V W L S ++A+ + ++ + P H E + +NP
Sbjct: 230 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 289
Query: 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299
+ L TG + + LW+ + + + F H + +QWSP + AS D
Sbjct: 290 YSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 346
Query: 300 HIAIWD-TRVGKSALTS------------FKAHNADVNVISWNRLASCLLASGSDDGTFS 346
+ +WD +++G+ T H A ++ SWN ++ S S+D
Sbjct: 347 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 406
Query: 347 I 347
+
Sbjct: 407 V 407
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 20/204 (9%)
Query: 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ- 219
K+ H+G VNR R M QN + A+ + V V+D H P+ S +
Sbjct: 128 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKH------------PSKPEPSGEC 175
Query: 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE----PASDATWNVDPNPFIGH 275
P ++ GH+ EGY + WNP G L++ + I LW+ P + N F GH
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA-KNIFTGH 234
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--FKAHNADVNVISWNRLAS 333
+A VED+ W +F S + D + IWDTR ++ S AH A+VN +S+N +
Sbjct: 235 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 294
Query: 334 CLLASGSDDGTFSIHDLRLLKVRL 357
+LA+GS D T ++ DLR LK++L
Sbjct: 295 FILATGSADKTVALWDLRNLKLKL 318
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
AH VN + + I A+ + V +WDLR+ + L
Sbjct: 279 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------------------KLKL 318
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPA----SDATWNVDPNP----FI- 273
F HKDE + + W+P L + + +++W+ + +T + + P FI
Sbjct: 319 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 378
Query: 274 -GHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
GH+A + D W+P EP + S S D + +W
Sbjct: 379 GGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 23/181 (12%)
Query: 187 TGHVQV-----WDL--RSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239
TGH V W L S ++A+ + ++ + P H E + +NP
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 291
Query: 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299
+ L TG + + LW+ + + + F H + +QWSP + AS D
Sbjct: 292 YSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 348
Query: 300 HIAIWD-TRVGKSALTS------------FKAHNADVNVISWNRLASCLLASGSDDGTFS 346
+ +WD +++G+ T H A ++ SWN ++ S S+D
Sbjct: 349 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 408
Query: 347 I 347
+
Sbjct: 409 V 409
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWS 285
GHK + + P RL+TG + LW+ + ++ + F GH+A V L +
Sbjct: 155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214
Query: 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTF 345
++F S S D + +WD R+ A+ ++ H D+N + + +GSDDGT
Sbjct: 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTC 273
Query: 346 SIHDLR 351
+ D+R
Sbjct: 274 RLFDMR 279
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-----KAHNADVNVI 326
GH Q+ P + + S D +WD G+ ++ F H ADV +
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSL 211
Query: 327 SWNRLASCLLASGSDDGTFSIHDLRL 352
S N L + + SGS D T + DLR+
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDLRI 237
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319
GHS V L W+P E + S S DG + +W+ ALTS K H
Sbjct: 64 GHSGKVYSLDWTP-EKNWIVSASQDGRLIVWN------ALTSQKTH 102
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 263 ATWNVDP----NPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIWDTRVGKSALTSFK 317
A W+V+ F GH A V L +P+E + F S D +WD R G+ + +F+
Sbjct: 179 ALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-CVQAFE 237
Query: 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351
H +DVN + + ASGSDD T ++DLR
Sbjct: 238 THESDVNSVRYYPSGDAF-ASGSDDATCRLYDLR 270
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 25/169 (14%)
Query: 185 ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG- 243
+D+G V++W+L E+ET++ + KF ++ + + +++G
Sbjct: 100 SDSGAVELWELD-------ENETLI------------VSKFCKYEHDDIVSTVSVLSSGT 140
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303
+ V+G + CI +W D V + + H+A V + SP + VF SCS D I +
Sbjct: 141 QAVSGSKDICIKVW----DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196
Query: 304 WDTRVGKSA-LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351
WDTR K A A ++W+ S + G ++GT S+ D +
Sbjct: 197 WDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 9/140 (6%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
++ Q L + H + + +P ++ ++ I LW+ T P IG
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD-----TRCPKPASQIGC 210
Query: 276 SAS---VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLA 332
SA L W P + +VF +G +++ DT+ L+S H+ V + ++ +
Sbjct: 211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-AVHSQCVTGLVFSPHS 269
Query: 333 SCLLASGSDDGTFSIHDLRL 352
LAS S+D + ++ D L
Sbjct: 270 VPFLASLSEDCSLAVLDSSL 289
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT---EPDVFASC 295
P R +G C++ I LW+ D W + HS V D+ W+P+ ASC
Sbjct: 176 PNYIKRFASGGCDNLIKLWKEEEDGQWK-EEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234
Query: 296 SVDGHIAIWDTRVGKSALTSFK---AHNADVNVISWNRLASCLLASGSDD 342
S DG + IW S S K N V +SW+ A+ L SG D+
Sbjct: 235 SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN 284
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 219 QSPLVKFGGHKDEGYAIDW-NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA 277
Q + GH+ + + W +P+ L + + + +W + TW + GH +
Sbjct: 47 QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE-ENGTWE-KSHEHAGHDS 104
Query: 278 SVEDLQWSPTEPDVFASC-SVDGHIAIWDTRVGKSALTSFK---AHNADVNVISW 328
SV + W+P + + +C S DG I++ T G+ K AH N +SW
Sbjct: 105 SVNSVCWAPHDYGLILACGSSDGAISLL-TYTGEGQWEVKKINNAHTIGCNAVSW 158
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 6/131 (4%)
Query: 215 QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI- 273
+V PLV GH I W P + +G + + +WE P I
Sbjct: 69 RVDKNVPLVX--GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 274 --GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT-SFKAHNADVNVISWNR 330
GH+ V + W PT +V S D I +WD G + LT H + + W+R
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 331 LASCLLASGSD 341
+ + S D
Sbjct: 187 DGALICTSCRD 197
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS-PTEPDVFASCSVDGHIA 302
RL T + I ++E + +D GH V + W+ P + ASCS DG +
Sbjct: 25 RLATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 303 IWDTRVGK-SALTSFKAHNADVNVISWN-RLASCLLASGSDDGTFSIHDLR 351
IW G+ S + H+A VN + W LL S DG S+ + +
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVDGHI 301
+ VTG ++ + +W+ SDA V + GHS V D+ WSPT AS S D
Sbjct: 174 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233
Query: 302 AIW 304
IW
Sbjct: 234 IIW 236
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS-PTEPDVFASCSVDGHIA 302
RL T + I ++E + +D GH V + W+ P + ASCS DG +
Sbjct: 23 RLATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 303 IWDTRVGK-SALTSFKAHNADVNVISWN-RLASCLLASGSDDGTFSIHDLR 351
IW G+ S + H+A VN + W LL S DG S+ + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVDGHI 301
+ VTG ++ + +W+ SDA V + GHS V D+ WSPT AS S D
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 302 AIW--DTRVG--KSALTSFKAHNADVNVISWNRLASCLLASGSDD 342
IW D G K L + + SW+ + L SG D+
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS-PTEPDVFASCSVDGHIA 302
RL T + I ++E + +D GH V + W+ P + ASCS DG +
Sbjct: 23 RLATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 303 IWDTRVGK-SALTSFKAHNADVNVISWN-RLASCLLASGSDDGTFSIHDLR 351
IW G+ S + H+A VN + W LL S DG S+ + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVDGHI 301
+ VTG ++ + +W+ SDA V + GHS V D+ WSPT AS S D
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 302 AIW 304
IW
Sbjct: 232 IIW 234
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 6/131 (4%)
Query: 215 QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI- 273
+V PLV GH I W P + +G + + +WE P I
Sbjct: 69 RVDKNVPLV--CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 274 --GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT-SFKAHNADVNVISWNR 330
GH+ V + W PT +V S D I +WD G + LT H + + W+R
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 331 LASCLLASGSD 341
+ + S D
Sbjct: 187 DGALICTSCRD 197
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNV----DPNPFIGHSASVEDLQWSPTEPD 290
+DW ++G ++ ++ +YLW +S + P +I A ++ E +
Sbjct: 122 VDW---SSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-------EGN 171
Query: 291 VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350
A + + +WD + K L + +H+A V +SWN S +L+SGS G HD+
Sbjct: 172 YLAVGTSSAEVQLWDVQQQKR-LRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDV 227
Query: 351 RL 352
R+
Sbjct: 228 RV 229
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 26/160 (16%)
Query: 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK 229
R+ +++ N +I +S + +GH+ D+R +AE + GH
Sbjct: 202 RVGSLSWNSYILSSGSRSGHIHHHDVR-----VAEHH---------------VATLSGHS 241
Query: 230 DEGYAIDWNPITTGR-LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE 288
E + W P GR L +G ++ + +W A V F H +V+ + W P +
Sbjct: 242 QEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 289 PDVFAS--CSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326
+V A+ + D HI IW+ G + L++ AH+ +++
Sbjct: 300 SNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAHSQVCSIL 338
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
L G ++ + LW D HSA V L W+ + +S S GHI
Sbjct: 173 LAVGTSSAEVQLW----DVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHH 225
Query: 305 DTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDD 342
D RV + + + H+ +V + W L + G+D+
Sbjct: 226 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 263
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTSFKAHNADVNVISWNR 330
GHS V L+W+P + AS D + +W + G+ L +F H V ++W
Sbjct: 239 GHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 331 LASCLLASG 339
S +LA+G
Sbjct: 298 WQSNVLATG 306
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNV----DPNPFIGHSASVEDLQWSPTEPD 290
+DW ++G ++ ++ +YLW +S + P +I A ++ E +
Sbjct: 111 VDW---SSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-------EGN 160
Query: 291 VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350
A + + +WD + K L + +H+A V +SWN S +L+SGS G HD+
Sbjct: 161 YLAVGTSSAEVQLWDVQQQKR-LRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDV 216
Query: 351 RL 352
R+
Sbjct: 217 RV 218
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 26/160 (16%)
Query: 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK 229
R+ +++ N +I +S + +GH+ D+R +AE + GH
Sbjct: 191 RVGSLSWNSYILSSGSRSGHIHHHDVR-----VAEHH---------------VATLSGHS 230
Query: 230 DEGYAIDWNPITTGR-LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE 288
E + W P GR L +G ++ + +W A V F H +V+ + W P +
Sbjct: 231 QEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 289 PDVFAS--CSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326
+V A+ + D HI IW+ G + L++ AH+ +++
Sbjct: 289 SNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAHSQVCSIL 327
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
L G ++ + LW D HSA V L W+ + +S S GHI
Sbjct: 162 LAVGTSSAEVQLW----DVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHH 214
Query: 305 DTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDD 342
D RV + + + H+ +V + W L + G+D+
Sbjct: 215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 252
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTSFKAHNADVNVISWNR 330
GHS V L+W+P + AS D + +W + G+ L +F H V ++W
Sbjct: 228 GHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 331 LASCLLASG 339
S +LA+G
Sbjct: 287 WQSNVLATG 295
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS-PTEPDVFASCSVDGHIA 302
R+ T + I ++E + +D GH V + W+ P + ASCS DG +
Sbjct: 23 RMATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 303 IWDTRVGK-SALTSFKAHNADVNVISW--NRLASCLLASGSDDGTFSIHDLR 351
IW G+ S + H+A VN + W + LL + S DG S+ + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS-DGKVSVVEFK 131
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVDGHI 301
+ VTG ++ + +W+ SDA V + GHS V D+ WSPT AS S D
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231
Query: 302 AIW--DTRVG--KSALTSFKAHNADVNVISWNRLASCLLASGSDD 342
IW D G K L + + SW+ + L SG D+
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 226 GGHKDEGYAIDWNPITTGRLVT--GDCNSCIYLWEPASDA---TWNVDPNPFIGHSASVE 280
G H Y I W +T G L T GD ++ +P SD T+++ + HS V
Sbjct: 249 GFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN 307
Query: 281 DLQWSPTEPDVFASCSVDGHIAIW 304
+ W+P EP + ASCS DG +A W
Sbjct: 308 CVAWNPKEPGLLASCSDDGEVAFW 331
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 32/201 (15%)
Query: 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226
CV+ + + TQ D HV VW L A A + V + +
Sbjct: 142 CVSVLNSHTQ---------DVKHV-VWHPSQELLASASYDDTVKLYREEEDDWVCCATLE 191
Query: 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE------------PASDATWNVDPNPFIG 274
GH+ +++ ++P + RL + + + +W SD +W
Sbjct: 192 GHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250
Query: 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIW------DTRVGKSALTSF--KAHNADVNVI 326
HS ++ D+ W + +C D I ++ D + +LT+ +AH+ DVN +
Sbjct: 251 HSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 327 SWNRLASCLLASGSDDGTFSI 347
+WN LLAS SDDG +
Sbjct: 310 AWNPKEPGLLASCSDDGEVAF 330
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 282 LQWSPTEPDVFASCSVDGHIAIW----DTRVGKSALTSFKAHNADVNVISWNRLASCLLA 337
L W+P + ASC D I IW D+ + KS L+ + H V ++W+ + LA
Sbjct: 22 LAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLS--EGHQRTVRKVAWSPCGN-YLA 77
Query: 338 SGSDDGTFSI 347
S S D T I
Sbjct: 78 SASFDATTCI 87
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 26/160 (16%)
Query: 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK 229
R+ +++ N +I +S + +GH+ D+R +AE + GH
Sbjct: 111 RVGSLSWNSYILSSGSRSGHIHHHDVR-----VAEHH---------------VATLSGHS 150
Query: 230 DEGYAIDWNPITTGR-LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE 288
E + W P GR L +G ++ + +W A V F H +V+ + W P +
Sbjct: 151 QEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 289 PDVFAS--CSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326
+V A+ + D HI IW+ G + L++ AH+ +++
Sbjct: 209 SNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAHSQVCSIL 247
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNV----DPNPFIGHSASVEDLQWSPTEPD 290
+DW ++G ++ ++ +YLW +S + P +I A ++ E +
Sbjct: 31 VDW---SSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-------EGN 80
Query: 291 VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350
A + + +WD + K L + +H+A V +SWN S +L+SGS G HD+
Sbjct: 81 YLAVGTSSAEVQLWDVQQQKR-LRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDV 136
Query: 351 RL 352
R+
Sbjct: 137 RV 138
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
L G ++ + LW D HSA V L W+ + +S S GHI
Sbjct: 82 LAVGTSSAEVQLW----DVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHH 134
Query: 305 DTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDD 342
D RV + + + H+ +V + W L + G+D+
Sbjct: 135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 172
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTSFKAHNADVNVISWNR 330
GHS V L+W+P + AS D + +W + G+ L +F H V ++W
Sbjct: 148 GHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206
Query: 331 LASCLLASG 339
S +LA+G
Sbjct: 207 WQSNVLATG 215
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASC 334
H+ V L +P + +F S + D +WD R G T F H +D+N I + +
Sbjct: 183 HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNA 240
Query: 335 LLASGSDDGTFSIHDLR 351
A+GSDD T + DLR
Sbjct: 241 F-ATGSDDATCRLFDLR 256
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASC 334
H+ V L +P + +F S + D +WD R G T F H +D+N I + +
Sbjct: 194 HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNA 251
Query: 335 LLASGSDDGTFSIHDLR 351
A+GSDD T + DLR
Sbjct: 252 F-ATGSDDATCRLFDLR 267
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASC 334
H+ V L +P + +F S + D +WD R G T F H +D+N I + +
Sbjct: 183 HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNA 240
Query: 335 LLASGSDDGTFSIHDLR 351
A+GSDD T + DLR
Sbjct: 241 F-ATGSDDATCRLFDLR 256
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASC 334
H+ V L +P + +F S + D +WD R G T F H +D+N I + +
Sbjct: 183 HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNA 240
Query: 335 LLASGSDDGTFSIHDLR 351
A+GSDD T + DLR
Sbjct: 241 F-ATGSDDATCRLFDLR 256
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASC 334
H+ V L +P + +F S + D +WD R G T F H +D+N I + +
Sbjct: 183 HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNGNA 240
Query: 335 LLASGSDDGTFSIHDLR 351
A+GSDD T + DLR
Sbjct: 241 F-ATGSDDATCRLFDLR 256
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 270 NPFIGHSASVEDLQWS-PTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNADVNVIS 327
+ GH V + W+ P + ASCS DG + IW G+ S + H+A VN +
Sbjct: 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQ 106
Query: 328 W--NRLASCLLASGSDDGTFSIHDLR 351
W + LL + S DG S+ + +
Sbjct: 107 WAPHEYGPXLLVASS-DGKVSVVEFK 131
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVDGHI 301
+ VTG ++ + +W+ SDA V + GHS V D+ WSPT AS S D
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTC 231
Query: 302 AIW--DTRVG--KSALTSFKAHNADVNVISWNRLASCLLASGSDD 342
IW D G K L + + SW+ + L SG D+
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
L TG + + LW D N GH+ SV ++SP + ++ ASCS DG + +W
Sbjct: 723 LATGSNDFFLKLW----DLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLW 777
Query: 305 DTR 307
D R
Sbjct: 778 DVR 780
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 287 TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW-NRLASCLLASGSDDGTF 345
++ A+CS D + IWD+ GK T + H+ VN + N+ LLA+GS+D
Sbjct: 674 SDDSYIATCSADKKVKIWDSATGKLVHT-YDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 346 SIHDLRLLKVR 356
+ DL + R
Sbjct: 733 KLWDLNQKECR 743
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
L TG + + LW D N GH+ SV ++SP + ++ ASCS DG + +W
Sbjct: 716 LATGSNDFFLKLW----DLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLW 770
Query: 305 DTR 307
D R
Sbjct: 771 DVR 773
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 287 TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW-NRLASCLLASGSDDGTF 345
++ A+CS D + IWD+ GK T + H+ VN + N+ LLA+GS+D
Sbjct: 667 SDDSYIATCSADKKVKIWDSATGKLVHT-YDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 346 SIHDLRLLKVR 356
+ DL + R
Sbjct: 726 KLWDLNQKECR 736
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303
+ V+G + + +W+ + A + HS+ V + P + +F SC DG I +
Sbjct: 153 QAVSGGKDFSVKVWDLSQKAVLK----SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208
Query: 304 WDTRVGKSAL-TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351
WDTR K A F A + ++W+ A G + G S+ +++
Sbjct: 209 WDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD 341
+ W P + D FA G++++ + + SA TS H+ ++ ++++ +S LAS S+
Sbjct: 232 VTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS-AVHSQNITGLAYSYHSSPFLASISE 290
Query: 342 DGTFSIHDLRLLKV 355
D T ++ D +V
Sbjct: 291 DCTVAVLDADFSEV 304
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 38/180 (21%)
Query: 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239
I +SW T +++WDLR+ + +F GH+ E Y++ ++P
Sbjct: 92 ISSSWDKT--LRLWDLRTG---------------------TTYKRFVGHQSEVYSVAFSP 128
Query: 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDV-------- 291
++++ I LW + ++ HS V +++SP
Sbjct: 129 -DNRQILSAGAEREIKLWNILGECKFSSAEKE--NHSDWVSCVRYSPIMKSANKVQPFAP 185
Query: 292 -FASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350
FAS DG + +W+T +FKAH ++VN +S + +A+G D I D+
Sbjct: 186 YFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDI 242
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 234 AIDWNPITTGRLVTGDCNSCIYLWE---PASDATWNVDPNPFIG------HSASVEDLQW 284
+D P+ +++G + I L++ + + + IG H SVE +QW
Sbjct: 48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW 107
Query: 285 SPTEPDVFASCSVDGHIAIWDTRVGKSA------LTSFKAHNADVNVISWNRLASCLLAS 338
P + +F S S D + +WDT ++A T + H + V+ CL+A
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVST------KHCLVAV 161
Query: 339 GSDDGTFSIHDLR 351
G+ + DL+
Sbjct: 162 GTRGPKVQLCDLK 174
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321
GH + + WSP + A+ S D + +WD R L + HN
Sbjct: 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
L TG + + LW D N GH+ SV ++SP + + ASCS DG + +W
Sbjct: 722 LATGSSDCFLKLW----DLNQKECRNTMFGHTNSVNHCRFSPDDK-LLASCSADGTLKLW 776
Query: 305 D 305
D
Sbjct: 777 D 777
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 287 TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW-NRLASCLLASGSDDGTF 345
T+ A+CSVD + IW++ G+ T + H+ VN + N LLA+GS D
Sbjct: 673 TDDRFIATCSVDKKVKIWNSMTGELVHT-YDEHSEQVNCCHFTNSSHHLLLATGSSDCFL 731
Query: 346 SIHDLRLLKVR 356
+ DL + R
Sbjct: 732 KLWDLNQKECR 742
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 15/144 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLW------EPASDATWNVDPNPFIGH 275
+ +F H + +N L +G N I++W E S+ T + P +
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT-PLTPGQSMSS 164
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL-TSFKAHNADV----NVISWNR 330
V L W+ + VFAS +IWD + K + S+ + N+ + +V+ W+
Sbjct: 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224
Query: 331 LASCLL--ASGSD-DGTFSIHDLR 351
S + A+GSD D + I DLR
Sbjct: 225 KNSTRVATATGSDNDPSILIWDLR 248
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 235 IDW---NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDV 291
+DW N I G L G +Y A++A ++ F HS+SV+ ++++ + +V
Sbjct: 73 LDWSHNNKIIAGALDNGSLE--LYSTNEANNAINSMAR--FSNHSSSVKTVKFNAKQDNV 128
Query: 292 FASCSVDGHIAIWDTR------VGKSALTSFKAHNADVNVIS--WNRLASCLLASGSDDG 343
AS +G I IWD + LT ++ ++ VIS WN+ + + AS
Sbjct: 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188
Query: 344 TFSIHDLRLLK 354
SI DL+ K
Sbjct: 189 FASIWDLKAKK 199
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 21/182 (11%)
Query: 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238
H+ AS + +WDL+ A+ E I +S SP G K + ++W+
Sbjct: 179 HVFASAGSSNFASIWDLK------AKKEVI------HLSYTSP---NSGIKQQLSVVEWH 223
Query: 239 PITTGRLVTG---DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC 295
P + R+ T D + I +W+ + T N GH + L W + + S
Sbjct: 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ--GHQKGILSLDWCHQDEHLLLSS 281
Query: 296 SVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355
D + +W+ + L+ F A + A L A S D + L+ L
Sbjct: 282 GRDNTVLLWNPESAEQ-LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340
Query: 356 RL 357
L
Sbjct: 341 TL 342
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
+V F H D +I +P T +++G + + LW ++ W ++ F GH V
Sbjct: 90 VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENN--WALE-QTFEGHEHFVMC 145
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASC-LLASGS 340
+ ++P +P FAS +D + +W T VN + + L + + S
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 341 DDGTFSIHDLR 351
DD T I D +
Sbjct: 206 DDLTIKIWDYQ 216
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 12/136 (8%)
Query: 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI--GHSASVEDL 282
F GH+ + +NP +G + + +W PN + G V +
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQERGVNYV 190
Query: 283 QWSPTEPD--VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGS 340
+ P PD + S D I IWD + KS + + + H ++V+ ++ ++ SGS
Sbjct: 191 DYYPL-PDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLPIII-SGS 247
Query: 341 DDGTFSIHDLRLLKVR 356
+DGT I + KV
Sbjct: 248 EDGTLKIWNSSTYKVE 263
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
+V F H D +I +P T +++G + + LW ++ W ++ F GH V
Sbjct: 90 VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENN--WALE-QTFEGHEHFVMC 145
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASC-LLASGS 340
+ ++P +P FAS +D + +W T VN + + L + + S
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 341 DDGTFSIHDLR 351
DD T I D +
Sbjct: 206 DDLTIKIWDYQ 216
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 12/136 (8%)
Query: 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI--GHSASVEDL 282
F GH+ + +NP +G + + +W PN + G V +
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQERGVNYV 190
Query: 283 QWSPTEPD--VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGS 340
+ P PD + S D I IWD + KS + + + H ++V+ ++ ++ SGS
Sbjct: 191 DYYPL-PDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLPIII-SGS 247
Query: 341 DDGTFSIHDLRLLKVR 356
+DGT I + KV
Sbjct: 248 EDGTLKIWNSSTYKVE 263
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 215 QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG 274
Q++ ++P K GH +++N T L++ + + +W + + N F G
Sbjct: 233 QITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGNGNS----QNCFYG 287
Query: 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307
HS S+ W D SCS+DG + +W +
Sbjct: 288 HSQSIVSASW--VGDDKVISCSMDGSVRLWSLK 318
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTF 345
P + V A+ DG ++IWD R G ++ KAH A++ + ++ L + S+DG+
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSL 305
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 22/119 (18%)
Query: 188 GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247
G +++WD R N ++ ++ G P + +D +P + T
Sbjct: 212 GQLKIWDFRQQGNEPSQILSLTGDRVPL-----------------HCVDRHPNQQHVVAT 254
Query: 248 GDCNSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305
G + + +W D P + H A + ++ + P+ P+ +CS DG + WD
Sbjct: 255 GGQDGMLSIW----DVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
+V F H D +I +P T +++G + + LW ++ W ++ F GH V
Sbjct: 90 VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENN--WALE-QTFEGHEHFVMC 145
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASC-LLASGS 340
+ ++P +P FAS +D + +W T VN + + L + + S
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 341 DDGTFSIHDLR 351
DD T I D +
Sbjct: 206 DDLTIKIWDYQ 216
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 12/136 (8%)
Query: 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI--GHSASVEDL 282
F GH+ + +NP +G + + +W PN + G V +
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQERGVNYV 190
Query: 283 QWSPTEPD--VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGS 340
+ P PD + S D I IWD + KS + + + H ++V+ ++ ++ SGS
Sbjct: 191 DYYPL-PDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLPIII-SGS 247
Query: 341 DDGTFSIHDLRLLKVR 356
+DGT I + KV
Sbjct: 248 EDGTLKIWNSSTYKVE 263
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SALTSFKAHNADVNVISWN 329
++GH ++ +L++ P +P++ S S D + +W+ + + + H +V ++
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 330 RLASCLLASGSDDGTFSIHDLRLLKV 355
L +++ G D H L+L ++
Sbjct: 207 LLGEKIMSCGMD------HSLKLWRI 226
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
+V F H D +I +P T +++G + + LW ++ W ++ F GH V
Sbjct: 90 VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENN--WALE-QTFEGHEHFVMC 145
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASC-LLASGS 340
+ ++P +P FAS +D + +W T VN + + L + + S
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 341 DDGTFSIHDLR 351
DD T I D +
Sbjct: 206 DDLTIKIWDYQ 216
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 12/136 (8%)
Query: 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI--GHSASVEDL 282
F GH+ + +NP +G + + +W PN + G V +
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQERGVNYV 190
Query: 283 QWSPTEPD--VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGS 340
+ P PD + S D I IWD + KS + + + H ++V+ ++ ++ SGS
Sbjct: 191 DYYPL-PDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLPIII-SGS 247
Query: 341 DDGTFSIHDLRLLKVR 356
+DGT I + KV
Sbjct: 248 EDGTLKIWNSSTYKVE 263
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SALTSFKAHNADVNVISWN 329
++GH ++ +L++ P +P++ S S D + +W+ + + + H +V ++
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 330 RLASCLLASGSDDGTFSIHDLRLLKV 355
L +++ G D H L+L ++
Sbjct: 166 LLGEKIMSCGMD------HSLKLWRI 185
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 19/146 (13%)
Query: 191 QVWDLRSHLNALAESETIVGQGAPQVSNQSPL---------VKFGGHKDEGYAIDWNPIT 241
+V +L S LN E T G P + P GH+ + ++P+
Sbjct: 64 KVMELESKLNEAKEEFT---SGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120
Query: 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301
+ +V+ ++ I +W+ + GH+ SV+D+ + + + ASCS D I
Sbjct: 121 SV-MVSASEDATIKVWDYETGDF----ERTLKGHTDSVQDISFDHS-GKLLASCSADMTI 174
Query: 302 AIWDTRVGKSALTSFKAHNADVNVIS 327
+WD + G + + H+ +V+ +S
Sbjct: 175 KLWDFQ-GFECIRTMHGHDHNVSSVS 199
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SALTSFKAHNADVNVISWN 329
++GH ++ +L++ P +P++ S S D + +W+ + + + H +V ++
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 330 RLASCLLASGSDDGTFSIHDLRLLKV 355
L +++ G D H L+L ++
Sbjct: 170 LLGEKIMSCGMD------HSLKLWRI 189
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SALTSFKAHNADVNVISWN 329
++GH ++ +L++ P +P++ S S D + +W+ + + + H +V ++
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 330 RLASCLLASGSDDGTFSIHDLRLLKV 355
L +++ G D H L+L ++
Sbjct: 171 LLGEKIMSCGMD------HSLKLWRI 190
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SALTSFKAHNADVNVISWN 329
++GH ++ +L++ P +P++ S S D + +W+ + + + H +V ++
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 330 RLASCLLASGSDDGTFSIHDLRLLKV 355
L +++ G D H L+L ++
Sbjct: 170 LLGEKIMSCGMD------HSLKLWRI 189
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLAS 333
GH A V L W+ V +S S G I D R+ + + + H+++V ++W R
Sbjct: 174 GHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW-RSDG 229
Query: 334 CLLASGSDDGTFSIHDLR 351
LASG +D I D R
Sbjct: 230 LQLASGGNDNVVQIWDAR 247
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 254 IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSA 312
+Y+W S + V S V ++WS F S + +G + I+D ++
Sbjct: 115 VYVWNADSGS---VSALAETDESTYVASVKWS--HDGSFLSVGLGNGLVDIYDVE-SQTK 168
Query: 313 LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352
L + H A V +SWNR +L+SGS G HD+R+
Sbjct: 169 LRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRI 205
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLAS 333
GHS+ V L W ++ AS D + IWD R T HNA V ++W S
Sbjct: 215 GHSSEVCGLAWR-SDGLQLASGGNDNVVQIWDARSSIPKFTKTN-HNAAVKAVAWCPWQS 272
Query: 334 CLLASGSDDGTFSIH 348
LLA+G IH
Sbjct: 273 NLLATGGGTMDKQIH 287
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 45/144 (31%)
Query: 190 VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT-- 247
VQ+WD RS + + +N + VK A+ W P + L T
Sbjct: 241 VQIWDARSSIPKFTK------------TNHNAAVK---------AVAWCPWQSNLLATGG 279
Query: 248 GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIW-- 304
G + I+ W A+ A N + + V L WSP ++ ++ D +++IW
Sbjct: 280 GTMDKQIHFWNAATGARVNT-----VDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334
Query: 305 --------------DTRVGKSALT 314
DTRV SAL+
Sbjct: 335 SSSGLTKQVDIPAHDTRVLYSALS 358
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Query: 228 HKDEGYAIDW---NPITTGRLVTGDCNSCIYLW---EPASDATWNVDPNPFIGHSASVED 281
H D +++ W + +VTG + + +W + D W+++ GH V
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE-----GHQLGVVS 85
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD 341
+ S T P + AS S+D HI +WD GK + S A D ++++ S LA+G+
Sbjct: 86 VDISHTLP-IAASSSLDAHIRLWDLENGKQ-IKSIDAGPVDAWTLAFSP-DSQYLATGTH 142
Query: 342 DGTFSI 347
G +I
Sbjct: 143 VGKVNI 148
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD 341
+ +SP + AS ++DG I I+D GK L + + H + ++++ S LL + SD
Sbjct: 170 IAYSP-DGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSP-DSQLLVTASD 226
Query: 342 DGTFSIHDLR 351
DG I+D++
Sbjct: 227 DGYIKIYDVQ 236
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 154
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 155 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 213
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 214 LAATLDN 220
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 288
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 289 ISTACHPTE-NIIASAALENDKTIKLWKS 316
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 151
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 152 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 211 LAATLDN 217
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 118 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 172
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 173 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 231
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 232 LAATLDN 238
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 251 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 306
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 307 ISTACHPTE-NIIASAALENDKTIKLWKS 334
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 111 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 165
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 166 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 224
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 225 LAATLDN 231
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 299
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 300 ISTACHPTE-NIIASAALENDKTIKLWKS 327
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 90 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 144
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 145 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 203
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 204 LAATLDN 210
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 278
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 279 ISTACHPTE-NIIASAALENDKTIKLWKS 306
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 116 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 170
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 171 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 229
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 230 LAATLDN 236
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 304
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 305 ISTACHPTE-NIIASAALENDKTIKLWKS 332
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 151
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 152 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 211 LAATLDN 217
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 12/137 (8%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTLP----AH 151
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 152 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 336 LASGSDDGTFSIHDLRL 352
LA+ D+ DL+L
Sbjct: 211 LAATLDN------DLKL 221
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI----VQKLQGHTDVV 285
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 286 ISTACHPTE-NIIASAALENDKTIKLWKS 313
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 93 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 147
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 148 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 206
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 207 LAATLDN 213
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 281
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 282 ISTACHPTE-NIIASAALENDKTIKLWKS 309
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 154
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 155 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 213
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 214 LAATLDN 220
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 288
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 289 ISTACHPTE-NIIASAALENDKTIKLWKS 316
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 94 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 148
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 149 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 207
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 208 LAATLDN 214
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 282
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 283 ISTACHPTE-NIIASAALENDKTIKLWKS 310
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 95 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 149
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 150 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 208
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 209 LAATLDN 215
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 283
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 284 ISTACHPTE-NIIASAALENDKTIKLWKS 311
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
+ N+ ++ GH+ + Y++D+ P + +LV+G + + +W+ +
Sbjct: 152 IENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQ---------CSL 201
Query: 276 SASVED----LQWSPTEPDVFASCSVDGHIAIWDTRVG 309
+ S+ED + SP + A+ S+D + +WD+ G
Sbjct: 202 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
L TG + I +W+ + + GH + L + P+ D S S D + IW
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMI----LQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIW 192
Query: 305 DTRVGKSALT 314
D R G+ +LT
Sbjct: 193 DLRTGQCSLT 202
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 99 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 153
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 154 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 212
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 213 LAATLDN 219
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 287
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 288 ISTACHPTE-NIIASAALENDKTIKLWKS 315
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 154
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 155 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 213
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 214 LAATLDN 220
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 288
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 289 ISTACHPTE-NIIASAALENDKTIKLWKS 316
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 151
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 152 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 211 LAATLDN 217
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 285
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 286 ISTACHPTE-NIIASAALENDKTIKLWKS 313
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 94 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 148
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 149 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 207
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 208 LAATLDN 214
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 282
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 283 ISTACHPTE-NIIASAALENDKTIKLWKS 310
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTLP----AH 151
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
S V + ++ + + S S DG IWDT G+ T N V+ + ++ +
Sbjct: 152 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI 210
Query: 336 LASGSDD 342
LA+ D+
Sbjct: 211 LAATLDN 217
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI----VQKLQGHTDVV 285
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 286 ISTACHPTE-NIIASAALENDKTIKLWKS 313
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 26/162 (16%)
Query: 203 AESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI-DWNPITTGRLVTGDCNSCIYLWEP-- 259
SET G Q +Q + G +D I D N + R++TG S + L
Sbjct: 128 CRSETSKGVYCLQYDDQKIV---SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 184
Query: 260 -----ASDAT---WNVDP----NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307
+SD+T W+V+ N I H +V L+++ + +CS D IA+WD
Sbjct: 185 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMA 241
Query: 308 --VGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSI 347
+ H A VNV+ ++ + S S D T +
Sbjct: 242 SPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKV 280
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP---------DVFASC 295
+ GD I L++ S V + + ++ + + W P E D+ A+
Sbjct: 503 IAAGDVXGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 559
Query: 296 SVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD 341
S+D +I I+ + + + AH VN + W S L++SG+D
Sbjct: 560 SLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLW-ETPSTLVSSGAD 604
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 40/225 (17%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNAL-----------------AES 205
+HQ V + + + + CAS G+V++WD + L +ES
Sbjct: 59 SHQTTVAK---TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES 115
Query: 206 ETI--VGQGAPQVSN------QSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLW 257
+ I VG+G + + + G ++D+ P R+++G ++ + ++
Sbjct: 116 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 175
Query: 258 EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD----TRVGKSAL 313
E + F H+ V ++++P + +FAS DG I +++ T+ G
Sbjct: 176 EGPPFKF----KSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFED 230
Query: 314 TSFK--AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356
S K AH+ V ++W+ + +AS S D T I ++ LKV
Sbjct: 231 DSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVE 274
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP---------DVFASC 295
+ GD I L++ S V + + ++ + + W P E D+ A+
Sbjct: 503 IAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 559
Query: 296 SVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD 341
S+D +I I+ + + + AH VN + W S L++SG+D
Sbjct: 560 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-ETPSTLVSSGAD 604
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 279 VEDLQWSPTEPDVFASCSVDGHIAI 303
V D++W+PT P + A C DG IA+
Sbjct: 152 VIDMKWNPTVPSMVAVCLADGSIAV 176
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 279 VEDLQWSPTEPDVFASCSVDGHIAI 303
V D++W+PT P + A C DG IA+
Sbjct: 152 VIDMKWNPTVPSMVAVCLADGSIAV 176
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 279 VEDLQWSPTEPDVFASCSVDGHIAI 303
V D++W+PT P + A C DG IA+
Sbjct: 152 VIDMKWNPTVPSMVAVCLADGSIAV 176
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314
FIGH++++ L SP + + AS DG I +W+ K+ T
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAAKKAXYT 233
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314
FIGH++++ L SP + + AS DG I +W+ K+ T
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYT 233
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314
FIGH++++ L SP + + AS DG I +W+ K+ T
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYT 233
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314
FIGH++++ L SP + + AS DG I +W+ K+ T
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYT 233
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314
FIGH++++ L SP + + AS DG I +W+ K+ T
Sbjct: 186 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYT 227
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314
FIGH++++ L SP + + AS DG I +W+ K+ T
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYT 233
>pdb|2O8I|A Chain A, Crystal Structure Of Protein Atu2327 From Agrobacterium
Tumefaciens Str. C58
Length = 165
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 289 PDVFASCSVDGH--IAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
P + A ++ H ++ +DTR+ +A F V I+W RLAS L
Sbjct: 114 PFIIAVKGLNRHDILSAFDTRIDNNAAQEFATATGQVEKIAWLRLASXL 162
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 268 DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320
+P IGH A+V D+ +V S S+DG I +W+ G + T + N
Sbjct: 173 NPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTFNRKEN 224
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 268 DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320
+P IGH A+V D+ +V S S+DG I +W+ G + T + N
Sbjct: 170 NPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTFNRKEN 221
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 218 NQSPLVKFGGHKDEGYAIDWNPITTG-RLVTGDCNSCIYLWEPASDATWNVDPNPFI--- 273
N+SP+ + + Y + G L+ G S + +W+ A+ P P I
Sbjct: 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA-------PTPRIKAE 136
Query: 274 --GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRL 331
+ + L SP F+ CS DG+IA+WD ++ + F+ H + I +
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCS-DGNIAVWDLH-NQTLVRQFQGHTDGASCIDISND 194
Query: 332 ASCLLASGSDDGTFSIHDLR 351
+ L G D+ T DLR
Sbjct: 195 GTKLWTGGLDN-TVRSWDLR 213
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRV-GKSALTSFKAHNADVNVISWNRLASCLLA 337
V L+W PT P A S G I +WD V K++ + + +N+ + L
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 134
Query: 338 SGSDDGTFSIHDL 350
S G ++ D
Sbjct: 135 VSSIRGATTLRDF 147
>pdb|1TDQ|B Chain B, Structural Basis For The Interactions Between Tenascins
And The C-Type Lectin Domains From Lecticans: Evidence
For A Cross-Linking Role For Tenascins
Length = 130
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 251 NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307
N+ Y W +D T D GHS E +W P +PD F + D + IW R
Sbjct: 57 NAQDYQWIGLNDRTIEGDFRWSDGHSLQFE--KWRPNQPDNFFATGEDCVVMIWHER 111
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRV-GKSALTSFKAHNADVNVISWNRLASCLLA 337
V L+W PT P A S G I +WD V K++ + + +N+ + L
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135
Query: 338 SGSDDGTFSIHDL 350
S G ++ D
Sbjct: 136 VSSIRGATTLRDF 148
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIW-----DTRVG--KSALTSFKAHNADVNVI 326
GH+ V + +P PD+ S S D I +W +T G + AL +DV +
Sbjct: 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 95
Query: 327 SWNRLASCLLASGSDDGTFSIHDL 350
S + A SGS DGT + DL
Sbjct: 96 SDGQFA----LSGSWDGTLRLWDL 115
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIW-----DTRVG--KSALTSFKAHNADVNVI 326
GH+ V + +P PD+ S S D I +W +T G + AL +DV +
Sbjct: 13 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 72
Query: 327 SWNRLASCLLASGSDDGTFSIHDL 350
S + A SGS DGT + DL
Sbjct: 73 SDGQFA----LSGSWDGTLRLWDL 92
>pdb|2QQW|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D23a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC 295
+W G ++ Y W P A W N HS S + + W P P +F S
Sbjct: 15 NWMNAPNGPMIYKGIYHLFYQWNPKG-AVWG---NIVWAHSTSTDLINWDPHPPAIFPSA 70
Query: 296 SVD 298
D
Sbjct: 71 PFD 73
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA--DVNVISWNRLASCLLASG 339
L W PT P A S G I +W+ + K T K A + + +N L + +
Sbjct: 126 LAWHPTHPSTVAVGSKGGDIMLWNFGI-KDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 184
Query: 340 SDDGTFSIHDLR 351
S +GT + D +
Sbjct: 185 SMEGTTRLQDFK 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,881,502
Number of Sequences: 62578
Number of extensions: 447992
Number of successful extensions: 1226
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 954
Number of HSP's gapped (non-prelim): 220
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)