Query 018322
Match_columns 358
No_of_seqs 511 out of 3287
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:01:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0302 Ribosome Assembly prot 100.0 1.5E-66 3.2E-71 454.7 24.6 304 29-356 31-337 (440)
2 KOG0264 Nucleosome remodeling 100.0 8.5E-49 1.8E-53 350.9 23.9 288 29-357 15-309 (422)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-31 6.3E-36 236.1 17.5 171 156-355 208-379 (459)
4 KOG0263 Transcription initiati 100.0 1.6E-30 3.5E-35 247.2 22.2 169 157-355 443-611 (707)
5 KOG0277 Peroxisomal targeting 100.0 6.5E-30 1.4E-34 214.3 20.7 179 154-357 49-227 (311)
6 KOG0263 Transcription initiati 100.0 1.4E-29 3E-34 241.0 18.7 205 63-354 448-652 (707)
7 KOG0271 Notchless-like WD40 re 100.0 1.6E-29 3.5E-34 222.5 17.7 165 159-353 109-278 (480)
8 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-29 3.5E-34 225.1 11.3 168 159-355 255-422 (459)
9 KOG0284 Polyadenylation factor 100.0 3.4E-28 7.5E-33 215.8 12.2 204 63-354 93-297 (464)
10 KOG0264 Nucleosome remodeling 100.0 2E-26 4.4E-31 207.2 22.3 180 159-354 171-350 (422)
11 KOG0286 G-protein beta subunit 100.0 2.9E-26 6.3E-31 195.9 21.6 169 163-355 95-263 (343)
12 KOG0271 Notchless-like WD40 re 100.0 9.3E-27 2E-31 205.2 19.2 172 154-354 236-442 (480)
13 KOG0285 Pleiotropic regulator 100.0 2.8E-27 6.1E-32 206.9 15.7 171 156-356 142-312 (460)
14 KOG0273 Beta-transducin family 100.0 1.8E-26 3.9E-31 208.1 21.3 190 157-354 268-485 (524)
15 KOG0279 G protein beta subunit 100.0 1.6E-26 3.4E-31 196.4 19.6 174 154-355 52-226 (315)
16 KOG0277 Peroxisomal targeting 99.9 5.5E-27 1.2E-31 196.8 15.6 169 160-353 99-267 (311)
17 KOG0302 Ribosome Assembly prot 99.9 4.2E-26 9.1E-31 200.8 21.3 270 30-352 71-379 (440)
18 KOG0772 Uncharacterized conser 99.9 1.4E-26 3E-31 210.9 16.2 199 156-357 158-400 (641)
19 KOG0286 G-protein beta subunit 99.9 3.6E-25 7.8E-30 189.2 22.5 228 46-354 76-306 (343)
20 KOG0273 Beta-transducin family 99.9 1.8E-25 4E-30 201.7 21.5 167 154-352 350-524 (524)
21 KOG0284 Polyadenylation factor 99.9 1E-26 2.2E-31 206.5 12.3 202 64-351 136-337 (464)
22 KOG0279 G protein beta subunit 99.9 5.9E-25 1.3E-29 186.8 18.7 178 154-355 4-184 (315)
23 PTZ00421 coronin; Provisional 99.9 1.3E-24 2.8E-29 209.5 23.5 175 161-356 71-250 (493)
24 KOG0640 mRNA cleavage stimulat 99.9 3.4E-25 7.4E-30 190.7 16.3 238 54-355 100-339 (430)
25 KOG0266 WD40 repeat-containing 99.9 2.2E-24 4.8E-29 207.8 23.9 168 161-356 199-369 (456)
26 KOG0270 WD40 repeat-containing 99.9 7.8E-25 1.7E-29 196.5 18.8 238 61-355 168-408 (463)
27 KOG0315 G-protein beta subunit 99.9 2.6E-24 5.7E-29 180.2 20.1 172 158-355 76-292 (311)
28 PTZ00420 coronin; Provisional 99.9 2E-23 4.3E-28 202.5 28.4 178 159-357 68-254 (568)
29 KOG0276 Vesicle coat complex C 99.9 1.7E-24 3.6E-29 201.4 19.4 171 158-355 90-261 (794)
30 KOG0313 Microtubule binding pr 99.9 5E-24 1.1E-28 187.9 19.8 187 162-357 190-382 (423)
31 KOG0291 WD40-repeat-containing 99.9 8.3E-24 1.8E-28 200.4 22.6 218 55-354 295-553 (893)
32 KOG0645 WD40 repeat protein [G 99.9 5E-23 1.1E-27 174.5 24.3 166 162-351 58-225 (312)
33 KOG0313 Microtubule binding pr 99.9 1.5E-23 3.2E-28 184.9 20.4 169 157-353 252-420 (423)
34 PTZ00421 coronin; Provisional 99.9 6.6E-23 1.4E-27 197.6 26.6 211 66-354 75-293 (493)
35 KOG0285 Pleiotropic regulator 99.9 5.6E-24 1.2E-28 186.3 17.1 170 154-354 182-351 (460)
36 KOG0269 WD40 repeat-containing 99.9 1.1E-24 2.4E-29 206.8 11.8 167 166-355 88-254 (839)
37 KOG0266 WD40 repeat-containing 99.9 3.8E-23 8.2E-28 199.3 21.4 173 155-354 148-321 (456)
38 KOG0319 WD40-repeat-containing 99.9 9.1E-24 2E-28 199.8 16.6 161 159-349 457-617 (775)
39 KOG0310 Conserved WD40 repeat- 99.9 1.5E-23 3.3E-28 190.2 16.5 168 159-354 104-271 (487)
40 KOG0265 U5 snRNP-specific prot 99.9 2.2E-23 4.8E-28 178.9 16.1 167 159-354 41-207 (338)
41 KOG0645 WD40 repeat protein [G 99.9 1.7E-22 3.7E-27 171.2 20.4 173 156-351 5-180 (312)
42 KOG0296 Angio-associated migra 99.9 1.3E-22 2.8E-27 178.2 19.6 167 159-355 58-224 (399)
43 KOG0290 Conserved WD40 repeat- 99.9 5.6E-23 1.2E-27 175.7 16.6 239 45-355 82-322 (364)
44 KOG0316 Conserved WD40 repeat- 99.9 6.3E-23 1.4E-27 170.7 16.4 165 159-354 11-176 (307)
45 KOG0315 G-protein beta subunit 99.9 3.8E-22 8.2E-27 167.3 21.0 170 154-353 29-247 (311)
46 KOG0641 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 162.5 23.5 192 154-352 77-304 (350)
47 KOG0319 WD40-repeat-containing 99.9 5.9E-23 1.3E-27 194.4 18.0 176 159-354 405-580 (775)
48 KOG0269 WD40 repeat-containing 99.9 2.3E-23 4.9E-28 198.0 14.9 172 159-356 127-301 (839)
49 KOG0300 WD40 repeat-containing 99.9 7.5E-23 1.6E-27 176.9 14.9 193 156-357 181-392 (481)
50 KOG0293 WD40 repeat-containing 99.9 2.4E-22 5.2E-27 179.0 18.1 234 55-355 200-517 (519)
51 KOG0295 WD40 repeat-containing 99.9 2.3E-22 5.1E-27 176.6 17.7 167 160-355 188-368 (406)
52 KOG0973 Histone transcription 99.9 4.5E-22 9.8E-27 195.8 21.6 235 69-356 16-317 (942)
53 KOG0282 mRNA splicing factor [ 99.9 8.2E-24 1.8E-28 191.7 8.7 171 155-353 204-374 (503)
54 KOG0295 WD40 repeat-containing 99.9 6.4E-22 1.4E-26 173.8 20.2 169 154-351 224-406 (406)
55 KOG0281 Beta-TrCP (transducin 99.9 4.7E-23 1E-27 180.0 12.7 224 52-354 165-391 (499)
56 PLN00181 protein SPA1-RELATED; 99.9 2.2E-21 4.8E-26 199.7 27.2 163 163-353 530-692 (793)
57 cd00200 WD40 WD40 domain, foun 99.9 5.2E-21 1.1E-25 170.6 26.3 202 66-354 9-210 (289)
58 KOG0283 WD40 repeat-containing 99.9 1.1E-22 2.4E-27 195.4 16.0 181 163-354 265-484 (712)
59 PLN00181 protein SPA1-RELATED; 99.9 4.1E-21 8.9E-26 197.8 28.5 168 157-353 567-740 (793)
60 KOG0265 U5 snRNP-specific prot 99.9 1E-21 2.2E-26 168.7 19.6 164 161-354 86-249 (338)
61 KOG0276 Vesicle coat complex C 99.9 1.2E-21 2.6E-26 182.4 20.4 173 154-353 44-217 (794)
62 KOG0292 Vesicle coat complex C 99.9 1.3E-21 2.9E-26 188.3 19.8 214 59-354 43-283 (1202)
63 PTZ00420 coronin; Provisional 99.9 1.9E-20 4.1E-25 181.9 27.8 211 66-353 74-295 (568)
64 cd00200 WD40 WD40 domain, foun 99.9 1.7E-20 3.6E-25 167.3 25.5 161 159-349 129-289 (289)
65 KOG0289 mRNA splicing factor [ 99.9 1.4E-21 3E-26 175.2 17.4 169 158-354 254-422 (506)
66 KOG0305 Anaphase promoting com 99.9 1.5E-21 3.2E-26 183.1 18.1 160 164-352 259-462 (484)
67 KOG1332 Vesicle coat complex C 99.9 2.6E-21 5.6E-26 161.9 17.3 177 156-352 47-242 (299)
68 KOG0646 WD40 repeat protein [G 99.9 3.7E-21 8.1E-26 173.9 18.6 204 84-353 88-309 (476)
69 KOG0275 Conserved WD40 repeat- 99.9 2.2E-22 4.7E-27 174.5 9.6 173 159-353 207-380 (508)
70 KOG0640 mRNA cleavage stimulat 99.9 2.9E-21 6.3E-26 166.6 15.5 183 159-352 106-292 (430)
71 KOG0267 Microtubule severing p 99.9 8.6E-23 1.9E-27 192.8 6.6 171 154-354 59-229 (825)
72 KOG4283 Transcription-coupled 99.9 9.4E-21 2E-25 162.5 18.0 170 161-357 97-282 (397)
73 KOG0308 Conserved WD40 repeat- 99.9 2.2E-21 4.7E-26 181.5 15.0 172 159-354 67-246 (735)
74 KOG0305 Anaphase promoting com 99.9 1.1E-20 2.4E-25 177.2 19.7 160 165-354 217-379 (484)
75 KOG0294 WD40 repeat-containing 99.9 2.9E-20 6.3E-25 160.8 19.9 169 159-353 77-283 (362)
76 KOG0318 WD40 repeat stress pro 99.9 6E-20 1.3E-24 168.3 23.0 171 153-355 177-354 (603)
77 KOG0292 Vesicle coat complex C 99.9 2E-21 4.3E-26 187.1 14.0 162 164-355 8-169 (1202)
78 KOG1007 WD repeat protein TSSC 99.9 1.2E-20 2.6E-25 161.4 16.1 215 90-358 27-252 (370)
79 KOG0291 WD40-repeat-containing 99.9 1.3E-19 2.7E-24 172.3 24.4 234 45-353 75-424 (893)
80 KOG0310 Conserved WD40 repeat- 99.9 4.2E-21 9.2E-26 174.4 13.9 166 163-357 66-231 (487)
81 KOG0282 mRNA splicing factor [ 99.9 6.5E-21 1.4E-25 173.0 15.0 169 156-349 249-503 (503)
82 KOG0306 WD40-repeat-containing 99.9 5.8E-20 1.2E-24 174.5 21.8 230 45-352 432-665 (888)
83 KOG0643 Translation initiation 99.9 1.8E-20 3.9E-25 158.8 16.0 170 160-354 5-223 (327)
84 KOG0278 Serine/threonine kinas 99.9 1.6E-20 3.6E-25 157.6 15.3 210 58-355 92-301 (334)
85 KOG0318 WD40 repeat stress pro 99.9 1.4E-19 3E-24 165.8 22.1 188 159-354 53-268 (603)
86 KOG0274 Cdc4 and related F-box 99.9 1.3E-19 2.8E-24 175.4 23.0 162 157-353 241-402 (537)
87 KOG0281 Beta-TrCP (transducin 99.8 2E-21 4.4E-26 169.8 8.8 163 159-356 271-433 (499)
88 KOG1407 WD40 repeat protein [F 99.8 1.2E-19 2.5E-24 153.4 18.5 170 159-354 58-264 (313)
89 KOG0275 Conserved WD40 repeat- 99.8 1.2E-20 2.6E-25 163.7 12.2 160 163-351 261-423 (508)
90 KOG0290 Conserved WD40 repeat- 99.8 7.5E-20 1.6E-24 156.7 16.5 236 60-357 38-280 (364)
91 KOG0316 Conserved WD40 repeat- 99.8 4.1E-19 8.8E-24 148.1 18.8 169 154-354 48-216 (307)
92 KOG0647 mRNA export protein (c 99.8 1.5E-19 3.3E-24 155.5 16.0 121 164-309 26-147 (347)
93 KOG0283 WD40 repeat-containing 99.8 5.5E-19 1.2E-23 170.2 21.2 163 159-352 363-533 (712)
94 KOG0300 WD40 repeat-containing 99.8 3.6E-19 7.8E-24 154.2 17.9 166 159-354 266-431 (481)
95 KOG0303 Actin-binding protein 99.8 1.9E-19 4.2E-24 159.8 16.5 229 55-357 23-255 (472)
96 KOG0643 Translation initiation 99.8 1.7E-19 3.8E-24 152.8 14.8 185 159-350 46-316 (327)
97 KOG0306 WD40-repeat-containing 99.8 4.4E-19 9.6E-24 168.6 19.1 221 58-354 405-625 (888)
98 KOG0308 Conserved WD40 repeat- 99.8 2.8E-19 6E-24 167.6 16.7 176 160-354 112-288 (735)
99 KOG0772 Uncharacterized conser 99.8 4.6E-20 1E-24 168.6 11.2 173 159-355 262-449 (641)
100 KOG4328 WD40 protein [Function 99.8 3.4E-19 7.4E-24 160.9 16.1 172 162-351 183-399 (498)
101 KOG1332 Vesicle coat complex C 99.8 1.6E-19 3.5E-24 151.3 12.7 170 162-353 8-195 (299)
102 PF12265 CAF1C_H4-bd: Histone- 99.8 1.3E-21 2.9E-26 138.7 0.2 69 46-115 2-73 (74)
103 KOG0268 Sof1-like rRNA process 99.8 2.2E-19 4.8E-24 157.9 14.0 210 95-355 80-306 (433)
104 KOG0307 Vesicle coat complex C 99.8 5.1E-20 1.1E-24 182.3 11.2 174 159-354 110-287 (1049)
105 KOG4283 Transcription-coupled 99.8 3.4E-19 7.4E-24 152.9 14.4 179 163-353 41-221 (397)
106 KOG0296 Angio-associated migra 99.8 4E-18 8.6E-23 150.2 21.3 168 157-354 98-266 (399)
107 KOG0274 Cdc4 and related F-box 99.8 1.2E-18 2.6E-23 168.7 18.8 166 154-355 280-445 (537)
108 KOG0973 Histone transcription 99.8 4.9E-19 1.1E-23 174.6 15.8 179 160-353 7-203 (942)
109 KOG0294 WD40 repeat-containing 99.8 6.2E-18 1.4E-22 146.4 20.5 128 154-310 30-160 (362)
110 KOG0270 WD40 repeat-containing 99.8 1.5E-18 3.2E-23 156.3 17.3 174 178-357 192-366 (463)
111 KOG1446 Histone H3 (Lys4) meth 99.8 2.7E-17 5.9E-22 142.7 24.1 173 155-355 90-266 (311)
112 KOG0267 Microtubule severing p 99.8 8.7E-20 1.9E-24 172.7 8.2 165 160-354 23-187 (825)
113 KOG1007 WD repeat protein TSSC 99.8 1.2E-18 2.5E-23 149.3 14.2 171 163-353 121-291 (370)
114 KOG0268 Sof1-like rRNA process 99.8 3.5E-19 7.7E-24 156.6 10.8 162 164-353 186-347 (433)
115 KOG4378 Nuclear protein COP1 [ 99.8 5.4E-18 1.2E-22 154.5 17.1 173 157-357 113-286 (673)
116 KOG0301 Phospholipase A2-activ 99.8 5.6E-18 1.2E-22 159.9 16.3 156 159-352 95-250 (745)
117 KOG0641 WD40 repeat protein [G 99.8 5.1E-17 1.1E-21 134.9 19.4 186 154-354 21-264 (350)
118 KOG0299 U3 snoRNP-associated p 99.8 5.8E-18 1.3E-22 153.1 14.8 162 162-355 199-360 (479)
119 KOG0289 mRNA splicing factor [ 99.8 4.7E-17 1E-21 146.3 20.3 162 159-350 297-461 (506)
120 KOG0299 U3 snoRNP-associated p 99.8 2.2E-17 4.8E-22 149.4 17.5 164 160-355 239-414 (479)
121 KOG1274 WD40 repeat protein [G 99.8 6.2E-17 1.4E-21 157.2 21.5 163 164-352 95-263 (933)
122 KOG1036 Mitotic spindle checkp 99.8 1.7E-16 3.6E-21 137.3 21.6 221 46-355 34-266 (323)
123 KOG1446 Histone H3 (Lys4) meth 99.8 1.4E-16 3E-21 138.4 19.0 160 164-355 13-174 (311)
124 KOG0288 WD40 repeat protein Ti 99.7 7.2E-18 1.6E-22 150.6 11.4 215 56-354 167-420 (459)
125 KOG0639 Transducin-like enhanc 99.7 1.5E-17 3.3E-22 151.9 12.7 172 159-356 413-586 (705)
126 KOG0303 Actin-binding protein 99.7 1.5E-17 3.3E-22 147.8 12.3 128 224-354 76-206 (472)
127 KOG2096 WD40 repeat protein [G 99.7 5.6E-17 1.2E-21 140.8 15.2 188 155-351 76-308 (420)
128 KOG2445 Nuclear pore complex c 99.7 5E-16 1.1E-20 134.3 20.9 178 155-350 102-317 (361)
129 KOG1407 WD40 repeat protein [F 99.7 4.6E-16 9.9E-21 131.8 20.0 158 163-351 145-311 (313)
130 KOG1310 WD40 repeat protein [G 99.7 1.2E-17 2.5E-22 154.1 11.1 175 159-355 44-235 (758)
131 KOG1188 WD40 repeat protein [G 99.7 2.1E-16 4.5E-21 138.4 18.4 174 159-354 64-245 (376)
132 KOG0646 WD40 repeat protein [G 99.7 9.2E-17 2E-21 145.7 15.9 169 160-354 76-250 (476)
133 KOG1188 WD40 repeat protein [G 99.7 6.6E-17 1.4E-21 141.5 14.0 151 179-353 41-198 (376)
134 KOG0307 Vesicle coat complex C 99.7 3.7E-17 8E-22 162.2 13.8 217 61-356 111-332 (1049)
135 KOG1445 Tumor-specific antigen 99.7 4.4E-17 9.6E-22 152.5 13.5 171 164-354 626-801 (1012)
136 KOG1034 Transcriptional repres 99.7 3E-16 6.5E-21 136.8 17.2 174 155-352 125-384 (385)
137 KOG0288 WD40 repeat protein Ti 99.7 1E-16 2.2E-21 143.4 14.4 186 156-348 252-458 (459)
138 KOG0647 mRNA export protein (c 99.7 8.3E-17 1.8E-21 138.8 13.3 123 228-355 26-149 (347)
139 KOG0321 WD40 repeat-containing 99.7 4.5E-17 9.8E-22 152.6 12.5 166 171-355 55-252 (720)
140 KOG0301 Phospholipase A2-activ 99.7 1.8E-16 3.8E-21 149.9 15.9 158 158-353 133-290 (745)
141 KOG0642 Cell-cycle nuclear pro 99.7 5.3E-16 1.2E-20 143.7 18.0 179 158-352 337-562 (577)
142 KOG1273 WD40 repeat protein [G 99.7 3.9E-16 8.4E-21 135.4 16.0 159 168-352 26-227 (405)
143 KOG2919 Guanine nucleotide-bin 99.7 5.6E-16 1.2E-20 134.8 16.8 216 47-342 142-361 (406)
144 KOG0321 WD40 repeat-containing 99.7 3.8E-16 8.3E-21 146.4 16.7 174 159-356 94-306 (720)
145 KOG4227 WD40 repeat protein [G 99.7 1.2E-16 2.6E-21 142.1 12.6 184 154-357 45-231 (609)
146 KOG0293 WD40 repeat-containing 99.7 3E-16 6.5E-21 140.4 15.1 167 159-352 218-385 (519)
147 KOG1445 Tumor-specific antigen 99.7 1.9E-16 4.2E-21 148.2 11.9 169 165-357 581-756 (1012)
148 KOG0639 Transducin-like enhanc 99.7 2.4E-16 5.1E-21 144.1 12.0 156 165-352 509-664 (705)
149 KOG2445 Nuclear pore complex c 99.7 1.7E-14 3.6E-19 125.0 22.5 188 154-354 48-259 (361)
150 KOG0278 Serine/threonine kinas 99.7 6.8E-17 1.5E-21 136.0 7.6 167 156-354 50-216 (334)
151 KOG4328 WD40 protein [Function 99.7 3.3E-15 7.1E-20 135.4 18.7 194 159-354 228-453 (498)
152 KOG1036 Mitotic spindle checkp 99.7 2.3E-15 4.9E-20 130.4 17.0 158 164-357 12-169 (323)
153 KOG1587 Cytoplasmic dynein int 99.7 7.3E-15 1.6E-19 141.8 20.7 188 159-351 285-516 (555)
154 KOG1009 Chromatin assembly com 99.7 6.6E-15 1.4E-19 131.7 18.8 97 159-262 59-155 (434)
155 KOG1009 Chromatin assembly com 99.7 7.1E-16 1.5E-20 137.8 12.0 171 164-351 12-195 (434)
156 KOG1408 WD40 repeat protein [F 99.7 2.5E-15 5.5E-20 142.5 16.1 188 159-351 495-713 (1080)
157 KOG1034 Transcriptional repres 99.7 2.9E-15 6.2E-20 130.7 14.9 167 161-352 34-212 (385)
158 KOG1408 WD40 repeat protein [F 99.7 5.6E-15 1.2E-19 140.2 17.7 196 155-355 359-630 (1080)
159 KOG2106 Uncharacterized conser 99.7 2.9E-14 6.4E-19 130.7 21.7 183 157-356 279-482 (626)
160 KOG0642 Cell-cycle nuclear pro 99.6 2.5E-15 5.4E-20 139.4 14.5 181 157-354 286-522 (577)
161 KOG1587 Cytoplasmic dynein int 99.6 9.1E-15 2E-19 141.1 18.9 175 163-354 240-475 (555)
162 KOG1539 WD repeat protein [Gen 99.6 1.7E-14 3.6E-19 139.2 19.6 158 162-351 490-648 (910)
163 KOG1523 Actin-related protein 99.6 2.3E-14 5E-19 124.8 18.6 178 155-354 45-239 (361)
164 KOG2048 WD40 repeat protein [G 99.6 6.6E-14 1.4E-18 132.4 23.1 171 154-354 57-236 (691)
165 KOG1063 RNA polymerase II elon 99.6 4.7E-15 1E-19 140.3 15.4 169 159-351 519-699 (764)
166 KOG1523 Actin-related protein 99.6 5E-15 1.1E-19 128.9 13.7 164 164-350 9-175 (361)
167 KOG4378 Nuclear protein COP1 [ 99.6 1.6E-15 3.5E-20 138.6 11.0 159 165-354 82-242 (673)
168 KOG0322 G-protein beta subunit 99.6 5.1E-15 1.1E-19 125.7 13.0 173 163-350 148-322 (323)
169 KOG2394 WD40 protein DMR-N9 [G 99.6 1.2E-14 2.6E-19 134.1 15.6 181 165-352 219-453 (636)
170 KOG2048 WD40 repeat protein [G 99.6 3.9E-14 8.5E-19 133.9 18.5 168 159-355 18-188 (691)
171 KOG0649 WD40 repeat protein [G 99.6 9.9E-14 2.1E-18 116.7 18.4 174 159-355 56-239 (325)
172 KOG2919 Guanine nucleotide-bin 99.6 1E-13 2.2E-18 120.9 19.0 171 163-357 102-287 (406)
173 KOG1274 WD40 repeat protein [G 99.6 1.2E-13 2.6E-18 134.7 19.0 152 159-333 132-283 (933)
174 KOG2055 WD40 repeat protein [G 99.6 7.8E-14 1.7E-18 126.7 16.4 166 161-352 340-513 (514)
175 KOG2106 Uncharacterized conser 99.6 3.7E-13 8.1E-18 123.5 20.6 159 158-350 361-520 (626)
176 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.2E-12 2.5E-17 119.0 23.9 162 164-354 113-282 (300)
177 KOG0280 Uncharacterized conser 99.6 4.2E-13 9.1E-18 115.8 19.4 175 166-358 70-248 (339)
178 KOG2096 WD40 repeat protein [G 99.6 2.6E-13 5.5E-18 118.3 17.9 165 165-349 228-400 (420)
179 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.3E-12 2.7E-17 118.7 23.3 158 166-354 31-190 (300)
180 COG2319 FOG: WD40 repeat [Gene 99.6 1.9E-12 4E-17 121.3 24.8 170 156-354 146-317 (466)
181 KOG0649 WD40 repeat protein [G 99.6 1.1E-13 2.4E-18 116.4 13.8 170 167-355 12-190 (325)
182 KOG1063 RNA polymerase II elon 99.5 2.7E-13 5.9E-18 128.6 17.3 173 160-351 567-763 (764)
183 PF08662 eIF2A: Eukaryotic tra 99.5 8.4E-13 1.8E-17 112.7 18.7 149 170-351 10-179 (194)
184 KOG0650 WD40 repeat nucleolar 99.5 1.1E-13 2.4E-18 129.3 14.1 157 163-348 564-732 (733)
185 KOG1310 WD40 repeat protein [G 99.5 2.1E-13 4.6E-18 126.3 15.0 191 154-356 82-308 (758)
186 KOG0644 Uncharacterized conser 99.5 1.2E-14 2.7E-19 140.0 6.5 164 159-354 184-429 (1113)
187 KOG2055 WD40 repeat protein [G 99.5 2.5E-12 5.4E-17 117.0 20.0 162 163-352 255-418 (514)
188 KOG1539 WD repeat protein [Gen 99.5 1.6E-12 3.5E-17 125.7 18.4 173 154-352 191-366 (910)
189 KOG0771 Prolactin regulatory e 99.5 4.6E-13 1E-17 120.6 13.7 158 169-352 148-355 (398)
190 KOG1524 WD40 repeat-containing 99.5 3.8E-13 8.2E-18 124.3 11.1 150 158-341 97-246 (737)
191 KOG1272 WD40-repeat-containing 99.5 1.9E-13 4.1E-18 124.3 8.3 161 163-356 168-328 (545)
192 KOG1517 Guanine nucleotide bin 99.4 6.4E-12 1.4E-16 124.4 17.6 166 164-354 1207-1384(1387)
193 COG2319 FOG: WD40 repeat [Gene 99.4 8.7E-11 1.9E-15 109.9 23.8 162 166-355 110-275 (466)
194 KOG1538 Uncharacterized conser 99.4 5.7E-12 1.2E-16 119.3 15.3 188 156-351 44-293 (1081)
195 KOG2111 Uncharacterized conser 99.4 1E-10 2.2E-15 102.3 21.0 161 163-353 92-258 (346)
196 KOG1538 Uncharacterized conser 99.4 8.1E-13 1.7E-17 124.9 8.7 147 167-349 14-160 (1081)
197 KOG3881 Uncharacterized conser 99.4 1.1E-11 2.4E-16 110.8 15.2 167 166-352 149-321 (412)
198 KOG1240 Protein kinase contain 99.4 1.5E-11 3.2E-16 123.5 17.1 183 154-353 1037-1227(1431)
199 KOG2110 Uncharacterized conser 99.4 1.7E-10 3.6E-15 102.7 20.9 159 162-353 84-250 (391)
200 KOG1334 WD40 repeat protein [G 99.4 2E-12 4.3E-17 118.4 8.9 176 157-355 134-316 (559)
201 KOG1273 WD40 repeat protein [G 99.4 1E-11 2.2E-16 108.3 12.8 113 232-352 26-138 (405)
202 KOG2139 WD40 repeat protein [G 99.4 7.9E-11 1.7E-15 104.5 18.3 170 165-352 140-310 (445)
203 KOG1272 WD40-repeat-containing 99.3 3.6E-12 7.7E-17 116.1 9.2 153 164-349 208-360 (545)
204 KOG1524 WD40 repeat-containing 99.3 6.7E-12 1.4E-16 116.2 11.0 141 179-351 76-216 (737)
205 PRK01742 tolB translocation pr 99.3 8.9E-11 1.9E-15 112.9 19.4 152 166-350 248-400 (429)
206 KOG2321 WD40 repeat protein [G 99.3 3.7E-11 8.1E-16 112.2 15.0 191 159-357 45-264 (703)
207 PRK01742 tolB translocation pr 99.3 1.5E-10 3.3E-15 111.3 19.7 160 161-354 199-364 (429)
208 PF08662 eIF2A: Eukaryotic tra 99.3 1.7E-10 3.7E-15 98.5 17.8 112 164-307 58-179 (194)
209 KOG2111 Uncharacterized conser 99.3 1.2E-09 2.5E-14 95.7 22.8 183 44-308 72-257 (346)
210 KOG0974 WD-repeat protein WDR6 99.3 1.1E-10 2.4E-15 115.8 17.6 144 179-353 146-290 (967)
211 KOG0650 WD40 repeat nucleolar 99.3 2.6E-11 5.7E-16 113.6 12.2 162 159-350 515-679 (733)
212 KOG2110 Uncharacterized conser 99.3 1.2E-09 2.7E-14 97.2 22.0 118 163-308 127-249 (391)
213 KOG1517 Guanine nucleotide bin 99.3 7E-11 1.5E-15 117.2 15.1 159 171-353 1171-1335(1387)
214 KOG2394 WD40 protein DMR-N9 [G 99.3 1.2E-11 2.6E-16 114.6 9.2 118 164-308 289-453 (636)
215 KOG0309 Conserved WD40 repeat- 99.3 9.9E-12 2.1E-16 118.9 8.6 217 60-352 61-340 (1081)
216 PRK04922 tolB translocation pr 99.3 6.4E-10 1.4E-14 107.1 21.1 162 161-354 199-371 (433)
217 KOG0771 Prolactin regulatory e 99.3 8.1E-10 1.8E-14 99.9 19.1 115 233-355 148-315 (398)
218 PRK11028 6-phosphogluconolacto 99.3 3.4E-09 7.4E-14 98.4 24.1 171 160-352 29-206 (330)
219 KOG4227 WD40 repeat protein [G 99.2 3E-10 6.5E-15 101.8 15.3 169 159-353 99-276 (609)
220 PRK05137 tolB translocation pr 99.2 2.6E-09 5.6E-14 103.0 22.9 161 161-353 197-368 (435)
221 KOG2321 WD40 repeat protein [G 99.2 3.9E-10 8.4E-15 105.5 16.0 167 164-354 174-346 (703)
222 PRK05137 tolB translocation pr 99.2 3.5E-09 7.5E-14 102.1 23.4 161 162-354 242-415 (435)
223 PRK02889 tolB translocation pr 99.2 7.8E-10 1.7E-14 106.3 18.6 165 162-354 192-363 (427)
224 KOG2139 WD40 repeat protein [G 99.2 4.5E-10 9.7E-15 99.8 15.1 161 165-352 98-269 (445)
225 KOG0280 Uncharacterized conser 99.2 1.3E-10 2.8E-15 100.6 11.3 142 168-332 124-265 (339)
226 KOG0644 Uncharacterized conser 99.2 7.9E-12 1.7E-16 121.0 3.8 120 220-351 181-300 (1113)
227 KOG0322 G-protein beta subunit 99.2 1.8E-10 3.8E-15 98.3 11.3 125 158-306 198-322 (323)
228 KOG1963 WD40 repeat protein [G 99.2 7.1E-10 1.5E-14 108.4 17.0 194 159-357 51-287 (792)
229 PRK03629 tolB translocation pr 99.2 5.1E-09 1.1E-13 100.6 22.6 159 163-354 196-366 (429)
230 PRK03629 tolB translocation pr 99.2 5.5E-09 1.2E-13 100.4 22.2 154 165-351 242-406 (429)
231 PRK02889 tolB translocation pr 99.2 3.7E-09 8.1E-14 101.6 21.0 159 164-350 238-402 (427)
232 KOG1064 RAVE (regulator of V-A 99.2 1.2E-10 2.6E-15 120.8 10.7 156 154-353 2241-2400(2439)
233 PRK11028 6-phosphogluconolacto 99.2 5.1E-09 1.1E-13 97.2 20.9 170 164-351 124-304 (330)
234 KOG3881 Uncharacterized conser 99.2 3.8E-10 8.2E-15 101.1 12.3 139 166-331 203-342 (412)
235 KOG1354 Serine/threonine prote 99.2 6.4E-10 1.4E-14 98.2 13.2 260 56-354 74-362 (433)
236 KOG1240 Protein kinase contain 99.2 4.6E-09 9.9E-14 106.1 20.5 213 84-355 1056-1277(1431)
237 PRK04922 tolB translocation pr 99.1 7.8E-09 1.7E-13 99.6 21.6 156 164-352 246-412 (433)
238 TIGR02800 propeller_TolB tol-p 99.1 7.1E-09 1.5E-13 99.4 21.1 161 162-354 186-357 (417)
239 KOG1354 Serine/threonine prote 99.1 4.4E-10 9.5E-15 99.3 10.6 190 164-357 83-307 (433)
240 KOG0974 WD-repeat protein WDR6 99.1 1.6E-09 3.5E-14 107.6 14.3 119 160-308 170-289 (967)
241 KOG3914 WD repeat protein WDR4 99.1 3.4E-09 7.4E-14 95.5 14.5 165 166-356 63-228 (390)
242 KOG1963 WD40 repeat protein [G 99.1 6.2E-09 1.4E-13 101.9 17.2 167 162-354 202-378 (792)
243 KOG1064 RAVE (regulator of V-A 99.1 1.1E-09 2.5E-14 113.8 11.6 158 164-354 2207-2369(2439)
244 TIGR02800 propeller_TolB tol-p 99.0 4.8E-08 1E-12 93.7 22.1 156 163-351 231-397 (417)
245 PRK01029 tolB translocation pr 99.0 7E-08 1.5E-12 92.7 22.6 166 164-354 229-406 (428)
246 KOG4714 Nucleoporin [Nuclear s 99.0 8.3E-10 1.8E-14 94.1 8.0 149 179-352 102-255 (319)
247 KOG0309 Conserved WD40 repeat- 99.0 5.6E-10 1.2E-14 107.2 7.8 165 166-353 68-234 (1081)
248 PRK00178 tolB translocation pr 99.0 6.4E-08 1.4E-12 93.3 22.0 164 161-355 194-367 (430)
249 KOG1409 Uncharacterized conser 99.0 2.1E-08 4.5E-13 88.8 16.5 142 160-308 109-271 (404)
250 PRK04792 tolB translocation pr 99.0 1.2E-07 2.6E-12 91.6 22.6 164 162-354 214-385 (448)
251 KOG4190 Uncharacterized conser 99.0 1.8E-09 3.9E-14 100.8 9.0 179 155-354 725-909 (1034)
252 KOG4547 WD40 repeat-containing 99.0 1.4E-08 3E-13 95.7 14.5 118 226-352 99-221 (541)
253 KOG4497 Uncharacterized conser 99.0 1.5E-08 3.2E-13 89.3 13.3 160 154-350 80-239 (447)
254 KOG4532 WD40-like repeat conta 98.9 9.1E-08 2E-12 82.3 17.2 149 181-355 131-286 (344)
255 PRK04792 tolB translocation pr 98.9 2.7E-07 5.9E-12 89.2 21.4 155 166-351 262-425 (448)
256 KOG4547 WD40 repeat-containing 98.8 3.6E-07 7.8E-12 86.3 18.9 121 159-308 96-221 (541)
257 PRK00178 tolB translocation pr 98.8 7.1E-07 1.5E-11 86.0 21.2 156 165-352 242-407 (430)
258 COG5170 CDC55 Serine/threonine 98.8 1.9E-08 4E-13 88.1 8.8 189 165-357 85-315 (460)
259 KOG2695 WD40 repeat protein [G 98.8 2.2E-08 4.8E-13 88.7 7.9 123 228-354 251-379 (425)
260 KOG1409 Uncharacterized conser 98.7 2.3E-07 5E-12 82.3 13.3 169 164-354 67-273 (404)
261 KOG1334 WD40 repeat protein [G 98.7 2.1E-08 4.6E-13 92.4 6.8 173 167-352 283-467 (559)
262 KOG2066 Vacuolar assembly/sort 98.7 1.9E-07 4.2E-12 91.1 13.1 157 154-354 21-190 (846)
263 KOG2041 WD40 repeat protein [G 98.7 1.2E-07 2.6E-12 91.3 11.3 176 162-351 11-186 (1189)
264 COG5170 CDC55 Serine/threonine 98.7 2.4E-07 5.2E-12 81.3 11.5 166 162-350 169-366 (460)
265 KOG4532 WD40-like repeat conta 98.7 9.5E-07 2.1E-11 76.1 14.5 151 179-357 85-239 (344)
266 PF00400 WD40: WD domain, G-be 98.6 1.1E-07 2.4E-12 58.5 6.1 38 311-349 2-39 (39)
267 PRK01029 tolB translocation pr 98.6 2.5E-06 5.3E-11 82.0 18.4 165 164-355 183-363 (428)
268 KOG3914 WD repeat protein WDR4 98.6 1.1E-06 2.3E-11 79.6 14.3 81 224-310 146-226 (390)
269 KOG1912 WD40 repeat protein [G 98.6 1.3E-06 2.7E-11 85.2 15.2 163 164-355 14-190 (1062)
270 KOG4497 Uncharacterized conser 98.6 2.5E-07 5.5E-12 81.6 9.5 139 171-340 14-152 (447)
271 PF02239 Cytochrom_D1: Cytochr 98.6 1.8E-05 3.8E-10 74.4 22.2 161 169-354 40-205 (369)
272 PF00400 WD40: WD domain, G-be 98.6 1E-07 2.2E-12 58.6 4.7 38 220-258 2-39 (39)
273 KOG2315 Predicted translation 98.6 1.1E-05 2.3E-10 76.2 19.6 162 164-354 164-347 (566)
274 PLN02919 haloacid dehalogenase 98.5 6.9E-06 1.5E-10 87.0 20.1 175 169-355 686-892 (1057)
275 KOG4714 Nucleoporin [Nuclear s 98.5 5.6E-07 1.2E-11 77.1 9.4 75 231-308 181-255 (319)
276 KOG2315 Predicted translation 98.5 8.9E-06 1.9E-10 76.7 17.6 110 229-351 270-390 (566)
277 KOG1275 PAB-dependent poly(A) 98.5 7.9E-06 1.7E-10 81.1 16.5 149 168-349 180-340 (1118)
278 PF02239 Cytochrom_D1: Cytochr 98.4 1.1E-05 2.5E-10 75.7 16.9 147 180-354 8-161 (369)
279 KOG1008 Uncharacterized conser 98.4 5.9E-08 1.3E-12 92.4 1.3 170 165-357 56-232 (783)
280 PF11768 DUF3312: Protein of u 98.4 1.4E-05 3.1E-10 76.2 16.9 116 231-352 207-330 (545)
281 PF15492 Nbas_N: Neuroblastoma 98.4 5.4E-05 1.2E-09 66.2 18.7 170 167-355 45-263 (282)
282 PF10282 Lactonase: Lactonase, 98.4 8E-05 1.7E-09 69.6 21.3 172 162-351 33-222 (345)
283 KOG2695 WD40 repeat protein [G 98.4 1.1E-06 2.3E-11 78.3 7.1 144 165-329 252-401 (425)
284 PF10282 Lactonase: Lactonase, 98.3 4.6E-05 1E-09 71.2 18.3 169 166-351 144-322 (345)
285 PRK04043 tolB translocation pr 98.3 0.00016 3.4E-09 69.3 21.9 157 164-352 231-401 (419)
286 PF11768 DUF3312: Protein of u 98.3 4.8E-05 1E-09 72.7 17.2 97 227-331 257-368 (545)
287 PRK04043 tolB translocation pr 98.2 0.0004 8.7E-09 66.5 21.9 158 166-354 188-360 (419)
288 KOG1832 HIV-1 Vpr-binding prot 98.2 1.1E-06 2.3E-11 86.7 3.9 155 161-354 1139-1294(1516)
289 KOG1645 RING-finger-containing 98.2 4.9E-06 1.1E-10 75.5 7.4 92 220-316 184-275 (463)
290 KOG4190 Uncharacterized conser 98.2 2E-06 4.4E-11 80.8 5.1 130 220-354 726-862 (1034)
291 COG4946 Uncharacterized protei 98.2 0.00019 4.1E-09 66.8 17.0 145 161-337 355-504 (668)
292 PF04762 IKI3: IKI3 family; I 98.1 0.00046 1E-08 72.2 21.5 172 156-352 247-457 (928)
293 COG5354 Uncharacterized protei 98.1 0.00028 6.1E-09 66.2 17.4 155 165-352 173-349 (561)
294 PLN02919 haloacid dehalogenase 98.1 0.00018 4E-09 76.4 18.3 121 232-353 685-835 (1057)
295 KOG1645 RING-finger-containing 98.1 7.9E-06 1.7E-10 74.2 6.9 85 271-357 188-272 (463)
296 KOG2066 Vacuolar assembly/sort 98.1 0.00018 3.9E-09 70.9 16.3 159 159-351 52-233 (846)
297 KOG1008 Uncharacterized conser 98.1 1.1E-06 2.3E-11 84.1 0.9 169 162-353 99-277 (783)
298 COG2706 3-carboxymuconate cycl 98.0 0.002 4.4E-08 58.2 20.6 175 159-353 33-223 (346)
299 COG5354 Uncharacterized protei 98.0 0.0018 3.8E-08 61.0 20.5 114 227-352 272-396 (561)
300 COG4946 Uncharacterized protei 97.9 0.0013 2.8E-08 61.4 18.0 144 178-354 332-480 (668)
301 COG2706 3-carboxymuconate cycl 97.9 0.011 2.4E-07 53.5 22.9 163 168-352 147-322 (346)
302 PF04762 IKI3: IKI3 family; I 97.8 0.00071 1.5E-08 70.8 15.9 160 164-350 208-378 (928)
303 KOG1832 HIV-1 Vpr-binding prot 97.8 3.7E-05 8.1E-10 76.3 5.8 156 161-353 1097-1257(1516)
304 KOG2041 WD40 repeat protein [G 97.7 0.00023 4.9E-09 69.4 9.6 115 230-347 15-141 (1189)
305 KOG4640 Anaphase-promoting com 97.7 0.00025 5.5E-09 68.2 9.3 96 164-286 19-115 (665)
306 KOG1275 PAB-dependent poly(A) 97.6 0.00038 8.3E-09 69.6 10.6 146 178-356 147-301 (1118)
307 KOG0882 Cyclophilin-related pe 97.6 0.0005 1.1E-08 63.7 10.5 169 160-355 48-235 (558)
308 KOG2314 Translation initiation 97.6 0.006 1.3E-07 58.1 17.8 126 219-351 436-573 (698)
309 KOG2114 Vacuolar assembly/sort 97.6 0.0066 1.4E-07 60.7 18.4 168 160-351 59-243 (933)
310 PF03178 CPSF_A: CPSF A subuni 97.6 0.006 1.3E-07 56.4 17.6 196 89-347 42-261 (321)
311 smart00320 WD40 WD40 repeats. 97.6 0.00023 5E-09 41.8 5.3 37 312-349 4-40 (40)
312 KOG2314 Translation initiation 97.6 0.0012 2.7E-08 62.6 12.1 138 169-340 214-365 (698)
313 PF08450 SGL: SMP-30/Gluconola 97.5 0.0095 2.1E-07 52.7 17.4 151 170-352 4-165 (246)
314 KOG3621 WD40 repeat-containing 97.5 0.00068 1.5E-08 66.1 10.5 116 231-352 35-155 (726)
315 KOG4640 Anaphase-promoting com 97.5 0.00037 8E-09 67.1 8.5 94 230-330 21-115 (665)
316 KOG1912 WD40 repeat protein [G 97.5 0.0018 3.8E-08 64.0 13.1 123 159-306 49-185 (1062)
317 COG0823 TolB Periplasmic compo 97.5 0.004 8.6E-08 59.6 15.2 207 46-332 172-381 (425)
318 smart00320 WD40 WD40 repeats. 97.5 0.0003 6.4E-09 41.3 4.9 38 220-258 3-40 (40)
319 PF08450 SGL: SMP-30/Gluconola 97.5 0.013 2.8E-07 51.8 17.2 150 164-340 84-245 (246)
320 PF08553 VID27: VID27 cytoplas 97.4 0.0045 9.8E-08 62.9 15.4 124 219-350 514-646 (794)
321 KOG0882 Cyclophilin-related pe 97.4 0.00058 1.3E-08 63.2 8.1 165 162-351 6-174 (558)
322 COG0823 TolB Periplasmic compo 97.4 0.0056 1.2E-07 58.6 14.9 160 166-353 193-360 (425)
323 PF07433 DUF1513: Protein of u 97.4 0.017 3.6E-07 52.2 16.6 162 160-354 51-250 (305)
324 KOG3621 WD40 repeat-containing 97.4 0.002 4.3E-08 63.0 11.5 141 166-329 34-179 (726)
325 KOG1920 IkappaB kinase complex 97.4 0.031 6.8E-07 58.1 20.3 113 233-353 199-324 (1265)
326 PF15492 Nbas_N: Neuroblastoma 97.3 0.022 4.8E-07 50.2 16.0 108 231-340 45-166 (282)
327 KOG3617 WD40 and TPR repeat-co 97.3 0.00068 1.5E-08 67.4 7.3 108 234-351 20-131 (1416)
328 PF06977 SdiA-regulated: SdiA- 97.3 0.053 1.2E-06 47.9 18.2 164 161-349 17-199 (248)
329 KOG1920 IkappaB kinase complex 97.2 0.0088 1.9E-07 62.0 14.9 154 169-350 199-364 (1265)
330 KOG2114 Vacuolar assembly/sort 97.2 0.015 3.2E-07 58.3 15.5 156 173-353 31-203 (933)
331 KOG2395 Protein involved in va 97.1 0.0077 1.7E-07 57.3 11.5 125 219-351 366-500 (644)
332 TIGR02658 TTQ_MADH_Hv methylam 97.1 0.2 4.2E-06 46.7 20.7 111 240-354 205-333 (352)
333 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.017 3.7E-07 43.9 11.1 103 232-347 2-110 (111)
334 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.047 1E-06 41.5 13.1 102 168-302 2-109 (111)
335 PF08553 VID27: VID27 cytoplas 96.9 0.035 7.5E-07 56.7 15.7 103 180-306 544-646 (794)
336 PF08596 Lgl_C: Lethal giant l 96.9 0.027 5.9E-07 53.4 14.3 176 163-355 84-294 (395)
337 KOG2444 WD40 repeat protein [G 96.9 0.0038 8.3E-08 53.2 7.1 104 244-354 72-180 (238)
338 PF15390 DUF4613: Domain of un 96.8 0.033 7.2E-07 53.9 13.8 124 227-351 54-186 (671)
339 KOG3617 WD40 and TPR repeat-co 96.8 0.0026 5.6E-08 63.4 6.4 105 171-307 21-131 (1416)
340 PF04053 Coatomer_WDAD: Coatom 96.4 0.49 1.1E-05 45.6 19.1 142 163-350 30-172 (443)
341 PF12894 Apc4_WD40: Anaphase-p 96.4 0.014 3E-07 37.2 5.5 34 319-354 10-43 (47)
342 PRK02888 nitrous-oxide reducta 96.4 0.12 2.7E-06 51.1 14.5 100 251-352 295-405 (635)
343 TIGR03300 assembly_YfgL outer 96.3 0.24 5.1E-06 46.8 16.4 132 180-348 243-376 (377)
344 PF13360 PQQ_2: PQQ-like domai 96.3 0.66 1.4E-05 40.3 18.8 101 241-355 122-234 (238)
345 PF08596 Lgl_C: Lethal giant l 96.2 0.039 8.4E-07 52.4 9.8 182 167-354 3-246 (395)
346 TIGR02658 TTQ_MADH_Hv methylam 96.1 0.33 7.2E-06 45.2 15.2 104 188-316 27-144 (352)
347 KOG2079 Vacuolar assembly/sort 96.0 0.042 9.1E-07 56.6 9.7 99 244-350 101-202 (1206)
348 PF12894 Apc4_WD40: Anaphase-p 96.0 0.024 5.1E-07 36.1 5.0 33 164-197 10-42 (47)
349 PF14870 PSII_BNR: Photosynthe 95.9 0.29 6.2E-06 44.6 13.9 157 162-348 141-301 (302)
350 PF08728 CRT10: CRT10; InterP 95.9 0.13 2.8E-06 51.9 12.4 138 164-306 99-245 (717)
351 PF07433 DUF1513: Protein of u 95.9 1.2 2.7E-05 40.3 17.6 143 166-332 5-174 (305)
352 KOG2395 Protein involved in va 95.8 0.27 5.9E-06 47.2 13.5 113 168-307 378-500 (644)
353 PF03178 CPSF_A: CPSF A subuni 95.8 0.63 1.4E-05 42.9 16.1 148 179-351 43-202 (321)
354 KOG2079 Vacuolar assembly/sort 95.8 0.038 8.3E-07 56.9 8.2 96 179-300 100-198 (1206)
355 PF02897 Peptidase_S9_N: Proly 95.7 1.5 3.3E-05 41.9 19.0 160 168-354 126-312 (414)
356 COG3391 Uncharacterized conser 95.7 0.96 2.1E-05 42.9 17.0 156 167-354 75-242 (381)
357 TIGR03300 assembly_YfgL outer 95.6 0.69 1.5E-05 43.6 15.7 139 179-354 66-211 (377)
358 KOG2444 WD40 repeat protein [G 95.5 0.04 8.7E-07 47.1 6.2 104 179-308 71-178 (238)
359 KOG4649 PQQ (pyrrolo-quinoline 95.5 1.1 2.4E-05 39.3 15.0 125 175-330 20-145 (354)
360 PF15390 DUF4613: Domain of un 95.3 0.25 5.4E-06 48.1 11.5 128 160-308 51-187 (671)
361 PF10647 Gmad1: Lipoprotein Lp 95.2 1.9 4.2E-05 38.3 16.5 149 167-342 25-186 (253)
362 PF10313 DUF2415: Uncharacteri 95.2 0.072 1.6E-06 32.9 4.9 32 321-352 1-34 (43)
363 KOG3630 Nuclear pore complex, 95.2 0.13 2.9E-06 53.4 9.6 103 164-289 154-256 (1405)
364 KOG2377 Uncharacterized conser 95.1 1.7 3.7E-05 41.3 15.8 155 154-332 5-165 (657)
365 PF13360 PQQ_2: PQQ-like domai 95.1 0.53 1.2E-05 40.9 12.5 144 180-354 38-194 (238)
366 KOG3630 Nuclear pore complex, 95.0 0.19 4.2E-06 52.3 10.3 176 167-350 43-227 (1405)
367 PF00780 CNH: CNH domain; Int 94.8 2.8 6E-05 37.5 18.0 145 179-354 8-168 (275)
368 PF02897 Peptidase_S9_N: Proly 94.7 4.1 8.8E-05 38.9 23.2 226 47-351 107-357 (414)
369 PRK13616 lipoprotein LpqB; Pro 94.7 1.8 3.8E-05 43.6 16.2 147 167-349 351-523 (591)
370 PF06977 SdiA-regulated: SdiA- 94.7 2.9 6.3E-05 37.0 17.9 168 165-348 64-247 (248)
371 PRK13684 Ycf48-like protein; P 94.6 3.3 7.1E-05 38.5 17.0 154 165-349 172-329 (334)
372 COG3204 Uncharacterized protei 94.6 2.9 6.2E-05 37.6 15.4 164 163-351 83-263 (316)
373 PF05694 SBP56: 56kDa selenium 94.6 0.29 6.3E-06 46.3 9.6 132 188-340 222-393 (461)
374 PF05694 SBP56: 56kDa selenium 94.5 3.2 6.9E-05 39.5 16.2 121 231-356 182-347 (461)
375 PF12234 Rav1p_C: RAVE protein 94.5 1 2.2E-05 45.2 13.6 112 231-350 31-155 (631)
376 PF04841 Vps16_N: Vps16, N-ter 94.4 4.9 0.00011 38.5 20.4 60 284-350 186-245 (410)
377 COG3391 Uncharacterized conser 94.2 5.1 0.00011 37.9 18.7 163 167-354 117-286 (381)
378 PF10313 DUF2415: Uncharacteri 93.9 0.2 4.3E-06 31.0 4.7 32 166-197 1-34 (43)
379 PRK11138 outer membrane biogen 93.8 4.9 0.00011 38.2 16.8 96 244-350 296-393 (394)
380 PHA02713 hypothetical protein; 93.7 2 4.4E-05 42.9 14.4 95 253-355 433-537 (557)
381 PF10168 Nup88: Nuclear pore c 93.7 2.7 5.9E-05 43.2 15.3 85 230-315 85-187 (717)
382 PRK02888 nitrous-oxide reducta 93.6 5.8 0.00013 39.7 16.8 78 230-308 321-405 (635)
383 PF12657 TFIIIC_delta: Transcr 93.6 0.51 1.1E-05 39.3 8.5 31 278-308 87-122 (173)
384 KOG1916 Nuclear protein, conta 93.5 0.09 2E-06 53.3 4.3 170 162-354 129-326 (1283)
385 PF00930 DPPIV_N: Dipeptidyl p 93.5 2.9 6.2E-05 39.2 14.3 104 234-341 239-348 (353)
386 PF08728 CRT10: CRT10; InterP 93.4 5.9 0.00013 40.3 16.8 106 244-350 116-245 (717)
387 KOG1897 Damage-specific DNA bi 93.3 12 0.00026 39.1 20.0 218 50-347 753-1000(1096)
388 COG5276 Uncharacterized conser 93.1 6.5 0.00014 35.4 22.4 165 159-355 80-245 (370)
389 PF12234 Rav1p_C: RAVE protein 92.8 2.3 5E-05 42.7 12.8 118 164-307 28-156 (631)
390 PF04053 Coatomer_WDAD: Coatom 92.5 1.5 3.3E-05 42.3 11.1 129 165-331 68-207 (443)
391 COG3386 Gluconolactonase [Carb 92.4 7 0.00015 35.8 14.7 152 172-351 31-193 (307)
392 KOG2247 WD40 repeat-containing 92.2 0.025 5.4E-07 53.5 -1.4 140 171-343 40-180 (615)
393 PF10168 Nup88: Nuclear pore c 92.1 8.3 0.00018 39.7 16.2 94 164-262 83-181 (717)
394 COG3386 Gluconolactonase [Carb 91.9 10 0.00022 34.8 16.7 116 223-342 156-277 (307)
395 PF12657 TFIIIC_delta: Transcr 91.7 2.5 5.4E-05 35.1 10.2 31 231-261 87-122 (173)
396 KOG4649 PQQ (pyrrolo-quinoline 91.5 4.3 9.4E-05 35.8 11.5 103 242-353 23-125 (354)
397 PF05096 Glu_cyclase_2: Glutam 91.5 5.5 0.00012 35.5 12.4 130 180-340 103-250 (264)
398 TIGR02604 Piru_Ver_Nterm putat 91.2 13 0.00029 34.9 16.3 110 224-340 66-202 (367)
399 COG5167 VID27 Protein involved 90.9 4.7 0.0001 39.0 12.0 125 219-351 500-632 (776)
400 COG3490 Uncharacterized protei 90.9 3.3 7.2E-05 37.0 10.3 100 233-339 71-179 (366)
401 KOG2377 Uncharacterized conser 90.6 1.7 3.6E-05 41.3 8.7 102 164-289 65-166 (657)
402 PRK11138 outer membrane biogen 90.3 11 0.00023 35.9 14.4 97 244-354 258-356 (394)
403 PRK10115 protease 2; Provision 90.0 26 0.00056 36.2 22.8 52 46-111 109-160 (686)
404 PRK13616 lipoprotein LpqB; Pro 89.4 6.2 0.00014 39.7 12.4 105 230-347 350-472 (591)
405 KOG1916 Nuclear protein, conta 89.3 0.68 1.5E-05 47.3 5.4 88 154-264 168-269 (1283)
406 KOG1900 Nuclear pore complex, 89.1 6.6 0.00014 42.2 12.5 73 275-352 177-273 (1311)
407 KOG4460 Nuclear pore complex, 88.9 8.1 0.00017 37.6 11.8 78 231-309 105-200 (741)
408 PF10647 Gmad1: Lipoprotein Lp 87.0 21 0.00046 31.6 14.0 110 231-349 25-142 (253)
409 PHA03098 kelch-like protein; P 87.0 30 0.00065 34.3 15.6 103 244-354 392-514 (534)
410 PF07569 Hira: TUP1-like enhan 86.9 4 8.7E-05 35.4 8.2 64 286-352 20-96 (219)
411 KOG2247 WD40 repeat-containing 86.8 0.13 2.9E-06 48.8 -1.1 107 163-299 72-180 (615)
412 KOG4460 Nuclear pore complex, 86.3 8.1 0.00018 37.6 10.3 78 276-354 103-201 (741)
413 PF00780 CNH: CNH domain; Int 85.8 11 0.00025 33.4 11.0 58 244-309 9-66 (275)
414 PF12768 Rax2: Cortical protei 85.8 12 0.00026 33.9 10.8 95 253-354 17-126 (281)
415 KOG1897 Damage-specific DNA bi 85.6 52 0.0011 34.7 16.8 99 244-350 841-941 (1096)
416 COG3490 Uncharacterized protei 85.0 29 0.00063 31.3 14.7 106 165-294 67-178 (366)
417 COG5167 VID27 Protein involved 84.2 31 0.00067 33.7 13.0 62 241-308 572-633 (776)
418 PF06433 Me-amine-dh_H: Methyl 84.2 8.2 0.00018 35.7 9.1 54 300-355 270-324 (342)
419 KOG4441 Proteins containing BT 83.7 51 0.0011 33.1 17.9 100 244-354 383-502 (571)
420 PF14655 RAB3GAP2_N: Rab3 GTPa 83.4 26 0.00056 33.6 12.4 88 223-316 301-406 (415)
421 PRK10115 protease 2; Provision 83.1 60 0.0013 33.5 19.0 116 166-307 127-255 (686)
422 PF14727 PHTB1_N: PTHB1 N-term 83.0 45 0.00099 32.0 16.4 155 175-350 34-203 (418)
423 KOG1896 mRNA cleavage and poly 82.9 38 0.00083 36.5 14.0 161 89-306 1046-1212(1366)
424 PF14583 Pectate_lyase22: Olig 82.7 41 0.00089 31.8 13.1 156 165-349 187-379 (386)
425 PF07995 GSDH: Glucose / Sorbo 82.1 22 0.00047 33.0 11.3 109 231-343 3-135 (331)
426 PF12768 Rax2: Cortical protei 81.9 39 0.00085 30.5 13.0 78 228-307 35-123 (281)
427 TIGR03118 PEPCTERM_chp_1 conse 81.7 41 0.0009 30.7 13.8 122 230-352 23-171 (336)
428 PF07676 PD40: WD40-like Beta 81.5 7.9 0.00017 22.9 5.6 32 317-348 5-38 (39)
429 PF10214 Rrn6: RNA polymerase 81.5 73 0.0016 33.3 19.8 129 166-308 146-277 (765)
430 PF07569 Hira: TUP1-like enhan 81.5 12 0.00026 32.4 8.8 68 239-309 20-97 (219)
431 KOG2280 Vacuolar assembly/sort 81.2 69 0.0015 32.9 14.7 30 166-197 84-113 (829)
432 COG3204 Uncharacterized protei 80.3 45 0.00098 30.2 13.8 125 170-308 133-264 (316)
433 cd00216 PQQ_DH Dehydrogenases 80.2 55 0.0012 32.1 14.0 98 244-355 303-428 (488)
434 KOG4499 Ca2+-binding protein R 78.7 38 0.00082 29.7 10.5 113 166-297 158-275 (310)
435 PF14870 PSII_BNR: Photosynthe 78.6 53 0.0012 30.0 16.7 107 227-341 142-252 (302)
436 PF14655 RAB3GAP2_N: Rab3 GTPa 77.3 26 0.00057 33.5 10.3 40 157-197 299-338 (415)
437 PF11715 Nup160: Nucleoporin N 77.2 15 0.00032 36.7 9.2 71 243-314 159-254 (547)
438 PF00930 DPPIV_N: Dipeptidyl p 76.6 66 0.0014 30.0 17.5 106 170-298 239-349 (353)
439 PF14781 BBS2_N: Ciliary BBSom 76.5 36 0.00078 27.0 10.6 109 236-349 5-123 (136)
440 PHA02713 hypothetical protein; 76.3 61 0.0013 32.5 13.2 101 244-352 354-489 (557)
441 TIGR02604 Piru_Ver_Nterm putat 76.0 58 0.0013 30.6 12.4 105 231-340 15-142 (367)
442 KOG4441 Proteins containing BT 75.7 48 0.0011 33.3 12.2 102 244-353 430-548 (571)
443 TIGR02276 beta_rpt_yvtn 40-res 75.7 13 0.00028 22.1 5.4 32 286-318 1-32 (42)
444 PF02333 Phytase: Phytase; In 73.8 82 0.0018 29.8 18.1 122 230-353 156-292 (381)
445 KOG4499 Ca2+-binding protein R 73.6 63 0.0014 28.4 16.8 107 232-340 160-274 (310)
446 PF10214 Rrn6: RNA polymerase 73.2 1.3E+02 0.0027 31.6 25.9 178 163-352 77-277 (765)
447 PHA03098 kelch-like protein; P 72.5 61 0.0013 32.1 12.2 103 244-354 345-467 (534)
448 PF11715 Nup160: Nucleoporin N 72.2 16 0.00035 36.4 8.0 34 322-355 216-252 (547)
449 PF07676 PD40: WD40-like Beta 72.0 18 0.00038 21.3 5.5 30 228-257 7-38 (39)
450 KOG1896 mRNA cleavage and poly 69.7 1.4E+02 0.0031 32.4 13.9 114 228-350 1096-1212(1366)
451 PLN00033 photosystem II stabil 68.0 1.2E+02 0.0025 29.1 17.8 110 230-348 281-396 (398)
452 COG5276 Uncharacterized conser 66.4 1E+02 0.0023 28.0 15.6 117 230-357 87-205 (370)
453 KOG1900 Nuclear pore complex, 66.1 2.1E+02 0.0046 31.5 14.5 77 227-308 176-273 (1311)
454 PF14761 HPS3_N: Hermansky-Pud 65.7 89 0.0019 27.0 10.2 103 244-352 30-164 (215)
455 TIGR03118 PEPCTERM_chp_1 conse 64.5 1.2E+02 0.0025 27.9 12.3 127 166-308 23-171 (336)
456 PLN02193 nitrile-specifier pro 63.6 1.4E+02 0.0031 29.1 12.5 62 244-309 281-353 (470)
457 TIGR02276 beta_rpt_yvtn 40-res 62.3 30 0.00065 20.4 5.2 23 175-197 1-23 (42)
458 PF14781 BBS2_N: Ciliary BBSom 62.3 77 0.0017 25.1 12.1 117 169-307 2-125 (136)
459 PF04841 Vps16_N: Vps16, N-ter 61.0 1.6E+02 0.0034 28.3 17.0 55 276-332 216-271 (410)
460 COG4590 ABC-type uncharacteriz 60.3 99 0.0021 29.9 9.9 169 163-356 218-391 (733)
461 PF14779 BBS1: Ciliary BBSome 59.2 72 0.0016 28.4 8.5 35 163-197 174-214 (257)
462 KOG3616 Selective LIM binding 58.8 24 0.00053 36.0 5.9 31 277-308 15-45 (1636)
463 PF09826 Beta_propel: Beta pro 57.7 2.1E+02 0.0045 28.5 20.4 165 162-354 322-521 (521)
464 TIGR03606 non_repeat_PQQ dehyd 56.2 2E+02 0.0044 28.0 14.5 63 225-288 25-90 (454)
465 cd00216 PQQ_DH Dehydrogenases 53.1 2.3E+02 0.005 27.8 15.1 20 244-263 112-131 (488)
466 KOG1983 Tomosyn and related SN 52.1 1.1E+02 0.0024 33.1 10.0 35 162-197 32-66 (993)
467 COG5290 IkappaB kinase complex 51.1 73 0.0016 33.0 7.8 99 233-337 250-353 (1243)
468 PF08801 Nucleoporin_N: Nup133 50.6 1.6E+02 0.0035 28.1 10.3 30 322-352 191-220 (422)
469 PF14761 HPS3_N: Hermansky-Pud 50.3 75 0.0016 27.4 6.9 47 291-340 31-78 (215)
470 TIGR02171 Fb_sc_TIGR02171 Fibr 49.0 1.6E+02 0.0034 31.3 10.1 83 251-339 328-417 (912)
471 PF01731 Arylesterase: Arylest 48.8 50 0.0011 23.9 4.9 32 277-308 54-85 (86)
472 PHA02790 Kelch-like protein; P 47.8 2.8E+02 0.0061 27.1 11.7 61 244-309 321-386 (480)
473 PF13449 Phytase-like: Esteras 47.7 2.3E+02 0.0049 26.1 17.4 165 164-338 18-231 (326)
474 TIGR02171 Fb_sc_TIGR02171 Fibr 47.6 1.8E+02 0.0038 30.9 10.2 68 226-297 346-419 (912)
475 KOG1898 Splicing factor 3b, su 46.5 3.9E+02 0.0085 28.9 12.3 36 164-199 58-96 (1205)
476 PHA02790 Kelch-like protein; P 44.8 3.1E+02 0.0068 26.8 16.7 100 244-354 365-473 (480)
477 KOG1898 Splicing factor 3b, su 44.1 4.5E+02 0.0098 28.5 15.7 107 232-347 936-1044(1205)
478 PF10395 Utp8: Utp8 family; I 43.9 3.8E+02 0.0082 27.5 16.9 178 141-350 108-304 (670)
479 COG5290 IkappaB kinase complex 43.7 29 0.00063 35.7 3.9 107 165-297 246-357 (1243)
480 COG4880 Secreted protein conta 43.5 3.1E+02 0.0067 26.5 13.2 166 159-353 421-594 (603)
481 PF11635 Med16: Mediator compl 42.7 4.2E+02 0.0092 27.8 13.2 71 230-302 260-345 (753)
482 PRK13684 Ycf48-like protein; P 42.3 2.8E+02 0.0061 25.6 15.1 107 229-346 172-283 (334)
483 KOG2280 Vacuolar assembly/sort 41.6 3.6E+02 0.0079 27.9 11.0 40 220-261 74-113 (829)
484 PF11635 Med16: Mediator compl 40.5 4.6E+02 0.0099 27.5 16.5 68 277-346 260-345 (753)
485 PF12341 DUF3639: Protein of u 39.1 69 0.0015 17.6 3.8 25 322-349 3-27 (27)
486 TIGR03075 PQQ_enz_alc_DH PQQ-d 38.7 3.6E+02 0.0079 26.8 10.9 61 291-355 122-193 (527)
487 PF14727 PHTB1_N: PTHB1 N-term 38.2 3.8E+02 0.0081 25.9 22.6 60 178-260 145-204 (418)
488 TIGR03548 mutarot_permut cycli 37.6 3.2E+02 0.0069 24.9 12.5 151 177-354 72-282 (323)
489 KOG3522 Predicted guanine nucl 36.8 2E+02 0.0044 30.1 8.5 113 231-353 583-699 (925)
490 smart00564 PQQ beta-propeller 36.7 56 0.0012 18.0 3.0 21 335-355 8-28 (33)
491 PF14779 BBS1: Ciliary BBSome 35.7 3.2E+02 0.0069 24.4 9.1 72 275-348 175-255 (257)
492 COG3823 Glutamine cyclotransfe 35.2 3E+02 0.0065 23.9 10.8 23 318-340 226-248 (262)
493 PLN02153 epithiospecifier prot 34.7 3.7E+02 0.0079 24.7 14.7 19 179-197 87-110 (341)
494 COG1520 FOG: WD40-like repeat 33.4 4E+02 0.0087 24.8 10.7 72 243-320 69-141 (370)
495 PLN00033 photosystem II stabil 32.8 4.5E+02 0.0097 25.1 13.4 107 231-348 240-353 (398)
496 PF13570 PQQ_3: PQQ-like domai 31.7 68 0.0015 18.9 2.9 18 243-260 22-39 (40)
497 PF14583 Pectate_lyase22: Olig 31.7 4.6E+02 0.01 24.9 15.9 79 276-354 187-275 (386)
498 KOG3616 Selective LIM binding 31.5 1.3E+02 0.0028 31.1 6.2 30 231-261 16-45 (1636)
499 PF01731 Arylesterase: Arylest 30.6 93 0.002 22.5 3.9 33 165-197 53-85 (86)
500 PF10636 hemP: Hemin uptake pr 30.4 91 0.002 18.8 3.1 23 160-183 15-37 (38)
No 1
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=100.00 E-value=1.5e-66 Score=454.73 Aligned_cols=304 Identities=54% Similarity=0.949 Sum_probs=266.7
Q ss_pred CCCCCCeeeeCCcc-cCCCCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEE
Q 018322 29 IPSLPTKVWQPGVD-KLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIG 107 (358)
Q Consensus 29 ~~~~~~~~~~p~~~-~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~ 107 (358)
++....++|+||.. +|++||+|++||++|.|+|.++++|||||||++||.+|.+|++||++.|+|+|||+.....|.|.
T Consensus 31 i~~d~~~~~lpg~~~~l~~~EeL~~DpsaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~ 110 (440)
T KOG0302|consen 31 IEEDGAQVYLPGMSRPLGDDEELVADPSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELM 110 (440)
T ss_pred cccccceeeccCCCCCCCCCceEecCHHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceE
Confidence 34444789999954 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCC-CcEEEEEeC
Q 018322 108 VFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQN-PHICASWAD 186 (358)
Q Consensus 108 i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~ 186 (358)
||+++||.+++... +.++.++++|++++ +.|++....++|.+.|||++.++.+ ..++|++++
T Consensus 111 vlkl~nl~~t~~~~------------~gd~~~~~eddedD-----~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse 173 (440)
T KOG0302|consen 111 VLKLSNLHKTRNPN------------DGDGEDEEEDDEDD-----RKPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSE 173 (440)
T ss_pred EEEeeeeecccCCc------------cCCCCCccccchhh-----ccccccccccccccccceeeecccCCcceeeeecc
Confidence 99999999988732 11111111111111 4899999999999999999999985 679999999
Q ss_pred CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcc
Q 018322 187 TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN 266 (358)
Q Consensus 187 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~ 266 (358)
.|.|+||++..+++.+......... ....|++++.+|+.++|+|+|||...|.|+||+|-+.|++|...+ +.|.
T Consensus 174 ~G~V~Vw~l~~~l~~l~~~~~~~~~-----s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g~W~ 247 (440)
T KOG0302|consen 174 NGRVQVWDLAPHLNALSEPGLEVKD-----SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-GSWK 247 (440)
T ss_pred cCcEEEEEchhhhhhhcCccccccc-----cccCceEEecccCccceeeecccccccccccCccccceEeeeecc-Ccee
Confidence 9999999999988877766554433 257899999999999999999999888999999999999999988 8999
Q ss_pred cCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCE
Q 018322 267 VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNADVNVISWNRLASCLLASGSDDGTF 345 (358)
Q Consensus 267 ~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i 345 (358)
+...+|.+|+.+|.+|+|||++.++|||||.||+|+|||+|++. .+....++|.++||.|+||... .+||+|++||++
T Consensus 248 vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~ 326 (440)
T KOG0302|consen 248 VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTL 326 (440)
T ss_pred ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc-ceeeecCCCceE
Confidence 99999999999999999999999999999999999999999963 3455569999999999999999 599999999999
Q ss_pred EEEeCCCCCCC
Q 018322 346 SIHDLRLLKVR 356 (358)
Q Consensus 346 ~iwDlr~~~~~ 356 (358)
+|||||+++..
T Consensus 327 ~iwDLR~~~~~ 337 (440)
T KOG0302|consen 327 SIWDLRQFKSG 337 (440)
T ss_pred EEEEhhhccCC
Confidence 99999998753
No 2
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=8.5e-49 Score=350.94 Aligned_cols=288 Identities=30% Similarity=0.529 Sum_probs=235.6
Q ss_pred CCCCCCeeeeCCcccCCCCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEE
Q 018322 29 IPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGV 108 (358)
Q Consensus 29 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i 108 (358)
..+++.++|+.-++ +|||.+.+++|+|||||+||+||........|.. ++|++||++++..+|+|+|
T Consensus 15 ~i~Eey~~WKkNtp------------~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~-~rliLGthTs~~~~n~L~i 81 (422)
T KOG0264|consen 15 QINEEYKIWKKNTP------------FLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSK-QRLILGTHTSGSEQNYLVI 81 (422)
T ss_pred cccchhhHHhhcCc------------HHHHHhhhccccccceEEEEcCCcccccCCCcee-EEEEEEeecCCCCccEEEE
Confidence 45667899999877 9999999999999999999999955444455554 8999999999999999999
Q ss_pred EEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCC--CCC-CeEEEEEecCCCceeEEEEcCCCCcEEEEEe
Q 018322 109 FKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGG--SGT-PILQLRKVAHQGCVNRIRAMTQNPHICASWA 185 (358)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s 185 (358)
.++ .|+...... + + ...+.+.++.++ ... .+-....+.|.|.||++|++|+++.++||++
T Consensus 82 A~v-~lp~~~~~~----------~--~----~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t 144 (422)
T KOG0264|consen 82 ASV-QLPTDDAQF----------E--D----KHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKT 144 (422)
T ss_pred Eee-cCCCccccc----------c--c----ccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecC
Confidence 998 555443322 1 0 011122222111 113 3344678899999999999999999999999
Q ss_pred CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCC-
Q 018322 186 DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT- 264 (358)
Q Consensus 186 ~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~- 264 (358)
..+.|+|||..++.......+ ...|...+.||+.++++|+|++...|.|++|+.|++|++||++..+.
T Consensus 145 ~~~dv~Vfd~tk~~s~~~~~~-----------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 145 SSGDVYVFDYTKHPSKPKASG-----------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CCCCEEEEEeccCCCcccccc-----------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC
Confidence 999999999998655443221 25777899999999999999999999999999999999999987544
Q ss_pred --cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC-CCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC
Q 018322 265 --WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV-GKSALTSFKAHNADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 265 --~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~-~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~ 341 (358)
.......+.+|...|++++|+|.+..+|++++.|+.+.|||+|+ ..++.....+|.+.|+|++|+|.++.+|||||.
T Consensus 214 ~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~ 293 (422)
T KOG0264|consen 214 DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA 293 (422)
T ss_pred CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC
Confidence 23334568899999999999999999999999999999999996 244667789999999999999999899999999
Q ss_pred CCCEEEEeCCCCCCCC
Q 018322 342 DGTFSIHDLRLLKVRL 357 (358)
Q Consensus 342 Dg~i~iwDlr~~~~~l 357 (358)
|++|++||+|+++.++
T Consensus 294 D~tV~LwDlRnL~~~l 309 (422)
T KOG0264|consen 294 DKTVALWDLRNLNKPL 309 (422)
T ss_pred CCcEEEeechhcccCc
Confidence 9999999999998876
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.9e-31 Score=236.15 Aligned_cols=171 Identities=23% Similarity=0.337 Sum_probs=156.8
Q ss_pred eEEEEEecCCCceeEEEEcCC-CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
.+...+.+|.+.|.++.|+|. ...-+|||+.||+|++|++.. ..++..+.+|...|..
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~---------------------e~~l~~l~gH~~RVs~ 266 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ---------------------ETPLQDLEGHLARVSR 266 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC---------------------Ccchhhhhcchhhhee
Confidence 455788999999999999998 457899999999999999987 5888999999999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
++|+|.|. +|+|++.|.+-+|||+++... .....||...|.+++|+|+|. +++||+.|..-||||+|++ .++.
T Consensus 267 VafHPsG~-~L~TasfD~tWRlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtg-r~im 339 (459)
T KOG0272|consen 267 VAFHPSGK-FLGTASFDSTWRLWDLETKSE----LLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTG-RCIM 339 (459)
T ss_pred eeecCCCc-eeeecccccchhhcccccchh----hHhhcccccccceeEecCCCc-eeeccCccchhheeecccC-cEEE
Confidence 99999999 999999999999999988543 234678999999999999999 9999999999999999996 5888
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+.+|...|..|+|+|+| +.|||||.|++++|||||.-+.
T Consensus 340 ~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 340 FLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred EecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccccc
Confidence 899999999999999999 9999999999999999997653
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.6e-30 Score=247.24 Aligned_cols=169 Identities=23% Similarity=0.402 Sum_probs=155.6
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
...++.+|.|+|..++|+|+. ++|+++|+|++||+|.+.+ ...+..++||..+|+.+.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t---------------------~s~~V~y~GH~~PVwdV~ 500 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDT---------------------WSCLVIYKGHLAPVWDVQ 500 (707)
T ss_pred eeEEeecCCCceeeeeecccc-cceeeccCCcceeeeeccc---------------------ceeEEEecCCCcceeeEE
Confidence 345689999999999999999 8999999999999999998 577788999999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
|+|.|- +||||+.|++.+||..... . +.+.|.+|-+.|.|++|+|+.. ++|+||.|.+||+||+.++ ..+..+
T Consensus 501 F~P~Gy-YFatas~D~tArLWs~d~~-~---PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G-~~VRiF 573 (707)
T KOG0263|consen 501 FAPRGY-YFATASHDQTARLWSTDHN-K---PLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTG-NSVRIF 573 (707)
T ss_pred ecCCce-EEEecCCCceeeeeecccC-C---chhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCC-cEEEEe
Confidence 999998 9999999999999998662 2 2578999999999999999998 9999999999999999996 578889
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+|.++|.+++|+|+| ++|++|+.||.|+|||+.+++.
T Consensus 574 ~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 574 TGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSL 611 (707)
T ss_pred cCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcc
Confidence 9999999999999999 9999999999999999998653
No 5
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.5e-30 Score=214.29 Aligned_cols=179 Identities=26% Similarity=0.501 Sum_probs=162.5
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
..+.+.....-...+..++|++...+++++++.||+++|||+.. ...|+..++.|..+|+
T Consensus 49 ~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------~s~Pi~~~kEH~~EV~ 108 (311)
T KOG0277|consen 49 KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------PSKPIHKFKEHKREVY 108 (311)
T ss_pred CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------CCcchhHHHhhhhheE
Confidence 55666777778899999999999989999999999999999776 4689999999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
+++|++.....+++++-|++|+||+...+.. ..+|.+|...|...+|+|..+++|+++|.|++++|||+|.+.+.+
T Consensus 109 Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S----v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 109 SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS----VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM 184 (311)
T ss_pred EeccccccceeEEeeccCCceEeecCCCCcc----eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee
Confidence 9999998876889999999999999976443 367999999999999999999999999999999999999976665
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
. +.+|...|.++.|+....++|+||+.|+.|++||+|+.+.||
T Consensus 185 ~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl 227 (311)
T KOG0277|consen 185 S-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL 227 (311)
T ss_pred E-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc
Confidence 5 889999999999999888999999999999999999999886
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.4e-29 Score=240.98 Aligned_cols=205 Identities=22% Similarity=0.390 Sum_probs=180.3
Q ss_pred ccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 018322 63 FHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDE 142 (358)
Q Consensus 63 ~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (358)
+...-|..++.+.|+. .+||.++ ++-.+.+|.+.
T Consensus 448 ~GH~GPVyg~sFsPd~-----------rfLlScS-----ED~svRLWsl~------------------------------ 481 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDR-----------RFLLSCS-----EDSSVRLWSLD------------------------------ 481 (707)
T ss_pred ecCCCceeeeeecccc-----------cceeecc-----CCcceeeeecc------------------------------
Confidence 3456788888888884 4666655 55689999882
Q ss_pred CCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc
Q 018322 143 DSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (358)
.........+|..+|+.++|+|.| .+|||+|.|++.++|.... ..|+
T Consensus 482 -----------t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~---------------------~~Pl 528 (707)
T KOG0263|consen 482 -----------TWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDH---------------------NKPL 528 (707)
T ss_pred -----------cceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeeccc---------------------CCch
Confidence 223334455999999999999999 9999999999999999987 6899
Q ss_pred EEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEE
Q 018322 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIA 302 (358)
Q Consensus 223 ~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (358)
..+.||-+.|.|+.|+|+.. ++++||.|.+|++||+.++.. .+.|.||+++|.+|+|||.|. +||+|+.||.|.
T Consensus 529 RifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~----VRiF~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNS----VRIFTGHKGPVTALAFSPCGR-YLASGDEDGLIK 602 (707)
T ss_pred hhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcE----EEEecCCCCceEEEEEcCCCc-eEeecccCCcEE
Confidence 99999999999999999998 999999999999999988544 378999999999999999999 999999999999
Q ss_pred EEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 303 IWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|||+..+ .++..+.+|.+.|++|.|+++| ..||+||.|.+|++||+.+..
T Consensus 603 iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 603 IWDLANG-SLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEEcCCC-cchhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhc
Confidence 9999985 5778889999999999999999 999999999999999998654
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=222.55 Aligned_cols=165 Identities=26% Similarity=0.511 Sum_probs=150.7
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.++|-|++|+|.+ ..||||+.|.++|+||+.. ..|.++.++|..-|.|++|+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~T---------------------eTp~~t~KgH~~WVlcvaws 166 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDT---------------------ETPLFTCKGHKNWVLCVAWS 166 (480)
T ss_pred cccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCC---------------------CCcceeecCCccEEEEEEEC
Confidence 4567899999999999988 7999999999999999998 68999999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC-----CCCEEEEEECCCcEEEEECCCCCCee
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT-----EPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-----~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
|++. .||+|+.||.|++||..+++... ..+.+|+..|++++|.|- .+ .||+++.||+|+|||+..+ .++
T Consensus 167 PDgk-~iASG~~dg~I~lwdpktg~~~g---~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~-~~~ 240 (480)
T KOG0271|consen 167 PDGK-KIASGSKDGSIRLWDPKTGQQIG---RALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLG-TCV 240 (480)
T ss_pred CCcc-hhhccccCCeEEEecCCCCCccc---ccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCc-eEE
Confidence 9999 99999999999999998865544 789999999999999874 35 8999999999999999874 688
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
..+.+|...|+|+.|--++ +|+|||.|++|++|+...+
T Consensus 241 ~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred EEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccch
Confidence 8999999999999998666 9999999999999998764
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.6e-29 Score=225.10 Aligned_cols=168 Identities=22% Similarity=0.328 Sum_probs=153.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|...|.+++|+|+| ++|+|++.|.+-+|||+.+ ...+....||..+|++++|+
T Consensus 255 ~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~t---------------------k~ElL~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 255 QDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLET---------------------KSELLLQEGHSKGVFSIAFQ 312 (459)
T ss_pred hhhhcchhhheeeeecCCC-ceeeecccccchhhccccc---------------------chhhHhhcccccccceeEec
Confidence 4567899999999999999 8999999999999999998 45566678999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
++|. +++||+.|..-+|||++++.. + ..+.+|...|.+|.|+|+|- .+||||.|++++|||+|. ...+.++.+
T Consensus 313 ~DGS-L~~tGGlD~~~RvWDlRtgr~-i---m~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~-r~~ly~ipA 385 (459)
T KOG0272|consen 313 PDGS-LAATGGLDSLGRVWDLRTGRC-I---MFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRM-RSELYTIPA 385 (459)
T ss_pred CCCc-eeeccCccchhheeecccCcE-E---EEecccccceeeEeECCCce-EEeecCCCCcEEEeeecc-cccceeccc
Confidence 9998 999999999999999999544 3 56889999999999999998 999999999999999998 457888999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
|..-|+.|.|.|...++|+|+|.|++++||..++++.
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP 422 (459)
T ss_pred ccchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence 9999999999996559999999999999999988764
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=3.4e-28 Score=215.77 Aligned_cols=204 Identities=20% Similarity=0.352 Sum_probs=173.7
Q ss_pred ccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 018322 63 FHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDE 142 (358)
Q Consensus 63 ~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (358)
..++-|.-.+.|.|++ .+|++|+++. .+.+|...
T Consensus 93 NKvkc~V~~v~WtPeG-----------RRLltgs~SG-----EFtLWNg~------------------------------ 126 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEG-----------RRLLTGSQSG-----EFTLWNGT------------------------------ 126 (464)
T ss_pred cccccceeeEEEcCCC-----------ceeEeecccc-----cEEEecCc------------------------------
Confidence 4566677778888885 4788999664 67777652
Q ss_pred CCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc
Q 018322 143 DSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (358)
.-..+..+++|..+|.++.|++++ ..+++|..+|.|++|+.+. +.+
T Consensus 127 -----------~fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnm----------------------nnV 172 (464)
T KOG0284|consen 127 -----------SFNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNM----------------------NNV 172 (464)
T ss_pred -----------eeeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccch----------------------hhh
Confidence 122335677899999999999999 7999999999999999876 334
Q ss_pred EEEcCCC-CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcE
Q 018322 223 VKFGGHK-DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301 (358)
Q Consensus 223 ~~~~~h~-~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (358)
..+..|. ..|.+++|+|... .|++++.||+|+|||...... ...+.+|.-.|.+++|+|.-. ++|++|.|..|
T Consensus 173 k~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~ke----e~vL~GHgwdVksvdWHP~kg-LiasgskDnlV 246 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKE----ERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLV 246 (464)
T ss_pred HHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCch----hheeccCCCCcceeccCCccc-eeEEccCCcee
Confidence 4455555 7999999999877 999999999999999977433 256789999999999999988 99999999999
Q ss_pred EEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 302 AIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
++||.|++ .++.++..|...|..+.|+|++ ++|+|+|.|..++++|+|+.+
T Consensus 247 KlWDprSg-~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mk 297 (464)
T KOG0284|consen 247 KLWDPRSG-SCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMK 297 (464)
T ss_pred EeecCCCc-chhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhH
Confidence 99999996 6899999999999999999999 999999999999999999654
No 10
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2e-26 Score=207.21 Aligned_cols=180 Identities=22% Similarity=0.376 Sum_probs=160.1
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
+++.+|.++-+.+.|+++....+++++.|++|++||++...... ....+...+.+|...|..++|+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~--------------~~~~p~~~~~~h~~~VeDV~~h 236 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED--------------KVVDPKTIFSGHEDVVEDVAWH 236 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC--------------ccccceEEeecCCcceehhhcc
Confidence 46779999899999999988899999999999999998743220 0256778899999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
+....+|++++.|+.+.|||+|+. .........+|++.|+|++|+|.+.++|||||.|++|+|||+|....+++++..
T Consensus 237 ~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 237 PLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG 314 (422)
T ss_pred ccchhhheeecCCCeEEEEEcCCC--CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC
Confidence 998889999999999999999973 222246678899999999999999999999999999999999998889999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|...|.+|.|+|+...+|||++.|+.+.|||+....
T Consensus 315 H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred CCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 999999999999999999999999999999997654
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=2.9e-26 Score=195.89 Aligned_cols=169 Identities=22% Similarity=0.332 Sum_probs=147.5
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
-....|..++|+|.+ +++|+|+-|....||++....+.. .......+.+|++-+.|..|-+++
T Consensus 95 l~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g---------------~~~v~r~l~gHtgylScC~f~dD~- 157 (343)
T KOG0286|consen 95 LPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEG---------------NVRVSRELAGHTGYLSCCRFLDDN- 157 (343)
T ss_pred cCceeEEEEEECCCC-CeEEecCcCceeEEEecccccccc---------------cceeeeeecCccceeEEEEEcCCC-
Confidence 346789999999999 899999999999999998632211 124446789999999999999854
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
.|+||+.|.++.+||+.++.. ...|.+|++.|.+|+++|...+.|++|+.|++.+|||+|.+ .++++|.+|.++
T Consensus 158 -~ilT~SGD~TCalWDie~g~~----~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesD 231 (343)
T KOG0286|consen 158 -HILTGSGDMTCALWDIETGQQ----TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESD 231 (343)
T ss_pred -ceEecCCCceEEEEEcccceE----EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecccccc
Confidence 799999999999999988443 36799999999999999955559999999999999999996 799999999999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
||+|+|.|+| .-++||++|+++++||||..++
T Consensus 232 INsv~ffP~G-~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 232 INSVRFFPSG-DAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred cceEEEccCC-CeeeecCCCceeEEEeecCCcE
Confidence 9999999999 9999999999999999998654
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.3e-27 Score=205.24 Aligned_cols=172 Identities=27% Similarity=0.406 Sum_probs=151.8
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
.......+.+|+.+|+||+|--++ ++++||.|++|++|+... +.....+.||...|.
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~d---------------------G~~~r~lkGHahwvN 292 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALD---------------------GKLCRELKGHAHWVN 292 (480)
T ss_pred CceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccc---------------------hhHHHhhcccchhee
Confidence 445667888999999999998777 999999999999999887 567778899999898
Q ss_pred EEEeC-----------CCCC------------------------CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCc
Q 018322 234 AIDWN-----------PITT------------------------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS 278 (358)
Q Consensus 234 ~l~~s-----------~~~~------------------------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~ 278 (358)
.|+.+ |.+. .+|++|+.|.++++|+.....+.+ ....+|..-
T Consensus 293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi---~rmtgHq~l 369 (480)
T KOG0271|consen 293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI---TRMTGHQAL 369 (480)
T ss_pred eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch---hhhhchhhh
Confidence 88877 2222 159999999999999987644443 678899999
Q ss_pred EEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|+.+.|||++. ++|++|.|.+|++||.+++ +.+.++++|-+.|..|+|+.+. ++|++||.|.++++||+|+.+
T Consensus 370 Vn~V~fSPd~r-~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 370 VNHVSFSPDGR-YIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred eeeEEECCCcc-EEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeee
Confidence 99999999999 9999999999999999996 5788999999999999999999 999999999999999999865
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=2.8e-27 Score=206.93 Aligned_cols=171 Identities=20% Similarity=0.295 Sum_probs=156.3
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
++...+.+|.|.|.|+.+.|.+ ..||||+.|++|+|||+.+ ++...++.||...|..+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlat---------------------g~LkltltGhi~~vr~v 199 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLAT---------------------GQLKLTLTGHIETVRGV 199 (460)
T ss_pred eehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEccc---------------------CeEEEeecchhheeeee
Confidence 3445567899999999999987 8999999999999999988 67778899999999999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
++|+..+ +|++++.|+.|+.||+.. .+. ++.+.||-+.|.+++.+|.-. +|++|+.|.++||||+|+ +..+..
T Consensus 200 avS~rHp-YlFs~gedk~VKCwDLe~-nkv---IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRt-r~~V~~ 272 (460)
T KOG0285|consen 200 AVSKRHP-YLFSAGEDKQVKCWDLEY-NKV---IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRT-RASVHV 272 (460)
T ss_pred eecccCc-eEEEecCCCeeEEEechh-hhh---HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecc-cceEEE
Confidence 9999998 999999999999999976 333 378999999999999999998 999999999999999999 568899
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
+.+|..+|.++.+.|.. ..++|||.|++|++||++.++..
T Consensus 273 l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 273 LSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM 312 (460)
T ss_pred ecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee
Confidence 99999999999999988 78999999999999999998754
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.8e-26 Score=208.15 Aligned_cols=190 Identities=23% Similarity=0.387 Sum_probs=157.2
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc--ccccccc------------ccCCC------CCC
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNA--LAESETI------------VGQGA------PQV 216 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~--~~~~~~~------------~~~~~------~~~ 216 (358)
+...+-.|.++|.+++|+..| .+|++++.||++.|||....... +...... ..... .+.
T Consensus 268 l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv 346 (524)
T KOG0273|consen 268 LISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKV 346 (524)
T ss_pred hhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEe
Confidence 445667899999999999999 79999999999999999653221 1111111 00000 011
Q ss_pred CCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC-------
Q 018322 217 SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP------- 289 (358)
Q Consensus 217 ~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~------- 289 (358)
....|+.++.||.++|.+|.|+|.+. +|+|++.|++++||....... ...+..|...|..+.|+|+++
T Consensus 347 ~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~~----~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 347 GEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSNS----VHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred cCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCCcc----hhhhhhhccceeeEeecCCCCccCCCcC
Confidence 45689999999999999999999998 999999999999999866433 367889999999999999763
Q ss_pred -CEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 290 -DVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 290 -~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+++++.|++|++||+..+ .+++.+..|..+|.+++|+|++ +++|+|+.||.|+||+.++.+
T Consensus 422 ~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred CceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchh
Confidence 47999999999999999985 6899999999999999999999 999999999999999998764
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-26 Score=196.37 Aligned_cols=174 Identities=23% Similarity=0.348 Sum_probs=151.4
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
......++.+|...|+.+..++++ +++.+++.|+++++||+.. .++...|.||...|.
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~---------------------g~~t~~f~GH~~dVl 109 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLAT---------------------GESTRRFVGHTKDVL 109 (315)
T ss_pred cCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecC---------------------CcEEEEEEecCCceE
Confidence 445567788999999999999999 7999999999999999987 578889999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC-CCEEEEEECCCcEEEEECCCCCCe
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIWDTRVGKSA 312 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iwD~r~~~~~ 312 (358)
+++|++++. +++||+.|.+|.+|++....... ..-.++..-|.++.|+|+. ..+|++++.|++|++||+++ .+.
T Consensus 110 sva~s~dn~-qivSGSrDkTiklwnt~g~ck~t---~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l 184 (315)
T KOG0279|consen 110 SVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYT---IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQL 184 (315)
T ss_pred EEEecCCCc-eeecCCCcceeeeeeecccEEEE---EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cch
Confidence 999999998 99999999999999986532211 1112237889999999994 33999999999999999998 456
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
...+.+|..-++.+.++|+| .++++|+.||.+.+||++..+.
T Consensus 185 ~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN 226 (315)
T ss_pred hhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCce
Confidence 67788999999999999999 9999999999999999998764
No 16
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.5e-27 Score=196.75 Aligned_cols=169 Identities=22% Similarity=0.341 Sum_probs=156.4
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.++.|..+|.++.|++.....++++|-||+|+||+... .+.+.+|.||...|+...|+|
T Consensus 99 ~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r---------------------~~Sv~Tf~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 99 KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR---------------------PNSVQTFNGHNSCIYQAAFSP 157 (311)
T ss_pred HHHhhhhheEEeccccccceeEEeeccCCceEeecCCC---------------------CcceEeecCCccEEEEEecCC
Confidence 45679999999999998878899999999999999987 577889999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
...+++++++.||++++||++..++.. .+..|...+.++.|+....++++||+.|+.||+||+|..+.++..+.+|
T Consensus 158 ~~~nlfas~Sgd~~l~lwdvr~~gk~~----~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh 233 (311)
T KOG0277|consen 158 HIPNLFASASGDGTLRLWDVRSPGKFM----SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH 233 (311)
T ss_pred CCCCeEEEccCCceEEEEEecCCCcee----EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC
Confidence 998899999999999999999877644 3778999999999999888899999999999999999988899999999
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.-.|..|+|+|....+|||++.|-+++|||....
T Consensus 234 ~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 234 GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred ceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 9999999999999899999999999999998744
No 17
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=4.2e-26 Score=200.82 Aligned_cols=270 Identities=20% Similarity=0.342 Sum_probs=199.6
Q ss_pred CCCCCeeeeCCcccCCCCceeeeChhHHHhhhcccccCcceeEEEEecc-C--------CCcc--------ccCCc----
Q 018322 30 PSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDT-L--------GLVR--------NEFPH---- 88 (358)
Q Consensus 30 ~~~~~~~~~p~~~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~-~--------~~~~--------~~~~~---- 88 (358)
|-.-+.|+.++.. +|-+++-..+|.+.-+.++.||.-++.+|.-. + +... ..+|.
T Consensus 71 PcLsfDVi~D~LG----~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~eddedD~~P~~~~~ 146 (440)
T KOG0302|consen 71 PCLSFDVIPDRLG----DERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDDEDDRKPQIEMK 146 (440)
T ss_pred cccceeeecCCCC----cccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccchhhcccccccc
Confidence 3344566666554 77899999999999999999999999987621 0 0000 01232
Q ss_pred ----------------eEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCC
Q 018322 89 ----------------TAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGS 152 (358)
Q Consensus 89 ----------------~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (358)
..-.++++.+ +.+.++||.+..+.+--.++ ... .. +. +
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~asws---e~G~V~Vw~l~~~l~~l~~~---------------~~~---~~-~s----~ 200 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWS---ENGRVQVWDLAPHLNALSEP---------------GLE---VK-DS----E 200 (440)
T ss_pred ccccccccceeeecccCCcceeeeec---ccCcEEEEEchhhhhhhcCc---------------ccc---cc-cc----c
Confidence 0123444544 45688888885332211110 000 00 00 0
Q ss_pred CCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCe
Q 018322 153 GTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (358)
Q Consensus 153 ~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (358)
..|+ +++.+|.+.=+.+.|+|.....++||.--+.|++|......-.. ... .|.+|+..|
T Consensus 201 ~~Pl--~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v---------------d~~---Pf~gH~~SV 260 (440)
T KOG0302|consen 201 FRPL--FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV---------------DQR---PFTGHTKSV 260 (440)
T ss_pred cCce--EEecccCccceeeecccccccccccCccccceEeeeeccCceee---------------cCc---cccccccch
Confidence 1343 46678999999999999665678888888999999987722111 112 356799999
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC--CC
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV--GK 310 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~--~~ 310 (358)
..|+|||...+.|+||++||+|+|||+|.+.+.. ......|.+.|+-|+|+...+ +||+|+.||+++|||+|. ..
T Consensus 261 EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~ 337 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG 337 (440)
T ss_pred hhhccCCccCceEEeeecCceEEEEEecCCCccc--eeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC
Confidence 9999999999999999999999999999864322 123477999999999999998 999999999999999997 33
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+++..++.|..+|++|.|+|.....|+++|.|.+|.||||.-
T Consensus 338 ~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 338 QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 588999999999999999999888999999999999999964
No 18
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.4e-26 Score=210.88 Aligned_cols=199 Identities=19% Similarity=0.261 Sum_probs=151.3
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCC-------------------
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQV------------------- 216 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~------------------- 216 (358)
..++.+..|...|..+++.|.| ..|+|||.|-+|++||+.....+........+...+..
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred cceEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 4567888899999999999999 78999999999999999874333222111111110000
Q ss_pred -------------------CCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCccc--CCCccccC
Q 018322 217 -------------------SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV--DPNPFIGH 275 (358)
Q Consensus 217 -------------------~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~--~~~~~~~h 275 (358)
....-+...+||...++|.+|+|...+.|+|++.||++++|++.+...... ..+...+.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 001112234789999999999999998999999999999999977443221 11223345
Q ss_pred CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-CeeE-EEecCCC--CeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALT-SFKAHNA--DVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~-~~~~h~~--~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.-+++.++|+|++. +||+|..||+|.+|+.+... .+.. .-.+|.. .|+||+|+++| ++|+|-|.|+++++||||
T Consensus 317 Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhccCCCceeeeecc
Confidence 56789999999999 89999999999999987622 2333 3378877 99999999999 999999999999999999
Q ss_pred CCCCCC
Q 018322 352 LLKVRL 357 (358)
Q Consensus 352 ~~~~~l 357 (358)
+++++|
T Consensus 395 q~kkpL 400 (641)
T KOG0772|consen 395 QFKKPL 400 (641)
T ss_pred ccccch
Confidence 999987
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=3.6e-25 Score=189.20 Aligned_cols=228 Identities=19% Similarity=0.351 Sum_probs=178.3
Q ss_pred CCceeeeChhHHHhhhcccccCc-ceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCC
Q 018322 46 EGEELQCDPTAYNSLHAFHIGWP-CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPN 124 (358)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP-~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~ 124 (358)
+|--+.-|.+.=+-.|.+.+.=- .+++-+-|.+ .++++|. -+|...|+.++.-
T Consensus 76 DGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-----------~~VAcGG-----LdN~Csiy~ls~~---------- 129 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-----------NFVACGG-----LDNKCSIYPLSTR---------- 129 (343)
T ss_pred CCeEEEEEcccccceeEEecCceeEEEEEECCCC-----------CeEEecC-----cCceeEEEecccc----------
Confidence 45555555544444444433211 2466666664 4666665 6789999988410
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 018322 125 KPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAE 204 (358)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~ 204 (358)
+.+ ....+...+.+|++-+.|++|-+++ .|+|+|.|.+..+||+.+
T Consensus 130 -------------------d~~------g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~------- 175 (343)
T KOG0286|consen 130 -------------------DAE------GNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIET------- 175 (343)
T ss_pred -------------------ccc------ccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEccc-------
Confidence 000 1334446688999999999999966 788999999999999998
Q ss_pred ccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEE
Q 018322 205 SETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQW 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~ 284 (358)
.+.+..|.||.+.|.+|+++|...+.++||++|+..+|||+|.+ .. .+.|.+|.+.|++|+|
T Consensus 176 --------------g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c---~qtF~ghesDINsv~f 237 (343)
T KOG0286|consen 176 --------------GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QC---VQTFEGHESDINSVRF 237 (343)
T ss_pred --------------ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ce---eEeecccccccceEEE
Confidence 67888999999999999999943349999999999999999985 33 3789999999999999
Q ss_pred CCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe--cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 285 SPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 285 sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.|+|. -|++|++|++.|+||+|.. +.+..+. .-..+|++++|+..| ++|+.|..|.++.+||.-+.+
T Consensus 238 fP~G~-afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 238 FPSGD-AFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ccCCC-eeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccc
Confidence 99998 9999999999999999995 3444443 234579999999999 999999999999999986554
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=1.8e-25 Score=201.68 Aligned_cols=167 Identities=26% Similarity=0.519 Sum_probs=146.0
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
.|+. ++++|.++|++++|+|.+ .+|+|+|+|++++||.+.. ......+.+|..+|+
T Consensus 350 ~P~~--t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~---------------------~~~~~~l~~Hskei~ 405 (524)
T KOG0273|consen 350 RPVK--TFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQ---------------------SNSVHDLQAHSKEIY 405 (524)
T ss_pred Ccce--eeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCC---------------------Ccchhhhhhhcccee
Confidence 5554 566899999999999999 8999999999999999876 566778899999999
Q ss_pred EEEeCCCCCC--------eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 234 AIDWNPITTG--------RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 234 ~l~~s~~~~~--------~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
.+.|+|.+.+ .|++++.|++|++||+..+ .+ ...|..|+.+|.+|+|+|++. ++|+|+.||.|.||+
T Consensus 406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~---i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 406 TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VP---IHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWS 480 (524)
T ss_pred eEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ce---eEeeccCCCceEEEEecCCCc-EEEecCCCCeeEecc
Confidence 9999998753 7999999999999999773 33 367889999999999999999 999999999999999
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
++++ ..++.+.. ...|..++||..| ..|..+-.||.+++-|+|.
T Consensus 481 ~~~~-~l~~s~~~-~~~Ifel~Wn~~G-~kl~~~~sd~~vcvldlr~ 524 (524)
T KOG0273|consen 481 TKTG-KLVKSYQG-TGGIFELCWNAAG-DKLGACASDGSVCVLDLRK 524 (524)
T ss_pred ccch-heeEeecC-CCeEEEEEEcCCC-CEEEEEecCCCceEEEecC
Confidence 9985 46665554 4559999999999 8888888999999999984
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=1e-26 Score=206.49 Aligned_cols=202 Identities=19% Similarity=0.421 Sum_probs=172.9
Q ss_pred cccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 64 HIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDED 143 (358)
Q Consensus 64 ~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (358)
..+-|.-++.|.+++ .++|.|. ..++|++|+. |+.
T Consensus 136 aHDs~Vr~m~ws~~g-----------~wmiSgD-----~gG~iKyWqp-nmn---------------------------- 170 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNG-----------TWMISGD-----KGGMIKYWQP-NMN---------------------------- 170 (464)
T ss_pred hhcccceeEEEccCC-----------CEEEEcC-----CCceEEeccc-chh----------------------------
Confidence 457899999999986 5888777 5568998875 221
Q ss_pred CCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE
Q 018322 144 SDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (358)
........|...|++++|+|.. ..|+|+|+||+|+|||+.. .++..
T Consensus 171 ------------nVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~---------------------~kee~ 216 (464)
T KOG0284|consen 171 ------------NVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRM---------------------PKEER 216 (464)
T ss_pred ------------hhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccC---------------------Cchhh
Confidence 1111222355999999999977 7999999999999999987 46667
Q ss_pred EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
.+.||.-.|.+++|+|... ++|+|+.|..|++||.+++. ++ .++.+|+..|..+.|+|+++ +|+++|.|..+++
T Consensus 217 vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~-cl---~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv 290 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGS-CL---ATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKV 290 (464)
T ss_pred eeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcc-hh---hhhhhccceEEEEEEcCCCC-eeEEccCCceEEE
Confidence 7899999999999999986 99999999999999999844 33 67889999999999999995 9999999999999
Q ss_pred EECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 304 WDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+|+|+. +-+.++++|...|+++.|+|-...+|++|+.||.|..|.+-
T Consensus 291 ~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 291 FDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred EehhHh-HHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 999964 46778899999999999999988999999999999999987
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=5.9e-25 Score=186.81 Aligned_cols=178 Identities=19% Similarity=0.262 Sum_probs=156.4
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
.-.+.-.+.+|++.|..++..+.++.++.+++.|.++.+|++...... .+.+++.+.||...|.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------~G~~~r~~~GHsH~v~ 67 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------YGVPVRRLTGHSHFVS 67 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------cCceeeeeeccceEec
Confidence 345667889999999999999999899999999999999999884221 3688999999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
.+..+++++ ++++++.|+.+++||+.++ .. .+.|.+|+..|.+++|+|+.+ .+++|+.|.+|++|++-. .+.
T Consensus 68 dv~~s~dg~-~alS~swD~~lrlWDl~~g-~~---t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g--~ck 139 (315)
T KOG0279|consen 68 DVVLSSDGN-FALSASWDGTLRLWDLATG-ES---TRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLG--VCK 139 (315)
T ss_pred ceEEccCCc-eEEeccccceEEEEEecCC-cE---EEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecc--cEE
Confidence 999999998 9999999999999999874 33 367999999999999999998 999999999999999986 455
Q ss_pred EEEecC--CCCeEEEEEeCCC-CcEEEEEeCCCCEEEEeCCCCCC
Q 018322 314 TSFKAH--NADVNVISWNRLA-SCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 314 ~~~~~h--~~~V~~i~~~p~~-~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.++..+ ...|+|+.|+|+. +.+|+++|.|++|++||+++.+.
T Consensus 140 ~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 140 YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 555433 7899999999984 48999999999999999998764
No 23
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=1.3e-24 Score=209.52 Aligned_cols=175 Identities=16% Similarity=0.313 Sum_probs=143.4
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
+.+|.+.|+++.|+|.++.+||+|+.||+|+|||+....... ....++..+.+|...|.+|+|+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~--------------~~~~~l~~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ--------------NISDPIVHLQGHTKKVGIVSFHPS 136 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc--------------ccCcceEEecCCCCcEEEEEeCcC
Confidence 468999999999999544799999999999999997621100 013567789999999999999998
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
+.++|++|+.|++|+|||+.++. . ...+.+|...|.+++|+|++. +|++|+.|+.|+|||+|++ ..+..+.+|.
T Consensus 137 ~~~iLaSgs~DgtVrIWDl~tg~-~---~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~ 210 (493)
T PTZ00421 137 AMNVLASAGADMVVNVWDVERGK-A---VEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDG-TIVSSVEAHA 210 (493)
T ss_pred CCCEEEEEeCCCEEEEEECCCCe-E---EEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCC-cEEEEEecCC
Confidence 75599999999999999998743 2 245778999999999999998 9999999999999999985 4677788887
Q ss_pred CC-eEEEEEeCCCCcEEEEEe----CCCCEEEEeCCCCCCC
Q 018322 321 AD-VNVISWNRLASCLLASGS----DDGTFSIHDLRLLKVR 356 (358)
Q Consensus 321 ~~-V~~i~~~p~~~~~lasgs----~Dg~i~iwDlr~~~~~ 356 (358)
.. +..+.|.+++ .+|++++ .|+.|++||+|+...+
T Consensus 211 ~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p 250 (493)
T PTZ00421 211 SAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASP 250 (493)
T ss_pred CCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCc
Confidence 64 4578899987 4555443 4799999999987655
No 24
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=3.4e-25 Score=190.75 Aligned_cols=238 Identities=18% Similarity=0.312 Sum_probs=187.0
Q ss_pred hhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCC
Q 018322 54 PTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDV 133 (358)
Q Consensus 54 ~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (358)
|+-|+........-||-...+-||+ +.++.|+ .+-.|.|++++.|.... .++
T Consensus 100 ~~~yEt~ylt~HK~~cR~aafs~DG-----------~lvATGs-----aD~SIKildvermlaks-~~~----------- 151 (430)
T KOG0640|consen 100 PSEYETKYLTSHKSPCRAAAFSPDG-----------SLVATGS-----ADASIKILDVERMLAKS-KPK----------- 151 (430)
T ss_pred CcccceEEEeecccceeeeeeCCCC-----------cEEEccC-----CcceEEEeehhhhhhhc-chh-----------
Confidence 7788888888889999999999986 5666666 45699999997654332 110
Q ss_pred CCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCC
Q 018322 134 DSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGA 213 (358)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 213 (358)
++.. .+.. ...|.+ .++..|..+|+++.|+|.. .+|++|+.|++|++||+.+...
T Consensus 152 -em~~-------~~~q--a~hPvI-RTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~sa------------- 206 (430)
T KOG0640|consen 152 -EMIS-------GDTQ--ARHPVI-RTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSA------------- 206 (430)
T ss_pred -hhcc-------CCcc--cCCceE-eehhhccCcccceeecchh-heEEeccCCCeEEEEecccHHH-------------
Confidence 1110 0000 013544 7888999999999999988 8999999999999999987321
Q ss_pred CCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEE
Q 018322 214 PQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFA 293 (358)
Q Consensus 214 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~la 293 (358)
.+....| ....++.+|.|+|.|. +|+.|...-+++|||+++.+. .+...+-.+|++.|++|.+++++. +.+
T Consensus 207 -----KrA~K~~-qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qc-fvsanPd~qht~ai~~V~Ys~t~~-lYv 277 (430)
T KOG0640|consen 207 -----KRAFKVF-QDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQC-FVSANPDDQHTGAITQVRYSSTGS-LYV 277 (430)
T ss_pred -----HHHHHHh-hccceeeeEeecCCCc-eEEEecCCCceeEEeccceeE-eeecCcccccccceeEEEecCCcc-EEE
Confidence 1122222 3345899999999999 999999999999999988443 333456778999999999999999 999
Q ss_pred EEECCCcEEEEECCCCCCeeEEE-ecCC-CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 294 SCSVDGHIAIWDTRVGKSALTSF-KAHN-ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 294 s~s~Dg~I~iwD~r~~~~~~~~~-~~h~-~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+++.||.|+|||--+. .|+.++ .+|. +.|.+..|..++ .+|++.|.|..+++|.+.+++.
T Consensus 278 TaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 278 TASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred EeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCce
Confidence 9999999999998874 588777 6675 478999999999 9999999999999999987753
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2.2e-24 Score=207.85 Aligned_cols=168 Identities=24% Similarity=0.399 Sum_probs=148.3
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
+.+|...|++++|+|++ .++++++.|++|+|||+.. ....+.++.+|...|++++|+|.
T Consensus 199 l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~--------------------~~~~~~~l~gH~~~v~~~~f~p~ 257 (456)
T KOG0266|consen 199 LSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKD--------------------DGRNLKTLKGHSTYVTSVAFSPD 257 (456)
T ss_pred ccccccceeeeEECCCC-cEEEEecCCceEEEeeccC--------------------CCeEEEEecCCCCceEEEEecCC
Confidence 36899999999999999 7999999999999999954 25778899999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-eeEEEecC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-ALTSFKAH 319 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-~~~~~~~h 319 (358)
+. ++++|+.|++|+|||+++ +... ..+.+|...|++++|++++. +|++++.|+.|+|||+.++.. ++..+..+
T Consensus 258 g~-~i~Sgs~D~tvriWd~~~-~~~~---~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 331 (456)
T KOG0266|consen 258 GN-LLVSGSDDGTVRIWDVRT-GECV---RKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGA 331 (456)
T ss_pred CC-EEEEecCCCcEEEEeccC-CeEE---EeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCC
Confidence 96 999999999999999988 4433 78899999999999999999 999999999999999998542 34555555
Q ss_pred CCC--eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 320 NAD--VNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 320 ~~~--V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
... +++++|+|++ .+|++++.|+.+++||++..+.+
T Consensus 332 ~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred CCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcce
Confidence 544 9999999999 99999999999999999987543
No 26
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.8e-25 Score=196.46 Aligned_cols=238 Identities=16% Similarity=0.237 Sum_probs=183.2
Q ss_pred hcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCC
Q 018322 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDS 140 (358)
Q Consensus 61 ~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (358)
|-+-+.-+-|++.|+--+.+.... ..|+++||... .|.||++.-+.......
T Consensus 168 HD~ilpafPLC~ewld~~~~~~~~----gNyvAiGtmdp-----~IeIWDLDI~d~v~P~~------------------- 219 (463)
T KOG0270|consen 168 HDFILPAFPLCIEWLDHGSKSGGA----GNYVAIGTMDP-----EIEIWDLDIVDAVLPCV------------------- 219 (463)
T ss_pred cceeccCcchhhhhhhcCCCCCCC----cceEEEeccCc-----eeEEeccccccccccce-------------------
Confidence 444455555788998653322221 25999999654 89999984211100000
Q ss_pred CCCCCCccCCCC---CCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCC
Q 018322 141 DEDSDDDEEGGS---GTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVS 217 (358)
Q Consensus 141 ~~~~~~~~~~~~---~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~ 217 (358)
--+..... +.........+|+..|-.+.|+..-.++||+||.|.+|.+||+..
T Consensus 220 ----~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~-------------------- 275 (463)
T KOG0270|consen 220 ----TLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT-------------------- 275 (463)
T ss_pred ----eechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC--------------------
Confidence 00000000 011111224479999999999988889999999999999999998
Q ss_pred CCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 218 ~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
.+|..++..|..+|.+++|+|.....|++|+.|++|.|.|.|..+.. .....-.+.|..+.|.|...+.|+++..
T Consensus 276 -g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s----~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 276 -GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS----GKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred -CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc----CceEEeccceEEEEecCCCceeEEEecC
Confidence 78999999999999999999998889999999999999999963321 2222346789999999999989999999
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
||+|+-+|+|...+++.++++|.+.|.+|+++...+.+++|++.|+.|++|++..-+.
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 9999999999988899999999999999999999989999999999999999876554
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=2.6e-24 Score=180.19 Aligned_cols=172 Identities=22% Similarity=0.248 Sum_probs=135.9
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
...+.+|+..|..|.|.-+| +.+.|||+||+++|||++.. .... ...|..+|.++..
T Consensus 76 v~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~---------------------~~qR-~~~~~spVn~vvl 132 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSL---------------------SCQR-NYQHNSPVNTVVL 132 (311)
T ss_pred eeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCc---------------------ccch-hccCCCCcceEEe
Confidence 35677999999999999999 89999999999999999872 1111 2234456666666
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCC---------------------------------------------CcccCCCcc
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDA---------------------------------------------TWNVDPNPF 272 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~---------------------------------------------~~~~~~~~~ 272 (358)
+|... .|++|+.+|.|++||+.+.. ....+...|
T Consensus 133 hpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 133 HPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred cCCcc-eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 66654 66666666666666665420 112234557
Q ss_pred ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 273 ~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+.|.+-+..+.+||++. +||+||.|.+++||.+...-..-..+.+|...+...+|+-++ .+|+||+.|+++++||+++
T Consensus 212 ~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSA 289 (311)
T ss_pred ecccceEEEEEECCCCc-EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCc-cEEEecCCCCceeeccccc
Confidence 78999999999999999 999999999999999987534455678999999999999999 9999999999999999998
Q ss_pred CCC
Q 018322 353 LKV 355 (358)
Q Consensus 353 ~~~ 355 (358)
.+.
T Consensus 290 ~k~ 292 (311)
T KOG0315|consen 290 GKE 292 (311)
T ss_pred Cce
Confidence 873
No 28
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=2e-23 Score=202.54 Aligned_cols=178 Identities=19% Similarity=0.316 Sum_probs=140.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.+.|+++.|+|..+.+||||+.||+|+|||+......... ...++..+.+|...|.+++|+
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~-------------i~~p~~~L~gH~~~V~sVaf~ 134 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE-------------IKDPQCILKGHKKKISIIDWN 134 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-------------cccceEEeecCCCcEEEEEEC
Confidence 4667999999999999985589999999999999999752110000 124566788999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|.+..+|++|+.|++|+|||++++.. . ..+. |...|.+++|+|++. +|++++.|+.|+|||+|++ ..+..+.+
T Consensus 135 P~g~~iLaSgS~DgtIrIWDl~tg~~-~---~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg-~~i~tl~g 207 (568)
T PTZ00420 135 PMNYYIMCSSGFDSFVNIWDIENEKR-A---FQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ-EIASSFHI 207 (568)
T ss_pred CCCCeEEEEEeCCCeEEEEECCCCcE-E---EEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC-cEEEEEec
Confidence 99875678999999999999987432 1 2232 567899999999998 9999999999999999985 56778889
Q ss_pred CCCCeEEEE-----EeCCCCcEEEEEeCCC----CEEEEeCCCCCCCC
Q 018322 319 HNADVNVIS-----WNRLASCLLASGSDDG----TFSIHDLRLLKVRL 357 (358)
Q Consensus 319 h~~~V~~i~-----~~p~~~~~lasgs~Dg----~i~iwDlr~~~~~l 357 (358)
|.+.+.+.. |++++ .+|+|++.|+ +|+|||+|+...++
T Consensus 208 H~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl 254 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSAL 254 (568)
T ss_pred ccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCce
Confidence 987654433 45777 6777777664 79999999876654
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.7e-24 Score=201.36 Aligned_cols=171 Identities=20% Similarity=0.344 Sum_probs=154.8
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
...+.+|..-|.+|..+|..| ++.|+|+|-+|++||... ...+.++|.||..-|.+++|
T Consensus 90 V~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~--------------------~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 90 VKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWEN--------------------EWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred eEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccC--------------------ceeeeeEEcCcceEEEEEEe
Confidence 356779999999999999996 788999999999999998 57888999999999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC-CCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
+|..++.+|||+-|++|++|.+.++.. ..++.+|...|++|.+-+.+ ..+++||++|.+|+|||..+ +.|+.++
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~----nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TL 223 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHP----NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-KSCVQTL 223 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCC----ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-HHHHHHh
Confidence 999988999999999999999966322 47889999999999998765 23899999999999999998 5799999
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+|...|+.+.|+|.- .+|+|||.||+++||.-.+.+.
T Consensus 224 eGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 224 EGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred hcccccceEEEecCCC-cEEEEecCCccEEEecCcceeh
Confidence 9999999999999998 8999999999999999877653
No 30
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=5e-24 Score=187.89 Aligned_cols=187 Identities=22% Similarity=0.379 Sum_probs=150.5
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc-ccccccccc---cCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN-ALAESETIV---GQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
.+|.+.|-+|+..+++ ..+++|+.|.+|.||+...... ..+...... ...........|+.++.||..+|.++.|
T Consensus 190 ~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred cccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 3999999999999999 7999999999999999443211 111111100 0111222457899999999999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC--eeEE
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS--ALTS 315 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~--~~~~ 315 (358)
++. +.+++++.|.+|+.||+.+++.. ..+. -..+++++..+|... ++|+|+.|..||+||.|++.. ..++
T Consensus 269 ~d~--~v~yS~SwDHTIk~WDletg~~~----~~~~-~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s 340 (423)
T KOG0313|consen 269 SDA--TVIYSVSWDHTIKVWDLETGGLK----STLT-TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQS 340 (423)
T ss_pred cCC--CceEeecccceEEEEEeecccce----eeee-cCcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEe
Confidence 993 38999999999999999885542 2222 246799999999887 999999999999999999654 4456
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
+.+|...|.++.|+|...++|++|+.|+++++||+|+.+.||
T Consensus 341 ~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~pl 382 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPL 382 (423)
T ss_pred eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcc
Confidence 789999999999999998999999999999999999998776
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=8.3e-24 Score=200.45 Aligned_cols=218 Identities=19% Similarity=0.328 Sum_probs=175.0
Q ss_pred hHHHhhhccccc-CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCC
Q 018322 55 TAYNSLHAFHIG-WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDV 133 (358)
Q Consensus 55 ~~Y~~~~~~~~~-wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (358)
.-+.++|..++. -|-+++-|---+ -.+++|.. .-++|.||.+.
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tG-----------DWiA~g~~----klgQLlVweWq--------------------- 338 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTG-----------DWIAFGCS----KLGQLLVWEWQ--------------------- 338 (893)
T ss_pred CCceEEEEeecccceeeEEEecccC-----------CEEEEcCC----ccceEEEEEee---------------------
Confidence 344566766666 565555553221 36677763 45699999984
Q ss_pred CCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCC
Q 018322 134 DSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGA 213 (358)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 213 (358)
.....+..++|...++++.++|+| .++|||++||+|+|||...
T Consensus 339 --------------------sEsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S---------------- 381 (893)
T KOG0291|consen 339 --------------------SESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS---------------- 381 (893)
T ss_pred --------------------ccceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC----------------
Confidence 123446677999999999999999 7999999999999999987
Q ss_pred CCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc----------------------------
Q 018322 214 PQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW---------------------------- 265 (358)
Q Consensus 214 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~---------------------------- 265 (358)
+-+..+|..|+..|+++.|+..+. .+++.+-||+|+.||+......
T Consensus 382 -----gfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 382 -----GFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred -----ceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence 678899999999999999999998 9999999999999998653110
Q ss_pred --------c----cCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCC
Q 018322 266 --------N----VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLAS 333 (358)
Q Consensus 266 --------~----~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~ 333 (358)
. ..+-.+.||.++|.+++|+|.+. +|||+|.|.+||+||+-.....+.++ .+...+..++|.|+|
T Consensus 456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG- 532 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDG- 532 (893)
T ss_pred ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCC-
Confidence 0 01123459999999999999998 99999999999999998754455555 467789999999999
Q ss_pred cEEEEEeCCCCEEEEeCCCCC
Q 018322 334 CLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 334 ~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.-||++..||+|.+||.....
T Consensus 533 ~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 533 KELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred CeEEEEEecceEEEEEhhhce
Confidence 999999999999999987543
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5e-23 Score=174.49 Aligned_cols=166 Identities=23% Similarity=0.396 Sum_probs=146.8
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
-+|+..|.+|+|+|.+ ++||++|.|.++.||.-... ....+.++.||..+|-|++|+++|
T Consensus 58 ~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~-------------------efecv~~lEGHEnEVK~Vaws~sG 117 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDG-------------------EFECVATLEGHENEVKCVAWSASG 117 (312)
T ss_pred ccchheeeeeeecCCC-cEEEEeeccceEEEeecCCC-------------------ceeEEeeeeccccceeEEEEcCCC
Confidence 4799999999999999 79999999999999986541 256788999999999999999999
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC--CCeeEEEecC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG--KSALTSFKAH 319 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~--~~~~~~~~~h 319 (358)
. +||+++.|+.|-+|.+...... .....++.|+..|-.+.|+|... +|+|||.|.+|++|.-... -.++.++.+|
T Consensus 118 ~-~LATCSRDKSVWiWe~deddEf-ec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~ 194 (312)
T KOG0645|consen 118 N-YLATCSRDKSVWIWEIDEDDEF-ECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGH 194 (312)
T ss_pred C-EEEEeeCCCeEEEEEecCCCcE-EEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCc
Confidence 8 9999999999999999864432 22456889999999999999998 9999999999999977632 2478889999
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
...|.+++|++.| ..|+++++|++++||-++
T Consensus 195 ~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 195 ENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred cceEEEEEecCCC-ceEEEecCCcceEeeeec
Confidence 9999999999999 899999999999999854
No 33
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=1.5e-23 Score=184.93 Aligned_cols=169 Identities=25% Similarity=0.420 Sum_probs=147.1
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
-...+.+|+++|..|-|++. ..+.+++.|.+|+.||+.. ......+.+. ..+++++
T Consensus 252 P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDlet---------------------g~~~~~~~~~-ksl~~i~ 307 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLET---------------------GGLKSTLTTN-KSLNCIS 307 (423)
T ss_pred ceEEecccccceeeEEEcCC--CceEeecccceEEEEEeec---------------------ccceeeeecC-cceeEee
Confidence 33567899999999999994 4899999999999999987 3444444443 4788999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
.+|... +|++|+.|..|+|||.+++... +....|.+|+.-|.++.|+|.+.+.|++|+.|+++++||+|+...++..+
T Consensus 308 ~~~~~~-Ll~~gssdr~irl~DPR~~~gs-~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 308 YSPLSK-LLASGSSDRHIRLWDPRTGDGS-VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred cccccc-eeeecCCCCceeecCCCCCCCc-eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence 999887 9999999999999999986443 33577999999999999999999999999999999999999987799999
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.+|...|.++.|+..+ +|+|||.|.+|+|+.-+..
T Consensus 386 ~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 386 AGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGSPI 420 (423)
T ss_pred ccCCceEEEEeccCCc--eEEeccCcceEEEeccccc
Confidence 9999999999999754 8999999999999976654
No 34
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=6.6e-23 Score=197.65 Aligned_cols=211 Identities=16% Similarity=0.244 Sum_probs=159.5
Q ss_pred cCcceeEEEEe-ccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVR-DTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (358)
Q Consensus 66 ~wP~ls~~~~~-d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (358)
.=+.+++.|.| +. .+|++|+ .++.|.||++..-. .
T Consensus 75 ~~~V~~v~fsP~d~-----------~~LaSgS-----~DgtIkIWdi~~~~----------------------~------ 110 (493)
T PTZ00421 75 EGPIIDVAFNPFDP-----------QKLFTAS-----EDGTIMGWGIPEEG----------------------L------ 110 (493)
T ss_pred CCCEEEEEEcCCCC-----------CEEEEEe-----CCCEEEEEecCCCc----------------------c------
Confidence 34678888888 42 4677776 56799999883100 0
Q ss_pred CCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE
Q 018322 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (358)
.... ..++ ..+.+|...|.+++|+|.+..+||+++.|++|+|||+.. ...+..
T Consensus 111 -~~~~---~~~l--~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t---------------------g~~~~~ 163 (493)
T PTZ00421 111 -TQNI---SDPI--VHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER---------------------GKAVEV 163 (493)
T ss_pred -cccc---Ccce--EEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC---------------------CeEEEE
Confidence 0000 1222 456789999999999998767999999999999999987 456677
Q ss_pred EcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCc-EEEEEECCCCCCEEEEEE----CCC
Q 018322 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS-VEDLQWSPTEPDVFASCS----VDG 299 (358)
Q Consensus 225 ~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~las~s----~Dg 299 (358)
+.+|...|++++|+|++. +|++|+.|++|++||++++.. . ..+.+|... +..+.|++.+. .+++++ .|+
T Consensus 164 l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~-v---~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr 237 (493)
T PTZ00421 164 IKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTI-V---SSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQR 237 (493)
T ss_pred EcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcE-E---EEEecCCCCcceEEEEcCCCC-eEEEEecCCCCCC
Confidence 889999999999999998 999999999999999987432 2 456677654 45678999887 555544 479
Q ss_pred cEEEEECCCCCCeeEEEecC-CCCeEEEEEeCCCCcEEEEEe-CCCCEEEEeCCCCC
Q 018322 300 HIAIWDTRVGKSALTSFKAH-NADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLK 354 (358)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h-~~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDlr~~~ 354 (358)
.|+|||+|....++.....+ ...+....|++++ .+|++|+ .||.|++||+++.+
T Consensus 238 ~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 238 QIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred eEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCc
Confidence 99999999865555544433 3456667889998 7777776 59999999998764
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=5.6e-24 Score=186.34 Aligned_cols=170 Identities=26% Similarity=0.435 Sum_probs=154.1
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
..++..++.+|...|..+++++-.| ++.+++.|+.|+.||+.. .+.+..+.||-..|+
T Consensus 182 tg~LkltltGhi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~---------------------nkvIR~YhGHlS~V~ 239 (460)
T KOG0285|consen 182 TGQLKLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEY---------------------NKVIRHYHGHLSGVY 239 (460)
T ss_pred cCeEEEeecchhheeeeeeecccCc-eEEEecCCCeeEEEechh---------------------hhhHHHhccccceeE
Confidence 6788899999999999999999995 788899999999999987 577888999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
||+.+|.-. .|++|+.|.++++||+++... ...+.||+.+|.+|.+.|..+ .+++||.|++|++||++.+ +.+
T Consensus 240 ~L~lhPTld-vl~t~grDst~RvWDiRtr~~----V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~ag-kt~ 312 (460)
T KOG0285|consen 240 CLDLHPTLD-VLVTGGRDSTIRVWDIRTRAS----VHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAG-KTM 312 (460)
T ss_pred EEeccccce-eEEecCCcceEEEeeecccce----EEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccC-cee
Confidence 999999998 999999999999999998543 367899999999999999988 8999999999999999996 477
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.++..|...|.+++.+|.. +++|+++.| .|+-|++..+.
T Consensus 313 ~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~ 351 (460)
T KOG0285|consen 313 ITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGE 351 (460)
T ss_pred EeeecccceeeEEecCCch-hhhhccCCc-cceeccCCccc
Confidence 8889999999999999999 899999887 68999987553
No 36
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-24 Score=206.84 Aligned_cols=167 Identities=23% Similarity=0.419 Sum_probs=148.5
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
-.++.|.|.....++|||++..|.|.+||++... ..+.+..|..|+..+++|+|++..+++|
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~------------------rnk~l~~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI------------------RNKLLTVFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCccc------------------cchhhhHhhhhccceeeeeeccCCccEE
Confidence 5677788886557899999999999999998732 2355667899999999999999999999
Q ss_pred EEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEE
Q 018322 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV 325 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~ 325 (358)
+||+.||+|++||++.... ...+.+...+|.+|+|+|...+.|+++.+.|.+++||+|.+..+...+.+|.++|.|
T Consensus 150 iSGSQDg~vK~~DlR~~~S----~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKS----KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccc----cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 9999999999999998543 256777889999999999999999999999999999999988899999999999999
Q ss_pred EEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 326 ISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 326 i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+.|+|++ .+|||||.|+.|+|||+...+.
T Consensus 226 ~nwhPnr-~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 226 LNWHPNR-EWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred EeecCCC-ceeeecCCCccEEEEeccCCCc
Confidence 9999988 9999999999999999986543
No 37
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=3.8e-23 Score=199.33 Aligned_cols=173 Identities=23% Similarity=0.390 Sum_probs=150.4
Q ss_pred CeEEEEEecC-CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 155 PILQLRKVAH-QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 155 ~~~~~~~~~H-~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
..+...+..| ...|.++.|++++ ..+++++.++.+++|+..... ......+.+|...|.
T Consensus 148 ~~~~~~~~~~~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~-------------------~~~~~~l~~h~~~v~ 207 (456)
T KOG0266|consen 148 FSLEQTLAGHECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIK-------------------SNLLRELSGHTRGVS 207 (456)
T ss_pred ceeeeeecccccCceEEEEEcCCC-CeEEEccCCCcEEEeeccccc-------------------chhhcccccccccee
Confidence 3444444454 7899999999999 679999999999999995410 024455689999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
+++|+|++. ++++|+.|++|++||+...+... +.+.+|...|++++|+|.+. ++++|+.|++|+|||+++ ..++
T Consensus 208 ~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~---~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~-~~~~ 281 (456)
T KOG0266|consen 208 DVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNL---KTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRT-GECV 281 (456)
T ss_pred eeEECCCCc-EEEEecCCceEEEeeccCCCeEE---EEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccC-CeEE
Confidence 999999999 99999999999999995544433 77889999999999999995 999999999999999999 4688
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+.+|...|++++|++++ .+|++++.||.|+|||+.++.
T Consensus 282 ~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 282 RKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred EeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCc
Confidence 9999999999999999999 999999999999999999887
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=9.1e-24 Score=199.83 Aligned_cols=161 Identities=19% Similarity=0.356 Sum_probs=149.5
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
.....|...|||+.++|.. .++||||.|.+.+||++.. ...+.++.||+..++++.|+
T Consensus 457 ~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~---------------------~~l~~vLsGH~RGvw~V~Fs 514 (775)
T KOG0319|consen 457 YTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQ---------------------LRLLGVLSGHTRGVWCVSFS 514 (775)
T ss_pred HHHHhhcccccceEecCCC-ceEEecccccceeeecccC---------------------ceEEEEeeCCccceEEEEec
Confidence 3566799999999999998 8999999999999999985 57788999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
+... .++|+|.|++|+||.+.+... .++|.||+..|..++|-.++. .|+||+.||-|+||++.+ ..|..++.+
T Consensus 515 ~~dq-~laT~SgD~TvKIW~is~fSC----lkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt-~eC~~tlD~ 587 (775)
T KOG0319|consen 515 KNDQ-LLATCSGDKTVKIWSISTFSC----LKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKT-NECEMTLDA 587 (775)
T ss_pred cccc-eeEeccCCceEEEEEecccee----eeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccc-hhhhhhhhh
Confidence 9998 999999999999999988443 478999999999999999998 999999999999999998 469999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
|+..|++++-+|.. .+++||+.||.|.+|-
T Consensus 588 H~DrvWaL~~~~~~-~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 588 HNDRVWALSVSPLL-DMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccceeEEEeecCcc-ceeEecCCCeEEEEee
Confidence 99999999999999 7999999999999995
No 39
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.5e-23 Score=190.20 Aligned_cols=168 Identities=26% Similarity=0.339 Sum_probs=146.7
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|+.+|+.+.|+|++..++++|++|+.+++||+.+ ......+.+|++-|.|.+|+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~---------------------a~v~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST---------------------AYVQAELSGHTDYVRCGDIS 162 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC---------------------cEEEEEecCCcceeEeeccc
Confidence 567789999999999999999999999999999999998 23355789999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|.....++||+.||+|++||++....+. .-..|..+|.++.+-|.|. +||+++ ...|++||+-++.+.+.....
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v----~elnhg~pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~~G~qll~~~~~ 236 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRV----VELNHGCPVESVLALPSGS-LIASAG-GNSVKVWDLTTGGQLLTSMFN 236 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCcee----EEecCCCceeeEEEcCCCC-EEEEcC-CCeEEEEEecCCceehhhhhc
Confidence 9987799999999999999999865433 2335899999999999988 888887 468999999987766666666
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|...|+|+.+..++ ..|+|||-||.|++||+.+.+
T Consensus 237 H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~K 271 (487)
T KOG0310|consen 237 HNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYK 271 (487)
T ss_pred ccceEEEEEeecCC-ceEeecccccceEEEEccceE
Confidence 99999999999988 899999999999999987654
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=2.2e-23 Score=178.90 Aligned_cols=167 Identities=19% Similarity=0.319 Sum_probs=144.5
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|+|.|++++|+|++ .+||||+.|..|.+|++... .+-...+++|.+.|..|.|.
T Consensus 41 m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gd--------------------ceN~~~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGD--------------------CENFWVLKGHSGAVMELHGM 99 (338)
T ss_pred hhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEecccc--------------------ccceeeeccccceeEeeeec
Confidence 3567999999999999988 79999999999999997662 34456778999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
+++. .+++++.|.+|+.||+.++.. .+.+.+|+.-|+.+.-+.-+..++.|++.||+++|||+|. +.++.++.
T Consensus 100 ~d~s-~i~S~gtDk~v~~wD~~tG~~----~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t~~- 172 (338)
T KOG0265|consen 100 RDGS-HILSCGTDKTVRGWDAETGKR----IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKTFE- 172 (338)
T ss_pred cCCC-EEEEecCCceEEEEeccccee----eehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhccc-
Confidence 9998 999999999999999998544 3788999999999997777777899999999999999998 44555553
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
....++++.|+..+ .-+.+|+-|+.|++||+|+..
T Consensus 173 ~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d 207 (338)
T KOG0265|consen 173 NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKND 207 (338)
T ss_pred cceeEEEEEecccc-cceeeccccCceeeeccccCc
Confidence 34568999999988 789999999999999998764
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=171.25 Aligned_cols=173 Identities=22% Similarity=0.393 Sum_probs=145.9
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE-cCCCCCeEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-GGHKDEGYA 234 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~ 234 (358)
++...+.+|++.|..++|+|....+||||+.|..|+||+... ... ..+...+ .+|+..|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s-----------------~~ck~vld~~hkrsVRs 66 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDS-----------------WTCKTVLDDGHKRSVRS 66 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CCc-----------------EEEEEeccccchheeee
Confidence 455778899999999999998337999999999999999985 111 1222223 379999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC--Ce
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SA 312 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~~ 312 (358)
++|+|.++ +|++|+.|.++.||.-.. +.+.. ...+.||...|-+++|+++|. +||+|+.|++|-||.+.... .+
T Consensus 67 vAwsp~g~-~La~aSFD~t~~Iw~k~~-~efec-v~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 67 VAWSPHGR-YLASASFDATVVIWKKED-GEFEC-VATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred eeecCCCc-EEEEeeccceEEEeecCC-CceeE-EeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEE
Confidence 99999999 999999999999998653 33222 467889999999999999999 99999999999999988533 37
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+..+..|..+|..+.|+|.. .+|+|+|.|.+|++|.-.
T Consensus 143 ~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDE 180 (312)
T ss_pred EeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeec
Confidence 77789999999999999998 899999999999999754
No 42
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=1.3e-22 Score=178.21 Aligned_cols=167 Identities=18% Similarity=0.269 Sum_probs=147.7
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+..|.+.|.++..+|+. +++|||+.|-..+||++.. +.....+.+|+..|+++.|+
T Consensus 58 ~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~---------------------ge~~~eltgHKDSVt~~~Fs 115 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDIST---------------------GEFAGELTGHKDSVTCCSFS 115 (399)
T ss_pred eehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccC---------------------CcceeEecCCCCceEEEEEc
Confidence 6778999999999999955 8999999999999999988 45677899999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
.++. +||||+.+|.|+||...++... ..+..--..+.=+.|||.+. +|++|+.||.|-+|.+.+. .....+.+
T Consensus 116 hdgt-lLATGdmsG~v~v~~~stg~~~----~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~-~~~kv~~G 188 (399)
T KOG0296|consen 116 HDGT-LLATGDMSGKVLVFKVSTGGEQ----WKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ-ALCKVMSG 188 (399)
T ss_pred cCce-EEEecCCCccEEEEEcccCceE----EEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc-ceeeEecC
Confidence 9998 9999999999999999875432 23333456678889999888 9999999999999999884 46677899
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
|+.++++-.|.|+| ..+++|..||+|++||+.++++
T Consensus 189 h~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred CCCCcccccccCCC-ceEEEEecCceEEEEecCCCce
Confidence 99999999999999 9999999999999999998864
No 43
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.90 E-value=5.6e-23 Score=175.73 Aligned_cols=239 Identities=18% Similarity=0.319 Sum_probs=182.6
Q ss_pred CCCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCC
Q 018322 45 EEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPN 124 (358)
Q Consensus 45 ~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~ 124 (358)
++..|+..++. |.+++|..-+.|+|+..|. ||. +++| ...+|.||++..
T Consensus 82 ~~s~e~~~~a~-------fd~~YP~tK~~wiPd~~g~----~pd----lLAT-----s~D~LRlWri~~----------- 130 (364)
T KOG0290|consen 82 EDSGELVEDAN-------FDHPYPVTKLMWIPDSKGV----YPD----LLAT-----SSDFLRLWRIGD----------- 130 (364)
T ss_pred cCCCceeccCC-------CCCCCCccceEecCCcccc----Ccc----hhhc-----ccCeEEEEeccC-----------
Confidence 44556666554 7899999999999997543 663 3445 234999999830
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEE-EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 018322 125 KPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQ-LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALA 203 (358)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~ 203 (358)
+ +.... -+..+. .+...|.+++++..|+.-.++++.|+|-|.+..|||+....
T Consensus 131 -----------e---------e~~~~--~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~---- 184 (364)
T KOG0290|consen 131 -----------E---------ESRVE--LQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV---- 184 (364)
T ss_pred -----------c---------CCcee--hhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc----
Confidence 0 00000 011222 22334678999999999999999999999999999998731
Q ss_pred cccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEE
Q 018322 204 ESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~ 283 (358)
.......+..|..+|+.++|...+.+.|||.+.||.+++||+|......+.. .-..-..+...++
T Consensus 185 --------------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY-E~p~~~~pLlRLs 249 (364)
T KOG0290|consen 185 --------------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY-EDPSPSTPLLRLS 249 (364)
T ss_pred --------------ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe-cCCCCCCcceeec
Confidence 1223455778999999999999887799999999999999998743321111 1111246788999
Q ss_pred ECCCCCCEEEEEECCC-cEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 284 WSPTEPDVFASCSVDG-HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 284 ~sp~~~~~las~s~Dg-~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
|+++..+++|+-..|+ .|.|.|+|.+..++..+..|.+.||.|+|.|.....|+|+|+|.++.|||+.+.-.
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 9999999999987764 79999999998899999999999999999999989999999999999999986543
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.3e-23 Score=170.71 Aligned_cols=165 Identities=20% Similarity=0.356 Sum_probs=144.5
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+..|+++|+.++|+-+| +++.|++.|.+|++|+... +..+.++.+|..+|..++.+
T Consensus 11 ~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~r---------------------g~liktYsghG~EVlD~~~s 68 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLR---------------------GALIKTYSGHGHEVLDAALS 68 (307)
T ss_pred eeecccccceEEEEEccCC-CEEEEcCCCceEEeecccc---------------------cceeeeecCCCceeeecccc
Confidence 4566799999999999999 7999999999999999876 68889999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-CeeEEEe
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFK 317 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~~~~ 317 (358)
.++. .|++|+.|..|.+||+.++.. .+.+.+|.+.|+.|+|+.... ++++|+.|.++|+||.|+.. .|++.+.
T Consensus 69 ~Dns-kf~s~GgDk~v~vwDV~TGkv----~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 69 SDNS-KFASCGGDKAVQVWDVNTGKV----DRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred cccc-ccccCCCCceEEEEEcccCee----eeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhh
Confidence 9998 999999999999999988433 378999999999999998887 99999999999999999843 3777776
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.....|.+|..+. +.|++|+.||+++.||+|.++
T Consensus 143 ea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~ 176 (307)
T KOG0316|consen 143 EAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGT 176 (307)
T ss_pred hhcCceeEEEecc---cEEEeeccCCcEEEEEeecce
Confidence 6677788888775 568888888888888888765
No 45
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.90 E-value=3.8e-22 Score=167.33 Aligned_cols=170 Identities=24% Similarity=0.362 Sum_probs=142.9
Q ss_pred CCeEEEEEecCC-CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCe
Q 018322 154 TPILQLRKVAHQ-GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (358)
Q Consensus 154 ~~~~~~~~~~H~-~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (358)
..+. .+.+.|. +.||++...|++ ..||+++. ..|||||++.. +..|+.+|.+|...|
T Consensus 29 tG~C-~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~-------------------np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 29 TGIC-SRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSN-------------------NPNPVATFEGHTKNV 86 (311)
T ss_pred cCeE-EEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCC-------------------CCCceeEEeccCCce
Confidence 4455 3445554 799999999999 67777665 57999999883 346899999999999
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC--
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-- 310 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-- 310 (358)
+++.|..+|. .++||+.||+++|||++.... .....|.++|++|..+|+.. -|++|..+|.|++||++...
T Consensus 87 taVgF~~dgr-WMyTgseDgt~kIWdlR~~~~-----qR~~~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 87 TAVGFQCDGR-WMYTGSEDGTVKIWDLRSLSC-----QRNYQHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred EEEEEeecCe-EEEecCCCceEEEEeccCccc-----chhccCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccc
Confidence 9999999998 999999999999999998432 33445779999999999887 89999999999999997520
Q ss_pred ----------------------------------------------CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCC
Q 018322 311 ----------------------------------------------SALTSFKAHNADVNVISWNRLASCLLASGSDDGT 344 (358)
Q Consensus 311 ----------------------------------------------~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~ 344 (358)
.|+..+++|...+..+.++|++ .+||++|.|.+
T Consensus 160 ~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdkt 238 (311)
T KOG0315|consen 160 HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKT 238 (311)
T ss_pred cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC-cEEEeecCCce
Confidence 1344678899999999999999 99999999999
Q ss_pred EEEEeCCCC
Q 018322 345 FSIHDLRLL 353 (358)
Q Consensus 345 i~iwDlr~~ 353 (358)
++||++..+
T Consensus 239 v~iwn~~~~ 247 (311)
T KOG0315|consen 239 VKIWNTDDF 247 (311)
T ss_pred EEEEecCCc
Confidence 999999876
No 46
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=162.51 Aligned_cols=192 Identities=20% Similarity=0.314 Sum_probs=148.1
Q ss_pred CCeEE-EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccccc------------------------
Q 018322 154 TPILQ-LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETI------------------------ 208 (358)
Q Consensus 154 ~~~~~-~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~------------------------ 208 (358)
.|... .+...|.|.|+|.+|+|.| .++|||+.|.+|++.-++.........+..
T Consensus 77 pp~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il 155 (350)
T KOG0641|consen 77 PPSVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAIL 155 (350)
T ss_pred CCeEEeeeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEE
Confidence 34444 4556689999999999999 799999999999998876633221111100
Q ss_pred ccCCCC-------CCCCCCCcEEEcCCCCCeEEE-EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcccc---CCC
Q 018322 209 VGQGAP-------QVSNQSPLVKFGGHKDEGYAI-DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG---HSA 277 (358)
Q Consensus 209 ~~~~~~-------~~~~~~~~~~~~~h~~~v~~l-~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~---h~~ 277 (358)
...+.. ....+++...+.||++-|.+| .|+ +. .+++|+.|.+|++||++-.......-..+.+ ..+
T Consensus 156 ~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~~-m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gless 232 (350)
T KOG0641|consen 156 ASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--GA-MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESS 232 (350)
T ss_pred EecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--Cc-EEEccCCCceEEEEeeeccceeeeccCcccCCCcccc
Confidence 000000 014677888899999988877 464 44 9999999999999999875433322233333 237
Q ss_pred cEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 278 SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 278 ~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.|.+++..|.|+ ++++|..|.+..+||+|.+ .+++++..|...|.|+.|+|.. .++++|+.|..|++-|+..
T Consensus 233 avaav~vdpsgr-ll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 233 AVAAVAVDPSGR-LLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred eeEEEEECCCcc-eeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeeccc
Confidence 899999999999 9999999999999999975 6899999999999999999988 9999999999999999863
No 47
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=5.9e-23 Score=194.38 Aligned_cols=176 Identities=18% Similarity=0.282 Sum_probs=150.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..-.+|.+.|.+|+++..+..+|+++|.|+++++|++........ ........+...|...|.|++.+
T Consensus 405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~------------~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF------------PIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc------------cceehhhHHHHhhcccccceEec
Confidence 455689999999999998889999999999999999987111000 00112222446799999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|... ++||||.|++.+||++.. ... ...+.||+..|.||+|+|... ++||||.|++|+||.+.+ ..|+.++.+
T Consensus 473 ~ndk-LiAT~SqDktaKiW~le~-~~l---~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~-fSClkT~eG 545 (775)
T KOG0319|consen 473 PNDK-LIATGSQDKTAKIWDLEQ-LRL---LGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSIST-FSCLKTFEG 545 (775)
T ss_pred CCCc-eEEecccccceeeecccC-ceE---EEEeeCCccceEEEEeccccc-eeEeccCCceEEEEEecc-ceeeeeecC
Confidence 9998 999999999999999974 222 367899999999999999998 999999999999999998 479999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|...|..++|-.++ ..|+||+.||.|+||++.+..
T Consensus 546 H~~aVlra~F~~~~-~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 546 HTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred ccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchh
Confidence 99999999999999 899999999999999998753
No 48
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.3e-23 Score=198.03 Aligned_cols=172 Identities=21% Similarity=0.359 Sum_probs=148.5
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+..|...|+++.|++..+++|++||.||+|++||++. .+...++.+....|..+.|+
T Consensus 127 ~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~---------------------~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 127 TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS---------------------KKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec---------------------ccccccccccchhhhceeec
Confidence 456679999999999999999999999999999999998 45556677778899999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-eeEEEe
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-ALTSFK 317 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-~~~~~~ 317 (358)
|....+|+++...|.+.+||+|...++. ..+..|.++|.++.|+|+.. +|||||.|+.|+|||...+.. +++++.
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r~~---~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tIn 261 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDRCE---KKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTIN 261 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchhHH---HHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEe
Confidence 9887799999999999999999877765 67889999999999999766 999999999999999986432 444443
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeC--CCCEEEEeCCCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSD--DGTFSIHDLRLLKVR 356 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~--Dg~i~iwDlr~~~~~ 356 (358)
...+|.+++|-|..++.||+++. |-.|+|||+|.+--|
T Consensus 262 -Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 262 -TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred -ecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 45689999999999889999874 779999999976544
No 49
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=7.5e-23 Score=176.89 Aligned_cols=193 Identities=22% Similarity=0.358 Sum_probs=156.5
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc--------------cccccccccCCC-----CCC
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNA--------------LAESETIVGQGA-----PQV 216 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~--------------~~~~~~~~~~~~-----~~~ 216 (358)
....+..+|.|.||+|+|++++ .+++|++.|++.+||...-.... .+..+....... ...
T Consensus 181 ~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 181 ACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred cceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 3446778999999999999999 89999999999999983221100 000000000000 001
Q ss_pred CCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE
Q 018322 217 SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS 296 (358)
Q Consensus 217 ~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s 296 (358)
.-..|+..+.+|...|.+.+|-..+. .+++++.|.+..+||+.++ .. ...+.||....+.++-+|+.+ ++++.+
T Consensus 260 tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEtg-e~---v~~LtGHd~ELtHcstHptQr-LVvTsS 333 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVETG-EV---VNILTGHDSELTHCSTHPTQR-LVVTSS 333 (481)
T ss_pred eeeeeeeeeeccccceEehhhhcCcc-eeeeeeccccceeeeeccC-ce---eccccCcchhccccccCCcce-EEEEec
Confidence 23467889999999999999999998 9999999999999999884 33 378999999999999999998 999999
Q ss_pred CCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 297 VDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 297 ~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
.|.+.|+||+|..-..+..|.+|...|+++.|+.+. .+++|++|.+|+|||||+.+.||
T Consensus 334 rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRspl 392 (481)
T KOG0300|consen 334 RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPL 392 (481)
T ss_pred cCceeEeccchhhcceeeeecccccceeEEEEecCC--ceeecCCCceEEEeeeccccCcc
Confidence 999999999997556777889999999999999866 78999999999999999999886
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.4e-22 Score=178.99 Aligned_cols=234 Identities=21% Similarity=0.307 Sum_probs=164.9
Q ss_pred hHHHhhhcccccCcceeEEEEeccCCCc-cccCCc-eEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCC
Q 018322 55 TAYNSLHAFHIGWPCLSFDIVRDTLGLV-RNEFPH-TAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDED 132 (358)
Q Consensus 55 ~~Y~~~~~~~~~wP~ls~~~~~d~~~~~-~~~~~~-~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~ 132 (358)
++|.-.......-||.+.+++.+....- -..|.+ ..||+.++ .+-...||.+.+.
T Consensus 200 sll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaS-----kD~Taiiw~v~~d------------------ 256 (519)
T KOG0293|consen 200 SLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASAS-----KDSTAIIWIVVYD------------------ 256 (519)
T ss_pred hhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeecc-----CCceEEEEEEecC------------------
Confidence 4455555666778888888777643210 012322 24555555 3446677887410
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCC
Q 018322 133 VDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212 (358)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~ 212 (358)
..-.+..++++|..+|.-|+|+|+. +++++|+.+..+.+||+.+
T Consensus 257 --------------------~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~t--------------- 300 (519)
T KOG0293|consen 257 --------------------VHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDT--------------- 300 (519)
T ss_pred --------------------cceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCc---------------
Confidence 1345668999999999999999999 6777888888899999987
Q ss_pred CCCCCCCCCcEEE-cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCC--Ccc-------------------c---
Q 018322 213 APQVSNQSPLVKF-GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA--TWN-------------------V--- 267 (358)
Q Consensus 213 ~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~--~~~-------------------~--- 267 (358)
+.....+ .+|...+.+.+|.|++. .+++|+.|++|..||+...- .|. .
T Consensus 301 ------gd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 301 ------GDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred ------chhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 2333222 23557899999999998 99999999999999986420 000 0
Q ss_pred -------------------------------------------------------CCCccccCCCc--EEEEEECCCCCC
Q 018322 268 -------------------------------------------------------DPNPFIGHSAS--VEDLQWSPTEPD 290 (358)
Q Consensus 268 -------------------------------------------------------~~~~~~~h~~~--V~~v~~sp~~~~ 290 (358)
..+.+.||+.. +-.-+|--....
T Consensus 374 ~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 00111133221 111123222334
Q ss_pred EEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 291 VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
++|+||.|+.|+||+.+++ .++..+.+|...|||++|||..+.++|+||+||+|+||-.....+
T Consensus 454 fiaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~~r 517 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDNNR 517 (519)
T ss_pred eEEecCCCceEEEEEccCC-ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcccc
Confidence 8999999999999999985 588999999999999999999999999999999999998875543
No 51
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.3e-22 Score=176.57 Aligned_cols=167 Identities=21% Similarity=0.332 Sum_probs=151.4
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
...+|...|.++.|.|.| ..+++++.|.+|++|++.+ +-++.+|.+|..-+..++.+.
T Consensus 188 s~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~t---------------------g~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 188 SLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDT---------------------GYCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred HhcCcccceeeEEEEecC-CeeeecccccceeEEeccc---------------------ceeEEeccCchHhEEEEEecC
Confidence 457899999999999999 8999999999999999998 688899999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC--------------CCEEEEEECCCcEEEEE
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--------------PDVFASCSVDGHIAIWD 305 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--------------~~~las~s~Dg~I~iwD 305 (358)
+|. ++|+|+.|.+|++|-+.+... ...+..|.-+|.+++|.|.. ..++++++.|++|++||
T Consensus 246 DGt-i~As~s~dqtl~vW~~~t~~~----k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 246 DGT-IIASCSNDQTLRVWVVATKQC----KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred Cee-EEEecCCCceEEEEEeccchh----hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence 998 999999999999999977422 25678899999999998742 13899999999999999
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+.++ .++.++.+|...|..++|+|.| .+|+|+.+|+++++||+++.+.
T Consensus 321 v~tg-~cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 321 VSTG-MCLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred ccCC-eEEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEecccee
Confidence 9996 6999999999999999999999 9999999999999999998764
No 52
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=4.5e-22 Score=195.81 Aligned_cols=235 Identities=23% Similarity=0.370 Sum_probs=177.9
Q ss_pred ceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 018322 69 CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDE 148 (358)
Q Consensus 69 ~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (358)
-+|+|+-||+ ..|++|+|-.. ..+.||+...+..... +.++
T Consensus 16 IfSIdv~pdg-----------~~~aTgGq~~d---~~~~iW~~~~vl~~~~-------------------------~~~~ 56 (942)
T KOG0973|consen 16 IFSIDVHPDG-----------VKFATGGQVLD---GGIVIWSQDPVLDEKE-------------------------EKNE 56 (942)
T ss_pred EEEEEecCCc-----------eeEecCCcccc---ccceeeccccccchhh-------------------------hhhc
Confidence 6799999986 58888887642 3556998753321111 1111
Q ss_pred CCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC
Q 018322 149 EGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH 228 (358)
Q Consensus 149 ~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 228 (358)
.-|.+..+...|.+.|+|++|+|+| .+||+||+|+.|.||....... ................+.+..+.+|
T Consensus 57 ----~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~---~~~fgs~g~~~~vE~wk~~~~l~~H 128 (942)
T KOG0973|consen 57 ----NLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGS---GTVFGSTGGAKNVESWKVVSILRGH 128 (942)
T ss_pred ----ccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCC---cccccccccccccceeeEEEEEecC
Confidence 1456668888999999999999999 8999999999999999885100 0001111222333457788899999
Q ss_pred CCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 229 KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 229 ~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
...|..++|+|++. +|++++.|++|.||+.++. .. ...+.+|.+.|-.+.|.|.|+ +||+-+.|++|+||.+..
T Consensus 129 ~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF-~~---~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 129 DSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTF-EL---LKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSD 202 (942)
T ss_pred CCccceeccCCCcc-EEEEecccceEEEEccccc-ee---eeeeecccccccceEECCccC-eeeeecCCceEEEEEccc
Confidence 99999999999998 9999999999999999886 32 477899999999999999999 999999999999998632
Q ss_pred C----------------------------------------C-----------CeeEEEecCCCCeEEEEEeCC------
Q 018322 309 G----------------------------------------K-----------SALTSFKAHNADVNVISWNRL------ 331 (358)
Q Consensus 309 ~----------------------------------------~-----------~~~~~~~~h~~~V~~i~~~p~------ 331 (358)
- . ..-..+-+|.+++.+++|||.
T Consensus 203 w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~ 282 (942)
T KOG0973|consen 203 WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNN 282 (942)
T ss_pred ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccc
Confidence 0 0 011245689999999999981
Q ss_pred --C----C----cEEEEEeCCCCEEEEeCCCCCCC
Q 018322 332 --A----S----CLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 332 --~----~----~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
| . .++|+||.|++|.||.....++.
T Consensus 283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred ccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 1 1 17899999999999998555443
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.90 E-value=8.2e-24 Score=191.69 Aligned_cols=171 Identities=20% Similarity=0.337 Sum_probs=150.8
Q ss_pred CeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
..+.+.+.+|+..|++++|.|...++|++|+.|+.|+||++.. ...++.+|.||..+|.+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--------------------~~~~lrtf~gH~k~Vrd 263 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--------------------DRRCLRTFKGHRKPVRD 263 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec--------------------Ccceehhhhcchhhhhh
Confidence 3456788899999999999995559999999999999999987 46889999999999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
++|+..+. .|+|++.|+.|++||+.++ +.. ..|. -...++++.|+|++.++|++|+.|+.|+.||+|++ ..++
T Consensus 264 ~~~s~~g~-~fLS~sfD~~lKlwDtETG-~~~---~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvq 336 (503)
T KOG0282|consen 264 ASFNNCGT-SFLSASFDRFLKLWDTETG-QVL---SRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQ 336 (503)
T ss_pred hhccccCC-eeeeeecceeeeeeccccc-eEE---EEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHH
Confidence 99999998 9999999999999999884 322 2222 23467899999999889999999999999999996 5788
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.+..|-+.|+.|.|-+++ ..+++.++|++++||+.+..
T Consensus 337 eYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred HHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCC
Confidence 888999999999999999 89999999999999998764
No 54
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.4e-22 Score=173.83 Aligned_cols=169 Identities=21% Similarity=0.381 Sum_probs=150.7
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
......++.+|...|.-++.+.+| .++|+++.|.+|++|-+.. .++...+..|.-+|.
T Consensus 224 tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t---------------------~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 224 TGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVAT---------------------KQCKAELREHEHPVE 281 (406)
T ss_pred cceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEecc---------------------chhhhhhhccccceE
Confidence 344557888999999999999999 8999999999999999987 566677899999999
Q ss_pred EEEeCCCCC--------------CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC
Q 018322 234 AIDWNPITT--------------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 234 ~l~~s~~~~--------------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (358)
+++|.|... .++++|+.|++|++||+.++ .+. .++.+|...|.+++|+|.|+ +|+||.+|+
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL---~tL~ghdnwVr~~af~p~Gk-yi~ScaDDk 356 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCL---FTLVGHDNWVRGVAFSPGGK-YILSCADDK 356 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEE---EEEecccceeeeeEEcCCCe-EEEEEecCC
Confidence 999987421 28999999999999999884 433 67899999999999999999 999999999
Q ss_pred cEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
++++||+++ .+++..+.+|..-|+++.|+.+. .+++||+-|.++++|.-|
T Consensus 357 tlrvwdl~~-~~cmk~~~ah~hfvt~lDfh~~~-p~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 357 TLRVWDLKN-LQCMKTLEAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWECR 406 (406)
T ss_pred cEEEEEecc-ceeeeccCCCcceeEEEecCCCC-ceEEeccccceeeeeecC
Confidence 999999998 47999999999999999999988 799999999999999754
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=4.7e-23 Score=180.02 Aligned_cols=224 Identities=20% Similarity=0.315 Sum_probs=167.8
Q ss_pred eChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEee---cCCCCCCceEEEEEeeccCCccccCCCCCCCC
Q 018322 52 CDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGT---QAEKPSWNSIGVFKVSNISGKRRELVPNKPSN 128 (358)
Q Consensus 52 ~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT---~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~ 128 (358)
.=|.+|.-+++..-.|-|=-+-.-+-+ +|.......|.+--- --++-.+|.|.||+..
T Consensus 165 l~pki~~di~~idsNWr~Gr~~~~rin---c~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n---------------- 225 (499)
T KOG0281|consen 165 LYPKIIQDIETIESNWRCGRHLLQRIN---CRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKN---------------- 225 (499)
T ss_pred hhHHHHHHHhhhhcchhccceeeeeec---CCcccCCceEEEEecchhhhcccccCceEEeccc----------------
Confidence 346788888888888887544332221 122111223322100 0112367888888652
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccccc
Q 018322 129 DDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETI 208 (358)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~ 208 (358)
.-.....+.+|+|.|.|+.|.. .++++|+.|.+|+|||+++
T Consensus 226 -------------------------~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t----------- 266 (499)
T KOG0281|consen 226 -------------------------SLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT----------- 266 (499)
T ss_pred -------------------------cHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC-----------
Confidence 2223356779999999999986 6999999999999999998
Q ss_pred ccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC
Q 018322 209 VGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE 288 (358)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~ 288 (358)
+.++.++.+|...|..+.|+. |++++++.|.+|.+||+..+.. ....+.+.||.++|+.++|+.
T Consensus 267 ----------ge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~-it~rrVLvGHrAaVNvVdfd~-- 330 (499)
T KOG0281|consen 267 ----------GEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFDD-- 330 (499)
T ss_pred ----------CchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH-HHHHHHHhhhhhheeeecccc--
Confidence 789999999999999999986 6999999999999999987542 323356789999999999864
Q ss_pred CCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 289 PDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 289 ~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
. ++++++.|.+|++|++.+. ..+.++.+|...|.|+++. + +++++|+.|.+|++||+..+.
T Consensus 331 k-yIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 331 K-YIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred c-eEEEecCCceEEEEeccce-eeehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccccH
Confidence 4 8999999999999999884 5788888888888888775 3 788888888888888887654
No 56
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=2.2e-21 Score=199.75 Aligned_cols=163 Identities=21% Similarity=0.283 Sum_probs=135.2
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.+...|.++.|++....+||+++.||+|+|||+.. .+.+..+.+|...|++++|+|...
T Consensus 530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~---------------------~~~~~~~~~H~~~V~~l~~~p~~~ 588 (793)
T PLN00181 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR---------------------SQLVTEMKEHEKRVWSIDYSSADP 588 (793)
T ss_pred cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC---------------------CeEEEEecCCCCCEEEEEEcCCCC
Confidence 35678999999987557999999999999999976 466778889999999999997433
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
.+|++|+.||+|++||++++.. . ..+.. ...|.+++|++....+|++|+.||.|++||++....++..+.+|...
T Consensus 589 ~~L~Sgs~Dg~v~iWd~~~~~~-~---~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~ 663 (793)
T PLN00181 589 TLLASGSDDGSVKLWSINQGVS-I---GTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663 (793)
T ss_pred CEEEEEcCCCEEEEEECCCCcE-E---EEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCC
Confidence 3999999999999999986432 2 33333 46799999965444499999999999999999865566778899999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
|+++.|. ++ .+|++++.|++|+|||++..
T Consensus 664 V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 664 VSYVRFV-DS-STLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred EEEEEEe-CC-CEEEEEECCCEEEEEeCCCC
Confidence 9999997 45 68999999999999999853
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=5.2e-21 Score=170.62 Aligned_cols=202 Identities=23% Similarity=0.368 Sum_probs=165.3
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-|..++.|.|++ .++++|+ .++.|.+|++..
T Consensus 9 ~~~i~~~~~~~~~-----------~~l~~~~-----~~g~i~i~~~~~-------------------------------- 40 (289)
T cd00200 9 TGGVTCVAFSPDG-----------KLLATGS-----GDGTIKVWDLET-------------------------------- 40 (289)
T ss_pred CCCEEEEEEcCCC-----------CEEEEee-----cCcEEEEEEeeC--------------------------------
Confidence 3577788898874 4677776 356999998831
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
.........|...+..+.|+|++ .++++++.+|.|++|++.. ......+
T Consensus 41 ---------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~---------------------~~~~~~~ 89 (289)
T cd00200 41 ---------GELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLET---------------------GECVRTL 89 (289)
T ss_pred ---------CCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCc---------------------ccceEEE
Confidence 11234556789999999999998 7899999999999999986 3556677
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
..|...+.++.|++.+. ++++++.+|.|++|++++... . ..+..|...|.+++|+|++. ++++++.++.|++||
T Consensus 90 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~---~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d 163 (289)
T cd00200 90 TGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKC-L---TTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWD 163 (289)
T ss_pred eccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEE-E---EEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEE
Confidence 78888999999999976 888888899999999985332 2 44557888999999999976 888888899999999
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
++.+ .++..+..|...|+++.|+|++ ..|++++.+|.|++||++..+
T Consensus 164 ~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 164 LRTG-KCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred cccc-ccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCc
Confidence 9974 4667778899899999999999 788888889999999998654
No 58
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.1e-22 Score=195.43 Aligned_cols=181 Identities=20% Similarity=0.363 Sum_probs=142.7
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc------ccc----------------ccc-ccc------c---
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN------ALA----------------ESE-TIV------G--- 210 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~------~~~----------------~~~-~~~------~--- 210 (358)
+|.|.|+++.|+++| ++||+||.||.|+||.+..... ... ... ... .
T Consensus 265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 799999999999999 8999999999999999876110 000 000 000 0
Q ss_pred CCCC-------CCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEE
Q 018322 211 QGAP-------QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283 (358)
Q Consensus 211 ~~~~-------~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~ 283 (358)
.... -....+|+..|.||.+.|..|.|+..+ +|+|++.|.+|+||++.. ..+. . ...|...|+||+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~-~~CL---~-~F~HndfVTcVa 416 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGR-KECL---K-VFSHNDFVTCVA 416 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCC-ccee---e-EEecCCeeEEEE
Confidence 0000 013567888999999999999999875 899999999999999965 2222 3 345999999999
Q ss_pred ECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 284 ~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|+|...++|++|+-||.||||++.. ..+.....-..-|++++|.|+| ...+.|+.+|.+++|+.+.++
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISD--KKVVDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred ecccCCCcEeecccccceEEeecCc--CeeEeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCe
Confidence 9998888999999999999999986 3444444444779999999999 999999999999999998765
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=4.1e-21 Score=197.77 Aligned_cols=168 Identities=19% Similarity=0.317 Sum_probs=139.8
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
....+.+|.+.|+++.|+|.++.+|+||+.||+|+|||+.. ...+..+..+ ..+.++.
T Consensus 567 ~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~---------------------~~~~~~~~~~-~~v~~v~ 624 (793)
T PLN00181 567 LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ---------------------GVSIGTIKTK-ANICCVQ 624 (793)
T ss_pred EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC---------------------CcEEEEEecC-CCeEEEE
Confidence 33556789999999999985558999999999999999976 3455556544 5799999
Q ss_pred eCC-CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC-----C
Q 018322 237 WNP-ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-----K 310 (358)
Q Consensus 237 ~s~-~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-----~ 310 (358)
|++ .+. +|++|+.||.|++||+++.... ...+.+|...|.+++|. ++. .|++++.|++|+|||++.+ .
T Consensus 625 ~~~~~g~-~latgs~dg~I~iwD~~~~~~~---~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~ 698 (793)
T PLN00181 625 FPSESGR-SLAFGSADHKVYYYDLRNPKLP---LCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINE 698 (793)
T ss_pred EeCCCCC-EEEEEeCCCeEEEEECCCCCcc---ceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCC
Confidence 965 465 9999999999999999874322 24567899999999997 455 8999999999999999853 2
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.++..+.+|...+++++|+|++ .+|++|+.||.|+||+....
T Consensus 699 ~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 699 TPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred cceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCC
Confidence 4677888999999999999999 89999999999999997654
No 60
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=1e-21 Score=168.69 Aligned_cols=164 Identities=21% Similarity=0.335 Sum_probs=143.4
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
+.+|.++|..+.|++++ ..+.+++.|.+|+.||+.. ++.++.+++|..-+.+++-+..
T Consensus 86 lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~t---------------------G~~~rk~k~h~~~vNs~~p~rr 143 (338)
T KOG0265|consen 86 LKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAET---------------------GKRIRKHKGHTSFVNSLDPSRR 143 (338)
T ss_pred eccccceeEeeeeccCC-CEEEEecCCceEEEEeccc---------------------ceeeehhccccceeeecCcccc
Confidence 34999999999999999 7899999999999999998 6888899999999999996666
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
|..++.||+.||+++|||+|+.... +.+. .+-.++++.|.-.+. .+.+|+-|+.|++||+|.. .....+.+|.
T Consensus 144 g~~lv~SgsdD~t~kl~D~R~k~~~----~t~~-~kyqltAv~f~d~s~-qv~sggIdn~ikvWd~r~~-d~~~~lsGh~ 216 (338)
T KOG0265|consen 144 GPQLVCSGSDDGTLKLWDIRKKEAI----KTFE-NKYQLTAVGFKDTSD-QVISGGIDNDIKVWDLRKN-DGLYTLSGHA 216 (338)
T ss_pred CCeEEEecCCCceEEEEeecccchh----hccc-cceeEEEEEeccccc-ceeeccccCceeeeccccC-cceEEeeccc
Confidence 7657889999999999999974431 2232 356799999998887 8899999999999999984 5788899999
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..|+.|+.+|.| .++.+-+.|.++++||+|-+-
T Consensus 217 DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 217 DTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred CceeeEEeccCC-CccccccccceEEEEEecccC
Confidence 999999999999 899999999999999999653
No 61
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-21 Score=182.44 Aligned_cols=173 Identities=21% Similarity=0.360 Sum_probs=151.2
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
+..+...+.--.-+|...+|.+.. +.+++|++|..|+||++++ ...+..|..|.+-|.
T Consensus 44 tqtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt---------------------~ekV~~FeAH~DyIR 101 (794)
T KOG0276|consen 44 TQTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNT---------------------GEKVKTFEAHSDYIR 101 (794)
T ss_pred cceeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEeccc---------------------ceeeEEeecccccee
Confidence 334444444456788888888877 7999999999999999998 677889999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
+|+.+|..+ +++|+|.|-+|++||.... |.. .+.|.||+.-|.+|+|+|..++.||||+-|++|++|.+.++ .+.
T Consensus 102 ~iavHPt~P-~vLtsSDDm~iKlW~we~~--wa~-~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~n 176 (794)
T KOG0276|consen 102 SIAVHPTLP-YVLTSSDDMTIKLWDWENE--WAC-EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPN 176 (794)
T ss_pred eeeecCCCC-eEEecCCccEEEEeeccCc--eee-eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CCc
Confidence 999999999 9999999999999999653 332 47899999999999999999999999999999999999984 688
Q ss_pred EEEecCCCCeEEEEEeCCC-CcEEEEEeCCCCEEEEeCCCC
Q 018322 314 TSFKAHNADVNVISWNRLA-SCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~-~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.++.+|...||||.+-+.+ ..+|+||++|.+|+|||..+.
T Consensus 177 fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 177 FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence 9999999999999998755 359999999999999998764
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.3e-21 Score=188.30 Aligned_cols=214 Identities=18% Similarity=0.302 Sum_probs=178.0
Q ss_pred hhhccc-ccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCC
Q 018322 59 SLHAFH-IGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSES 137 (358)
Q Consensus 59 ~~~~~~-~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (358)
+||.|. .+-|.-.++|.|.. -.||.|. ++-.|.||.+.
T Consensus 43 li~rFdeHdGpVRgv~FH~~q-----------plFVSGG-----DDykIkVWnYk------------------------- 81 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQ-----------PLFVSGG-----DDYKIKVWNYK------------------------- 81 (1202)
T ss_pred HHhhhhccCCccceeeecCCC-----------CeEEecC-----CccEEEEEecc-------------------------
Confidence 344442 46788888888874 2677666 67789999872
Q ss_pred CCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCC
Q 018322 138 SDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVS 217 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~ 217 (358)
......++.+|-.-|..+.|++.-| .+.++|+|.+|+||+..+
T Consensus 82 ----------------~rrclftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqs-------------------- 124 (1202)
T KOG0292|consen 82 ----------------TRRCLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQS-------------------- 124 (1202)
T ss_pred ----------------cceehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccC--------------------
Confidence 5566688999999999999999996 788999999999999998
Q ss_pred CCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCC-------------------------cccCCCcc
Q 018322 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT-------------------------WNVDPNPF 272 (358)
Q Consensus 218 ~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~-------------------------~~~~~~~~ 272 (358)
.+++..+.||..-|.|..|+|... +++|+|-|.+|++||+..-.+ -.+....+
T Consensus 125 -r~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 125 -RKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred -CceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 789999999999999999999998 999999999999999853111 01112345
Q ss_pred ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 273 ~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.||...|+-++|+|+-+ +|+||++|..|++|.+...+ .-+-+..+|...|.++-|+|.. .+|+|.|.|++|+|||+.
T Consensus 203 EGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred cccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecc
Confidence 68999999999999999 99999999999999887532 2344568999999999999999 899999999999999997
Q ss_pred CCC
Q 018322 352 LLK 354 (358)
Q Consensus 352 ~~~ 354 (358)
+.+
T Consensus 281 kRt 283 (1202)
T KOG0292|consen 281 KRT 283 (1202)
T ss_pred ccc
Confidence 643
No 63
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=1.9e-20 Score=181.88 Aligned_cols=211 Identities=16% Similarity=0.191 Sum_probs=150.4
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+.++++|.|+. ..+|+.|. .++.|.||++..-. ..
T Consensus 74 ~~~V~~lafsP~~----------~~lLASgS-----~DgtIrIWDi~t~~----------------------------~~ 110 (568)
T PTZ00420 74 TSSILDLQFNPCF----------SEILASGS-----EDLTIRVWEIPHND----------------------------ES 110 (568)
T ss_pred CCCEEEEEEcCCC----------CCEEEEEe-----CCCeEEEEECCCCC----------------------------cc
Confidence 4578899998863 14677776 56699999884100 00
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
.... ..+ ...+.+|.+.|++|+|+|.+..+||+++.|++|+|||+.. ...+..+
T Consensus 111 ~~~i---~~p--~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t---------------------g~~~~~i 164 (568)
T PTZ00420 111 VKEI---KDP--QCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN---------------------EKRAFQI 164 (568)
T ss_pred cccc---ccc--eEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCC---------------------CcEEEEE
Confidence 0000 012 2345689999999999999867889999999999999987 3344445
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEE-----EEECCCCCCEEEEEECCC-
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED-----LQWSPTEPDVFASCSVDG- 299 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~-----v~~sp~~~~~las~s~Dg- 299 (358)
. |...|++++|+|++. +|++++.|+.|+|||++++.. . ..+.+|.+.+.. ..|++++. +|++++.++
T Consensus 165 ~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~-i---~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~ 237 (568)
T PTZ00420 165 N-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEI-A---SSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKN 237 (568)
T ss_pred e-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcE-E---EEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCC
Confidence 4 557899999999998 999999999999999987432 2 457788776543 23457777 788877764
Q ss_pred ---cEEEEECCCCCCeeEEEecCC--CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 300 ---HIAIWDTRVGKSALTSFKAHN--ADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 300 ---~I~iwD~r~~~~~~~~~~~h~--~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.|+|||+|....++..+..+. +.+. ..|.++...++++|+.|++|++|+++..
T Consensus 238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~-p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVTMSIDNASAPLI-PHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CccEEEEEECCCCCCceEEEEecCCccceE-EeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 799999997555665553322 2222 2444443389999999999999999754
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.88 E-value=1.7e-20 Score=167.34 Aligned_cols=161 Identities=29% Similarity=0.529 Sum_probs=138.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
.....|.+.|+++.|+|++ .++++++.+|.|++||+.. .+++..+..|...+.+++|+
T Consensus 129 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~---------------------~~~~~~~~~~~~~i~~~~~~ 186 (289)
T cd00200 129 TTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRT---------------------GKCVATLTGHTGEVNSVAFS 186 (289)
T ss_pred EEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccc---------------------cccceeEecCccccceEEEC
Confidence 3344799999999999987 7888888899999999975 45666777888899999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|++. .|++++.++.|++||++.... ...+..|...+.+++|+|++. ++++++.+|.|++||++.+ .+...+..
T Consensus 187 ~~~~-~l~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~-~~~~~~~~ 259 (289)
T cd00200 187 PDGE-KLLSSSSDGTIKLWDLSTGKC----LGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTG-ECVQTLSG 259 (289)
T ss_pred CCcC-EEEEecCCCcEEEEECCCCce----ecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCc-eeEEEccc
Confidence 9997 888888899999999976322 245557888999999999966 8888888999999999974 46677788
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
|...|.+++|+|++ .+|++++.||.|++|+
T Consensus 260 ~~~~i~~~~~~~~~-~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 260 HTNSVTSLAWSPDG-KRLASGSADGTIRIWD 289 (289)
T ss_pred cCCcEEEEEECCCC-CEEEEecCCCeEEecC
Confidence 99999999999998 8999999999999996
No 65
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=1.4e-21 Score=175.16 Aligned_cols=169 Identities=18% Similarity=0.298 Sum_probs=145.6
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
...+.+|.-.|+.+.++|.. ..+++++.|..|+||.... .........|..+|+.+..
T Consensus 254 l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~---------------------~s~~~~~~~h~~~V~~ls~ 311 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPL---------------------SSEPTSSRPHEEPVTGLSL 311 (506)
T ss_pred hhhccCcceEEEEEEeccch-hheeecCCcceEEeecccc---------------------ccCccccccccccceeeee
Confidence 36778999999999999998 7899999999999999887 2344567789999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
+|.+. ||++++.||+..+.|++++....+ ..-....-.+++.+|||+|- +|++|..||.|+|||+.++ ..+..|.
T Consensus 312 h~tge-YllsAs~d~~w~Fsd~~~g~~lt~--vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~-~~~a~Fp 386 (506)
T KOG0289|consen 312 HPTGE-YLLSASNDGTWAFSDISSGSQLTV--VSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQ-TNVAKFP 386 (506)
T ss_pred ccCCc-EEEEecCCceEEEEEccCCcEEEE--EeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCc-cccccCC
Confidence 99999 999999999999999988543221 00111223589999999998 9999999999999999985 4777889
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+|.++|..|+|+.+| ++||++++|+.|++||||+.+
T Consensus 387 ght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 387 GHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred CCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhc
Confidence 999999999999999 999999999999999999875
No 66
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.5e-21 Score=183.08 Aligned_cols=160 Identities=22% Similarity=0.433 Sum_probs=137.2
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
|.+.|-+++|.. ..+.+|+.+|.|..+|++.. .....++.+|..+|..|.|++++.
T Consensus 259 h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~--------------------~~~~~~~~~H~qeVCgLkws~d~~- 314 (484)
T KOG0305|consen 259 HASRVGSLAWNS---SVLSSGSRDGKILNHDVRIS--------------------QHVVSTLQGHRQEVCGLKWSPDGN- 314 (484)
T ss_pred cCceeEEEeccC---ceEEEecCCCcEEEEEEecc--------------------hhhhhhhhcccceeeeeEECCCCC-
Confidence 999999999993 68999999999999999882 222224889999999999999998
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE--CCCcEEEEECCCCCC----------
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWDTRVGKS---------- 311 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD~r~~~~---------- 311 (358)
+||+|+.|+.++|||...... ...+..|++.|..++|+|-...+||+|+ .|+.|++||+.++..
T Consensus 315 ~lASGgnDN~~~Iwd~~~~~p----~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQV 390 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLSPEP----KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQV 390 (484)
T ss_pred eeccCCCccceEeccCCCccc----cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCce
Confidence 999999999999999955322 3678899999999999999888999976 599999999976421
Q ss_pred --------------------------------eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 312 --------------------------------ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 312 --------------------------------~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+..+.+|...|..++++|+| ..|++|+.|.++++|++=.
T Consensus 391 csL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 391 CSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFD 462 (484)
T ss_pred eeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccC
Confidence 223457899999999999999 9999999999999998854
No 67
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.6e-21 Score=161.94 Aligned_cols=177 Identities=20% Similarity=0.335 Sum_probs=146.7
Q ss_pred eEEEEEecCCCceeEEEEcC-CCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMT-QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p-~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
.+...+.+|.|+|+.+.|.. .-..+||+++.||+|.||.-... .......+..|...|.+
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-------------------~w~k~~e~~~h~~SVNs 107 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-------------------RWTKAYEHAAHSASVNS 107 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-------------------chhhhhhhhhhccccee
Confidence 66788999999999999964 33389999999999999998773 24556677889999999
Q ss_pred EEeCCCCCC-eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC-------------CEEEEEECCCc
Q 018322 235 IDWNPITTG-RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-------------DVFASCSVDGH 300 (358)
Q Consensus 235 l~~s~~~~~-~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-------------~~las~s~Dg~ 300 (358)
++|.|.+.| .|++|+.||.|.|.+++..+.+.. .+....|.-.|++++|.|... ..|++|+.|..
T Consensus 108 V~wapheygl~LacasSDG~vsvl~~~~~g~w~t-~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~ 186 (299)
T KOG1332|consen 108 VAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT-SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL 186 (299)
T ss_pred ecccccccceEEEEeeCCCcEEEEEEcCCCCccc-hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccc
Confidence 999999766 678889999999999988655543 355678999999999999721 25999999999
Q ss_pred EEEEECCCCCCee-EEEecCCCCeEEEEEeCCC---CcEEEEEeCCCCEEEEeCCC
Q 018322 301 IAIWDTRVGKSAL-TSFKAHNADVNVISWNRLA---SCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 301 I~iwD~r~~~~~~-~~~~~h~~~V~~i~~~p~~---~~~lasgs~Dg~i~iwDlr~ 352 (358)
|+||+.....-.+ .++.+|...|+.++|.|.. ...||+||.||+|.||-.+.
T Consensus 187 VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 187 VKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred eeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 9999998753322 3478999999999999964 35799999999999998763
No 68
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.7e-21 Score=173.88 Aligned_cols=204 Identities=19% Similarity=0.220 Sum_probs=165.4
Q ss_pred ccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEec
Q 018322 84 NEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVA 163 (358)
Q Consensus 84 ~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (358)
..+|...|+++|| ....|++|.|+ ...+...+-+
T Consensus 88 ~s~n~G~~l~ag~-----i~g~lYlWels-----------------------------------------sG~LL~v~~a 121 (476)
T KOG0646|consen 88 ASSNLGYFLLAGT-----ISGNLYLWELS-----------------------------------------SGILLNVLSA 121 (476)
T ss_pred ecCCCceEEEeec-----ccCcEEEEEec-----------------------------------------cccHHHHHHh
Confidence 4567778999998 45699999994 4455556678
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC-C
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT-T 242 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~ 242 (358)
|...|+|++|+-++ .+|+|||.||.|++|.+........+. ...|+..|..|+-+|+.+...+.+ .
T Consensus 122 HYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~------------~~~p~~~f~~HtlsITDl~ig~Gg~~ 188 (476)
T KOG0646|consen 122 HYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDH------------SVKPLHIFSDHTLSITDLQIGSGGTN 188 (476)
T ss_pred hccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCC------------CccceeeeccCcceeEEEEecCCCcc
Confidence 99999999999999 799999999999999997744433322 358899999999999999988763 3
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC------------
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK------------ 310 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~------------ 310 (358)
.+|+|+|.|.+|++||+..+ ... ..+ .....+.++..+|.+. .+..|+.+|.|.+.++....
T Consensus 189 ~rl~TaS~D~t~k~wdlS~g-~LL---lti-~fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~ 262 (476)
T KOG0646|consen 189 ARLYTASEDRTIKLWDLSLG-VLL---LTI-TFPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH 262 (476)
T ss_pred ceEEEecCCceEEEEEeccc-eee---EEE-ecCCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccc
Confidence 39999999999999999763 322 111 2356899999999998 99999999999999875422
Q ss_pred ---CeeEEEecCCC--CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 311 ---SALTSFKAHNA--DVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 311 ---~~~~~~~~h~~--~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
..+..+.+|.. .|+|++.+-+| .+|++|+.||.|+|||+.+.
T Consensus 263 ~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 263 EENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchH
Confidence 13445677877 99999999999 99999999999999998754
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=2.2e-22 Score=174.47 Aligned_cols=173 Identities=20% Similarity=0.249 Sum_probs=147.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
...++....+.|.+|+|++ .++++|+.||.|-+|++.+.....+- ..+..-.|--+...|.|++|+
T Consensus 207 ~IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDL-------------kYQAqd~fMMmd~aVlci~FS 272 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDL-------------KYQAQDNFMMMDDAVLCISFS 272 (508)
T ss_pred heecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhh-------------hhhhhcceeecccceEEEeec
Confidence 4566778889999999999 89999999999999999873211100 122333455577899999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccc-cCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
.+.. .||+|+.||.|++|.+.++ .+. +.|. .|+..|++++|+.++. .+++++.|.++||.-+.++ +++..++
T Consensus 273 RDsE-MlAsGsqDGkIKvWri~tG-~Cl---RrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSG-K~LKEfr 345 (508)
T KOG0275|consen 273 RDSE-MLASGSQDGKIKVWRIETG-QCL---RRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSG-KCLKEFR 345 (508)
T ss_pred ccHH-HhhccCcCCcEEEEEEecc-hHH---HHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccc-hhHHHhc
Confidence 9998 9999999999999999984 433 5565 7999999999999998 8999999999999999996 5888999
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+|.+-||...|.++| ..+++++.||+|++|+..+.
T Consensus 346 GHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~Ktt 380 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTT 380 (508)
T ss_pred CccccccceEEcCCC-CeEEEecCCccEEEecCcch
Confidence 999999999999999 99999999999999998764
No 70
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=2.9e-21 Score=166.62 Aligned_cols=183 Identities=14% Similarity=0.236 Sum_probs=143.9
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCC-CCcEEEcCCCCCeEEEEe
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ-SPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~ 237 (358)
..+..|.+++.+.+|+|+| .++|||+.|..|+|+|+...+......... ....... -.+.++..|..+|.+|+|
T Consensus 106 ~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~----~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMI----SGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred EEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhc----cCCcccCCceEeehhhccCcccceee
Confidence 4566799999999999999 899999999999999998643332111110 0011122 345678899999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF- 316 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~- 316 (358)
+|... .|++|+.|++|++||+....... .........+|.+|+|+|.|. +++.|....++++||+.+- ++....
T Consensus 181 HPre~-ILiS~srD~tvKlFDfsK~saKr--A~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~-Qcfvsan 255 (430)
T KOG0640|consen 181 HPRET-ILISGSRDNTVKLFDFSKTSAKR--AFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTY-QCFVSAN 255 (430)
T ss_pred cchhh-eEEeccCCCeEEEEecccHHHHH--HHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccce-eEeeecC
Confidence 99998 99999999999999996532211 122233467899999999999 8999999999999999984 444433
Q ss_pred --ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 317 --KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 317 --~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
..|...|+++.+++.+ .+.+||+.||.|+|||--+
T Consensus 256 Pd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS 292 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVS 292 (430)
T ss_pred cccccccceeEEEecCCc-cEEEEeccCCcEEeecccc
Confidence 5789999999999999 9999999999999999643
No 71
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=8.6e-23 Score=192.82 Aligned_cols=171 Identities=24% Similarity=0.435 Sum_probs=155.4
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
+|.-...+.+|.++|.+++|.+.. .+|++|+.+|+|++||+.. .+.+.++.||...+.
T Consensus 59 kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDlee---------------------Ak~vrtLtgh~~~~~ 116 (825)
T KOG0267|consen 59 KPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEE---------------------AKIVRTLTGHLLNIT 116 (825)
T ss_pred CCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhh---------------------hhhhhhhhccccCcc
Confidence 555556688999999999999988 7999999999999999987 567778999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
.|+|+|.+. ++|+|+.|+.+++||++..+. ...+.+|...|..+.|+|+|+ ++++++.|.+++|||.+.+ ..+
T Consensus 117 sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc----~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~ag-k~~ 189 (825)
T KOG0267|consen 117 SVDFHPYGE-FFASGSTDTDLKIWDIRKKGC----SHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAG-KLS 189 (825)
T ss_pred eeeeccceE-EeccccccccceehhhhccCc----eeeecCCcceeEEEeecCCCc-eeeccCCcceeeeeccccc-ccc
Confidence 999999998 999999999999999986454 367888999999999999999 9999999999999999985 577
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..|..|...|.++.|+|.. .++++||.|++|++||++++.
T Consensus 190 ~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 190 KEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred cccccccccccccccCchh-hhhccCCCCceeeeeccceeE
Confidence 7889999999999999999 999999999999999999653
No 72
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=9.4e-21 Score=162.46 Aligned_cols=170 Identities=23% Similarity=0.373 Sum_probs=142.4
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
..+|.-.|..+.|-|....+|.+++-|.++++||.++ .+....| ...+.||+-+|+|-
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT---------------------lQ~a~~F-~me~~VYshamSp~ 154 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT---------------------LQEAVDF-KMEGKVYSHAMSPM 154 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeeccc---------------------ceeeEEe-ecCceeehhhcChh
Confidence 3458899999999998888999999999999999988 3333444 23568899999986
Q ss_pred CC--CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE---
Q 018322 241 TT--GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--- 315 (358)
Q Consensus 241 ~~--~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~--- 315 (358)
.. .++|+|..+-.|+|.|+.+ +... ..+.||.+.|.+|.|+|....+||+|+.||.||+||+|....+...
T Consensus 155 a~sHcLiA~gtr~~~VrLCDi~S-Gs~s---H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~ 230 (397)
T KOG4283|consen 155 AMSHCLIAAGTRDVQVRLCDIAS-GSFS---HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQ 230 (397)
T ss_pred hhcceEEEEecCCCcEEEEeccC-Ccce---eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeec
Confidence 53 2788899999999999988 4443 7899999999999999999999999999999999999974333332
Q ss_pred -----------EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 316 -----------FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 316 -----------~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
-.+|.+.|+.++|..++ .++++++.|..+++|+..+++..+
T Consensus 231 hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 231 HNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred ccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCcccc
Confidence 34677889999999999 999999999999999999887654
No 73
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.2e-21 Score=181.52 Aligned_cols=172 Identities=22% Similarity=0.321 Sum_probs=146.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe-
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW- 237 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~- 237 (358)
.++..|...||.|..+..+ ..|+++|.|.+|++|+..... .-+..++..|.+-|.||+.
T Consensus 67 asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~-------------------~~c~stir~H~DYVkcla~~ 126 (735)
T KOG0308|consen 67 ASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN-------------------TFCMSTIRTHKDYVKCLAYI 126 (735)
T ss_pred hhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc-------------------chhHhhhhcccchheeeeec
Confidence 5677899999999999988 689999999999999998731 2456678899999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCC------cccCCCccc-cCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDAT------WNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~------~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
.+... ++|||+-|+.|+|||++++.. -.+....+. |+..+|++++.++++. +|++|+..+.|++||.|+.
T Consensus 127 ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~- 203 (735)
T KOG0308|consen 127 AKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTC- 203 (735)
T ss_pred ccCce-eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcccceEEeccccc-
Confidence 66665 999999999999999987422 011112233 8899999999999997 9999999999999999995
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+..+++|...|.++..+++| ..++|+|.||+|++|||+..+
T Consensus 204 ~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 204 KKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred cceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccc
Confidence 4666788999999999999999 999999999999999998754
No 74
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.1e-20 Score=177.19 Aligned_cols=160 Identities=24% Similarity=0.384 Sum_probs=143.0
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC-CCCCeEEEEeCCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNPITTG 243 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~ 243 (358)
...|+++.|++.| .+||+|..+|.|.|||... .+.+..+.+ |...|-+|+|+. .
T Consensus 217 ~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~---------------------~k~~~~~~~~h~~rvg~laW~~---~ 271 (484)
T KOG0305|consen 217 EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKE---------------------QKKTRTLRGSHASRVGSLAWNS---S 271 (484)
T ss_pred CCceEEEEECCCC-CEEEEeecCCeEEEEehhh---------------------ccccccccCCcCceeEEEeccC---c
Confidence 8999999999999 7999999999999999987 355556667 999999999993 3
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.+.+|+.++.|..+|++...... ..+.+|...|..++|++++. .||+|+.|+.+.|||.+. ..+...+..|.++|
T Consensus 272 ~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAV 346 (484)
T KOG0305|consen 272 VLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAV 346 (484)
T ss_pred eEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCC-ccccEEEeccceee
Confidence 89999999999999999865543 35888999999999999999 999999999999999976 46888999999999
Q ss_pred EEEEEeCCCCcEEEEEe--CCCCEEEEeCCCCC
Q 018322 324 NVISWNRLASCLLASGS--DDGTFSIHDLRLLK 354 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs--~Dg~i~iwDlr~~~ 354 (358)
.+++|+|....+||+|+ .|++|++||..++.
T Consensus 347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred eEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 99999999889999986 59999999998765
No 75
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.9e-20 Score=160.80 Aligned_cols=169 Identities=18% Similarity=0.223 Sum_probs=132.5
Q ss_pred EEEecCCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 159 LRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
-.+..|.|.|+++.|.+.. ...|.+|++||.|.+|+... ...+..+++|...|+.|+.
T Consensus 77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---------------------W~~~~slK~H~~~Vt~lsi 135 (362)
T KOG0294|consen 77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---------------------WELLKSLKAHKGQVTDLSI 135 (362)
T ss_pred cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---------------------eEEeeeecccccccceeEe
Confidence 4456799999999998754 23688999999999999987 6788899999999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCccc-CCCc------cc----------------------------cCCCcEEEE
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNV-DPNP------FI----------------------------GHSASVEDL 282 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~-~~~~------~~----------------------------~h~~~V~~v 282 (358)
+|.+. +.++.+.|+.+++|++-.+....+ .+.. +. .....+.++
T Consensus 136 HPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~ 214 (362)
T KOG0294|consen 136 HPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCA 214 (362)
T ss_pred cCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceee
Confidence 99998 888999999999999976432110 0000 00 001123344
Q ss_pred EECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEE--eCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 283 QWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW--NRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 283 ~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~--~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.|-.. ..+++|+.++.|++||..+ ..+...+.+|...|-.+.+ +|.+ .+|+|+|.||.|+|||++.-
T Consensus 215 ~~l~~--~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 215 TFLDG--SELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eecCC--ceEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEcccc
Confidence 44332 3799999999999999998 4688889999999999985 5566 89999999999999999876
No 76
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.86 E-value=6e-20 Score=168.26 Aligned_cols=171 Identities=18% Similarity=0.303 Sum_probs=140.5
Q ss_pred CCCeE-EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc---CC
Q 018322 153 GTPIL-QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG---GH 228 (358)
Q Consensus 153 ~~~~~-~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h 228 (358)
++|+. ......|..-|+|+||+|+| .+|||.+.||+|.|||=.. +..+..+. +|
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGkt---------------------ge~vg~l~~~~aH 234 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKT---------------------GEKVGELEDSDAH 234 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCC---------------------ccEEEEecCCCCc
Confidence 35544 35667799999999999999 7999999999999999876 45566666 89
Q ss_pred CCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcccc-CC--CcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 229 KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HS--ASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 229 ~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~--~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
++.|++|+|+|++. +|+|++.|.+++|||+.+. ... +++.. .+ ..-..+-|- .. .|++.+.+|+|.+++
T Consensus 235 kGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~-slv---~t~~~~~~v~dqqvG~lWq--kd-~lItVSl~G~in~ln 306 (603)
T KOG0318|consen 235 KGSIFALSWSPDST-QFLTVSADKTIKIWDVSTN-SLV---STWPMGSTVEDQQVGCLWQ--KD-HLITVSLSGTINYLN 306 (603)
T ss_pred cccEEEEEECCCCc-eEEEecCCceEEEEEeecc-ceE---EEeecCCchhceEEEEEEe--CC-eEEEEEcCcEEEEec
Confidence 99999999999998 9999999999999999874 222 22221 11 222334464 33 799999999999999
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
...+. +...+.+|...|+++..+|++ .+|+||+.||.|.-||+.++..
T Consensus 307 ~~d~~-~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 307 PSDPS-VLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred ccCCC-hhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccc
Confidence 98865 888899999999999999999 9999999999999999987653
No 77
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2e-21 Score=187.09 Aligned_cols=162 Identities=22% Similarity=0.349 Sum_probs=147.0
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-...|..++|+|..| .+.++-..|.|++||.+. ...+..|..|.++|.+++|+|.++
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM---------------------~tli~rFdeHdGpVRgv~FH~~qp- 64 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRM---------------------GTLIDRFDEHDGPVRGVDFHPTQP- 64 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhh---------------------hhHHhhhhccCCccceeeecCCCC-
Confidence 356788999999997 666778899999999987 577788999999999999999999
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
+|+||+.|..|++|+..+ .++ ..++.||-..|..+.|++..+ .++|+|+|.+||||+..+ +.++..+.+|+.-|
T Consensus 65 lFVSGGDDykIkVWnYk~-rrc---lftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqs-r~~iavltGHnHYV 138 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKT-RRC---LFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQS-RKCIAVLTGHNHYV 138 (1202)
T ss_pred eEEecCCccEEEEEeccc-cee---hhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccC-CceEEEEecCceEE
Confidence 999999999999999977 333 378899999999999999999 999999999999999998 46999999999999
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.|.+|+|.. .+++|+|-|.+|+|||+.-++.
T Consensus 139 McAqFhptE-DlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 139 MCAQFHPTE-DLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred EeeccCCcc-ceEEEecccceEEEEeecchhc
Confidence 999999988 8999999999999999976654
No 78
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=1.2e-20 Score=161.45 Aligned_cols=215 Identities=21% Similarity=0.323 Sum_probs=160.2
Q ss_pred EEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCcee
Q 018322 90 AYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVN 169 (358)
Q Consensus 90 ~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~ 169 (358)
..|++||+..+. +|+|+++++. ++ ...++...+..|.|+|+
T Consensus 27 icFlvgTnslK~-dNqVhll~~d-------------------------------~e-------~s~l~skvf~h~agEvw 67 (370)
T KOG1007|consen 27 ICFLVGTNSLKE-DNQVHLLRLD-------------------------------SE-------GSELLSKVFFHHAGEVW 67 (370)
T ss_pred eEEEEeccccCC-cceeEEEEec-------------------------------Cc-------cchhhhhhhhcCCccee
Confidence 789999999985 5999999983 00 12334455667889999
Q ss_pred EEEEcCCCCcEEEEEeCC-------CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeEEEEeCCCC
Q 018322 170 RIRAMTQNPHICASWADT-------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPIT 241 (358)
Q Consensus 170 ~i~~~p~~~~~lat~s~d-------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~ 241 (358)
.|+.+|..+.+|+|+..+ ..+.||.+......... .+...+..+. .+-+.+.|+.|.|++
T Consensus 68 ~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~------------~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 68 DLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS------------STLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc------------chhhHhhcCCHHHhCceeeEEEcCCC
Confidence 999999999999998763 24679999875443111 1233444444 345589999999988
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCccc--CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-ec
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNV--DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KA 318 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~ 318 (358)
. .|++-. +..|.+|++.++..... ....-.++....++-+|+|.+..-.+....|++++.||+|+.. +...+ .+
T Consensus 136 ~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~-~~~sI~dA 212 (370)
T KOG1007|consen 136 D-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMK-KNNSIEDA 212 (370)
T ss_pred C-eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchh-hhcchhhh
Confidence 7 888777 88999999987554221 1122234677889999999543334445568999999999854 44444 88
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRLV 358 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l~ 358 (358)
|...|..+.|||+-.++|+||++||.|+|||.|+.+.|+.
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 9999999999999989999999999999999999998863
No 79
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=1.3e-19 Score=172.33 Aligned_cols=234 Identities=19% Similarity=0.314 Sum_probs=188.0
Q ss_pred CCCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCC
Q 018322 45 EEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPN 124 (358)
Q Consensus 45 ~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~ 124 (358)
+.|.-+-+.-..-..+|+|+..=|+-+++|-|++ .+|++|. .|-|.||+..+- ..
T Consensus 75 E~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng-----------~~fav~~------gn~lqiw~~P~~---~~----- 129 (893)
T KOG0291|consen 75 ERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNG-----------KFFAVGC------GNLLQIWHAPGE---IK----- 129 (893)
T ss_pred CCCcEEEEecccceeeEEEeecCccceEEECCCC-----------cEEEEEe------cceeEEEecCcc---hh-----
Confidence 4555577777778899999999999999999996 3666665 468889987421 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeE-EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 018322 125 KPSNDDEDVDSESSDSDEDSDDDEEGGSGTPIL-QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALA 203 (358)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~ 203 (358)
++ -.|+. ..+..+|...|.+|.|+.+. ++|++|+.|-+++||.+....
T Consensus 130 ----------------------~~----~~pFvl~r~~~g~fddi~si~Ws~DS-r~l~~gsrD~s~rl~~v~~~k---- 178 (893)
T KOG0291|consen 130 ----------------------NE----FNPFVLHRTYLGHFDDITSIDWSDDS-RLLVTGSRDLSARLFGVDGNK---- 178 (893)
T ss_pred ----------------------cc----cCcceEeeeecCCccceeEEEeccCC-ceEEeccccceEEEEEecccc----
Confidence 01 14544 46778899999999999998 899999999999999998731
Q ss_pred cccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCC---------------------
Q 018322 204 ESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD--------------------- 262 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~--------------------- 262 (358)
.-....+.+|++.|.+.-|..+.. .|.+.+.||.|++|.....
T Consensus 179 ---------------~~~~~~l~gHkd~VvacfF~~~~~-~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~ 242 (893)
T KOG0291|consen 179 ---------------NLFTYALNGHKDYVVACFFGANSL-DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDE 242 (893)
T ss_pred ---------------ccceEeccCCCcceEEEEeccCcc-eEEEEecCceEEEEEecCCCcccccccccccccccccccc
Confidence 223456789999998888888877 8999999999999987610
Q ss_pred ---C-----Cccc-------------------------------------------------------------------
Q 018322 263 ---A-----TWNV------------------------------------------------------------------- 267 (358)
Q Consensus 263 ---~-----~~~~------------------------------------------------------------------- 267 (358)
. .|..
T Consensus 243 ~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWi 322 (893)
T KOG0291|consen 243 DGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWI 322 (893)
T ss_pred cchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEE
Confidence 0 0000
Q ss_pred -------------------CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEE
Q 018322 268 -------------------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328 (358)
Q Consensus 268 -------------------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~ 328 (358)
.....++|...+++++++|+|+ ++|+|+.||.|+|||.+++ -|..++..|.+.|+.++|
T Consensus 323 A~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f 400 (893)
T KOG0291|consen 323 AFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQF 400 (893)
T ss_pred EEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCc-eEEEEeccCCCceEEEEE
Confidence 0011127899999999999999 9999999999999999985 599999999999999999
Q ss_pred eCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 329 NRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 329 ~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+..+ +.|++.+.||+|+.||+...
T Consensus 401 ~~~g-~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 401 TARG-NVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred EecC-CEEEEeecCCeEEeeeeccc
Confidence 9999 99999999999999999654
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4.2e-21 Score=174.38 Aligned_cols=166 Identities=22% Similarity=0.341 Sum_probs=143.6
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.....|.++.|..+| .++|+|...|.|+|||+.. ...+..+.+|+.++..+.|+|.+.
T Consensus 66 rFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~---------------------r~iLR~~~ah~apv~~~~f~~~d~ 123 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKS---------------------RVILRQLYAHQAPVHVTKFSPQDN 123 (487)
T ss_pred hhccceeEEEeecCC-eEEEccCCcCcEEEecccc---------------------HHHHHHHhhccCceeEEEecccCC
Confidence 457889999999999 8999999999999999654 345667889999999999999988
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
..|++|+.|+.+++||+.+.- . ...+.+|+..|.+.+|+|...++++|||.||.||+||+|+....+..+ .|+.+
T Consensus 124 t~l~s~sDd~v~k~~d~s~a~--v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~p 198 (487)
T KOG0310|consen 124 TMLVSGSDDKVVKYWDLSTAY--V--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCP 198 (487)
T ss_pred eEEEecCCCceEEEEEcCCcE--E--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCc
Confidence 789999999999999997633 2 356889999999999999998899999999999999999964455555 59999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
|.++.+-|.| .+|||++. ..|+|||+.++.+.+
T Consensus 199 Ve~vl~lpsg-s~iasAgG-n~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 199 VESVLALPSG-SLIASAGG-NSVKVWDLTTGGQLL 231 (487)
T ss_pred eeeEEEcCCC-CEEEEcCC-CeEEEEEecCCceeh
Confidence 9999999999 89998875 589999999776543
No 81
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.86 E-value=6.5e-21 Score=172.96 Aligned_cols=169 Identities=20% Similarity=0.316 Sum_probs=138.7
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.+..+..+|..+|..++|++.+ ..|.|+|.|+.|++||+.+ ++.+..|.. ...++|+
T Consensus 249 ~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtET---------------------G~~~~~f~~-~~~~~cv 305 (503)
T KOG0282|consen 249 RCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTET---------------------GQVLSRFHL-DKVPTCV 305 (503)
T ss_pred ceehhhhcchhhhhhhhccccC-Ceeeeeecceeeeeecccc---------------------ceEEEEEec-CCCceee
Confidence 4557788999999999999999 7888999999999999988 566666643 2378899
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCC---------------------------------------------------
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDAT--------------------------------------------------- 264 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~--------------------------------------------------- 264 (358)
.|+|++.+.|++|+.|+.|+.||++++..
T Consensus 306 kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~ 385 (503)
T KOG0282|consen 306 KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEM 385 (503)
T ss_pred ecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhh
Confidence 99999977999999999999999998520
Q ss_pred -------------cc--------------------cCCCccccCC--CcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 265 -------------WN--------------------VDPNPFIGHS--ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 265 -------------~~--------------------~~~~~~~~h~--~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
+. .....|.||. +.-..+.|||+|. +|++|..||.+.+||.++.
T Consensus 386 hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 386 HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeechhh
Confidence 00 0001122443 2334578999999 9999999999999999984
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
..+..+.+|...+..+.|+|..+..+|||+-||.|++||
T Consensus 465 -kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 -KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 577788999999999999999989999999999999996
No 82
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=5.8e-20 Score=174.52 Aligned_cols=230 Identities=18% Similarity=0.300 Sum_probs=182.3
Q ss_pred CCCceeeeChhHHHhhhcccc-cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCC
Q 018322 45 EEGEELQCDPTAYNSLHAFHI-GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVP 123 (358)
Q Consensus 45 ~~~~~l~~~~~~Y~~~~~~~~-~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~ 123 (358)
+.||-+.||-..-+.+-+... +-.--+++..||+ .++|+|+ .++.+.+|++.-+..
T Consensus 432 k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-----------~g~vT~s-----aDktVkfWdf~l~~~------- 488 (888)
T KOG0306|consen 432 KNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-----------KGFVTGS-----ADKTVKFWDFKLVVS------- 488 (888)
T ss_pred cCCceEEEEeehhhhhhhhhccccceeeeeecCCC-----------CceEEec-----CCcEEEEEeEEEEec-------
Confidence 456666666444444444332 2233367778886 4678887 677999998853211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeE---EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 018322 124 NKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPIL---QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN 200 (358)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~ 200 (358)
+ .+.....+ +.+...-+..|.|++++|++ .+||.+--|.+|+||-+..
T Consensus 489 ------------------------~-~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDt--- 539 (888)
T KOG0306|consen 489 ------------------------V-PGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDT--- 539 (888)
T ss_pred ------------------------c-CcccceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecc---
Confidence 0 00112222 23455567999999999999 8999999999999999987
Q ss_pred ccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEE
Q 018322 201 ALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVE 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~ 280 (358)
.+....+.||.-+|.|++.+|++. +++|||.|.+|++|-+.- |.+. +.+.+|..+|.
T Consensus 540 ------------------lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdF-GDCH---KS~fAHdDSvm 596 (888)
T KOG0306|consen 540 ------------------LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDF-GDCH---KSFFAHDDSVM 596 (888)
T ss_pred ------------------eeeeeeecccccceeEEeccCCcC-eEEeccCCCceEEecccc-chhh---hhhhcccCcee
Confidence 566678899999999999999998 999999999999999865 4444 67889999999
Q ss_pred EEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 281 DLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 281 ~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+|+|.|... +|.+||.|+.|+-||-.. ...++.+.+|...|+|++..|+| .+++|+|.|.+|++|....
T Consensus 597 ~V~F~P~~~-~FFt~gKD~kvKqWDg~k-Fe~iq~L~~H~~ev~cLav~~~G-~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 597 SVQFLPKTH-LFFTCGKDGKVKQWDGEK-FEEIQKLDGHHSEVWCLAVSPNG-SFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEEEcccce-eEEEecCcceEEeechhh-hhhheeeccchheeeeeEEcCCC-CeEEeccCCceeEeeeccC
Confidence 999999776 999999999999999876 45888999999999999999999 9999999999999997643
No 83
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.86 E-value=1.8e-20 Score=158.78 Aligned_cols=170 Identities=21% Similarity=0.343 Sum_probs=147.8
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.+.+|..+++.|+|+..| .+|.+++.|.++.+|--.+ +..+.++.||++.|+|++..-
T Consensus 5 ~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~n---------------------GerlGty~GHtGavW~~Did~ 62 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLN---------------------GERLGTYDGHTGAVWCCDIDW 62 (327)
T ss_pred ccccCccccceEEecCCC-cEEEEecCCCCceEEEecC---------------------CceeeeecCCCceEEEEEecC
Confidence 467899999999999999 7999999999999998765 577889999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCccc-------------------------------------------------CCC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNV-------------------------------------------------DPN 270 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~-------------------------------------------------~~~ 270 (358)
+.. +|++|+.|.+++|||+.++..... +..
T Consensus 63 ~s~-~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 63 DSK-HLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred Ccc-eeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 888 999999999999999988531100 011
Q ss_pred ccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 271 PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 271 ~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.+..+.+.++.+-|.|.+. .|++|..||.|.+||++++...+.+...|...|+.|+++|+. .+++|||.|.+-++||.
T Consensus 142 kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDV 219 (327)
T ss_pred EecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeec
Confidence 1224557788899999999 999999999999999999877777778899999999999999 99999999999999999
Q ss_pred CCCC
Q 018322 351 RLLK 354 (358)
Q Consensus 351 r~~~ 354 (358)
+++.
T Consensus 220 ~tl~ 223 (327)
T KOG0643|consen 220 RTLE 223 (327)
T ss_pred ccee
Confidence 9875
No 84
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.85 E-value=1.6e-20 Score=157.62 Aligned_cols=210 Identities=20% Similarity=0.301 Sum_probs=160.6
Q ss_pred HhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCC
Q 018322 58 NSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSES 137 (358)
Q Consensus 58 ~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (358)
+-||++...--.-++.|-.| +.||+.|.|-- -|.|+++. +++.
T Consensus 92 delhsf~hkhivk~~af~~d-----------s~~lltgg~ek-----llrvfdln---~p~A------------------ 134 (334)
T KOG0278|consen 92 DELHSFEHKHIVKAVAFSQD-----------SNYLLTGGQEK-----LLRVFDLN---RPKA------------------ 134 (334)
T ss_pred hhhhhhhhhheeeeEEeccc-----------chhhhccchHH-----Hhhhhhcc---CCCC------------------
Confidence 56788888888888888877 36889888532 44555442 2111
Q ss_pred CCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCC
Q 018322 138 SDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVS 217 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~ 217 (358)
+| ...-+|++.|..+.|+... +.|.+.++|++||+||..+
T Consensus 135 ----------------pp---~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rT-------------------- 174 (334)
T KOG0278|consen 135 ----------------PP---KEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRT-------------------- 174 (334)
T ss_pred ----------------Cc---hhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEecc--------------------
Confidence 11 2244899999999999988 5666779999999999988
Q ss_pred CCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 218 ~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
...+.++. ...+|.++..+++|. + ++-...+.|.+||..+.+.. +.+. -...|++.+++|... +|++|+.
T Consensus 175 -gt~v~sL~-~~s~VtSlEvs~dG~-i-lTia~gssV~Fwdaksf~~l----Ks~k-~P~nV~SASL~P~k~-~fVaGge 244 (334)
T KOG0278|consen 175 -GTEVQSLE-FNSPVTSLEVSQDGR-I-LTIAYGSSVKFWDAKSFGLL----KSYK-MPCNVESASLHPKKE-FFVAGGE 244 (334)
T ss_pred -CcEEEEEe-cCCCCcceeeccCCC-E-EEEecCceeEEeccccccce----eecc-CccccccccccCCCc-eEEecCc
Confidence 45555553 345889999999986 4 45555789999999875432 2221 245688999999986 9999999
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
|..++.||..++.......++|.++|.|+.|+|+| .+.|+||.||+|+||.+.-.+.
T Consensus 245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ceEEEEEeccCCceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecCCCc
Confidence 99999999999754333348999999999999999 8999999999999999876654
No 85
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.85 E-value=1.4e-19 Score=165.85 Aligned_cols=188 Identities=21% Similarity=0.312 Sum_probs=149.1
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccccccc--------CCCCC---------C-----
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVG--------QGAPQ---------V----- 216 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~--------~~~~~---------~----- 216 (358)
...-.|...++-.+|+|.| .++|+|...|+|||||.......++..-.... ....+ .
T Consensus 53 ~iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 53 DIYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 4455799999999999999 79999999999999998763221111100000 00000 0
Q ss_pred ---CCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEE
Q 018322 217 ---SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFA 293 (358)
Q Consensus 217 ---~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~la 293 (358)
..+..+..+.||...+.+++|-|..+-+++||+.|++|.+|+-.- ..-...+..|..-|+|+.|+|+|. .||
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP----FKFk~s~r~HskFV~~VRysPDG~-~Fa 206 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP----FKFKSSFREHSKFVNCVRYSPDGS-RFA 206 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC----eeeeecccccccceeeEEECCCCC-eEE
Confidence 234556677899999999999999998999999999999997432 211356677999999999999998 999
Q ss_pred EEECCCcEEEEECCCCCCeeEEEe---cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 294 SCSVDGHIAIWDTRVGKSALTSFK---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 294 s~s~Dg~I~iwD~r~~~~~~~~~~---~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+.+.||.|.|||-.++ ..+..+. +|.+.|.+|+|+|++ ..|+|++.|.+++|||+.+.+
T Consensus 207 t~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred EecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccc
Confidence 9999999999999986 4566664 899999999999999 999999999999999998753
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=175.41 Aligned_cols=162 Identities=27% Similarity=0.407 Sum_probs=142.5
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
+...+.+|.+.|+++.+.. +..++++|+.|.++++||+.. +.+..++.+|...|.++.
T Consensus 241 i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s---------------------g~C~~~l~gh~stv~~~~ 298 (537)
T KOG0274|consen 241 ILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST---------------------GECTHSLQGHTSSVRCLT 298 (537)
T ss_pred EEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC---------------------CcEEEEecCCCceEEEEE
Confidence 3345999999999999987 447999999999999999876 789999999999999998
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
..+. ++++|+.|.+|++|++.++ ... ..+.+|+.+|+++..+ +. ++++|+.|++|++||++++ +++.++
T Consensus 299 ~~~~---~~~sgs~D~tVkVW~v~n~-~~l---~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~-~cl~sl 367 (537)
T KOG0274|consen 299 IDPF---LLVSGSRDNTVKVWDVTNG-ACL---NLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTG-KCLKSL 367 (537)
T ss_pred ccCc---eEeeccCCceEEEEeccCc-ceE---EEeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhc-eeeeee
Confidence 8663 7889999999999999874 332 5566799999999998 55 9999999999999999974 699999
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.+|...|.++.+... ..+++|+.|++|++||++++
T Consensus 368 ~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 368 SGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred cCCcceEEEEEecCc--ceEEeeeeccceEeecCCch
Confidence 999999999988764 57999999999999999987
No 87
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.85 E-value=2e-21 Score=169.81 Aligned_cols=163 Identities=21% Similarity=0.377 Sum_probs=140.5
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
.+++.|...|..++|+. .+++|++.|.+|.+||+..... ......+.||...|..++|+
T Consensus 271 ~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~------------------it~rrVLvGHrAaVNvVdfd 329 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD------------------ITLRRVLVGHRAAVNVVDFD 329 (499)
T ss_pred hHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH------------------HHHHHHHhhhhhheeeeccc
Confidence 46789999999999986 5899999999999999987321 23445678999999999997
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
.. ++++++.|.+|++|++.+ ...+ +++.+|...|.|+++. ++ ++++|+.|.+||+||+..+ .++..+.+
T Consensus 330 ~k---yIVsASgDRTikvW~~st-~efv---Rtl~gHkRGIAClQYr--~r-lvVSGSSDntIRlwdi~~G-~cLRvLeG 398 (499)
T KOG0281|consen 330 DK---YIVSASGDRTIKVWSTST-CEFV---RTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECG-ACLRVLEG 398 (499)
T ss_pred cc---eEEEecCCceEEEEeccc-eeee---hhhhcccccceehhcc--Ce-EEEecCCCceEEEEecccc-HHHHHHhc
Confidence 53 999999999999999987 4443 7889999999999874 66 9999999999999999986 58888899
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
|..-|.||.|+. ..|++|+.||+|+|||+...-.|
T Consensus 399 HEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 399 HEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred hHHhhhheeecC---ceeeeccccceEEEEecccccCC
Confidence 999999999985 67999999999999999876554
No 88
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=1.2e-19 Score=153.38 Aligned_cols=170 Identities=18% Similarity=0.284 Sum_probs=140.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
....+|.+.|-.+.|.|..+.+||+++.|.+|++||++. .++..........+ -+.|+
T Consensus 58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~---------------------~k~~~~i~~~~eni-~i~ws 115 (313)
T KOG1407|consen 58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS---------------------GKCTARIETKGENI-NITWS 115 (313)
T ss_pred hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc---------------------CcEEEEeeccCcce-EEEEc
Confidence 345589999999999999999999999999999999987 56666655444444 57888
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCC-------------------------------------cccCCCccccCCCcEEE
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDAT-------------------------------------WNVDPNPFIGHSASVED 281 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~-------------------------------------~~~~~~~~~~h~~~V~~ 281 (358)
|.+. +++.|+.|-.|...|.++... ...+...++.|...+.|
T Consensus 116 p~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCic 194 (313)
T KOG1407|consen 116 PDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCIC 194 (313)
T ss_pred CCCC-EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEE
Confidence 8887 888888888888877765310 01123456789999999
Q ss_pred EEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 282 v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|.|+|+|+ +||+|+.|..+.+||+... -|+..+..+.-+|..|+|+.+| ++||+||.|..|-|=++.++.
T Consensus 195 I~f~p~Gr-yfA~GsADAlvSLWD~~EL-iC~R~isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 195 IEFDPDGR-YFATGSADALVSLWDVDEL-ICERCISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred EEECCCCc-eEeeccccceeeccChhHh-hhheeeccccCceEEEEeccCc-ceeeccCccceEEeEecccCC
Confidence 99999999 9999999999999999873 5788888899999999999999 999999999998887777664
No 89
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.2e-20 Score=163.68 Aligned_cols=160 Identities=18% Similarity=0.302 Sum_probs=141.9
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeEEEEeCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPIT 241 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~ 241 (358)
-|..+|.||.|+.+. .++|+|+.||.|++|.+.+ +.++..|. .|+..|+|+.|+.++
T Consensus 261 Mmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~t---------------------G~ClRrFdrAHtkGvt~l~FSrD~ 318 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIET---------------------GQCLRRFDRAHTKGVTCLSFSRDN 318 (508)
T ss_pred ecccceEEEeecccH-HHhhccCcCCcEEEEEEec---------------------chHHHHhhhhhccCeeEEEEccCc
Confidence 478999999999988 7999999999999999987 67887776 799999999999999
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec--C
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA--H 319 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~--h 319 (358)
. .+++++.|.++++.-+.+ ++.. +.|.||++.|+...|.++|. .+++++.||+|++|+..+. .|+.+++. .
T Consensus 319 S-qiLS~sfD~tvRiHGlKS-GK~L---KEfrGHsSyvn~a~ft~dG~-~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~ 391 (508)
T KOG0275|consen 319 S-QILSASFDQTVRIHGLKS-GKCL---KEFRGHSSYVNEATFTDDGH-HIISASSDGTVKVWHGKTT-ECLSTFKPLGT 391 (508)
T ss_pred c-hhhcccccceEEEecccc-chhH---HHhcCccccccceEEcCCCC-eEEEecCCccEEEecCcch-hhhhhccCCCC
Confidence 8 999999999999999987 4443 78999999999999999998 9999999999999999984 57777743 4
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
..+|+++..-|.++..++.|...++|.|.++.
T Consensus 392 d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 392 DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred cccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 55789999988888889999888999998874
No 90
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=7.5e-20 Score=156.70 Aligned_cols=236 Identities=17% Similarity=0.310 Sum_probs=174.7
Q ss_pred hhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCC
Q 018322 60 LHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSD 139 (358)
Q Consensus 60 ~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (358)
+..+...||-.+.+|..-.. ...++++|+.... ..|.|.|+++.
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~--------~~~rla~gS~~Ee-~~Nkvqiv~ld--------------------------- 81 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPD--------KKFRLAVGSFIEE-YNNKVQIVQLD--------------------------- 81 (364)
T ss_pred EEEecCCCceeeeccccCCC--------cceeEEEeeeccc-cCCeeEEEEEc---------------------------
Confidence 45678899999999974311 1379999999875 67999999982
Q ss_pred CCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCC----CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCC
Q 018322 140 SDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQN----PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQ 215 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~ 215 (358)
++. ...+....+.|.-+++.+.|.|+. |.+|||.++ .+|||.+.............
T Consensus 82 ----~~s-------~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L------- 141 (364)
T KOG0290|consen 82 ----EDS-------GELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVL------- 141 (364)
T ss_pred ----cCC-------CceeccCCCCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhh-------
Confidence 000 112223337899999999999976 689998765 79999998632222110000
Q ss_pred CCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEE
Q 018322 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC 295 (358)
Q Consensus 216 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~ 295 (358)
....-..+..++++++|+...++++.+++-|.+..|||+.++.. ......+..|...|.+|+|...+..+||++
T Consensus 142 -----~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASv 215 (364)
T KOG0290|consen 142 -----NNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASV 215 (364)
T ss_pred -----ccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEe
Confidence 00012234569999999999888999999999999999987412 111345778999999999999888899999
Q ss_pred ECCCcEEEEECCCCCCeeEEEec-C-CCCeEEEEEeCCCCcEEEEEeCCC-CEEEEeCCCCCCCC
Q 018322 296 SVDGHIAIWDTRVGKSALTSFKA-H-NADVNVISWNRLASCLLASGSDDG-TFSIHDLRLLKVRL 357 (358)
Q Consensus 296 s~Dg~I~iwD~r~~~~~~~~~~~-h-~~~V~~i~~~p~~~~~lasgs~Dg-~i~iwDlr~~~~~l 357 (358)
+.||+||+||+|........+.. . ..+...++|+++..+++||-..|. .|.|-|+|..-.|+
T Consensus 216 gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 216 GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV 280 (364)
T ss_pred cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce
Confidence 99999999999986544333422 2 467889999999989999977664 79999999887664
No 91
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.1e-19 Score=148.10 Aligned_cols=169 Identities=21% Similarity=0.233 Sum_probs=144.8
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
...+..+..+|-.+|..+..+.++ ..||+|+.|..|.+||+.+ ++.+..|.+|.+.|.
T Consensus 48 rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~T---------------------Gkv~Rr~rgH~aqVN 105 (307)
T KOG0316|consen 48 RGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNT---------------------GKVDRRFRGHLAQVN 105 (307)
T ss_pred ccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEccc---------------------Ceeeeecccccceee
Confidence 556777888999999999999888 6899999999999999998 788899999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
++.|+.... .+++|+.|.++++||.++.... +++.+......|.+|..+. +.+++|+.||++|.||+|.+. .
T Consensus 106 tV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~e--PiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~-l- 177 (307)
T KOG0316|consen 106 TVRFNEESS-VVASGSFDSSVRLWDCRSRSFE--PIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGT-L- 177 (307)
T ss_pred EEEecCcce-EEEeccccceeEEEEcccCCCC--ccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecce-e-
Confidence 999999988 9999999999999999875432 2466667788999998863 279999999999999999864 2
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.......+|++++|++++ +.++.++.|++|++.|-.+++
T Consensus 178 -~sDy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 178 -SSDYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGK 216 (307)
T ss_pred -ehhhcCCcceeEEecCCC-CEEEEeeccceeeecccchhH
Confidence 234456789999999999 788888899999999987764
No 92
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=1.5e-19 Score=155.50 Aligned_cols=121 Identities=21% Similarity=0.428 Sum_probs=100.4
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-...|..|.|+|+...+++.+|-||+||+|++.... ...+ .....|.+++.+++|+.+|.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g------------------~~~~-ka~~~~~~PvL~v~Wsddgs- 85 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG------------------QLVP-KAQQSHDGPVLDVCWSDDGS- 85 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCC------------------cccc-hhhhccCCCeEEEEEccCCc-
Confidence 457899999999766888899999999999998721 0122 33557889999999999997
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC-CEEEEEECCCcEEEEECCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~las~s~Dg~I~iwD~r~~ 309 (358)
.+++|++|+.+++||+.++ + ...+..|.++|..+.|-+... .+|+|||-|++|+.||+|+.
T Consensus 86 kVf~g~~Dk~~k~wDL~S~-Q----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 86 KVFSGGCDKQAKLWDLASG-Q----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred eEEeeccCCceEEEEccCC-C----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence 9999999999999999885 3 256778999999999975432 38999999999999999864
No 93
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=5.5e-19 Score=170.19 Aligned_cols=163 Identities=16% Similarity=0.205 Sum_probs=133.1
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.+.|..|.|+..+ +|.+++.|.+|+||++.. ..++.+| .|.+-|+|++|+
T Consensus 363 ~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~---------------------~~CL~~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGR---------------------KECLKVF-SHNDFVTCVAFN 418 (712)
T ss_pred hhhhccchhheecccccCC--eeEeccccccEEeecCCC---------------------cceeeEE-ecCCeeEEEEec
Confidence 3467999999999999977 899999999999999987 5777777 699999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE--
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-- 316 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-- 316 (358)
|....+|++|+-||.|+||++... + + .....-..-|++++|.|+|+ ..+.|+.+|.+++|+++.. +.....
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~-~-V---v~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~l-k~~~~~~I 491 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDK-K-V---VDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGL-KLVSDFHI 491 (712)
T ss_pred ccCCCcEeecccccceEEeecCcC-e-e---EeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCC-eEEEeeeE
Confidence 998889999999999999999763 2 1 11222347899999999999 9999999999999999873 332222
Q ss_pred ecC------CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 317 KAH------NADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 317 ~~h------~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
..| ...|+.++|.|..+.-|+..+.|..|+|+|+|.
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 111 227999999998766566678899999999954
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.6e-19 Score=154.20 Aligned_cols=166 Identities=19% Similarity=0.304 Sum_probs=147.7
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.+.|.+..|-..+ ..++|++-|.+..+||+.. +.++..+.||..+.+.++-+
T Consensus 266 ~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwDVEt---------------------ge~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 266 MRLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWDVET---------------------GEVVNILTGHDSELTHCSTH 323 (481)
T ss_pred eeeeccccceEehhhhcCc-ceeeeeeccccceeeeecc---------------------CceeccccCcchhccccccC
Confidence 5678999999999999888 7899999999999999998 68888999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|... ++++++.|.+.+|||++. .... ...|+||+..|+++.|..+.+ +++|++|.+|++||+|....++.++.
T Consensus 324 ptQr-LVvTsSrDtTFRLWDFRe-aI~s--V~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIR- 396 (481)
T KOG0300|consen 324 PTQR-LVVTSSRDTTFRLWDFRE-AIQS--VAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIR- 396 (481)
T ss_pred Ccce-EEEEeccCceeEeccchh-hcce--eeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeee-
Confidence 9988 999999999999999985 2222 467999999999999998775 99999999999999999888888886
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+++|.++.+..+ .+||.-.++..|++||+...+
T Consensus 397 tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 397 TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred cCCccceeEeecCC-ceEEeccCCceEEEEecCCCc
Confidence 45679999999888 899999999999999997543
No 95
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=1.9e-19 Score=159.85 Aligned_cols=229 Identities=15% Similarity=0.260 Sum_probs=174.4
Q ss_pred hHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCC
Q 018322 55 TAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVD 134 (358)
Q Consensus 55 ~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~ 134 (358)
..|+-+-.....|-+.=|..-| .|+++-..++++ +...|+=+ +++.+-+
T Consensus 23 ~CYddIrVs~~tWDS~fcavNP-------------kfiAvi~easgG--gaf~ViPl---~k~Gr~d------------- 71 (472)
T KOG0303|consen 23 QCYDDIRVSRVTWDSSFCAVNP-------------KFVAVIIEASGG--GAFLVIPL---VKTGRMD------------- 71 (472)
T ss_pred hhhcceeeeeeeccccccccCC-------------ceEEEEEecCCC--cceeeccc---ccccccC-------------
Confidence 5788888888889886655544 366666666542 23444433 2222111
Q ss_pred CCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCC
Q 018322 135 SESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAP 214 (358)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~ 214 (358)
. .-|. .-+|+++|..+.|+|.+...||+||+|.+|.||.+........
T Consensus 72 ~-----------------~~P~----v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~----------- 119 (472)
T KOG0303|consen 72 A-----------------SYPL----VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD----------- 119 (472)
T ss_pred C-----------------CCCC----ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-----------
Confidence 0 1232 3489999999999999999999999999999999987432221
Q ss_pred CCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEE
Q 018322 215 QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (358)
Q Consensus 215 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (358)
...|+..+.||...|.-++|+|...+.|+|+++|.+|.+|++.++...+ .+. |...|.+++|+.+|. +|++
T Consensus 120 ---ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali----~l~-hpd~i~S~sfn~dGs-~l~T 190 (472)
T KOG0303|consen 120 ---LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI----TLD-HPDMVYSMSFNRDGS-LLCT 190 (472)
T ss_pred ---cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceee----ecC-CCCeEEEEEeccCCc-eeee
Confidence 2478889999999999999999998899999999999999998854432 233 999999999999998 9999
Q ss_pred EECCCcEEEEECCCCCCeeEEEecCCC-CeEEEEEeCCCCcEEEEEe---CCCCEEEEeCCCCCCCC
Q 018322 295 CSVDGHIAIWDTRVGKSALTSFKAHNA-DVNVISWNRLASCLLASGS---DDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 295 ~s~Dg~I~iwD~r~~~~~~~~~~~h~~-~V~~i~~~p~~~~~lasgs---~Dg~i~iwDlr~~~~~l 357 (358)
.+.|+.|||||.|.+ ..+..-.+|.+ .-..+.|-.++ .++.||- .+.++-+||-.++..|+
T Consensus 191 tckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~ 255 (472)
T KOG0303|consen 191 TCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPI 255 (472)
T ss_pred ecccceeEEEcCCCC-cEeeecccccCCCcceeEEeccC-ceeeeccccccccceeccCcccccCcc
Confidence 999999999999995 46655567765 34556788888 5555553 47899999999998875
No 96
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.83 E-value=1.7e-19 Score=152.81 Aligned_cols=185 Identities=16% Similarity=0.281 Sum_probs=145.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc--ccccc-----------ccccc---------------
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN--ALAES-----------ETIVG--------------- 210 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~--~~~~~-----------~~~~~--------------- 210 (358)
-+..+|+|.|+|+...-+. ..++||+.|.+++|||+..... .++.. +....
T Consensus 46 Gty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~ 124 (327)
T KOG0643|consen 46 GTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSV 124 (327)
T ss_pred eeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEE
Confidence 4567999999999999888 7999999999999999987322 11111 10000
Q ss_pred ----CCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC
Q 018322 211 ----QGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP 286 (358)
Q Consensus 211 ----~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 286 (358)
..........|...+..+...++..-|.|.+. .|++|..+|.|..||++++...+ .....|...|++++++|
T Consensus 125 fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v---~s~~~h~~~Ind~q~s~ 200 (327)
T KOG0643|consen 125 FDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELV---DSDEEHSSKINDLQFSR 200 (327)
T ss_pred EEccCChhhhcccCceEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceee---echhhhccccccccccC
Confidence 00011134567888888889999999999999 99999999999999999854433 45566899999999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCC------------------------------------------------------e
Q 018322 287 TEPDVFASCSVDGHIAIWDTRVGKS------------------------------------------------------A 312 (358)
Q Consensus 287 ~~~~~las~s~Dg~I~iwD~r~~~~------------------------------------------------------~ 312 (358)
+.. +|++++.|.+-++||.++..- .
T Consensus 201 d~T-~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEE 279 (327)
T KOG0643|consen 201 DRT-YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEE 279 (327)
T ss_pred Ccc-eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHH
Confidence 998 999999999999999975210 0
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+-.+++|-++||+|+|+|+| ...+||+.||.|++.-.
T Consensus 280 igrvkGHFGPINsvAfhPdG-ksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 280 IGRVKGHFGPINSVAFHPDG-KSYSSGGEDGYVRLHHF 316 (327)
T ss_pred hccccccccCcceeEECCCC-cccccCCCCceEEEEEe
Confidence 12457888999999999999 99999999999998644
No 97
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=4.4e-19 Score=168.55 Aligned_cols=221 Identities=19% Similarity=0.265 Sum_probs=168.2
Q ss_pred HhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCC
Q 018322 58 NSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSES 137 (358)
Q Consensus 58 ~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (358)
.++-++... -.|..-++|.. .|+|+|+ ..+.|.|+++..
T Consensus 405 kciRTi~~~-y~l~~~Fvpgd-----------~~Iv~G~-----k~Gel~vfdlaS------------------------ 443 (888)
T KOG0306|consen 405 KCIRTITCG-YILASKFVPGD-----------RYIVLGT-----KNGELQVFDLAS------------------------ 443 (888)
T ss_pred ceeEEeccc-cEEEEEecCCC-----------ceEEEec-----cCCceEEEEeeh------------------------
Confidence 344444444 33566666653 6999999 456899999851
Q ss_pred CCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCC
Q 018322 138 SDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVS 217 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~ 217 (358)
...+ -+..+|.|.|+.+...|++ ..++|||.|.+|++||+.--.. . ++... +..
T Consensus 444 ----------------~~l~-Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~-~--~gt~~-----k~l 497 (888)
T KOG0306|consen 444 ----------------ASLV-ETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVS-V--PGTQK-----KVL 497 (888)
T ss_pred ----------------hhhh-hhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEec-c--Ccccc-----eee
Confidence 1112 2233899999999999999 7899999999999999865221 0 00000 000
Q ss_pred CCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 218 ~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
......++ .-...|.|+.+||++. +||++--|.++++|-+.+..- ...+.||.-+|.|+..+|++. +++|||.
T Consensus 498 sl~~~rtL-el~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~DSk-livTgSA 570 (888)
T KOG0306|consen 498 SLKHTRTL-ELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPDSK-LIVTGSA 570 (888)
T ss_pred eeccceEE-eccccEEEEEEcCCCc-EEEEEeccCeEEEEEecceee----eeeecccccceeEEeccCCcC-eEEeccC
Confidence 00111112 2345899999999999 999999999999999977332 246789999999999999999 9999999
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|++|+||-+.-+ .|-.++.+|...|.++.|.|.. +++.|+|.|+.|+-||-.++.
T Consensus 571 DKnVKiWGLdFG-DCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 571 DKNVKIWGLDFG-DCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred CCceEEeccccc-hhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhh
Confidence 999999999885 5778899999999999999987 999999999999999987765
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2.8e-19 Score=167.57 Aligned_cols=176 Identities=24% Similarity=0.363 Sum_probs=147.8
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeEEEEeC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWN 238 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s 238 (358)
.+-.|..-|.|+++......++|+||-|+.|.|||++......-.. + ...+...+. |+...||+|+.+
T Consensus 112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s-----~------n~~t~~sl~sG~k~siYSLA~N 180 (735)
T KOG0308|consen 112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS-----F------NNVTVNSLGSGPKDSIYSLAMN 180 (735)
T ss_pred hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh-----c------cccccccCCCCCccceeeeecC
Confidence 3456999999999944444799999999999999999743211000 0 122333344 899999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
+.+. .|++|+..+.|++||.++..+ ...+.||+..|.++..+++|. .++++|.||+|++||++. +.|+.++..
T Consensus 181 ~t~t-~ivsGgtek~lr~wDprt~~k----imkLrGHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgq-QrCl~T~~v 253 (735)
T KOG0308|consen 181 QTGT-IIVSGGTEKDLRLWDPRTCKK----IMKLRGHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQ-QRCLATYIV 253 (735)
T ss_pred Ccce-EEEecCcccceEEeccccccc----eeeeeccccceEEEEEcCCCC-eEeecCCCceEEeeeccc-cceeeeEEe
Confidence 9997 999999999999999998554 256789999999999999998 999999999999999998 569999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|...|+++..+|.- ..+++|+.||.|..=|||+..
T Consensus 254 H~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 254 HKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred ccCceEEEeeCCCc-ceEEecCCCCcEEecccCCch
Confidence 99999999999988 899999999999999999864
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.82 E-value=4.6e-20 Score=168.60 Aligned_cols=173 Identities=17% Similarity=0.219 Sum_probs=136.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE-----cCCCCCeE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-----GGHKDEGY 233 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~ 233 (358)
....+|...++|.+|+|.....|.|++.||+++|||+..... .+.++ .+..-+++
T Consensus 262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~--------------------q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS--------------------QLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh--------------------heeEEeeccCCCcccCce
Confidence 345789999999999999988999999999999999988432 12222 12334789
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCC--cEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA--SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
..+|++++. +||+|+.||.|.+|+........ ....-..|.. .|++|.||++|+ +|++-+.|+++++||+|..++
T Consensus 322 sC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p-~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 322 SCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRP-VMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred eeecCCCcc-hhhhcccCCceeeeecCCccccc-ceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeecccccc
Confidence 999999999 99999999999999985532211 1122345766 899999999999 999999999999999999887
Q ss_pred eeEEEecC--CCCeEEEEEeCCCCcEEEEEeC------CCCEEEEeCCCCCC
Q 018322 312 ALTSFKAH--NADVNVISWNRLASCLLASGSD------DGTFSIHDLRLLKV 355 (358)
Q Consensus 312 ~~~~~~~h--~~~V~~i~~~p~~~~~lasgs~------Dg~i~iwDlr~~~~ 355 (358)
++....+- .-+-+.++|+|+. .+|+||.. -|++.+||.+++..
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred chhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccceee
Confidence 87765432 2244678999999 99999864 57899999887753
No 100
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=3.4e-19 Score=160.92 Aligned_cols=172 Identities=16% Similarity=0.302 Sum_probs=139.8
Q ss_pred ecCCCceeEEEEcCCCC-cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 162 VAHQGCVNRIRAMTQNP-HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
..|.+.|+++.|+|..+ .++|+|..-|+|-+||+..+.. ...-+..+..|..+|.+|.|+|.
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------------d~d~v~~f~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------------DKDGVYLFTPHSGPVSGLKFSPA 245 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------ccCceEEeccCCccccceEecCC
Confidence 35889999999999886 8999999999999999964211 13445678899999999999999
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCC-----------c------------------------------ccCCCccccCCCcE
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDAT-----------W------------------------------NVDPNPFIGHSASV 279 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~-----------~------------------------------~~~~~~~~~h~~~V 279 (358)
+..++++.|.||+|++-|+...-. + ......+.-|...|
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 988999999999999888754210 0 00012233577899
Q ss_pred EEEEECCCCCCEEEEEECCCcEEEEECCCCC--C-eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 280 EDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--S-ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 280 ~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~-~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
..|+++|..+.+|||||.|++++|||+|... . +......|...|++..|+|.+.. |+|.+.|..|+|||..
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 9999999999999999999999999999732 2 44556789999999999999955 8888999999999985
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.6e-19 Score=151.26 Aligned_cols=170 Identities=21% Similarity=0.375 Sum_probs=138.6
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC--
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP-- 239 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-- 239 (358)
..|...|..+...--+ ..|||++.|++|+||.+.... +.+++..+.||.++++.++|..
T Consensus 8 t~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~------------------~s~ll~~L~Gh~GPVwqv~wahPk 68 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNG------------------QSKLLAELTGHSGPVWKVAWAHPK 68 (299)
T ss_pred hhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCC------------------CceeeeEecCCCCCeeEEeecccc
Confidence 3577777777666666 799999999999999998731 1367889999999999999986
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC-CEEEEEECCCcEEEEECCCCC-C-eeEEE
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIWDTRVGK-S-ALTSF 316 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~las~s~Dg~I~iwD~r~~~-~-~~~~~ 316 (358)
.|. +||+++.||.|.||.-.+ +.|.. ...+..|.++|++|+|.|.+- -+||+++.||.|.|.+.+... . .-...
T Consensus 69 ~G~-iLAScsYDgkVIiWke~~-g~w~k-~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~ 145 (299)
T KOG1332|consen 69 FGT-ILASCSYDGKVIIWKEEN-GRWTK-AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV 145 (299)
T ss_pred cCc-EeeEeecCceEEEEecCC-Cchhh-hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence 666 999999999999999866 46653 345778999999999999753 378888999999999998752 2 22334
Q ss_pred ecCCCCeEEEEEeCCC-------------CcEEEEEeCCCCEEEEeCCCC
Q 018322 317 KAHNADVNVISWNRLA-------------SCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~-------------~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.+|.-.||+++|.|.. .+.|+||+.|..|+||+..+.
T Consensus 146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 7899999999999962 145999999999999998774
No 102
>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.
Probab=99.82 E-value=1.3e-21 Score=138.71 Aligned_cols=69 Identities=43% Similarity=0.704 Sum_probs=51.8
Q ss_pred CCcee--eeChhHHHhhhcccccCcceeEEEEeccC-CCccccCCceEEEEEeecCCCCCCceEEEEEeeccC
Q 018322 46 EGEEL--QCDPTAYNSLHAFHIGWPCLSFDIVRDTL-GLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNIS 115 (358)
Q Consensus 46 ~~~~l--~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~-~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~ 115 (358)
|+++| +.+|+||+++|++.++||||||||+|+.. +.+| .||++++|++||||++..+|+|+|++++++.
T Consensus 2 e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~-~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p~ 73 (74)
T PF12265_consen 2 EEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNR-NYPHSQYLLLGTQTSGQEQNYLYVMKVSLPS 73 (74)
T ss_dssp HHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT--SEEEEEEEEE---SS-S-EEEEEEEEEEE-
T ss_pred cceeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCC-CCccEEEEEEEECcCCCCCCEEEEEEEeCCC
Confidence 45677 88999999999999999999999999988 7888 8999999999999999999999999998654
No 103
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=2.2e-19 Score=157.94 Aligned_cols=210 Identities=17% Similarity=0.214 Sum_probs=160.9
Q ss_pred eecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEc
Q 018322 95 GTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAM 174 (358)
Q Consensus 95 GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~ 174 (358)
.|.++++.++.|.||+|+ +.....++.+|.|.|+.|++.
T Consensus 80 s~~aSGs~DG~VkiWnls-----------------------------------------qR~~~~~f~AH~G~V~Gi~v~ 118 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLS-----------------------------------------QRECIRTFKAHEGLVRGICVT 118 (433)
T ss_pred hhhhccccCceEEEEehh-----------------------------------------hhhhhheeecccCceeeEEec
Confidence 355566688899999985 334446778999999999998
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCccc-c---------ccc---cccccCC----CCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 175 TQNPHICASWADTGHVQVWDLRSHLNA-L---------AES---ETIVGQG----APQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 175 p~~~~~lat~s~dg~V~iwd~~~~~~~-~---------~~~---~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
. ..++|+++|.+|+.|-+...... + +.. ......+ .-......|+..+.--.+.+.++.|
T Consensus 119 ~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 119 Q---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred c---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEec
Confidence 7 36788999999999986552110 0 000 0000000 0011345677788777788999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
+|.....|++|..|+.|.|||++...... .+ .-+..-+.|+|+| +...|++++.|..++.||+|....++....
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~----KV-i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~ 269 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLK----KV-ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHK 269 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccc----ee-eeeccccceecCc-cccceeeccccccceehhhhhhcccchhhc
Confidence 99998899999999999999999843321 11 1234567799999 666999999999999999999888998899
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.|.+.|..+.|+|.| .-+++||.|.+|+||..+....
T Consensus 270 dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred ccceeEEEeccCCCc-chhccccccceEEEeecCCCcc
Confidence 999999999999999 8999999999999999887653
No 104
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.1e-20 Score=182.30 Aligned_cols=174 Identities=21% Similarity=0.308 Sum_probs=143.0
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE-EcCCCCCeEEEEe
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-FGGHKDEGYAIDW 237 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~ 237 (358)
.+...|.|.|..+.|++..++++|+|+.+|.|.|||+.+.. .|..- -..-..+|.+|+|
T Consensus 110 a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~--------------------tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 110 ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE--------------------TPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC--------------------CCCCCCCCCCcccceEecc
Confidence 56667999999999999998899999999999999999832 22111 1123468999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC---cEEEEECCCCCCeeE
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG---HIAIWDTRVGKSALT 314 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg---~I~iwD~r~~~~~~~ 314 (358)
+......|++|+.+|++.|||++.. +.++ .....+....+..|+|+|++.+.+++++.|. .|.+||+|....++.
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~-~pii-~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKK-KPII-KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCC-Cccc-ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence 9887779999999999999999884 3231 1122222356889999999988888888764 799999999778888
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+..|...|.++.|++.++.+|+|++.|+.|.+|+..+++
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 8999999999999999998999999999999999998854
No 105
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=3.4e-19 Score=152.95 Aligned_cols=179 Identities=22% Similarity=0.321 Sum_probs=139.5
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.|.|.||.+.+.+...+++.+|+.||.|.+||+......- .... ..... -......-.+|+-.|.++.|-|...
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e-~s~l-i~k~~----c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYE-ASGL-IAKHK----CIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchh-hccc-eehee----eeccccCCccceeeeeeeEEeeecC
Confidence 6999999999999877999999999999999998732110 0000 00000 0001112346888999999999999
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC--CCEEEEEECCCcEEEEECCCCCCeeEEEecCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
|.|.+++.|.++++||.++.+... .|. -.+.|.+-+|+|-. ..++|+|..+-.|++.|+.++ ...+++.+|.
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~----~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr 188 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAV----DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHR 188 (397)
T ss_pred ceeecccccceEEEeecccceeeE----Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeecccc
Confidence 999999999999999998743321 121 34567788888843 248888999999999999996 5888999999
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
..|.++.|+|..+..|+||+.||.|++||+|.-
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra 221 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA 221 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecc
Confidence 999999999999899999999999999999864
No 106
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.81 E-value=4e-18 Score=150.17 Aligned_cols=168 Identities=18% Similarity=0.300 Sum_probs=143.2
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
....+.+|...|.++.|+.++ .+||||..+|.|+||...+ ......+..-...+.-|.
T Consensus 98 ~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~st---------------------g~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVST---------------------GGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred ceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEccc---------------------CceEEEeecccCceEEEE
Confidence 346788999999999999999 8999999999999999987 344455555566888999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
|+|.+. .|+.|+.||.+.+|.+.+.+. .+.+.||+.++++-.|.|+|. .++++..||+|++|++.++ ++++.+
T Consensus 156 WHp~a~-illAG~~DGsvWmw~ip~~~~----~kv~~Gh~~~ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg-~p~~~~ 228 (399)
T KOG0296|consen 156 WHPRAH-ILLAGSTDGSVWMWQIPSQAL----CKVMSGHNSPCTCGEFIPDGK-RILTGYDDGTIIVWNPKTG-QPLHKI 228 (399)
T ss_pred eccccc-EEEeecCCCcEEEEECCCcce----eeEecCCCCCcccccccCCCc-eEEEEecCceEEEEecCCC-ceeEEe
Confidence 999988 999999999999999987432 367899999999999999999 9999999999999999996 577776
Q ss_pred e-cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 317 K-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 317 ~-~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
. +......++.++..+ ..+++|+.++.+++-...+++
T Consensus 229 ~~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 229 TQAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred cccccCcCCcccccccc-ceeEeccCCccEEEEccccce
Confidence 4 334567888999888 899999999999887766654
No 107
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=168.71 Aligned_cols=166 Identities=22% Similarity=0.348 Sum_probs=143.8
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
.......+.+|...|.++...+ .++++|+.|.+|++|++.+ ...+..+.+|..+|.
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n---------------------~~~l~l~~~h~~~V~ 335 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTN---------------------GACLNLLRGHTGPVN 335 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccC---------------------cceEEEeccccccEE
Confidence 4456677889999999998876 5788899999999999997 677888888999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
++..+ +. ++++|+.||+|.+|++.+ .+.. ..+.+|+..|.++.+... . .+++|+.|++|++||++....++
T Consensus 336 ~v~~~--~~-~lvsgs~d~~v~VW~~~~-~~cl---~sl~gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~ 406 (537)
T KOG0274|consen 336 CVQLD--EP-LLVSGSYDGTVKVWDPRT-GKCL---KSLSGHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCI 406 (537)
T ss_pred EEEec--CC-EEEEEecCceEEEEEhhh-ceee---eeecCCcceEEEEEecCc-c-eEEeeeeccceEeecCCchhhhh
Confidence 99998 44 999999999999999986 4443 788999999999988765 3 89999999999999999853689
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.++..|.+-|+.+.+.. .+|++++.||+|++||...++.
T Consensus 407 ~tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 407 HTLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred hhhcCCccccccccccc---ceeEeccccccEEEeecccCce
Confidence 99999999997777653 7899999999999999987653
No 108
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.81 E-value=4.9e-19 Score=174.60 Aligned_cols=179 Identities=22% Similarity=0.411 Sum_probs=148.4
Q ss_pred EEecCC-CceeEEEEcCCCCcEEEEEe--CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 160 RKVAHQ-GCVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 160 ~~~~H~-~~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
....|. ..|..|..+|++ ..+|||+ .||.++||+...-.......... -...+.....|.+.|.|+.
T Consensus 7 ~wv~H~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~---------l~k~l~~m~~h~~sv~CVR 76 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNEN---------LPKHLCTMDDHDGSVNCVR 76 (942)
T ss_pred cccccCCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcc---------cchhheeeccccCceeEEE
Confidence 344554 578999999999 7999999 89999999987643222211110 1466778889999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCC-CCC--------------cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPAS-DAT--------------WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~-~~~--------------~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (358)
|+|+|. +||+|+.|+.|.+|.... +.. |. ....+.+|.+.|.+++|+|++. +||+++.|++|
T Consensus 77 ~S~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk-~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsV 153 (942)
T KOG0973|consen 77 FSPDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWK-VVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSV 153 (942)
T ss_pred ECCCCC-eEeeccCcceEEEeeecccCCcccccccccccccceee-EEEEEecCCCccceeccCCCcc-EEEEecccceE
Confidence 999999 999999999999999863 100 11 1245778999999999999998 99999999999
Q ss_pred EEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 302 AIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.||+.++. ..+..+.+|.+.|-.+.|.|-| .+|||-++|++|+||.+..+
T Consensus 154 iiwn~~tF-~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw 203 (942)
T KOG0973|consen 154 IIWNAKTF-ELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDW 203 (942)
T ss_pred EEEccccc-eeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccc
Confidence 99999996 7888899999999999999999 99999999999999997653
No 109
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=6.2e-18 Score=146.45 Aligned_cols=128 Identities=22% Similarity=0.388 Sum_probs=109.0
Q ss_pred CCeEE--EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCC
Q 018322 154 TPILQ--LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE 231 (358)
Q Consensus 154 ~~~~~--~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 231 (358)
+|.+. +...+|.+.|++++++- .++|+||.|-+|+|||+.. ...+..+..|.+.
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k---------------------~~qlg~ll~Hags 85 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVSG---PYVASGSSDETIHIYDMRK---------------------RKQLGILLSHAGS 85 (362)
T ss_pred ceeeeccccccccccceeEEEecc---eeEeccCCCCcEEEEeccc---------------------hhhhcceeccccc
Confidence 55443 56778999999999874 6999999999999999998 4566778889999
Q ss_pred eEEEEeCCCC-CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 232 GYAIDWNPIT-TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 232 v~~l~~s~~~-~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
|++|.|.+.. .+.|++|+.||.|.+|+... | .....+.+|+..|++|+.+|.+. +-++.+.|+.+++|++-.++
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~---W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---W-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCC---e-EEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCc
Confidence 9999998764 23799999999999999844 4 23578899999999999999999 99999999999999987654
No 110
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.5e-18 Score=156.30 Aligned_cols=174 Identities=22% Similarity=0.362 Sum_probs=132.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCC-CCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 018322 178 PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQV-SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYL 256 (358)
Q Consensus 178 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~l 256 (358)
++++|.|+.+..|.|||+.-.......... ......+. ..++.-..-.+|++.|.+|.|+....+.|||||.|.+|.+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~L-Gs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTL-GSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceee-chhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 579999999999999999763222111110 00000000 0111222345799999999999998889999999999999
Q ss_pred EecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEE
Q 018322 257 WEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLL 336 (358)
Q Consensus 257 wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~l 336 (358)
||+.++ ++. ..+..|+..|.+++|+|..+.++++|+.|++|++.|+|.....-..+ ...+.|-.++|+|..+..+
T Consensus 271 WD~~~g-~p~---~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f 345 (463)
T KOG0270|consen 271 WDVDTG-KPK---SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSF 345 (463)
T ss_pred EEcCCC-Ccc---eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeE
Confidence 999884 433 56677999999999999999999999999999999999643222222 3456799999999998899
Q ss_pred EEEeCCCCEEEEeCCCCCCCC
Q 018322 337 ASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 337 asgs~Dg~i~iwDlr~~~~~l 357 (358)
+++.+||+|+-+|+|+...++
T Consensus 346 ~~~tddG~v~~~D~R~~~~~v 366 (463)
T KOG0270|consen 346 FVSTDDGTVYYFDIRNPGKPV 366 (463)
T ss_pred EEecCCceEEeeecCCCCCce
Confidence 999999999999999987664
No 111
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.7e-17 Score=142.67 Aligned_cols=173 Identities=18% Similarity=0.167 Sum_probs=134.4
Q ss_pred CeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
......+.+|...|++|+.+|-+ ..+++++.|++|++||++. .++...+.....+ .
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~---------------------~~cqg~l~~~~~p--i 145 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRV---------------------KKCQGLLNLSGRP--I 145 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecC---------------------CCCceEEecCCCc--c
Confidence 34556788999999999999998 7999999999999999996 2343333322223 5
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccc-cCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
.+|.|.|- ++|+|.....|+|||+|..++-......+. +-....+.|.|||+|. .++.+...+.+++.|.-.+ ...
T Consensus 146 ~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~G-~~~ 222 (311)
T KOG1446|consen 146 AAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFDG-TVK 222 (311)
T ss_pred eeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccCC-cEe
Confidence 78999998 888888777999999998543221111122 3467899999999999 8888888999999999886 466
Q ss_pred EEEecCCCCe---EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 314 TSFKAHNADV---NVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 314 ~~~~~h~~~V---~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.++..+...- -...|.|++ .++++|+.||+|++|+++++.+
T Consensus 223 ~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 223 STFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred eeEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcE
Confidence 6665554322 467899999 9999999999999999988764
No 112
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=8.7e-20 Score=172.70 Aligned_cols=165 Identities=23% Similarity=0.411 Sum_probs=147.5
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.+..|...|+|++.-..+ ..+++|+.+-.+.||.+.. ..++..|.+|..+|.+|.|++
T Consensus 23 ~~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~k---------------------p~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGK---------------------PNAITSLTGHESPIESLTFDT 80 (825)
T ss_pred hhhhhhhhhceeeeeccc-eeeccCCCceeeccccccC---------------------CchhheeeccCCcceeeecCc
Confidence 345689999999985555 7999999999999999987 455667899999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
... +|++|+.+|+|++||+... +. .+++.+|...+.+|.|+|.+. ++|+|+.|+.+++||+|. ..|...+..|
T Consensus 81 ~E~-LlaagsasgtiK~wDleeA-k~---vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~ 153 (825)
T KOG0267|consen 81 SER-LLAAGSASGTIKVWDLEEA-KI---VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRK-KGCSHTYKSH 153 (825)
T ss_pred chh-hhcccccCCceeeeehhhh-hh---hhhhhccccCcceeeeccceE-Eeccccccccceehhhhc-cCceeeecCC
Confidence 987 9999999999999999763 32 378999999999999999998 889999999999999997 3588999999
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
...|+++.|+|+| .++++|++|.+++|||++.++
T Consensus 154 ~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk 187 (825)
T KOG0267|consen 154 TRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGK 187 (825)
T ss_pred cceeEEEeecCCC-ceeeccCCcceeeeecccccc
Confidence 9999999999999 999999999999999997664
No 113
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=1.2e-18 Score=149.34 Aligned_cols=171 Identities=20% Similarity=0.337 Sum_probs=134.8
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.|-|.|+||.|.|++ ..+|+-. +..|.+|++........ .-+...-.+|....++-+|+|...
T Consensus 121 eavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~va---------------ev~ss~s~e~~~~ftsg~WspHHd 183 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVA---------------EVLSSESAEMRHSFTSGAWSPHHD 183 (370)
T ss_pred HHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchhe---------------eecccccccccceecccccCCCCc
Confidence 356899999999987 5566544 78999999987322110 001111123566788899999655
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
+..+....|+++..||+|+..... ..-..|...|.++.|+|+-+++|++|++||.|+|||+|..+.++..+..|...
T Consensus 184 gnqv~tt~d~tl~~~D~RT~~~~~---sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW 260 (370)
T KOG1007|consen 184 GNQVATTSDSTLQFWDLRTMKKNN---SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW 260 (370)
T ss_pred cceEEEeCCCcEEEEEccchhhhc---chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence 544444559999999999854432 33456889999999999999999999999999999999988899999999999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
|.++.|+|....+|+|||.|..|.+|...+-
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred EEEEEecCccceEEEecCCCceeEEEecccc
Confidence 9999999998899999999999999987654
No 114
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=3.5e-19 Score=156.64 Aligned_cols=162 Identities=24% Similarity=0.302 Sum_probs=132.8
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-...|.+++|+|..+.+||+|+.|+.|.|||++. ..|+..+.- .-.-..|+|+|.+-
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~---------------------~~Pl~KVi~-~mRTN~IswnPeaf- 242 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQ---------------------ASPLKKVIL-TMRTNTICWNPEAF- 242 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEeccc---------------------CCccceeee-eccccceecCcccc-
Confidence 3578999999999999999999999999999987 455554322 22445899999655
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.|++|+.|..++.+|++...... ..+.+|.+.|.+|.|||.|. -|++||.|.+||||..+.+...-.-...--..|
T Consensus 243 nF~~a~ED~nlY~~DmR~l~~p~---~v~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V 318 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNLSRPL---NVHKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHV 318 (433)
T ss_pred ceeeccccccceehhhhhhcccc---hhhcccceeEEEeccCCCcc-hhccccccceEEEeecCCCcchhhhhHhhhhee
Confidence 89999999999999998865543 77889999999999999999 999999999999999987543211112234569
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.|+.|+-+. .++++||+|+.|++|-....
T Consensus 319 ~~Vk~S~Ds-kyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 319 FCVKYSMDS-KYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred eEEEEeccc-cEEEecCCCcceeeeecchh
Confidence 999999999 99999999999999987543
No 115
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=5.4e-18 Score=154.53 Aligned_cols=173 Identities=17% Similarity=0.260 Sum_probs=141.7
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC-CCCeEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-KDEGYAI 235 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l 235 (358)
+...+..|+..|+++.++-.. .+||+++.-|.|.|..+... .....|... ...+.-|
T Consensus 113 ~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~---------------------~~tt~f~~~sgqsvRll 170 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTK---------------------QKTTTFTIDSGQSVRLL 170 (673)
T ss_pred HhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccC---------------------ccccceecCCCCeEEEe
Confidence 335567899999999999877 79999999999999998872 222233322 3466789
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
.+++....+|.+++.+|.|.|||+....... .....|..+...|+|+|...-+|++.+.|..|.+||+++. .....
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~---~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~ 246 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIF---HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDR 246 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccCCCccc---chhhhccCCcCcceecCCccceEEEecccceEEEeecccc-cccce
Confidence 9999988788999999999999997643322 4456699999999999999889999999999999999973 33333
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
+ ....+...++|.++| .+|+.|...|.|..||+|..+.|+
T Consensus 247 l-~y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 247 L-TYSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred e-eecCCcceeeecCCc-eEEEeecCCceEEEEecccCCCCc
Confidence 3 345678999999999 999999999999999999999886
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.78 E-value=5.6e-18 Score=159.94 Aligned_cols=156 Identities=26% Similarity=0.353 Sum_probs=136.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|...|.++....++ .+++||-|.++++|-... ....+.+|+..|+++..-
T Consensus 95 ~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~-----------------------l~~~l~gH~asVWAv~~l 149 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGE-----------------------LVYSLQGHTASVWAVASL 149 (745)
T ss_pred hhhhccccceeeeecCCcC--ceEecccccceEEecchh-----------------------hhcccCCcchheeeeeec
Confidence 4677999999999998887 389999999999998765 344588999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|.+ .++||+.|.+|++|.-. .. .+.|.+|+..|..+++-+.+. |+||+.||.|++|++.. .++....+
T Consensus 150 ~e~--~~vTgsaDKtIklWk~~---~~---l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~g--e~l~~~~g 217 (745)
T KOG0301|consen 150 PEN--TYVTGSADKTIKLWKGG---TL---LKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG--EVLLEMHG 217 (745)
T ss_pred CCC--cEEeccCcceeeeccCC---ch---hhhhccchhheeeeEEecCCC--eEeecCCceEEEEeccC--ceeeeeec
Confidence 987 79999999999999763 22 478999999999999999875 99999999999999943 58889999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
|.+-|.+++...++ .+++|++.|++++||+...
T Consensus 218 htn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 218 HTNFVYSISMALSD-GLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred cceEEEEEEecCCC-CeEEEecCCceEEEeecCc
Confidence 99999999966666 7999999999999998753
No 117
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.1e-17 Score=134.90 Aligned_cols=186 Identities=20% Similarity=0.300 Sum_probs=133.1
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc---EEEcCCCC
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL---VKFGGHKD 230 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~ 230 (358)
+.+.-+....-...|..+.|.|.| .+.|.|+...+.+|................ ...|. ..-+.|.+
T Consensus 21 ~~f~~i~~l~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~---------~~pp~v~~kr~khhkg 90 (350)
T KOG0641|consen 21 KHFEAINILEDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAA---------KQPPSVLCKRNKHHKG 90 (350)
T ss_pred cceEEEEEecchhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccc---------cCCCeEEeeeccccCc
Confidence 334446666778999999999999 799999999999998765522111111000 11112 22356889
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc---------------------------------------------
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW--------------------------------------------- 265 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~--------------------------------------------- 265 (358)
.|+|.+|+|.|. +|++|++|++|++.-++.....
T Consensus 91 siyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td 169 (350)
T KOG0641|consen 91 SIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD 169 (350)
T ss_pred cEEEEEecCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee
Confidence 999999999999 9999999999998766542100
Q ss_pred ---ccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe--cC-----CCCeEEEEEeCCCCcE
Q 018322 266 ---NVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--AH-----NADVNVISWNRLASCL 335 (358)
Q Consensus 266 ---~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--~h-----~~~V~~i~~~p~~~~~ 335 (358)
-.....+.+|++-|.++ ++-++. +|++|+.|.+||+||+|-+ .++.++. .| .+.|.+++..|.| ++
T Consensus 170 c~~g~~~~a~sghtghilal-yswn~~-m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsg-rl 245 (350)
T KOG0641|consen 170 CGRGQGFHALSGHTGHILAL-YSWNGA-MFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSG-RL 245 (350)
T ss_pred cCCCCcceeecCCcccEEEE-EEecCc-EEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCc-ce
Confidence 00112344666666655 222344 8999999999999999984 5666652 23 3579999999999 99
Q ss_pred EEEEeCCCCEEEEeCCCCC
Q 018322 336 LASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 336 lasgs~Dg~i~iwDlr~~~ 354 (358)
|++|-.|....+||+|.++
T Consensus 246 l~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRGGR 264 (350)
T ss_pred eeeccCCCceEEEEeeCCc
Confidence 9999999999999999764
No 118
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=5.8e-18 Score=153.09 Aligned_cols=162 Identities=17% Similarity=0.301 Sum_probs=140.7
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
..|...|.++++++++ .+||||+.|..|.||+..+ ..++..+.+|.+.|.+|+|-...
T Consensus 199 ~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t---------------------~ehv~~~~ghr~~V~~L~fr~gt 256 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDT---------------------LEHVKVFKGHRGAVSSLAFRKGT 256 (479)
T ss_pred ccccceeEEEEEcCCC-cEEEecCCCceEEEecCcc---------------------cchhhcccccccceeeeeeecCc
Confidence 4899999999999999 8999999999999999998 68888899999999999998766
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
. .|++++.|++|++|++..... ..++.+|.+.|.+|.-..-++ ++-.|+.|+++++|++.. .....+.+|.+
T Consensus 257 ~-~lys~s~Drsvkvw~~~~~s~----vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e--esqlifrg~~~ 328 (479)
T KOG0299|consen 257 S-ELYSASADRSVKVWSIDQLSY----VETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE--ESQLIFRGGEG 328 (479)
T ss_pred c-ceeeeecCCceEEEehhHhHH----HHHHhCCccceeeechhcccc-eEEeccccceeEEEeccc--cceeeeeCCCC
Confidence 5 999999999999999976332 367889999999998887777 666677999999999955 34456788998
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+-|++|-.+. .++|||++|.|.+|++-+.++
T Consensus 329 sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 329 SIDCVAFINDE--HFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred CeeeEEEeccc--ceeeccCCceEEEeeecccCc
Confidence 99999997654 799999999999999977653
No 119
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.77 E-value=4.7e-17 Score=146.31 Aligned_cols=162 Identities=20% Similarity=0.286 Sum_probs=133.0
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC--CCCCeEEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG--HKDEGYAID 236 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~ 236 (358)
.....|.++|+.+..+|.+ .+|.+++.||+....|+.. ...+..... ..-++++++
T Consensus 297 ~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~---------------------g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISS---------------------GSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred cccccccccceeeeeccCC-cEEEEecCCceEEEEEccC---------------------CcEEEEEeeccccceeEEee
Confidence 3456899999999999999 7888999999999999987 333333322 223689999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
|+|+|. +|.+|..||.|++||+.++.. ...|.+|+++|..|+|+.+|- ++|+++.|+.|++||+|... ...++
T Consensus 355 fHpDgL-ifgtgt~d~~vkiwdlks~~~----~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl~-n~kt~ 427 (506)
T KOG0289|consen 355 FHPDGL-IFGTGTPDGVVKIWDLKSQTN----VAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRKLK-NFKTI 427 (506)
T ss_pred EcCCce-EEeccCCCceEEEEEcCCccc----cccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehhhc-cccee
Confidence 999998 999999999999999987542 368999999999999999987 99999999999999999853 34444
Q ss_pred e-cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 317 K-AHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 317 ~-~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
. .....|+++.|.+.| .+|+.++.|=+|++++-
T Consensus 428 ~l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKK 461 (506)
T ss_pred eccccccceeEEEcCCC-CeEEeecceeEEEEEec
Confidence 2 233479999999999 88888888877777763
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=2.2e-17 Score=149.35 Aligned_cols=164 Identities=23% Similarity=0.250 Sum_probs=135.9
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.+.+|.+.|.+++|-... .-+.+++.|++|++|++.. ...+.++.||.+.|.+|+-..
T Consensus 239 ~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~---------------------~s~vetlyGHqd~v~~IdaL~ 296 (479)
T KOG0299|consen 239 VFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQ---------------------LSYVETLYGHQDGVLGIDALS 296 (479)
T ss_pred cccccccceeeeeeecCc-cceeeeecCCceEEEehhH---------------------hHHHHHHhCCccceeeechhc
Confidence 367899999999998755 6788889999999999987 456677889999999999887
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-ec
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KA 318 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~ 318 (358)
.+. .+-+|+.|++++||++....+ ..|.+|.+.+.|++|-.+. .|++||.+|.|.+|++-.. +++.+. .+
T Consensus 297 reR-~vtVGgrDrT~rlwKi~eesq-----lifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KK-kplf~~~~A 367 (479)
T KOG0299|consen 297 RER-CVTVGGRDRTVRLWKIPEESQ-----LIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKK-KPLFTSRLA 367 (479)
T ss_pred ccc-eEEeccccceeEEEeccccce-----eeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeeccc-CceeEeecc
Confidence 776 666677999999999965433 4588899999999998765 6999999999999999874 455543 34
Q ss_pred CC-----------CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 319 HN-----------ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 319 h~-----------~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
|. .+|++|+..|.. .++|+|+.+|.|++|-+..+-+
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCcc
Confidence 42 379999999988 9999999999999999876633
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=6.2e-17 Score=157.21 Aligned_cols=163 Identities=14% Similarity=0.232 Sum_probs=132.2
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
.+-++++++|+.+| .++|.||+|-.|++-++.. .....++.+|.++|.+|.++|.+.
T Consensus 95 ftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D---------------------~s~~~~lrgh~apVl~l~~~p~~~- 151 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDD---------------------SSQEKVLRGHDAPVLQLSYDPKGN- 151 (933)
T ss_pred eeccceEEEEecCC-cEEEeecCceeEEEEeccc---------------------cchheeecccCCceeeeeEcCCCC-
Confidence 35678999999999 7999999999999999887 456678999999999999999998
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCC---Ccccc-CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE--e
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDP---NPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--K 317 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~---~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--~ 317 (358)
+||+.++||.|++|++.++....... ..... ....+..++|+|++. .|+..+.|+.|++|+.... .....+ .
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~w-e~~f~Lr~~ 229 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGW-ELQFKLRDK 229 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCc-eeheeeccc
Confidence 99999999999999998742211000 01111 246678899999988 7888889999999998763 344444 4
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+.+.+++++|+|+| .+||+++.||.|.|||..+
T Consensus 230 ~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 230 LSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccccceEEEEEcCCC-cEEeeeccCCcEEEEeccc
Confidence 455569999999999 9999999999999999984
No 122
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.7e-16 Score=137.33 Aligned_cols=221 Identities=19% Similarity=0.220 Sum_probs=166.4
Q ss_pred CCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCC
Q 018322 46 EGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNK 125 (358)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~ 125 (358)
+++-..||-..-++.-.+..+-|-|.+.+.++. .++.|+ -+++|.++++. .
T Consensus 34 DgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~------------~~~~G~-----~dg~vr~~Dln-~----------- 84 (323)
T KOG1036|consen 34 DGSLRLYDVPANSLKLKFKHGAPLLDCAFADES------------TIVTGG-----LDGQVRRYDLN-T----------- 84 (323)
T ss_pred cCcEEEEeccchhhhhheecCCceeeeeccCCc------------eEEEec-----cCceEEEEEec-C-----------
Confidence 677777887777999999999999999998863 556666 56799999883 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 018322 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAES 205 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~ 205 (358)
.+ ....-.|..+|.||.+++.. ..+++||-|++|++||.+.
T Consensus 85 ----------------------------~~--~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~-------- 125 (323)
T KOG1036|consen 85 ----------------------------GN--EDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRN-------- 125 (323)
T ss_pred ----------------------------Cc--ceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccc--------
Confidence 00 12345799999999999876 6899999999999999986
Q ss_pred cccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEEC
Q 018322 206 ETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS 285 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s 285 (358)
..+...+. ....|++++.+. . .|++|..+..|.+||+++..... ...-..-+-.+.+|++-
T Consensus 126 -------------~~~~~~~d-~~kkVy~~~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~ 186 (323)
T KOG1036|consen 126 -------------KVVVGTFD-QGKKVYCMDVSG--N-RLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALV 186 (323)
T ss_pred -------------cccccccc-cCceEEEEeccC--C-EEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEe
Confidence 12222332 223888887754 3 89999999999999999854422 11122345678999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCC---CeeEEEecCCC---------CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 286 PTEPDVFASCSVDGHIAIWDTRVGK---SALTSFKAHNA---------DVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~---~~~~~~~~h~~---------~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
|++. -++.++-||.|.+=.+.... ..-..++.|.. +||+|+|+|-. ..||||+.||.|.+||+.+.
T Consensus 187 pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 187 PNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred cCCC-ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcch
Confidence 9777 78999999999886665421 12334566643 69999999987 89999999999999999876
Q ss_pred CC
Q 018322 354 KV 355 (358)
Q Consensus 354 ~~ 355 (358)
++
T Consensus 265 Kr 266 (323)
T KOG1036|consen 265 KR 266 (323)
T ss_pred hh
Confidence 54
No 123
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.4e-16 Score=138.36 Aligned_cols=160 Identities=16% Similarity=0.247 Sum_probs=132.7
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-.+.|+++.|+++| .++++++.|-+++|||... ++.+.++..++-.+..++|.....
T Consensus 13 ~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~---------------------g~~~~ti~skkyG~~~~~Fth~~~- 69 (311)
T KOG1446|consen 13 TNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLS---------------------GKQVKTINSKKYGVDLACFTHHSN- 69 (311)
T ss_pred CCCceeEEEecCCC-CEEEEecCCCeEEEEEcCC---------------------CceeeEeecccccccEEEEecCCc-
Confidence 46899999999999 6788889999999999987 577777777777888888887776
Q ss_pred eEEEEeC--CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 244 RLVTGDC--NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 244 ~l~sgs~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
.++.++. |.+|+..++.+ .+.+ +.|.||+..|++|+.+|-+. .|+|++.|++||+||+|.. .+...+...
T Consensus 70 ~~i~sStk~d~tIryLsl~d-Nkyl---RYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~-~cqg~l~~~-- 141 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHD-NKYL---RYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVK-KCQGLLNLS-- 141 (311)
T ss_pred eEEEccCCCCCceEEEEeec-CceE---EEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCC-CCceEEecC--
Confidence 6666665 88999999977 4443 78999999999999999997 9999999999999999974 444444333
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.-..++|.|.| -++|++...+.|+|||+|+...
T Consensus 142 ~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 142 GRPIAAFDPEG-LIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred CCcceeECCCC-cEEEEecCCCeEEEEEecccCC
Confidence 33457999999 8888888877999999999854
No 124
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.75 E-value=7.2e-18 Score=150.63 Aligned_cols=215 Identities=20% Similarity=0.270 Sum_probs=152.4
Q ss_pred HHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCC
Q 018322 56 AYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDS 135 (358)
Q Consensus 56 ~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (358)
+-..++.+ +|-+-.+.|+++. -.|..| +.+-.|.+|++.. .
T Consensus 167 ~~~~ld~h--~gev~~v~~l~~s-----------dtlatg-----g~Dr~Ik~W~v~~-~-------------------- 207 (459)
T KOG0288|consen 167 ALFVLDAH--EGEVHDVEFLRNS-----------DTLATG-----GSDRIIKLWNVLG-E-------------------- 207 (459)
T ss_pred hhhhhhcc--ccccceeEEccCc-----------chhhhc-----chhhhhhhhhccc-c--------------------
Confidence 44455544 7999999999873 233333 3455788888730 0
Q ss_pred CCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCC
Q 018322 136 ESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQ 215 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~ 215 (358)
+--+...+.+-.|.|+++.|.+++ ..+++.+.|+.+++|++..
T Consensus 208 ------------------k~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~------------------ 250 (459)
T KOG0288|consen 208 ------------------KSELISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDS------------------ 250 (459)
T ss_pred ------------------hhhhhhhhhccCCCcceeeecCCC-ceEEeecCCCceeeeeccc------------------
Confidence 112334566778999999999999 5677779999999999987
Q ss_pred CCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccC--------------CCccccC------
Q 018322 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD--------------PNPFIGH------ 275 (358)
Q Consensus 216 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~--------------~~~~~~h------ 275 (358)
.+...++.||++.|+++.|..... .+++|+.|.+|++||+... .+... ...+.+|
T Consensus 251 ---~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~-~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 251 ---LRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKA-YCSKTVLPGSQCNDIVCSISDVISGHFDKKVR 325 (459)
T ss_pred ---hhhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhh-heeccccccccccceEecceeeeecccccceE
Confidence 577788999999999999988776 6899999999999998762 11100 0001111
Q ss_pred ---------------CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec----CCCCeEEEEEeCCCCcEE
Q 018322 276 ---------------SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA----HNADVNVISWNRLASCLL 336 (358)
Q Consensus 276 ---------------~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~----h~~~V~~i~~~p~~~~~l 336 (358)
.+.|+++..++++. -+.+++.|.++.+.|+|+. .....+.+ ..++.+.+.|+|++ .|+
T Consensus 326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~-~Yv 402 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGGRVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDG-SYV 402 (459)
T ss_pred EEeccCCceeeEeecCcceeeEeeccCCe-EEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCCC-cee
Confidence 23566666666666 5556677777777777763 33344432 23458999999999 999
Q ss_pred EEEeCCCCEEEEeCCCCC
Q 018322 337 ASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 337 asgs~Dg~i~iwDlr~~~ 354 (358)
|+||.||.|+||++.+++
T Consensus 403 aAGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 403 AAGSADGSVYIWSVFTGK 420 (459)
T ss_pred eeccCCCcEEEEEccCce
Confidence 999999999999998765
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=1.5e-17 Score=151.86 Aligned_cols=172 Identities=23% Similarity=0.339 Sum_probs=139.2
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC--CCCeEEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH--KDEGYAID 236 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~ 236 (358)
+....|-.-|..+.++... ..+.||+. |.|+|||+....+ ..|+..+... ..-+.+..
T Consensus 413 ~~tL~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~------------------k~PvsqLdcl~rdnyiRSck 472 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGN------------------KSPVSQLDCLNRDNYIRSCK 472 (705)
T ss_pred hhhhccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCC------------------CCccccccccCcccceeeeE
Confidence 3455687778888887766 67888776 8899999988532 3444444332 34688899
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
..|++. .|++|+.-.++.|||+......+ ...+......+..++.+|+.. +.++|..||.|+|||++. ...+..+
T Consensus 473 L~pdgr-tLivGGeastlsiWDLAapTpri--kaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhn-q~~Vrqf 547 (705)
T KOG0639|consen 473 LLPDGR-TLIVGGEASTLSIWDLAAPTPRI--KAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHN-QTLVRQF 547 (705)
T ss_pred ecCCCc-eEEeccccceeeeeeccCCCcch--hhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEccc-ceeeecc
Confidence 999998 99999999999999998754433 233444446788899999998 888999999999999998 4688889
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
.+|...+.||..+++| ..|-||+-|.+|+.||+|.++++
T Consensus 548 qGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrql 586 (705)
T KOG0639|consen 548 QGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQL 586 (705)
T ss_pred cCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhh
Confidence 9999999999999999 99999999999999999988764
No 126
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=1.5e-17 Score=147.85 Aligned_cols=128 Identities=27% Similarity=0.475 Sum_probs=113.7
Q ss_pred EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcc---cCCCccccCCCcEEEEEECCCCCCEEEEEECCCc
Q 018322 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN---VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~ 300 (358)
.+.||+++|..++|+|.+...|||||.|.+|.||++...+... .....+.+|...|.-|+|+|...++|+|++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999998899999999999999997754321 1234578999999999999999999999999999
Q ss_pred EEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 301 IAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 301 I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|.||++.++ ..+.++. |...|.+++||.+| .+|+|.+.|..|+|||.|+++
T Consensus 156 v~iWnv~tg-eali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 156 VSIWNVGTG-EALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred EEEEeccCC-ceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCc
Confidence 999999996 4566676 99999999999999 999999999999999999875
No 127
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.6e-17 Score=140.80 Aligned_cols=188 Identities=17% Similarity=0.205 Sum_probs=132.2
Q ss_pred CeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc---------ccccccCCCCC-C-----CCC
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAE---------SETIVGQGAPQ-V-----SNQ 219 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~---------~~~~~~~~~~~-~-----~~~ 219 (358)
|.....+.+|.+.|++++|+.+| ..|||++.|++|+||++....+.-.. ......+...- . ..+
T Consensus 76 pl~~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 76 PLNVSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred chhhhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 44445678999999999999999 89999999999999999763221110 00000000000 0 001
Q ss_pred CCcE-----------------------EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCC
Q 018322 220 SPLV-----------------------KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS 276 (358)
Q Consensus 220 ~~~~-----------------------~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~ 276 (358)
..+. .-..|+-.+-.+-....+. +|+|++.|..|+||+++ ++.. ..+....
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk--Gq~L---~~idtnq 228 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK--GQLL---QSIDTNQ 228 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC--Ccee---eeecccc
Confidence 1111 1122344455555555555 99999999999999997 3322 3444445
Q ss_pred CcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-------CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-------SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-------~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
..-+..+.||+|+ ++|+++.---|++|.+--.+ ..+..+++|.+.|..++|+++. ..++|.|.||+++|||
T Consensus 229 ~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 229 SSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWD 306 (420)
T ss_pred ccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEee
Confidence 5566788999999 99999999999999874322 1456789999999999999998 8999999999999999
Q ss_pred CC
Q 018322 350 LR 351 (358)
Q Consensus 350 lr 351 (358)
+.
T Consensus 307 td 308 (420)
T KOG2096|consen 307 TD 308 (420)
T ss_pred cc
Confidence 75
No 128
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=5e-16 Score=134.32 Aligned_cols=178 Identities=18% Similarity=0.389 Sum_probs=135.4
Q ss_pred CeEEEEEecCCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE-------EEc
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-------KFG 226 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 226 (358)
=+...++..-.+.|+.|.|.|.. ...+|+++.||.||||+.....+.. +..... ...
T Consensus 102 Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs---------------~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 102 WVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS---------------QWTLQHEIQNVIDPPG 166 (361)
T ss_pred eEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc---------------cchhhhhhhhccCCcc
Confidence 34446677788999999999965 4789999999999999987632211 111111 122
Q ss_pred CCCCCeEEEEeCCCC--CCeEEEEeCC-----CcEEEEecCCCC-CcccCCCccccCCCcEEEEEECCCCC---CEEEEE
Q 018322 227 GHKDEGYAIDWNPIT--TGRLVTGDCN-----SCIYLWEPASDA-TWNVDPNPFIGHSASVEDLQWSPTEP---DVFASC 295 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~--~~~l~sgs~d-----g~I~lwd~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~---~~las~ 295 (358)
.+..+..|+.|+|.. ..+||.|+.+ +.+.||.....+ +|. ....+.+|+.+|++|+|.|+-. +++|++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~-kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL-KVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee-eehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 466788999999763 2278888865 589999887766 443 2456779999999999999642 489999
Q ss_pred ECCCcEEEEECCCCC-------------------CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 296 SVDGHIAIWDTRVGK-------------------SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 296 s~Dg~I~iwD~r~~~-------------------~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+.|| |+||.++... ..+..+..|++.|..+.||=.| .+|++.|+||.|++|..
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKA 317 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhh
Confidence 9999 9999997311 1233457899999999999999 99999999999999964
No 129
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.74 E-value=4.6e-16 Score=131.79 Aligned_cols=158 Identities=22% Similarity=0.298 Sum_probs=132.3
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.....++-+.|+-.+..+++| +..|+|.|..+.. .+|+..+..|.....||.|+|.|.
T Consensus 145 ~~~~e~ne~~w~~~nd~Fflt-~GlG~v~ILsyps---------------------Lkpv~si~AH~snCicI~f~p~Gr 202 (313)
T KOG1407|consen 145 QFKFEVNEISWNNSNDLFFLT-NGLGCVEILSYPS---------------------LKPVQSIKAHPSNCICIEFDPDGR 202 (313)
T ss_pred cccceeeeeeecCCCCEEEEe-cCCceEEEEeccc---------------------cccccccccCCcceEEEEECCCCc
Confidence 345778889998666444444 6669999999886 689999999999999999999999
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
+||+|+.|..+-|||+... +..+.+..+.=+|..|+||.+|+ +||++|.|..|-|=++.++. .+..+ .+.++
T Consensus 203 -yfA~GsADAlvSLWD~~EL----iC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd-~~~eI-~~~~~ 274 (313)
T KOG1407|consen 203 -YFATGSADALVSLWDVDEL----ICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGD-RVWEI-PCEGP 274 (313)
T ss_pred -eEeeccccceeeccChhHh----hhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCC-eEEEe-eccCC
Confidence 9999999999999999762 22467888889999999999999 99999999999999999975 55555 47788
Q ss_pred eEEEEEeCCCCcEEEEEeCC---------CCEEEEeCC
Q 018322 323 VNVISWNRLASCLLASGSDD---------GTFSIHDLR 351 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~D---------g~i~iwDlr 351 (358)
.+.++|+|.. .+||-+++| |.|+||-+.
T Consensus 275 t~tVAWHPk~-~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 275 TFTVAWHPKR-PLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ceeEEecCCC-ceeeEEecCCCCccccccceeEEecCC
Confidence 9999999999 888877653 678887654
No 130
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.2e-17 Score=154.10 Aligned_cols=175 Identities=22% Similarity=0.297 Sum_probs=141.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE-EEcCCCCCeEEEEe
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDW 237 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~ 237 (358)
..+.+|+|+|||+.|+.+| .+||+||+|-.+.|||.-. .+++. .-.||...|+++.|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~---------------------~KllhsI~TgHtaNIFsvKF 101 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFE---------------------YKLLHSISTGHTANIFSVKF 101 (758)
T ss_pred hhhccccceecceeecCCC-CEEeecCCcceEEeecchh---------------------cceeeeeecccccceeEEee
Confidence 5577999999999999999 7999999999999999876 34444 45689999999999
Q ss_pred CCCCCC-eEEEEeCCCcEEEEecCCCCC------cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 238 NPITTG-RLVTGDCNSCIYLWEPASDAT------WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 238 s~~~~~-~l~sgs~dg~I~lwd~~~~~~------~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
-|...+ +++||..|..|+|+|+..... .......+..|+..|-.|+-.|.+++.|-+++.||+|+-+|+|.+.
T Consensus 102 vP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 102 VPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred eccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 997543 788999999999999975211 2223456778999999999999999999999999999999999854
Q ss_pred CeeEEE---------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 311 SALTSF---------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 311 ~~~~~~---------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+-... ...--...|+..+|..+.+||.|+.|--.++||.|...+
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lk 235 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLK 235 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhcc
Confidence 322211 111234678999999999999999999999999765443
No 131
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.1e-16 Score=138.43 Aligned_cols=174 Identities=22% Similarity=0.377 Sum_probs=139.1
Q ss_pred EEEecCCCceeEEEEcCC-CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC-CCeEEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-DEGYAID 236 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~ 236 (358)
-.+.+|++.+|.++|... +++.+.+|+.||+|++||++.. ...++..+.+|. .+..+++
T Consensus 64 ~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~-------------------~e~a~~~~~~~~~~~f~~ld 124 (376)
T KOG1188|consen 64 EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ-------------------AESARISWTQQSGTPFICLD 124 (376)
T ss_pred heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc-------------------hhhhheeccCCCCCcceEee
Confidence 445689999999999875 6789999999999999999884 234556666666 4677888
Q ss_pred eCCCCCCeEEEEe----CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-
Q 018322 237 WNPITTGRLVTGD----CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS- 311 (358)
Q Consensus 237 ~s~~~~~~l~sgs----~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~- 311 (358)
-+-.+. .+++|. .+-.+.+||+|...+.. ..-+..|...|++|+|+|+.+++|+|||.||.|.|||+.....
T Consensus 125 ~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l--~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 125 LNCKKN-IIACGTELTRSDASVVLWDVRSEQQLL--RQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred ccCcCC-eEEeccccccCceEEEEEEeccccchh--hhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 776665 777774 46789999999865533 2345679999999999999999999999999999999987432
Q ss_pred -eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 312 -ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 312 -~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+...-.|.+.|.++.|...+-..|.+-+..+++.+|++..+.
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 4455556888899999998774568888899999999998765
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=9.2e-17 Score=145.65 Aligned_cols=169 Identities=17% Similarity=0.268 Sum_probs=141.9
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
..+--+|.|+++..+|.| .+++.|+..|.|++|.+.+ +..+..+.+|-..|+||.|+-
T Consensus 76 q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelss---------------------G~LL~v~~aHYQ~ITcL~fs~ 133 (476)
T KOG0646|consen 76 QYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSS---------------------GILLNVLSAHYQSITCLKFSD 133 (476)
T ss_pred hhcccccceeeeecCCCc-eEEEeecccCcEEEEEecc---------------------ccHHHHHHhhccceeEEEEeC
Confidence 344468999999999999 7888888999999999998 677888899999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCC-----CCcccCCCccccCCCcEEEEEECCCC-CCEEEEEECCCcEEEEECCCCCCee
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASD-----ATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~-----~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
++. +|+||+.||.|++|.+..- .....+...|..|+-+|+++...+.+ ...++|+|.|.++++||+..+ ..+
T Consensus 134 dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LL 211 (476)
T KOG0646|consen 134 DGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLL 211 (476)
T ss_pred CCc-EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eee
Confidence 998 9999999999999987531 11233356788999999999988763 348999999999999999985 344
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.++ .....+++++..|.+ +.++.|+.+|.|.+.++-+..
T Consensus 212 lti-~fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 212 LTI-TFPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLS 250 (476)
T ss_pred EEE-ecCCcceeEEEcccc-cEEEecCCcceEEeeehhcCC
Confidence 444 356679999999999 999999999999999887654
No 133
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=6.6e-17 Score=141.50 Aligned_cols=151 Identities=21% Similarity=0.331 Sum_probs=123.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC-CCCeEEEEeCCCcEEEE
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI-TTGRLVTGDCNSCIYLW 257 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~~l~sgs~dg~I~lw 257 (358)
..+|++-.+|.|+|||..+ .+.+..|+++...+..+.|... +...+.+|+.||+|++|
T Consensus 41 ~~vav~lSngsv~lyd~~t---------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT---------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred eeEEEEecCCeEEEEeccc---------------------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 5788889999999999987 5777889999888888888774 44488999999999999
Q ss_pred ecCCCCCcccCCCccccCC-CcEEEEEECCCCCCEEEEEEC----CCcEEEEECCCCCCeeEEE-ecCCCCeEEEEEeCC
Q 018322 258 EPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCSV----DGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRL 331 (358)
Q Consensus 258 d~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s~----Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~~p~ 331 (358)
|+|...... ...+..|. .+..+++.+..+. ++++|.. +-.|.+||+|...+++..+ ..|..+|++|+|+|.
T Consensus 100 D~Rs~~e~a--~~~~~~~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 100 DIRSQAESA--RISWTQQSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS 176 (376)
T ss_pred Eeecchhhh--heeccCCCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC
Confidence 999865533 23444554 5677777766666 8888764 6789999999976656555 789999999999999
Q ss_pred CCcEEEEEeCCCCEEEEeCCCC
Q 018322 332 ASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 332 ~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.+.+|+|||.||.|.|||+...
T Consensus 177 ~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 177 DPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred CCCeEEeecccceEEeeecCCC
Confidence 9999999999999999999754
No 134
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.7e-17 Score=162.22 Aligned_cols=217 Identities=21% Similarity=0.355 Sum_probs=172.6
Q ss_pred hcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCC
Q 018322 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDS 140 (358)
Q Consensus 61 ~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (358)
+.-...-|.+++||-|... ..|+.| +.++.|.||++.++..
T Consensus 111 ~~~~h~G~V~gLDfN~~q~----------nlLASG-----a~~geI~iWDlnn~~t------------------------ 151 (1049)
T KOG0307|consen 111 TKSKHTGPVLGLDFNPFQG----------NLLASG-----ADDGEILIWDLNKPET------------------------ 151 (1049)
T ss_pred hhcccCCceeeeeccccCC----------ceeecc-----CCCCcEEEeccCCcCC------------------------
Confidence 3445567788888876531 234434 4677999999965321
Q ss_pred CCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCC
Q 018322 141 DEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQS 220 (358)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (358)
|.- .-...-.+.|.+++|+.+-.++||+++.+|++.|||++. .+
T Consensus 152 --------------P~~-~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~---------------------~~ 195 (1049)
T KOG0307|consen 152 --------------PFT-PGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK---------------------KK 195 (1049)
T ss_pred --------------CCC-CCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC---------------------CC
Confidence 111 003346789999999998889999999999999999998 46
Q ss_pred CcEEEcCCCC--CeEEEEeCCCCCCeEEEEeCC---CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEE
Q 018322 221 PLVKFGGHKD--EGYAIDWNPITTGRLVTGDCN---SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC 295 (358)
Q Consensus 221 ~~~~~~~h~~--~v~~l~~s~~~~~~l~sgs~d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~ 295 (358)
++..+..|.. .+..|.|+|++..+|++++.| -.|.+||+|...... +.+.+|...|.++.|++.+..+++||
T Consensus 196 pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~---k~~~~H~~GilslsWc~~D~~lllSs 272 (1049)
T KOG0307|consen 196 PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL---KILEGHQRGILSLSWCPQDPRLLLSS 272 (1049)
T ss_pred cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch---hhhcccccceeeeccCCCCchhhhcc
Confidence 6666666654 578999999988788888765 489999998755443 77889999999999999997799999
Q ss_pred ECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 296 SVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 296 s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
+.|+.|.+|+..++ ..+..+...+.++..+.|+|..+.+|+.++.||.|.|+.+......
T Consensus 273 gkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~ 332 (1049)
T KOG0307|consen 273 GKDNRIICWNPNTG-EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTD 332 (1049)
T ss_pred cCCCCeeEecCCCc-eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCcc
Confidence 99999999999995 5777787788899999999999889999999999999999877643
No 135
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.73 E-value=4.4e-17 Score=152.48 Aligned_cols=171 Identities=18% Similarity=0.287 Sum_probs=138.8
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
....|+.+.|.|..+..||.+++||.|+||.+......-. ...|...+.+|...|++|.|+|....
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~--------------~~tPe~~lt~h~eKI~slRfHPLAad 691 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN--------------EMTPEKILTIHGEKITSLRFHPLAAD 691 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc--------------cCCcceeeecccceEEEEEecchhhh
Confidence 3567899999999989999999999999999976321110 25677889999999999999999887
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC-CCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-NAD 322 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-~~~ 322 (358)
.|++++.|.+|+|||+++... ...+.+|++.|.+++|||+|+ .+|+.+.||+|++|..|+..+++..-.+- +..
T Consensus 692 vLa~asyd~Ti~lWDl~~~~~----~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR 766 (1012)
T KOG1445|consen 692 VLAVASYDSTIELWDLANAKL----YSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTR 766 (1012)
T ss_pred Hhhhhhccceeeeeehhhhhh----hheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCc
Confidence 999999999999999988433 367899999999999999999 99999999999999999977666554321 233
Q ss_pred eEEEEEeCCCCcEEEEEeCC----CCEEEEeCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDD----GTFSIHDLRLLK 354 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~D----g~i~iwDlr~~~ 354 (358)
--.|.|.-+| ++++..+.| .+|.+||..+..
T Consensus 767 gARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 767 GARILWACDG-RIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred ceeEEEEecC-cEEEEecccccchhhhhhhhhhhcc
Confidence 4567899899 665555544 578888887665
No 136
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.72 E-value=3e-16 Score=136.79 Aligned_cols=174 Identities=20% Similarity=0.333 Sum_probs=129.8
Q ss_pred CeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE---cCCCCC
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF---GGHKDE 231 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~ 231 (358)
..+.....+|-+.||.|++.|..+++++++|.|..|++|++++ ..++..| .||.++
T Consensus 125 ~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~---------------------~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 125 GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT---------------------DVCVAVFGGVEGHRDE 183 (385)
T ss_pred hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC---------------------CeEEEEecccccccCc
Confidence 3455677899999999999999999999999999999999998 4666665 469999
Q ss_pred eEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc------------------ccCCCcc------ccCCCcEE-------
Q 018322 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW------------------NVDPNPF------IGHSASVE------- 280 (358)
Q Consensus 232 v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~------------------~~~~~~~------~~h~~~V~------- 280 (358)
|.+++|++++. +|+||+.|.+|.+|++....-+ ......+ ..|...|-
T Consensus 184 VLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd 262 (385)
T KOG1034|consen 184 VLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD 262 (385)
T ss_pred EEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh
Confidence 99999999999 9999999999999999832100 0000000 01211111
Q ss_pred -------------------------------------------------EEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 281 -------------------------------------------------DLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 281 -------------------------------------------------~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
-.+|.|-.. +||.|...|.|.+||++....
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCCCC
Confidence 122334444 788999999999999998443
Q ss_pred -eeEEE--ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 312 -ALTSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 312 -~~~~~--~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
...++ ......|...+|+.++ .+|+...+|++|.-||-.+
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred ccCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEeec
Confidence 22222 3345679999999999 7888888999999999653
No 137
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.72 E-value=1e-16 Score=143.39 Aligned_cols=186 Identities=14% Similarity=0.176 Sum_probs=131.4
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccc----ccc-------cCC--CCCC-----C
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESE----TIV-------GQG--APQV-----S 217 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~----~~~-------~~~--~~~~-----~ 217 (358)
.+..++-+|++.|+++.|.... ..+++|+.|.+|++||+........... ... ..+ ..+. .
T Consensus 252 r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 252 RLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred hhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEecc
Confidence 3446677899999999998877 4499999999999999987322110000 000 000 0000 2
Q ss_pred CCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCC-CccccCCCcEEEEEECCCCCCEEEEEE
Q 018322 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP-NPFIGHSASVEDLQWSPTEPDVFASCS 296 (358)
Q Consensus 218 ~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~~~~~las~s 296 (358)
...+......+. .|++|+.++++. .|++++.|.++.+.|+++........ ..+. -....+.++|||++. ++|+||
T Consensus 331 s~~~~~sv~~gg-~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~eI~~~~sA~g~k-~asDwtrvvfSpd~~-YvaAGS 406 (459)
T KOG0288|consen 331 SADKTRSVPLGG-RVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK-CASDWTRVVFSPDGS-YVAAGS 406 (459)
T ss_pred CCceeeEeecCc-ceeeEeeccCCe-EEeeecCCCceeeeecccccEEEEeeccccc-cccccceeEECCCCc-eeeecc
Confidence 233444444444 799999999998 88899999999999998854321100 0011 123488999999999 999999
Q ss_pred CCCcEEEEECCCCCCeeEEEecCCC--CeEEEEEeCCCCcEEEEEeCCCCEEEE
Q 018322 297 VDGHIAIWDTRVGKSALTSFKAHNA--DVNVISWNRLASCLLASGSDDGTFSIH 348 (358)
Q Consensus 297 ~Dg~I~iwD~r~~~~~~~~~~~h~~--~V~~i~~~p~~~~~lasgs~Dg~i~iw 348 (358)
.||.|+||++.++ ++...+....+ .|++++|+|.| ..|++++.++.+.+|
T Consensus 407 ~dgsv~iW~v~tg-KlE~~l~~s~s~~aI~s~~W~~sG-~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 407 ADGSVYIWSVFTG-KLEKVLSLSTSNAAITSLSWNPSG-SGLLSADKQKAVTLW 458 (459)
T ss_pred CCCcEEEEEccCc-eEEEEeccCCCCcceEEEEEcCCC-chhhcccCCcceEec
Confidence 9999999999985 45555533332 69999999999 889999999999999
No 138
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=8.3e-17 Score=138.79 Aligned_cols=123 Identities=24% Similarity=0.383 Sum_probs=105.8
Q ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
-.+.|.+|+|||...++|+.||.||+|++|++...+... .+....|.++|.+++|+.++. .+++|+.|+.+++||+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~--~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV--PKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLA 102 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCccc--chhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEcc
Confidence 456899999999766688899999999999998754433 356677999999999999997 99999999999999999
Q ss_pred CCCCeeEEEecCCCCeEEEEEeCCC-CcEEEEEeCCCCEEEEeCCCCCC
Q 018322 308 VGKSALTSFKAHNADVNVISWNRLA-SCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~~p~~-~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
++ .+..+..|.++|.++.|-+.. ..+|+|||-|.+|+.||+|+..+
T Consensus 103 S~--Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 103 SG--QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP 149 (347)
T ss_pred CC--CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence 85 567788999999999998765 14899999999999999997653
No 139
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.72 E-value=4.5e-17 Score=152.57 Aligned_cols=166 Identities=26% Similarity=0.389 Sum_probs=125.3
Q ss_pred EEEc--CCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEE
Q 018322 171 IRAM--TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (358)
Q Consensus 171 i~~~--p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 248 (358)
.+|+ |...++||.+.++|.|.++|.....-.. ....+..+..|...|+.+.|-| +..+|+++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~---------------ee~~lk~~~aH~nAifDl~wap-ge~~lVsa 118 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL---------------EERQLKKPLAHKNAIFDLKWAP-GESLLVSA 118 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcch---------------hhhhhcccccccceeEeeccCC-CceeEEEc
Confidence 3444 3346899999999999999988732221 1223455678999999999999 54499999
Q ss_pred eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-----------------
Q 018322 249 DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS----------------- 311 (358)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~----------------- 311 (358)
+.|.+|++||+....... ...+.||+..|.+++|+|..+.+|++|+.||.|.|||+|....
T Consensus 119 sGDsT~r~Wdvk~s~l~G--~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ 196 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVG--GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA 196 (720)
T ss_pred cCCceeeeeeeccceeec--ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC
Confidence 999999999998743322 2358899999999999999999999999999999999986320
Q ss_pred ---------eeEEEecCCCCeEE---EEEeCCCCcEEEEEeC-CCCEEEEeCCCCCC
Q 018322 312 ---------ALTSFKAHNADVNV---ISWNRLASCLLASGSD-DGTFSIHDLRLLKV 355 (358)
Q Consensus 312 ---------~~~~~~~h~~~V~~---i~~~p~~~~~lasgs~-Dg~i~iwDlr~~~~ 355 (358)
.+....+|...|.+ +.+..+. ..|||+|. |+.|+|||||+...
T Consensus 197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred CCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeeccccc
Confidence 01122445555544 4445566 68888877 99999999998754
No 140
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.72 E-value=1.8e-16 Score=149.91 Aligned_cols=158 Identities=14% Similarity=0.221 Sum_probs=133.9
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
...+.+|+..|+.+.+-|.+ .++|||.|.+|++|.-. ..+.+|.||++-|.+|+.
T Consensus 133 ~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~-----------------------~~l~tf~gHtD~VRgL~v 187 (745)
T KOG0301|consen 133 VYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG-----------------------TLLKTFSGHTDCVRGLAV 187 (745)
T ss_pred hcccCCcchheeeeeecCCC--cEEeccCcceeeeccCC-----------------------chhhhhccchhheeeeEE
Confidence 34578999999999999987 78999999999999853 556789999999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
-+.+ .|+||++||.|++|++.. .. +..+.+|+.-|.+++...++. ++++|+.|++++||+.. .+...+.
T Consensus 188 l~~~--~flScsNDg~Ir~w~~~g-e~----l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~---e~~q~I~ 256 (745)
T KOG0301|consen 188 LDDS--HFLSCSNDGSIRLWDLDG-EV----LLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD---ECVQVIT 256 (745)
T ss_pred ecCC--CeEeecCCceEEEEeccC-ce----eeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC---ceEEEEe
Confidence 9876 599999999999999932 32 367889999999999766666 99999999999999986 4566665
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.-...|+++.+-++| -|++|++||.|+||-.+.-
T Consensus 257 lPttsiWsa~~L~Ng--DIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 257 LPTTSIWSAKVLLNG--DIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred cCccceEEEEEeeCC--CEEEeccCceEEEEEeccc
Confidence 455579999988888 5888999999999987754
No 141
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=5.3e-16 Score=143.74 Aligned_cols=179 Identities=21% Similarity=0.333 Sum_probs=140.8
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
..++.+|.|+|.|+.+.+.+ ..+.+|+.||+|+.|++.......+..+ .......+.||++.++.|++
T Consensus 337 i~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~d-----------p~vl~~~l~Ghtdavw~l~~ 404 (577)
T KOG0642|consen 337 ILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSYD-----------PSVLSGTLLGHTDAVWLLAL 404 (577)
T ss_pred eEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCcccccC-----------cchhccceeccccceeeeee
Confidence 35677999999999999988 7999999999999999874221111111 12334568899999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccC----------------------------------------CCcc-----
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVD----------------------------------------PNPF----- 272 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~----------------------------------------~~~~----- 272 (358)
|+... +|++++.||++++|.......+... ...+
T Consensus 405 s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~ 483 (577)
T KOG0642|consen 405 SSTKD-RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS 483 (577)
T ss_pred ccccc-ceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence 99988 9999999999999998653220000 0000
Q ss_pred c--cCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 273 I--GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 273 ~--~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
. .....++-|.++|... +.+++..|+.|+++|..++ .+++...+|...++++++.|+| .+|++|+.||.+++|.+
T Consensus 484 ~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~-~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 484 PGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTG-KILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKL 560 (577)
T ss_pred CcccccCccceEEecCCCC-eeEecccCCceeccccccc-ccchheeeccceecceeecCCC-ceEEeecCCceeehhhc
Confidence 0 0113466788999997 9999999999999999985 5888889999999999999999 89999999999999988
Q ss_pred CC
Q 018322 351 RL 352 (358)
Q Consensus 351 r~ 352 (358)
..
T Consensus 561 d~ 562 (577)
T KOG0642|consen 561 DV 562 (577)
T ss_pred cc
Confidence 53
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.9e-16 Score=135.44 Aligned_cols=159 Identities=13% Similarity=0.152 Sum_probs=126.0
Q ss_pred eeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEE
Q 018322 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 247 (358)
.+|++|++-| .+||+|..+|.|.|||+.+ ..+...+.+|..+|.+|+||++|. .|+|
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T---------------------~~iar~lsaH~~pi~sl~WS~dgr-~Llt 82 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDT---------------------FRIARMLSAHVRPITSLCWSRDGR-KLLT 82 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccc---------------------cchhhhhhccccceeEEEecCCCC-Eeee
Confidence 8999999999 8999999999999999988 456678899999999999999999 9999
Q ss_pred EeCCCcEEEEecCCCCCcccC-----CCccccCC-------------------------------------CcEEEEEEC
Q 018322 248 GDCNSCIYLWEPASDATWNVD-----PNPFIGHS-------------------------------------ASVEDLQWS 285 (358)
Q Consensus 248 gs~dg~I~lwd~~~~~~~~~~-----~~~~~~h~-------------------------------------~~V~~v~~s 285 (358)
+|.|..|.+||+..+...... ....+-|. ..-.+..|.
T Consensus 83 sS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred ecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccccc
Confidence 999999999999885421000 00000000 000112356
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC-CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN-ADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~-~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+.|. ++++|...|.+.++|..+. .++..++... ..|..|.++..| .+|+.-+.|+.|+.|+++.
T Consensus 163 r~g~-yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 163 RRGK-YIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISD 227 (405)
T ss_pred CCCC-EEEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhh
Confidence 6666 8999999999999999884 5777776555 789999999999 8899999999999999873
No 143
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.71 E-value=5.6e-16 Score=134.85 Aligned_cols=216 Identities=19% Similarity=0.276 Sum_probs=165.6
Q ss_pred CceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCC
Q 018322 47 GEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKP 126 (358)
Q Consensus 47 ~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~ 126 (358)
..+|-+.=.+||.+-.+.. +.|++|-||+ -+|.+|- .+.|+|++.+.. -++.
T Consensus 142 tG~lraSy~~ydh~de~ta---AhsL~Fs~DG-----------eqlfaGy------krcirvFdt~Rp---Gr~c----- 193 (406)
T KOG2919|consen 142 TGKLRASYRAYDHQDEYTA---AHSLQFSPDG-----------EQLFAGY------KRCIRVFDTSRP---GRDC----- 193 (406)
T ss_pred ccccccchhhhhhHHhhhh---heeEEecCCC-----------CeEeecc------cceEEEeeccCC---CCCC-----
Confidence 4466666678877766543 4688898986 3666664 568999977532 2211
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccc
Q 018322 127 SNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESE 206 (358)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~ 206 (358)
+ .-+.+..-.++..|.|.|++|+|..+..+|.|+.-.++-||.-..
T Consensus 194 ------------------~-------vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--------- 239 (406)
T KOG2919|consen 194 ------------------P-------VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--------- 239 (406)
T ss_pred ------------------c-------chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC---------
Confidence 0 023333335677899999999999988999999998988888766
Q ss_pred ccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeC-CCcEEEEecCCCCCcccCCCccccCCC-cEEEE--
Q 018322 207 TIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSA-SVEDL-- 282 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~-~V~~v-- 282 (358)
..|++.+.+|.+.|+.|+|+++|+ .|.+|+. +-.|..||+|.....+ ..+..|.. .=..|
T Consensus 240 ------------~~pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~pv---~~L~rhv~~TNQRI~F 303 (406)
T KOG2919|consen 240 ------------RRPLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSRDPV---YALERHVGDTNQRILF 303 (406)
T ss_pred ------------CCceeeecccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhccchh---hhhhhhccCccceEEE
Confidence 688999999999999999999998 8888874 6799999999865544 44555544 22233
Q ss_pred EECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCC
Q 018322 283 QWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDD 342 (358)
Q Consensus 283 ~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~D 342 (358)
...|.++ +||+|+.||.|++||+......+..+..|...||.++++|-- .++||++..
T Consensus 304 Dld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m-pilatssGq 361 (406)
T KOG2919|consen 304 DLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM-PILATSSGQ 361 (406)
T ss_pred ecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceecCccc-ceeeeccCc
Confidence 4468888 999999999999999998656777788899999999999997 889988754
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.71 E-value=3.8e-16 Score=146.42 Aligned_cols=174 Identities=17% Similarity=0.290 Sum_probs=127.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc--EEEcCCCCCeEEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL--VKFGGHKDEGYAID 236 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~ 236 (358)
.....|.+.|..+.|.| +..+|++.+.|.++++||+.. ...+ ..+.||...+-+++
T Consensus 94 k~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~---------------------s~l~G~~~~~GH~~SvkS~c 151 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT---------------------SRLVGGRLNLGHTGSVKSEC 151 (720)
T ss_pred cccccccceeEeeccCC-CceeEEEccCCceeeeeeecc---------------------ceeecceeecccccccchhh
Confidence 34567999999999999 668999999999999999987 2222 24789999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCc-------------c---cCC-------CccccCCCcEEE---EEECCCCCC
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATW-------------N---VDP-------NPFIGHSASVED---LQWSPTEPD 290 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~-------------~---~~~-------~~~~~h~~~V~~---v~~sp~~~~ 290 (358)
|.|.++..|++|+.||.|.|||++-.+.- . ... .....+...|.+ +-+..++.
T Consensus 152 f~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~- 230 (720)
T KOG0321|consen 152 FMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES- 230 (720)
T ss_pred hccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-
Confidence 99999989999999999999999864310 0 000 111123334444 44445555
Q ss_pred EEEEEEC-CCcEEEEECCCCCC-----e--eEEEecC---CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 291 VFASCSV-DGHIAIWDTRVGKS-----A--LTSFKAH---NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 291 ~las~s~-Dg~I~iwD~r~~~~-----~--~~~~~~h---~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
.||+++. |+.|+|||+|.... + ...+..| ...+.++.....|.+++|+|. |+.|++|+++.....
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSIS 306 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcC
Confidence 7888887 99999999997421 1 1222233 335777888888866777765 999999999987653
No 145
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.2e-16 Score=142.14 Aligned_cols=184 Identities=14% Similarity=0.232 Sum_probs=146.0
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC-CCCCe
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEG 232 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v 232 (358)
.|..+.-+.+|.|+||.|.|+..+ .+||+|++|..+++|.+....... ..+|+..... |...|
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k---------------~~KPI~~~~~~H~SNI 108 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRK---------------TPKPIGVMEHPHRSNI 108 (609)
T ss_pred cchhhhhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhc---------------CCCCceeccCccccce
Confidence 445555667899999999999987 899999999999999997632221 2466665544 45799
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (358)
+||+|...+. +|.+|..+++|.+.|+.+..... ...-....+.|..+..+|..+ .|++.+.+|.|.+||.|....+
T Consensus 109 F~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qsi~--V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 109 FSLEFDLENR-FLYSGERWGTVIKHDIETKQSIY--VANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred EEEEEccCCe-eEecCCCcceeEeeecccceeee--eecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCC
Confidence 9999999887 99999999999999998754422 122223346899999999965 9999999999999999985433
Q ss_pred eEE--EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 313 LTS--FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 313 ~~~--~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
+.. .........++-|+|-.+.+|++.+..+-+.+||+|+.+.+|
T Consensus 185 ~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~ 231 (609)
T KOG4227|consen 185 ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV 231 (609)
T ss_pred CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH
Confidence 322 233455678899999999999999999999999999988775
No 146
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=3e-16 Score=140.38 Aligned_cols=167 Identities=16% Similarity=0.185 Sum_probs=136.2
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+..|..+|+-+.|+++| ++|||++.|.+.-||.+.... ..+...++.+|..+|..+.||
T Consensus 218 qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~------------------~~kl~~tlvgh~~~V~yi~wS 278 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDV------------------HFKLKKTLVGHSQPVSYIMWS 278 (519)
T ss_pred hhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCc------------------ceeeeeeeecccCceEEEEEC
Confidence 3456799999999999999 899999999999999987631 134567889999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|+.. +|++|+.+..+.+||..++.... .--.+|..++.+++|.|++. .|++|+.|++|..||+... ......+
T Consensus 279 PDdr-yLlaCg~~e~~~lwDv~tgd~~~---~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn--~~~~W~g 351 (519)
T KOG0293|consen 279 PDDR-YLLACGFDEVLSLWDVDTGDLRH---LYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGN--ILGNWEG 351 (519)
T ss_pred CCCC-eEEecCchHheeeccCCcchhhh---hcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcc--hhhcccc
Confidence 9998 99999999999999998854322 11123568899999999998 8999999999999999752 2223322
Q ss_pred C-CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 319 H-NADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 319 h-~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
- ...|.+++..++| ..+++.+.|..|++++..+
T Consensus 352 vr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 352 VRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred cccceeEEEEEcCCC-cEEEEEecccceeeechhh
Confidence 2 2458999999999 7777777999999998754
No 147
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.69 E-value=1.9e-16 Score=148.24 Aligned_cols=169 Identities=20% Similarity=0.290 Sum_probs=133.5
Q ss_pred CCceeEEEEcCCCCcEEEE--EeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc--CCCCCeEEEEeCCC
Q 018322 165 QGCVNRIRAMTQNPHICAS--WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAIDWNPI 240 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat--~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~s~~ 240 (358)
.++.+.++.+. ..+|. .+.-|.|-||+++.... -|-..+. .....|+.+.|.|.
T Consensus 581 PgEsnGfcan~---~rvAVPL~g~gG~iai~el~~PGr-------------------LPDgv~p~l~Ngt~vtDl~WdPF 638 (1012)
T KOG1445|consen 581 PGESNGFCANN---KRVAVPLAGSGGVIAIYELNEPGR-------------------LPDGVMPGLFNGTLVTDLHWDPF 638 (1012)
T ss_pred CCccCceeecc---ceEEEEecCCCceEEEEEcCCCCC-------------------CCcccccccccCceeeecccCCC
Confidence 35555554443 23333 44568999999987432 1212222 13458999999999
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCc---ccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATW---NVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~---~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
...+||+++.||.|+||.+...+.. ......+.+|...|+++.|+|-..++|++++.|.+|+|||+++. .....+.
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-~~~~~l~ 717 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-KLYSRLV 717 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh-hhhheec
Confidence 8879999999999999999775432 22345678899999999999998889999999999999999985 4556789
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
+|...|..++|+|+| +.+||.+.||+|++|.-|+..+|+
T Consensus 718 gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 718 GHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred cCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCcc
Confidence 999999999999999 999999999999999999988775
No 148
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.68 E-value=2.4e-16 Score=144.14 Aligned_cols=156 Identities=19% Similarity=0.291 Sum_probs=133.5
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.-.++.++.+|+. +++.++..||.|.|||+.+ ...+..|.||.+.+.||+.+++|. .
T Consensus 509 apaCyALa~spDa-kvcFsccsdGnI~vwDLhn---------------------q~~VrqfqGhtDGascIdis~dGt-k 565 (705)
T KOG0639|consen 509 APACYALAISPDA-KVCFSCCSDGNIAVWDLHN---------------------QTLVRQFQGHTDGASCIDISKDGT-K 565 (705)
T ss_pred chhhhhhhcCCcc-ceeeeeccCCcEEEEEccc---------------------ceeeecccCCCCCceeEEecCCCc-e
Confidence 3567788999998 7888889999999999988 567888999999999999999998 9
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeE
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (358)
|.||+-|.+|+.||++++.+.. -...++.|.++..+|++. .+|.|-..+.+-|-..+.+ ....+..|.+.|.
T Consensus 566 lWTGGlDntvRcWDlregrqlq-----qhdF~SQIfSLg~cP~~d-WlavGMens~vevlh~skp--~kyqlhlheScVL 637 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQ-----QHDFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKP--EKYQLHLHESCVL 637 (705)
T ss_pred eecCCCccceeehhhhhhhhhh-----hhhhhhhheecccCCCcc-ceeeecccCcEEEEecCCc--cceeecccccEEE
Confidence 9999999999999999853321 112357899999999999 9999999999998887753 3455678999999
Q ss_pred EEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 325 VISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
++.|.+.| .++++.+.|..+..|.+--
T Consensus 638 SlKFa~cG-kwfvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 638 SLKFAYCG-KWFVSTGKDNLLNAWRTPY 664 (705)
T ss_pred EEEecccC-ceeeecCchhhhhhccCcc
Confidence 99999999 9999999999999997643
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.7e-14 Score=124.97 Aligned_cols=188 Identities=15% Similarity=0.279 Sum_probs=137.8
Q ss_pred CCeEEEEEecCCCceeEEEEcC-CCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCe
Q 018322 154 TPILQLRKVAHQGCVNRIRAMT-QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p-~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (358)
+=.+......|.+.|.+|.|.+ .-.+++|+++.|++|.||.=... ..+.. ........++......|
T Consensus 48 ~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~--~~~~~----------~~~Wv~~ttl~DsrssV 115 (361)
T KOG2445|consen 48 TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK--SEEAH----------GRRWVRRTTLVDSRSSV 115 (361)
T ss_pred ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccc--ccccc----------cceeEEEEEeecCCcce
Confidence 3445567788999999999965 33589999999999999986421 11100 01345566777888899
Q ss_pred EEEEeCCCCCC-eEEEEeCCCcEEEEecCCCCC---ccc------CCCccccCCCcEEEEEECCCC--CCEEEEEECC--
Q 018322 233 YAIDWNPITTG-RLVTGDCNSCIYLWEPASDAT---WNV------DPNPFIGHSASVEDLQWSPTE--PDVFASCSVD-- 298 (358)
Q Consensus 233 ~~l~~s~~~~~-~l~sgs~dg~I~lwd~~~~~~---~~~------~~~~~~~h~~~V~~v~~sp~~--~~~las~s~D-- 298 (358)
+.+.|.|...| .||+++.||.++||+.-.... |.. ...+...+..+..||.|+|.. ..+||.|+.+
T Consensus 116 ~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a 195 (361)
T KOG2445|consen 116 TDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA 195 (361)
T ss_pred eEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCC
Confidence 99999998666 789999999999998765422 211 011223467889999999853 2378888776
Q ss_pred ---CcEEEEECCCCCC---eeEEEecCCCCeEEEEEeCCCC---cEEEEEeCCCCEEEEeCCCCC
Q 018322 299 ---GHIAIWDTRVGKS---ALTSFKAHNADVNVISWNRLAS---CLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 299 ---g~I~iwD~r~~~~---~~~~~~~h~~~V~~i~~~p~~~---~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+.+.||....... .+..+..|..+|+.|+|.|+-. ++||+++.|| |+||.++...
T Consensus 196 ~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 196 PHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred ccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeecc
Confidence 5899997765432 4455678999999999999742 5799999999 9999998644
No 150
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.68 E-value=6.8e-17 Score=136.00 Aligned_cols=167 Identities=19% Similarity=0.287 Sum_probs=140.7
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
-..-++.+|.|.|+....+.+. ...|+++.|-+.+|||.-+ +..+..| .|+.-|.++
T Consensus 50 dwigtfeghkgavw~~~l~~na-~~aasaaadftakvw~a~t---------------------gdelhsf-~hkhivk~~ 106 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVT---------------------GDELHSF-EHKHIVKAV 106 (334)
T ss_pred CcEEeeeccCcceeeeecCchh-hhhhhhcccchhhhhhhhh---------------------hhhhhhh-hhhheeeeE
Confidence 3456788999999999998877 7899999999999999876 4555555 577889999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
+|+.+.. +|++|+.+..+++||++..... +..+.+|++.|..+-|+.... .|++.+.|++||+||.|++ ..+.+
T Consensus 107 af~~ds~-~lltgg~ekllrvfdln~p~Ap---p~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTg-t~v~s 180 (334)
T KOG0278|consen 107 AFSQDSN-YLLTGGQEKLLRVFDLNRPKAP---PKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTG-TEVQS 180 (334)
T ss_pred Eecccch-hhhccchHHHhhhhhccCCCCC---chhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccC-cEEEE
Confidence 9999998 9999999999999999775443 478899999999999998777 8888899999999999996 45666
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+. .+..|+++..+++| .+|.++ .-+.|.+||..++.
T Consensus 181 L~-~~s~VtSlEvs~dG-~ilTia-~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 181 LE-FNSPVTSLEVSQDG-RILTIA-YGSSVKFWDAKSFG 216 (334)
T ss_pred Ee-cCCCCcceeeccCC-CEEEEe-cCceeEEecccccc
Confidence 64 45679999999999 666554 56789999998875
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.68 E-value=3.3e-15 Score=135.39 Aligned_cols=194 Identities=15% Similarity=0.178 Sum_probs=137.2
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc----cccccc-----cccCCCCCC-------------
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNA----LAESET-----IVGQGAPQV------------- 216 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~----~~~~~~-----~~~~~~~~~------------- 216 (358)
....+|.++|++|.|+|.++..+.+.|.||+|++-|+...... .+.... .........
T Consensus 228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD 307 (498)
T KOG4328|consen 228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVID 307 (498)
T ss_pred EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEE
Confidence 4567899999999999999888999999999999999763211 100000 000000000
Q ss_pred --CCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEE
Q 018322 217 --SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (358)
Q Consensus 217 --~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (358)
........+.-|...|.+|+++|..+.+||||+.|++.+|||++.......+......|...|.+..|||.+.+ |++
T Consensus 308 ~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~T 386 (498)
T KOG4328|consen 308 LRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLT 386 (498)
T ss_pred eecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEe
Confidence 11222334456777999999999998899999999999999998754432112334569999999999999995 999
Q ss_pred EECCCcEEEEECC---CCCCeeEEEe---cCCCCe--EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 295 CSVDGHIAIWDTR---VGKSALTSFK---AHNADV--NVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 295 ~s~Dg~I~iwD~r---~~~~~~~~~~---~h~~~V--~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
-+.|..|||||.. ....+...+. .+...+ ....|.|+. .+|++|-.-..|-|+|-..++
T Consensus 387 T~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~-~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 387 TCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY-NLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred eccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc-cEEEEeccCcceeEEcCCCCE
Confidence 9999999999984 2122333331 122222 345899988 899999998889999977655
No 152
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=2.3e-15 Score=130.35 Aligned_cols=158 Identities=18% Similarity=0.227 Sum_probs=125.7
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
....|.+++|+|.+.. |+.++-||.+++|++... . +...-.|..++.+.+|.+..
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~---------------------~-l~~~~~~~~plL~c~F~d~~-- 66 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPAN---------------------S-LKLKFKHGAPLLDCAFADES-- 66 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccch---------------------h-hhhheecCCceeeeeccCCc--
Confidence 3578999999998854 445579999999999872 2 22233578899999999854
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.+++|+.||.|+++|++++.. ..+..|...|.+|..++-.. .+++||.|++|++||.|. ..++..+.. ...|
T Consensus 67 ~~~~G~~dg~vr~~Dln~~~~-----~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~-~~~~~~~d~-~kkV 138 (323)
T KOG1036|consen 67 TIVTGGLDGQVRRYDLNTGNE-----DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRN-KVVVGTFDQ-GKKV 138 (323)
T ss_pred eEEEeccCceEEEEEecCCcc-----eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccc-ccccccccc-CceE
Confidence 799999999999999987543 34566999999999998766 999999999999999997 334444433 3378
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
.++..+. ..|+.|+.+..+.+||||+...+.
T Consensus 139 y~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 139 YCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred EEEeccC---CEEEEeecCceEEEEEcccccchh
Confidence 8877763 678889999999999999987653
No 153
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=7.3e-15 Score=141.75 Aligned_cols=188 Identities=22% Similarity=0.301 Sum_probs=137.3
Q ss_pred EEEecCCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccc---c--------------ccCCCC------
Q 018322 159 LRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESET---I--------------VGQGAP------ 214 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~---~--------------~~~~~~------ 214 (358)
.....|..+|+.+.|.... +.-|++++.||.|+.|++............ . ..+...
T Consensus 285 ~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi 364 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI 364 (555)
T ss_pred cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence 4556799999999997644 244778888999999988652221100000 0 000000
Q ss_pred --------------CC-CCC----CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccC
Q 018322 215 --------------QV-SNQ----SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275 (358)
Q Consensus 215 --------------~~-~~~----~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h 275 (358)
.. ... +++..+..|.+.|+++.++|.....|++++ |.+++||.-.....+ ...+..+
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~P---l~~~~~~ 440 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASP---LLSLDSS 440 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCc---chhhhhc
Confidence 00 111 234456678889999999999985666666 999999987522222 3456667
Q ss_pred CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
...|++++|||..+.+|+++..||.|.|||++... .|+.+...+....+.+.|++.| .+|+.|...|++++|++.
T Consensus 441 ~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 441 PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLS 516 (555)
T ss_pred cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcC
Confidence 78899999999999999999999999999998632 3777776677788999999999 999999999999999995
No 154
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.67 E-value=6.6e-15 Score=131.66 Aligned_cols=97 Identities=23% Similarity=0.423 Sum_probs=74.2
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+-.|...||+|||+|.| .++|+|+++|.|.+|-.... +.. .... ..............+.+|..+++.|+|+
T Consensus 59 s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~-~~~-~~d~---e~~~~ke~w~v~k~lr~h~~diydL~Ws 132 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDV-RIF-DADT---EADLNKEKWVVKKVLRGHRDDIYDLAWS 132 (434)
T ss_pred ecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCc-CCc-cccc---hhhhCccceEEEEEecccccchhhhhcc
Confidence 4667799999999999999 79999999999999987631 000 0000 0000001234456788999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCC
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASD 262 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~ 262 (358)
|++. ++++|+.|..+++||+..+
T Consensus 133 ~d~~-~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 133 PDSN-FLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred CCCc-eeeeeeccceEEEEEeccc
Confidence 9998 9999999999999999875
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.66 E-value=7.1e-16 Score=137.78 Aligned_cols=171 Identities=20% Similarity=0.385 Sum_probs=139.6
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
...+|..+.|.+.....+|||+.|..|+||-+......... .....+..+..|...|+++.|+|.|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~------------~~V~y~s~Ls~H~~aVN~vRf~p~ge- 78 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD------------MKVEYLSSLSRHTRAVNVVRFSPDGE- 78 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc------------eeEEEeecccCCcceeEEEEEcCCcC-
Confidence 34789999999887569999999999999999773322110 01344567889999999999999998
Q ss_pred eEEEEeCCCcEEEEecCC-------------CCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 244 RLVTGDCNSCIYLWEPAS-------------DATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~-------------~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
+||||+.+|.|.+|-... ...|.+ .+.+.+|...|.+++|+|++. ++++++.|.++++||++.+
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v-~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G- 155 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVV-KKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAG- 155 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEE-EEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccc-
Confidence 999999999999998761 112332 234667999999999999998 9999999999999999996
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.....+..|...|+-++|.|.+ .++++-+.|...+++.+.
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAK 195 (434)
T ss_pred eeEeeccccccccceeecchhh-hhhhhhccCcccceeeee
Confidence 5677788999999999999999 899999998877776654
No 156
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.66 E-value=2.5e-15 Score=142.54 Aligned_cols=188 Identities=18% Similarity=0.169 Sum_probs=139.4
Q ss_pred EEEecCCCceeEEEEcCCC--CcEEEEEeCCCcEEEEeCCCCccc---ccccc-------cc--------ccCCCCCC--
Q 018322 159 LRKVAHQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNA---LAESE-------TI--------VGQGAPQV-- 216 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~---~~~~~-------~~--------~~~~~~~~-- 216 (358)
..+.+|..+|.|+.|+.-. ..+||+++.|.-|+|||+.....- ++.+. +. ...+..+.
T Consensus 495 ~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim 574 (1080)
T KOG1408|consen 495 CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM 574 (1080)
T ss_pred hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh
Confidence 4556899999999998532 579999999999999999763221 11110 00 00111111
Q ss_pred ----CCCCCcEEEcCC-----CCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC
Q 018322 217 ----SNQSPLVKFGGH-----KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT 287 (358)
Q Consensus 217 ----~~~~~~~~~~~h-----~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~ 287 (358)
........|..| ...+|.++..|... ++++++.|..|+||++.++ +.....+--.+|.+..-.|...|.
T Consensus 575 Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPS 652 (1080)
T KOG1408|consen 575 FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPS 652 (1080)
T ss_pred eehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEecccc-ceeeeecccccCCCceEEEEECCC
Confidence 000011112222 23688999999987 9999999999999999874 433222223447778888999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 288 EPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 288 ~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+- ++|+...|+++.++|.-++ .++.+..+|...|+.+.|.++. ..|++.+.||.|.||.+.
T Consensus 653 gi-Y~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 653 GI-YLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cc-EEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeecccc-hhheeecCCceEEEEECc
Confidence 98 9999999999999999985 6999999999999999999999 899999999999999875
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.66 E-value=2.9e-15 Score=130.73 Aligned_cols=167 Identities=17% Similarity=0.334 Sum_probs=134.9
Q ss_pred EecCCCceeEEEEcCC----CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE--cCCCCCeEE
Q 018322 161 KVAHQGCVNRIRAMTQ----NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GGHKDEGYA 234 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~----~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~ 234 (358)
+..|..+|..+.|++. .+.++||.+. ..+.||....... ...++.+ ..|....+.
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~------------------ir~lq~y~D~d~~Esfyt 94 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG------------------IRLLQSYADEDHDESFYT 94 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc------------------eeeeeeccCCCCCcceEE
Confidence 4568899999999853 3678888776 4788998876320 1122222 136668889
Q ss_pred EEeCCCC---CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 235 IDWNPIT---TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 235 l~~s~~~---~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
++|+-+. .-+||.|+.-|.|+|.|+.+ ++. ...+.+|...|+.|.++|..++++++||.|.+||+|++++. .
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~---~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-~ 169 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQC---SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-V 169 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecch-hhh---ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-e
Confidence 9997542 22899999999999999976 333 36788999999999999999999999999999999999984 5
Q ss_pred eeEEE---ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 312 ALTSF---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 312 ~~~~~---~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
++..+ .+|...|.++.|++++ .+|+|+|.|.+|++|++..
T Consensus 170 Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 170 CVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred EEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecCh
Confidence 77666 6799999999999999 8999999999999999984
No 158
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.65 E-value=5.6e-15 Score=140.23 Aligned_cols=196 Identities=16% Similarity=0.182 Sum_probs=136.4
Q ss_pred CeEEEEEecCCCceeEEEEcCCC----------CcEEEEEeCCCcEEEEeCCCCccccc------ccccccc-CCCCCC-
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQN----------PHICASWADTGHVQVWDLRSHLNALA------ESETIVG-QGAPQV- 216 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~----------~~~lat~s~dg~V~iwd~~~~~~~~~------~~~~~~~-~~~~~~- 216 (358)
+-....+.-|...|+.|..-|-+ +..|.||+.|++|++|++....+..- ....... ......
T Consensus 359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 33346677899999999877722 35799999999999999976322110 0000000 000000
Q ss_pred --------CCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC--
Q 018322 217 --------SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-- 286 (358)
Q Consensus 217 --------~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-- 286 (358)
.-.+.....-+....+.+|+.+|++. +||+|++-|+|++|++.+... ...+..|.+.|.|+.++.
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGDr~GnlrVy~Lq~l~~----~~~~eAHesEilcLeyS~p~ 513 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGDRGGNLRVYDLQELEY----TCFMEAHESEILCLEYSFPV 513 (1080)
T ss_pred hhhhccCCcccccchhhcCcccceEEEEECCCcc-eecccCccCceEEEEehhhhh----hhheecccceeEEEeecCch
Confidence 00111112223345789999999998 999999999999999976322 245678999999999984
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCC----------------------------------
Q 018322 287 TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLA---------------------------------- 332 (358)
Q Consensus 287 ~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~---------------------------------- 332 (358)
.+..+||+++.|..|+|||+...-.++.++..|.+.|++|.|.-.|
T Consensus 514 ~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t 593 (1080)
T KOG1408|consen 514 LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT 593 (1080)
T ss_pred hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc
Confidence 2334899999999999999976555667777787777777775433
Q ss_pred --------------CcEEEEEeCCCCEEEEeCCCCCC
Q 018322 333 --------------SCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 333 --------------~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
..++++++.|..|+|||+.++++
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 25778888888888888887765
No 159
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.65 E-value=2.9e-14 Score=130.67 Aligned_cols=183 Identities=20% Similarity=0.299 Sum_probs=135.0
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCC------C-----------C----C
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG------A-----------P----Q 215 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~------~-----------~----~ 215 (358)
+..+...|.+.|.++....+| .|.+|+.|..|..||-. .+.....+.....+ . . .
T Consensus 279 ~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~--y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G 354 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDN--YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG 354 (626)
T ss_pred EEeEeeecCCceEEEEEecCc--cEeecCccceEEecccc--ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence 334444999999999999998 45559999999999932 22221111111000 0 0 0
Q ss_pred CCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEE
Q 018322 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC 295 (358)
Q Consensus 216 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~ 295 (358)
...........+|..+.+.++-+|..+ +|++++.|+.++||+ ...-.|. ..-..++.++.|+|.+ ++|.|
T Consensus 355 t~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~-~~k~~wt------~~~~d~~~~~~fhpsg--~va~G 424 (626)
T KOG2106|consen 355 TLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN-DHKLEWT------KIIEDPAECADFHPSG--VVAVG 424 (626)
T ss_pred eecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc-CCceeEE------EEecCceeEeeccCcc--eEEEe
Confidence 012233345578999999999999998 999999999999999 2222222 1135688999999999 79999
Q ss_pred ECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 296 SVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 296 s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
...|...+.|+.+ +.+.+++..+.++++++|+|+| .+||.|+.|+.|+||-+......
T Consensus 425 t~~G~w~V~d~e~--~~lv~~~~d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 425 TATGRWFVLDTET--QDLVTIHTDNEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred eccceEEEEeccc--ceeEEEEecCCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcE
Confidence 9999999999998 3455555558999999999999 99999999999999988765543
No 160
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.5e-15 Score=139.36 Aligned_cols=181 Identities=17% Similarity=0.333 Sum_probs=142.3
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
+.+++..|...|..+.|.|.. -.|++++.||+|.+|++..... +......|+.+|.+|.++|.|++
T Consensus 286 ik~tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~-------------s~~~~~epi~tfraH~gPVl~v~ 351 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKK-------------SAEKDVEPILTFRAHEGPVLCVV 351 (577)
T ss_pred eeeeeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCC-------------ccccceeeeEEEecccCceEEEE
Confidence 445788899999999999988 4889999999999999944110 01113689999999999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCC------CCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASD------ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~------~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
..+.+. .+++|+.||+|+.|++... ....+....+.||+..|..+++|+... .|++|+.||++|+|......
T Consensus 352 v~~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 352 VPSNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred ecCCce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcC
Confidence 999998 9999999999999976521 122333567899999999999999887 89999999999999875421
Q ss_pred Ce-------------------------------------------eEEE-------ecCCCCeEEEEEeCCCCcEEEEEe
Q 018322 311 SA-------------------------------------------LTSF-------KAHNADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 311 ~~-------------------------------------------~~~~-------~~h~~~V~~i~~~p~~~~~lasgs 340 (358)
.+ +..+ ......++.+.++|.+ .+.+++.
T Consensus 430 ~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~h 508 (577)
T KOG0642|consen 430 PCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAH 508 (577)
T ss_pred ccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecc
Confidence 10 0000 0012357889999999 8999999
Q ss_pred CCCCEEEEeCCCCC
Q 018322 341 DDGTFSIHDLRLLK 354 (358)
Q Consensus 341 ~Dg~i~iwDlr~~~ 354 (358)
.|+.|+++|..+++
T Consensus 509 ed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGK 522 (577)
T ss_pred cCCceecccccccc
Confidence 99999999998775
No 161
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=9.1e-15 Score=141.09 Aligned_cols=175 Identities=22% Similarity=0.313 Sum_probs=137.0
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc-EEEcCCCCCeEEEEeCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL-VKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~ 241 (358)
.-...|.++.|+|..++++|.|..+|+|.+||+..+.... ..++ .....|..+++++.|....
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~----------------~s~ls~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP----------------PSGLSALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC----------------CcccccccccCCcCeEEEEEeccC
Confidence 3578999999999999999999999999999999853221 0111 2234688899999997654
Q ss_pred CC-eEEEEeCCCcEEEEecCCCCCc-----------------------------------------------------c-
Q 018322 242 TG-RLVTGDCNSCIYLWEPASDATW-----------------------------------------------------N- 266 (358)
Q Consensus 242 ~~-~l~sgs~dg~I~lwd~~~~~~~-----------------------------------------------------~- 266 (358)
.+ -|++++.||.|+.|+++.-... .
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~ 383 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPA 383 (555)
T ss_pred CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccc
Confidence 42 5899999999999987642100 0
Q ss_pred -----cCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC
Q 018322 267 -----VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 267 -----~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~ 341 (358)
.....+..|.++|+.+.++|.+..+|++++ |.+|+||.......|+..+..+...|++++|+|..+.+++++..
T Consensus 384 ~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~ 462 (555)
T KOG1587|consen 384 PEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG 462 (555)
T ss_pred ccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcC
Confidence 001123357789999999999987888888 99999999874456888888888889999999999999999999
Q ss_pred CCCEEEEeCCCCC
Q 018322 342 DGTFSIHDLRLLK 354 (358)
Q Consensus 342 Dg~i~iwDlr~~~ 354 (358)
||.|.||||..-.
T Consensus 463 ~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 463 DGNLDIWDLLQDD 475 (555)
T ss_pred CCceehhhhhccc
Confidence 9999999998654
No 162
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.64 E-value=1.7e-14 Score=139.23 Aligned_cols=158 Identities=18% Similarity=0.279 Sum_probs=129.2
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
..|.++|+.++...-+ +++++++.+|.++.||+.. ..++..+. -..++.++..+...
T Consensus 490 ~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~---------------------k~l~~~l~-l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 490 PAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKK---------------------KVLKKSLR-LGSSITGIVYHRVS 546 (910)
T ss_pred ccccCceeEEEecCCC-ceEEEccCcceEEEEecCC---------------------cceeeeec-cCCCcceeeeeehh
Confidence 4799999999998887 7899999999999999987 23333332 23466677777766
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
. .++.+..|-.|+++|..+. +. .+.|.||+..|++++|||+|+ .+++++.|++||+||+.++ .++-.+ .-..
T Consensus 547 ~-l~a~~~ddf~I~vvD~~t~-kv---vR~f~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlpt~-~lID~~-~vd~ 618 (910)
T KOG1539|consen 547 D-LLAIALDDFSIRVVDVVTR-KV---VREFWGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLPTG-TLIDGL-LVDS 618 (910)
T ss_pred h-hhhhhcCceeEEEEEchhh-hh---hHHhhccccceeeeEeCCCCc-EEEEeecCCcEEEEeccCc-ceeeeE-ecCC
Confidence 5 8999999999999999763 22 478999999999999999999 9999999999999999985 344333 3466
Q ss_pred CeEEEEEeCCCCcEEEEEeCC-CCEEEEeCC
Q 018322 322 DVNVISWNRLASCLLASGSDD-GTFSIHDLR 351 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~D-g~i~iwDlr 351 (358)
++..++|+|+| .+|||...| .-|++|-=+
T Consensus 619 ~~~sls~SPng-D~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 619 PCTSLSFSPNG-DFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred cceeeEECCCC-CEEEEEEecCceEEEEEch
Confidence 78999999999 999999888 579999543
No 163
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=2.3e-14 Score=124.79 Aligned_cols=178 Identities=15% Similarity=0.177 Sum_probs=146.9
Q ss_pred CeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
......+..|...|++|.|+|.. +.|+||+.|..-++|...... ..+|...+..+....++
T Consensus 45 w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~------------------~WkptlvLlRiNrAAt~ 105 (361)
T KOG1523|consen 45 WEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGG------------------TWKPTLVLLRINRAATC 105 (361)
T ss_pred ceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCCCC------------------eeccceeEEEeccceee
Confidence 44556778899999999999998 688999999999999985311 46888888899999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC-----CC
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR-----VG 309 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r-----~~ 309 (358)
+.|+|.++ .||+|+....|.||-+.....|-+....-..+.+.|+++.|+|++- ++++|+.|+..|+|..- ..
T Consensus 106 V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdek 183 (361)
T KOG1523|consen 106 VKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEK 183 (361)
T ss_pred EeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeeeccccC
Confidence 99999998 9999999999999999877776544444556788999999999998 99999999999999542 10
Q ss_pred --C----------CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 310 --K----------SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 310 --~----------~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
. ..+..+....+.|..+.|+|.| ..|+-.+.|+.+.+-|.....
T Consensus 184 pap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 184 PAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCc
Confidence 0 1233344567889999999999 899999999999999987765
No 164
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=6.6e-14 Score=132.39 Aligned_cols=171 Identities=21% Similarity=0.289 Sum_probs=132.5
Q ss_pred CCeEEEEEecC-CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCe
Q 018322 154 TPILQLRKVAH-QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (358)
Q Consensus 154 ~~~~~~~~~~H-~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (358)
...++..+.++ .+.|..++|++.+ .|.+.+.+|.|.-||+.. .++...+....+.|
T Consensus 57 ~w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~---------------------lk~~~~~d~~gg~I 113 (691)
T KOG2048|consen 57 NWFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSITEWDLHT---------------------LKQKYNIDSNGGAI 113 (691)
T ss_pred CceeeEEEecCCCCceeeEEEccCC--eEEeecCCceEEEEeccc---------------------CceeEEecCCCcce
Confidence 44455555555 4799999999766 566778889999999987 67777888888899
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (358)
++++.+|.+. .++.|+.||.++.+++.. +. +...+.+...++.|.+|+|+|++. .+++|+.||.|++||...+..
T Consensus 114 Wsiai~p~~~-~l~IgcddGvl~~~s~~p-~~-I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~Iriwd~~~~~t- 188 (691)
T KOG2048|consen 114 WSIAINPENT-ILAIGCDDGVLYDFSIGP-DK-ITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDGVIRIWDVKSGQT- 188 (691)
T ss_pred eEEEeCCccc-eEEeecCCceEEEEecCC-ce-EEEEeecccccceEEEEEecCCcc-EEEecccCceEEEEEcCCCce-
Confidence 9999999998 999999999777777654 22 222344555679999999999997 899999999999999998643
Q ss_pred eEEE-------e-cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 313 LTSF-------K-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 313 ~~~~-------~-~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+... . ....-|+++.|-.++ .|++|..-|+|.+||...+.
T Consensus 189 ~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 189 LHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcc
Confidence 3211 1 123357788887666 89999999999999987653
No 165
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.64 E-value=4.7e-15 Score=140.33 Aligned_cols=169 Identities=16% Similarity=0.267 Sum_probs=137.0
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCC-----cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTG-----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
.++.+|-.+|++++.+|.+ +++||+.... .|+||+... ...+..+.+|.-.|+
T Consensus 519 ~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~---------------------W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTAN---------------------WLQVQELEGHSLTVT 576 (764)
T ss_pred HHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccc---------------------hhhhheecccceEEE
Confidence 4568899999999999999 8999987653 489999887 566668899999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-Ce
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SA 312 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~ 312 (358)
.|+|||++. +|++.+.|.++.||.................|+..|.+..|+|++. .|||+|.|++|++|...... ..
T Consensus 577 ~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~ 654 (764)
T KOG1063|consen 577 RLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKY 654 (764)
T ss_pred EEEECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhh
Confidence 999999999 9999999999999998553322211233667999999999999998 79999999999999887641 12
Q ss_pred eE--EEecCCCCeEEEEEeCCC----CcEEEEEeCCCCEEEEeCC
Q 018322 313 LT--SFKAHNADVNVISWNRLA----SCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 313 ~~--~~~~h~~~V~~i~~~p~~----~~~lasgs~Dg~i~iwDlr 351 (358)
+. ....+...|+.++|.|-- ..+++.|-..|.|.+|...
T Consensus 655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 22 235688899999998743 1378888899999999854
No 166
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=5e-15 Score=128.86 Aligned_cols=164 Identities=20% Similarity=0.305 Sum_probs=139.0
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-..+|+|.+|+++. ..+|.+-....|.||...... ...+..++..|...|++|+|+|..+
T Consensus 9 ~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~------------------~w~~~htls~Hd~~vtgvdWap~sn- 68 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGAD------------------LWEPAHTLSEHDKIVTGVDWAPKSN- 68 (361)
T ss_pred ccCceeeeeecCCC-ceEEeccCCceEEEEEecCCC------------------CceeceehhhhCcceeEEeecCCCC-
Confidence 35899999999999 789999999999999987621 2577888999999999999999998
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC---eeEEEecCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS---ALTSFKAHN 320 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~---~~~~~~~h~ 320 (358)
+|++|+.|..-++|....++.|... -.+..+...+++|.|+|.++ .||+||.-..|.||-+..... ..+.-+.+.
T Consensus 69 rIvtcs~drnayVw~~~~~~~Wkpt-lvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGTWKPT-LVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIR 146 (361)
T ss_pred ceeEccCCCCccccccCCCCeeccc-eeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccc
Confidence 9999999999999999777777632 23556889999999999998 999999999999998876332 112235678
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+.|++++|+|++ -+|++|+.|+.++||..
T Consensus 147 Stv~sldWhpnn-VLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 147 STVTSLDWHPNN-VLLAAGSTDGKCRVFSA 175 (361)
T ss_pred cceeeeeccCCc-ceecccccCcceeEEEE
Confidence 899999999999 99999999999999853
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.63 E-value=1.6e-15 Score=138.58 Aligned_cols=159 Identities=22% Similarity=0.281 Sum_probs=132.9
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
..+|+++.++ .++++|+..+.|+|||+.. ......+.+|+..|+++.++-... +
T Consensus 82 ~~Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~---------------------kl~hr~lkdh~stvt~v~YN~~De-y 135 (673)
T KOG4378|consen 82 AFCVACASQS----LYEISGGQSGCVKIWDLRA---------------------KLIHRFLKDHQSTVTYVDYNNTDE-Y 135 (673)
T ss_pred HHHHhhhhcc----eeeeccCcCceeeehhhHH---------------------HHHhhhccCCcceeEEEEecCCcc-e
Confidence 3455555554 6899999999999999986 345567889999999999999888 9
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccC-CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE-EecCCCC
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGH-SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS-FKAHNAD 322 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~-~~~h~~~ 322 (358)
||+++..|-|.|..+.+..+ ..+|... ...|.-+.++|..+.+|.+++.+|.|.+||+... .++.. ..+|.++
T Consensus 136 iAsvs~gGdiiih~~~t~~~----tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-sp~~~~~~~HsAP 210 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQK----TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-SPIFHASEAHSAP 210 (673)
T ss_pred eEEeccCCcEEEEecccCcc----ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC-CcccchhhhccCC
Confidence 99999999999999987443 2345433 4567789999999999999999999999999874 44444 4889999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
...|+|+|.++.+|++.|.|..|.+||++..+
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeeccccc
Confidence 99999999998999999999999999998653
No 168
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=5.1e-15 Score=125.68 Aligned_cols=173 Identities=18% Similarity=0.259 Sum_probs=132.4
Q ss_pred cCCCceeEEEEcCCC--CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 163 AHQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
+-.|.|.|.++.... ..+++.|-++|.|.+||++.....+.... ..+.......|..++.++++.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~-----------~~kv~~~~ash~qpvlsldyas~ 216 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ-----------SSKVESPNASHKQPVLSLDYASS 216 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc-----------ccccccchhhccCcceeeeechh
Confidence 345788888754322 35778888999999999998533222111 13444456679999999999987
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
.. .=++|+.+..+..|.++.............-....|..+..-|++. +|||++-|+.||||..|+. .++..++.|.
T Consensus 217 ~~-rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl-~pLAVLkyHs 293 (323)
T KOG0322|consen 217 CD-RGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL-NPLAVLKYHS 293 (323)
T ss_pred hc-CCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC-Cchhhhhhhh
Confidence 65 6677888889999999764222211222223345688899999999 9999999999999999995 5888889999
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+.|++++|+|+. .++|.+|.|++|.+|+|
T Consensus 294 agvn~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 AGVNAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred cceeEEEeCCCC-chhhhccCCceEEeeec
Confidence 999999999997 89999999999999986
No 169
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=1.2e-14 Score=134.11 Aligned_cols=181 Identities=13% Similarity=0.210 Sum_probs=136.5
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCC-------CCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG-------APQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
+..|+||+|-|.++.++...-.+|.+++||...........-...... ........|+..+.--+..|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 478999999998888888889999999998744222111111111100 0111234677776666678999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
+|++. +||+.+.||.++|+|..+.. .. ..+...-+...||+|||+++ +|++|+.|--|.||.+.. ++.+..-+
T Consensus 299 S~DG~-~LA~VSqDGfLRvF~fdt~e-Ll---g~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~e-rRVVARGq 371 (636)
T KOG2394|consen 299 SPDGK-YLATVSQDGFLRIFDFDTQE-LL---GVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFEE-RRVVARGQ 371 (636)
T ss_pred cCCCc-eEEEEecCceEEEeeccHHH-HH---HHHHhhccceEEEEEcCCcc-EEEecCCcceEEEEEecc-ceEEEecc
Confidence 99998 99999999999999997632 11 23344457899999999999 999999999999999987 45777779
Q ss_pred cCCCCeEEEEEeCC-----------------------------------------------CCcEEEEEeCCCCEEEEeC
Q 018322 318 AHNADVNVISWNRL-----------------------------------------------ASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 318 ~h~~~V~~i~~~p~-----------------------------------------------~~~~lasgs~Dg~i~iwDl 350 (358)
+|.++|+.|+|.|- -.+.|.+.+.|.++++||+
T Consensus 372 GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDl 451 (636)
T KOG2394|consen 372 GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDL 451 (636)
T ss_pred ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEec
Confidence 99999999999831 0245788899999999998
Q ss_pred CC
Q 018322 351 RL 352 (358)
Q Consensus 351 r~ 352 (358)
..
T Consensus 452 te 453 (636)
T KOG2394|consen 452 TE 453 (636)
T ss_pred ch
Confidence 63
No 170
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.9e-14 Score=133.92 Aligned_cols=168 Identities=18% Similarity=0.251 Sum_probs=134.4
Q ss_pred EEEec-CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC-CeEEEE
Q 018322 159 LRKVA-HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAID 236 (358)
Q Consensus 159 ~~~~~-H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~ 236 (358)
++++. -+.+|.+++|+.+. +.||.+-.+|.|-||++.. ..-....+.++.+ .|.+|+
T Consensus 18 crf~d~~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~--------------------~w~~~~vi~g~~drsIE~L~ 76 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSN--------------------NWFLEPVIHGPEDRSIESLA 76 (691)
T ss_pred EEEEeeeccceEEEEEeccC-CceeeeccCCcEEEEccCC--------------------CceeeEEEecCCCCceeeEE
Confidence 44444 36899999999988 6799999999999999988 3445556677664 899999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-eeEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-ALTS 315 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-~~~~ 315 (358)
|++.+ +|.|.+.+|.|.-||+.+... ...+....+.|.+++.+|.+. .++.|+.||.+.+++...+.- --..
T Consensus 77 W~e~~--RLFS~g~sg~i~EwDl~~lk~----~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 77 WAEGG--RLFSSGLSGSITEWDLHTLKQ----KYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred EccCC--eEEeecCCceEEEEecccCce----eEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEee
Confidence 99544 799999999999999988443 234556678999999999987 999999999777777765321 1112
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+....+.|.+++|+|++ ..|++|+.||.|++||..++..
T Consensus 150 l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 150 LMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred cccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCce
Confidence 34457899999999999 8899999999999999987754
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=9.9e-14 Score=116.69 Aligned_cols=174 Identities=18% Similarity=0.238 Sum_probs=118.0
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
....+|.++|+.+.|.. .+|.+|++ |.|+-|..+....+........ ...|..+-..-..+|.++...
T Consensus 56 v~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe--------~~~P~~~~~~evPeINam~ld 123 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEWNEEEESLATKRLWE--------VKIPMQVDAVEVPEINAMWLD 123 (325)
T ss_pred eeccccCCCeeeeeeeh---hheeeccC-ceEEEeeehhhhhhccchhhhh--------hcCccccCcccCCccceeEec
Confidence 45589999999999983 46777665 9999999877443221111111 012222211223478999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe-
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK- 317 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~- 317 (358)
|... -++.++.|+.|+-||+.+ ++.. +.+.||+..|.++.--.... .+++|+.||++||||+++. +++..+.
T Consensus 124 P~en-Si~~AgGD~~~y~~dlE~-G~i~---r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~-k~v~~ie~ 196 (325)
T KOG0649|consen 124 PSEN-SILFAGGDGVIYQVDLED-GRIQ---REYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQ-KHVSMIEP 196 (325)
T ss_pred cCCC-cEEEecCCeEEEEEEecC-CEEE---EEEcCCcceeeeeeecccCc-ceeecCCCccEEEEecccc-ceeEEecc
Confidence 8877 444445799999999988 4433 78999999999998733333 6999999999999999995 4444442
Q ss_pred --------cC-CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 318 --------AH-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 318 --------~h-~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.| +..|-+++-+. ..|+.|+ -..+.+|.||+...
T Consensus 197 yk~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 197 YKNPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred ccChhhcCcccCceeEEEeccC---ceEEecC-CCceeEEeccCCCc
Confidence 12 23456666554 4566654 35799999998654
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.60 E-value=1e-13 Score=120.88 Aligned_cols=171 Identities=16% Similarity=0.274 Sum_probs=126.5
Q ss_pred cCCCceeEEEEc-------CCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC---Ce
Q 018322 163 AHQGCVNRIRAM-------TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD---EG 232 (358)
Q Consensus 163 ~H~~~V~~i~~~-------p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v 232 (358)
.-.+.|....|- |+. .++|+.+.+.-|+|||.-... .+.-.....|.. ..
T Consensus 102 ~eg~tvydy~wYs~M~s~qP~t-~l~a~ssr~~PIh~wdaftG~-------------------lraSy~~ydh~de~taA 161 (406)
T KOG2919|consen 102 QEGETVYDYCWYSRMKSDQPST-NLFAVSSRDQPIHLWDAFTGK-------------------LRASYRAYDHQDEYTAA 161 (406)
T ss_pred ccCCEEEEEEeeeccccCCCcc-ceeeeccccCceeeeeccccc-------------------cccchhhhhhHHhhhhh
Confidence 345677776664 333 799999999999999997731 122222233544 34
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCC-cccCCCc---cccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDAT-WNVDPNP---FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~-~~~~~~~---~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
.+|+|+|+|. +|++|. ..+|+++|+..++. ..+.... -.+..+.+.+++|+|.....+|.|+...++-||.-..
T Consensus 162 hsL~Fs~DGe-qlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 162 HSLQFSPDGE-QLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred eeEEecCCCC-eEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 6899999998 888776 77999999944343 2211111 2234678999999998887999999988888886554
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC-CCCEEEEeCCCCCCCC
Q 018322 309 GKSALTSFKAHNADVNVISWNRLASCLLASGSD-DGTFSIHDLRLLKVRL 357 (358)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~-Dg~i~iwDlr~~~~~l 357 (358)
..++..+.+|.+.|+.++|.++| +.|.+|+. |-.|-.||+|.-+.||
T Consensus 240 -~~pl~llggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 240 -RRPLQLLGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred -CCceeeecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccchh
Confidence 45788888999999999999999 67777764 7799999999988775
No 173
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.2e-13 Score=134.70 Aligned_cols=152 Identities=18% Similarity=0.247 Sum_probs=110.9
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.++|.++.|+|++ .+||+.+-||+|+||++........-.. ..+...+. ....+.-++|+
T Consensus 132 ~~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~------------v~k~n~~~-~s~i~~~~aW~ 197 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTG------------VDKDNEFI-LSRICTRLAWH 197 (933)
T ss_pred eeecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhccc------------CCcccccc-ccceeeeeeec
Confidence 5677999999999999999 8999999999999999987322111000 11111111 13467789999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|.+. .|+..+.|+.|.+|+......... .....+.+.+.+++|+|.|. +||+++.+|.|.|||..+.. .+.
T Consensus 198 Pk~g-~la~~~~d~~Vkvy~r~~we~~f~--Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t~~-----~~~ 268 (933)
T KOG1274|consen 198 PKGG-TLAVPPVDNTVKVYSRKGWELQFK--LRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDTHE-----RHE 268 (933)
T ss_pred CCCC-eEEeeccCCeEEEEccCCceehee--ecccccccceEEEEEcCCCc-EEeeeccCCcEEEEecccch-----hcc
Confidence 9985 788888899999999866332211 11122445599999999999 99999999999999998721 133
Q ss_pred CCCCeEEEEEeCCCC
Q 018322 319 HNADVNVISWNRLAS 333 (358)
Q Consensus 319 h~~~V~~i~~~p~~~ 333 (358)
....|.+++|.|+..
T Consensus 269 ~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 269 FKRAVCCEAWKPNAN 283 (933)
T ss_pred ccceeEEEecCCCCC
Confidence 456799999999883
No 174
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=7.8e-14 Score=126.66 Aligned_cols=166 Identities=17% Similarity=0.262 Sum_probs=125.1
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC-CeEEEEeCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAIDWNP 239 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~ 239 (358)
.+...|.|..+.|+.++ ..|..++.+|.|.+||++. ...+..+....+ .+++++.++
T Consensus 340 s~KieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~---------------------~~~~~rf~D~G~v~gts~~~S~ 397 (514)
T KOG2055|consen 340 SFKIEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQ---------------------NSCLHRFVDDGSVHGTSLCISL 397 (514)
T ss_pred eeeeccEEeeEEEecCC-cEEEEEcCCceEEEEecCC---------------------cceEEEEeecCccceeeeeecC
Confidence 34457999999999888 5666667789999999998 355556654333 567888889
Q ss_pred CCCCeEEEEeCCCcEEEEecCCC--CCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC--CCcEEEEECCCCCCeeEE
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASD--ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV--DGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~--Dg~I~iwD~r~~~~~~~~ 315 (358)
++. +||+|+..|.|.|||.++- .....+...+..-+..|++++|+++.+ +||.||. ...+|+-.+.+. .....
T Consensus 398 ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~-TVFsN 474 (514)
T KOG2055|consen 398 NGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSC-TVFSN 474 (514)
T ss_pred CCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccce-eeecc
Confidence 998 9999999999999997542 111222345556678999999999999 8888875 678898887652 11111
Q ss_pred E---ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 316 F---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 316 ~---~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+ ...-+.|+|++|+|.+ .+||.|..+|.+.+|.|..
T Consensus 475 fP~~n~~vg~vtc~aFSP~s-G~lAvGNe~grv~l~kL~h 513 (514)
T KOG2055|consen 475 FPTSNTKVGHVTCMAFSPNS-GYLAVGNEAGRVHLFKLHH 513 (514)
T ss_pred CCCCCCcccceEEEEecCCC-ceEEeecCCCceeeEeecc
Confidence 2 1223468999999998 8999999999999998863
No 175
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.58 E-value=3.7e-13 Score=123.53 Aligned_cols=159 Identities=14% Similarity=0.219 Sum_probs=130.0
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
....++|....+.++..|+. .+++|++.|+.|+||+ .. ++..+. --..++.|++|
T Consensus 361 ~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~-~~----------------------k~~wt~-~~~d~~~~~~f 415 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN-DH----------------------KLEWTK-IIEDPAECADF 415 (626)
T ss_pred eEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc-CC----------------------ceeEEE-EecCceeEeec
Confidence 35677999999999999998 7899999999999999 22 343332 23468899999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF- 316 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~- 316 (358)
+|.+ .+|.|...|...+.|..+ ...+ .+...+.+++.++|+|+|. +||.|+.|+.|+||-+.........+
T Consensus 416 hpsg--~va~Gt~~G~w~V~d~e~-~~lv----~~~~d~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 416 HPSG--VVAVGTATGRWFVLDTET-QDLV----TIHTDNEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred cCcc--eEEEeeccceEEEEeccc-ceeE----EEEecCCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEee
Confidence 9998 899999999999999976 2211 2222378999999999999 99999999999999988755544444
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+.|.++|+.+.|++++ .+|.+-+-|-.|-.|..
T Consensus 488 k~~gs~ithLDwS~Ds-~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 488 KCSGSPITHLDWSSDS-QFLVSNSGDYEILYWKP 520 (626)
T ss_pred eecCceeEEeeecCCC-ceEEeccCceEEEEEcc
Confidence 5566899999999999 99999999999999943
No 176
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.57 E-value=1.2e-12 Score=118.96 Aligned_cols=162 Identities=11% Similarity=0.085 Sum_probs=108.8
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCC-cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
+...+..+.|+|++ .++++++.++ .+++||... ......+.. .....+++|++++.
T Consensus 113 ~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~---------------------~~~~~~~~~-~~~~~~~~~s~dg~ 169 (300)
T TIGR03866 113 VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKT---------------------YEIVDNVLV-DQRPRFAEFTADGK 169 (300)
T ss_pred CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCC---------------------CeEEEEEEc-CCCccEEEECCCCC
Confidence 33457889999999 6777777664 567788765 122222211 22456799999997
Q ss_pred CeE-EEEeCCCcEEEEecCCCCCcccCCCcccc---C--CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 243 GRL-VTGDCNSCIYLWEPASDATWNVDPNPFIG---H--SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 243 ~~l-~sgs~dg~I~lwd~~~~~~~~~~~~~~~~---h--~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
+| +++..++.|++||+.+...... ..+.. + ......++|+|++..++++.+.++.|.+||+++. .....+
T Consensus 170 -~l~~~~~~~~~v~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~~~~ 245 (300)
T TIGR03866 170 -ELWVSSEIGGTVSVIDVATRKVIKK--ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-EVLDYL 245 (300)
T ss_pred -EEEEEcCCCCEEEEEEcCcceeeee--eeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEE
Confidence 66 4555699999999987432110 01110 1 1123568899999855666667788999999874 333333
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEE-eCCCCEEEEeCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASG-SDDGTFSIHDLRLLK 354 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasg-s~Dg~i~iwDlr~~~ 354 (358)
.+...+.+++|+|++ .+|+++ +.+|.|++||+++++
T Consensus 246 -~~~~~~~~~~~~~~g-~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 246 -LVGQRVWQLAFTPDE-KYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred -EeCCCcceEEECCCC-CEEEEEcCCCCeEEEEECCCCc
Confidence 345579999999999 666654 568999999999876
No 177
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.57 E-value=4.2e-13 Score=115.77 Aligned_cols=175 Identities=17% Similarity=0.147 Sum_probs=131.1
Q ss_pred CceeEEEEcC---CCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 166 GCVNRIRAMT---QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 166 ~~V~~i~~~p---~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
..++.++|+. ++...++-+-..|.|.+|.......+. ...++....-......+++|++.+.
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~---------------~L~~ls~~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV---------------HLRGLSSKKISVVEALSLDISTSGT 134 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeee---------------eecccchhhhhheeeeEEEeeccCc
Confidence 5566666653 233366777788999999876632211 1122222211222466899999998
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE-EecCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS-FKAHNA 321 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~-~~~h~~ 321 (358)
.++++..+|.+.+-+..... ....+..+.|.-.+.-..|+..+++++.+|++|+.+..||+|.++..+.+ .+.|..
T Consensus 135 -~i~vs~s~G~~~~v~~t~~~--le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 135 -KIFVSDSRGSISGVYETEMV--LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred -eEEEEcCCCcEEEEecceee--eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 79999999999965554321 21235678899999999999999999999999999999999976666655 478999
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRLV 358 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l~ 358 (358)
.|.+|.-+|..+.+|+||+.|..|++||.|+..+||.
T Consensus 212 GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~ 248 (339)
T KOG0280|consen 212 GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF 248 (339)
T ss_pred ceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence 9999999998779999999999999999999988873
No 178
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.6e-13 Score=118.25 Aligned_cols=165 Identities=17% Similarity=0.211 Sum_probs=120.4
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc-ccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN-ALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
...-+..+.+|+| +++|+++-.-.|++|.+--... .+ .....++.+.||+..|.+++|+++..
T Consensus 228 q~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~f--------------qev~rvf~LkGH~saV~~~aFsn~S~- 291 (420)
T KOG2096|consen 228 QSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTF--------------QEVKRVFSLKGHQSAVLAAAFSNSST- 291 (420)
T ss_pred cccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcch--------------hhhhhhheeccchhheeeeeeCCCcc-
Confidence 3445567889999 8999999999999998743110 00 12456778999999999999999998
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccC---C----CccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVD---P----NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~---~----~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
+++|.+.||+++|||+.-.-..... + .++..-.+.-..+..+|.+. .|| .+....|+++..+.++..-..-
T Consensus 292 r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA-~s~gs~l~~~~se~g~~~~~~e 369 (420)
T KOG2096|consen 292 RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLA-VSFGSDLKVFASEDGKDYPELE 369 (420)
T ss_pred eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEE-eecCCceEEEEcccCccchhHH
Confidence 9999999999999998542110000 1 12222334445899999998 554 4456789999999865322223
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
..|...|.+|+|+++| .+++|+|+ ..++++-
T Consensus 370 ~~h~~~Is~is~~~~g-~~~atcGd-r~vrv~~ 400 (420)
T KOG2096|consen 370 DIHSTTISSISYSSDG-KYIATCGD-RYVRVIR 400 (420)
T ss_pred HhhcCceeeEEecCCC-cEEeeecc-eeeeeec
Confidence 7899999999999999 99999874 6677654
No 179
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.56 E-value=1.3e-12 Score=118.73 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=111.0
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
..+..+.|+|++..++++++.++.|++||+.. ......+..+. .+..++|+|++. .+
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~-~~~~~~~~~~g~-~l 87 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT---------------------GEVIGTLPSGP-DPELFALHPNGK-IL 87 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCC---------------------CcEEEeccCCC-CccEEEECCCCC-EE
Confidence 44778999999855667888899999999876 23333344333 346789999987 55
Q ss_pred E-EEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC-cEEEEECCCCCCeeEEEecCCCCe
Q 018322 246 V-TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG-HIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 246 ~-sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg-~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
+ +++.++.|++||+.+... . ..+. +...+.+++|+|++. ++++++.++ .+.+||.++. ....... ....+
T Consensus 88 ~~~~~~~~~l~~~d~~~~~~-~---~~~~-~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~-~~~~~~~-~~~~~ 159 (300)
T TIGR03866 88 YIANEDDNLVTVIDIETRKV-L---AEIP-VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTY-EIVDNVL-VDQRP 159 (300)
T ss_pred EEEcCCCCeEEEEECCCCeE-E---eEee-CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCC-eEEEEEE-cCCCc
Confidence 4 556689999999976322 1 2222 233468899999998 788777765 5778898874 3333332 33456
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+++|+|++..+++++..++.|.+||+++.+
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 7899999994344566679999999998764
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.56 E-value=1.9e-12 Score=121.25 Aligned_cols=170 Identities=31% Similarity=0.488 Sum_probs=135.6
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeC-CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWAD-TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
........|...|+.+.|+|.+ ..+++++. ++.+++|++.. ...+..+.+|...+.+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRT---------------------GKPLSTLAGHTDPVSS 203 (466)
T ss_pred eEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCC---------------------CceEEeeccCCCceEE
Confidence 4446778899999999999999 47777775 99999999986 4566778889999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCC-ccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPN-PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~-~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
++|+|.+...+++++.|+.|++||... +... . .+.+|...+ -..|+|++. ++++++.|+.+++|+++......
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~---~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~ 277 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLST-GKLL---RSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLL 277 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCC-CcEE---eeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEE
Confidence 999988862444558999999998874 2222 2 567777775 348999995 88899999999999999755434
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+..|...|.++.|+|.+ ..+++++.|+.+++||+++..
T Consensus 278 ~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 278 RTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred EEEecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCc
Confidence 4446788999999999977 666668888999999988764
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.1e-13 Score=116.38 Aligned_cols=170 Identities=18% Similarity=0.218 Sum_probs=125.9
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 246 (358)
.|.+-+++|.+ ++|+.|+.+|+|.++.+.......... ....++..+.+|.++++.++|.. . +|+
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~-----------~gk~~iv~eqahdgpiy~~~f~d--~-~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEP-----------PGKLKIVPEQAHDGPIYYLAFHD--D-FLL 76 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCC-----------CCCcceeeccccCCCeeeeeeeh--h-hee
Confidence 45666788988 799999999999999998743322211 12456677799999999999983 2 788
Q ss_pred EEeCCCcEEEEecCCCCCcccC----CCccccCC-----CcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 247 TGDCNSCIYLWEPASDATWNVD----PNPFIGHS-----ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~----~~~~~~h~-----~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
+|+ ||.|+-|..+........ .....-|. ..|+++...|.++.+|. ++.|+.++-||+.++ .....++
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G-~i~r~~r 153 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDG-RIQREYR 153 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCC-EEEEEEc
Confidence 887 699999987653220000 01111122 46889999999885555 457999999999996 4667889
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+|..-|.++.-.... .-++||+.||+++|||+++.+.
T Consensus 154 GHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred CCcceeeeeeecccC-cceeecCCCccEEEEeccccce
Confidence 999999999873333 4789999999999999998764
No 182
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.54 E-value=2.7e-13 Score=128.60 Aligned_cols=173 Identities=17% Similarity=0.289 Sum_probs=130.2
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.+..|.-.|+++.|+|++ ++|++.+.|.++.+|........ .......+.|+.-|++.+|+|
T Consensus 567 ~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~-----------------e~~fa~~k~HtRIIWdcsW~p 628 (764)
T KOG1063|consen 567 ELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKD-----------------EFRFACLKAHTRIIWDCSWSP 628 (764)
T ss_pred eecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccch-----------------hhhhccccccceEEEEcccCc
Confidence 577899999999999999 79999999999999998652211 011223678999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC----CEEEEEECCCcEEEEECCC-CCC---
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP----DVFASCSVDGHIAIWDTRV-GKS--- 311 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~----~~las~s~Dg~I~iwD~r~-~~~--- 311 (358)
++. +|+|+|.|++|.+|.................+..+|+.++|.|.-. .+++.|-..|.|.||.... .+.
T Consensus 629 de~-~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~ 707 (764)
T KOG1063|consen 629 DEK-YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTV 707 (764)
T ss_pred ccc-eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccc
Confidence 998 8999999999999998764211111113455789999999987543 3889999999999998541 100
Q ss_pred ----e---eEEEecCCCCeEEEEEeCCC---------CcEEEEEeCCCCEEEEeCC
Q 018322 312 ----A---LTSFKAHNADVNVISWNRLA---------SCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 312 ----~---~~~~~~h~~~V~~i~~~p~~---------~~~lasgs~Dg~i~iwDlr 351 (358)
. .....+|.+.|+.+.|.|.. -..|++|++|..++|+++.
T Consensus 708 ~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 708 GTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 0 11124577789999999752 1357999999999999864
No 183
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=8.4e-13 Score=112.71 Aligned_cols=149 Identities=16% Similarity=0.369 Sum_probs=101.9
Q ss_pred EEEEcCCCCcEEEEEeC---------CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC-CCCCeEEEEeCC
Q 018322 170 RIRAMTQNPHICASWAD---------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNP 239 (358)
Q Consensus 170 ~i~~~p~~~~~lat~s~---------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~ 239 (358)
.+.|+|+|..+++.... -|...||.++. ...+...+.- ..++|.+++|+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~--------------------~~~~~~~i~l~~~~~I~~~~WsP 69 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE--------------------KNIPVESIELKKEGPIHDVAWSP 69 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEec--------------------CCCccceeeccCCCceEEEEECc
Confidence 46788888655555441 23455666644 1234444433 344799999999
Q ss_pred CCCCeEEE--EeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC---CCcEEEEECCCCCCeeE
Q 018322 240 ITTGRLVT--GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV---DGHIAIWDTRVGKSALT 314 (358)
Q Consensus 240 ~~~~~l~s--gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~---Dg~I~iwD~r~~~~~~~ 314 (358)
++. .||+ |...+.|.+||++. .. .+.-+...++.|.|+|.|+ ++++++. .|.|.+||++.. ..+.
T Consensus 70 ~g~-~favi~g~~~~~v~lyd~~~--~~-----i~~~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~-~~i~ 139 (194)
T PF08662_consen 70 NGN-EFAVIYGSMPAKVTLYDVKG--KK-----IFSFGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKK-KKIS 139 (194)
T ss_pred CCC-EEEEEEccCCcccEEEcCcc--cE-----eEeecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCC-EEee
Confidence 998 6544 45678999999962 21 1222456788999999999 7777764 467999999963 3444
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeC------CCCEEEEeCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSD------DGTFSIHDLR 351 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~------Dg~i~iwDlr 351 (358)
... |. .++.++|+|+| ++|+++.. |+.++||+..
T Consensus 140 ~~~-~~-~~t~~~WsPdG-r~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 140 TFE-HS-DATDVEWSPDG-RYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccc-cC-cEEEEEEcCCC-CEEEEEEeccceeccccEEEEEec
Confidence 432 33 47899999999 77777753 7889999974
No 184
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.1e-13 Score=129.32 Aligned_cols=157 Identities=19% Similarity=0.294 Sum_probs=125.0
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.-.|.|.++.|+|..+.+|++ +. ..|+|||+..+ ..+..+......|..++.+|.|.
T Consensus 564 kskG~vq~v~FHPs~p~lfVa-Tq-~~vRiYdL~kq---------------------elvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 564 KSKGLVQRVKFHPSKPYLFVA-TQ-RSVRIYDLSKQ---------------------ELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred hcCCceeEEEecCCCceEEEE-ec-cceEEEehhHH---------------------HHHHHHhcCCeeeeeeeecCCCC
Confidence 346889999999999655544 33 57999999872 33334444455788999999998
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC-----C---CeeE
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-----K---SALT 314 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-----~---~~~~ 314 (358)
.|+.|+.|+.++.+|+.-..+.. +.+..|...|++|+||+.-+ +|++|+.||++.||--+-- . -++.
T Consensus 621 -nli~gs~d~k~~WfDldlsskPy---k~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK 695 (733)
T KOG0650|consen 621 -NLILGSYDKKMCWFDLDLSSKPY---KTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLK 695 (733)
T ss_pred -eEEEecCCCeeEEEEcccCcchh---HHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeee
Confidence 88999999999999997644433 67778999999999999999 9999999999999954321 1 1455
Q ss_pred EEecCCCC----eEEEEEeCCCCcEEEEEeCCCCEEEE
Q 018322 315 SFKAHNAD----VNVISWNRLASCLLASGSDDGTFSIH 348 (358)
Q Consensus 315 ~~~~h~~~----V~~i~~~p~~~~~lasgs~Dg~i~iw 348 (358)
.+.+|... |..+.|+|.. .+|+|++.||+|++|
T Consensus 696 ~L~gH~~~~~~gVLd~~wHP~q-pWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 696 RLRGHEKTNDLGVLDTIWHPRQ-PWLFSAGADGTIRLF 732 (733)
T ss_pred eccCceeecccceEeecccCCC-ceEEecCCCceEEee
Confidence 66788665 8888999999 889999999999998
No 185
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.1e-13 Score=126.25 Aligned_cols=191 Identities=16% Similarity=0.154 Sum_probs=139.8
Q ss_pred CCeEEEEEecCCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCe
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (358)
.+.+.....+|.+.|.+++|.|.. ..+++||+.|..|++||+..........+ ...+...+..|...|
T Consensus 82 ~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~-----------~~~~~~~~~cht~rV 150 (758)
T KOG1310|consen 82 YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG-----------MEETTRCWSCHTDRV 150 (758)
T ss_pred cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC-----------ccchhhhhhhhhhhh
Confidence 344556677999999999999954 57999999999999999986322221111 245566788899999
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccC------CCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD------PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~------~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
.-|+-.|.+++.+.+++.||+|+-+|++.+..+... ...+...--...++..+|..+++||.|+.|-..++||.
T Consensus 151 Kria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 151 KRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred hheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 999999999889999999999999999985432211 11222233456789999999999999999999999996
Q ss_pred CCCCC-----------------eeEEE-ecCC-----------CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 307 RVGKS-----------------ALTSF-KAHN-----------ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 307 r~~~~-----------------~~~~~-~~h~-----------~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
|...+ ++..+ .+|- ..++-+.|+|+|..+|++-+.+ .|+++|+...+.+
T Consensus 231 Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 231 RRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDKSP 308 (758)
T ss_pred hhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCCCCc
Confidence 53111 12222 1221 1246678999997788776653 7999999887765
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.52 E-value=1.2e-14 Score=140.05 Aligned_cols=164 Identities=21% Similarity=0.324 Sum_probs=136.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
.++.+|...|+|+.|...+ .+++||++|..|+||.+.+ ..++..+.||.+.++.++.+
T Consensus 184 krLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et---------------------~~~lAs~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMET---------------------ARCLASCRGHSGDITDLAVS 241 (1113)
T ss_pred HHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccc---------------------hhhhccCCCCccccchhccc
Confidence 3456899999999999999 8999999999999999766 57788899999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC-CC-------
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV-GK------- 310 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~-~~------- 310 (358)
..+. +++++++|..|++|-+..+ ..+ ..+.+|++.|++|+|+|-. +.+.||++++||.|- ..
T Consensus 242 ~~n~-~iaaaS~D~vIrvWrl~~~-~pv---svLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 242 SNNT-MIAAASNDKVIRVWRLPDG-APV---SVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred hhhh-hhhhcccCceEEEEecCCC-chH---HHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCC
Confidence 9887 9999999999999999874 333 5688999999999999854 778899999999871 00
Q ss_pred -------------------------------------------------C-------------------------eeEEE
Q 018322 311 -------------------------------------------------S-------------------------ALTSF 316 (358)
Q Consensus 311 -------------------------------------------------~-------------------------~~~~~ 316 (358)
. ..+.+
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l 391 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL 391 (1113)
T ss_pred CcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh
Confidence 0 00112
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+|...+..+.++|.++.+..+++.||...|||+..+.
T Consensus 392 ~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 392 MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred cccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 34666788899999998888899999999999997654
No 187
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.5e-12 Score=117.01 Aligned_cols=162 Identities=15% Similarity=0.171 Sum_probs=125.7
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC-CCeEEEEeCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-DEGYAIDWNPIT 241 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~ 241 (358)
--..+|.+.+|.|+|...+++++.....+.||+... ...++....++. ..+..+..++++
T Consensus 255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a-------------------k~~k~~~~~g~e~~~~e~FeVShd~ 315 (514)
T KOG2055|consen 255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA-------------------KVTKLKPPYGVEEKSMERFEVSHDS 315 (514)
T ss_pred eccCccceeeecCCCceEEEecccceEEEEeecccc-------------------ccccccCCCCcccchhheeEecCCC
Confidence 346899999999999668999999999999999762 123333344554 356678889999
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
+ +|+..+..|.|+|.-..+ +.++ ..+. -.+.|.+++|+.++. .|++++.+|.|.+||++.. .++.++...++
T Consensus 316 ~-fia~~G~~G~I~lLhakT-~eli---~s~K-ieG~v~~~~fsSdsk-~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~ 387 (514)
T KOG2055|consen 316 N-FIAIAGNNGHIHLLHAKT-KELI---TSFK-IEGVVSDFTFSSDSK-ELLASGGTGEVYVWNLRQN-SCLHRFVDDGS 387 (514)
T ss_pred C-eEEEcccCceEEeehhhh-hhhh---heee-eccEEeeEEEecCCc-EEEEEcCCceEEEEecCCc-ceEEEEeecCc
Confidence 8 999999999999988766 3332 2332 357899999999998 7777788899999999985 67777754333
Q ss_pred -CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 322 -DVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 322 -~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.=++++.++++ .+||+|+..|.|.|||..+
T Consensus 388 v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 388 VHGTSLCISLNG-SYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred cceeeeeecCCC-ceEEeccCcceEEEeccch
Confidence 23567778889 8999999999999999653
No 188
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.49 E-value=1.6e-12 Score=125.69 Aligned_cols=173 Identities=18% Similarity=0.239 Sum_probs=143.8
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
..++.+++..+...|+++.-+|-= .++|.|..+|+|.|+++.. .+.+.+|+...+.|+
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~---------------------dkil~sFk~d~g~Vt 248 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKF---------------------DKILMSFKQDWGRVT 248 (910)
T ss_pred cCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEccc---------------------CcEEEEEEcccccee
Confidence 556778888999999999999987 7999999999999999987 567777876668999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC--C
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--S 311 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~ 311 (358)
+++|..+|...|++|+..|.+.+||+....... .....|.+.|..+.|.|..+ ++++.+.|.++++|=..++. .
T Consensus 249 slSFrtDG~p~las~~~~G~m~~wDLe~kkl~~---v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~p 324 (910)
T KOG1539|consen 249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN---VTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVP 324 (910)
T ss_pred EEEeccCCCeeEEeccCCceEEEEEcCCCeeee---eeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcc
Confidence 999999998889999999999999997643322 33446889999999999988 99999999999998554422 2
Q ss_pred -eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 312 -ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 312 -~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+..-.+|..+..+|.|.-...+.+.+++.|++++.+++.+
T Consensus 325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~ 366 (910)
T KOG1539|consen 325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVIS 366 (910)
T ss_pred hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhH
Confidence 33444789999999999854449999999999999888764
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=4.6e-13 Score=120.59 Aligned_cols=158 Identities=20% Similarity=0.223 Sum_probs=125.9
Q ss_pred eEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEE
Q 018322 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (358)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 248 (358)
.+++|++++ ..+|+|+.||++|||++.. ...+.....|..+|.+|+|+|++. +|++-
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps---------------------~~t~l~e~~~~~eV~DL~FS~dgk-~lasi 204 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPS---------------------MLTILEEIAHHAEVKDLDFSPDGK-FLASI 204 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCc---------------------chhhhhhHhhcCccccceeCCCCc-EEEEe
Confidence 678999998 7999999999999999876 355666778899999999999998 99999
Q ss_pred eCCCcEEEEecCCCCCcccC-----------------C---------------------------------CccccCCCc
Q 018322 249 DCNSCIYLWEPASDATWNVD-----------------P---------------------------------NPFIGHSAS 278 (358)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~-----------------~---------------------------------~~~~~h~~~ 278 (358)
+.| ..+||+.+++..+... . +........
T Consensus 205 g~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s 283 (398)
T KOG0771|consen 205 GAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS 283 (398)
T ss_pred cCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc
Confidence 989 8999999875111000 0 000011237
Q ss_pred EEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
|.+++.+++|+ ++|.|+.||.|.|++....+.....-++|...|+.+.|+|+. +.+++-+.+.+..|.-+.-
T Consensus 284 iSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 284 ISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ceeEEEcCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEee
Confidence 88999999999 999999999999999987533333348899999999999999 8899888888888876653
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.46 E-value=3.8e-13 Score=124.31 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=114.5
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
+....+|.+.|.+-||+|+| .-|.|.++||.|+||.....+ ..++.....+|+|++|
T Consensus 97 E~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGML----------------------RStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGML----------------------RSTVVQNEESIRCARW 153 (737)
T ss_pred hhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccchH----------------------HHHHhhcCceeEEEEE
Confidence 34455799999999999999 678899999999999976632 2234445679999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
.|+....+.+.+ +.+.+=-+....+ +-....|.+-|.++.|++... ++++|+.|-..+|||-.. .++..-.
T Consensus 154 ~p~S~~vl~c~g--~h~~IKpL~~n~k----~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~G--~~Lf~S~ 224 (737)
T KOG1524|consen 154 APNSNSIVFCQG--GHISIKPLAANSK----IIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQG--ANLFTSA 224 (737)
T ss_pred CCCCCceEEecC--CeEEEeecccccc----eeEEeccCcEEEEeecCcccc-ceeecCCceeEEeecccC--cccccCC
Confidence 999985666554 4555544433222 235678999999999999998 999999999999999864 4555667
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeC
Q 018322 318 AHNADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~ 341 (358)
+|..+|++++|+|+. +++.||.
T Consensus 225 ~~ey~ITSva~npd~--~~~v~S~ 246 (737)
T KOG1524|consen 225 AEEYAITSVAFNPEK--DYLLWSY 246 (737)
T ss_pred hhccceeeeeecccc--ceeeeee
Confidence 788888888888874 5666654
No 191
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=1.9e-13 Score=124.33 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=133.2
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.-...|..+.|-... .++|+ .....++|||-.. ..+..+..|. ++..|.|-|..-
T Consensus 168 ~v~Etv~Dv~~LHne-q~~AV-AQK~y~yvYD~~G----------------------tElHClk~~~-~v~rLeFLPyHf 222 (545)
T KOG1272|consen 168 NVMETVRDVTFLHNE-QFFAV-AQKKYVYVYDNNG----------------------TELHCLKRHI-RVARLEFLPYHF 222 (545)
T ss_pred ehhhhhhhhhhhcch-HHHHh-hhhceEEEecCCC----------------------cEEeehhhcC-chhhhcccchhh
Confidence 345778888888766 67776 4557899999654 4555565554 788999999987
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
+|++++..|.++.-|+..+ ..+ ..+....+.+..++-+|-+. ++-+|...|+|.+|...+ ..++..+..|.++
T Consensus 223 -LL~~~~~~G~L~Y~DVS~G-klV---a~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~s-kePLvKiLcH~g~ 295 (545)
T KOG1272|consen 223 -LLVAASEAGFLKYQDVSTG-KLV---ASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNS-KEPLVKILCHRGP 295 (545)
T ss_pred -eeeecccCCceEEEeechh-hhh---HHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCC-cchHHHHHhcCCC
Confidence 8999999999999999884 433 34555567788888999888 999999999999999887 4677788899999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
|++|++.++| +++||.|.|..++|||+|++.++
T Consensus 296 V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 296 VSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred cceEEECCCC-cEEeecccccceeEeeecccccc
Confidence 9999999999 99999999999999999998765
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=6.4e-12 Score=124.39 Aligned_cols=166 Identities=23% Similarity=0.243 Sum_probs=126.8
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCC--eEEEEeCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE--GYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~s~~~ 241 (358)
-...|+.+.....+.+++|.|-.||.|++||.+... ....+.....|+.. |..+.+.+.|
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~------------------~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP------------------PDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCC------------------ccccceeecccCCcccceeEEeecCC
Confidence 445666666655445899999999999999998732 13466778889886 9999999998
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccC---CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe-
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH---SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK- 317 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h---~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~- 317 (358)
-+.|++|+.+|.|.+||++...... ......| .+.++++..|+..+ ++|+|+. +.|+||++... .+..++
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~--~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~--~l~~~k~ 1342 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKET--FLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGE--QLNIIKY 1342 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccc--cceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChh--hhccccc
Confidence 8789999999999999999742211 1222223 23599999999998 9999998 99999998752 222221
Q ss_pred ------cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 318 ------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 318 ------~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.....+.|++|+|.. -+||.|+.|.+|.||...+.+
T Consensus 1343 n~~F~~q~~gs~scL~FHP~~-~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1343 NPGFMGQRIGSVSCLAFHPHR-LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CcccccCcCCCcceeeecchh-HhhhhccCCceEEEeecCCcC
Confidence 123457999999999 899999999999999877654
No 193
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.41 E-value=8.7e-11 Score=109.89 Aligned_cols=162 Identities=29% Similarity=0.492 Sum_probs=128.6
Q ss_pred CceeEEEE-cCCCCcEEEEEeC-CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 166 GCVNRIRA-MTQNPHICASWAD-TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 166 ~~V~~i~~-~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
..+..+.+ .+++..+++..+. ++.+++|++.. .......+..|...+.+++|+|.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~- 168 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST--------------------PGKLIRTLEGHSESVTSLAFSPDGK- 168 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecC--------------------CCeEEEEEecCcccEEEEEECCCCC-
Confidence 47777777 7777435555444 99999999986 1355667889999999999999998
Q ss_pred eEEEEeC-CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE-EEecCCC
Q 018322 244 RLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT-SFKAHNA 321 (358)
Q Consensus 244 ~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~-~~~~h~~ 321 (358)
.+++++. ++.+++|++... .. ...+.+|...|.+++|+|.+..++++++.|+.|++||.+.+ ..+. .+..|..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~ 243 (466)
T COG2319 169 LLASGSSLDGTIKLWDLRTG-KP---LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSD 243 (466)
T ss_pred EEEecCCCCCceEEEEcCCC-ce---EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCc
Confidence 8888885 999999999762 22 24566699999999999988745666699999999998853 4554 5777887
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+ ...|+|++ .++++++.|+.+++|+++....
T Consensus 244 ~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 244 SV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred ce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc
Confidence 75 44899999 8888999999999999987653
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.41 E-value=5.7e-12 Score=119.29 Aligned_cols=188 Identities=15% Similarity=0.168 Sum_probs=118.9
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc------------cccccccc-ccCCCCCCCCCCC-
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN------------ALAESETI-VGQGAPQVSNQSP- 221 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~------------~~~~~~~~-~~~~~~~~~~~~~- 221 (358)
.+...+.+|...|+|++|+.+| ..+|+|+.|..|.||.-.-..- .+.+.... .....+.-.-..+
T Consensus 44 ~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~ 122 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE 122 (1081)
T ss_pred ccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChh
Confidence 3446778999999999999999 7999999999999998654211 00000000 0000000000000
Q ss_pred cEEEcCC--CCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC------------
Q 018322 222 LVKFGGH--KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT------------ 287 (358)
Q Consensus 222 ~~~~~~h--~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~------------ 287 (358)
......| ...+.+.+|..+|. +|+.|-.+|+|.+-+-....+.. +..--|..++|.+|+|+|.
T Consensus 123 qK~V~K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~--I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~ 199 (1081)
T KOG1538|consen 123 QKSVSKHKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVK--IERPGGSNSPIWSICWNPSSGEGRNDILAVA 199 (1081)
T ss_pred hhhHHhhhhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceE--EeCCCCCCCCceEEEecCCCCCCccceEEEE
Confidence 0011122 24688999999998 99999999999987543321111 1222234455555555553
Q ss_pred ----------------------------------CCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCC
Q 018322 288 ----------------------------------EPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLAS 333 (358)
Q Consensus 288 ----------------------------------~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~ 333 (358)
|. +++.|+.|+.+++| +|.+ -.+-++.....+|+.++..|++
T Consensus 200 DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~f-TR~G-vrLGTvg~~D~WIWtV~~~PNs- 275 (1081)
T KOG1538|consen 200 DWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLF-TRDG-VRLGTVGEQDSWIWTVQAKPNS- 275 (1081)
T ss_pred eccceeEEEEecceeecccccCCCCchhheeccCCc-EEEEccCCCceEEE-eecC-eEEeeccccceeEEEEEEccCC-
Confidence 44 56666666666666 3332 2344454567789999999999
Q ss_pred cEEEEEeCCCCEEEEeCC
Q 018322 334 CLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 334 ~~lasgs~Dg~i~iwDlr 351 (358)
..++.|+.||+|..|++-
T Consensus 276 Q~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ceEEEEEccCeeehhhhH
Confidence 999999999999999874
No 195
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.40 E-value=1e-10 Score=102.25 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=114.0
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC--CCeEEEEeCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK--DEGYAIDWNPI 240 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~s~~ 240 (358)
...++|..|++.++. +++. ..++|+||.+.... +.+..+.... ....+++-+..
T Consensus 92 ~f~~~I~~V~l~r~r--iVvv--l~~~I~VytF~~n~--------------------k~l~~~et~~NPkGlC~~~~~~~ 147 (346)
T KOG2111|consen 92 SFNSEIKAVKLRRDR--IVVV--LENKIYVYTFPDNP--------------------KLLHVIETRSNPKGLCSLCPTSN 147 (346)
T ss_pred EeccceeeEEEcCCe--EEEE--ecCeEEEEEcCCCh--------------------hheeeeecccCCCceEeecCCCC
Confidence 357899999999864 3333 34789999998632 2233332221 12222222222
Q ss_pred CCCeEEE-EeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCc-EEEEECCCCCCeeEEEe-
Q 018322 241 TTGRLVT-GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH-IAIWDTRVGKSALTSFK- 317 (358)
Q Consensus 241 ~~~~l~s-gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~-I~iwD~r~~~~~~~~~~- 317 (358)
.. +||- |-.-|.|.|-|+...... ....+..|.+.|.+++.+-+|. ++||+|..|+ |||||.+++ ..+..++
T Consensus 148 k~-~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g-~~l~E~RR 222 (346)
T KOG2111|consen 148 KS-LLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDG-TLLQELRR 222 (346)
T ss_pred ce-EEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCC-cEeeeeec
Confidence 22 3433 445689999999763221 1356778999999999999998 9999999985 899999996 4666663
Q ss_pred -cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 318 -AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 318 -~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
...+.|.+|+|+|+. .+||.+|+.|+|+||.++-.
T Consensus 223 G~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecC
Confidence 245679999999999 99999999999999999753
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.40 E-value=8.1e-13 Score=124.95 Aligned_cols=147 Identities=20% Similarity=0.450 Sum_probs=120.3
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 246 (358)
.|+.++|-|+|..++..++ ..+.|||.+. +..+.++++|++.|++++|+.+|. ++|
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~nd---------------------G~llqtLKgHKDtVycVAys~dGk-rFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSD---------------------GTLLQPLKGHKDTVYCVAYAKDGK-RFA 69 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCC---------------------cccccccccccceEEEEEEccCCc-eec
Confidence 8999999999976665544 4799999987 677888999999999999999999 999
Q ss_pred EEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEE
Q 018322 247 TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326 (358)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i 326 (358)
||+.|+.|.+|...-.+.. -..|+..|.|+.|+|-.. .++||+-. ..-+|.... +.+.. ......|++.
T Consensus 70 SG~aDK~VI~W~~klEG~L------kYSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~q--K~V~K-~kss~R~~~C 138 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKLEGIL------KYSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQ--KSVSK-HKSSSRIICC 138 (1081)
T ss_pred cCCCceeEEEeccccccee------eeccCCeeeEeecCchHH-Hhhhcchh-hccccChhh--hhHHh-hhhheeEEEe
Confidence 9999999999998654431 234999999999999887 89999863 466787665 22222 2234578999
Q ss_pred EEeCCCCcEEEEEeCCCCEEEEe
Q 018322 327 SWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 327 ~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
+|+.+| .+|+.|-.+|+|.|-+
T Consensus 139 sWtnDG-qylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 139 SWTNDG-QYLALGMFNGTISIRN 160 (1081)
T ss_pred eecCCC-cEEEEeccCceEEeec
Confidence 999999 9999999999998874
No 197
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.1e-11 Score=110.84 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=130.9
Q ss_pred CceeEEEEcCCCCcEEEEEeCC--CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC--CeEEEEeCCC-
Q 018322 166 GCVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYAIDWNPI- 240 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~- 240 (358)
..+..++-++..+.++|+|+.. ..+.|||+......+.... -| ...-+-.- -++++.|-+.
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN-------------vp-nD~L~LrVPvW~tdi~Fl~g~ 214 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN-------------VP-NDRLGLRVPVWITDIRFLEGS 214 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC-------------CC-CccccceeeeeeccceecCCC
Confidence 7788899999999999999999 8899999987422221100 00 00001111 3457778776
Q ss_pred -CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 241 -TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 241 -~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
.. .||++..-+.+++||.+.+.+++ ..|.--..+++++...|.+. ++++|..-|.+..||+|.+......+.+-
T Consensus 215 ~~~-~fat~T~~hqvR~YDt~~qRRPV---~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 215 PNY-KFATITRYHQVRLYDTRHQRRPV---AQFDFLENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred CCc-eEEEEecceeEEEecCcccCcce---eEeccccCcceeeeecCCCc-EEEEecccchhheecccCceeeccccCCc
Confidence 44 89999999999999998755443 44555577899999999998 89999999999999999976555557888
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+.|.+|..+|.+ .+||+||-|..|+|+|+.+
T Consensus 290 tGsirsih~hp~~-~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 290 TGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cCCcceEEEcCCC-ceEEeeccceeEEEeeccc
Confidence 8999999999999 8999999999999999988
No 198
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.38 E-value=1.5e-11 Score=123.49 Aligned_cols=183 Identities=15% Similarity=0.177 Sum_probs=130.6
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
+.++...+..|...|++++.++....+|+|||.||+|++|+......... ......++..-...+.
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~--------------s~rS~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG--------------SARSELTYSPEGSRVE 1102 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc--------------eeeeeEEEeccCCceE
Confidence 45677778889999999999887767999999999999999987432210 1233344444456899
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCC-ccc--CCCccccC-CCcEEE-EEECCCCCC-EEEEEECCCcEEEEECC
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDAT-WNV--DPNPFIGH-SASVED-LQWSPTEPD-VFASCSVDGHIAIWDTR 307 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~-~~~--~~~~~~~h-~~~V~~-v~~sp~~~~-~las~s~Dg~I~iwD~r 307 (358)
++...+.+. .+|.|+.||.|++.++..... ... ..+....+ .+.+.+ -+|...... +++.+..-+.|..||+|
T Consensus 1103 ~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1103 KVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred EEEeccCCC-eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 999999998 999999999999999865211 100 00111111 223333 334333333 88889999999999999
Q ss_pred CCCCeeEEE--ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 308 VGKSALTSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 308 ~~~~~~~~~--~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+. .-+.++ ....+.|++++.+|.+ +++++|..-|.+-+||+|-.
T Consensus 1182 ~~-~~~w~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1182 MR-HDAWRLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hh-hhHHhhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecC
Confidence 84 333333 3334569999999999 89999999999999999853
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=1.7e-10 Score=102.71 Aligned_cols=159 Identities=16% Similarity=0.256 Sum_probs=119.3
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc---CCCCCeEEEEeC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG---GHKDEGYAIDWN 238 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~s 238 (358)
+..+.+|.+|+++.+. +++ +-. ..|+|||++. -+++.++. .+...+.++..+
T Consensus 84 ~~fpt~IL~VrmNr~R--LvV-~Le-e~IyIydI~~---------------------MklLhTI~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 84 IFFPTSILAVRMNRKR--LVV-CLE-ESIYIYDIKD---------------------MKLLHTIETTPPNPKGLCALSPN 138 (391)
T ss_pred EecCCceEEEEEccce--EEE-EEc-ccEEEEeccc---------------------ceeehhhhccCCCccceEeeccC
Confidence 3457789999998754 444 344 3499999987 34444332 344567777777
Q ss_pred CCCCCeEEEE--eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCc-EEEEECCCCCCeeEE
Q 018322 239 PITTGRLVTG--DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH-IAIWDTRVGKSALTS 315 (358)
Q Consensus 239 ~~~~~~l~sg--s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~-I~iwD~r~~~~~~~~ 315 (358)
+.+. +||-- ...|.|.|||..+-.. ...+..|.+.+.+++|+++|. ++||+|..|+ ||||.+..+ +.+..
T Consensus 139 ~~n~-ylAyp~s~t~GdV~l~d~~nl~~----v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G-~kl~e 211 (391)
T KOG2110|consen 139 NANC-YLAYPGSTTSGDVVLFDTINLQP----VNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEG-QKLYE 211 (391)
T ss_pred CCCc-eEEecCCCCCceEEEEEccccee----eeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCc-cEeee
Confidence 7766 66643 2468999999976322 356778999999999999999 9999999885 799999885 46666
Q ss_pred EecC--CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 316 FKAH--NADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 316 ~~~h--~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
++.. ...|.+|+|+|++ .+|++.|..++|+||.|..-
T Consensus 212 FRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred eeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEeccc
Confidence 6432 3468999999999 88988899999999998653
No 200
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=2e-12 Score=118.43 Aligned_cols=176 Identities=23% Similarity=0.319 Sum_probs=141.4
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE-EcCCCCCeEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-FGGHKDEGYAI 235 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l 235 (358)
+...+-+|.|+|+.|.|+..| .++++||+|.+|.+||... ..+... ..||...|+.-
T Consensus 134 l~~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~---------------------~~~~l~f~SGH~~NvfQa 191 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVS---------------------GSPKLSFESGHCNNVFQA 191 (559)
T ss_pred hhhcccCCCCccceeeecccC-ceeeccCccceEEeehhhc---------------------cCcccccccccccchhhh
Confidence 445677899999999999999 7999999999999999987 333333 45788888888
Q ss_pred EeCCCC-CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC--e
Q 018322 236 DWNPIT-TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS--A 312 (358)
Q Consensus 236 ~~s~~~-~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~--~ 312 (358)
.|-|.. ...+++++.||.+++=.+...+. ......+..|.++|.-++.-|..++.|.+|+.|+.+.-+|+|.... .
T Consensus 192 KFiP~s~d~ti~~~s~dgqvr~s~i~~t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 192 KFIPFSGDRTIVTSSRDGQVRVSEILETGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred hccCCCCCcCceeccccCceeeeeeccccc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 888864 22789999999999988765333 2213456679999999999999999999999999999999998532 2
Q ss_pred eEEEecCCC---CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 313 LTSFKAHNA---DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 313 ~~~~~~h~~---~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+....++.. ..+.|+.+|...+.+++|+.|..+++||.|+...
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~ 316 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDK 316 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhh
Confidence 222244444 5789999999978999999999999999998654
No 201
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1e-11 Score=108.25 Aligned_cols=113 Identities=15% Similarity=0.211 Sum_probs=92.1
Q ss_pred eEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 232 v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
..|+.|++-|. +||+|+.+|.|.|||+.+.+. .+.+.+|..+|.+++||++|+ .|+|+|.|..|.+||++.+.
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~i----ar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs- 98 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRI----ARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGS- 98 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccch----hhhhhccccceeEEEecCCCC-EeeeecCCceeEEEeccCCC-
Confidence 67999999998 999999999999999988543 467889999999999999999 99999999999999999964
Q ss_pred eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 312 ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 312 ~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
++..+. ..++|..+.|+|...+..+..-.+..-.+-++..
T Consensus 99 ~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 99 PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 666664 5778999999997645554444444444444443
No 202
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=7.9e-11 Score=104.53 Aligned_cols=170 Identities=19% Similarity=0.284 Sum_probs=116.9
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
+..|.|++|-|.+..-||.|... -|.||......+.-....... .....+....|| .+|++|.|++++. .
T Consensus 140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s-------~~~~qvl~~pgh-~pVtsmqwn~dgt-~ 209 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMS-------THHLQVLQDPGH-NPVTSMQWNEDGT-I 209 (445)
T ss_pred hcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccccc-------ccchhheeCCCC-ceeeEEEEcCCCC-E
Confidence 57899999999887788888875 599999876443221100000 012233445566 5999999999997 8
Q ss_pred EEEEeC-CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 245 LVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 245 l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
|++++. +..|.|||+.++.... +. .-..+.+.-+.|||++. +|.++..|+..++|.......+. ......+.|
T Consensus 210 l~tAS~gsssi~iWdpdtg~~~p--L~--~~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~wt~e-rw~lgsgrv 283 (445)
T KOG2139|consen 210 LVTASFGSSSIMIWDPDTGQKIP--LI--PKGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQSWTKE-RWILGSGRV 283 (445)
T ss_pred EeecccCcceEEEEcCCCCCccc--cc--ccCCCceeeEEEcCCCC-EEEEecccceeeeehhcccceec-ceeccCCce
Confidence 888874 6799999998854422 11 12346788899999999 88889999999999655433222 222234489
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
....|+|.|+.+|++++.. -++|.+..
T Consensus 284 qtacWspcGsfLLf~~sgs--p~lysl~f 310 (445)
T KOG2139|consen 284 QTACWSPCGSFLLFACSGS--PRLYSLTF 310 (445)
T ss_pred eeeeecCCCCEEEEEEcCC--ceEEEEee
Confidence 9999999997777776643 44555443
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.34 E-value=3.6e-12 Score=116.15 Aligned_cols=153 Identities=18% Similarity=0.277 Sum_probs=125.1
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-...|+++.|-|.. .+|++++..|.++.-|++. ++.+..+..-.+.+..++-+|-+.
T Consensus 208 ~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~---------------------GklVa~~~t~~G~~~vm~qNP~Na- 264 (545)
T KOG1272|consen 208 RHIRVARLEFLPYH-FLLVAASEAGFLKYQDVST---------------------GKLVASIRTGAGRTDVMKQNPYNA- 264 (545)
T ss_pred hcCchhhhcccchh-heeeecccCCceEEEeech---------------------hhhhHHHHccCCccchhhcCCccc-
Confidence 35789999999998 8999999999999999987 566666766677888999999987
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.+-+|...|+|.+|....... +..+..|.++|.+|++.++|. ++||.+.|..++|||+|.-. .++++.. ....
T Consensus 265 Vih~GhsnGtVSlWSP~skeP----LvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~-ql~t~~t-p~~a 337 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSKEP----LVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFY-QLHTYRT-PHPA 337 (545)
T ss_pred eEEEcCCCceEEecCCCCcch----HHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeecccc-ccceeec-CCCc
Confidence 999999999999999876333 246778999999999999999 99999999999999999854 4444433 3456
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
+.++++..| +||. |.-..|.||-
T Consensus 338 ~~ls~Sqkg--lLA~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 338 SNLSLSQKG--LLAL-SYGDHVQIWK 360 (545)
T ss_pred ccccccccc--ceee-ecCCeeeeeh
Confidence 788999877 4444 3445788884
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.34 E-value=6.7e-12 Score=116.21 Aligned_cols=141 Identities=20% Similarity=0.372 Sum_probs=112.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
..|+.++.||.+.|.+-.. +.......|.+.+.+-.|+|+|. -|++++.||.|++|.
T Consensus 76 d~~~i~s~DGkf~il~k~~----------------------rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWS 132 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA----------------------RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWS 132 (737)
T ss_pred ceEEEEcCCceEEEecccc----------------------hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEe
Confidence 5788889999999977554 44456778999999999999999 788889999999998
Q ss_pred cCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEE
Q 018322 259 PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLAS 338 (358)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~las 338 (358)
-. +... ..+.....+|.|++|.|+..+++.+.+ +.+.|=-+.. ...+...++|.+-|.++.|++.. .+|+|
T Consensus 133 rs--GMLR---Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s-~lI~s 203 (737)
T KOG1524|consen 133 RS--GMLR---STVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQS-NIIAS 203 (737)
T ss_pred cc--chHH---HHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccc-ccceeEEeccCcEEEEeecCccc-cceee
Confidence 53 2221 334456678999999999986776655 4555555554 34667889999999999999999 99999
Q ss_pred EeCCCCEEEEeCC
Q 018322 339 GSDDGTFSIHDLR 351 (358)
Q Consensus 339 gs~Dg~i~iwDlr 351 (358)
||.|-..+|||--
T Consensus 204 gGED~kfKvWD~~ 216 (737)
T KOG1524|consen 204 GGEDFRFKIWDAQ 216 (737)
T ss_pred cCCceeEEeeccc
Confidence 9999999999963
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=8.9e-11 Score=112.89 Aligned_cols=152 Identities=11% Similarity=0.109 Sum_probs=99.9
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
+....++|+|++..++.+.+.+|.+.||.+... ......+..+...+.+..|+|++. .|
T Consensus 248 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~--------------------~~~~~~lt~~~~~~~~~~wSpDG~-~i 306 (429)
T PRK01742 248 GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN--------------------GGTPSQLTSGAGNNTEPSWSPDGQ-SI 306 (429)
T ss_pred CccCceeECCCCCEEEEEEecCCcEEEEEEECC--------------------CCCeEeeccCCCCcCCEEECCCCC-EE
Confidence 334568999999545555567887776654321 122344556666788999999998 55
Q ss_pred E-EEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeE
Q 018322 246 V-TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (358)
Q Consensus 246 ~-sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (358)
+ +++.+|...||++...+... ..+ .+.. ..++|+|++. .|+.++.++ +.+||+.++... .+..+ ....
T Consensus 307 ~f~s~~~g~~~I~~~~~~~~~~---~~l-~~~~--~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~~--~lt~~-~~~~ 375 (429)
T PRK01742 307 LFTSDRSGSPQVYRMSASGGGA---SLV-GGRG--YSAQISADGK-TLVMINGDN-VVKQDLTSGSTE--VLSST-FLDE 375 (429)
T ss_pred EEEECCCCCceEEEEECCCCCe---EEe-cCCC--CCccCCCCCC-EEEEEcCCC-EEEEECCCCCeE--EecCC-CCCC
Confidence 5 44567888999876533322 111 2333 4578999999 676666655 556999875422 22222 1345
Q ss_pred EEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 325 VISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.++|+|++ .+|+.++.+|.+.+|.+
T Consensus 376 ~~~~sPdG-~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 376 SPSISPNG-IMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CceECCCC-CEEEEEEcCCCceEEEE
Confidence 67899999 88888888898888875
No 206
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=3.7e-11 Score=112.18 Aligned_cols=191 Identities=17% Similarity=0.215 Sum_probs=132.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccccccc-----CCC--CCCCCCCCcEEEcCCC--
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVG-----QGA--PQVSNQSPLVKFGGHK-- 229 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~h~-- 229 (358)
++-+.|+...++|..+|+|..++|||..--.|++||+......+...-.... ... .+..-.+.-..+.-|.
T Consensus 45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred HHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 5567799999999999999999999999999999999885544433211000 000 0000000001111111
Q ss_pred ---------CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCc
Q 018322 230 ---------DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300 (358)
Q Consensus 230 ---------~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~ 300 (358)
..+..++++.-.. -|+.++....|+-+++.. +.+. .+|....+.+++|..++-+. +|++|+.+|.
T Consensus 125 G~hy~~RIP~~GRDm~y~~~sc-Dly~~gsg~evYRlNLEq-GrfL---~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~ 198 (703)
T KOG2321|consen 125 GRHYRTRIPKFGRDMKYHKPSC-DLYLVGSGSEVYRLNLEQ-GRFL---NPFETDSGELNVVSINEEHG-LLACGTEDGV 198 (703)
T ss_pred CeeeeeecCcCCccccccCCCc-cEEEeecCcceEEEEccc-cccc---cccccccccceeeeecCccc-eEEecccCce
Confidence 1344566654444 344444466788888866 5655 67777779999999999988 9999999999
Q ss_pred EEEEECCCCCCeeEEE------ecCCC-----CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 301 IAIWDTRVGKSALTSF------KAHNA-----DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 301 I~iwD~r~~~~~~~~~------~~h~~-----~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
|-.||.|.. ..+.++ ..|.. .|++|+|+.+| -.++.|..+|.+.|||||+-++.+
T Consensus 199 VEfwDpR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 199 VEFWDPRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLL 264 (703)
T ss_pred EEEecchhh-hhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCcee
Confidence 999999984 333333 23333 39999999988 899999999999999999876543
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.5e-10 Score=111.26 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=105.7
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCC---CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADT---GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
+..|...|...+|+|++ ..||..+.+ ..|++||+.... ...+..+.+| ..+++|
T Consensus 199 lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~-------------------~~~l~~~~g~---~~~~~w 255 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGA-------------------RKVVASFRGH---NGAPAF 255 (429)
T ss_pred eccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCc-------------------eEEEecCCCc---cCceeE
Confidence 44678899999999999 455655533 469999987621 1122223343 336899
Q ss_pred CCCCCCeEEEE-eCCCcEEEE--ecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE
Q 018322 238 NPITTGRLVTG-DCNSCIYLW--EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 238 s~~~~~~l~sg-s~dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
+|++. +|+.+ +.+|.+.|| |+.. +. . ..+..+...+.+.+|+|++..++++...+|..+||++........
T Consensus 256 SPDG~-~La~~~~~~g~~~Iy~~d~~~-~~-~---~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 256 SPDGS-RLAFASSKDGVLNIYVMGANG-GT-P---SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CCCCC-EEEEEEecCCcEEEEEEECCC-CC-e---EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 99998 77665 468876666 5433 22 1 345556677889999999984444555688899998765332232
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+ .+.. ..++|+|++ ..|+.++.++ +.+||+.+++
T Consensus 330 ~l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~ 364 (429)
T PRK01742 330 LV-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGS 364 (429)
T ss_pred Ee-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCC
Confidence 23 3433 457899999 7777766654 6669998764
No 208
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.32 E-value=1.7e-10 Score=98.49 Aligned_cols=112 Identities=19% Similarity=0.436 Sum_probs=82.1
Q ss_pred CCCceeEEEEcCCCCcEEEE-EeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICAS-WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat-~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
..++|..++|+|++..++++ |..++.|.|||+.. .++..+. ...+..|.|+|.|.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----------------------~~i~~~~--~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----------------------KKIFSFG--TQPRNTISWSPDGR 113 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----------------------cEeEeec--CCCceEEEECCCCC
Confidence 45779999999999555444 44677999999964 4455553 45677899999998
Q ss_pred CeEEEEeC---CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC------CCcEEEEECC
Q 018322 243 GRLVTGDC---NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV------DGHIAIWDTR 307 (358)
Q Consensus 243 ~~l~sgs~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~------Dg~I~iwD~r 307 (358)
+|++|+. .|.|.+||+++... + ..+ +...+..++|+|+|+ +|+++.. |..++||+..
T Consensus 114 -~l~~~g~~n~~G~l~~wd~~~~~~-i---~~~--~~~~~t~~~WsPdGr-~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 114 -FLVLAGFGNLNGDLEFWDVRKKKK-I---STF--EHSDATDVEWSPDGR-YLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred -EEEEEEccCCCcEEEEEECCCCEE-e---ecc--ccCcEEEEEEcCCCC-EEEEEEeccceeccccEEEEEec
Confidence 8888764 46799999985322 1 122 234578999999999 6666653 7889999985
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.32 E-value=1.2e-09 Score=95.72 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=124.9
Q ss_pred CCCCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEee-ccCCccccCC
Q 018322 44 LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVS-NISGKRRELV 122 (358)
Q Consensus 44 ~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~-~l~~~~~~~~ 122 (358)
..++..+..|...|..+.++...-|..++..-++ ++|+-. .|.|+||.+. |+..
T Consensus 72 y~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~-------------riVvvl------~~~I~VytF~~n~k~------ 126 (346)
T KOG2111|consen 72 YPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD-------------RIVVVL------ENKIYVYTFPDNPKL------ 126 (346)
T ss_pred CCCceEEEEecccCcEEEEEEeccceeeEEEcCC-------------eEEEEe------cCeEEEEEcCCChhh------
Confidence 4566667777777777777777888888887776 233333 4689999985 2211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEE-EeCCCcEEEEeCCCCccc
Q 018322 123 PNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICAS-WADTGHVQVWDLRSHLNA 201 (358)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat-~s~dg~V~iwd~~~~~~~ 201 (358)
+..+.....+..+.++.-.... .+||. |-..|.|+|-|+...
T Consensus 127 ---------------------------------l~~~et~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~--- 169 (346)
T KOG2111|consen 127 ---------------------------------LHVIETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLAST--- 169 (346)
T ss_pred ---------------------------------eeeeecccCCCceEeecCCCCc-eEEEcCCCccceEEEEEhhhc---
Confidence 1112222222233322222222 34444 556799999999872
Q ss_pred cccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCc-EEEEecCCCCCcccCCCccccCCCcEE
Q 018322 202 LAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSC-IYLWEPASDATWNVDPNPFIGHSASVE 280 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~-I~lwd~~~~~~~~~~~~~~~~h~~~V~ 280 (358)
...+-..+..|...|.|++.+-+|. ++||+|..|+ |+|||..++.. ....+. -.....|.
T Consensus 170 ----------------~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~-l~E~RR-G~d~A~iy 230 (346)
T KOG2111|consen 170 ----------------KPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTL-LQELRR-GVDRADIY 230 (346)
T ss_pred ----------------CcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcE-eeeeec-CCchheEE
Confidence 1224567889999999999999998 9999999984 78999988543 211111 11346899
Q ss_pred EEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 281 DLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 281 ~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
+++|||+.. ++|..|+.|+|+||.++.
T Consensus 231 ~iaFSp~~s-~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 231 CIAFSPNSS-WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEeCCCcc-EEEEEcCCCeEEEEEeec
Confidence 999999998 999999999999998876
No 210
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=1.1e-10 Score=115.78 Aligned_cols=144 Identities=20% Similarity=0.283 Sum_probs=120.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
-++++|+.-+.|.+|+... ...|. .+.||.+.++++.|+.++. ++++.|.|.+|++|+
T Consensus 146 ~~i~~gsv~~~iivW~~~~--------------------dn~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~ 203 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHE--------------------DNKPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWP 203 (967)
T ss_pred EEEEeccccccEEEEeccc--------------------cCCcc-eecccCCceEEEEEccCCc-EEEEEecCcceeeee
Confidence 7899999999999999874 23444 6889999999999999998 999999999999999
Q ss_pred cCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC-CCeEEEEEeCCCCcEEE
Q 018322 259 PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN-ADVNVISWNRLASCLLA 337 (358)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~-~~V~~i~~~p~~~~~la 337 (358)
+.+..... ....+|+..|..++|+|+ .+++++.|-+.++|+... ..+..+..|. ..|..++..+.. .+++
T Consensus 204 i~s~~~~~---~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~--~~l~~y~~h~g~~iw~~~~~~~~-~~~v 274 (967)
T KOG0974|consen 204 IDSREVLG---CTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNG--TQLEVYDEHSGKGIWKIAVPIGV-IIKV 274 (967)
T ss_pred cccccccC---cccccccceeEEEEeccc---eeEEeccceEEEEEeccc--ceehhhhhhhhcceeEEEEcCCc-eEEE
Confidence 98744322 456789999999999997 699999999999996654 3344566664 468999998888 8999
Q ss_pred EEeCCCCEEEEeCCCC
Q 018322 338 SGSDDGTFSIHDLRLL 353 (358)
Q Consensus 338 sgs~Dg~i~iwDlr~~ 353 (358)
|++.||.+++||+...
T Consensus 275 T~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 275 TGGNDSTLKLWDLNGR 290 (967)
T ss_pred eeccCcchhhhhhhcc
Confidence 9999999999998654
No 211
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.6e-11 Score=113.62 Aligned_cols=162 Identities=15% Similarity=0.230 Sum_probs=131.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCC---CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADT---GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
...+.|...|+.+.|+..| .+|||...+ ..|.|+++... ....-|....+.+.++
T Consensus 515 ~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~---------------------~sQ~PF~kskG~vq~v 572 (733)
T KOG0650|consen 515 CIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKR---------------------KSQSPFRKSKGLVQRV 572 (733)
T ss_pred EEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEecccc---------------------cccCchhhcCCceeEE
Confidence 5678899999999999999 688876654 46899999873 2223344455678899
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
.|+|... +|++++ ...|++||+.. +..+ +.+......|..++.+|.|. -++.|+.|+.+..||+..+.++..+
T Consensus 573 ~FHPs~p-~lfVaT-q~~vRiYdL~k-qelv---KkL~tg~kwiS~msihp~GD-nli~gs~d~k~~WfDldlsskPyk~ 645 (733)
T KOG0650|consen 573 KFHPSKP-YLFVAT-QRSVRIYDLSK-QELV---KKLLTGSKWISSMSIHPNGD-NLILGSYDKKMCWFDLDLSSKPYKT 645 (733)
T ss_pred EecCCCc-eEEEEe-ccceEEEehhH-HHHH---HHHhcCCeeeeeeeecCCCC-eEEEecCCCeeEEEEcccCcchhHH
Confidence 9999998 888887 45899999965 3322 33444456788999999998 6778999999999999987778889
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+..|...|++++|++.- .++++|++||++.||--
T Consensus 646 lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 646 LRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEee
Confidence 99999999999999988 89999999999999854
No 212
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.29 E-value=1.2e-09 Score=97.25 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=92.1
Q ss_pred cCCCceeEEEEcCCCCcEEEE--EeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICAS--WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat--~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
+|...+..+.+++.+ .++|- ....|.|.|||..+ .+++..+..|.+++-||+|+++
T Consensus 127 ~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~n---------------------l~~v~~I~aH~~~lAalafs~~ 184 (391)
T KOG2110|consen 127 PNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTIN---------------------LQPVNTINAHKGPLAALAFSPD 184 (391)
T ss_pred CCccceEeeccCCCC-ceEEecCCCCCceEEEEEccc---------------------ceeeeEEEecCCceeEEEECCC
Confidence 455566666666655 45553 22358999999987 6888999999999999999999
Q ss_pred CCCeEEEEeCCCc-EEEEecCCCCCcccCCCcccc--CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 241 TTGRLVTGDCNSC-IYLWEPASDATWNVDPNPFIG--HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 241 ~~~~l~sgs~dg~-I~lwd~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
|. +|||++..|+ |+|+.+.++.+. ..|.. ....|.+++|+|++. +|++.|..++|+||.+..
T Consensus 185 G~-llATASeKGTVIRVf~v~~G~kl----~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 185 GT-LLATASEKGTVIRVFSVPEGQKL----YEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEK 249 (391)
T ss_pred CC-EEEEeccCceEEEEEEcCCccEe----eeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecc
Confidence 98 9999999885 689999775432 22322 245789999999999 899999999999998753
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=7e-11 Score=117.18 Aligned_cols=159 Identities=17% Similarity=0.202 Sum_probs=115.7
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeC
Q 018322 171 IRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC 250 (358)
Q Consensus 171 i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~ 250 (358)
+.|..+...++ ++|+-..|+|||..... ...-.-.+....+++|.-+..+.+.+++|..
T Consensus 1171 ~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~--------------------~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1171 VDWQQQSGHLL-VTGDVRSIRIWDAHKEQ--------------------VVADIPYGSSTLVTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred eehhhhCCeEE-ecCCeeEEEEEecccce--------------------eEeecccCCCccceeecccccCCceEEEeec
Confidence 45666554444 44557899999998731 1111222344577788766555449999999
Q ss_pred CCcEEEEecCCCCCcccCCCccccCCCc--EEEEEECCCCCCEEEEEECCCcEEEEECCCC-CCeeEEEecC---CCCeE
Q 018322 251 NSCIYLWEPASDATWNVDPNPFIGHSAS--VEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSFKAH---NADVN 324 (358)
Q Consensus 251 dg~I~lwd~~~~~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~~~~~~~h---~~~V~ 324 (358)
||.|++||.+.... ......+..|+.. |..+.+.+.|-.-+++|+.+|.|++||+|+. ......+..| ++.++
T Consensus 1230 DGsvRvyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lT 1308 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALT 1308 (1387)
T ss_pred CCceEEeecccCCc-cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccce
Confidence 99999999987433 1223556678777 9999999988656999999999999999983 2233334444 34699
Q ss_pred EEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 325 VISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
++..+++. .+||+|+. +.|+||++..-
T Consensus 1309 al~VH~ha-piiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1309 ALTVHEHA-PIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred eeeeccCC-CeeeecCc-ceEEEEecChh
Confidence 99999998 89999998 99999998643
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.28 E-value=1.2e-11 Score=114.64 Aligned_cols=118 Identities=18% Similarity=0.306 Sum_probs=96.4
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-.+.|+.++|+|++ .+||+.+.||.+||||+... ..+..++..-+...|++|||+++
T Consensus 289 ~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~---------------------eLlg~mkSYFGGLLCvcWSPDGK- 345 (636)
T KOG2394|consen 289 GEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQ---------------------ELLGVMKSYFGGLLCVCWSPDGK- 345 (636)
T ss_pred ccccccceeEcCCC-ceEEEEecCceEEEeeccHH---------------------HHHHHHHhhccceEEEEEcCCcc-
Confidence 35799999999988 89999999999999999872 33333444446789999999999
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC------------------------------------
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT------------------------------------ 287 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~------------------------------------ 287 (358)
+|++|+.|-.|.||.+.. .+.+ ..-++|++.|..|+|.|-
T Consensus 346 yIvtGGEDDLVtVwSf~e-rRVV---ARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~ 421 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEE-RRVV---ARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEG 421 (636)
T ss_pred EEEecCCcceEEEEEecc-ceEE---EeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCC
Confidence 999999999999999976 3322 456789999999999831
Q ss_pred -----------CCCEEEEEECCCcEEEEECCC
Q 018322 288 -----------EPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 288 -----------~~~~las~s~Dg~I~iwD~r~ 308 (358)
-.+.|.+++.|-.+.|||+..
T Consensus 422 ~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 422 CPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred CcccccccccceEEEeecccccceEEEEecch
Confidence 023688999999999999864
No 215
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.28 E-value=9.9e-12 Score=118.94 Aligned_cols=217 Identities=18% Similarity=0.349 Sum_probs=164.9
Q ss_pred hhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCC
Q 018322 60 LHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSD 139 (358)
Q Consensus 60 ~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (358)
...+.+.|-.--+||-|... .-|-++.|...+ -.||.+.. .
T Consensus 61 ~l~h~tpw~vad~qws~h~a---------~~~wiVsts~qk-----aiiwnlA~---s---------------------- 101 (1081)
T KOG0309|consen 61 WLHHITPWQVADVQWSPHPA---------KPYWIVSTSNQK-----AIIWNLAK---S---------------------- 101 (1081)
T ss_pred eeeccCcchhcceecccCCC---------CceeEEecCcch-----hhhhhhhc---C----------------------
Confidence 34456788888888887642 246666774432 23565531 0
Q ss_pred CCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCC
Q 018322 140 SDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ 219 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (358)
....+++.+.+|...|+.+.|.|+.+.++||++.|..|+.||++. ..
T Consensus 102 -------------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS--------------------p~ 148 (1081)
T KOG0309|consen 102 -------------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS--------------------PH 148 (1081)
T ss_pred -------------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC--------------------CC
Confidence 144567889999999999999999999999999999999999998 45
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (358)
.|+..+..-......++|+.... .+++.+....|++||.+.++... ..+.+|...|+.+.|...-...+.+++.||
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p-~vlasshg~~i~vwd~r~gs~pl---~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~ 224 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDP-NVLASSHGNDIFVWDLRKGSTPL---CSLKGHVSSVNSIDFNRFKYSEIMSSSNDG 224 (1081)
T ss_pred cceeeeecccccCceeeecccCc-chhhhccCCceEEEeccCCCcce---EEecccceeeehHHHhhhhhhhhcccCCCC
Confidence 77776665555677899998887 55555667899999999876654 567779999999999876666899999999
Q ss_pred cEEEEECCCC------------------------------------------------------CCeeEEEecCCCCeEE
Q 018322 300 HIAIWDTRVG------------------------------------------------------KSALTSFKAHNADVNV 325 (358)
Q Consensus 300 ~I~iwD~r~~------------------------------------------------------~~~~~~~~~h~~~V~~ 325 (358)
+|+.||.... ..+++++.+|...|-.
T Consensus 225 tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~e 304 (1081)
T KOG0309|consen 225 TVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLE 304 (1081)
T ss_pred ceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHH
Confidence 9999987321 1256677788887777
Q ss_pred EEEeCCC---------CcEEEEEeCCCCEEEEeCCC
Q 018322 326 ISWNRLA---------SCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 326 i~~~p~~---------~~~lasgs~Dg~i~iwDlr~ 352 (358)
..|-..+ ...|+|-+.|.++++|-+.+
T Consensus 305 FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 305 FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred HhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 6675433 25799999999999998754
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=6.4e-10 Score=107.15 Aligned_cols=162 Identities=14% Similarity=0.039 Sum_probs=103.4
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeC---CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
+..|...+...+|+|++ ..|+..+. ...|++||+... .. ..+..+.....++.|
T Consensus 199 lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g---------------------~~-~~l~~~~g~~~~~~~ 255 (433)
T PRK04922 199 ILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATG---------------------QR-ELVASFRGINGAPSF 255 (433)
T ss_pred eecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCC---------------------CE-EEeccCCCCccCceE
Confidence 33577889999999999 45665553 246999998651 21 222233334457899
Q ss_pred CCCCCCeEEEEeCCC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE-CCCc--EEEEECCCCCCe
Q 018322 238 NPITTGRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGH--IAIWDTRVGKSA 312 (358)
Q Consensus 238 s~~~~~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~--I~iwD~r~~~~~ 312 (358)
+|++..++++.+.+| .|++||+.++.. ..+..+.......+|+|++. .|+.++ .+|. |.++|+..+.
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-----~~lt~~~~~~~~~~~spDG~-~l~f~sd~~g~~~iy~~dl~~g~-- 327 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQL-----TRLTNHFGIDTEPTWAPDGK-SIYFTSDRGGRPQIYRVAASGGS-- 327 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCe-----EECccCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCCC--
Confidence 999983334556555 599999876322 23444555566789999998 555555 4555 5556665532
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEe-CCC--CEEEEeCCCCC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGS-DDG--TFSIHDLRLLK 354 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs-~Dg--~i~iwDlr~~~ 354 (358)
...+..+......++|+|++ ..|+..+ .++ .|.+||+.+.+
T Consensus 328 ~~~lt~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 328 AERLTFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred eEEeecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCC
Confidence 33333334445578999999 5665543 333 69999997664
No 217
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=8.1e-10 Score=99.90 Aligned_cols=115 Identities=26% Similarity=0.373 Sum_probs=92.1
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS- 311 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~- 311 (358)
.+++|+.++. .|++|+.||++|+|+..+... ......|...|.++.|+|++. ++++.+.| ..+||+++++..
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t----~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLT----ILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchh----hhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchh
Confidence 6899999998 999999999999999654332 245667999999999999999 99999999 999999987510
Q ss_pred --------------------------eeE----------E--E-ecC-------------CCCeEEEEEeCCCCcEEEEE
Q 018322 312 --------------------------ALT----------S--F-KAH-------------NADVNVISWNRLASCLLASG 339 (358)
Q Consensus 312 --------------------------~~~----------~--~-~~h-------------~~~V~~i~~~p~~~~~lasg 339 (358)
.+. . + ..+ ...|.+++.+++| .++|.|
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~AlG 299 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLALG 299 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEEe
Confidence 000 0 0 001 1258899999999 999999
Q ss_pred eCCCCEEEEeCCCCCC
Q 018322 340 SDDGTFSIHDLRLLKV 355 (358)
Q Consensus 340 s~Dg~i~iwDlr~~~~ 355 (358)
+.||.|.|++..+++.
T Consensus 300 T~dGsVai~~~~~lq~ 315 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQR 315 (398)
T ss_pred ccCCcEEEEEeceeee
Confidence 9999999999987764
No 218
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.25 E-value=3.4e-09 Score=98.37 Aligned_cols=171 Identities=9% Similarity=0.065 Sum_probs=111.5
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
....+.+....+.++|++..+++++..++.|.+|++.... . ........ .......++++|
T Consensus 29 ~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-~-----------------l~~~~~~~-~~~~p~~i~~~~ 89 (330)
T PRK11028 29 QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-A-----------------LTFAAESP-LPGSPTHISTDH 89 (330)
T ss_pred eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC-c-----------------eEEeeeec-CCCCceEEEECC
Confidence 3445567788999999995555555668899999996310 0 01111111 122456899999
Q ss_pred CCCCeEEEEe-CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee----E
Q 018322 240 ITTGRLVTGD-CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL----T 314 (358)
Q Consensus 240 ~~~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~----~ 314 (358)
+++ +|++++ .++.|.+|++.+.+........+. +...+..++++|+++.+++++..++.|.+||+....... .
T Consensus 90 ~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 90 QGR-FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred CCC-EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 998 666665 488999999975333211111122 234567789999998666777788999999998632211 1
Q ss_pred EEe-cCCCCeEEEEEeCCCCcEEEEEeC-CCCEEEEeCCC
Q 018322 315 SFK-AHNADVNVISWNRLASCLLASGSD-DGTFSIHDLRL 352 (358)
Q Consensus 315 ~~~-~h~~~V~~i~~~p~~~~~lasgs~-Dg~i~iwDlr~ 352 (358)
... ........+.|+|++ .+++++.. +++|.+|++..
T Consensus 168 ~~~~~~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 168 EVTTVEGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred ceecCCCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeC
Confidence 111 123456789999999 66655554 89999999973
No 219
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=3e-10 Score=101.76 Aligned_cols=169 Identities=12% Similarity=0.100 Sum_probs=121.8
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC---CCeEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK---DEGYAI 235 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l 235 (358)
+.-..|...|.|+.|...+ .++.+|..+++|.+.|+.+ .+.+.++ .|. +.||.+
T Consensus 99 ~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt---------------------~qsi~V~-~~~~~~~~VY~m 155 (609)
T KOG4227|consen 99 VMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIET---------------------KQSIYVA-NENNNRGDVYHM 155 (609)
T ss_pred eccCccccceEEEEEccCC-eeEecCCCcceeEeeeccc---------------------ceeeeee-cccCcccceeec
Confidence 3445677999999999877 7999999999999999987 3334433 343 489999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
+-+|..+ .|++.+.+|.|.+||++....... +............+-|+|-.+.+|++.+..+-+-+||+|....++..
T Consensus 156 ~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~-~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~ 233 (609)
T KOG4227|consen 156 DQHPTDN-TLIVVTRAKLVSFIDNRDRQNPIS-LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ 233 (609)
T ss_pred ccCCCCc-eEEEEecCceEEEEeccCCCCCCc-eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh
Confidence 9999976 999999999999999987543221 12223345678889999999989999999999999999986655544
Q ss_pred EecC------CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 316 FKAH------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 316 ~~~h------~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.... ...-..+.|+|.|..++ +--.-..-.+||+.+.
T Consensus 234 ~~~~~~L~~~~~~~M~~~~~~~G~Q~m-siRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 234 RSMFKGLPQENTEWMGSLWSPSGNQFM-SIRRGKCPLYFDFISQ 276 (609)
T ss_pred hhccccCcccchhhhheeeCCCCCeeh-hhhccCCCEEeeeecc
Confidence 3221 11224678999994443 3322233345555543
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2.6e-09 Score=103.01 Aligned_cols=161 Identities=12% Similarity=0.066 Sum_probs=106.9
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeC---CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
+..|.+.+...+|+|++. .||..+. +..|++||+.. ... ..+..+...+.+.+|
T Consensus 197 lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~---------------------g~~-~~l~~~~g~~~~~~~ 253 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLET---------------------GQR-ELVGNFPGMTFAPRF 253 (435)
T ss_pred EecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCC---------------------CcE-EEeecCCCcccCcEE
Confidence 346788999999999994 5555442 46899999976 222 234455566778999
Q ss_pred CCCCCCeEEEEeCCCc--EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE-CCC--cEEEEECCCCCCe
Q 018322 238 NPITTGRLVTGDCNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDG--HIAIWDTRVGKSA 312 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg--~I~iwD~r~~~~~ 312 (358)
+|++..++++.+.++. |++||+.++.. ..+..+.......+|+|++. .++..+ .+| .|.+||+..+ .
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-----~~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~--~ 325 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTT-----TRLTDSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGS--N 325 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCce-----EEccCCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCC--C
Confidence 9999833456666665 77778765322 33444555667789999998 555555 344 5777787653 2
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEeCC---CCEEEEeCCCC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLL 353 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs~D---g~i~iwDlr~~ 353 (358)
...+..+...+....|+|++ ..|+..+.+ ..|.+||+...
T Consensus 326 ~~~lt~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 326 PRRISFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred eEEeecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCC
Confidence 34444445567778999999 666555432 36788887543
No 221
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=3.9e-10 Score=105.53 Aligned_cols=167 Identities=15% Similarity=0.262 Sum_probs=121.4
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC-----CCCeEEEEeC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-----KDEGYAIDWN 238 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~s 238 (358)
-.+++|+|..++-+ .+||+|+.+|.|..||.+....... ......+..| ...|++|.|+
T Consensus 174 ~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~---------------l~~~~~v~s~pg~~~~~svTal~F~ 237 (703)
T KOG2321|consen 174 DSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGT---------------LDAASSVNSHPGGDAAPSVTALKFR 237 (703)
T ss_pred ccccceeeeecCcc-ceEEecccCceEEEecchhhhhhee---------------eecccccCCCccccccCcceEEEec
Confidence 34899999999988 7999999999999999987321110 0011111122 2369999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC-CEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
.+|- .+++|...|.|.|||+++..... ..-.+...+|..+.|.+.+. +.++|+ ....++|||-.+++ ++..+.
T Consensus 238 d~gL-~~aVGts~G~v~iyDLRa~~pl~---~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk-~~asiE 311 (703)
T KOG2321|consen 238 DDGL-HVAVGTSTGSVLIYDLRASKPLL---VKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGK-PMASIE 311 (703)
T ss_pred CCce-eEEeeccCCcEEEEEcccCCcee---ecccCCccceeeecccccCCCceEEec-chHHhhhcccccCC-ceeecc
Confidence 9987 99999999999999999854432 22233457899999987633 245544 35789999999864 555554
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
. ...+|.+++-|++ -+++++-.++.+..|=+..+.
T Consensus 312 p-t~~lND~C~~p~s-Gm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 312 P-TSDLNDFCFVPGS-GMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred c-cCCcCceeeecCC-ceEEEecCCCcceeEEccccC
Confidence 3 4459999999998 899999888888777665544
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=3.5e-09 Score=102.13 Aligned_cols=161 Identities=12% Similarity=0.114 Sum_probs=102.1
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCc--EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
..+.+.+...+|+|++..++++.+.+|. |++||+.. .....+..+........|+|
T Consensus 242 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~----------------------~~~~~Lt~~~~~~~~~~~sp 299 (435)
T PRK05137 242 GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS----------------------GTTTRLTDSPAIDTSPSYSP 299 (435)
T ss_pred ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC----------------------CceEEccCCCCccCceeEcC
Confidence 3466778889999999666667777766 66667655 22334545555567789999
Q ss_pred CCCCeEEEEe-CCC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC---CcEEEEECCCCCCee
Q 018322 240 ITTGRLVTGD-CNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD---GHIAIWDTRVGKSAL 313 (358)
Q Consensus 240 ~~~~~l~sgs-~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D---g~I~iwD~r~~~~~~ 313 (358)
++. +|+..+ .+| .|++||+..+.. ..+..+...+....|+|++. .++..+.+ ..|.+||+..+. .
T Consensus 300 DG~-~i~f~s~~~g~~~Iy~~d~~g~~~-----~~lt~~~~~~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~--~ 370 (435)
T PRK05137 300 DGS-QIVFESDRSGSPQLYVMNADGSNP-----RRISFGGGRYSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSG--E 370 (435)
T ss_pred CCC-EEEEEECCCCCCeEEEEECCCCCe-----EEeecCCCcccCeEECCCCC-EEEEEEcCCCceEEEEEECCCCc--e
Confidence 998 666555 333 677778754221 22333345567789999999 66555443 368888875532 2
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCC-----CCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~D-----g~i~iwDlr~~~ 354 (358)
..+. ....+..++|+|++..+++++... ..|.++|+....
T Consensus 371 ~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 371 RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 2232 233567889999994444444333 257888886543
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=7.8e-10 Score=106.30 Aligned_cols=165 Identities=15% Similarity=0.071 Sum_probs=104.1
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeC-C--CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWAD-T--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~-d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+.+...+|+|++ ..||..+. + ..|++||+.. ... ..+........+.+|+
T Consensus 192 ~~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~---------------------g~~-~~l~~~~g~~~~~~~S 248 (427)
T PRK02889 192 LSSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLAT---------------------GRR-RVVANFKGSNSAPAWS 248 (427)
T ss_pred ccCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCC---------------------CCE-EEeecCCCCccceEEC
Confidence 3577889999999999 45555443 2 3599999976 222 2232333455689999
Q ss_pred CCCCCeEE-EEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 239 PITTGRLV-TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 239 ~~~~~~l~-sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
|++. .|+ +.+.+|...||.+...+... ..+..+...+....|+|+++.+++++..+|...||.+.........+.
T Consensus 249 PDG~-~la~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 249 PDGR-TLAVALSRDGNSQIYTVNADGSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCCC-EEEEEEccCCCceEEEEECCCCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 9998 655 66778887777654322211 334445555667899999994444444457777776543222223333
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCC---CEEEEeCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDG---TFSIHDLRLLK 354 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg---~i~iwDlr~~~ 354 (358)
.+.......+|+|+| .+|+..+.++ .|.+||+.+.+
T Consensus 325 ~~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 325 FTGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred cCCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCC
Confidence 233334467999999 6776655443 69999997654
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=4.5e-10 Score=99.80 Aligned_cols=161 Identities=17% Similarity=0.303 Sum_probs=114.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.-.+..++|++.- ..+|++..|-.|+||+-+. ..+...-...+..|+||+|-|.+...
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~kss---------------------t~pt~Lks~sQrnvtclawRPlsase 155 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS---------------------TCPTKLKSVSQRNVTCLAWRPLSASE 155 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCC---------------------CCCceecchhhcceeEEEeccCCcce
Confidence 4567788999855 6788899999999999766 12222222345689999999998756
Q ss_pred EEEEeCCCcEEEEecCCCCCccc----------CCCccccCCCcEEEEEECCCCCCEEEEEEC-CCcEEEEECCCCCCee
Q 018322 245 LVTGDCNSCIYLWEPASDATWNV----------DPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSAL 313 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~----------~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~ 313 (358)
|+.|+ .+.|++|.......... ......+| ..|++++|.+++. .+++++. |..|+|||..++.. +
T Consensus 156 lavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~-~ 231 (445)
T KOG2139|consen 156 LAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQK-I 231 (445)
T ss_pred eeeee-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCc-c
Confidence 66666 66799998754221110 01123345 6899999999998 7777764 78999999998532 2
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.-.....+.+.-+.|+|++ .+|..+.-|+..++|...+
T Consensus 232 pL~~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 232 PLIPKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred cccccCCCceeeEEEcCCC-CEEEEecccceeeeehhcc
Confidence 2122345568899999999 7787888999999996543
No 225
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.21 E-value=1.3e-10 Score=100.59 Aligned_cols=142 Identities=17% Similarity=0.114 Sum_probs=110.6
Q ss_pred eeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEE
Q 018322 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 247 (358)
..++.|++.+ .-++++-.+|.+.+-+.... ..+.++.++.|.-+.+...|+...++++.+
T Consensus 124 ~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~-------------------~le~vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 124 ALSLDISTSG-TKIFVSDSRGSISGVYETEM-------------------VLEKVQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred eeEEEeeccC-ceEEEEcCCCcEEEEeccee-------------------eeeecccccccceeeeeeecccCCCceEEe
Confidence 3456667766 45677777788874444331 234456788999999999999888889999
Q ss_pred EeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEE
Q 018322 248 GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVIS 327 (358)
Q Consensus 248 gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~ 327 (358)
|+.|+.+..||+|.++.++ -+....|+..|.+|.-+|..++++++|+.|-.|++||+|+..+|+..-. -.+.|..|.
T Consensus 184 GgDD~~l~~~D~R~p~~~i--~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~ 260 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFI--WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIK 260 (339)
T ss_pred cCCCceEEEEEecCCccee--eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEE
Confidence 9999999999999666544 2345669999999999998888999999999999999997666665432 346799999
Q ss_pred EeCCC
Q 018322 328 WNRLA 332 (358)
Q Consensus 328 ~~p~~ 332 (358)
++|..
T Consensus 261 ~~p~~ 265 (339)
T KOG0280|consen 261 HHPEI 265 (339)
T ss_pred ecchh
Confidence 99965
No 226
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.20 E-value=7.9e-12 Score=120.99 Aligned_cols=120 Identities=26% Similarity=0.457 Sum_probs=105.8
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (358)
+.+..+.||...|||..|...|. ++++|+.|..++||...+. .+ .....||.+.|++++.+.... ++|++|.|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~-~~---lAs~rGhs~ditdlavs~~n~-~iaaaS~D~ 254 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETA-RC---LASCRGHSGDITDLAVSSNNT-MIAAASNDK 254 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccch-hh---hccCCCCccccchhccchhhh-hhhhcccCc
Confidence 34456779999999999999998 9999999999999997663 32 367889999999999988776 999999999
Q ss_pred cEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.|++|-++.+ .++..+.+|.+.|++|+|+|-. +.+.||++++||.|
T Consensus 255 vIrvWrl~~~-~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 255 VIRVWRLPDG-APVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR 300 (1113)
T ss_pred eEEEEecCCC-chHHHHhccccceeeeccCccc-----cCCCCCceEecccc
Confidence 9999999985 5888889999999999999944 77899999999998
No 227
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.20 E-value=1.8e-10 Score=98.35 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=96.9
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
......|.++|..+.|.+.- ..=++|+.+-.+..|.++....+.. ......+ -...+..+..
T Consensus 198 ~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq---------------~~~e~~l--knpGv~gvrI 259 (323)
T KOG0322|consen 198 ESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQ---------------IRKEITL--KNPGVSGVRI 259 (323)
T ss_pred ccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCccc---------------ccceEEe--cCCCccceEE
Confidence 34556799999999998766 3456778888899999987432220 1111112 2236778899
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
-|+++ .|||++.|++|++|..++... ...+.-|.+.|++++|+|+.+ ++|+++.|+.|.+|++
T Consensus 260 RpD~K-IlATAGWD~RiRVyswrtl~p----LAVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 260 RPDGK-ILATAGWDHRIRVYSWRTLNP----LAVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred ccCCc-EEeecccCCcEEEEEeccCCc----hhhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence 99999 999999999999999988544 345677999999999999977 9999999999999986
No 228
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=7.1e-10 Score=108.39 Aligned_cols=194 Identities=16% Similarity=0.195 Sum_probs=128.2
Q ss_pred EEEecCCCceeEEEEcCCCC--cEEEEEeCCCcEEEEeCCCCccc--cc----cccccc-------------cCC-----
Q 018322 159 LRKVAHQGCVNRIRAMTQNP--HICASWADTGHVQVWDLRSHLNA--LA----ESETIV-------------GQG----- 212 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~--~~lat~s~dg~V~iwd~~~~~~~--~~----~~~~~~-------------~~~----- 212 (358)
..+..|..++..+.+.|..+ .++.+++.+|.|++||....... +. ...... ...
T Consensus 51 ~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~ 130 (792)
T KOG1963|consen 51 TSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSIL 130 (792)
T ss_pred hhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceee
Confidence 36678999999999998875 56779999999999998762110 00 000000 000
Q ss_pred ------CCCCCCCCCcEEE--------cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCc
Q 018322 213 ------APQVSNQSPLVKF--------GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS 278 (358)
Q Consensus 213 ------~~~~~~~~~~~~~--------~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~ 278 (358)
.......-.+.++ ..|.. -.+|..++.+. +.+. -.+..+++|..............-..|+-.
T Consensus 131 ~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge-~~~i-~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~ 207 (792)
T KOG1963|consen 131 TTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGE-FKGI-VHMCKIHIYFVPKHTKHTSSRDITVHHTFN 207 (792)
T ss_pred eecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCce-EEEE-EEeeeEEEEEecccceeeccchhhhhhccc
Confidence 0000000000111 12211 24677777765 3333 346688999987744211111222347777
Q ss_pred EEEEEECCCCCCEEEEEECCCcEEEEECCC---CCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRV---GKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~---~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
++++++||+++ ++|++..||.|.+|.--. .......++.|...|++++|+++| .+|+|||..|.+-+|.+.+.++
T Consensus 208 ~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k 285 (792)
T KOG1963|consen 208 ITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK 285 (792)
T ss_pred ceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc
Confidence 99999999999 999999999999994322 112456678899999999999999 8999999999999999999886
Q ss_pred CC
Q 018322 356 RL 357 (358)
Q Consensus 356 ~l 357 (358)
.+
T Consensus 286 qf 287 (792)
T KOG1963|consen 286 QF 287 (792)
T ss_pred cc
Confidence 54
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=5.1e-09 Score=100.64 Aligned_cols=159 Identities=12% Similarity=0.069 Sum_probs=100.5
Q ss_pred cCCCceeEEEEcCCCCcEEEEEe---CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWA---DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s---~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.+.+.+...+|+|++. .||..+ ....|++|++.... ...+..+.+ ...++.|+|
T Consensus 196 ~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~-------------------~~~l~~~~~---~~~~~~~SP 252 (429)
T PRK03629 196 RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGA-------------------VRQVASFPR---HNGAPAFSP 252 (429)
T ss_pred cCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCC-------------------eEEccCCCC---CcCCeEECC
Confidence 4677899999999995 454433 23578999986510 112222233 344689999
Q ss_pred CCCCeEEE-EeCCC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-CCcEEEE--ECCCCCCee
Q 018322 240 ITTGRLVT-GDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIW--DTRVGKSAL 313 (358)
Q Consensus 240 ~~~~~l~s-gs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iw--D~r~~~~~~ 313 (358)
++. .|+. .+.+| .|++||+.++ .. ..+..+...+....|+|++. .|+.++. ++...|| |+..+ ..
T Consensus 253 DG~-~La~~~~~~g~~~I~~~d~~tg-~~----~~lt~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~d~~~g--~~ 323 (429)
T PRK03629 253 DGS-KLAFALSKTGSLNLYVMDLASG-QI----RQVTDGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKVNINGG--AP 323 (429)
T ss_pred CCC-EEEEEEcCCCCcEEEEEECCCC-CE----EEccCCCCCcCceEECCCCC-EEEEEeCCCCCceEEEEECCCC--Ce
Confidence 998 6654 44455 5888998763 22 22333445678899999998 6655554 4555555 55543 23
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEe-CC--CCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGS-DD--GTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs-~D--g~i~iwDlr~~~ 354 (358)
..+..+........|+|+| ..|+..+ .+ ..|.+||+.+.+
T Consensus 324 ~~lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 324 QRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred EEeecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCC
Confidence 3444444556678999999 6665544 33 358889987664
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=5.5e-09 Score=100.43 Aligned_cols=154 Identities=13% Similarity=0.098 Sum_probs=95.9
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.+.+..++|+|++..++.+.+.+| .|++||+.. .. ...+..+...+....|+|++.
T Consensus 242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t---------------------g~-~~~lt~~~~~~~~~~wSPDG~ 299 (429)
T PRK03629 242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---------------------GQ-IRQVTDGRSNNTEPTWFPDSQ 299 (429)
T ss_pred CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC---------------------CC-EEEccCCCCCcCceEECCCCC
Confidence 344556899999965555555555 488888865 12 223333444677899999998
Q ss_pred CeEEEEeC-CCcEEEE--ecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-C--CcEEEEECCCCCCeeEEE
Q 018322 243 GRLVTGDC-NSCIYLW--EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-D--GHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 243 ~~l~sgs~-dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-D--g~I~iwD~r~~~~~~~~~ 316 (358)
.|+.++. ++...|| ++..+ .. ..+..+...+....|+|++. .++..+. + ..|.+||+.++. ...+
T Consensus 300 -~I~f~s~~~g~~~Iy~~d~~~g-~~----~~lt~~~~~~~~~~~SpDG~-~Ia~~~~~~g~~~I~~~dl~~g~--~~~L 370 (429)
T PRK03629 300 -NLAYTSDQAGRPQVYKVNINGG-AP----QRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGG--VQVL 370 (429)
T ss_pred -EEEEEeCCCCCceEEEEECCCC-Ce----EEeecCCCCccCEEECCCCC-EEEEEEccCCCceEEEEECCCCC--eEEe
Confidence 6765554 4555555 55432 21 22333344566789999998 5555443 3 358889988753 2333
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCC---EEEEeCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGT---FSIHDLR 351 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~---i~iwDlr 351 (358)
... .......|+|+| .+|+.++.++. +.++++.
T Consensus 371 t~~-~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 371 TDT-FLDETPSIAPNG-TMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred CCC-CCCCCceECCCC-CEEEEEEcCCCceEEEEEECC
Confidence 322 223467899999 77777776653 6777764
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=3.7e-09 Score=101.58 Aligned_cols=159 Identities=11% Similarity=0.106 Sum_probs=96.9
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
..+.+...+|+|++..++++.+.+|...||.+... ......+..+........|+|++.
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~--------------------~~~~~~lt~~~~~~~~~~wSpDG~- 296 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD--------------------GSGLRRLTQSSGIDTEPFFSPDGR- 296 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECC--------------------CCCcEECCCCCCCCcCeEEcCCCC-
Confidence 45667789999999666667788888777776441 122334444544556788999998
Q ss_pred eEEEEe-CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC---cEEEEECCCCCCeeEEEecC
Q 018322 244 RLVTGD-CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG---HIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 244 ~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg---~I~iwD~r~~~~~~~~~~~h 319 (358)
+|+..+ .+|...||.+...+... ..+..+.......+|+|++. .++..+.++ .|.+||+.++. ...+..+
T Consensus 297 ~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt~~g~~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~--~~~lt~~ 370 (427)
T PRK02889 297 SIYFTSDRGGAPQIYRMPASGGAA---QRVTFTGSYNTSPRISPDGK-LLAYISRVGGAFKLYVQDLATGQ--VTALTDT 370 (427)
T ss_pred EEEEEecCCCCcEEEEEECCCCce---EEEecCCCCcCceEECCCCC-EEEEEEccCCcEEEEEEECCCCC--eEEccCC
Confidence 665444 45677777664322211 11111222344678999999 666655544 69999998753 2233322
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCC--EEEEeC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGT--FSIHDL 350 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~--i~iwDl 350 (358)
......+|+|++..++++....|. +.+.++
T Consensus 371 -~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 371 -TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred -CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 334678999999444444434443 555555
No 232
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=120.83 Aligned_cols=156 Identities=18% Similarity=0.314 Sum_probs=124.3
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
+++...+..+. ..|++++|+.+| +.+..+..||.+.+|.+.. ++....+.|.....
T Consensus 2241 ~~v~~~rt~g~-s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~p----------------------k~~~s~qchnk~~~ 2296 (2439)
T KOG1064|consen 2241 QQVVCFRTAGN-SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASP----------------------KPYTSWQCHNKALS 2296 (2439)
T ss_pred CeEEEeeccCc-chhhhhhhcccC-CceeeeccCCceeecccCC----------------------cceeccccCCcccc
Confidence 55555555555 999999999999 6788889999999999875 67777888988888
Q ss_pred EEEeCCCCCCeEEEEe---CCCcEEEEecCCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 234 AIDWNPITTGRLVTGD---CNSCIYLWEPASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs---~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
.+.|-. . .+++++ .++.+++||..-.+. +. .-..|.+.++++++.|... +|++|+.+|.|++||+|.
T Consensus 2297 Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~----v~~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rq- 2367 (2439)
T KOG1064|consen 2297 DFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSL----VHTCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQ- 2367 (2439)
T ss_pred ceeeee--h-hhhccccCCCCCcccchhcccCcccce----eeeecCCCceEEEEcCcce-EEEecCCcCcEEEeehHH-
Confidence 888866 3 566653 568999999765333 22 1277999999999999999 999999999999999998
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
++..+++.+ +. .. .++++|+..|.++||++..+
T Consensus 2368 rql~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2368 RQLRHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred HHHHHHhhh---------hh-hh-heeeccCcccceEEEEcccc
Confidence 345555543 44 33 79999999999999999876
No 233
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.17 E-value=5.1e-09 Score=97.23 Aligned_cols=170 Identities=12% Similarity=0.159 Sum_probs=105.1
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
+......+.++|++..++++...++.|.+||+.... .+... ......... ......+.|+|++.
T Consensus 124 ~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g-~l~~~-------------~~~~~~~~~-g~~p~~~~~~pdg~- 187 (330)
T PRK11028 124 GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG-HLVAQ-------------EPAEVTTVE-GAGPRHMVFHPNQQ- 187 (330)
T ss_pred CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC-ccccc-------------CCCceecCC-CCCCceEEECCCCC-
Confidence 334567788999996676777788999999997621 11000 000011111 23456799999998
Q ss_pred eEEEEeC-CCcEEEEecCCC-CCcccCCCcccc------CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 244 RLVTGDC-NSCIYLWEPASD-ATWNVDPNPFIG------HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 244 ~l~sgs~-dg~I~lwd~~~~-~~~~~~~~~~~~------h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
+|++++. ++.|.+|++... +... ....+.. +......+.++|+++.++++...++.|.+|++...... ..
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~ 265 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIE-CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LS 265 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEE-EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EE
Confidence 8777765 899999999742 2211 0111111 12233468999999944444456899999999653221 12
Q ss_pred EecC---CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 316 FKAH---NADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 316 ~~~h---~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+..+ ......++|+|++..++++...+++|.+|++.
T Consensus 266 ~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 266 FEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2111 22456789999994444455558999999875
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=3.8e-10 Score=101.13 Aligned_cols=139 Identities=18% Similarity=0.272 Sum_probs=114.2
Q ss_pred CceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 166 GCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 166 ~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
-.++.++|-+.. +..|||++.-+.|++||... +..|+..|.--..+++++...|.+. +
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~--------------------qRRPV~~fd~~E~~is~~~l~p~gn-~ 261 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRH--------------------QRRPVAQFDFLENPISSTGLTPSGN-F 261 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcc--------------------cCcceeEeccccCcceeeeecCCCc-E
Confidence 456678887762 37899999999999999997 5789999988889999999999998 9
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeE
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (358)
+++|..-|.+..+|++.+... ...+.+.+++|.+|..+|+++ ++|+|+-|..|||+|+.+ ..++..+. -.+.++
T Consensus 262 Iy~gn~~g~l~~FD~r~~kl~---g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt-rkll~kvY-vKs~lt 335 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRGGKLL---GCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT-RKLLHKVY-VKSRLT 335 (412)
T ss_pred EEEecccchhheecccCceee---ccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc-chhhhhhh-hhcccc
Confidence 999999999999999874332 245788899999999999999 999999999999999998 34443332 234567
Q ss_pred EEEEeCC
Q 018322 325 VISWNRL 331 (358)
Q Consensus 325 ~i~~~p~ 331 (358)
+|.+.++
T Consensus 336 ~il~~~~ 342 (412)
T KOG3881|consen 336 FILLRDD 342 (412)
T ss_pred EEEecCC
Confidence 7777554
No 235
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=6.4e-10 Score=98.25 Aligned_cols=260 Identities=17% Similarity=0.205 Sum_probs=159.2
Q ss_pred HHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCC
Q 018322 56 AYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDS 135 (358)
Q Consensus 56 ~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (358)
-+|+|.+...+=+..-+.|++++.+ ..|++.| .+..|.+|++..-...+... .+|... +-..
T Consensus 74 EFDYLkSleieEKinkIrw~~~~n~---------a~FLlst-----NdktiKlWKi~er~~k~~~~-~~~~~~---~~~~ 135 (433)
T KOG1354|consen 74 EFDYLKSLEIEEKINKIRWLDDGNL---------AEFLLST-----NDKTIKLWKIRERGSKKEGY-NLPEEG---PPGT 135 (433)
T ss_pred ccchhhhhhhhhhhhhceecCCCCc---------cEEEEec-----CCcceeeeeeeccccccccc-cccccC---CCCc
Confidence 3578888888889999999998632 3566666 34489999996322221000 000000 0000
Q ss_pred CCC--CCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCC
Q 018322 136 ESS--DSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGA 213 (358)
Q Consensus 136 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 213 (358)
.-. -.-.-.-+... +..|.. .-.-+|+-.||+|.++.+.. .+.+ ++|-.|.+|++.....++...+
T Consensus 136 ~~~lr~p~~~~~~~~v--ea~prR-v~aNaHtyhiNSIS~NsD~E-t~lS-ADdLRINLWnlei~d~sFnIVD------- 203 (433)
T KOG1354|consen 136 ITSLRLPVEGRHDLEV--EASPRR-VYANAHTYHINSISVNSDKE-TFLS-ADDLRINLWNLEIIDQSFNIVD------- 203 (433)
T ss_pred cceeeceeecccccee--eeeeee-eccccceeEeeeeeecCccc-eEee-ccceeeeeccccccCCceeEEE-------
Confidence 000 00000000000 001111 12345899999999999884 4444 5778999999977332221110
Q ss_pred CCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccC------------CCccccCCCcEEE
Q 018322 214 PQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD------------PNPFIGHSASVED 281 (358)
Q Consensus 214 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~------------~~~~~~h~~~V~~ 281 (358)
.+|.. +..-+.-|++..|+|...+.|+-.+..|+|+|.|++...-+... ..-|..--++|.+
T Consensus 204 -----IKP~n-mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISD 277 (433)
T KOG1354|consen 204 -----IKPAN-MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISD 277 (433)
T ss_pred -----ccccC-HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhc
Confidence 11110 11112357889999998778888888999999999853211100 1113334578999
Q ss_pred EEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC------------C---eEEEEEeCCCCcEEEEEeCCCCEE
Q 018322 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA------------D---VNVISWNRLASCLLASGSDDGTFS 346 (358)
Q Consensus 282 v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~------------~---V~~i~~~p~~~~~lasgs~Dg~i~ 346 (358)
++|+++|+ ++++-.. -+|+|||+.....++.++..|.. . -..++|+-++ ..++||+....++
T Consensus 278 vKFs~sGr-yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~fr 354 (433)
T KOG1354|consen 278 VKFSHSGR-YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFR 354 (433)
T ss_pred eEEccCCc-EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEE
Confidence 99999999 7766543 69999999776678887776642 2 2457899888 8999999999999
Q ss_pred EEeCCCCC
Q 018322 347 IHDLRLLK 354 (358)
Q Consensus 347 iwDlr~~~ 354 (358)
++++..+.
T Consensus 355 vf~~~~gs 362 (433)
T KOG1354|consen 355 VFNLARGS 362 (433)
T ss_pred EecCCCCc
Confidence 99976554
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.15 E-value=4.6e-09 Score=106.08 Aligned_cols=213 Identities=16% Similarity=0.183 Sum_probs=141.5
Q ss_pred ccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEec
Q 018322 84 NEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVA 163 (358)
Q Consensus 84 ~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (358)
..-+|+-+||.|+ .++.|.||++..+.+.. ..-.-+.+...
T Consensus 1056 ~s~~~~s~FvsgS-----~DGtVKvW~~~k~~~~~----------------------------------~s~rS~ltys~ 1096 (1431)
T KOG1240|consen 1056 VSSEHTSLFVSGS-----DDGTVKVWNLRKLEGEG----------------------------------GSARSELTYSP 1096 (1431)
T ss_pred ecCCCCceEEEec-----CCceEEEeeehhhhcCc----------------------------------ceeeeeEEEec
Confidence 3556777888887 67799999885432210 01122233444
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC--CeEEEEeCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~ 241 (358)
-...+.++..++.+ ..+|.++.||.|++.++........ ..........+.. -+...++....
T Consensus 1097 ~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~--------------~~~~~ri~n~~~~g~vv~m~a~~~~~ 1161 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKR--------------VATQVRIPNLKKDGVVVSMHAFTAIV 1161 (1431)
T ss_pred cCCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccc--------------eeeeeecccccCCCceEEeecccccc
Confidence 56889999999988 7889999999999999987311100 0111111112221 22233333333
Q ss_pred CC-eEEEEeCCCcEEEEecCCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-ec
Q 018322 242 TG-RLVTGDCNSCIYLWEPASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KA 318 (358)
Q Consensus 242 ~~-~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~ 318 (358)
.. .|+.+..-+.|..||++.... |. .......+.|++++.+|.+. ++++|+..|.+.+||+|-. .++.+. ..
T Consensus 1162 ~S~~lvy~T~~~~iv~~D~r~~~~~w~---lk~~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~-~~i~sw~~P 1236 (1431)
T KOG1240|consen 1162 QSHVLVYATDLSRIVSWDTRMRHDAWR---LKNQLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFR-VPILSWEHP 1236 (1431)
T ss_pred cceeEEEEEeccceEEecchhhhhHHh---hhcCccccceeEEEecCCce-EEEEecCCceEEEEEeecC-ceeecccCc
Confidence 22 778888899999999987432 22 22333458899999999998 9999999999999999984 566655 44
Q ss_pred CCCCeEEEEEeCCCC--cEEE-EEe-CCCCEEEEeCCCCCC
Q 018322 319 HNADVNVISWNRLAS--CLLA-SGS-DDGTFSIHDLRLLKV 355 (358)
Q Consensus 319 h~~~V~~i~~~p~~~--~~la-sgs-~Dg~i~iwDlr~~~~ 355 (358)
+..+|+.+..+|.-+ ...+ +|+ ..+.|.+|++.++..
T Consensus 1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 567888888877543 3444 444 578999999988754
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=7.8e-09 Score=99.61 Aligned_cols=156 Identities=14% Similarity=0.151 Sum_probs=97.2
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
+.+....++|+|++..++++.+.+| .|++||+... ....+..+.......+|+|++
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g----------------------~~~~lt~~~~~~~~~~~spDG 303 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR----------------------QLTRLTNHFGIDTEPTWAPDG 303 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC----------------------CeEECccCCCCccceEECCCC
Confidence 4555667899999966666666666 5888888651 123344454455678999999
Q ss_pred CCeEEEEe-CCCc--EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-C--cEEEEECCCCCCeeEE
Q 018322 242 TGRLVTGD-CNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-G--HIAIWDTRVGKSALTS 315 (358)
Q Consensus 242 ~~~l~sgs-~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g--~I~iwD~r~~~~~~~~ 315 (358)
. +|+.++ .+|. |+++++..+ .. ..+..+......++|+|++. .++..+.+ + .|.+||+.++. ...
T Consensus 304 ~-~l~f~sd~~g~~~iy~~dl~~g-~~----~~lt~~g~~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g~--~~~ 374 (433)
T PRK04922 304 K-SIYFTSDRGGRPQIYRVAASGG-SA----ERLTFQGNYNARASVSPDGK-KIAMVHGSGGQYRIAVMDLSTGS--VRT 374 (433)
T ss_pred C-EEEEEECCCCCceEEEEECCCC-Ce----EEeecCCCCccCEEECCCCC-EEEEEECCCCceeEEEEECCCCC--eEE
Confidence 8 666555 4555 556666442 21 11222223345689999999 55554433 2 69999997743 223
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeC---CCCEEEEeCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSD---DGTFSIHDLRL 352 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~---Dg~i~iwDlr~ 352 (358)
+. +........|+|++ .+|+..+. .+.|.++++..
T Consensus 375 Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 375 LT-PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CC-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCC
Confidence 33 33344567999999 55554443 23678888854
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.14 E-value=7.1e-09 Score=99.36 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=105.3
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCC---CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADT---GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+...+...+|+|++ ..||..+.. ..|++||+... .. ..+..+.....+++|+
T Consensus 186 ~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g---------------------~~-~~~~~~~~~~~~~~~s 242 (417)
T TIGR02800 186 TRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATG---------------------QR-EKVASFPGMNGAPAFS 242 (417)
T ss_pred ecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCC---------------------CE-EEeecCCCCccceEEC
Confidence 3566778899999999 455554433 47999998761 11 2233344556779999
Q ss_pred CCCCCeEEEEeCCC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-CC--cEEEEECCCCCCee
Q 018322 239 PITTGRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DG--HIAIWDTRVGKSAL 313 (358)
Q Consensus 239 ~~~~~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg--~I~iwD~r~~~~~~ 313 (358)
|++..++++.+.++ .|++|++.++.. ..+..+.......+|+|++. .|+.++. .+ .|.++|+..+. .
T Consensus 243 pDg~~l~~~~~~~~~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~s~dg~-~l~~~s~~~g~~~iy~~d~~~~~--~ 314 (417)
T TIGR02800 243 PDGSKLAVSLSKDGNPDIYVMDLDGKQL-----TRLTNGPGIDTEPSWSPDGK-SIAFTSDRGGSPQIYMMDADGGE--V 314 (417)
T ss_pred CCCCEEEEEECCCCCccEEEEECCCCCE-----EECCCCCCCCCCEEECCCCC-EEEEEECCCCCceEEEEECCCCC--E
Confidence 99983444555554 588888866322 22333444455678999998 5554443 44 57777877642 3
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCC---CEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDG---TFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg---~i~iwDlr~~~ 354 (358)
..+..+...+..+.|+|++ .+|+.++.++ .|.+||+.+..
T Consensus 315 ~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 315 RRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred EEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCC
Confidence 4454456667788999999 6776666654 78899987643
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=4.4e-10 Score=99.26 Aligned_cols=190 Identities=15% Similarity=0.149 Sum_probs=125.8
Q ss_pred CCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCC--------------CCCCCCCcEEE-cC
Q 018322 164 HQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAP--------------QVSNQSPLVKF-GG 227 (358)
Q Consensus 164 H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~-~~ 227 (358)
-...|+.|+|.+++ ...+...+.|.+|++|-+................... ......|...+ .+
T Consensus 83 ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa 162 (433)
T KOG1354|consen 83 IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA 162 (433)
T ss_pred hhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc
Confidence 45779999999876 3456667899999999997644333111110000000 00122333333 35
Q ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc--ccCC--CccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW--NVDP--NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~--~~~~--~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
|.--|.+|.++.+.. .++|++ |-.|.||.+.-..+. ++.+ ..+..-+.-|++..|+|...++|+-.+..|+|+|
T Consensus 163 HtyhiNSIS~NsD~E-t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 163 HTYHINSISVNSDKE-TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ceeEeeeeeecCccc-eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 777899999999998 888887 889999998643221 1111 1222234568888999999999999999999999
Q ss_pred EECCCCCCeeE-----EE----------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 304 WDTRVGKSALT-----SF----------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 304 wD~r~~~~~~~-----~~----------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
.|+|...-|-. .. ..--+.|..+.|++.| ++|++-+. -+|++||+..-.+|+
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~~pv 307 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEAKPV 307 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccccCCcc
Confidence 99996321111 00 1111357889999999 89988654 589999997766654
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=1.6e-09 Score=107.63 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=100.6
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
++.+|.|.|.++.++-++ .++|+.|+|.++++|.+... .....+.-+|...++.+.+.|
T Consensus 170 ~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~--------------------~~~~~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSR--------------------EVLGCTGFGHSARVWACCFLP 228 (967)
T ss_pred eecccCCceEEEEEccCC-cEEEEEecCcceeeeecccc--------------------cccCcccccccceeEEEEecc
Confidence 778999999999999999 89999999999999999882 222245669999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCC-CcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
. +++|++.|.+.++|+..- .. ...+.+|. ..+..+...+... ..+|++.||.+++||+..
T Consensus 229 n---~i~t~gedctcrvW~~~~-~~----l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 229 N---RIITVGEDCTCRVWGVNG-TQ----LEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c---eeEEeccceEEEEEeccc-ce----ehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence 6 899999999999997643 22 23677775 4688999988877 999999999999999854
No 241
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.08 E-value=3.4e-09 Score=95.46 Aligned_cols=165 Identities=21% Similarity=0.214 Sum_probs=114.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
..++.+..++.+ .++|.+.......++++..... ..+++..+.... .-+++.+..... ..
T Consensus 63 ~a~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~-----------------~~kl~~~~~v~~-~~~ai~~~~~~~-sv 122 (390)
T KOG3914|consen 63 LAPALVLTSDSG-RLVAVATSSKQRAVFDYRENPK-----------------GAKLLDVSCVPK-RPTAISFIREDT-SV 122 (390)
T ss_pred ccccccccCCCc-eEEEEEeCCCceEEEEEecCCC-----------------cceeeeEeeccc-Ccceeeeeeccc-eE
Confidence 344455666767 7999988888888888876221 022233332222 334555555554 45
Q ss_pred EEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-ecCCCCeE
Q 018322 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNADVN 324 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~ 324 (358)
..+...|-++.+|+.+...+. .....||-+.+++|+|+|+.+ +++++..|..|||-..... ..+..+ -+|..-|.
T Consensus 123 ~v~dkagD~~~~di~s~~~~~--~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~-f~IesfclGH~eFVS 198 (390)
T KOG3914|consen 123 LVADKAGDVYSFDILSADSGR--CEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPAT-FVIESFCLGHKEFVS 198 (390)
T ss_pred EEEeecCCceeeeeecccccC--cchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcc-cchhhhccccHhhee
Confidence 555555555555544322112 367889999999999999998 9999999999999776653 234444 67999999
Q ss_pred EEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 325 VISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
.++.-++. .|+|||.|++|++||+++++..
T Consensus 199 ~isl~~~~--~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 199 TISLTDNY--LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eeeeccCc--eeeecCCCCcEEEEecccCCcc
Confidence 99998765 6899999999999999998754
No 242
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=6.2e-09 Score=101.91 Aligned_cols=167 Identities=14% Similarity=0.181 Sum_probs=127.2
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
..|...+++.+++|.+ .++|+|..||+|.+|.-..... .......+.-|..+|.+|+|+++|
T Consensus 202 ~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~-----------------~~~t~t~lHWH~~~V~~L~fS~~G 263 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSD-----------------DSETCTLLHWHHDEVNSLSFSSDG 263 (792)
T ss_pred hhhcccceeEEecccc-ceEEEeccCCcEEEEecccccc-----------------ccccceEEEecccccceeEEecCC
Confidence 3477779999999999 8999999999999997543100 123345678899999999999999
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC--CeeEEEe--
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SALTSFK-- 317 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~~~~~~~-- 317 (358)
. +|+||+..|.+.+|.+.++++ +-+..-.++|..+.|+|++. +.+.+..|..|.+....+.. ..+..+.
T Consensus 264 ~-~LlSGG~E~VLv~Wq~~T~~k-----qfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~ 336 (792)
T KOG1963|consen 264 A-YLLSGGREGVLVLWQLETGKK-----QFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPP 336 (792)
T ss_pred c-eEeecccceEEEEEeecCCCc-----ccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCC
Confidence 8 999999999999999988553 23444578999999999998 88888889999998764321 1111111
Q ss_pred ------cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 318 ------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 318 ------~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
...+-.+.++++|.- ..++-.+..|.|.+||+-+-+
T Consensus 337 ~~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 337 TPSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred CccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccc
Confidence 123446778899955 677888899999999987643
No 243
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.05 E-value=1.1e-09 Score=113.80 Aligned_cols=158 Identities=17% Similarity=0.324 Sum_probs=126.0
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc--CCCCCeEEEEeCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~ 241 (358)
|-..|.|+.-+|..+ +.+||+.||.|++|.... .+++..+. |. ..++.+.|+..|
T Consensus 2207 ~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~---------------------~~~v~~~rt~g~-s~vtr~~f~~qG 2263 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGH---------------------GQQVVCFRTAGN-SRVTRSRFNHQG 2263 (2439)
T ss_pred ccCceeeecCCCCCc-eEEecCCCceEEEEeccC---------------------CCeEEEeeccCc-chhhhhhhcccC
Confidence 446788888888884 778999999999999887 34444443 33 689999999999
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE---CCCcEEEEECCCCCCeeEEEec
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS---VDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s---~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
. .+..+..||.+.+|.+.. +. ....+.|.....++.|-- . ++++++ .++.+.+||.--+........+
T Consensus 2264 n-k~~i~d~dg~l~l~q~~p--k~---~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2264 N-KFGIVDGDGDLSLWQASP--KP---YTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred C-ceeeeccCCceeecccCC--cc---eeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeee
Confidence 7 999999999999999862 21 255677999999999975 3 677765 4789999998764332222288
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|.+.++++++-|.. .+|+|||.+|.|++||+|..+
T Consensus 2335 H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred cCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHH
Confidence 99999999999999 999999999999999998643
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.05 E-value=4.8e-08 Score=93.65 Aligned_cols=156 Identities=14% Similarity=0.200 Sum_probs=96.6
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
.+.+.+..++|+|++..++++.+.++ .|++|++... ....+..+........|+|+
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~----------------------~~~~l~~~~~~~~~~~~s~d 288 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK----------------------QLTRLTNGPGIDTEPSWSPD 288 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC----------------------CEEECCCCCCCCCCEEECCC
Confidence 35667778999999966666666555 4888887651 12233334444456789999
Q ss_pred CCCeEEEEeC-CC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC---cEEEEECCCCCCeeE
Q 018322 241 TTGRLVTGDC-NS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG---HIAIWDTRVGKSALT 314 (358)
Q Consensus 241 ~~~~l~sgs~-dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg---~I~iwD~r~~~~~~~ 314 (358)
+. +|+.++. .+ .|+++++... .. ..+..+...+..+.|+|++. .++.++.++ .|.+||+..+. ..
T Consensus 289 g~-~l~~~s~~~g~~~iy~~d~~~~-~~----~~l~~~~~~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~--~~ 359 (417)
T TIGR02800 289 GK-SIAFTSDRGGSPQIYMMDADGG-EV----RRLTFRGGYNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGG--ER 359 (417)
T ss_pred CC-EEEEEECCCCCceEEEEECCCC-CE----EEeecCCCCccCeEECCCCC-EEEEEEccCCceEEEEEeCCCCC--eE
Confidence 98 6665543 34 5777777653 21 22333455677889999998 676666665 78889988743 22
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeC-CC--CEEEEeCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSD-DG--TFSIHDLR 351 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~-Dg--~i~iwDlr 351 (358)
.+... .......|+|++ ..|+..+. ++ .+.+.+..
T Consensus 360 ~l~~~-~~~~~p~~spdg-~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 360 VLTDT-GLDESPSFAPNG-RMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EccCC-CCCCCceECCCC-CEEEEEEeCCCcEEEEEEECC
Confidence 23222 234456899999 55555444 33 35555543
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=7e-08 Score=92.65 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=97.5
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCC--c--EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTG--H--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg--~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
..+.....+|+|+|..++.+...+| . +.+|++.... ...+.....++.......+|+|
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~------------------~g~~~~lt~~~~~~~~~p~wSP 290 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA------------------IGKPRRLLNEAFGTQGNPSFSP 290 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC------------------CCcceEeecCCCCCcCCeEECC
Confidence 4555667899999965555554434 2 3335554310 0122233333333445789999
Q ss_pred CCCCeEEEEe-CCCcEEEEec--CCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-C--CcEEEEECCCCCCee
Q 018322 240 ITTGRLVTGD-CNSCIYLWEP--ASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-D--GHIAIWDTRVGKSAL 313 (358)
Q Consensus 240 ~~~~~l~sgs-~dg~I~lwd~--~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-D--g~I~iwD~r~~~~~~ 313 (358)
+|. .|+..+ .+|...||.+ ...+.. ...+..+...+....|+|++. .|+.++. + ..|.+||+.++. .
T Consensus 291 DG~-~Laf~s~~~g~~~ly~~~~~~~g~~---~~~lt~~~~~~~~p~wSPDG~-~Laf~~~~~g~~~I~v~dl~~g~--~ 363 (428)
T PRK01029 291 DGT-RLVFVSNKDGRPRIYIMQIDPEGQS---PRLLTKKYRNSSCPAWSPDGK-KIAFCSVIKGVRQICVYDLATGR--D 363 (428)
T ss_pred CCC-EEEEEECCCCCceEEEEECcccccc---eEEeccCCCCccceeECCCCC-EEEEEEcCCCCcEEEEEECCCCC--e
Confidence 998 666544 5676556644 321211 123334445677889999999 5655544 3 368999998753 2
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeC--CCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSD--DGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~--Dg~i~iwDlr~~~ 354 (358)
..+......+....|+|++..+++++.. ...|.+||+...+
T Consensus 364 ~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 364 YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 3343333456789999999444445443 3468888987654
No 246
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.03 E-value=8.3e-10 Score=94.14 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=102.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeC-----CCc
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC-----NSC 253 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~-----dg~ 253 (358)
+-++++..||.+.+++......... ..+.. |. .-.+.+....+. .+.++.+ -+.
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~~~---------------~i~~~----~~-~~as~~~~~~~~-~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLALMS---------------RIPSI----HS-GSASRKICRHGN-SILSGGCGNWNAQDN 160 (319)
T ss_pred CceEecCCCceEEEEechHHHhhhh---------------hcccc----cc-cccccceeeccc-EEecCCcceEeeccc
Confidence 4689999999999999877221110 11111 11 111222333333 3333322 234
Q ss_pred EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCC
Q 018322 254 IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLAS 333 (358)
Q Consensus 254 I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~ 333 (358)
.+.|+++..+....... ....|.+++-+|...+++++|+.||.+.+||.|....++..+.+|..+|+.+-|+|..+
T Consensus 161 ~~a~~~~p~~t~~~~~~----~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKK----ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred eeeeccccccccccccc----ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence 56677655333221111 12349999999999889999999999999999997667777899999999999999988
Q ss_pred cEEEEEeCCCCEEEEeCCC
Q 018322 334 CLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 334 ~~lasgs~Dg~i~iwDlr~ 352 (358)
..|++++.||.+-.||..+
T Consensus 237 ~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hheeEecCCCcEEEEcCCC
Confidence 9999999999999999863
No 247
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.03 E-value=5.6e-10 Score=107.17 Aligned_cols=165 Identities=24% Similarity=0.371 Sum_probs=128.1
Q ss_pred CceeEEEEcCCC--CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 166 GCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 166 ~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-.|-.+.|+|+. +..+++.+.. .-.||++.... .....+.+.||...++.+.|+|+.+.
T Consensus 68 w~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ss------------------~~aIef~lhghsraitd~n~~~q~pd 128 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKSS------------------SNAIEFVLHGHSRAITDINFNPQHPD 128 (1081)
T ss_pred chhcceecccCCCCceeEEecCcc-hhhhhhhhcCC------------------ccceEEEEecCccceeccccCCCCCc
Confidence 345566777654 5556665554 45689987621 13344678899999999999999988
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.|++++.|..++.||+++..... ..+..-...-..|+|+...++++| .+....|++||+|.+..++..+++|-..|
T Consensus 129 Vlatcsvdt~vh~wd~rSp~~p~---ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~v 204 (1081)
T KOG0309|consen 129 VLATCSVDTYVHAWDMRSPHRPF---YSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSV 204 (1081)
T ss_pred ceeeccccccceeeeccCCCcce---eeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceee
Confidence 99999999999999999865543 223333345677999998885555 45568899999999888999999999999
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+.+.|+..-...+.+++.||+|+.||..+-
T Consensus 205 n~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 205 NSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred ehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 999999876578899999999999998653
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=6.4e-08 Score=93.26 Aligned_cols=164 Identities=15% Similarity=0.116 Sum_probs=99.3
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCC--CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
+..+...+...+|+|++..++.+...+ ..|.+|++... .. ..+........+..|+
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g---------------------~~-~~l~~~~g~~~~~~~S 251 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG---------------------RR-EQITNFEGLNGAPAWS 251 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC---------------------CE-EEccCCCCCcCCeEEC
Confidence 335677899999999995444443333 35888898752 11 1222222334578999
Q ss_pred CCCCCeEE-EEeCCC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC--cEEEEECCCCCCee
Q 018322 239 PITTGRLV-TGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--HIAIWDTRVGKSAL 313 (358)
Q Consensus 239 ~~~~~~l~-sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--~I~iwD~r~~~~~~ 313 (358)
|++. +|+ +.+.+| .|++||+.++.. ..+..+........|+|++..++++...+| .|.++|+..+. .
T Consensus 252 pDG~-~la~~~~~~g~~~Iy~~d~~~~~~-----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~--~ 323 (430)
T PRK00178 252 PDGS-KLAFVLSKDGNPEIYVMDLASRQL-----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR--A 323 (430)
T ss_pred CCCC-EEEEEEccCCCceEEEEECCCCCe-----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC--E
Confidence 9998 665 555555 588888876322 223444555667899999984444443444 46667776643 2
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEe-CCC--CEEEEeCCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGS-DDG--TFSIHDLRLLKV 355 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs-~Dg--~i~iwDlr~~~~ 355 (358)
..+...........|+|++ ..|+..+ .++ .|.+||+.+.+.
T Consensus 324 ~~lt~~~~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 324 ERVTFVGNYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred EEeecCCCCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE
Confidence 2232222233457899999 5555444 344 578889877543
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.02 E-value=2.1e-08 Score=88.82 Aligned_cols=142 Identities=21% Similarity=0.395 Sum_probs=97.7
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccc-----------ccc---CCCCC-------CCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESET-----------IVG---QGAPQ-------VSN 218 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~-----------~~~---~~~~~-------~~~ 218 (358)
....|.+.|.++-|+-.. ..+++.+.|..+. |-.....+.+..... ... ....+ ...
T Consensus 109 ~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~ 186 (404)
T KOG1409|consen 109 DYLAHQARVSAIVFSLTH-EWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNG 186 (404)
T ss_pred hhhhhhcceeeEEecCCc-eeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecC
Confidence 345688999999888766 5666666665543 332221111100000 000 00000 134
Q ss_pred CCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC
Q 018322 219 QSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (358)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (358)
..++.++.+|.+++++++|.+... +|.+|..|..|.+||+--... . .....+|...|..++.-+.-. .+.+|+.|
T Consensus 187 ~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g-~--~~el~gh~~kV~~l~~~~~t~-~l~S~~ed 261 (404)
T KOG1409|consen 187 CQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKG-T--AYELQGHNDKVQALSYAQHTR-QLISCGED 261 (404)
T ss_pred CceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcc-e--eeeeccchhhhhhhhhhhhhe-eeeeccCC
Confidence 567788999999999999999887 999999999999999954222 1 355778999999998877766 89999999
Q ss_pred CcEEEEECCC
Q 018322 299 GHIAIWDTRV 308 (358)
Q Consensus 299 g~I~iwD~r~ 308 (358)
|.|.+|++..
T Consensus 262 g~i~~w~mn~ 271 (404)
T KOG1409|consen 262 GGIVVWNMNV 271 (404)
T ss_pred CeEEEEeccc
Confidence 9999999853
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=1.2e-07 Score=91.63 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=96.9
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
..+...+...+|+|++..++.+...++ .|++||+... .. ..+........+..|+|
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg---------------------~~-~~lt~~~g~~~~~~wSP 271 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ---------------------VR-EKVTSFPGINGAPRFSP 271 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC---------------------Ce-EEecCCCCCcCCeeECC
Confidence 456778999999999954444444444 5788887651 21 11211122334789999
Q ss_pred CCCCeEEEEeCCCc--EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCc--EEEEECCCCCCeeEE
Q 018322 240 ITTGRLVTGDCNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH--IAIWDTRVGKSALTS 315 (358)
Q Consensus 240 ~~~~~l~sgs~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~--I~iwD~r~~~~~~~~ 315 (358)
++..++++.+.+|. |++||+.++ .. ..+..+.......+|+|++..++++...++. |.++|+.++. ...
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg-~~----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~ 344 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATK-AL----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSR 344 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCC-Ce----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEE
Confidence 99833345666675 777787653 21 2333445556778999999855555544554 5556776543 233
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCC--EEEEeCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGT--FSIHDLRLLK 354 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~--i~iwDlr~~~ 354 (358)
+..+.......+|+|++..++++...++. |.++|+.+.+
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 32233334457999999444444444554 5556776654
No 251
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=1.8e-09 Score=100.79 Aligned_cols=179 Identities=17% Similarity=0.230 Sum_probs=126.5
Q ss_pred CeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
.+-...+.+|+..|..|...... +-+++++.|.+|++|.+........ +..+.+++..|+.+|.+
T Consensus 725 ~irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~--------------tsaCQfTY~aHkk~i~~ 789 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIG--------------TSACQFTYQAHKKPIHD 789 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccc--------------cceeeeEhhhccCcccc
Confidence 34446778899999888776655 6788999999999999987433221 34577889999999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC--CCCEEEEEECCCcEEEEECCCCCC-
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT--EPDVFASCSVDGHIAIWDTRVGKS- 311 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--~~~~las~s~Dg~I~iwD~r~~~~- 311 (358)
+.|-.+.. +++ ++||.|++||.--+.... . .......+.+..+..-|+ ..-++|.|+...+|+++|.|....
T Consensus 790 igfL~~lr-~i~--ScD~giHlWDPFigr~La-q-~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~ 864 (1034)
T KOG4190|consen 790 IGFLADLR-SIA--SCDGGIHLWDPFIGRLLA-Q-MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT 864 (1034)
T ss_pred eeeeeccc-eee--eccCcceeecccccchhH-h-hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce
Confidence 99988765 554 568999999986532211 0 011112233333333333 333566668999999999998542
Q ss_pred eeEEE---ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 312 ALTSF---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 312 ~~~~~---~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+-..+ .+.+..+.+|+..+.| +.+|.|-.+|.|.+.|.|+++
T Consensus 865 ~E~kVcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 865 CELKVCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred eeEEeccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCc
Confidence 22222 2344668999999999 899999999999999999986
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.4e-08 Score=95.68 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=98.2
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
.+|-+.|.++.|+..-. .|.|++.|+.+..|+...... .+.+.+.+..+.+++.+|++. .+++++ +.|++||
T Consensus 99 ~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~----~~~~~~~~~~~~sl~is~D~~-~l~~as--~~ik~~~ 170 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVI----IRIWKEQKPLVSSLCISPDGK-ILLTAS--RQIKVLD 170 (541)
T ss_pred CCCCCcceeeecccccC-ceEecCCceeEEEEeccccee----eeeeccCCCccceEEEcCCCC-EEEecc--ceEEEEE
Confidence 46788999999988775 999999999999999977322 356777888999999999998 888777 6899999
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCC-----CCcEEEEEeCCCCEEEEeCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRL-----ASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~-----~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+.+ +..+..+.+|.++|++++|.-. |.++|.+...+.-+.+|-++.
T Consensus 171 ~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 171 IET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999 4688899999999999999877 546666666777888887765
No 253
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.96 E-value=1.5e-08 Score=89.31 Aligned_cols=160 Identities=16% Similarity=0.247 Sum_probs=108.7
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
+|-.......-..++..++|+|+|..++.+..-+-.|.+|.+.+ +....+..-+..+.
T Consensus 80 Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t----------------------~~~~~~~~pK~~~k 137 (447)
T KOG4497|consen 80 QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT----------------------QKGYLLPHPKTNVK 137 (447)
T ss_pred cceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc----------------------ceeEEecccccCce
Confidence 45555555566788999999999988999999999999999987 22223333344567
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
.++|+|++. +.+.++.--..-..++..-..|.. .+.+.-.+...++|.|+|+|. .+ .+||.--. -.+
T Consensus 138 g~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~l-l~~f~~dT~DltgieWsPdg~-~l---------aVwd~~Le-ykv 204 (447)
T KOG4497|consen 138 GYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWIL-LKEFKLDTIDLTGIEWSPDGN-WL---------AVWDNVLE-YKV 204 (447)
T ss_pred eEEECCCCc-eeeeeecccHHHHHHHHhhHHHHH-HHhcCCCcccccCceECCCCc-EE---------EEecchhh-hee
Confidence 899999998 777776542222222322122221 234555667788999999997 44 46775431 122
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
..+ .-+-.+..++|+|.+ ++|+.|+.|+.++|-+-
T Consensus 205 ~aY-e~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 205 YAY-ERGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNH 239 (447)
T ss_pred eee-eeccceeEEEecccc-ceEEeeccchhhhhhce
Confidence 222 123468899999999 99999999999988654
No 254
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.95 E-value=9.1e-08 Score=82.25 Aligned_cols=149 Identities=13% Similarity=0.060 Sum_probs=106.4
Q ss_pred EEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC--CeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 181 CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 181 lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
+..++.|.++++.++..... +. ..|.. ...+++.++++. ++++.+....|.+|.
T Consensus 131 ~~i~sndht~k~~~~~~~s~-------------------~~----~~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~ 186 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSN-------------------KF----AVHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYA 186 (344)
T ss_pred eeeccCCcceeEEEEecCcc-------------------cc----eeeccccceeeeEEcCCCc-eEEEecCCCcceEEE
Confidence 44557888888888876321 11 11222 377899999998 999999899999999
Q ss_pred cCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE----ecCCCCeEEEEEeCCCCc
Q 018322 259 PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF----KAHNADVNVISWNRLASC 334 (358)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~----~~h~~~V~~i~~~p~~~~ 334 (358)
+...+..... .....-+..-.+.+|+.... .||++..||++.|||+|....++... ..|++.+..+.|++.|.-
T Consensus 187 id~~sey~~~-~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l 264 (344)
T KOG4532|consen 187 IDDESEYIEN-IYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL 264 (344)
T ss_pred eCCccceeee-eEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc
Confidence 9875554321 11222334445678998877 99999999999999999876666544 458999999999986632
Q ss_pred -EEEEEeCCCCEEEEeCCCCCC
Q 018322 335 -LLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 335 -~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+|.-.-.=+.+.+-|+|+++.
T Consensus 265 DLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 265 DLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred eEEEEecCcceEEEEEcccCce
Confidence 333333457899999998763
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=2.7e-07 Score=89.18 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=88.9
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCc--EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADTGH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
+......|+|++..++++.+.+|. |+++|+.. .....+..+.......+|+|++.
T Consensus 262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t----------------------g~~~~lt~~~~~~~~p~wSpDG~- 318 (448)
T PRK04792 262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT----------------------KALTRITRHRAIDTEPSWHPDGK- 318 (448)
T ss_pred CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC----------------------CCeEECccCCCCccceEECCCCC-
Confidence 344578999999666667777776 66667654 12233444444567789999998
Q ss_pred eEE-EEeCCCc--EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCc--EEEEECCCCCCeeEEEec
Q 018322 244 RLV-TGDCNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH--IAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 244 ~l~-sgs~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~--I~iwD~r~~~~~~~~~~~ 318 (358)
.|+ +...++. |+++++.++ .... ..+.+ ......+|+|++..++++...++. |.++|+.++. ...+..
T Consensus 319 ~I~f~s~~~g~~~Iy~~dl~~g-~~~~--Lt~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~ 391 (448)
T PRK04792 319 SLIFTSERGGKPQIYRVNLASG-KVSR--LTFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA--MQVLTS 391 (448)
T ss_pred EEEEEECCCCCceEEEEECCCC-CEEE--EecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC--eEEccC
Confidence 554 4444444 555566542 2211 11222 223456899999944444444554 4556776643 222322
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCC--EEEEeCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGT--FSIHDLR 351 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~--i~iwDlr 351 (358)
.. ......|+|++..++++...+|. +.++++.
T Consensus 392 ~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 392 TR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CC-CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 21 22345899999555555555554 6677764
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.84 E-value=3.6e-07 Score=86.29 Aligned_cols=121 Identities=18% Similarity=0.168 Sum_probs=101.6
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
...-.|.+.|+++.++.+- ..|-+++.|+.+..|+... .+....+.+....+.+++.+
T Consensus 96 ~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~---------------------~~~~~~~~~~~~~~~sl~is 153 (541)
T KOG4547|consen 96 LSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKE---------------------KVIIRIWKEQKPLVSSLCIS 153 (541)
T ss_pred EecCCCCCcceeeeccccc-CceEecCCceeEEEEeccc---------------------ceeeeeeccCCCccceEEEc
Confidence 3445799999999988877 6899999999999999987 46667777888889999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC-----CCCEEEEEECCCcEEEEECCC
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT-----EPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-----~~~~las~s~Dg~I~iwD~r~ 308 (358)
|++. .|++|+ +.|.+||+.+... ...|.||.++|.+++|--. |.++|.+...+..|.+|-++.
T Consensus 154 ~D~~-~l~~as--~~ik~~~~~~kev----v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 154 PDGK-ILLTAS--RQIKVLDIETKEV----VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCC-EEEecc--ceEEEEEccCceE----EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9987 999887 7899999987433 3689999999999999776 666777777788899997765
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=7.1e-07 Score=86.02 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=90.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.+.+...+|+|++..++.+.+.+| .|++||+.. .....+..+........|+|++.
T Consensus 242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~----------------------~~~~~lt~~~~~~~~~~~spDg~ 299 (430)
T PRK00178 242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS----------------------RQLSRVTNHPAIDTEPFWGKDGR 299 (430)
T ss_pred CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC----------------------CCeEEcccCCCCcCCeEECCCCC
Confidence 344557899999965655666666 577778765 12233444445566789999998
Q ss_pred CeEEEEe-CCC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-CC--cEEEEECCCCCCeeEEE
Q 018322 243 GRLVTGD-CNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DG--HIAIWDTRVGKSALTSF 316 (358)
Q Consensus 243 ~~l~sgs-~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg--~I~iwD~r~~~~~~~~~ 316 (358)
.|+..+ .+| .|+++++.++. ... ..+.+ .......|+|++. .++..+. ++ .|.+||+.++.. ..+
T Consensus 300 -~i~f~s~~~g~~~iy~~d~~~g~-~~~--lt~~~--~~~~~~~~Spdg~-~i~~~~~~~~~~~l~~~dl~tg~~--~~l 370 (430)
T PRK00178 300 -TLYFTSDRGGKPQIYKVNVNGGR-AER--VTFVG--NYNARPRLSADGK-TLVMVHRQDGNFHVAAQDLQRGSV--RIL 370 (430)
T ss_pred -EEEEEECCCCCceEEEEECCCCC-EEE--eecCC--CCccceEECCCCC-EEEEEEccCCceEEEEEECCCCCE--EEc
Confidence 555444 444 57777775532 211 11111 2234568999999 5555443 43 578889887532 223
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCC--CEEEEeCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRL 352 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg--~i~iwDlr~ 352 (358)
. +........|+|+|..++++....| .|.++++..
T Consensus 371 t-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 371 T-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred c-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 2 1222235689999944444444443 466677643
No 258
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.82 E-value=1.9e-08 Score=88.08 Aligned_cols=189 Identities=15% Similarity=0.193 Sum_probs=120.9
Q ss_pred CCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCcccccccccc------ccCCC---------------CCCCCCCCc
Q 018322 165 QGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETI------VGQGA---------------PQVSNQSPL 222 (358)
Q Consensus 165 ~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~------~~~~~---------------~~~~~~~~~ 222 (358)
...|+.|+|...+ ...+...+.|.+|+||.+....-.+-..... ...+. .......|.
T Consensus 85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~ 164 (460)
T COG5170 85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC 164 (460)
T ss_pred HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccc
Confidence 4567888887544 3345555789999999987631111100000 00000 000112233
Q ss_pred EEE-cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc--ccCC--CccccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 223 VKF-GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW--NVDP--NPFIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 223 ~~~-~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~--~~~~--~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
..+ ..|..-+.++.++.+.. .+++++ |-.|.+|++.-.... ++.+ ..+..-+.-|++..|+|...++|+-.+.
T Consensus 165 rvyaNaH~yhiNSiS~NsD~e-t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 165 RVYANAHPYHINSISFNSDKE-TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred eeccccceeEeeeeeecCchh-eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 333 45777888999999987 788876 889999998653221 1111 1122224568889999999889999999
Q ss_pred CCcEEEEECCCCCCeeE-------EE--------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 298 DGHIAIWDTRVGKSALT-------SF--------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~-------~~--------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
.|.|++-|+|...-|.. .+ ..-.+.|..+.|+++| ++|++-+. -+|+|||.++-+.|+
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k~pi 315 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAKNPI 315 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccccCCc
Confidence 99999999996321111 01 1112457888999999 89988765 589999999988775
No 259
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=2.2e-08 Score=88.72 Aligned_cols=123 Identities=17% Similarity=0.165 Sum_probs=91.1
Q ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC-CCCCEEEEEECCCcEEEEEC
Q 018322 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD~ 306 (358)
.++.|+++.|...++ ++..|..+|.|...|++...+-..-.....-|.++|++++.-. .++ .|++.+.+|+|++||+
T Consensus 251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q-~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQ-KLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccc-eEeeccCcCceeEeee
Confidence 345789999998887 9999999999999999875221111133445899999998766 445 8999999999999999
Q ss_pred CCCCCe---eEEEecCCCCeEEE--EEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 307 RVGKSA---LTSFKAHNADVNVI--SWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 307 r~~~~~---~~~~~~h~~~V~~i--~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|.- ++ +.++.+|-..-.-+ ..++.. ..++++|+|...+||.++.+.
T Consensus 329 R~~-K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 329 RAT-KCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhh-hcccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCc
Confidence 984 34 66677774432222 233444 688889999999999998653
No 260
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.74 E-value=2.3e-07 Score=82.34 Aligned_cols=169 Identities=18% Similarity=0.296 Sum_probs=123.7
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
.+.++.++.+.+.. ..|.+|-..|++.-+.+...-++. ........|...+..+-|+-...
T Consensus 67 mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfnkm-----------------~~~r~~~~h~~~v~~~if~~~~e- 127 (404)
T KOG1409|consen 67 MPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFNKM-----------------TFLKDYLAHQARVSAIVFSLTHE- 127 (404)
T ss_pred CCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhhhc-----------------chhhhhhhhhcceeeEEecCCce-
Confidence 35788889998887 789999999999988876643322 33344455666666666665555
Q ss_pred eEEEEeCCCcEEEEecCCCC--------------------------------------CcccCCCccccCCCcEEEEEEC
Q 018322 244 RLVTGDCNSCIYLWEPASDA--------------------------------------TWNVDPNPFIGHSASVEDLQWS 285 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~--------------------------------------~~~~~~~~~~~h~~~V~~v~~s 285 (358)
.+++.+.|..+. |-....+ ........+.+|...+.+++|.
T Consensus 128 ~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd 206 (404)
T KOG1409|consen 128 WVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD 206 (404)
T ss_pred eEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc
Confidence 566665554432 2221110 0011124567899999999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|... ++.+|..|..|.+||+.-.+.....+.+|...|..+..-+.. ..+.+++.||.|.+|++...+
T Consensus 207 ~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 207 PGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred CCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 9888 999999999999999987555667778999999998888777 889999999999999997643
No 261
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=2.1e-08 Score=92.39 Aligned_cols=173 Identities=18% Similarity=0.189 Sum_probs=120.5
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 246 (358)
..+.|+..|.+++.+|+|+.|-.+++||.+.....-... .. ...-|..........|+|++++..+. -|+
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~-~~--------~~f~p~hl~~d~~v~ITgl~Ysh~~s-ElL 352 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG-VL--------DKFCPHHLVEDDPVNITGLVYSHDGS-ELL 352 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccc-hh--------hhcCCccccccCcccceeEEecCCcc-cee
Confidence 678899999998899999999999999987732111000 00 00111111112234799999998876 666
Q ss_pred EEeCCCcEEEEecCCCCC--c-------ccCCCccccCCC--cEEEEEE-CCCCCCEEEEEECCCcEEEEECCCCCCeeE
Q 018322 247 TGDCNSCIYLWEPASDAT--W-------NVDPNPFIGHSA--SVEDLQW-SPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 247 sgs~dg~I~lwd~~~~~~--~-------~~~~~~~~~h~~--~V~~v~~-sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
++-.|-.|+|+.-..+.. . ....+.|+||.. .|-.+-| -|... ++++||+=|.|.||+-.++ ..+.
T Consensus 353 aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~-eii~ 430 (559)
T KOG1334|consen 353 ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTG-EIIR 430 (559)
T ss_pred eeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecchh-HHHH
Confidence 777788999995432111 0 111233788864 4666655 56666 9999999999999998874 4555
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+.+...-||||.=+|.- .+|||+|-|.-|+||-.-.
T Consensus 431 ~MegDr~VVNCLEpHP~~-PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 431 FMEGDRHVVNCLEPHPHL-PVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred HhhcccceEeccCCCCCC-chhhccCCccceeeecCCc
Confidence 556666689999999999 8999999999999997633
No 262
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=1.9e-07 Score=91.07 Aligned_cols=157 Identities=13% Similarity=0.179 Sum_probs=111.0
Q ss_pred CCeEEEEEec-------CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc
Q 018322 154 TPILQLRKVA-------HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (358)
Q Consensus 154 ~~~~~~~~~~-------H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
+|++....+. ....+.|+.++. .+||-|+..|.|++++... .+ .+..
T Consensus 21 ePklkY~Ri~n~~~~~~~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~----------------------~~-~~~~ 74 (846)
T KOG2066|consen 21 EPKLKYERISNLVKNFLQNDAISCCAVHD---KFFALGTHRGAVYLTTCQG----------------------NP-KTNF 74 (846)
T ss_pred CccceehhhhcccHHHHhhhHHHHHHhhc---ceeeeccccceEEEEecCC----------------------cc-cccc
Confidence 6777655443 235666666654 6899999999999999876 33 2233
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC-----CCCEEEEEECCCcE
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT-----EPDVFASCSVDGHI 301 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-----~~~~las~s~Dg~I 301 (358)
.|... ...|. +++||+.||+|.|-.+-+.... .......++.+|+++|+ .+ .|++|+.-| +
T Consensus 75 ~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~-----~~~df~rpiksial~Pd~~~~~sk-~fv~GG~ag-l 140 (846)
T KOG2066|consen 75 DHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI-----TQYDFKRPIKSIALHPDFSRQQSK-QFVSGGMAG-L 140 (846)
T ss_pred ccccc------ccCCc-eEEEecCCCcEEEeeccCCccc-----eeEecCCcceeEEeccchhhhhhh-heeecCcce-E
Confidence 44433 55677 9999999999999888664331 12234578999999998 23 799999999 8
Q ss_pred EEEECCCCCCe-eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 302 AIWDTRVGKSA-LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 302 ~iwD~r~~~~~-~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.++.-+.-+.. -..+..-.++|.+|.|. | .+||=++++| |++||+.+.+
T Consensus 141 vL~er~wlgnk~~v~l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 141 VLSERNWLGNKDSVVLSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQ 190 (846)
T ss_pred EEehhhhhcCccceeeecCccceEEEEec--C-cEEEEecCCC-cEEEeccccc
Confidence 88765542222 12356667899999997 4 7888887776 8999987654
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=1.2e-07 Score=91.32 Aligned_cols=176 Identities=15% Similarity=0.182 Sum_probs=127.5
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
++.....+|+.|+... .++|+|+.||.+++..+.+........+.... .+...-+++.||...|.-+.|+...
T Consensus 11 iPnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~------snLsmNQtLeGH~~sV~vvTWNe~~ 83 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAA------SNLSMNQTLEGHNASVMVVTWNENN 83 (1189)
T ss_pred CCCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccc------cccchhhhhccCcceEEEEEecccc
Confidence 3456788999999877 69999999999999998774333322221111 1233445789999999999999988
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
. .|-|.+.+|.|.+|-+-. +.|... ..-...++-|.+++|+.+|. .++..-.||.|.+=.+... .+..-.-...
T Consensus 84 Q-KLTtSDt~GlIiVWmlyk-gsW~EE-MiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGN--RIwgKeLkg~ 157 (1189)
T KOG2041|consen 84 Q-KLTTSDTSGLIIVWMLYK-GSWCEE-MINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGN--RIWGKELKGQ 157 (1189)
T ss_pred c-cccccCCCceEEEEeeec-ccHHHH-HhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccc--eecchhcchh
Confidence 7 999999999999999976 566421 11122467899999999998 8999999999887666532 2221111122
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
....+.|+++. ..++.+-.+|.++++|..
T Consensus 158 ~l~hv~ws~D~-~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 158 LLAHVLWSEDL-EQALFKKANGETHLYDNQ 186 (1189)
T ss_pred eccceeecccH-HHHHhhhcCCcEEEeccc
Confidence 23467899998 777777788999999874
No 264
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.68 E-value=2.4e-07 Score=81.27 Aligned_cols=166 Identities=20% Similarity=0.244 Sum_probs=116.4
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC-----CCeEEEE
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-----DEGYAID 236 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~ 236 (358)
-.|+-.||+|.++.+.. .+.+ ++|-.|.+|++......+ .+..++.|. .-|++..
T Consensus 169 NaH~yhiNSiS~NsD~e-t~lS-aDdLrINLWnl~i~D~sF------------------nIVDiKP~nmeeLteVItSae 228 (460)
T COG5170 169 NAHPYHINSISFNSDKE-TLLS-ADDLRINLWNLEIIDGSF------------------NIVDIKPHNMEELTEVITSAE 228 (460)
T ss_pred ccceeEeeeeeecCchh-eeee-ccceeeeeccccccCCce------------------EEEeccCccHHHHHHHHhhcc
Confidence 46999999999998884 4444 577899999998732221 112233343 2577889
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCccc------------CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNV------------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~------------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (358)
|+|...+.+.-.+..|.|++-|++....+.. ...-+.+-.++|.+++|+++|+ ++++-+ --+|+||
T Consensus 229 Fhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRd-yltvkiw 306 (460)
T COG5170 229 FHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRD-YLTVKIW 306 (460)
T ss_pred cCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEec-cceEEEE
Confidence 9998776777777899999999985322110 0112334567899999999998 676655 4699999
Q ss_pred ECCCCCCeeEEEecCC------------CCe---EEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 305 DTRVGKSALTSFKAHN------------ADV---NVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 305 D~r~~~~~~~~~~~h~------------~~V---~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
|.+..+.|+.++.-|. ..| ..+.|+-+. ..+++|+......|+-.
T Consensus 307 Dvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 307 DVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeeecc
Confidence 9999888888775553 223 346788777 78888888777777653
No 265
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.67 E-value=9.5e-07 Score=76.10 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=104.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
.+||.|+.-|...+|...+. .........|...|+-+.=.-+....+..++.|.++++.+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn--------------------~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~ 144 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTN--------------------DGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMV 144 (344)
T ss_pred cEEEeccccceeeeecccCc--------------------ccceeeecccccchhhhhhhcccccceeeccCCcceeEEE
Confidence 58999999999999999862 2233333444443332221112222677788888888888
Q ss_pred cCCCCCcccCCCccccCCCc--EEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE--EecCCCCeEEEEEeCCCCc
Q 018322 259 PASDATWNVDPNPFIGHSAS--VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--FKAHNADVNVISWNRLASC 334 (358)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~--~~~h~~~V~~i~~~p~~~~ 334 (358)
+.... ..+..|... +++++.++++. ++++.+....|..|.+......+.. .......=.+.+|+... .
T Consensus 145 ~~~~s------~~~~~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~ 216 (344)
T KOG4532|consen 145 VSGDS------NKFAVHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-L 216 (344)
T ss_pred EecCc------ccceeeccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-c
Confidence 85432 233345443 88899999998 9999999999999998764333322 22333344677999888 8
Q ss_pred EEEEEeCCCCEEEEeCCCCCCCC
Q 018322 335 LLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 335 ~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
.+|++..||++.|||+|....|.
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eEEEEecCCcEEEEEecccccch
Confidence 99999999999999999987663
No 266
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.64 E-value=1.1e-07 Score=58.45 Aligned_cols=38 Identities=37% Similarity=0.735 Sum_probs=35.5
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
+++.++.+|...|++|+|+|++ .+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 3677889999999999999998 9999999999999997
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=2.5e-06 Score=82.01 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=93.6
Q ss_pred CCCceeEEEEcCCCCc--EEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 164 HQGCVNRIRAMTQNPH--ICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~--~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
..+.+..-+|+|+|.. ++.+...+| .|++.++... .. ..+....+......|+|
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g---------------------~~-~~lt~~~g~~~~p~wSP 240 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP---------------------AG-KKILALQGNQLMPTFSP 240 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC---------------------Cc-eEeecCCCCccceEECC
Confidence 4456677799999854 333444444 4666677651 11 12222333455789999
Q ss_pred CCCCeEEEEe-CCC----cEEEEecCCCCCcccCCCccc-cCCCcEEEEEECCCCCCEEEEEE-CCCcEEEEE--CCCCC
Q 018322 240 ITTGRLVTGD-CNS----CIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCS-VDGHIAIWD--TRVGK 310 (358)
Q Consensus 240 ~~~~~l~sgs-~dg----~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD--~r~~~ 310 (358)
+|. +|+..+ .+| .+.+|++..+.... ...+. ++.......+|+|+|. .|+..+ .+|...||. +....
T Consensus 241 DG~-~Laf~s~~~g~~di~~~~~~~~~g~~g~--~~~lt~~~~~~~~~p~wSPDG~-~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 241 RKK-LLAFISDRYGNPDLFIQSFSLETGAIGK--PRRLLNEAFGTQGNPSFSPDGT-RLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred CCC-EEEEEECCCCCcceeEEEeecccCCCCc--ceEeecCCCCCcCCeEECCCCC-EEEEEECCCCCceEEEEECcccc
Confidence 998 665443 233 34446665421100 11222 2223446789999999 555444 567666664 43212
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEe-CC--CCEEEEeCCCCCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGS-DD--GTFSIHDLRLLKV 355 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs-~D--g~i~iwDlr~~~~ 355 (358)
.....+..+...+....|+|+| ..|+..+ .+ ..|.+||+.+++.
T Consensus 317 ~~~~~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred cceEEeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCe
Confidence 2334454455567788999999 6555443 33 3689999976653
No 268
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.63 E-value=1.1e-06 Score=79.63 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=67.3
Q ss_pred EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
.+-||-..++.++|+|+.. ++++++.|..|++-...... . .-.-+.||+.-|..++.-++. .|+|+|.|++|++
T Consensus 146 ~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f--~-IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATF--V-IESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRL 219 (390)
T ss_pred hhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCccc--c-hhhhccccHhheeeeeeccCc--eeeecCCCCcEEE
Confidence 3569999999999999998 99999999999997664321 1 123456899999999988765 5999999999999
Q ss_pred EECCCCC
Q 018322 304 WDTRVGK 310 (358)
Q Consensus 304 wD~r~~~ 310 (358)
||+++++
T Consensus 220 Wd~~sgk 226 (390)
T KOG3914|consen 220 WDITSGK 226 (390)
T ss_pred EecccCC
Confidence 9999965
No 269
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=1.3e-06 Score=85.15 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=125.1
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC-
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT- 242 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~- 242 (358)
|...-+.+.|+|+| +||-|+. ..|.+-|... .+.+..+..|...|+.+.|.|...
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s---------------------~q~iqsie~h~s~V~~VrWap~~~p 69 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRS---------------------LQLIQSIELHQSAVTSVRWAPAPSP 69 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhh---------------------hhhhhccccCccceeEEEeccCCCc
Confidence 44457788999998 8888776 4677778766 577788888999999999987531
Q ss_pred ----------CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC---CCCCEEEEEECCCcEEEEECCCC
Q 018322 243 ----------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP---TEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 243 ----------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp---~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
-+||+++..|.|.+||...... ...+..|..++.+++|-| +.+++++.-....+|.+|+..+|
T Consensus 70 ~~llS~~~~~lliAsaD~~GrIil~d~~~~s~----~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG 145 (1062)
T KOG1912|consen 70 RDLLSPSSSQLLIASADISGRIILVDFVLASV----INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG 145 (1062)
T ss_pred hhccCccccceeEEeccccCcEEEEEehhhhh----hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC
Confidence 1688999999999999977433 256777889999999965 34468888888899999999986
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
..+...........|+.+.|..++.+..-+..|.+.+-+.--.+.
T Consensus 146 -~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~se 190 (1062)
T KOG1912|consen 146 -EKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSE 190 (1062)
T ss_pred -ceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCC
Confidence 466666665666788999998777777667778777766544433
No 270
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.61 E-value=2.5e-07 Score=81.65 Aligned_cols=139 Identities=15% Similarity=0.192 Sum_probs=101.9
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeC
Q 018322 171 IRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC 250 (358)
Q Consensus 171 i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~ 250 (358)
.+|+|.| +++|+.+.- .+.|-|..+ .+..+.|.. -+.|.-|.|..+....|.....
T Consensus 14 c~fSp~g-~yiAs~~~y-rlviRd~~t---------------------lq~~qlf~c-ldki~yieW~ads~~ilC~~yk 69 (447)
T KOG4497|consen 14 CSFSPCG-NYIASLSRY-RLVIRDSET---------------------LQLHQLFLC-LDKIVYIEWKADSCHILCVAYK 69 (447)
T ss_pred eeECCCC-Ceeeeeeee-EEEEeccch---------------------hhHHHHHHH-HHHhhheeeeccceeeeeeeec
Confidence 4789999 799998775 777777665 222222221 3466778999888745666778
Q ss_pred CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeC
Q 018322 251 NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR 330 (358)
Q Consensus 251 dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p 330 (358)
++.|.+|++.. ..|. ..+......+.+++|||+|++++.+...+-.|.+|.+.+.. ...+..-...+..++|+|
T Consensus 70 ~~~vqvwsl~Q-pew~---ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~~~~~~pK~~~kg~~f~~ 143 (447)
T KOG4497|consen 70 DPKVQVWSLVQ-PEWY---CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--GYLLPHPKTNVKGYAFHP 143 (447)
T ss_pred cceEEEEEeec-ceeE---EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--eEEecccccCceeEEECC
Confidence 89999999976 4444 34555678899999999999899999999999999998832 223333344568899999
Q ss_pred CCCcEEEEEe
Q 018322 331 LASCLLASGS 340 (358)
Q Consensus 331 ~~~~~lasgs 340 (358)
+| ++.+.++
T Consensus 144 dg-~f~ai~s 152 (447)
T KOG4497|consen 144 DG-QFCAILS 152 (447)
T ss_pred CC-ceeeeee
Confidence 99 7766654
No 271
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.59 E-value=1.8e-05 Score=74.43 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=100.3
Q ss_pred eEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEE
Q 018322 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (358)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 248 (358)
..+.|+|++ +++.+.+.||.|.++|+.. .+.+..+..- ....+++++++|. +++++
T Consensus 40 ~~~~~s~Dg-r~~yv~~rdg~vsviD~~~---------------------~~~v~~i~~G-~~~~~i~~s~DG~-~~~v~ 95 (369)
T PF02239_consen 40 AGLKFSPDG-RYLYVANRDGTVSVIDLAT---------------------GKVVATIKVG-GNPRGIAVSPDGK-YVYVA 95 (369)
T ss_dssp EEEE-TT-S-SEEEEEETTSEEEEEETTS---------------------SSEEEEEE-S-SEEEEEEE--TTT-EEEEE
T ss_pred eEEEecCCC-CEEEEEcCCCeEEEEECCc---------------------ccEEEEEecC-CCcceEEEcCCCC-EEEEE
Confidence 446789988 5666678899999999988 4555555443 3567899999998 77655
Q ss_pred -eCCCcEEEEecCCCCCcccC-CCcc--ccCCCcEEEEEECCCCCCEEEEEE-CCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 249 -DCNSCIYLWEPASDATWNVD-PNPF--IGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 249 -s~dg~I~lwd~~~~~~~~~~-~~~~--~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
...+.+.++|..+....... .... ....+.+..|..+|..+ .|+..- .-+.|.+.|..................
T Consensus 96 n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~ 174 (369)
T PF02239_consen 96 NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP 174 (369)
T ss_dssp EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EEEEEETTTTEEEEEETTTSSCEEEEEEE--TTE
T ss_pred ecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EEEEEEccCCeEEEEEeccccccceeeecccccc
Confidence 46899999998774321100 0001 11345788888888888 555544 458888889877544433343345567
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
....|.|++.+++++......|-++|+.+.+
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred cccccCcccceeeecccccceeEEEeeccce
Confidence 7899999994445555566789999987654
No 272
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.58 E-value=1e-07 Score=58.64 Aligned_cols=38 Identities=26% Similarity=0.580 Sum_probs=35.3
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
+++.++.+|...|++|+|+|++. +|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 45678999999999999999987 999999999999997
No 273
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.1e-05 Score=76.16 Aligned_cols=162 Identities=18% Similarity=0.310 Sum_probs=108.1
Q ss_pred CCCceeEEEEcCC-CCcEEEE-----EeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 164 HQGCVNRIRAMTQ-NPHICAS-----WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 164 H~~~V~~i~~~p~-~~~~lat-----~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
|...|+.+.++|. .+..+|+ +|.-+.|+||.+..... ..++..-.-....=..+.|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~------------------~~~~a~ksFFkadkvqm~W 225 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ------------------HQPVANKSFFKADKVQMKW 225 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc------------------cchhhhccccccceeEEEe
Confidence 5788899999997 3556666 45557899999874110 1111111111222236889
Q ss_pred CCCCCCeEEEEeC--C---------CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEE--ECCCcEEEE
Q 018322 238 NPITTGRLVTGDC--N---------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC--SVDGHIAIW 304 (358)
Q Consensus 238 s~~~~~~l~sgs~--d---------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~--s~Dg~I~iw 304 (358)
++.+.++|+.++. | .++++.++.. ....+ .+ ...++|.++.|+|++. -|+.+ -.=..+.||
T Consensus 226 N~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~s~~V---~L-~k~GPVhdv~W~~s~~-EF~VvyGfMPAkvtif 299 (566)
T KOG2315|consen 226 NKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-ESVSV---PL-LKEGPVHDVTWSPSGR-EFAVVYGFMPAKVTIF 299 (566)
T ss_pred ccCCceEEEEEEEeecCCCccccccceEEEEEecC-ceEEE---ec-CCCCCceEEEECCCCC-EEEEEEecccceEEEE
Confidence 9998876655543 3 3677777752 22221 11 2468999999999997 55554 456789999
Q ss_pred ECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC---CCCEEEEeCCCCC
Q 018322 305 DTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD---DGTFSIHDLRLLK 354 (358)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~---Dg~i~iwDlr~~~ 354 (358)
|+|. .++..+ -.++-|++-|||.| ++|+.+|. -|.+-|||+.+.+
T Consensus 300 nlr~--~~v~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 300 NLRG--KPVFDF--PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred cCCC--CEeEeC--CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchh
Confidence 9986 455444 46677999999999 88877775 4799999998843
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.54 E-value=6.9e-06 Score=86.98 Aligned_cols=175 Identities=9% Similarity=0.036 Sum_probs=109.8
Q ss_pred eEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc-cccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEE
Q 018322 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNA-LAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (358)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 247 (358)
+.|+++|.+..++++.+.++.|++||....... +...+... ....... ....-...++|+++|++..++++
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~------~~~g~~~--~~~~~~~P~GIavspdG~~LYVA 757 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER------NLNGSSG--TSTSFAQPSGISLSPDLKELYIA 757 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc------cCCCCcc--ccccccCccEEEEeCCCCEEEEE
Confidence 468889855578888888899999998653211 00000000 0000000 00111245689999998634455
Q ss_pred EeCCCcEEEEecCCCCCcccC---------CCcccc--------CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 248 GDCNSCIYLWEPASDATWNVD---------PNPFIG--------HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 248 gs~dg~I~lwd~~~~~~~~~~---------~~~~~~--------h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
-..++.|++||+.+++..... ...+.. .-.....+++++++. ++++-+.++.|++||..++
T Consensus 758 Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg- 835 (1057)
T PLN02919 758 DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATK- 835 (1057)
T ss_pred ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCC-
Confidence 556789999998764321100 000100 112345789999998 9999999999999999863
Q ss_pred CeeEEEec--------------CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 311 SALTSFKA--------------HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 311 ~~~~~~~~--------------h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+..+.+ +-.....|+++++| .++++-+.++.|++||+++.+.
T Consensus 836 -~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 836 -RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -eEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence 2222221 12246789999999 8888888999999999988653
No 275
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.53 E-value=5.6e-07 Score=77.14 Aligned_cols=75 Identities=21% Similarity=0.400 Sum_probs=66.2
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
.|.+++-+|....++++|+.+|.+-|||.++...+ ...+..|+.++..|-|+|..+..|++|+.||.+-.||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccch---HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 49999999998878999999999999999985332 3567889999999999999988999999999999999874
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=8.9e-06 Score=76.68 Aligned_cols=110 Identities=15% Similarity=0.298 Sum_probs=83.0
Q ss_pred CCCeEEEEeCCCCCCeEEE--EeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC---CCcEEE
Q 018322 229 KDEGYAIDWNPITTGRLVT--GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV---DGHIAI 303 (358)
Q Consensus 229 ~~~v~~l~~s~~~~~~l~s--gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~---Dg~I~i 303 (358)
.++|+++.|+|.+. .|++ |-.=..+.|+|++- .. .+.--.++=+++-|+|.|+ +++.++. -|.|-|
T Consensus 270 ~GPVhdv~W~~s~~-EF~VvyGfMPAkvtifnlr~--~~-----v~df~egpRN~~~fnp~g~-ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGR-EFAVVYGFMPAKVTIFNLRG--KP-----VFDFPEGPRNTAFFNPHGN-IILLAGFGNLPGDMEV 340 (566)
T ss_pred CCCceEEEECCCCC-EEEEEEecccceEEEEcCCC--CE-----eEeCCCCCccceEECCCCC-EEEEeecCCCCCceEE
Confidence 57999999999997 5554 44567899999864 21 1222456778899999999 7776665 489999
Q ss_pred EECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC------CCCEEEEeCC
Q 018322 304 WDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD------DGTFSIHDLR 351 (358)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~------Dg~i~iwDlr 351 (358)
||+.+ .+++..+.+-.. +.+.|+|+| .+|+|+.. |+.++||+..
T Consensus 341 wDv~n-~K~i~~~~a~~t--t~~eW~PdG-e~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 341 WDVPN-RKLIAKFKAANT--TVFEWSPDG-EYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred Eeccc-hhhccccccCCc--eEEEEcCCC-cEEEEEeccccEEecCCeEEEEec
Confidence 99998 567777766554 557999999 67766653 7889999874
No 277
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.46 E-value=7.9e-06 Score=81.07 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=113.0
Q ss_pred eeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEE
Q 018322 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 247 (358)
|.-+|.+ .+++.+|...|+|.+-|.++ .+++.++..|++.+.+++. .|+ .|++
T Consensus 180 v~imR~N---nr~lf~G~t~G~V~LrD~~s---------------------~~~iht~~aHs~siSDfDv--~GN-lLit 232 (1118)
T KOG1275|consen 180 VTIMRYN---NRNLFCGDTRGTVFLRDPNS---------------------FETIHTFDAHSGSISDFDV--QGN-LLIT 232 (1118)
T ss_pred eEEEEec---CcEEEeecccceEEeecCCc---------------------Cceeeeeeccccceeeeec--cCC-eEEE
Confidence 5555543 37899999999999999987 6888999999998876655 555 8888
Q ss_pred EeC---------CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC---CCCeeEE
Q 018322 248 GDC---------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV---GKSALTS 315 (358)
Q Consensus 248 gs~---------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~---~~~~~~~ 315 (358)
|+. |..|+|||+|..... .++.-+.++ .=++|+|.-...++.++..|...+-|... +...+..
T Consensus 233 CG~S~R~~~l~~D~FvkVYDLRmmral----~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~ 307 (1118)
T KOG1275|consen 233 CGYSMRRYNLAMDPFVKVYDLRMMRAL----SPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM 307 (1118)
T ss_pred eecccccccccccchhhhhhhhhhhcc----CCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeE
Confidence 864 456789999885442 233333333 44689999888999999999999999443 2222333
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
+..-++.+..+.+++++ ..||.|..+|.|.+|-
T Consensus 308 v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 308 VNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA 340 (1118)
T ss_pred EccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence 44556669999999999 9999999999999997
No 278
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.45 E-value=1.1e-05 Score=75.70 Aligned_cols=147 Identities=12% Similarity=0.113 Sum_probs=99.5
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 018322 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (358)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~ 259 (358)
++++-..+|.|.+.|..+ .+.+..+......-..+.++|++. ++++++.||.|.++|+
T Consensus 8 ~~V~~~~~~~v~viD~~t---------------------~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~ 65 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGAT---------------------NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDL 65 (369)
T ss_dssp EEEEEGGGTEEEEEETTT----------------------SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEET
T ss_pred EEEEecCCCEEEEEECCC---------------------CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEEC
Confidence 445666789999999887 466677765444434578999998 8888899999999999
Q ss_pred CCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec-------CCCCeEEEEEeCCC
Q 018322 260 ASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA-------HNADVNVISWNRLA 332 (358)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~-------h~~~V~~i~~~p~~ 332 (358)
.+.. .. ..+.. .....+++++++++.+++++...+.+.++|.++. +++..+.. ..+.+..|..+|..
T Consensus 66 ~~~~-~v---~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 66 ATGK-VV---ATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp TSSS-EE---EEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred Cccc-EE---EEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecCCC
Confidence 8743 22 22322 3456789999999977777788999999999984 46665532 23467888888888
Q ss_pred CcEEEEEeCCCCEEEEeCCCCC
Q 018322 333 SCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 333 ~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..++++--+-+.|.+.|....+
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSS
T ss_pred CEEEEEEccCCeEEEEEecccc
Confidence 4466666566888888877664
No 279
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.44 E-value=5.9e-08 Score=92.40 Aligned_cols=170 Identities=20% Similarity=0.286 Sum_probs=115.7
Q ss_pred CCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 165 QGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 165 ~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
...+.|+.+.-.. ..++|.|..+|.|-+-.+..... .......+|...+++++|++...+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------------Ss~E~tp~~ar~Ct~lAwneLDtn 116 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------------SSAEVTPGYARPCTSLAWNELDTN 116 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------------ccceecccccccccccccccccHH
Confidence 3456666665444 26899999999999998876321 112334577889999999998776
Q ss_pred eEEEE----eCCCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 244 RLVTG----DCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 244 ~l~sg----s~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
.||+| ..|..+.|||+.+.-........|.+ ......+++|-.+.+ ++.+|...+.+.++|+|........+
T Consensus 117 ~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 117 HLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 88887 35678999999774221111112222 345566899998888 89999999999999999632222222
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe-CCCCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHD-LRLLKVRL 357 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD-lr~~~~~l 357 (358)
....+..+...|....++++-. ||.|.+|| .|+.+.|+
T Consensus 194 nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl 232 (783)
T KOG1008|consen 194 NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL 232 (783)
T ss_pred hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHH
Confidence 2223445666774436777765 89999999 78777664
No 280
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.43 E-value=1.4e-05 Score=76.17 Aligned_cols=116 Identities=19% Similarity=0.267 Sum_probs=80.0
Q ss_pred CeEEEEeCCCCCCeEEEE----eCCCc----EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEE
Q 018322 231 EGYAIDWNPITTGRLVTG----DCNSC----IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIA 302 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sg----s~dg~----I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (358)
...++.|+...+..+.|. +.+|. -++|++.......+ ...-....+.|.+++++|++. .|+.|+.||+|.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-svtsipL~s~v~~ca~sp~E~-kLvlGC~DgSii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-SVTSIPLPSQVICCARSPSED-KLVLGCEDGSII 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE-EEEEEecCCcceEEecCcccc-eEEEEecCCeEE
Confidence 345677776555455443 22332 24566643211111 112224678899999999998 999999999999
Q ss_pred EEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 303 IWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+||...+ +.......-..+.++|+|+| .++++|+..|.+.+||+.-
T Consensus 285 LyD~~~~---~t~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 285 LYDTTRG---VTLLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEcCCC---eeeeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeec
Confidence 9999863 22233344567899999999 8999999999999999863
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.41 E-value=5.4e-05 Score=66.17 Aligned_cols=170 Identities=14% Similarity=0.177 Sum_probs=103.6
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC-CCCCeEEEEeCCCC----
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNPIT---- 241 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~---- 241 (358)
.=.+++|+|++ .+||.+...|+|++||+....-.. ..|...+.+ -...|.+|.|.+..
T Consensus 45 QWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~----------------I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ 107 (282)
T PF15492_consen 45 QWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFV----------------IPPAMSFPGDLSDAIAGLIFLEYKKSAQ 107 (282)
T ss_pred hheEEEECCCC-cEEEEEcCCCeEEEEecccceeEE----------------cCcccccCCccccceeeeEeeccccccc
Confidence 34678999999 799999999999999997521111 011111111 12355556554432
Q ss_pred -CCeEEEEeCCCcEEEEecCCCC-CcccCCCc--ccc-CCCcEEEEEECCCCCCEEEEEEC-CC----------cEEEEE
Q 018322 242 -TGRLVTGDCNSCIYLWEPASDA-TWNVDPNP--FIG-HSASVEDLQWSPTEPDVFASCSV-DG----------HIAIWD 305 (358)
Q Consensus 242 -~~~l~sgs~dg~I~lwd~~~~~-~~~~~~~~--~~~-h~~~V~~v~~sp~~~~~las~s~-Dg----------~I~iwD 305 (358)
...|++-...|.++-|-+..+. +....... +.. +...|+++.++|.++ +|+.|+. .. -+.-|-
T Consensus 108 ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~~~~~s~a~~~GLtaWR 186 (282)
T PF15492_consen 108 WSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR-LLLVGGCEQNQDGMSKASSCGLTAWR 186 (282)
T ss_pred cceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC-EEEEeccCCCCCccccccccCceEEE
Confidence 1256666678877777653211 10100112 222 467899999999998 6665553 22 245564
Q ss_pred CCCCCC----------------------eeEEE------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 306 TRVGKS----------------------ALTSF------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 306 ~r~~~~----------------------~~~~~------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+-.+.. .+..+ ......|..++.+|+| .+||+...+|.|.+|++.+++.
T Consensus 187 iL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 187 ILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred EcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence 432110 00111 1234578999999999 9999999999999999988764
No 282
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.40 E-value=8e-05 Score=69.63 Aligned_cols=172 Identities=11% Similarity=0.108 Sum_probs=108.2
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEe---CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWA---DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s---~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..-......+.++|++..+.++.. ..|.|..|.+...... ...+............++.+
T Consensus 33 ~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~-----------------L~~~~~~~~~g~~p~~i~~~ 95 (345)
T PF10282_consen 33 VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT-----------------LTLLNSVPSGGSSPCHIAVD 95 (345)
T ss_dssp EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE-----------------EEEEEEEEESSSCEEEEEEC
T ss_pred ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce-----------------eEEeeeeccCCCCcEEEEEe
Confidence 344566677889998854444433 3678999998763111 12223333223355679999
Q ss_pred CCCCCeEEEEe-CCCcEEEEecCCCCCcccCCCcc----------ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 239 PITTGRLVTGD-CNSCIYLWEPASDATWNVDPNPF----------IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 239 ~~~~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~----------~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
|++. +|+++. .+|.|.++++...+........+ ........++.|+|+++.++++.-....|++|++.
T Consensus 96 ~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 96 PDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID 174 (345)
T ss_dssp TTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred cCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 9998 777765 58999999998754422111111 11234578999999999566655556689999997
Q ss_pred CCCCee---EEE-ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 308 VGKSAL---TSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 308 ~~~~~~---~~~-~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.....+ ..+ ......-+.+.|+|++..++++.-.+++|.++++.
T Consensus 175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 743212 222 23455688999999995566666778899999887
No 283
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=1.1e-06 Score=78.30 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=101.5
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.+.|.++.|...+ .++..|...|.|...|++..... +..+...+ .|...|++|..-.....+
T Consensus 252 ksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----------------~~~~a~rl-yh~Ssvtslq~Lq~s~q~ 313 (425)
T KOG2695|consen 252 KSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----------------NGWCAQRL-YHDSSVTSLQILQFSQQK 313 (425)
T ss_pred chhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----------------CCcceEEE-EcCcchhhhhhhccccce
Confidence 4678888888767 68999999999999999873211 23444444 578889999887733348
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEE--EECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe----c
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDL--QWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK----A 318 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v--~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~----~ 318 (358)
|++.+.+|+|.|||++. .+..+....+.||...-.-+ -..+.+. ++++++.|-..|||.++.+ ..+.++. +
T Consensus 314 LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~g-hLl~tipf~~s~ 390 (425)
T KOG2695|consen 314 LMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSG-HLLCTIPFPYSA 390 (425)
T ss_pred EeeccCcCceeEeeehh-hhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccC-ceeeccCCCCcc
Confidence 99999999999999987 33322346778885433322 3455566 8888999999999999985 4555542 2
Q ss_pred CCCCeEEEEEe
Q 018322 319 HNADVNVISWN 329 (358)
Q Consensus 319 h~~~V~~i~~~ 329 (358)
....+.+++|.
T Consensus 391 ~e~d~~sv~~~ 401 (425)
T KOG2695|consen 391 SEVDIPSVAFD 401 (425)
T ss_pred ccccccceehh
Confidence 33356666664
No 284
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.34 E-value=4.6e-05 Score=71.21 Aligned_cols=169 Identities=11% Similarity=0.162 Sum_probs=105.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeEEEEeCCCCCCe
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~ 244 (358)
....++.++|++..++++--....|++|++......+ .+...+. ........+.|+|++.-.
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l-----------------~~~~~~~~~~G~GPRh~~f~pdg~~~ 206 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKL-----------------TPVDSIKVPPGSGPRHLAFSPDGKYA 206 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TE-----------------EEEEEEECSTTSSEEEEEE-TTSSEE
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceE-----------------EEeeccccccCCCCcEEEEcCCcCEE
Confidence 4567899999996666666666789999997732111 1112222 233467789999999834
Q ss_pred EEEEeCCCcEEEEecCC-CCCcccC--CCccc-c--CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC---eeEE
Q 018322 245 LVTGDCNSCIYLWEPAS-DATWNVD--PNPFI-G--HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS---ALTS 315 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~-~~~~~~~--~~~~~-~--h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~---~~~~ 315 (358)
.++.-.++.|.++++.. .+.+... ...+. + .......|+++|+++.++++.....+|.+|++..... .+..
T Consensus 207 Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 207 YVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred EEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 45566688999999973 2221100 01110 1 1236888999999997777777889999999943211 2333
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+.......+.++++|++..++++...++.|.+|++.
T Consensus 287 ~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 287 VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 344455689999999994444444567799999763
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=0.00016 Score=69.31 Aligned_cols=157 Identities=11% Similarity=0.082 Sum_probs=88.2
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
..+.+...+|+|++..++.+.+.+| .|.++++.. .. ...+..+........|+|+|
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~---------------------g~-~~~LT~~~~~d~~p~~SPDG 288 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT---------------------KT-LTQITNYPGIDVNGNFVEDD 288 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC---------------------Cc-EEEcccCCCccCccEECCCC
Confidence 4566667889999976776666554 466667654 11 22233333223355799999
Q ss_pred CCeEEEEeCCC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC--------CcEEEEECCCCCC
Q 018322 242 TGRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD--------GHIAIWDTRVGKS 311 (358)
Q Consensus 242 ~~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D--------g~I~iwD~r~~~~ 311 (358)
..++++.+..+ .|++.++..+.... ..+.+. . ...|+|++..++++.... ..|.+.|+..+.
T Consensus 289 ~~I~F~Sdr~g~~~Iy~~dl~~g~~~r---lt~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~- 360 (419)
T PRK04043 289 KRIVFVSDRLGYPNIFMKKLNSGSVEQ---VVFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY- 360 (419)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEe---CccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-
Confidence 84444444444 56677775532211 112221 1 248999999444444332 367888887643
Q ss_pred eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCC--CEEEEeCCC
Q 018322 312 ALTSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRL 352 (358)
Q Consensus 312 ~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg--~i~iwDlr~ 352 (358)
...+.... ......|+|+|..++++....+ .|.+.++..
T Consensus 361 -~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 361 -IRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred -eEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 33443332 2335899999944444443333 366666654
No 286
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.30 E-value=4.8e-05 Score=72.66 Aligned_cols=97 Identities=14% Similarity=0.252 Sum_probs=73.1
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
.....+.+.+++|+.. .|+.|+.||.|.+||.+.+. ..+....-..+.++|||+|. +|+.|+..|.+.+||+
T Consensus 257 pL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~------t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 257 PLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGV------TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDM 328 (545)
T ss_pred ecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCe------eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEe
Confidence 4667899999999998 99999999999999986632 22333445678899999999 9999999999999998
Q ss_pred CCCC------------CeeEEE---ecCCCCeEEEEEeCC
Q 018322 307 RVGK------------SALTSF---KAHNADVNVISWNRL 331 (358)
Q Consensus 307 r~~~------------~~~~~~---~~h~~~V~~i~~~p~ 331 (358)
.-.. .....+ -.+...+-.+.|++.
T Consensus 329 ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~ 368 (545)
T PF11768_consen 329 ALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPA 368 (545)
T ss_pred ecCccceeeccccCCCccEEeeehhccCcchhheeEeccC
Confidence 6421 111222 234556777888843
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=0.0004 Score=66.51 Aligned_cols=158 Identities=10% Similarity=0.016 Sum_probs=91.6
Q ss_pred CceeEEEEcCCCCcEEEEEeC---CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 166 GCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
+.+..-+|+|++..+++..+. ...|+++|+.. .... .+....+...+.+|+|++.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t---------------------g~~~-~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT---------------------GKKE-KIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC---------------------CcEE-EEecCCCcEEeeEECCCCC
Confidence 467789999999544554333 34688888865 2222 2223344556788999998
Q ss_pred CeEEEEeCC--CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC--cEEEEECCCCCCeeEEEec
Q 018322 243 GRLVTGDCN--SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--HIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 243 ~~l~sgs~d--g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--~I~iwD~r~~~~~~~~~~~ 318 (358)
.++++.+.+ ..|.++++..+ .. ..+..+........|+|++..++++....+ .|.+.|+..+. ...+..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g-~~----~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~--~~rlt~ 318 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTK-TL----TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS--VEQVVF 318 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCC-cE----EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC--eEeCcc
Confidence 444455444 46777787553 22 223333333344589999984555544444 56667776643 222322
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCC--------CCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDD--------GTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~D--------g~i~iwDlr~~~ 354 (358)
.... ...|+|+|..++++.... ..|.+.|+....
T Consensus 319 ~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 319 HGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred CCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 2211 248999994444444332 267778876654
No 288
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=1.1e-06 Score=86.75 Aligned_cols=155 Identities=18% Similarity=0.247 Sum_probs=101.6
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCC-cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.-.|..+|+-|.-+.+|..+|.+.+... -..+|++.. ...+..+|.+ -.++.|+.
T Consensus 1139 ~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s--------------------~~~~~Hsf~e----d~~vkFsn 1194 (1516)
T KOG1832|consen 1139 VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS--------------------TGGPRHSFDE----DKAVKFSN 1194 (1516)
T ss_pred ccccccccccccccCCcceeeeeccccCchHHHhcccc--------------------ccCccccccc----cceeehhh
Confidence 3469999999998888865555544433 567999887 3566666654 44888988
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
... .-+.|.+.....|||+.+............+....-+...|+|... +++ .|| .+||+|.+ ..++.+...
T Consensus 1195 ~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl---ndG--vLWDvR~~-~aIh~FD~f 1266 (1516)
T KOG1832|consen 1195 SLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL---NDG--VLWDVRIP-EAIHRFDQF 1266 (1516)
T ss_pred hHH-HHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe---eCc--eeeeeccH-HHHhhhhhh
Confidence 755 5566666678899999885543221222222233347788999987 554 344 37999985 566666443
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+. --.-.|+|+| .-++.-+ -|||+|+++
T Consensus 1267 t~-~~~G~FHP~g-~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1267 TD-YGGGGFHPSG-NEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred ee-cccccccCCC-ceEEeec-----hhhhhHHHH
Confidence 31 1223699999 5555544 389999875
No 289
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=4.9e-06 Score=75.49 Aligned_cols=92 Identities=14% Similarity=0.222 Sum_probs=76.3
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (358)
++...+.+|...|..|+|+|...|++..++.+..|.|.|+.+... ...+..+ ..+++++|..++.+++..|-..|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~----vssy~a~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV----VSSYIAY-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee----eeheecc-CCceeeeeccCCcceeEEeccCc
Confidence 334456778889999999999999999999999999999987332 2455556 78999999999999999999999
Q ss_pred cEEEEECCCCCCeeEEE
Q 018322 300 HIAIWDTRVGKSALTSF 316 (358)
Q Consensus 300 ~I~iwD~r~~~~~~~~~ 316 (358)
.|.|||+|.+..++..+
T Consensus 259 ~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 259 MVLVYDMRQPEGPLMEL 275 (463)
T ss_pred eEEEEEccCCCchHhhh
Confidence 99999999876555444
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=2e-06 Score=80.79 Aligned_cols=130 Identities=19% Similarity=0.295 Sum_probs=89.3
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcc---cCCCccccCCCcEEEEEECCCCCCEEEEEE
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN---VDPNPFIGHSASVEDLQWSPTEPDVFASCS 296 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~las~s 296 (358)
..+..+.||+..|.+++--.+.+ -+++++.|++|++|.++..+.-. ....+++.|+.+|+++-|-.+.+ .++ +
T Consensus 726 irL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~--S 801 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIA--S 801 (1034)
T ss_pred eeeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eee--e
Confidence 34567889999888877655554 89999999999999998754322 12456888999999999987776 555 4
Q ss_pred CCCcEEEEECCCCCCeeEEE--ecCCCCeEEEEEeCC-CCcEEEE-EeCCCCEEEEeCCCCC
Q 018322 297 VDGHIAIWDTRVGKSALTSF--KAHNADVNVISWNRL-ASCLLAS-GSDDGTFSIHDLRLLK 354 (358)
Q Consensus 297 ~Dg~I~iwD~r~~~~~~~~~--~~h~~~V~~i~~~p~-~~~~las-gs~Dg~i~iwDlr~~~ 354 (358)
.||.|.+||.--+. ++..+ ....+.+..|..-++ ...++.. ++...+|+++|.|...
T Consensus 802 cD~giHlWDPFigr-~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred ccCcceeecccccc-hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc
Confidence 57999999987643 33222 112223444444443 2244444 4678899999999764
No 291
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.15 E-value=0.00019 Score=66.83 Aligned_cols=145 Identities=14% Similarity=0.155 Sum_probs=106.0
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCC-cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.++|.+.|.-.++..++ .-++.|..|| .+-|||... ..+..+...-+.|.++..++
T Consensus 355 qv~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~----------------------~e~kr~e~~lg~I~av~vs~ 411 (668)
T COG4946 355 QVGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDG----------------------GEVKRIEKDLGNIEAVKVSP 411 (668)
T ss_pred EcCCCCceEEEEEccCC-cceEEeccCCceEEEEecCC----------------------ceEEEeeCCccceEEEEEcC
Confidence 45688888888887776 4788889999 899999887 33455666677999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC----cEEEEECCCCCCeeEE
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG----HIAIWDTRVGKSALTS 315 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg----~I~iwD~r~~~~~~~~ 315 (358)
+|. +++.+.....|.+.|+.++.... .-...-+-|+++.|||+++ +||-+--+| .|+++|+..++ +..
T Consensus 412 dGK-~~vvaNdr~el~vididngnv~~----idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~K--iy~ 483 (668)
T COG4946 412 DGK-KVVVANDRFELWVIDIDNGNVRL----IDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGK--IYD 483 (668)
T ss_pred CCc-EEEEEcCceEEEEEEecCCCeeE----ecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCe--EEE
Confidence 998 89999888899999998854322 1223457899999999999 888766554 79999998743 333
Q ss_pred EecCCCCeEEEEEeCCCCcEEE
Q 018322 316 FKAHNADVNVISWNRLASCLLA 337 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~la 337 (358)
+....+-=.+-+|.|++ ++|.
T Consensus 484 vTT~ta~DfsPaFD~d~-ryLY 504 (668)
T COG4946 484 VTTPTAYDFSPAFDPDG-RYLY 504 (668)
T ss_pred ecCCcccccCcccCCCC-cEEE
Confidence 33222223445788888 5443
No 292
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.12 E-value=0.00046 Score=72.19 Aligned_cols=172 Identities=17% Similarity=0.260 Sum_probs=107.7
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeC---CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc--CCCC
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKD 230 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~ 230 (358)
.+.....+-.|--.+++|.|+| ++||+.-. ...|.+|.-+.. ..-.+.+. ....
T Consensus 247 ~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGL--------------------rhgeF~l~~~~~~~ 305 (928)
T PF04762_consen 247 ELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGL--------------------RHGEFTLRFDPEEE 305 (928)
T ss_pred eEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCc--------------------EeeeEecCCCCCCc
Confidence 3444444445556678999999 67877554 234666665541 11112222 3455
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC--
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV-- 308 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~-- 308 (358)
.|..|.|++++. .||..-.+ .|.+|-..+ -.|.............+..+.|+|..+..|...+.+|.+..++...
T Consensus 306 ~v~~l~Wn~ds~-iLAv~~~~-~vqLWt~~N-YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 306 KVIELAWNSDSE-ILAVWLED-RVQLWTRSN-YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV 382 (928)
T ss_pred eeeEEEECCCCC-EEEEEecC-CceEEEeeC-CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence 789999999998 88887755 499999866 3443211111122334555999998887787777767776654421
Q ss_pred --CC-----------------------------CeeEEE-ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 309 --GK-----------------------------SALTSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 309 --~~-----------------------------~~~~~~-~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+. .|+..+ -.-.+.|+.++|++.+ ..+|+-..||.|.+|....
T Consensus 383 ~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~-~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 383 SRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN-SRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC-CeEEEEECCCCEEEEEecC
Confidence 10 011111 1235679999999998 5688888999999988543
No 293
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.11 E-value=0.00028 Score=66.16 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=100.6
Q ss_pred CCceeEEEEcCCC-CcEEEEE-----eCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 165 QGCVNRIRAMTQN-PHICASW-----ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 165 ~~~V~~i~~~p~~-~~~lat~-----s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
...|....++|.+ ...||.+ +..++++||.+.. ..++.+..-.+.....|.|+
T Consensus 173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~---------------------~s~l~tk~lfk~~~~qLkW~ 231 (561)
T COG5354 173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK---------------------NSVLVTKNLFKVSGVQLKWQ 231 (561)
T ss_pred ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC---------------------CCeeeeeeeEeecccEEEEe
Confidence 3566777788863 2335554 4567899999985 23332222223345579999
Q ss_pred CCCCCeEEE-Ee----------CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE--CCCcEEEEE
Q 018322 239 PITTGRLVT-GD----------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWD 305 (358)
Q Consensus 239 ~~~~~~l~s-gs----------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD 305 (358)
+.|. +|+. .- ...+++|++++.... .....-.++|.+++|.|.+. -|++++ ....+.++|
T Consensus 232 ~~g~-~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-----~V~~~~~~pVhdf~W~p~S~-~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 232 VLGK-YLLVLVMTHTKSNKSYFGESNLYLLRITERSI-----PVEKDLKDPVHDFTWEPLSS-RFAVISGYMPASVSVFD 304 (561)
T ss_pred cCCc-eEEEEEEEeeecccceeccceEEEEeeccccc-----ceeccccccceeeeecccCC-ceeEEecccccceeecc
Confidence 9987 4332 21 124677888864222 11124578999999999987 666655 688999999
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCC---CCEEEEeCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRL 352 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~D---g~i~iwDlr~ 352 (358)
+|.. ..+..-...=|.+.|+|.+ ++++.++.| |.+-|||...
T Consensus 305 lr~N----l~~~~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 305 LRGN----LRFYFPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred cccc----eEEecCCcccccccccCcc-cEEEEecCCccccceEEeccCC
Confidence 9972 3344455566888899988 777776654 6788888643
No 294
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.10 E-value=0.00018 Score=76.42 Aligned_cols=121 Identities=13% Similarity=0.131 Sum_probs=79.6
Q ss_pred eEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccC----CCcccc------CCCcEEEEEECCCCCCEEEEEECCCcE
Q 018322 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD----PNPFIG------HSASVEDLQWSPTEPDVFASCSVDGHI 301 (358)
Q Consensus 232 v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~----~~~~~~------h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (358)
.++|+++|.+..++++...++.|++||..++...... .....+ .-.....|+|+|++..++++-+.++.|
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 4589999954436677777899999998653211000 000111 113456799999988677888888999
Q ss_pred EEEECCCCCCeeEE------------Eec--------CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 302 AIWDTRVGKSALTS------------FKA--------HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 302 ~iwD~r~~~~~~~~------------~~~--------h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
++||+.++...+.. +.. .-.....++|+++| .++++-+.++.|++||..+.
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCC
Confidence 99999864321110 000 01124578999999 78888889999999998754
No 295
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=7.9e-06 Score=74.20 Aligned_cols=85 Identities=20% Similarity=0.338 Sum_probs=74.8
Q ss_pred ccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 271 PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 271 ~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.+.+|...|.+++|+|....++..++.+..|+|.|+++. ..+..+.+| ..+++++|..+..++|..|-.+|.|.|||+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~-~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS-CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccc-eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 456688899999999988878999999999999999983 567777877 679999999999899999999999999999
Q ss_pred CCCCCCC
Q 018322 351 RLLKVRL 357 (358)
Q Consensus 351 r~~~~~l 357 (358)
|+...++
T Consensus 266 R~~~~~~ 272 (463)
T KOG1645|consen 266 RQPEGPL 272 (463)
T ss_pred cCCCchH
Confidence 9987654
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00018 Score=70.91 Aligned_cols=159 Identities=18% Similarity=0.270 Sum_probs=104.3
Q ss_pred EEEecCCCceeEEEEcCC-------------CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQ-------------NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~-------------~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
+.+-.|.|.|.-..+.-. | .++||||.||+|.|..+-+ .+...++
T Consensus 52 ~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~G-ey~asCS~DGkv~I~sl~~---------------------~~~~~~~ 109 (846)
T KOG2066|consen 52 FALGTHRGAVYLTTCQGNPKTNFDHSSSILEG-EYVASCSDDGKVVIGSLFT---------------------DDEITQY 109 (846)
T ss_pred eeeccccceEEEEecCCcccccccccccccCC-ceEEEecCCCcEEEeeccC---------------------CccceeE
Confidence 455568888877766544 4 7999999999999988876 2222223
Q ss_pred cCCCCCeEEEEeCCC----CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcE
Q 018322 226 GGHKDEGYAIDWNPI----TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~----~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (358)
. ...++.+++++|+ ..+++++|+..| +.++.-+-.+.+. ......-.++|.+++|. |. ++|-++.+| |
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~--~v~l~~~eG~I~~i~W~--g~-lIAWand~G-v 181 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD--SVVLSEGEGPIHSIKWR--GN-LIAWANDDG-V 181 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc--ceeeecCccceEEEEec--Cc-EEEEecCCC-c
Confidence 2 2358889999998 233899999888 7777644333322 11234456899999997 44 777777655 8
Q ss_pred EEEECCCCCCeeEEEe-cCCC-----CeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 302 AIWDTRVGKSALTSFK-AHNA-----DVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 302 ~iwD~r~~~~~~~~~~-~h~~-----~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
++||+.+. +.+..+. .+.. --..+.|.+.. .|+.|=. .+|+|..++
T Consensus 182 ~vyd~~~~-~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTR-QRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIGWG-DSVKICSIK 233 (846)
T ss_pred EEEecccc-ceeeccCCCCCCCCcccCCCceEecCCC--eEEEecC-CeEEEEEEe
Confidence 99999874 3333332 2211 12456787766 4445433 368888877
No 297
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.07 E-value=1.1e-06 Score=84.09 Aligned_cols=169 Identities=21% Similarity=0.284 Sum_probs=114.1
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeC----CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWAD----TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
-+|...+++++|++-....||.|-+ |..+.|||+....... ...+.+.- +-.....+++|
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP---------------ke~~~fs~-~~l~gqns~cw 162 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP---------------KESPLFSS-STLDGQNSVCW 162 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC---------------cccccccc-ccccCcccccc
Confidence 3578899999999986667777643 5679999998843211 01121111 12234458999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE-CCCCCCeeEEE
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD-TRVGKSALTSF 316 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD-~r~~~~~~~~~ 316 (358)
-.+.+ ++++|.....++++|++.... ....-.+..|..+...|-..++|++-. ||.|.+|| .|.-..++..+
T Consensus 163 lrd~k-lvlaGm~sr~~~ifdlRqs~~-----~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i 235 (783)
T KOG1008|consen 163 LRDTK-LVLAGMTSRSVHIFDLRQSLD-----SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQII 235 (783)
T ss_pred ccCcc-hhhcccccchhhhhhhhhhhh-----hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHH
Confidence 97776 889999889999999985322 111223456677788886555787766 99999999 55544444443
Q ss_pred ecCC----CCeEEEEEeCCCCcEEEEEeCC-CCEEEEeCCCC
Q 018322 317 KAHN----ADVNVISWNRLASCLLASGSDD-GTFSIHDLRLL 353 (358)
Q Consensus 317 ~~h~----~~V~~i~~~p~~~~~lasgs~D-g~i~iwDlr~~ 353 (358)
.... ..+..++|+|....++++...| ++|+++|++.-
T Consensus 236 ~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 236 LRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred hhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 2222 2489999999876788887765 68999998754
No 298
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=0.002 Score=58.20 Aligned_cols=175 Identities=12% Similarity=0.110 Sum_probs=109.9
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeC--CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWAD--TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
..+..+.+..+-+.|+|++..+.+.... .|.|-.|.+......+ ..+........+-..++
T Consensus 33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-----------------t~ln~~~~~g~~p~yvs 95 (346)
T COG2706 33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-----------------TFLNRQTLPGSPPCYVS 95 (346)
T ss_pred hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-----------------EEeeccccCCCCCeEEE
Confidence 4455677888889999988444444333 5778888877521111 11111111122336799
Q ss_pred eCCCCCCeEEEEeC-CCcEEEEecCCCCCcccCCCccccCCCc----------EEEEEECCCCCCEEEEEE-CCCcEEEE
Q 018322 237 WNPITTGRLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSAS----------VEDLQWSPTEPDVFASCS-VDGHIAIW 304 (358)
Q Consensus 237 ~s~~~~~~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~----------V~~v~~sp~~~~~las~s-~Dg~I~iw 304 (358)
.++++. +++++.. .|.|.++-++..+.... ......|.+. +....+.|+++ +++++. .--.|.+|
T Consensus 96 vd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~-~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y 172 (346)
T COG2706 96 VDEDGR-FVFVANYHSGSVSVYPLQADGSLQP-VVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLY 172 (346)
T ss_pred ECCCCC-EEEEEEccCceEEEEEcccCCcccc-ceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEE
Confidence 999998 7777754 68999999977544221 1122334444 88899999999 555554 34479999
Q ss_pred ECCCCCCeeE--EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 305 DTRVGKSALT--SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 305 D~r~~~~~~~--~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
++..+.-... ..-.-+..-..|.|+|++....+.+--+++|.+|.....
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 9986432111 111345567889999999444445556899999998764
No 299
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.00 E-value=0.0018 Score=60.97 Aligned_cols=114 Identities=16% Similarity=0.274 Sum_probs=78.4
Q ss_pred CCCCCeEEEEeCCCCCCeEEEE--eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC---CCcE
Q 018322 227 GHKDEGYAIDWNPITTGRLVTG--DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV---DGHI 301 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sg--s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~---Dg~I 301 (358)
.-.++|+.++|+|.+. .+++. -....+.++|++.. . .+..-...=+.+.|+|.++ +++.++. .|.|
T Consensus 272 ~~~~pVhdf~W~p~S~-~F~vi~g~~pa~~s~~~lr~N--l-----~~~~Pe~~rNT~~fsp~~r-~il~agF~nl~gni 342 (561)
T COG5354 272 DLKDPVHDFTWEPLSS-RFAVISGYMPASVSVFDLRGN--L-----RFYFPEQKRNTIFFSPHER-YILFAGFDNLQGNI 342 (561)
T ss_pred cccccceeeeecccCC-ceeEEecccccceeecccccc--e-----EEecCCcccccccccCccc-EEEEecCCccccce
Confidence 5578999999999998 55444 57889999999763 1 1222334445678999999 5555544 4789
Q ss_pred EEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEe------CCCCEEEEeCCC
Q 018322 302 AIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGS------DDGTFSIHDLRL 352 (358)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs------~Dg~i~iwDlr~ 352 (358)
-+||......++..+.+-+ ...+.|+|++ .++.+.- .|..|+|||+..
T Consensus 343 ~i~~~~~rf~~~~~~~~~n--~s~~~wspd~-qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 343 EIFDPAGRFKVAGAFNGLN--TSYCDWSPDG-QFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEeccCCceEEEEEeecCC--ceEeeccCCc-eEEEecCCCcccccCcceEEEEecC
Confidence 9999876433333454433 3557899999 5555442 378999999864
No 300
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.93 E-value=0.0013 Score=61.39 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=107.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCC-cEEE
Q 018322 178 PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNS-CIYL 256 (358)
Q Consensus 178 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg-~I~l 256 (358)
..++|..|. |++.|.+... .+. .-.+|...|.-..+..+.. -++.|..|| .+-+
T Consensus 332 Gd~ia~VSR-GkaFi~~~~~----------------------~~~-iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~i 386 (668)
T COG4946 332 GDYIALVSR-GKAFIMRPWD----------------------GYS-IQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGI 386 (668)
T ss_pred CcEEEEEec-CcEEEECCCC----------------------Cee-EEcCCCCceEEEEEccCCc-ceEEeccCCceEEE
Confidence 357777665 6777766543 222 2236677788888888887 889999999 9999
Q ss_pred EecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEE
Q 018322 257 WEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLL 336 (358)
Q Consensus 257 wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~l 336 (358)
+|...+.. ..+...-+.|.++..+|+|. .++.+.....|.+.|+.++...+ .-+...+-|+.+.|+|++ ++|
T Consensus 387 yd~~~~e~-----kr~e~~lg~I~av~vs~dGK-~~vvaNdr~el~vididngnv~~-idkS~~~lItdf~~~~ns-r~i 458 (668)
T COG4946 387 YDKDGGEV-----KRIEKDLGNIEAVKVSPDGK-KVVVANDRFELWVIDIDNGNVRL-IDKSEYGLITDFDWHPNS-RWI 458 (668)
T ss_pred EecCCceE-----EEeeCCccceEEEEEcCCCc-EEEEEcCceEEEEEEecCCCeeE-ecccccceeEEEEEcCCc-eeE
Confidence 99976432 34555668899999999998 78888888899999999864222 224456679999999999 899
Q ss_pred EEEeCCC----CEEEEeCCCCC
Q 018322 337 ASGSDDG----TFSIHDLRLLK 354 (358)
Q Consensus 337 asgs~Dg----~i~iwDlr~~~ 354 (358)
|-+--+| .|+++|+...+
T Consensus 459 AYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 459 AYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEecCcceeeeeEEEEecCCCe
Confidence 8876554 68999987754
No 301
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.011 Score=53.49 Aligned_cols=163 Identities=12% Similarity=0.100 Sum_probs=100.0
Q ss_pred eeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE-
Q 018322 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV- 246 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~- 246 (358)
+....+.|++..++++--..-+|.+|++....... ..+.. + .-...-..|.|+|+++ +..
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~----------------~~~~~-v-~~G~GPRHi~FHpn~k-~aY~ 207 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP----------------ADPAE-V-KPGAGPRHIVFHPNGK-YAYL 207 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCcccc----------------ccccc-c-CCCCCcceEEEcCCCc-EEEE
Confidence 88889999995444444444579999998421100 11111 1 2233556899999998 544
Q ss_pred EEeCCCcEEEEecCCCCCccc-------CCCccccCCCcEEEEEECCCCCCEEEEEE-CCCcEEEEECCCCCCeeEEE--
Q 018322 247 TGDCNSCIYLWEPASDATWNV-------DPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRVGKSALTSF-- 316 (358)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~-------~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~~~~~~~~~-- 316 (358)
++--+++|-+|.......... ....|.+ .....+|..+|+|+ +|.++. ....|.+|-+......+..+
T Consensus 208 v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g-~~~~aaIhis~dGr-FLYasNRg~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 208 VNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG-TNWAAAIHISPDGR-FLYASNRGHDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred EeccCCEEEEEEEcCCCceEEEeeeeccCccccCC-CCceeEEEECCCCC-EEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence 455689999999976422111 1122332 34677899999999 444433 34588888776543332222
Q ss_pred -ecCCCCeEEEEEeCCCCcEEEEEe-CCCCEEEEeCCC
Q 018322 317 -KAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRL 352 (358)
Q Consensus 317 -~~h~~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDlr~ 352 (358)
..+...-....|++.+ .+|+.++ ....|.+|-...
T Consensus 286 ~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 286 TPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDK 322 (346)
T ss_pred eccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcC
Confidence 3344556888999999 5555555 445788887653
No 302
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.79 E-value=0.00071 Score=70.83 Aligned_cols=160 Identities=16% Similarity=0.254 Sum_probs=101.1
Q ss_pred CCCceeEEEEcCCCCcEEEEEeC---C---CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 164 HQGCVNRIRAMTQNPHICASWAD---T---GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~---d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
+...-.+|+|-.+| .+||+.+- . ..++||+-...+.+. ..++. +--.+|+|
T Consensus 208 ~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~ReG~L~st----------------SE~v~------gLe~~l~W 264 (928)
T PF04762_consen 208 WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSREGELQST----------------SEPVD------GLEGALSW 264 (928)
T ss_pred cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCCceEEec----------------cccCC------CccCCccC
Confidence 45566789999999 67777664 3 468999987532211 11211 12337999
Q ss_pred CCCCCCeEEEEeC---CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee-
Q 018322 238 NPITTGRLVTGDC---NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL- 313 (358)
Q Consensus 238 s~~~~~~l~sgs~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~- 313 (358)
.|.|. ++|+... ...|.+|.- ++-+...-..++......|..++|++++. +||..-.|. |.+|-+.....-+
T Consensus 265 rPsG~-lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 265 RPSGN-LIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHWYLK 340 (928)
T ss_pred CCCCC-EEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEEEEE
Confidence 99998 8888764 346666663 32221100112234556899999999998 888877555 9999877643211
Q ss_pred EEEe-cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 314 TSFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 314 ~~~~-~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+.+. .....+..+.|+|..+..|.....+|.+.+++.
T Consensus 341 qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 341 QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 2222 223345569999988777777777677765543
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=3.7e-05 Score=76.27 Aligned_cols=156 Identities=14% Similarity=0.179 Sum_probs=109.3
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
+..|....+|++|+-.. +.|+.|+..|.|++|++.. +.......+|...++-+.-+.+
T Consensus 1097 frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~s---------------------G~~e~s~ncH~SavT~vePs~d 1154 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSS---------------------GSMEESVNCHQSAVTLVEPSVD 1154 (1516)
T ss_pred hhccccceeeEEeecCC-ceEEeeeccceEEEEEccC---------------------ccccccccccccccccccccCC
Confidence 34578899999999877 7999999999999999987 5556678899999999999999
Q ss_pred CCCeEEEEeCCC-cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE-Ee-
Q 018322 241 TTGRLVTGDCNS-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS-FK- 317 (358)
Q Consensus 241 ~~~~l~sgs~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~-~~- 317 (358)
|.-+|.+++... -..+|++.+.+... ..|. .-.++.|+.... .-+.|..-....|||+.+.. ++.+ +.
T Consensus 1155 gs~~Ltsss~S~PlsaLW~~~s~~~~~---Hsf~----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~-~l~tylt~ 1225 (1516)
T KOG1832|consen 1155 GSTQLTSSSSSSPLSALWDASSTGGPR---HSFD----EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCS-PLQTYLTD 1225 (1516)
T ss_pred cceeeeeccccCchHHHhccccccCcc---cccc----ccceeehhhhHH-HHHhcccccceEEEecccCc-HHHHhcCc
Confidence 883444444444 57899986633322 3333 345678887654 33334444678899999854 4443 21
Q ss_pred --cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 318 --AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 318 --~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+.+..-|+..|+|.. .+|+ .|| .+||.|..
T Consensus 1226 ~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred chhhhhhccccccCCCc-ceEe---eCc--eeeeeccH
Confidence 122233888999999 7776 455 46999975
No 304
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.70 E-value=0.00023 Score=69.38 Aligned_cols=115 Identities=18% Similarity=0.292 Sum_probs=86.8
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCC-----------cccCCCccccCCCcEEEEEECCCCCCEEEEEECC
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT-----------WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (358)
....|+.|+.... ++|.|+.||.+++..+.+... .....+++.||+.+|.-+.|+.+.+ .+-|...+
T Consensus 15 vkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccCCC
Confidence 3678999998775 999999999999987754211 1112356789999999999999888 89999999
Q ss_pred CcEEEEECCCCCCeeEEE-ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEE
Q 018322 299 GHIAIWDTRVGKSALTSF-KAHNADVNVISWNRLASCLLASGSDDGTFSI 347 (358)
Q Consensus 299 g~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~i 347 (358)
|.|.+|-+-.+..+-..+ ....+.|.+++|+-+| ..|+..-.||.|.+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIV 141 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEE
Confidence 999999987754332222 3456678999999999 66666666666544
No 305
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00025 Score=68.19 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=74.2
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE-EEEeCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY-AIDWNPITT 242 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~ 242 (358)
-.-.|.++.|+|.- .++|++..+|.|.++.++- +.+.++.-|..+++ +++|.|+|.
T Consensus 19 l~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n~----------------------qRlwtip~p~~~v~~sL~W~~DGk 75 (665)
T KOG4640|consen 19 LPINIKRIEWNPKM-DLIATRTEKGELLIHRLNW----------------------QRLWTIPIPGENVTASLCWRPDGK 75 (665)
T ss_pred cccceEEEEEcCcc-chhheeccCCcEEEEEecc----------------------ceeEeccCCCCccceeeeecCCCC
Confidence 35678889999998 6999999999999998874 55666766666666 999999998
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP 286 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 286 (358)
.||.|-.||+|++.|+.+++... .....-...|.++-|++
T Consensus 76 -llaVg~kdG~I~L~Dve~~~~l~---~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 76 -LLAVGFKDGTIRLHDVEKGGRLV---SFLFSVETDISKGIWDR 115 (665)
T ss_pred -EEEEEecCCeEEEEEccCCCcee---ccccccccchheeeccc
Confidence 99999999999999998865432 11122345667777764
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.65 E-value=0.00038 Score=69.55 Aligned_cols=146 Identities=19% Similarity=0.267 Sum_probs=99.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEE
Q 018322 178 PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLW 257 (358)
Q Consensus 178 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lw 257 (358)
+..++-|+-...+..+|++. .+......-....++-+.- ++. .|.+|+..|+|.|-
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~---------------------~~e~r~~~v~a~~v~imR~--Nnr-~lf~G~t~G~V~Lr 202 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNT---------------------EKETRTTNVSASGVTIMRY--NNR-NLFCGDTRGTVFLR 202 (1118)
T ss_pred Ccceeecchhhheeeeeccc---------------------ceeeeeeeccCCceEEEEe--cCc-EEEeecccceEEee
Confidence 34566666666777788776 2222323222234554444 344 89999999999999
Q ss_pred ecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC---------CCcEEEEECCCCCCeeEEEecCCCCeEEEEE
Q 018322 258 EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV---------DGHIAIWDTRVGKSALTSFKAHNADVNVISW 328 (358)
Q Consensus 258 d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~---------Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~ 328 (358)
|+++... .+.+..|++.|.++.. .|+ +|++|+. |..|+|||+|+.+ .+.-+.-+.++ .-+.|
T Consensus 203 D~~s~~~----iht~~aHs~siSDfDv--~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~~~~~P-~flrf 273 (1118)
T KOG1275|consen 203 DPNSFET----IHTFDAHSGSISDFDV--QGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQFPYGP-QFLRF 273 (1118)
T ss_pred cCCcCce----eeeeeccccceeeeec--cCC-eEEEeecccccccccccchhhhhhhhhhh-ccCCcccccCc-hhhhh
Confidence 9987433 4789999999987765 465 8999986 5678999999854 22223333332 45688
Q ss_pred eCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 329 NRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 329 ~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
.|.-...++.++..|++.+-|...+..|
T Consensus 274 ~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 274 HPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred cccccceEEEEecccceeeccccccCCC
Confidence 8887778888888999999995554444
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0005 Score=63.68 Aligned_cols=169 Identities=12% Similarity=0.132 Sum_probs=113.6
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeC-CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWAD-TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
....|.+.|..+..+-++ .+++|.+. |..+++||+... ..+..+.----+. .+.|.
T Consensus 48 hFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~---------------------DminmiKL~~lPg-~a~wv 104 (558)
T KOG0882|consen 48 HFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENF---------------------DMINMIKLVDLPG-FAEWV 104 (558)
T ss_pred hhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeecc---------------------chhhhcccccCCC-ceEEe
Confidence 345688899999999888 89999787 999999999762 1111111100111 22332
Q ss_pred C-CC--CCeEEE-EeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC----CC
Q 018322 239 P-IT--TGRLVT-GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV----GK 310 (358)
Q Consensus 239 ~-~~--~~~l~s-gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~----~~ 310 (358)
. .| ...|++ .-.+|.|.++|-....... ...-.-|.++|..+.+++.+. .++|....|.|.-|.... +.
T Consensus 105 ~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~--~~fkklH~sPV~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr 181 (558)
T KOG0882|consen 105 TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD--GYFKKLHFSPVKKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQFPR 181 (558)
T ss_pred cCCCCeeeeEEeecccCCCcEEECCcCCcCcc--ceecccccCceEEEEeecccc-ceeeccccceeEeecCCCcccCcc
Confidence 1 12 113443 3457899999987644322 122233999999999999998 888999999999998762 11
Q ss_pred C-e---------eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 311 S-A---------LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 311 ~-~---------~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
. . +..+........++.|+|++ ..+++-+.|..|+++++++++.
T Consensus 182 ~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 182 TNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchh
Confidence 1 0 11112234457889999999 8899989999999999998763
No 308
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.006 Score=58.15 Aligned_cols=126 Identities=13% Similarity=0.262 Sum_probs=80.3
Q ss_pred CCCcEEEcCCCCCeEEEEeCCCCCCeEEEEe---CCCcEEEEecCC-CCCcccCCCccccCCCcEEEEEECCCCCCEEEE
Q 018322 219 QSPLVKFGGHKDEGYAIDWNPITTGRLVTGD---CNSCIYLWEPAS-DATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (358)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs---~dg~I~lwd~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (358)
..|+-.+ .-...|...+|-|.|. .+++-+ ...++.+|-+.+ ...+. ....+ .....+.|.|+|.|+.+++.
T Consensus 436 dIpve~v-elke~vi~FaWEP~gd-kF~vi~g~~~k~tvsfY~~e~~~~~~~-lVk~~--dk~~~N~vfwsPkG~fvvva 510 (698)
T KOG2314|consen 436 DIPVEVV-ELKESVIAFAWEPHGD-KFAVISGNTVKNTVSFYAVETNIKKPS-LVKEL--DKKFANTVFWSPKGRFVVVA 510 (698)
T ss_pred CCCceee-ecchheeeeeeccCCC-eEEEEEccccccceeEEEeecCCCchh-hhhhh--cccccceEEEcCCCcEEEEE
Confidence 4455444 2356889999999998 665543 235788888874 22222 11222 23567889999999943333
Q ss_pred --EECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC------CCCEEEEeCC
Q 018322 295 --CSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD------DGTFSIHDLR 351 (358)
Q Consensus 295 --~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~------Dg~i~iwDlr 351 (358)
+|..|.+.++|+.... +...-.+.....+.+-|.|.| ++++|++. |.--+||+.+
T Consensus 511 ~l~s~~g~l~F~D~~~a~-~k~~~~~eh~~at~veWDPtG-RYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDYAD-LKDTASPEHFAATEVEWDPTG-RYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred EecccccceEEEecchhh-hhhccCccccccccceECCCC-CEEEEeeehhhhccccceEEEEee
Confidence 3457899999987521 222222222346788999999 99999875 4456677664
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0066 Score=60.72 Aligned_cols=168 Identities=10% Similarity=0.104 Sum_probs=103.9
Q ss_pred EEecCCCc-eeEEEEcCCCCcEEEEEeCCC-----cEEEEeCCCCccccccccccccCCCCCCCCCCCc--EEEcC----
Q 018322 160 RKVAHQGC-VNRIRAMTQNPHICASWADTG-----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL--VKFGG---- 227 (358)
Q Consensus 160 ~~~~H~~~-V~~i~~~p~~~~~lat~s~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---- 227 (358)
-+.++... |.-+.... +..+|++-+.|+ .|+||++......- ....+ ..+..
T Consensus 59 ~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~---------------sP~c~~~~ri~~~~np 122 (933)
T KOG2114|consen 59 GFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN---------------SPQCLYEHRIFTIKNP 122 (933)
T ss_pred hheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC---------------CcceeeeeeeeccCCC
Confidence 34445544 44333333 335777766665 48999998731100 01111 11122
Q ss_pred -CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecC---CCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 228 -HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPA---SDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 228 -h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~---~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
...++.+|+.+.+-. .+|.|-.+|.|.++.-. ..+.. ..-...-..+|+.+.+..++..+ +.+..-..|.+
T Consensus 123 ~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr---~~~~~~~~~pITgL~~~~d~~s~-lFv~Tt~~V~~ 197 (933)
T KOG2114|consen 123 TNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSR---QDYSHRGKEPITGLALRSDGKSV-LFVATTEQVML 197 (933)
T ss_pred CCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccc---eeeeccCCCCceeeEEecCCcee-EEEEecceeEE
Confidence 234788899988876 99999999999988532 21211 11122235789999998888743 34444568999
Q ss_pred EECCCCCCeeEE-EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 304 WDTRVGKSALTS-FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 304 wD~r~~~~~~~~-~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
|.+.. +.+... +..|+..++|.+|++....++++++ .-|.+||..
T Consensus 198 y~l~g-r~p~~~~ld~~G~~lnCss~~~~t~qfIca~~--e~l~fY~sd 243 (933)
T KOG2114|consen 198 YSLSG-RTPSLKVLDNNGISLNCSSFSDGTYQFICAGS--EFLYFYDSD 243 (933)
T ss_pred EEecC-CCcceeeeccCCccceeeecCCCCccEEEecC--ceEEEEcCC
Confidence 99884 444444 6889999999999987734555554 357777764
No 310
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.60 E-value=0.006 Score=56.35 Aligned_cols=196 Identities=16% Similarity=0.116 Sum_probs=109.7
Q ss_pred eEEEEEeecCCCC-----CCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEec
Q 018322 89 TAYFVAGTQAEKP-----SWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVA 163 (358)
Q Consensus 89 ~~~~v~GT~~~~~-----~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (358)
..|+++||.-... ..+.|+++++... ... ...........
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~--------------------------------~~~---~~~l~~i~~~~ 86 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISES--------------------------------PEN---NFKLKLIHSTE 86 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS----------------------------------------EEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcc--------------------------------ccc---ceEEEEEEEEe
Confidence 3799999985432 2278999998411 000 02222345556
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
..++|++|... .+ .++++.+ +.|++|++.... . ..+...+..+ ..+.++... +.
T Consensus 87 ~~g~V~ai~~~-~~-~lv~~~g--~~l~v~~l~~~~-~-----------------l~~~~~~~~~-~~i~sl~~~--~~- 140 (321)
T PF03178_consen 87 VKGPVTAICSF-NG-RLVVAVG--NKLYVYDLDNSK-T-----------------LLKKAFYDSP-FYITSLSVF--KN- 140 (321)
T ss_dssp ESS-EEEEEEE-TT-EEEEEET--TEEEEEEEETTS-S-----------------EEEEEEE-BS-SSEEEEEEE--TT-
T ss_pred ecCcceEhhhh-CC-EEEEeec--CEEEEEEccCcc-c-----------------chhhheecce-EEEEEEecc--cc-
Confidence 78999999988 34 4555443 789999998721 0 1122222222 255555554 44
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC------CC-eeEE-
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG------KS-ALTS- 315 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~------~~-~~~~- 315 (358)
+++.|+.-..|.++..+....... ...-......++++.|-+++. .++.+..+|.|.++..... .. .+..
T Consensus 141 ~I~vgD~~~sv~~~~~~~~~~~l~-~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~ 218 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDEENNKLI-LVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERI 218 (321)
T ss_dssp EEEEEESSSSEEEEEEETTTE-EE-EEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEE
T ss_pred EEEEEEcccCEEEEEEEccCCEEE-EEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeE
Confidence 999999999999886654222111 011112345688899987775 8999999999999977531 11 1221
Q ss_pred E-ecCCCCeEEE---EEeC--CCC-----cEEEEEeCCCCEEE
Q 018322 316 F-KAHNADVNVI---SWNR--LAS-----CLLASGSDDGTFSI 347 (358)
Q Consensus 316 ~-~~h~~~V~~i---~~~p--~~~-----~~lasgs~Dg~i~i 347 (358)
. ...+..|+++ ++.| .+. ..++-++.+|.|.+
T Consensus 219 ~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 219 SSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 1 2234567887 5455 221 24777778898874
No 311
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.57 E-value=0.00023 Score=41.79 Aligned_cols=37 Identities=35% Similarity=0.527 Sum_probs=33.0
Q ss_pred eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 312 ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 312 ~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
++..+..|...|++++|++.+ .++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 456677889999999999988 8999999999999996
No 312
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.0012 Score=62.64 Aligned_cols=138 Identities=20% Similarity=0.284 Sum_probs=88.3
Q ss_pred eEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEE
Q 018322 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (358)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 248 (358)
+-++|+|.| .+|+|--..| |.+|--.. ...+..| .|. .|.-++|||... +|+|=
T Consensus 214 tyv~wSP~G-TYL~t~Hk~G-I~lWGG~~---------------------f~r~~RF-~Hp-~Vq~idfSP~Ek-YLVT~ 267 (698)
T KOG2314|consen 214 TYVRWSPKG-TYLVTFHKQG-IALWGGES---------------------FDRIQRF-YHP-GVQFIDFSPNEK-YLVTY 267 (698)
T ss_pred eeEEecCCc-eEEEEEeccc-eeeecCcc---------------------HHHHHhc-cCC-CceeeecCCccc-eEEEe
Confidence 558999999 7888866655 77886544 2333334 344 577789999987 88875
Q ss_pred eC-----------CCcEEEEecCCCCCcccCCCcccc---CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE
Q 018322 249 DC-----------NSCIYLWEPASDATWNVDPNPFIG---HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 249 s~-----------dg~I~lwd~~~~~~~~~~~~~~~~---h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
+. ...|+|||++++.. . +.|.. ....-.=+.||.++. +||.-.. .+|.||+..+- .++-
T Consensus 268 s~~p~~~~~~d~e~~~l~IWDI~tG~l-k---rsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf-~lld 340 (698)
T KOG2314|consen 268 SPEPIIVEEDDNEGQQLIIWDIATGLL-K---RSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSF-MLLD 340 (698)
T ss_pred cCCccccCcccCCCceEEEEEccccch-h---cceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecCce-eeec
Confidence 42 25899999998533 2 33332 111223368999998 6665544 78999988651 1221
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEe
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs 340 (358)
.-.-.-..|...+|+|.+ .+||--.
T Consensus 341 ~Kslki~gIr~FswsP~~-~llAYwt 365 (698)
T KOG2314|consen 341 KKSLKISGIRDFSWSPTS-NLLAYWT 365 (698)
T ss_pred ccccCCccccCcccCCCc-ceEEEEc
Confidence 112233567888999987 7776543
No 313
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.54 E-value=0.0095 Score=52.70 Aligned_cols=151 Identities=17% Similarity=0.111 Sum_probs=95.2
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC-CCCCCeEEEE
Q 018322 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN-PITTGRLVTG 248 (358)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~~l~sg 248 (358)
++.|.+....++.+-...+.|+.|+.... ....+.... ..++.+. ++ +.|+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----------------------~~~~~~~~~--~~G~~~~~~~--g~l~v~ 57 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----------------------EVEVIDLPG--PNGMAFDRPD--GRLYVA 57 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----------------------EEEEEESSS--EEEEEEECTT--SEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----------------------eEEEEecCC--CceEEEEccC--CEEEEE
Confidence 46788844478888778899999998762 222222222 5667777 44 367777
Q ss_pred eCCCcEEEEecCCCCCcccCCCcc-cc-CCCcEEEEEECCCCCCEEEEEECC--------CcEEEEECCCCCCeeEEEec
Q 018322 249 DCNSCIYLWEPASDATWNVDPNPF-IG-HSASVEDLQWSPTEPDVFASCSVD--------GHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~~~~~-~~-h~~~V~~v~~sp~~~~~las~s~D--------g~I~iwD~r~~~~~~~~~~~ 318 (358)
... .+.++|+.++ ......... .. .....+++++.|+|. ++++.... |.|..++.. + .+..+..
T Consensus 58 ~~~-~~~~~d~~~g-~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~--~~~~~~~ 131 (246)
T PF08450_consen 58 DSG-GIAVVDPDTG-KVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G--KVTVVAD 131 (246)
T ss_dssp ETT-CEEEEETTTT-EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S--EEEEEEE
T ss_pred EcC-ceEEEecCCC-cEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C--eEEEEec
Confidence 754 4566688663 322111111 12 346789999999998 77776654 457777766 2 2333333
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.-...|.|+|+|++..++++-+..+.|..+++..
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA 165 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred CcccccceEECCcchheeecccccceeEEEeccc
Confidence 3456799999999955566777788899988854
No 314
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.00068 Score=66.07 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=85.4
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
.+.--++...+. +++.|+.-|.+++|+-.. +... ..+..+..+.+..++.|+... ++|.|+..|.|.++-+....
T Consensus 35 ~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~-~~~~--~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 35 RVKLTCVDATEE-YLAMGSSAGSVYLYNRHT-GEMR--KLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred eEEEEEeecCCc-eEEEecccceEEEEecCc-hhhh--cccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccC
Confidence 344344455566 999999999999998654 3322 233444556677778888887 99999999999999887633
Q ss_pred CeeEE----E-ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 311 SALTS----F-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 311 ~~~~~----~-~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+-.. . ..|...|++++|++++ ..+++|...|+|.+--|..
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence 22111 1 3478899999999999 9999999999998877765
No 315
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00037 Score=67.09 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=72.1
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEE-EEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVE-DLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
..+.-+.|+|.-. ++|.+.++|.|.+..++.... ..+.-|...++ +++|.|+|. ++|.|-.||+|+|.|+.+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~qRl-----wtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLNWQRL-----WTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEecccee-----EeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccC
Confidence 4678899999998 999999999999988864222 33444555566 999999998 999999999999999998
Q ss_pred CCCeeEEEecCCCCeEEEEEeC
Q 018322 309 GKSALTSFKAHNADVNVISWNR 330 (358)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~~p 330 (358)
+.........-..+|.++-|.+
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCceeccccccccchheeeccc
Confidence 6432222233456788888864
No 316
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.0018 Score=63.98 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=86.0
Q ss_pred EEEecCCCceeEEEEcCCC-----------CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC
Q 018322 159 LRKVAHQGCVNRIRAMTQN-----------PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~-----------~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (358)
.....|+..|+.|+|.|.. .-+||++...|.|.|||+.. ...+..+..
T Consensus 49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~---------------------~s~~~~l~~ 107 (1062)
T KOG1912|consen 49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL---------------------ASVINWLSH 107 (1062)
T ss_pred hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh---------------------hhhhhhhcC
Confidence 3445688999999998753 24788888999999999987 344556777
Q ss_pred CCCCeEEEEeCCCC---CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEE
Q 018322 228 HKDEGYAIDWNPIT---TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (358)
Q Consensus 228 h~~~v~~l~~s~~~---~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (358)
|.+++..++|-+.. ...|++-....+|.+|+..+++.. ..+........|+.+.|.....|..-+..|.+.+.
T Consensus 108 ~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~----Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 108 SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF----WKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee----eccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence 88888999987643 236666666789999998886541 23333345667788888665455555555666665
Q ss_pred EC
Q 018322 305 DT 306 (358)
Q Consensus 305 D~ 306 (358)
+.
T Consensus 184 ~~ 185 (1062)
T KOG1912|consen 184 KD 185 (1062)
T ss_pred ec
Confidence 44
No 317
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.004 Score=59.60 Aligned_cols=207 Identities=15% Similarity=0.101 Sum_probs=113.8
Q ss_pred CCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCC
Q 018322 46 EGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNK 125 (358)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~ 125 (358)
..+....|..-|.......-.|+.++-.|.|+.... .|+ ++..+.. -.|+++++..-
T Consensus 172 ~~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~--------~y~---~f~~~~~-~~i~~~~l~~g----------- 228 (425)
T COG0823 172 PYELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKL--------AYV---SFELGGC-PRIYYLDLNTG----------- 228 (425)
T ss_pred CceEEEEccCCcceeEecccCcceeccccCcCCCce--------EEE---EEecCCC-ceEEEEeccCC-----------
Confidence 344555555577777777888899999999986321 222 3332211 35666665210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 018322 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAES 205 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~ 205 (358)
..+.+ .. -.+.-..-+|+|++..++.+...||...||-+....
T Consensus 229 ---------------------------~~~~i-~~---~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~------ 271 (425)
T COG0823 229 ---------------------------KRPVI-LN---FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG------ 271 (425)
T ss_pred ---------------------------cccee-ec---cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC------
Confidence 01111 22 334444568999998888888888876555444311
Q ss_pred cccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEEC
Q 018322 206 ETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS 285 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s 285 (358)
+.+..+..-.+.-..=.|+|+|..+.++.+..|.-.||-....+... ..+......-..-.|+
T Consensus 272 --------------~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~S 334 (425)
T COG0823 272 --------------KNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWS 334 (425)
T ss_pred --------------CcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCC
Confidence 11222322222223667999999556677777766666554333322 1222222222266899
Q ss_pred CCCCCEEEEEEC-CCc--EEEEECCCCCCeeEEEecCCCCeEEEEEeCCC
Q 018322 286 PTEPDVFASCSV-DGH--IAIWDTRVGKSALTSFKAHNADVNVISWNRLA 332 (358)
Q Consensus 286 p~~~~~las~s~-Dg~--I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~ 332 (358)
|++. .|+..+. +|. |.+.|+..+.. ...-.+......-+|.+++
T Consensus 335 pdG~-~i~~~~~~~g~~~i~~~~~~~~~~--~~~lt~~~~~e~ps~~~ng 381 (425)
T COG0823 335 PDGD-KIVFESSSGGQWDIDKNDLASGGK--IRILTSTYLNESPSWAPNG 381 (425)
T ss_pred CCCC-EEEEEeccCCceeeEEeccCCCCc--EEEccccccCCCCCcCCCC
Confidence 9999 6666664 344 77777766432 2222233333445666666
No 318
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.48 E-value=0.0003 Score=41.30 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=33.3
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
.+...+..|...+.++.|++.+. ++++|+.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 45566778889999999999886 999999999999996
No 319
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.45 E-value=0.013 Score=51.81 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=94.8
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCC--------CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 164 HQGCVNRIRAMTQNPHICASWADT--------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~d--------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.....|.+.+.|+| .+.++.... |.|..++... + +..+.........|
T Consensus 84 ~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~~----------------------~-~~~~~~~~~~pNGi 139 (246)
T PF08450_consen 84 PFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPDG----------------------K-VTVVADGLGFPNGI 139 (246)
T ss_dssp CTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS----------------------E-EEEEEEEESSEEEE
T ss_pred ccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCCC----------------------e-EEEEecCcccccce
Confidence 44688999999999 577765544 4455555542 1 11122223456799
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcc---ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF---IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (358)
+|+|++..++++-+..+.|..+++...+........+ ..-.+..-.+++..++. ++++....+.|.++|.. + ..
T Consensus 140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G-~~ 216 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-G-KL 216 (246)
T ss_dssp EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-S-CE
T ss_pred EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-c-cE
Confidence 9999998344566778899999997543311111122 11223477899999997 88888889999999988 3 45
Q ss_pred eEEEecCCCCeEEEEEe-CCCCcEEEEEe
Q 018322 313 LTSFKAHNADVNVISWN-RLASCLLASGS 340 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~-p~~~~~lasgs 340 (358)
+..+......+++++|. ++...+++|.+
T Consensus 217 ~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 217 LREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 55555444579999994 55546666643
No 320
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.45 E-value=0.0045 Score=62.93 Aligned_cols=124 Identities=18% Similarity=0.210 Sum_probs=81.5
Q ss_pred CCCcEEEcCCCCC-eEEEEeCCCC------CCeEEEEeCCCcEEEEecCCCCCcccC--CCccccCCCcEEEEEECCCCC
Q 018322 219 QSPLVKFGGHKDE-GYAIDWNPIT------TGRLVTGDCNSCIYLWEPASDATWNVD--PNPFIGHSASVEDLQWSPTEP 289 (358)
Q Consensus 219 ~~~~~~~~~h~~~-v~~l~~s~~~------~~~l~sgs~dg~I~lwd~~~~~~~~~~--~~~~~~h~~~V~~v~~sp~~~ 289 (358)
++.+..+..|... |..+ .|+. ....+.|-.+..++.||+|-.+...+. ...+ .......|++-+.+|
T Consensus 514 GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~~G- 589 (794)
T PF08553_consen 514 GKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTEDG- 589 (794)
T ss_pred CcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecCCc-
Confidence 4555666666542 4444 3421 114566777889999999975532221 1111 234567888877776
Q ss_pred CEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 290 DVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 290 ~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.||.|+.+|.||+|| +.+...-..+.+-+.+|..|..+.+|..+||||- ..|.+++.
T Consensus 590 -~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 590 -YIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred -eEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 699999999999999 4444444445677899999999999955555553 46777775
No 321
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00058 Score=63.23 Aligned_cols=165 Identities=12% Similarity=0.028 Sum_probs=114.4
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
.-|...|+.+...-. .++.+++.||.++.|--..-. ...-+..+..|-..+.+|+-+-++
T Consensus 6 ymhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~is------------------GvEfVKhFraHL~~I~sl~~S~dg 65 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRIS------------------GVEFVKHFRAHLGVILSLAVSYDG 65 (558)
T ss_pred hcccceeeeEeeehh--heEEeeecchhhhhcCCCCcc------------------ceeehhhhHHHHHHHHhhhccccc
Confidence 347788887765554 599999999999999765410 123445567788899999999998
Q ss_pred CCeEEEEeC-CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC--CEEEEEECCCcEEEEECCCCCC-eeEEEe
Q 018322 242 TGRLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP--DVFASCSVDGHIAIWDTRVGKS-ALTSFK 317 (358)
Q Consensus 242 ~~~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~--~~las~s~Dg~I~iwD~r~~~~-~~~~~~ 317 (358)
. ++.|++. |..++++|+.+-..... ..+.--.+.+..+ .++... .+-++.-.+|.|.++|-+.... ......
T Consensus 66 ~-L~~Sv~d~Dhs~KvfDvEn~Dminm--iKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 66 W-LFRSVEDPDHSVKVFDVENFDMINM--IKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred e-eEeeccCcccceeEEEeeccchhhh--cccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 7 8888777 99999999976432211 1111112222221 233221 1333444689999999998543 334447
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
-|.++|.++.+++.+ ..++|....|.|.-|...
T Consensus 142 lH~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAE 174 (558)
T ss_pred cccCceEEEEeeccc-cceeeccccceeEeecCC
Confidence 799999999999999 888888888999999887
No 322
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.0056 Score=58.60 Aligned_cols=160 Identities=11% Similarity=0.116 Sum_probs=90.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCC---CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADT---GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
..+..-+|+|++..+....-.. ..+.++++.... ...+..+.++. ..-+|+|++.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~-------------------~~~i~~~~g~~---~~P~fspDG~ 250 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGK-------------------RPVILNFNGNN---GAPAFSPDGS 250 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCc-------------------cceeeccCCcc---CCccCCCCCC
Confidence 4555667788774433332222 348888887621 12222334443 4778999998
Q ss_pred CeEEEEeCCCcEEEE--ecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC
Q 018322 243 GRLVTGDCNSCIYLW--EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 243 ~~l~sgs~dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
.++++...||...|| |+.... . ..+..-.+.-..=.|+|+|..+..+.+..|.-.||-..........+....
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~--~---~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN--L---PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc--c---eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 566677777765555 554432 2 112221122224579999996777777777766665544333334444333
Q ss_pred CCeEEEEEeCCCCcEEEEEe-CCCC--EEEEeCCCC
Q 018322 321 ADVNVISWNRLASCLLASGS-DDGT--FSIHDLRLL 353 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs-~Dg~--i~iwDlr~~ 353 (358)
..-..-.|+|+| .+|+..+ .+|. |.+.|+.+.
T Consensus 326 ~~~~~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 326 GGNSNPVWSPDG-DKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CCCcCccCCCCC-CEEEEEeccCCceeeEEeccCCC
Confidence 333367899999 5555444 3455 666666544
No 323
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.38 E-value=0.017 Score=52.19 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=99.6
Q ss_pred EEecCCCceeEEEEcCCCCcEEEE----EeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICAS----WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat----~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.+.+| -.|++++..+++| .+..|.|-|||... ....+..+..|.-.-+.|
T Consensus 51 HFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~--------------------~~~ri~E~~s~GIGPHel 104 (305)
T PF07433_consen 51 HFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAAR--------------------GYRRIGEFPSHGIGPHEL 104 (305)
T ss_pred EEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcC--------------------CcEEEeEecCCCcChhhE
Confidence 45566 4799999655555 33458899999985 245566777777777788
Q ss_pred EeCCCCCCeEEEEeC-------CCcEE-----------EEecCCCCCcccCCCcc--ccCCCcEEEEEECCCCCCEEEEE
Q 018322 236 DWNPITTGRLVTGDC-------NSCIY-----------LWEPASDATWNVDPNPF--IGHSASVEDLQWSPTEPDVFASC 295 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~-------dg~I~-----------lwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~las~ 295 (358)
.|.|++. .|+++-- .|..+ +.|..++ ... ....+ .-|..+|..+++.+++. +++.+
T Consensus 105 ~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll-~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~ 180 (305)
T PF07433_consen 105 LLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALL-EQVELPPDLHQLSIRHLAVDGDGT-VAFAM 180 (305)
T ss_pred EEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-cee-eeeecCccccccceeeEEecCCCc-EEEEE
Confidence 9999997 6666521 12222 2233331 111 11223 33777899999999987 55444
Q ss_pred ECCCc-------EEEEECCCCCCeeEEE-------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 296 SVDGH-------IAIWDTRVGKSALTSF-------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 296 s~Dg~-------I~iwD~r~~~~~~~~~-------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
-..|. |.+++... .+..+ ..-..-|-+|++++++..+.+|+-.-|.+.+||..+++
T Consensus 181 Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 181 QYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred ecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 43332 33333322 11111 12345688999999994455666667899999998865
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.002 Score=62.95 Aligned_cols=141 Identities=11% Similarity=0.151 Sum_probs=92.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
..|+=-++...+ .+++.|+..|.|++|+..... .......+-.+.+..+..++... ++
T Consensus 34 ~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~--------------------~~~~~~~~~~~~~~~~~vs~~e~-lv 91 (726)
T KOG3621|consen 34 ARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGE--------------------MRKLKNEGATGITCVRSVSSVEY-LV 91 (726)
T ss_pred ceEEEEEeecCC-ceEEEecccceEEEEecCchh--------------------hhcccccCccceEEEEEecchhH-hh
Confidence 333333444444 799999999999999987621 11122223334566777888876 88
Q ss_pred EEEeCCCcEEEEecCCCCCccc-CCCcc-ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC---CCeeEEEecCC
Q 018322 246 VTGDCNSCIYLWEPASDATWNV-DPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG---KSALTSFKAHN 320 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~-~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~---~~~~~~~~~h~ 320 (358)
|.|+..|.|.++.++....... ...++ ..|+..|++++|++++. .|.+|...|.|.+--+.+. ....+.+..-.
T Consensus 92 Aagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 92 AAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 9999999999999877433211 11122 23788999999999999 8999999999998877651 01222233334
Q ss_pred CCeEEEEEe
Q 018322 321 ADVNVISWN 329 (358)
Q Consensus 321 ~~V~~i~~~ 329 (358)
+.|-.|...
T Consensus 171 s~IVQlD~~ 179 (726)
T KOG3621|consen 171 SEIVQLDYL 179 (726)
T ss_pred cceEEeecc
Confidence 556555544
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.37 E-value=0.031 Score=58.10 Aligned_cols=113 Identities=14% Similarity=0.267 Sum_probs=71.5
Q ss_pred EEEEeCCCCCCeEEEE-----eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC---CCcEEEE
Q 018322 233 YAIDWNPITTGRLVTG-----DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV---DGHIAIW 304 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sg-----s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~---Dg~I~iw 304 (358)
++|.|--+|. ++|+. ..-..|++||-. +... ..-......=.+++|-|.|. ++|+-.. |+.|.+|
T Consensus 199 ~~IsWRgDg~-~fAVs~~~~~~~~RkirV~drE--g~Ln---s~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~Ivff 271 (1265)
T KOG1920|consen 199 TSISWRGDGE-YFAVSFVESETGTRKIRVYDRE--GALN---STSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFF 271 (1265)
T ss_pred ceEEEccCCc-EEEEEEEeccCCceeEEEeccc--chhh---cccCcccccccceeecCCCC-eEeeeeecCCCCcEEEE
Confidence 3699999998 88873 333799999965 2211 11111122334689999988 8877543 5678888
Q ss_pred ECCCCCC--eeEEEecCCCCeEEEEEeCCCCcEEEE---EeCCCCEEEEeCCCC
Q 018322 305 DTRVGKS--ALTSFKAHNADVNVISWNRLASCLLAS---GSDDGTFSIHDLRLL 353 (358)
Q Consensus 305 D~r~~~~--~~~~~~~h~~~V~~i~~~p~~~~~las---gs~Dg~i~iwDlr~~ 353 (358)
....... -...+......|..++||.++ .+||. ......|.+|-+.+.
T Consensus 272 ErNGL~hg~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 272 ERNGLRHGEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ecCCccccccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCe
Confidence 6543111 111223333448999999998 78877 444456999987764
No 326
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.31 E-value=0.022 Score=50.17 Aligned_cols=108 Identities=18% Similarity=0.262 Sum_probs=69.5
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCC-Ccccc-CCCcEEEEEECCCC-----CCEEEEEECCCcEEE
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP-NPFIG-HSASVEDLQWSPTE-----PDVFASCSVDGHIAI 303 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~-~~~~~-h~~~V~~v~~sp~~-----~~~las~s~Dg~I~i 303 (358)
.-.-|+|||++. +||.+...|+|+++|+.......... ..+.+ -...|..+.|-+.. ...|+.-...|.++=
T Consensus 45 QWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCc-EEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 456899999998 99999999999999996422211111 11222 23567777775432 235667777888877
Q ss_pred EECCC----CCCeeEEE---ecCCCCeEEEEEeCCCCcEEEEEe
Q 018322 304 WDTRV----GKSALTSF---KAHNADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 304 wD~r~----~~~~~~~~---~~h~~~V~~i~~~p~~~~~lasgs 340 (358)
|-+.. +-...+++ ..+...|+++.++|.. ++|+.||
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG 166 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGG 166 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEec
Confidence 76532 11223333 2346789999999998 6666665
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.00068 Score=67.37 Aligned_cols=108 Identities=16% Similarity=0.285 Sum_probs=80.7
Q ss_pred EEEeCCCCCCeEEEEe----CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 234 AIDWNPITTGRLVTGD----CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs----~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
-..|+|..+ +|++++ ..|.|.||-- ++.... -..+.-| +++++|+|..- +|+.|-.-|.+.+|.....
T Consensus 20 i~SWHPseP-lfAVA~fS~er~GSVtIfad-tGEPqr--~Vt~P~h---atSLCWHpe~~-vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 20 ISSWHPSEP-LFAVASFSPERGGSVTIFAD-TGEPQR--DVTYPVH---ATSLCWHPEEF-VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred ccccCCCCc-eeEEEEecCCCCceEEEEec-CCCCCc--cccccee---hhhhccChHHH-HHhhccccceeEEEecCCc
Confidence 467999988 888875 3578887743 211111 1122223 55699999887 9999999999999998773
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
..-.....|..+|..+.|+++| ..|+|+..-|.|.+|...
T Consensus 92 -e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 92 -ETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -eeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 2333346799999999999999 999999999999999765
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.25 E-value=0.053 Score=47.92 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=92.8
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE--EcCCCCCeEEEEeC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK--FGGHKDEGYAIDWN 238 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~s 238 (358)
+.+-...+..|.|+|+...++|+....+.|..++... +.+.. +.+. ...-+|++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G----------------------~vlr~i~l~g~-~D~EgI~y~ 73 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG----------------------KVLRRIPLDGF-GDYEGITYL 73 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------------------EEEEEE-SS--SSEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC----------------------CEEEEEeCCCC-CCceeEEEE
Confidence 3445567999999998768999999999998888654 22333 3342 356788887
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCccc-------CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC--C
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNV-------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV--G 309 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~-------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~--~ 309 (358)
..+. ++++--.++.+.++++........ .......+...++.|+|+|.+..+|+ +-...-.+||.++. .
T Consensus 74 g~~~-~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 74 GNGR-YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPG 151 (248)
T ss_dssp STTE-EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-
T ss_pred CCCE-EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccC
Confidence 6664 555555689999999854322110 00111235567999999998874554 55566667776654 1
Q ss_pred CCeeEE--E------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 310 KSALTS--F------KAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 310 ~~~~~~--~------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
...+.. . ......+..++++|...++++.......|.++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence 111111 1 123456889999998767887777777777777
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.25 E-value=0.0088 Score=62.00 Aligned_cols=154 Identities=18% Similarity=0.286 Sum_probs=89.8
Q ss_pred eEEEEcCCCCcEEEE-----EeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 169 NRIRAMTQNPHICAS-----WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 169 ~~i~~~p~~~~~lat-----~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
..|.|--+| .++|+ ......|++||....++.. ..+. .+.-.+++|-|.|.
T Consensus 199 ~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drEg~Lns~----------------se~~------~~l~~~LsWkPsgs- 254 (1265)
T KOG1920|consen 199 TSISWRGDG-EYFAVSFVESETGTRKIRVYDREGALNST----------------SEPV------EGLQHSLSWKPSGS- 254 (1265)
T ss_pred ceEEEccCC-cEEEEEEEeccCCceeEEEecccchhhcc----------------cCcc------cccccceeecCCCC-
Confidence 458888888 67777 3334789999987533322 1221 12334899999887
Q ss_pred eEEEEe---CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEE---EECCCcEEEEECCCCCCee-EEE
Q 018322 244 RLVTGD---CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS---CSVDGHIAIWDTRVGKSAL-TSF 316 (358)
Q Consensus 244 ~l~sgs---~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las---~s~Dg~I~iwD~r~~~~~~-~~~ 316 (358)
.+++-. .++.|.++.-+. -....-..++.-....|+.++|+.++. +||. +.....|++|-+..-..-+ ..+
T Consensus 255 ~iA~iq~~~sd~~IvffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l 332 (1265)
T KOG1920|consen 255 LIAAIQCKTSDSDIVFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYHWYLKQEL 332 (1265)
T ss_pred eEeeeeecCCCCcEEEEecCC-ccccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeEEEEEEEE
Confidence 777753 456788887543 111100122333344599999999998 8877 4555569999887633211 112
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
....... +.|+|..+..|..-..+|.+.++|.
T Consensus 333 ~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 333 QFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 2222222 6677755444444435555555543
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.015 Score=58.31 Aligned_cols=156 Identities=8% Similarity=-0.004 Sum_probs=96.6
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCC
Q 018322 173 AMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNS 252 (358)
Q Consensus 173 ~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg 252 (358)
|++++ ..+|.|+.+|.|.+++-.- +.+..+..+...+...-|.-.+.++|++.+.|+
T Consensus 31 ~~s~~-~~vvigt~~G~V~~Ln~s~----------------------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~ 87 (933)
T KOG2114|consen 31 CSSST-GSVVIGTADGRVVILNSSF----------------------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDE 87 (933)
T ss_pred EcCCC-ceEEEeeccccEEEecccc----------------------eeeehheecchhhhhHhhcccCceEEEEEeecC
Confidence 35555 6899999999988877543 333455555555334445555544777776654
Q ss_pred -----cEEEEecCCCCCcc--cCC---C----ccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC---CCCCCeeEE
Q 018322 253 -----CIYLWEPASDATWN--VDP---N----PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT---RVGKSALTS 315 (358)
Q Consensus 253 -----~I~lwd~~~~~~~~--~~~---~----~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~---r~~~~~~~~ 315 (358)
.+++|++....... ... + .+.....++.+++.+.+-. .+|.|-.+|.|..+.- |.......-
T Consensus 88 ~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 88 QGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceee
Confidence 58999996531111 000 1 1222456788899988866 8999999999999842 221111222
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
......+|+.+.+..++...+.. ..-..|.+|.+...
T Consensus 167 ~~~~~~pITgL~~~~d~~s~lFv-~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDGKSVLFV-ATTEQVMLYSLSGR 203 (933)
T ss_pred eccCCCCceeeEEecCCceeEEE-EecceeEEEEecCC
Confidence 23456789999999888442222 23357888888743
No 331
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.0077 Score=57.26 Aligned_cols=125 Identities=12% Similarity=0.147 Sum_probs=80.2
Q ss_pred CCCcEEEcCCCCCeEEEEeCCCCCC------eEEEEeCCCcEEEEecCCCCCcccCCCccccC----CCcEEEEEECCCC
Q 018322 219 QSPLVKFGGHKDEGYAIDWNPITTG------RLVTGDCNSCIYLWEPASDATWNVDPNPFIGH----SASVEDLQWSPTE 288 (358)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~s~~~~~------~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h----~~~V~~v~~sp~~ 288 (358)
++.+....-|.. |.-+++.|+..+ .-+.|-.+..|+-||+|-.+... +...++| .....|++-..+|
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k--l~~~q~kqy~~k~nFsc~aTT~sG 442 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK--LAVVQSKQYSTKNNFSCFATTESG 442 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce--eeeeeccccccccccceeeecCCc
Confidence 455555555554 666677776543 23445568899999998655411 1111222 2345555544444
Q ss_pred CCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 289 PDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 289 ~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
++|.||.+|.||+||- .+...-..+.+-+.+|..|..+.+|..+|+|| +..+.+.|++
T Consensus 443 --~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 443 --YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred --eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 7999999999999997 44444445677888999999999995555554 3466666654
No 332
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.06 E-value=0.2 Score=46.72 Aligned_cols=111 Identities=13% Similarity=0.115 Sum_probs=70.8
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCC-C--ccc-----cCCCcEEEEEECCCCCCEEEEEE---------CCCcEE
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDP-N--PFI-----GHSASVEDLQWSPTEPDVFASCS---------VDGHIA 302 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~-~--~~~-----~h~~~V~~v~~sp~~~~~las~s---------~Dg~I~ 302 (358)
++. ++.+... |+|.+.|+.......... . .+. -....+.-++++|++..+++... ..+.|.
T Consensus 205 dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 205 SGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred CCc-EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 565 6666554 999999975432111000 0 111 12344455999999986666442 125799
Q ss_pred EEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEE-eCCCCEEEEeCCCCC
Q 018322 303 IWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASG-SDDGTFSIHDLRLLK 354 (358)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasg-s~Dg~i~iwDlr~~~ 354 (358)
++|+.+. +.+..+. -...+..|+++|++..+|++. ..++.|.++|+.+++
T Consensus 283 ViD~~t~-kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 283 VVDAKTG-KRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EEECCCC-eEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 9999884 4555543 345789999999994255544 468899999998775
No 333
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.04 E-value=0.017 Score=43.85 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=69.3
Q ss_pred eEEEEe---CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 232 GYAIDW---NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 232 v~~l~~---s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
|++|++ ..++...|++|+.|..|++|+-.. .. ..+. -+..|.+++-...+ .|+.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~---~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IV---AEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EE---EEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeCcc
Confidence 444544 445556899999999999998543 11 2222 35678888766654 799999999999998643
Q ss_pred CCCeeEEEecCCCCeEEEEEe---CCCCcEEEEEeCCCCEEE
Q 018322 309 GKSALTSFKAHNADVNVISWN---RLASCLLASGSDDGTFSI 347 (358)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~~---p~~~~~lasgs~Dg~i~i 347 (358)
.+..++... .++++.+. .+|..-|++|-.+|.|-+
T Consensus 73 ---RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 ---RLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---eeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 345554333 36666554 345457999999998743
No 334
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.99 E-value=0.047 Score=41.49 Aligned_cols=102 Identities=10% Similarity=0.117 Sum_probs=67.2
Q ss_pred eeEEEEcC---CCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 168 VNRIRAMT---QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 168 V~~i~~~p---~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
|++++++. ++.+-|++||+|..|+||+=.. .+..+.. ...+.+|.-... ++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------~~~Ei~e-~~~v~~L~~~~~--~~ 55 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------------------IVAEITE-TDKVTSLCSLGG--GR 55 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------EEEEEec-ccceEEEEEcCC--CE
Confidence 55666654 4457889999999999998543 2333333 346777776655 38
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEEC---CCCCCEEEEEECCCcEE
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS---PTEPDVFASCSVDGHIA 302 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s---p~~~~~las~s~Dg~I~ 302 (358)
|+-|-.+|+|-+|+-.. ..|.. .. +..+.++++. -++..-|++|-.+|.|-
T Consensus 56 F~Y~l~NGTVGvY~~~~-RlWRi-----KS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 56 FAYALANGTVGVYDRSQ-RLWRI-----KS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEecCCEEEEEeCcc-eeeee-----cc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 99999999999998644 44442 22 2235555543 34444688998888874
No 335
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.94 E-value=0.035 Score=56.69 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=68.3
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 018322 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (358)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~ 259 (358)
-...|-.+..+..||.+...+.+. ......+ .......|++-+.. |+||+|+.+|.|+|||-
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v---------------~~~~k~Y-~~~~~Fs~~aTt~~--G~iavgs~~G~IRLyd~ 605 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLV---------------DSQSKQY-SSKNNFSCFATTED--GYIAVGSNKGDIRLYDR 605 (794)
T ss_pred ceEEEECCCceEEeccCCCCCcee---------------ecccccc-ccCCCceEEEecCC--ceEEEEeCCCcEEeecc
Confidence 344566778899999886321110 0001111 22345667766554 58999999999999994
Q ss_pred CCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 260 ASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
. +.. ....+.+-..+|..|..+.+|..+||||- ..|.|+++
T Consensus 606 -~-g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 606 -L-GKR--AKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred -c-chh--hhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 3 221 23556777899999999999997777765 56777775
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.94 E-value=0.027 Score=53.40 Aligned_cols=176 Identities=15% Similarity=0.118 Sum_probs=91.1
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC---
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP--- 239 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--- 239 (358)
...|.|++++.+.-| ++|.|..+|.+.|.|++...--+...- .....-......+++|.|+-
T Consensus 84 ~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i-------------~~~~~~~~~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 84 AKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENI-------------RESFLSKSSSSYVTSIEFSVMTL 148 (395)
T ss_dssp --S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEG-------------GG--T-SS----EEEEEEEEEE-
T ss_pred ccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccc-------------cccccccccccCeeEEEEEEEec
Confidence 347999999999887 999999999999999976322111000 00000011223577788762
Q ss_pred CCCC----eEEEEeCCCcEEEEecC--CCCCcccCCCcc-ccCCCcEEEEE-ECCC-CC------------------CEE
Q 018322 240 ITTG----RLVTGDCNSCIYLWEPA--SDATWNVDPNPF-IGHSASVEDLQ-WSPT-EP------------------DVF 292 (358)
Q Consensus 240 ~~~~----~l~sgs~dg~I~lwd~~--~~~~~~~~~~~~-~~h~~~V~~v~-~sp~-~~------------------~~l 292 (358)
.+.+ +|++|...|.+.+|.+. ..+.+.+..... ..+.+.|..|. ++.+ +. .-+
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred CCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 2222 78999999999999875 223333211111 23455555554 2211 10 123
Q ss_pred EEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEe-----CCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 293 ASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN-----RLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 293 as~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~-----p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+.......||++.....+ ..+......-....+.+- ..+ ..|++-..+|.|+++.+-.++.
T Consensus 229 vVvvSe~~irv~~~~~~k-~~~K~~~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKSK-GAHKSFDDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EEEE-SSEEEEE-TT----EEEEE-SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--E
T ss_pred EEEEcccceEEEeCCCCc-ccceeeccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCchH
Confidence 444447889999887743 333332222223344442 234 7788888999999999987653
No 337
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.88 E-value=0.0038 Score=53.21 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=67.9
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCC--EEEEEECCCcEEEEECCCCCCeeEEEecCC-
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD--VFASCSVDGHIAIWDTRVGKSALTSFKAHN- 320 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~--~las~s~Dg~I~iwD~r~~~~~~~~~~~h~- 320 (358)
.++.|+.+|.|.+|..+..+... ..+..-...|.+. -|.++. +..+++.||.||.|.+.-. +.+-....|+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~---d~~~s~~e~i~~~--Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~ 145 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHS---DRVCSGEESIDLG--IPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNF 145 (238)
T ss_pred eEEeecccceEEEecCCccchHH---Hhhhcccccceec--cccccccceeEEeccCCceeeeccccC-ceeeeeccccC
Confidence 79999999999999987433311 1111112223222 233333 8888999999999999864 3444445566
Q ss_pred CCeEEEEEeCCCCcEEEEE--eCCCCEEEEeCCCCC
Q 018322 321 ADVNVISWNRLASCLLASG--SDDGTFSIHDLRLLK 354 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasg--s~Dg~i~iwDlr~~~ 354 (358)
.++.....+..+ .+|+.+ |.|..++.|++....
T Consensus 146 ~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 146 ESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred CCcceeEEecCC-ceEEeeccccchhhhhcchhhhh
Confidence 556555566556 677777 888888999887654
No 338
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.84 E-value=0.033 Score=53.92 Aligned_cols=124 Identities=11% Similarity=0.195 Sum_probs=76.2
Q ss_pred CCCCCeEEEEeCCCCCC---eEEEEeCCCcEEEEecCCC----CCcccCCCccccCCCc--EEEEEECCCCCCEEEEEEC
Q 018322 227 GHKDEGYAIDWNPITTG---RLVTGDCNSCIYLWEPASD----ATWNVDPNPFIGHSAS--VEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~---~l~sgs~dg~I~lwd~~~~----~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~las~s~ 297 (358)
|.-.-|+++.|.|-+.. .|++.-..+.|.+|.+-.. +++......-.+..-+ -..+.|||... +|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEec
Confidence 44457899999997421 4555556889999998632 2222110000000111 13467999998 7766665
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
...-.+++++.....+..=-...+.|.|.+|.++|.++++..+..=.-+|||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 555556777765444432224456799999999997777666665567889854
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.82 E-value=0.0026 Score=63.44 Aligned_cols=105 Identities=18% Similarity=0.284 Sum_probs=76.6
Q ss_pred EEEcCCCCcEEEEEeC----CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE--EEcCCCCCeEEEEeCCCCCCe
Q 018322 171 IRAMTQNPHICASWAD----TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV--KFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 171 i~~~p~~~~~lat~s~----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~s~~~~~~ 244 (358)
+.|+|..| ++|.++- .|.|.||-=.. .|.. +..-| +++|+|+|..- .
T Consensus 21 ~SWHPseP-lfAVA~fS~er~GSVtIfadtG----------------------EPqr~Vt~P~h---atSLCWHpe~~-v 73 (1416)
T KOG3617|consen 21 SSWHPSEP-LFAVASFSPERGGSVTIFADTG----------------------EPQRDVTYPVH---ATSLCWHPEEF-V 73 (1416)
T ss_pred cccCCCCc-eeEEEEecCCCCceEEEEecCC----------------------CCCccccccee---hhhhccChHHH-H
Confidence 46788875 6665553 46788775333 2222 12222 45799999987 8
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
|++|=.-|.+.+|...+.... .....|+.+|.-+.||++|. +++++..=|.|.+|...
T Consensus 74 La~gwe~g~~~v~~~~~~e~h----tv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTETH----TVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HhhccccceeEEEecCCceee----eeccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 999999999999998663321 22345999999999999998 99999999999999664
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.44 E-value=0.49 Score=45.64 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=77.7
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
...-....+.++|.+ ++++. ..+|.-.|+.... ... .. .+.+..+.|.+.
T Consensus 30 ~~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~---------------------~r~--k~---~G~g~~~vw~~~-- 79 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALA---------------------WRN--KA---FGSGLSFVWSSR-- 79 (443)
T ss_dssp E-SS--SEEEE-TTS-SEEEE-EETTEEEEEETTT---------------------TEE--EE---EEE-SEEEE-TS--
T ss_pred CCCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccC---------------------Ccc--cc---cCceeEEEEecC--
Confidence 345568899999999 56666 5567777877332 111 11 134567889983
Q ss_pred CeEEEEeCCCcEEEE-ecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 243 GRLVTGDCNSCIYLW-EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 243 ~~l~sgs~dg~I~lw-d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
+.+|+-...++|.++ ++..... ..+.. ...+..|-- |. +|+..+.+ .|.+||..++ ..+.++...
T Consensus 80 n~yAv~~~~~~I~I~kn~~~~~~-----k~i~~-~~~~~~If~---G~-LL~~~~~~-~i~~yDw~~~-~~i~~i~v~-- 145 (443)
T PF04053_consen 80 NRYAVLESSSTIKIYKNFKNEVV-----KSIKL-PFSVEKIFG---GN-LLGVKSSD-FICFYDWETG-KLIRRIDVS-- 145 (443)
T ss_dssp SEEEEE-TTS-EEEEETTEE-TT-----------SS-EEEEE----SS-SEEEEETT-EEEEE-TTT---EEEEESS---
T ss_pred ccEEEEECCCeEEEEEcCccccc-----eEEcC-CcccceEEc---Cc-EEEEECCC-CEEEEEhhHc-ceeeEEecC--
Confidence 378888888999996 4432110 12211 123555533 66 66666544 8999999984 566666433
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.|..+.|++++ .++|..+.+ .+.|++.
T Consensus 146 ~vk~V~Ws~~g-~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 146 AVKYVIWSDDG-ELVALVTKD-SIYILKY 172 (443)
T ss_dssp E-EEEEE-TTS-SEEEEE-S--SEEEEEE
T ss_pred CCcEEEEECCC-CEEEEEeCC-eEEEEEe
Confidence 38999999999 788877755 6766653
No 341
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.36 E-value=0.014 Score=37.18 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=29.7
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
....|.+++|+|.. .+||.|..+|.|.|+.+ +++
T Consensus 10 l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCc
Confidence 34569999999999 89999999999999998 544
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.35 E-value=0.12 Score=51.09 Aligned_cols=100 Identities=8% Similarity=0.020 Sum_probs=66.6
Q ss_pred CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-----------eeEEEecC
Q 018322 251 NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-----------ALTSFKAH 319 (358)
Q Consensus 251 dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-----------~~~~~~~h 319 (358)
++.|.+.|.++..........+..-......+.++|++.++++++..+.+|.|.|+..... .+..+..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 4567888876510000001122223456677999999998888888899999999987432 1222222
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
...-...+|.++| +.+.|-.-|.+|..|++.+
T Consensus 374 GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 2233456899998 7888888999999999875
No 343
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.35 E-value=0.24 Score=46.79 Aligned_cols=132 Identities=15% Similarity=0.116 Sum_probs=76.9
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 018322 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (358)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~ 259 (358)
.+.+++.+|.++.||... .+.+..... ....... ..+. .++.++.+|.|+.+|.
T Consensus 243 ~vy~~~~~g~l~a~d~~t---------------------G~~~W~~~~--~~~~~p~--~~~~-~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRS---------------------GRVLWKRDA--SSYQGPA--VDDN-RLYVTDADGVVVALDR 296 (377)
T ss_pred EEEEEEcCCEEEEEECCC---------------------CcEEEeecc--CCccCce--EeCC-EEEEECCCCeEEEEEC
Confidence 555667788899999865 222222211 0111111 1233 7888888999999999
Q ss_pred CCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEE-EEEeCCCCcEEE
Q 018322 260 ASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV-ISWNRLASCLLA 337 (358)
Q Consensus 260 ~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~-i~~~p~~~~~la 337 (358)
.++.. |.. ..+.+. .+..... .+. .+++++.+|.|+++|.+++ +.+.++..+...+.. ..+. ++ .|+
T Consensus 297 ~tG~~~W~~--~~~~~~--~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG-~~~~~~~~~~~~~~~sp~~~-~~--~l~ 365 (377)
T TIGR03300 297 RSGSELWKN--DELKYR--QLTAPAV--VGG-YLVVGDFEGYLHWLSREDG-SFVARLKTDGSGIASPPVVV-GD--GLL 365 (377)
T ss_pred CCCcEEEcc--ccccCC--ccccCEE--ECC-EEEEEeCCCEEEEEECCCC-CEEEEEEcCCCccccCCEEE-CC--EEE
Confidence 76432 211 111111 1111111 244 7888999999999999885 466666656544322 2333 23 477
Q ss_pred EEeCCCCEEEE
Q 018322 338 SGSDDGTFSIH 348 (358)
Q Consensus 338 sgs~Dg~i~iw 348 (358)
.++.||.|..|
T Consensus 366 v~~~dG~l~~~ 376 (377)
T TIGR03300 366 VQTRDGDLYAF 376 (377)
T ss_pred EEeCCceEEEe
Confidence 78889998775
No 344
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.29 E-value=0.66 Score=40.28 Aligned_cols=101 Identities=21% Similarity=0.160 Sum_probs=58.7
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCC----C------cE-EEEEECCCCCCEEEEEECCCc-EEEEECCC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS----A------SV-EDLQWSPTEPDVFASCSVDGH-IAIWDTRV 308 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~----~------~V-~~v~~sp~~~~~las~s~Dg~-I~iwD~r~ 308 (358)
+. .++.+..++.|..+|+.++.. . ..+.... . .+ ..+.+. ++ .+..++.++. +.+ |+.+
T Consensus 122 ~~-~~~~~~~~g~l~~~d~~tG~~-~---w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~g~~~~~-d~~t 192 (238)
T PF13360_consen 122 GD-RLYVGTSSGKLVALDPKTGKL-L---WKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSSGDGRVVAV-DLAT 192 (238)
T ss_dssp TT-EEEEEETCSEEEEEETTTTEE-E---EEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEECCTSSEEEE-ETTT
T ss_pred cC-EEEEEeccCcEEEEecCCCcE-E---EEeecCCCCCCcceeeecccccceEEE-CC--EEEEEcCCCeEEEE-ECCC
Confidence 44 788888899999999987433 1 1111111 1 11 223333 33 4555666664 566 9998
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 309 GKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+. .+.... ...+..+ ....+ ..|+.++.++.|.+||+++++.
T Consensus 193 g~-~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 193 GE-KLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp TE-EEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEEETTTTEE
T ss_pred CC-EEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCCCCE
Confidence 64 333322 2223332 34555 5666666899999999999864
No 345
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.16 E-value=0.039 Score=52.36 Aligned_cols=182 Identities=10% Similarity=0.063 Sum_probs=93.8
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc---cccccc-------------------ccCCCCCCCCCCCcEE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNAL---AESETI-------------------VGQGAPQVSNQSPLVK 224 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~ 224 (358)
.|+.+.|++.. .-||+|...|.|.||.+....... ...... ......-.....|...
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 57889999987 578889999999999876532211 000000 0000000012345566
Q ss_pred EcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccc------cCCCcEEEEEECC---CC----CCE
Q 018322 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI------GHSASVEDLQWSP---TE----PDV 291 (358)
Q Consensus 225 ~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~------~h~~~V~~v~~sp---~~----~~~ 291 (358)
+....++|++++.|.-| ++|.|..+|.+.|.|+|.+.... ...+. .....|+++.|+. .+ .-+
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~--~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIY--NENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEE--EEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEe--eccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 66678899999998664 99999999999999997643211 11111 1345688888862 11 126
Q ss_pred EEEEECCCcEEEEECCC-C-CC-ee---EEEecCCCCeEEEE-EeCCC--------------------CcEEEEEeCCCC
Q 018322 292 FASCSVDGHIAIWDTRV-G-KS-AL---TSFKAHNADVNVIS-WNRLA--------------------SCLLASGSDDGT 344 (358)
Q Consensus 292 las~s~Dg~I~iwD~r~-~-~~-~~---~~~~~h~~~V~~i~-~~p~~--------------------~~~lasgs~Dg~ 344 (358)
++.|...|.+.+|.+-- . .. .+ .....+.+.|..|. |+.+. +.+++.+ .+..
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~ 236 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESD 236 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccc
Confidence 78888999999998752 1 11 11 11124566666554 43221 1244444 3567
Q ss_pred EEEEeCCCCC
Q 018322 345 FSIHDLRLLK 354 (358)
Q Consensus 345 i~iwDlr~~~ 354 (358)
++|+.+-+.+
T Consensus 237 irv~~~~~~k 246 (395)
T PF08596_consen 237 IRVFKPPKSK 246 (395)
T ss_dssp EEEE-TT---
T ss_pred eEEEeCCCCc
Confidence 8888876543
No 346
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.05 E-value=0.33 Score=45.21 Aligned_cols=104 Identities=8% Similarity=-0.062 Sum_probs=63.8
Q ss_pred CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEE-e---------CCCcEEEE
Q 018322 188 GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG-D---------CNSCIYLW 257 (358)
Q Consensus 188 g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg-s---------~dg~I~lw 257 (358)
++|.+.|... .+.+..+..-..+- .+ .+|++. .|+++ + .+..|.+|
T Consensus 27 ~~v~ViD~~~---------------------~~v~g~i~~G~~P~-~~-~spDg~-~lyva~~~~~R~~~G~~~d~V~v~ 82 (352)
T TIGR02658 27 TQVYTIDGEA---------------------GRVLGMTDGGFLPN-PV-VASDGS-FFAHASTVYSRIARGKRTDYVEVI 82 (352)
T ss_pred ceEEEEECCC---------------------CEEEEEEEccCCCc-ee-ECCCCC-EEEEEeccccccccCCCCCEEEEE
Confidence 7899999887 34444444322222 34 899998 55555 4 47899999
Q ss_pred ecCCCCCcccCCCc---cccCCCcEEEEEECCCCCCEEEEEEC-CCcEEEEECCCCCCeeEEE
Q 018322 258 EPASDATWNVDPNP---FIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 258 d~~~~~~~~~~~~~---~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~~~~ 316 (358)
|+.+.......... ..........++++|+++.++++--. +..|.+.|+.+. +.+..+
T Consensus 83 D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~-kvv~ei 144 (352)
T TIGR02658 83 DPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK-AFVRMM 144 (352)
T ss_pred ECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC-cEEEEE
Confidence 99874332110100 00012334578999999944544434 899999999984 444444
No 347
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.042 Score=56.58 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=69.6
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.++.|+..|.|.+.|.+..-.+. ..-..-.++|++++|+.+|. .++.|-.+|.|.+||+..+ ..+..+..|..+.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~---~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL---HQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRA-KILKVITEHGAPV 175 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh---hcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCC-cceeeeeecCCcc
Confidence 78999999999999886521111 11112357899999999998 9999999999999999874 4666666565554
Q ss_pred EEE---EEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 324 NVI---SWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 324 ~~i---~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
..+ .|..++ ..++++..-|. +|.+
T Consensus 176 t~vi~v~~t~~n-S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQN-SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence 443 344455 47777776675 5554
No 348
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.95 E-value=0.024 Score=36.09 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=29.1
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRS 197 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~ 197 (358)
....|.++.|+|.. .++|.++.+|.|.||.++-
T Consensus 10 l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 10 LPSRVSCMSWCPTM-DLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCcEEEEEECCCC-CEEEEEECCCeEEEEECCC
Confidence 34679999999999 7999999999999999854
No 349
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.92 E-value=0.29 Score=44.64 Aligned_cols=157 Identities=16% Similarity=0.217 Sum_probs=75.7
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcE-EEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHV-QVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
..-.+.++.+..++++ .++|+++. |.+ .-|+-... ...+.. ..-...+.+|.|.|+
T Consensus 141 ~~~~gs~~~~~r~~dG-~~vavs~~-G~~~~s~~~G~~-------------------~w~~~~--r~~~~riq~~gf~~~ 197 (302)
T PF14870_consen 141 SETSGSINDITRSSDG-RYVAVSSR-GNFYSSWDPGQT-------------------TWQPHN--RNSSRRIQSMGFSPD 197 (302)
T ss_dssp -S----EEEEEE-TTS--EEEEETT-SSEEEEE-TT-S-------------------S-EEEE----SSS-EEEEEE-TT
T ss_pred cCCcceeEeEEECCCC-cEEEEECc-ccEEEEecCCCc-------------------cceEEc--cCccceehhceecCC
Confidence 3445888888889988 67777544 554 46665431 122222 223468999999999
Q ss_pred CCCeEEEEeCCCcEEEEec-CCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE--e
Q 018322 241 TTGRLVTGDCNSCIYLWEP-ASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--K 317 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~-~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--~ 317 (358)
+. +.+ ....|.|+.=+. .....|.....+.....-.+.+++|.+.+. ++|+|+. |.+.. ....++.-...- .
T Consensus 198 ~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg~-G~l~~-S~DgGktW~~~~~~~ 272 (302)
T PF14870_consen 198 GN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGGS-GTLLV-STDGGKTWQKDRVGE 272 (302)
T ss_dssp S--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEEST-T-EEE-ESSTTSS-EE-GGGT
T ss_pred CC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeCC-ccEEE-eCCCCccceECcccc
Confidence 75 444 447888888772 222233321222222334589999999877 7776664 44433 333333221111 1
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEE
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIH 348 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iw 348 (358)
.-.+.++.|.|.... .-++.| .+|.|--|
T Consensus 273 ~~~~n~~~i~f~~~~-~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPD-KGFVLG-QDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETT-EEEEE--STTEEEEE
T ss_pred CCCCceEEEEEcCCC-ceEEEC-CCcEEEEe
Confidence 224457888887655 556655 67876554
No 350
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.91 E-value=0.13 Score=51.85 Aligned_cols=138 Identities=11% Similarity=0.171 Sum_probs=87.4
Q ss_pred CCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC--CC
Q 018322 164 HQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN--PI 240 (358)
Q Consensus 164 H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~~ 240 (358)
-+..||-|+...-+ ..+|+.|.+||.|.+|.+..-...+.......... ......+|.+.+... ..+|+|+++ ..
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~-~~r~~i~P~f~~~v~-~SaWGLdIh~~~~ 176 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG-FSRLKIKPFFHLRVG-ASAWGLDIHDYKK 176 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc-cccccCCCCeEeecC-CceeEEEEEecCc
Confidence 45678888776544 46899999999999998865322221110000000 000134566666543 489999998 65
Q ss_pred CCCeEEEEeCCCcEEEEecCCC-CCcccCCCccccCCCcEEEEEECCCC--CC---EEEEEECCCcEEEEEC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASD-ATWNVDPNPFIGHSASVEDLQWSPTE--PD---VFASCSVDGHIAIWDT 306 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp~~--~~---~las~s~Dg~I~iwD~ 306 (358)
.. +||++++...|.||-+... .+.. ...-..|...|-+|+|-++. .. .+++++-.|.+.+|++
T Consensus 177 ~r-lIAVSsNs~~VTVFaf~l~~~r~~--~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 177 SR-LIAVSSNSQEVTVFAFALVDERFY--HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ce-EEEEecCCceEEEEEEeccccccc--cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 65 8999999999988876542 1111 11122356678899997755 22 6778888999999888
No 351
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.90 E-value=1.2 Score=40.32 Aligned_cols=143 Identities=17% Similarity=0.186 Sum_probs=88.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCc-EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 166 GCVNRIRAMTQNPHICASWADTGH-VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~-V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.....+..+|..+..+|.+-.-|+ ..+||.......... ...+-..|.||. .||++|. +
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-------------~a~~gRHFyGHg------~fs~dG~-~ 64 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-------------WAPPGRHFYGHG------VFSPDGR-L 64 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-------------cCCCCCEEecCE------EEcCCCC-E
Confidence 344567788877678888888776 668888763211000 123334566663 6999998 8
Q ss_pred EEEEe-----CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-----------------CCcEE
Q 018322 245 LVTGD-----CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-----------------DGHIA 302 (358)
Q Consensus 245 l~sgs-----~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-----------------Dg~I~ 302 (358)
|++.- ..|.|-|||....-.. ...+..|.-.-..+.|.|+++++++.-+- +.++.
T Consensus 65 LytTEnd~~~g~G~IgVyd~~~~~~r---i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~ 141 (305)
T PF07433_consen 65 LYTTENDYETGRGVIGVYDAARGYRR---IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLV 141 (305)
T ss_pred EEEeccccCCCcEEEEEEECcCCcEE---EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceE
Confidence 87763 3589999999732221 35566677777788999999734433221 22344
Q ss_pred EEECCCCCCeeEE--E--ecCCCCeEEEEEeCCC
Q 018322 303 IWDTRVGKSALTS--F--KAHNADVNVISWNRLA 332 (358)
Q Consensus 303 iwD~r~~~~~~~~--~--~~h~~~V~~i~~~p~~ 332 (358)
+.|.+++. .+.. + ..|...|..+++.++|
T Consensus 142 ~ld~~sG~-ll~q~~Lp~~~~~lSiRHLa~~~~G 174 (305)
T PF07433_consen 142 YLDARSGA-LLEQVELPPDLHQLSIRHLAVDGDG 174 (305)
T ss_pred EEecCCCc-eeeeeecCccccccceeeEEecCCC
Confidence 44555532 2322 2 3366678888888888
No 352
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.27 Score=47.17 Aligned_cols=113 Identities=13% Similarity=0.161 Sum_probs=73.3
Q ss_pred eeEEEEcCCC------CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC----CCeEEEEe
Q 018322 168 VNRIRAMTQN------PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK----DEGYAIDW 237 (358)
Q Consensus 168 V~~i~~~p~~------~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~ 237 (358)
|+-+.+.|+. +..-..|-.+..|.-||.+-+.. ..+....+|. ....|++
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------------------~kl~~~q~kqy~~k~nFsc~a- 437 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------------------NKLAVVQSKQYSTKNNFSCFA- 437 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCc-------------------ceeeeeeccccccccccceee-
Confidence 7777777765 11223456777888899875321 1222222332 2333443
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
..+.|++++||.+|.|+|||- .+.. . ...+.+-..+|..|..+.+|..+|+|| +..+.|.+++
T Consensus 438 -TT~sG~IvvgS~~GdIRLYdr-i~~~-A--KTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 438 -TTESGYIVVGSLKGDIRLYDR-IGRR-A--KTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred -ecCCceEEEeecCCcEEeehh-hhhh-h--hhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 345569999999999999996 3222 1 356788889999999999998555544 5677777765
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.80 E-value=0.63 Score=42.88 Aligned_cols=148 Identities=12% Similarity=0.087 Sum_probs=88.4
Q ss_pred cEEEEEeC----------CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEE
Q 018322 179 HICASWAD----------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (358)
Q Consensus 179 ~~lat~s~----------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 248 (358)
.+|+.|+. .|.|.+|++....... ...+.+.. ....++|++|+-- + ++|+.|
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~--------------~~l~~i~~-~~~~g~V~ai~~~--~-~~lv~~ 104 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENN--------------FKLKLIHS-TEVKGPVTAICSF--N-GRLVVA 104 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-------------------EEEEEEE-EEESS-EEEEEEE--T-TEEEEE
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccc--------------eEEEEEEE-EeecCcceEhhhh--C-CEEEEe
Confidence 56666654 2889999998730000 00111111 2235688888765 3 366666
Q ss_pred eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE--ecCCCCeEEE
Q 018322 249 DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--KAHNADVNVI 326 (358)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--~~h~~~V~~i 326 (358)
. .+.|++|++....... ...+......+.++... +. +++.|..-..|.++..+.....+..+ ......+.++
T Consensus 105 ~-g~~l~v~~l~~~~~l~--~~~~~~~~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~ 178 (321)
T PF03178_consen 105 V-GNKLYVYDLDNSKTLL--KKAFYDSPFYITSLSVF--KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAA 178 (321)
T ss_dssp E-TTEEEEEEEETTSSEE--EEEEE-BSSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEE
T ss_pred e-cCEEEEEEccCcccch--hhheecceEEEEEEecc--cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEE
Confidence 5 5799999998744222 12222233466666655 44 88899988888888554422223333 3345568888
Q ss_pred EEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 327 SWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 327 ~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.|-+++ ..++.+..+|.|.++...
T Consensus 179 ~~l~d~-~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 179 EFLVDE-DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred EEecCC-cEEEEEcCCCeEEEEEEC
Confidence 898777 589999999999998775
No 354
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.038 Score=56.87 Aligned_cols=96 Identities=15% Similarity=0.201 Sum_probs=65.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
..+|.|+..|.|..+|++.. ..+...-..-+++|++++|+.+|. +++.|-.+|.|.+||
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n--------------------L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D 158 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN--------------------LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWD 158 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc--------------------cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEE
Confidence 57888999999999998872 233222222346999999999998 999999999999999
Q ss_pred cCCCCCcccCCCccccCCCcEEE---EEECCCCCCEEEEEECCCc
Q 018322 259 PASDATWNVDPNPFIGHSASVED---LQWSPTEPDVFASCSVDGH 300 (358)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~---v~~sp~~~~~las~s~Dg~ 300 (358)
+..... . +.+..|..+++. +.|..++. .+.++...|.
T Consensus 159 ~~~~k~-l---~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs 198 (1206)
T KOG2079|consen 159 MHRAKI-L---KVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS 198 (1206)
T ss_pred ccCCcc-e---eeeeecCCccceEEEEEEeCCCc-EEEEccCCCc
Confidence 976332 2 334444444333 33333443 6777777775
No 355
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.74 E-value=1.5 Score=41.90 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=86.3
Q ss_pred eeEEEEcCCCCcEEEEEeCCCc----EEEEeCCCCccccccccccccCCCCCCCCCCCcE-EEcCCCCCeEEEEeCCCCC
Q 018322 168 VNRIRAMTQNPHICASWADTGH----VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~----V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~ 242 (358)
+..+.++|++..++.+.+..|. |+++|+.+. +.+. .+.. .....+.|.+++.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---------------------~~l~d~i~~--~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---------------------KFLPDGIEN--PKFSSVSWSDDGK 182 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---------------------EEEEEEEEE--EESEEEEECTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---------------------cCcCCcccc--cccceEEEeCCCC
Confidence 3456789999555555455554 999999872 2221 1111 1222499999988
Q ss_pred CeEEEEeCC----------CcEEEEecCCCCCcccCCCccccCC-Cc-EEEEEECCCCCCEEEEEECCCc---EEEEECC
Q 018322 243 GRLVTGDCN----------SCIYLWEPASDATWNVDPNPFIGHS-AS-VEDLQWSPTEPDVFASCSVDGH---IAIWDTR 307 (358)
Q Consensus 243 ~~l~sgs~d----------g~I~lwd~~~~~~~~~~~~~~~~h~-~~-V~~v~~sp~~~~~las~s~Dg~---I~iwD~r 307 (358)
+++.+.... ..|++|.+.+....- ...|.... .. ...+.++++++.+|+......+ +.+.|+.
T Consensus 183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d--~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED--ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred EEEEEEeCcccccccCCCCcEEEEEECCCChHhC--eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 666665333 237788875532211 12233322 22 6688999999966766665544 7788887
Q ss_pred CC---CCeeEEEecCCCCe-EEEEEeCCCCcEEEEEe---CCCCEEEEeCCCCC
Q 018322 308 VG---KSALTSFKAHNADV-NVISWNRLASCLLASGS---DDGTFSIHDLRLLK 354 (358)
Q Consensus 308 ~~---~~~~~~~~~h~~~V-~~i~~~p~~~~~lasgs---~Dg~i~iwDlr~~~ 354 (358)
.. ......+......+ ..+... .+ .+++... ..+.|.-.++.+..
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTS
T ss_pred ccCCCcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccc
Confidence 63 22333343333334 334444 34 4444332 24567667776654
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.96 Score=42.89 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=100.2
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE-EEcCCCCCeEEEEeCCCCCCeE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~~l 245 (358)
.-+.+.+++.+....++...+..|.+.|... ..... ...+. ....+++++++. .+
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~---------------------~~~~~~~~vG~--~P~~~~~~~~~~-~v 130 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT---------------------NTVLGSIPVGL--GPVGLAVDPDGK-YV 130 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcc---------------------cceeeEeeecc--CCceEEECCCCC-EE
Confidence 3456778888877888877788999999554 11111 12222 566899999997 55
Q ss_pred EEEeC---CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE------E
Q 018322 246 VTGDC---NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS------F 316 (358)
Q Consensus 246 ~sgs~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~------~ 316 (358)
..+.. ++++.+.|..+..... ....+. .+ ..++++|++..++++-..++.|.+.|.... .+.. +
T Consensus 131 YV~n~~~~~~~vsvid~~t~~~~~---~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~--~v~~~~~~~~~ 203 (381)
T COG3391 131 YVANAGNGNNTVSVIDAATNKVTA---TIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN--SVVRGSVGSLV 203 (381)
T ss_pred EEEecccCCceEEEEeCCCCeEEE---EEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc--ceecccccccc
Confidence 55544 6788888876532211 222222 23 789999999866666668999999997663 2221 2
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCC--CCEEEEeCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDD--GTFSIHDLRLLK 354 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~D--g~i~iwDlr~~~ 354 (358)
.. ...-..+.++|++....++-..+ +.+...|..+..
T Consensus 204 ~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 204 GV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred cc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 11 22346689999995455555444 688888887643
No 357
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.56 E-value=0.69 Score=43.60 Aligned_cols=139 Identities=12% Similarity=0.092 Sum_probs=77.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
..+.+++.+|.|..+|..+ ++.+..+........+... .+. .++.++.+|.++.+|
T Consensus 66 ~~v~v~~~~g~v~a~d~~t---------------------G~~~W~~~~~~~~~~~p~v--~~~-~v~v~~~~g~l~ald 121 (377)
T TIGR03300 66 GKVYAADADGTVVALDAET---------------------GKRLWRVDLDERLSGGVGA--DGG-LVFVGTEKGEVIALD 121 (377)
T ss_pred CEEEEECCCCeEEEEEccC---------------------CcEeeeecCCCCcccceEE--cCC-EEEEEcCCCEEEEEE
Confidence 3666777889999999766 2333222211111111111 233 788888899999999
Q ss_pred cCCCCC-cccCCCccccCCCcEEE-EEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe-----EEEEEeCC
Q 018322 259 PASDAT-WNVDPNPFIGHSASVED-LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV-----NVISWNRL 331 (358)
Q Consensus 259 ~~~~~~-~~~~~~~~~~h~~~V~~-v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V-----~~i~~~p~ 331 (358)
..++.. |. ..+. ..+.+ ... .+. .++.++.+|.|..||.+++. .+..+......+ .+....
T Consensus 122 ~~tG~~~W~---~~~~---~~~~~~p~v--~~~-~v~v~~~~g~l~a~d~~tG~-~~W~~~~~~~~~~~~~~~sp~~~-- 189 (377)
T TIGR03300 122 AEDGKELWR---AKLS---SEVLSPPLV--ANG-LVVVRTNDGRLTALDAATGE-RLWTYSRVTPALTLRGSASPVIA-- 189 (377)
T ss_pred CCCCcEeee---eccC---ceeecCCEE--ECC-EEEEECCCCeEEEEEcCCCc-eeeEEccCCCceeecCCCCCEEE--
Confidence 877432 22 1111 11111 111 133 56667789999999998864 444443222111 011111
Q ss_pred CCcEEEEEeCCCCEEEEeCCCCC
Q 018322 332 ASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 332 ~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+ ..++.+..+|.+..+|+++++
T Consensus 190 ~-~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 190 D-GGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred C-CEEEEECCCCEEEEEEccCCC
Confidence 2 356677788889989987764
No 358
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.51 E-value=0.04 Score=47.14 Aligned_cols=104 Identities=12% Similarity=-0.031 Sum_probs=59.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE-eCCCCCCeEEEEeCCCcEEEE
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID-WNPITTGRLVTGDCNSCIYLW 257 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~s~~~~~~l~sgs~dg~I~lw 257 (358)
.-+++|+.+|.|++|+...... ..-.+..-...|-++- -...+. +..+++.+|.|+.|
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~--------------------~~d~~~s~~e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~ 129 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGA--------------------HSDRVCSGEESIDLGIPNGRDSS-LGCVGAQDGRIRAC 129 (238)
T ss_pred ceEEeecccceEEEecCCccch--------------------HHHhhhcccccceeccccccccc-eeEEeccCCceeee
Confidence 5788999999999999874211 1001111111222221 122222 78889999999999
Q ss_pred ecCCCCCcccCCCccccCC-CcEEEEEECCCCCCEEEEE--ECCCcEEEEECCC
Q 018322 258 EPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASC--SVDGHIAIWDTRV 308 (358)
Q Consensus 258 d~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~--s~Dg~I~iwD~r~ 308 (358)
++.- .+.. .....|+ .++..+..+-.+. ++++. |.|..++.|++..
T Consensus 130 n~~p-~k~~---g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 130 NIKP-NKVL---GYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccc-Ccee---eeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence 9854 2211 2233355 4555555555555 56666 6667777776654
No 359
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.50 E-value=1.1 Score=39.34 Aligned_cols=125 Identities=14% Similarity=0.053 Sum_probs=74.8
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE-EcCCCCCeEEEEeCCCCCCeEEEEeCCCc
Q 018322 175 TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-FGGHKDEGYAIDWNPITTGRLVTGDCNSC 253 (358)
Q Consensus 175 p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~~l~sgs~dg~ 253 (358)
++...++..|+..+.+.--|.... +.... .-+-.-+..++- -+. +++.|...|.
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG---------------------~~~We~ilg~RiE~sa~v---vgd-fVV~GCy~g~ 74 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSG---------------------NLIWEAILGVRIECSAIV---VGD-FVVLGCYSGG 74 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCC---------------------cEEeehhhCceeeeeeEE---ECC-EEEEEEccCc
Confidence 333467788888887777776652 21111 111111222332 354 8999999999
Q ss_pred EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeC
Q 018322 254 IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR 330 (358)
Q Consensus 254 I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p 330 (358)
+++.+.+++.+. ..+..-..-=...+..+++. ++..|+.|++.+..|.++. .++...+..++...+-+.+|
T Consensus 75 lYfl~~~tGs~~----w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~-~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 75 LYFLCVKTGSQI----WNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred EEEEEecchhhe----eeeeehhhhccceEEcCCCc-eEEEecCCCcEEEeccccc-ceEEecccCCceeccceecC
Confidence 999999885331 22222111111234567787 9999999999999999983 46666554444333344555
No 360
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.30 E-value=0.25 Score=48.10 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=81.2
Q ss_pred EEecCCCceeEEEEcCCC----CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC-----
Q 018322 160 RKVAHQGCVNRIRAMTQN----PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD----- 230 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----- 230 (358)
..++.-..|..+.|.|-+ |.+||. .....|.||.+...... ..+.+.....+-.
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e----------------~~K~l~sQtcEi~e~~pv 113 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTE----------------RNKLLMSQTCEIREPFPV 113 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccc----------------cccceeeeeeeccCCccc
Confidence 345666779999999864 678887 45578999998641110 1122222111111
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
--.+.-|+|... .|++-.....-.+++++..+..+. ..+ .-.+-|.|.+|.++|+.++++.+..-.-+|||-..
T Consensus 114 LpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVk--aDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 114 LPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVK--ADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEE--Eec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 123567999987 776665444445677765444331 112 34578999999999987777777777888998654
No 361
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.22 E-value=1.9 Score=38.28 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=81.8
Q ss_pred ceeEEEEcCCCCcEEEEEeCC--CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 167 CVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.+....+++++..+.+....+ ..++++.... .....+.+ ..+..-.|++++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~----------------------~~~~~~~g--~~l~~PS~d~~g~-~ 79 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG----------------------PVRPVLTG--GSLTRPSWDPDGW-V 79 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC----------------------cceeeccC--CccccccccCCCC-E
Confidence 678889999995555554233 3455554333 22222223 2677889999975 6
Q ss_pred EEEEeCCCcEEEEe-cCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE--CCCcEEEEECCC-CCC-------ee
Q 018322 245 LVTGDCNSCIYLWE-PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWDTRV-GKS-------AL 313 (358)
Q Consensus 245 l~sgs~dg~I~lwd-~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD~r~-~~~-------~~ 313 (358)
.+....+...+++. ...+..... ......-...|.++++||+|..+.+... .++.|.+--+.. ... +.
T Consensus 80 W~v~~~~~~~~~~~~~~~g~~~~~-~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~ 158 (253)
T PF10647_consen 80 WTVDDGSGGVRVVRDSASGTGEPV-EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR 158 (253)
T ss_pred EEEEcCCCceEEEEecCCCcceeE-EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccce
Confidence 66656566666664 222211110 0111111128999999999984433332 346666664432 111 11
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDD 342 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~D 342 (358)
.........+..+.|.+++ .+++.+...
T Consensus 159 ~~~~~~~~~v~~v~W~~~~-~L~V~~~~~ 186 (253)
T PF10647_consen 159 RVAPPLLSDVTDVAWSDDS-TLVVLGRSA 186 (253)
T ss_pred EecccccCcceeeeecCCC-EEEEEeCCC
Confidence 1122335678999999999 666555443
No 362
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.16 E-value=0.072 Score=32.94 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=27.0
Q ss_pred CCeEEEEEeCCCC--cEEEEEeCCCCEEEEeCCC
Q 018322 321 ADVNVISWNRLAS--CLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 321 ~~V~~i~~~p~~~--~~lasgs~Dg~i~iwDlr~ 352 (358)
+.|.++.|+|... .+|+..-.-|.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3589999998763 5888888889999999993
No 363
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=0.13 Score=53.38 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=70.9
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
...-+.++.|+|.-+...|.+..|+.|++..+... ...+..+ .-....+|++|+|.|.
T Consensus 154 k~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~--------------------~~~v~s~-p~t~~~Tav~WSprGK- 211 (1405)
T KOG3630|consen 154 KPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL--------------------AQNVTSF-PVTNSQTAVLWSPRGK- 211 (1405)
T ss_pred cccccccccccCCccchhhhhccccchhhhhhhhh--------------------hhhhccc-CcccceeeEEeccccc-
Confidence 44566788899987777888899999999887662 1122221 2345788999999999
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP 289 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~ 289 (358)
+++.|.+.|++.-|...-.-+..+..-++. -...|.+|+|--...
T Consensus 212 Ql~iG~nnGt~vQy~P~leik~~ip~Pp~~-e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 212 QLFIGRNNGTEVQYEPSLEIKSEIPEPPVE-ENYRVLSVTWLSTQE 256 (1405)
T ss_pred eeeEecCCCeEEEeecccceeecccCCCcC-CCcceeEEEEeccee
Confidence 999999999999887643211111111111 257899999987665
No 364
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=1.7 Score=41.29 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=99.6
Q ss_pred CCeEEEEEecCCC------ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC
Q 018322 154 TPILQLRKVAHQG------CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (358)
Q Consensus 154 ~~~~~~~~~~H~~------~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (358)
...+.+..+.|+. .-|.+-|...+..++|+-| |.+.=|-+.... ..-|...-..
T Consensus 5 sGalyhelihhPslfcnipesngvFfDDaNkqlfavrS--ggatgvvvkgpn------------------dDVpiSfdm~ 64 (657)
T KOG2377|consen 5 SGALYHELIHHPSLFCNIPESNGVFFDDANKQLFAVRS--GGATGVVVKGPN------------------DDVPISFDMD 64 (657)
T ss_pred CcceEEEEecCchhhccCCcccceeeccCcceEEEEec--CCeeEEEEeCCC------------------CCCCceeeec
Confidence 5566667777763 3445555555544555533 556666665421 1233333344
Q ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
..++|.++.||+++. .||+--.+.+|.+++..............+..+..|....|+.+. -+|..+..| +-+|-+-
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST--EIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe--eEEEEecCC-eEEEEEc
Confidence 567999999999998 999999999999998744332222223344455679999998764 466666444 5666555
Q ss_pred CCCCeeEEEecCCCCeEEEEEeCCC
Q 018322 308 VGKSALTSFKAHNADVNVISWNRLA 332 (358)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~~p~~ 332 (358)
.....+..++.|+..|+=-.|++..
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEcccc
Confidence 4445566667888888888898877
No 365
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.09 E-value=0.53 Score=40.89 Aligned_cols=144 Identities=14% Similarity=0.146 Sum_probs=76.0
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 018322 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (358)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~ 259 (358)
.+.+++.++.|+.||... ++.+..+... .++...- ...+ +.++.++.++.|+.+|.
T Consensus 38 ~v~~~~~~~~l~~~d~~t---------------------G~~~W~~~~~-~~~~~~~-~~~~-~~v~v~~~~~~l~~~d~ 93 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKT---------------------GKVLWRFDLP-GPISGAP-VVDG-GRVYVGTSDGSLYALDA 93 (238)
T ss_dssp EEEEEETTSEEEEEETTT---------------------SEEEEEEECS-SCGGSGE-EEET-TEEEEEETTSEEEEEET
T ss_pred EEEEEcCCCEEEEEECCC---------------------CCEEEEeecc-cccccee-eecc-cccccccceeeeEeccc
Confidence 555668999999999876 2333333321 1111111 1122 26777777889999997
Q ss_pred CCCCC-cccCCCccccCC-CcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC----------eEEEE
Q 018322 260 ASDAT-WNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD----------VNVIS 327 (358)
Q Consensus 260 ~~~~~-~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~----------V~~i~ 327 (358)
.++.. |........... .......+. +. .++.+..++.|..+|++++ ..+......... +..-.
T Consensus 94 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 94 KTGKVLWSIYLTSSPPAGVRSSSSPAVD--GD-RLYVGTSSGKLVALDPKTG-KLLWKYPVGEPRGSSPISSFSDINGSP 169 (238)
T ss_dssp TTSCEEEEEEE-SSCTCSTB--SEEEEE--TT-EEEEEETCSEEEEEETTTT-EEEEEEESSTT-SS--EEEETTEEEEE
T ss_pred CCcceeeeeccccccccccccccCceEe--cC-EEEEEeccCcEEEEecCCC-cEEEEeecCCCCCCcceeeecccccce
Confidence 77433 110000000111 111122222 44 7888888999999999986 455555443322 11222
Q ss_pred EeCCCCcEEEEEeCCCC-EEEEeCCCCC
Q 018322 328 WNRLASCLLASGSDDGT-FSIHDLRLLK 354 (358)
Q Consensus 328 ~~p~~~~~lasgs~Dg~-i~iwDlr~~~ 354 (358)
...++ .++.++.+|. +.+ |+++++
T Consensus 170 ~~~~~--~v~~~~~~g~~~~~-d~~tg~ 194 (238)
T PF13360_consen 170 VISDG--RVYVSSGDGRVVAV-DLATGE 194 (238)
T ss_dssp ECCTT--EEEEECCTSSEEEE-ETTTTE
T ss_pred EEECC--EEEEEcCCCeEEEE-ECCCCC
Confidence 22233 5555566675 555 888775
No 366
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.02 E-value=0.19 Score=52.29 Aligned_cols=176 Identities=14% Similarity=0.120 Sum_probs=101.3
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC-CeEEEEeCCCCCC-e
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAIDWNPITTG-R 244 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~-~ 244 (358)
.-+.+..+++-. ++..++..+.+.|+-....+..-...+.. .......+...+.-|.. ++..+..++++.- .
T Consensus 43 ~sn~la~sn~ys-l~Fa~~nsk~L~vfgtknlLi~~it~D~~-----n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~ 116 (1405)
T KOG3630|consen 43 SSNNLAISNSYS-LFFAASNSKSLAVFGTKNLLIDHITSDST-----NSLVDADENLTFKVEKEIPIVIFVCFHDATDSV 116 (1405)
T ss_pred hhhhhhcccccc-eEEEecCCcceeeeccccceeeccccccc-----ccccccccccceeeeccccceEEEeccCCceEE
Confidence 345566666653 44444555666666554422111111000 00001122234444543 5556666666541 2
Q ss_pred EEEEeCCCcEEEEecCCCCCccc-CCCccccC------CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 245 LVTGDCNSCIYLWEPASDATWNV-DPNPFIGH------SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~-~~~~~~~h------~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
++..+++-.|..||+++-..... ...++..| ...+.++.|+|.-...+|.+..|+.|++.-+......+..+
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~- 195 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF- 195 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-
Confidence 33334445888999976432110 01222222 23456889999988788999999999998876533333332
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.-...+++++|+|.| ..++.|-..|++.-|-.
T Consensus 196 p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 196 PVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred CcccceeeEEecccc-ceeeEecCCCeEEEeec
Confidence 344568999999999 99999999999887753
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.83 E-value=2.8 Score=37.45 Aligned_cols=145 Identities=13% Similarity=0.115 Sum_probs=85.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
..|+.|+++| |+++++.. ...+.... +...|..|...+.-. .|++-+ |+.+++++
T Consensus 8 ~~L~vGt~~G-l~~~~~~~--------------------~~~~~~i~--~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSD--------------------PSKPTRIL--KLSSITQLSVLPELN-LLLVLS-DGQLYVYD 62 (275)
T ss_pred CEEEEEECCC-EEEEEecC--------------------CccceeEe--ecceEEEEEEecccC-EEEEEc-CCccEEEE
Confidence 5788889998 99999832 12332222 222388999988776 666555 59999999
Q ss_pred cCCCCCcccCC-----C-----ccccCCCcEEEEE--ECCCCCCEEEEEECCCcEEEEECCCCC----CeeEEEecCCCC
Q 018322 259 PASDATWNVDP-----N-----PFIGHSASVEDLQ--WSPTEPDVFASCSVDGHIAIWDTRVGK----SALTSFKAHNAD 322 (358)
Q Consensus 259 ~~~~~~~~~~~-----~-----~~~~h~~~V~~v~--~sp~~~~~las~s~Dg~I~iwD~r~~~----~~~~~~~~h~~~ 322 (358)
+.......... . ........+..++ -...+. ..+.+.....|.+|...... .....+. -...
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~ 140 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDP 140 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEEEE-cCCC
Confidence 87632211000 0 0111223444444 112333 55556666799999877631 2233332 3467
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+..++|.. ..|+.|.. ....+.|+.+..
T Consensus 141 ~~~i~~~~---~~i~v~~~-~~f~~idl~~~~ 168 (275)
T PF00780_consen 141 PSSIAFLG---NKICVGTS-KGFYLIDLNTGS 168 (275)
T ss_pred cEEEEEeC---CEEEEEeC-CceEEEecCCCC
Confidence 89999994 45666654 457788888554
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.73 E-value=4.1 Score=38.92 Aligned_cols=226 Identities=14% Similarity=0.179 Sum_probs=115.7
Q ss_pred CceeeeChhHHHhhhcccccCcce-eEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCC
Q 018322 47 GEELQCDPTAYNSLHAFHIGWPCL-SFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNK 125 (358)
Q Consensus 47 ~~~l~~~~~~Y~~~~~~~~~wP~l-s~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~ 125 (358)
.+++.+|+..+.--+. |=.+ .+.+-||+ .+++++-...+.+.-.|+|+++..
T Consensus 107 ~~evllD~n~l~~~~~----~~~~~~~~~Spdg-----------~~la~~~s~~G~e~~~l~v~Dl~t------------ 159 (414)
T PF02897_consen 107 EEEVLLDPNELAKDGG----YVSLGGFSVSPDG-----------KRLAYSLSDGGSEWYTLRVFDLET------------ 159 (414)
T ss_dssp C-EEEEEGGGGSTTSS-----EEEEEEEETTTS-----------SEEEEEEEETTSSEEEEEEEETTT------------
T ss_pred ceEEEEcchHhhccCc----eEEeeeeeECCCC-----------CEEEEEecCCCCceEEEEEEECCC------------
Confidence 3588899877554442 3333 34444664 478888887777878888887731
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCC----------CcEEEEeC
Q 018322 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADT----------GHVQVWDL 195 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~d----------g~V~iwd~ 195 (358)
...+.-. +.... -..+.|.+++..++.+.... ..|+.|.+
T Consensus 160 ----------------------------g~~l~d~-i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~ 209 (414)
T PF02897_consen 160 ----------------------------GKFLPDG-IENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL 209 (414)
T ss_dssp ----------------------------TEEEEEE-EEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred ----------------------------CcCcCCc-ccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence 1112111 11111 12289999986666665443 23788888
Q ss_pred CCCccccccccccccCCCCCCCCCCCcEEEcCCCC-C-eEEEEeCCCCCCeEEE-EeCC---CcEEEEecCCCCCcccCC
Q 018322 196 RSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-E-GYAIDWNPITTGRLVT-GDCN---SCIYLWEPASDATWNVDP 269 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~-v~~l~~s~~~~~~l~s-gs~d---g~I~lwd~~~~~~~~~~~ 269 (358)
.... ......+..... . ...+.+++++. +|+. .... ..+++.++..........
T Consensus 210 gt~~-------------------~~d~lvfe~~~~~~~~~~~~~s~d~~-~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~ 269 (414)
T PF02897_consen 210 GTPQ-------------------SEDELVFEEPDEPFWFVSVSRSKDGR-YLFISSSSGTSESEVYLLDLDDGGSPDAKP 269 (414)
T ss_dssp TS-G-------------------GG-EEEEC-TTCTTSEEEEEE-TTSS-EEEEEEESSSSEEEEEEEECCCTTTSS-SE
T ss_pred CCCh-------------------HhCeeEEeecCCCcEEEEEEecCccc-EEEEEEEccccCCeEEEEeccccCCCcCCc
Confidence 7631 121234444333 2 56888999998 5543 3333 346777776531001111
Q ss_pred CccccCCCcEE-EEEECCCCCCEEEEEEC---CCcEEEEECCCCCC--eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCC
Q 018322 270 NPFIGHSASVE-DLQWSPTEPDVFASCSV---DGHIAIWDTRVGKS--ALTSFKAHNADVNVISWNRLASCLLASGSDDG 343 (358)
Q Consensus 270 ~~~~~h~~~V~-~v~~sp~~~~~las~s~---Dg~I~iwD~r~~~~--~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg 343 (358)
..+..+...+. .+... .+. +++.... .+.|.-.++..... ....+..|...+.-..+...+..++++.-.++
T Consensus 270 ~~l~~~~~~~~~~v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 270 KLLSPREDGVEYYVDHH-GDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp EEEEESSSS-EEEEEEE-TTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred EEEeCCCCceEEEEEcc-CCE-EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence 23333333343 33333 333 4433322 45677777776432 12244556554333333334435777777666
Q ss_pred --CEEEEeCC
Q 018322 344 --TFSIHDLR 351 (358)
Q Consensus 344 --~i~iwDlr 351 (358)
.|+++++.
T Consensus 348 ~~~l~v~~~~ 357 (414)
T PF02897_consen 348 SSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETT
T ss_pred ccEEEEEECC
Confidence 68888887
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.69 E-value=1.8 Score=43.57 Aligned_cols=147 Identities=13% Similarity=0.089 Sum_probs=76.4
Q ss_pred ceeEEEEcCCCCcEEEEEe-----CCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 167 CVNRIRAMTQNPHICASWA-----DTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s-----~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.+....++|++..++++.. .+. .|.+++... .......+. ..+.-.|+|
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg----------------------~~~~lt~g~--~~t~PsWsp 406 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG----------------------VAVQVLEGH--SLTRPSWSL 406 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC----------------------cceeeecCC--CCCCceECC
Confidence 5667788898855555542 233 344444422 122223332 367889999
Q ss_pred CCCCeEEEEeCC------------CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE---E
Q 018322 240 ITTGRLVTGDCN------------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI---W 304 (358)
Q Consensus 240 ~~~~~l~sgs~d------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i---w 304 (358)
++. .|++.... +.+.+.++.. +. . .. .....|.++.|||+|. .+|... +|.|.+ -
T Consensus 407 DG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~-ge-~---~~--~~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 407 DAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDA-SA-V---AS--RVPGPISELQLSRDGV-RAAMII-GGKVYLAVVE 476 (591)
T ss_pred CCC-ceEEEecCcceEEEeccCCCceEEEEeccC-ch-h---hh--ccCCCcCeEEECCCCC-EEEEEE-CCEEEEEEEE
Confidence 976 66665422 2222223321 11 1 11 2346799999999998 444444 477766 3
Q ss_pred ECCCCCCee---EEEec-CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 305 DTRVGKSAL---TSFKA-HNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 305 D~r~~~~~~---~~~~~-h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
....+...+ ..+.. -...+..+.|..++ .++ .+..++...+|-
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~-~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGD-SLV-VGRSDPEHPVWY 523 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCC-EEE-EEecCCCCceEE
Confidence 322221111 11222 22335889999998 554 444444444443
No 370
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.69 E-value=2.9 Score=37.02 Aligned_cols=168 Identities=13% Similarity=0.113 Sum_probs=85.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.+..-.|.+...+ .++++--.++.+.++++............ ..-.+.....+...+-+|+|.+.+. .
T Consensus 64 ~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~N~G~EGla~D~~~~-~ 131 (248)
T PF06977_consen 64 FGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTTSLDRADV----------QKISLGFPNKGNKGFEGLAYDPKTN-R 131 (248)
T ss_dssp -SSEEEEEE-STT-EEEEEETTTTEEEEEEE----TT--EEEE----------EEEE---S---SS--EEEEEETTTT-E
T ss_pred CCCceeEEEECCC-EEEEEEcCCCcEEEEEEeccccccchhhc----------eEEecccccCCCcceEEEEEcCCCC-E
Confidence 5778889998766 55555445889999998553221111000 0000001112445788999999987 6
Q ss_pred EEEEeCCCcEEEEecCC--CCCcc--cCCCc---cccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-
Q 018322 245 LVTGDCNSCIYLWEPAS--DATWN--VDPNP---FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF- 316 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~--~~~~~--~~~~~---~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~- 316 (358)
|+.+-...-..||.++. ..... ..... .......+.+++++|...++++.......|..+|. .+ .++..+
T Consensus 132 L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G-~~~~~~~ 209 (248)
T PF06977_consen 132 LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QG-RVVSSLS 209 (248)
T ss_dssp EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T---EEEEEE
T ss_pred EEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CC-CEEEEEE
Confidence 66666666677777653 11100 00001 11234568899999998878888889999999994 43 343333
Q ss_pred -ec--CC-----CCeEEEEEeCCCCcEEEEEeCCCCEEEE
Q 018322 317 -KA--HN-----ADVNVISWNRLASCLLASGSDDGTFSIH 348 (358)
Q Consensus 317 -~~--h~-----~~V~~i~~~p~~~~~lasgs~Dg~i~iw 348 (358)
.. |. ..--.|+|.++| .++++. .-+.+.+|
T Consensus 210 L~~g~~gl~~~~~QpEGIa~d~~G-~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 210 LDRGFHGLSKDIPQPEGIAFDPDG-NLYIVS-EPNLFYRF 247 (248)
T ss_dssp -STTGGG-SS---SEEEEEE-TT---EEEEE-TTTEEEEE
T ss_pred eCCcccCcccccCCccEEEECCCC-CEEEEc-CCceEEEe
Confidence 22 11 246778999998 665554 44455444
No 371
>PRK13684 Ycf48-like protein; Provisional
Probab=94.63 E-value=3.3 Score=38.50 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=82.5
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEE-EeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQV-WDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
.+.++.+.+.|++ .++++ +..|.+.. ++-.. . ...++ ...-...++++.+.+.+.
T Consensus 172 ~g~~~~i~~~~~g-~~v~~-g~~G~i~~s~~~gg--~-----------------tW~~~--~~~~~~~l~~i~~~~~g~- 227 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAV-SSRGNFYSTWEPGQ--T-----------------AWTPH--QRNSSRRLQSMGFQPDGN- 227 (334)
T ss_pred cceEEEEEECCCC-eEEEE-eCCceEEEEcCCCC--C-----------------eEEEe--eCCCcccceeeeEcCCCC-
Confidence 4678888988877 45555 44565543 11111 0 01111 112335788999999886
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe---cCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK---AHN 320 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~---~h~ 320 (358)
.+++| ..|.+.+=....+..|.....+.......+.++.+.|.+. +++ ++.+|.|.. -...+. .-.... .-.
T Consensus 228 ~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~~-S~d~G~-tW~~~~~~~~~~ 302 (334)
T PRK13684 228 LWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLLV-SKDGGK-TWEKDPVGEEVP 302 (334)
T ss_pred EEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEEE-eCCCCC-CCeECCcCCCCC
Confidence 55555 4676653223333344421111111234578899999776 554 556676653 233222 111111 122
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
...+.+.|...+ ..+++| ..|.|--|+
T Consensus 303 ~~~~~~~~~~~~-~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 303 SNFYKIVFLDPE-KGFVLG-QRGVLLRYV 329 (334)
T ss_pred cceEEEEEeCCC-ceEEEC-CCceEEEec
Confidence 357778887666 566654 668887765
No 372
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.63 E-value=2.9 Score=37.56 Aligned_cols=164 Identities=14% Similarity=0.191 Sum_probs=98.8
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE--cCCCCCeEEEEeCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GGHKDEGYAIDWNPI 240 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~s~~ 240 (358)
+-...|..+.|+|+...++++......|.=.+... +.+.++ .+- ....+|.|...
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G----------------------dlirtiPL~g~-~DpE~Ieyig~ 139 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG----------------------DLIRTIPLTGF-SDPETIEYIGG 139 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCC----------------------ceEEEeccccc-CChhHeEEecC
Confidence 45566999999999977777765554443333332 333322 221 23346777776
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCccc------CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee-
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNV------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL- 313 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~- 313 (358)
+. +.++--.++.+.++.+........ ........+...+.++|.|... .|..+-.-.-+.||.+......+
T Consensus 140 n~-fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 140 NQ-FVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred CE-EEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccc
Confidence 65 555656688888887765432211 1112222266789999999988 66667777777777765432111
Q ss_pred -EEEecC-------CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 314 -TSFKAH-------NADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 314 -~~~~~h-------~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.....+ -.+|..+.|++....+|+-+..++.+.-.|+.
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 111111 23577888998766777777777766666554
No 373
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.60 E-value=0.29 Score=46.29 Aligned_cols=132 Identities=14% Similarity=0.207 Sum_probs=65.1
Q ss_pred CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC--CeEEEEeC--CCCCCeEEEEeCCCcEEEEecCCCC
Q 018322 188 GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYAIDWN--PITTGRLVTGDCNSCIYLWEPASDA 263 (358)
Q Consensus 188 g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s--~~~~~~l~sgs~dg~I~lwd~~~~~ 263 (358)
.++++||+.. .++++++.--.. ...-|.|. |....-++.+.-.++|.+|--...+
T Consensus 222 ~~l~vWD~~~---------------------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g 280 (461)
T PF05694_consen 222 HSLHVWDWST---------------------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG 280 (461)
T ss_dssp -EEEEEETTT---------------------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT
T ss_pred CeEEEEECCC---------------------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC
Confidence 5799999988 455555543221 23445554 4444234444456667766553444
Q ss_pred CcccCC------------------CccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC------
Q 018322 264 TWNVDP------------------NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH------ 319 (358)
Q Consensus 264 ~~~~~~------------------~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h------ 319 (358)
.|.... +.+..-..-|++|..|.+.+.+.+++-.+|.||.||+..+..+...-+..
T Consensus 281 ~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~ 360 (461)
T PF05694_consen 281 EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIR 360 (461)
T ss_dssp EEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT
T ss_pred CeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEec
Confidence 442110 11111245689999999999888999999999999998866554432110
Q ss_pred ------------CCCeEEEEEeCCCCcEEEEEe
Q 018322 320 ------------NADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 320 ------------~~~V~~i~~~p~~~~~lasgs 340 (358)
.+..+-|+.+.+|.++.+|.|
T Consensus 361 ~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 361 KGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -B--TTS------S----EEE-TTSSEEEEE--
T ss_pred cCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 123467889999966666665
No 374
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.49 E-value=3.2 Score=39.52 Aligned_cols=121 Identities=13% Similarity=0.171 Sum_probs=62.1
Q ss_pred CeEEEEeCCCCCCeEEEEe--------------------CCCcEEEEecCCCCCcccCCCccc-c-CCCcEEEEEE--CC
Q 018322 231 EGYAIDWNPITTGRLVTGD--------------------CNSCIYLWEPASDATWNVDPNPFI-G-HSASVEDLQW--SP 286 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs--------------------~dg~I~lwd~~~~~~~~~~~~~~~-~-h~~~V~~v~~--sp 286 (358)
-.+.+.|.|..+ .++|.. ...++++||+.+. +.. +.+. + .......|.| .|
T Consensus 182 ~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r-~~~---Q~idLg~~g~~pLEvRflH~P 256 (461)
T PF05694_consen 182 FGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR-KLL---QTIDLGEEGQMPLEVRFLHDP 256 (461)
T ss_dssp ----EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT-EEE---EEEES-TTEEEEEEEEE-SST
T ss_pred CCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC-cEe---eEEecCCCCCceEEEEecCCC
Confidence 567788888765 777763 2468999999773 222 2221 1 1234556666 56
Q ss_pred CCCCEEEEEECCCcEEEEEC-CCCCC---eeEEEecC-----------------CCCeEEEEEeCCCCcEEEEEeCCCCE
Q 018322 287 TEPDVFASCSVDGHIAIWDT-RVGKS---ALTSFKAH-----------------NADVNVISWNRLASCLLASGSDDGTF 345 (358)
Q Consensus 287 ~~~~~las~s~Dg~I~iwD~-r~~~~---~~~~~~~h-----------------~~~V~~i~~~p~~~~~lasgs~Dg~i 345 (358)
....-|+.|.-.++|..|-- ..+.. .+..+..- ..-|+.|..+-+...+.+++=..|.|
T Consensus 257 ~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdv 336 (461)
T PF05694_consen 257 DANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDV 336 (461)
T ss_dssp T--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEE
T ss_pred CccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcE
Confidence 66666777777777776644 22211 22333111 24579999999995666677789999
Q ss_pred EEEeCCCCCCC
Q 018322 346 SIHDLRLLKVR 356 (358)
Q Consensus 346 ~iwDlr~~~~~ 356 (358)
+.||+.....|
T Consensus 337 rqYDISDP~~P 347 (461)
T PF05694_consen 337 RQYDISDPFNP 347 (461)
T ss_dssp EEEE-SSTTS-
T ss_pred EEEecCCCCCC
Confidence 99999887654
No 375
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.47 E-value=1 Score=45.17 Aligned_cols=112 Identities=14% Similarity=0.305 Sum_probs=67.8
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEEC--CCCCCEEEEEECCCcEEEEECC-
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS--PTEPDVFASCSVDGHIAIWDTR- 307 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s--p~~~~~las~s~Dg~I~iwD~r- 307 (358)
...-+.-+..+. ..++-+....+.|||.+.+. .. ....| .....|.++.|. |+++ .+++.+....|.++--.
T Consensus 31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~-lE-~~~~f-~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGV-LE-YEESF-SEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLR 105 (631)
T ss_pred CcceEeecccCc-EEEEECCCCEEEEEEcCCcE-EE-Eeeee-cCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccc
Confidence 444444455443 33333445589999997632 11 11223 456789999995 6677 77778888888888532
Q ss_pred C------C-CCeeEEE--ecCC-CCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 308 V------G-KSALTSF--KAHN-ADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 308 ~------~-~~~~~~~--~~h~-~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
. + ..++..+ ..|. .+|....|.++| .+++.+| +++.|+|-
T Consensus 106 ~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 106 YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhhhcCCcccceeEEEEeecCCCCCccceeEecCC-eEEEEeC--CEEEEECC
Confidence 1 1 1133333 3444 579999999999 5544333 46888764
No 376
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.43 E-value=4.9 Score=38.52 Aligned_cols=60 Identities=17% Similarity=0.059 Sum_probs=38.4
Q ss_pred ECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 284 ~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
++.+.. ..+....++.+.+.+-.... . +. ..+++..|+.+|++ .+||.-..+|.+.|...
T Consensus 186 l~~~~~-~~i~~~~g~~i~~i~~~~~~-~---i~-~~~~i~~iavSpng-~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 186 LSSDRV-VEILLANGETIYIIDENSFK-Q---ID-SDGPIIKIAVSPNG-KFIALFTDSGNLWVVSS 245 (410)
T ss_pred eecCcc-eEEEEecCCEEEEEEccccc-c---cc-CCCCeEEEEECCCC-CEEEEEECCCCEEEEEC
Confidence 444444 45555555666644433211 1 21 23579999999999 88998888999888764
No 377
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=5.1 Score=37.95 Aligned_cols=163 Identities=10% Similarity=0.097 Sum_probs=99.0
Q ss_pred ceeEEEEcCCCCcEEEEEe--CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 167 CVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.-..+.+.|.+..+.++-. .++++.+.|-.. .........-..+ ..+++.|++. .
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t---------------------~~~~~~~~vG~~P-~~~a~~p~g~-~ 173 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT---------------------NKVTATIPVGNTP-TGVAVDPDGN-K 173 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCC---------------------CeEEEEEecCCCc-ceEEECCCCC-e
Confidence 5667888888866666655 367777777765 2333332222233 7899999998 5
Q ss_pred EEEEe-CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC--CcEEEEECCCCCCeeEE-EecCC
Q 018322 245 LVTGD-CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD--GHIAIWDTRVGKSALTS-FKAHN 320 (358)
Q Consensus 245 l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D--g~I~iwD~r~~~~~~~~-~~~h~ 320 (358)
++.+. .++.|.+.|......+.-.......-...-..+.++|++..+.++...+ +.+...|...+. .... ...-.
T Consensus 174 vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~-v~~~~~~~~~ 252 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN-VTATDLPVGS 252 (381)
T ss_pred EEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce-EEEecccccc
Confidence 55554 7889999997553221000000111223345688999998666666665 689999988743 2222 11111
Q ss_pred CCeEEEEEeCCCCcEEEEE-eCCCCEEEEeCCCCC
Q 018322 321 ADVNVISWNRLASCLLASG-SDDGTFSIHDLRLLK 354 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasg-s~Dg~i~iwDlr~~~ 354 (358)
.....+..+|.+ ..+... +..+.+.+.|.++..
T Consensus 253 ~~~~~v~~~p~g-~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 253 GAPRGVAVDPAG-KAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCCCceeECCCC-CEEEEEecCCCeEEEEeCCCCc
Confidence 134567899999 555444 445788888887643
No 378
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.88 E-value=0.2 Score=31.02 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=27.3
Q ss_pred CceeEEEEcCCCC--cEEEEEeCCCcEEEEeCCC
Q 018322 166 GCVNRIRAMTQNP--HICASWADTGHVQVWDLRS 197 (358)
Q Consensus 166 ~~V~~i~~~p~~~--~~lat~s~dg~V~iwd~~~ 197 (358)
|.|.+++|+|... .+||..-..|.|.|+|++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 6789999998663 6888888889999999985
No 379
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.79 E-value=4.9 Score=38.17 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=57.6
Q ss_pred eEEEEeCCCcEEEEecCCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
.++.++.+|.+..+|..++.. |.. .... + ....+... .+. .++.++.+|.|.+.|..++ ..+.+.......
T Consensus 296 ~vy~~~~~g~l~ald~~tG~~~W~~--~~~~-~-~~~~sp~v--~~g-~l~v~~~~G~l~~ld~~tG-~~~~~~~~~~~~ 367 (394)
T PRK11138 296 RIYLVDQNDRVYALDTRGGVELWSQ--SDLL-H-RLLTAPVL--YNG-YLVVGDSEGYLHWINREDG-RFVAQQKVDSSG 367 (394)
T ss_pred EEEEEcCCCeEEEEECCCCcEEEcc--cccC-C-CcccCCEE--ECC-EEEEEeCCCEEEEEECCCC-CEEEEEEcCCCc
Confidence 777788899999999876432 221 1111 1 01111111 133 6788899999999999986 455555433333
Q ss_pred eEE-EEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 323 VNV-ISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 323 V~~-i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+.+ ..+. + ..|+.++.||.|..+++
T Consensus 368 ~~s~P~~~--~-~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 368 FLSEPVVA--D-DKLLIQARDGTVYAITR 393 (394)
T ss_pred ceeCCEEE--C-CEEEEEeCCceEEEEeC
Confidence 322 2222 3 46777889999988764
No 380
>PHA02713 hypothetical protein; Provisional
Probab=93.73 E-value=2 Score=42.95 Aligned_cols=95 Identities=8% Similarity=0.173 Sum_probs=51.2
Q ss_pred cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC------CcEEEEECCC-CCC-eeEEEecCCCCeE
Q 018322 253 CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD------GHIAIWDTRV-GKS-ALTSFKAHNADVN 324 (358)
Q Consensus 253 ~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D------g~I~iwD~r~-~~~-~~~~~~~h~~~V~ 324 (358)
.+..||+.+ ..|.... ++.........+.+ ++. +++.|+.+ ..+..||..+ ... .+..+........
T Consensus 433 ~ve~YDP~t-d~W~~v~-~m~~~r~~~~~~~~--~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 433 KVIRYDTVN-NIWETLP-NFWTGTIRPGVVSH--KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred eEEEECCCC-CeEeecC-CCCcccccCcEEEE--CCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 477888876 5665322 12111111111222 344 77777754 2467899886 332 2222322222233
Q ss_pred EEEEeCCCCcEEEEEeCCC--CEEEEeCCCCCC
Q 018322 325 VISWNRLASCLLASGSDDG--TFSIHDLRLLKV 355 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg--~i~iwDlr~~~~ 355 (358)
.+.+ ++ .+.++||.+| .+-.||..+.+-
T Consensus 508 ~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 508 TILH--DN-TIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred eEEE--CC-EEEEEeeecceeehhhcCcccccc
Confidence 3333 45 8999999888 788888877653
No 381
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.69 E-value=2.7 Score=43.15 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=54.4
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCC--------CcccC-------CCcc-ccCCCcEEEEEECCCC--CCE
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA--------TWNVD-------PNPF-IGHSASVEDLQWSPTE--PDV 291 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~--------~~~~~-------~~~~-~~h~~~V~~v~~sp~~--~~~ 291 (358)
-+|..|..|+.|. +||..+..|.+.+.=.+..+ ...+. ...+ ..+...|..+.|+|.+ ...
T Consensus 85 f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3789999999998 77777765544433222111 11000 0111 1345678999999985 347
Q ss_pred EEEEECCCcEEEEECCCCCCeeEE
Q 018322 292 FASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 292 las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
|+.=..|+++|+||+.....+...
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEE
Confidence 888889999999999865544433
No 382
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.59 E-value=5.8 Score=39.69 Aligned_cols=78 Identities=8% Similarity=0.142 Sum_probs=52.7
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccC---C-Ccccc---CCCcEEEEEECCCCCCEEEEEECCCcEE
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD---P-NPFIG---HSASVEDLQWSPTEPDVFASCSVDGHIA 302 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~---~-~~~~~---h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (358)
...+.++++|++...++++..+.+|.+.|+.+...+... . ..+.+ -...-...+|.++|. .+.|..-|..|.
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~ 399 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIV 399 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeE
Confidence 467899999999945556667899999999764321100 0 00000 011223468999987 899999999999
Q ss_pred EEECCC
Q 018322 303 IWDTRV 308 (358)
Q Consensus 303 iwD~r~ 308 (358)
.|++..
T Consensus 400 kwn~~~ 405 (635)
T PRK02888 400 KWNIEA 405 (635)
T ss_pred EEehHH
Confidence 999865
No 383
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.59 E-value=0.51 Score=39.34 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=26.2
Q ss_pred cEEEEEECCCC-----CCEEEEEECCCcEEEEECCC
Q 018322 278 SVEDLQWSPTE-----PDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 278 ~V~~v~~sp~~-----~~~las~s~Dg~I~iwD~r~ 308 (358)
.|.+++|||.| +.+||....++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999954 45899999999999997653
No 384
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.50 E-value=0.09 Score=53.34 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=96.6
Q ss_pred ecCCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 162 VAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
.+..|.|-.++|.... +++. -.-|.+.+|++......+. ..-.+.....-...+.-+.|+|.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq--------------~~l~v~~~~p~gs~~~~V~wcp~ 191 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQ--------------PQLEVTPITPYGSDPQLVSWCPI 191 (1283)
T ss_pred hcCCCCcccccccccCChHHH---HHhhhhheeehHhhccccc--------------cceEEeecCcCCCCcceeeeccc
Confidence 4567888888885433 2222 3347789999876211110 00111112222334566778875
Q ss_pred CCC--eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEE-----------ECCCCCCEEEEEECCCcEEEEECC
Q 018322 241 TTG--RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ-----------WSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 241 ~~~--~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~-----------~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
-.+ ++..+..++.|+|..+..... ..+.+|...+.+++ .||+|. +||..+.||.++.|.+-
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeee
Confidence 322 677777888999887754222 33455766655543 689998 99999999999988764
Q ss_pred CCC----CeeEEEecCCC-CeEEEEEeCCC------C--cEEEEEeC-CCCEEEEeCCCCC
Q 018322 308 VGK----SALTSFKAHNA-DVNVISWNRLA------S--CLLASGSD-DGTFSIHDLRLLK 354 (358)
Q Consensus 308 ~~~----~~~~~~~~h~~-~V~~i~~~p~~------~--~~lasgs~-Dg~i~iwDlr~~~ 354 (358)
-.. .|++..+.|.. +-.|..|+.+. + .+++++++ +..+++|.-..++
T Consensus 266 i~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ 326 (1283)
T ss_pred eeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence 311 24455555652 22222232211 0 24555554 5579999866554
No 385
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.47 E-value=2.9 Score=39.15 Aligned_cols=104 Identities=12% Similarity=0.100 Sum_probs=60.8
Q ss_pred EEEeC-CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEE-EEECCCCCCEEEEEECCC----cEEEEECC
Q 018322 234 AIDWN-PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED-LQWSPTEPDVFASCSVDG----HIAIWDTR 307 (358)
Q Consensus 234 ~l~~s-~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~-v~~sp~~~~~las~s~Dg----~I~iwD~r 307 (358)
.+.|. +.+..+|.....+|.-+||-+...+... +.++...-.|.. +.|++.+..++.++..++ .|..-++.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~---~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP---RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE---EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccce---eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 44444 6666577777788877777665433322 234444455644 778888886777777633 44444555
Q ss_pred CCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC
Q 018322 308 VGKSALTSFKAHNADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~ 341 (358)
. ...+..+......-..++|+|++..++.+++.
T Consensus 316 ~-~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 316 S-GGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp E-TTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred C-CCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 1 23455554444333689999999666666664
No 386
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.43 E-value=5.9 Score=40.32 Aligned_cols=106 Identities=10% Similarity=0.076 Sum_probs=69.0
Q ss_pred eEEEEeCCCcEEEEecCCC------C-------CcccCCCcc--ccCCCcEEEEEEC--CCCCCEEEEEECCCcEEEEEC
Q 018322 244 RLVTGDCNSCIYLWEPASD------A-------TWNVDPNPF--IGHSASVEDLQWS--PTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~------~-------~~~~~~~~~--~~h~~~V~~v~~s--p~~~~~las~s~Dg~I~iwD~ 306 (358)
.|+.|..||.|.+|.+..- . .......++ ..-..++..++++ ...+ ++|.++....|.||-.
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LIAVSSNSQEVTVFAF 194 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EEEEecCCceEEEEEE
Confidence 7889999999999965220 0 000001111 1234678899998 6666 8999999999988865
Q ss_pred CCCCC--eeEEEecCCCCeEEEEEeCCC--Cc---EEEEEeCCCCEEEEeC
Q 018322 307 RVGKS--ALTSFKAHNADVNVISWNRLA--SC---LLASGSDDGTFSIHDL 350 (358)
Q Consensus 307 r~~~~--~~~~~~~h~~~V~~i~~~p~~--~~---~lasgs~Dg~i~iwDl 350 (358)
..... ....-..|..-|-+|+|.++. +. .|++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 44211 111112356678999997754 22 7788888999999888
No 387
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.26 E-value=12 Score=39.09 Aligned_cols=218 Identities=15% Similarity=0.186 Sum_probs=131.0
Q ss_pred eeeChhHHHhhhcccccCc-----ceeEEEEeccCCCccccCCceEEEEEeecCCC-----CCCceEEEEEeeccCCccc
Q 018322 50 LQCDPTAYNSLHAFHIGWP-----CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEK-----PSWNSIGVFKVSNISGKRR 119 (358)
Q Consensus 50 l~~~~~~Y~~~~~~~~~wP-----~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~-----~~~n~i~i~~~~~l~~~~~ 119 (358)
+++|+..+..+|.+..+-+ +.|+++.-|. ..|+++||---- +..+.|.|+.+..+
T Consensus 753 ~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~----------~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~----- 817 (1096)
T KOG1897|consen 753 RVLDQNTFEVLSSHEFERNETALSIISCKFTDDP----------NTYYVVGTGLVYPDENEPVNGRIIVFEFEEL----- 817 (1096)
T ss_pred EEecCCceeEEeeccccccceeeeeeeeeecCCC----------ceEEEEEEEeeccCCCCcccceEEEEEEecC-----
Confidence 5678888899998887744 3344455442 368999996432 34568888888410
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 018322 120 ELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHL 199 (358)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~ 199 (358)
...-......-.|.|+.+..-. | +++|. -...|+||++..
T Consensus 818 ----------------------------------~~L~~v~e~~v~Gav~aL~~fn-g-kllA~--In~~vrLye~t~-- 857 (1096)
T KOG1897|consen 818 ----------------------------------NSLELVAETVVKGAVYALVEFN-G-KLLAG--INQSVRLYEWTT-- 857 (1096)
T ss_pred ----------------------------------CceeeeeeeeeccceeehhhhC-C-eEEEe--cCcEEEEEEccc--
Confidence 1111123333468888876554 3 46664 345899999987
Q ss_pred cccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCC-CcccCCCccccCCCc
Q 018322 200 NALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA-TWNVDPNPFIGHSAS 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~-~~~~~~~~~~~h~~~ 278 (358)
.+.+..-..|..++.+|...-.+. .+++|+-=+.|.+...+... .... ..-..+...
T Consensus 858 -------------------~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~f~e--vArD~~p~W 915 (1096)
T KOG1897|consen 858 -------------------ERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGNFEE--VARDYNPNW 915 (1096)
T ss_pred -------------------cceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCceEE--eehhhCccc
Confidence 344455556778899999998888 99999988888887665422 2221 111224556
Q ss_pred EEEEEECCCCCCEEEEEECCCcEEEEECCCCC------C---eeEEE--------ecCCCCeEEE--EEeCCCCcEEEEE
Q 018322 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK------S---ALTSF--------KAHNADVNVI--SWNRLASCLLASG 339 (358)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~------~---~~~~~--------~~h~~~V~~i--~~~p~~~~~lasg 339 (358)
.+++.+-... .++-+..+|.+.+.-..+.. . .+..+ ..|..-|+++ .-.|.+ .-++-|
T Consensus 916 mtaveil~~d--~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~-~~vlfg 992 (1096)
T KOG1897|consen 916 MTAVEILDDD--TYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLE-PKVLFG 992 (1096)
T ss_pred eeeEEEecCc--eEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCC-CcEEEE
Confidence 6666654433 56666777777766443210 0 11111 2344444441 234445 346677
Q ss_pred eCCCCEEE
Q 018322 340 SDDGTFSI 347 (358)
Q Consensus 340 s~Dg~i~i 347 (358)
..+|.|-+
T Consensus 993 Tv~GsIG~ 1000 (1096)
T KOG1897|consen 993 TVNGSIGI 1000 (1096)
T ss_pred EccceEEE
Confidence 77887765
No 388
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=6.5 Score=35.41 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=101.1
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
+.++.-.+-++.++++.+- +..+..+.-++|+|+... .+|...-.-.. ..++-.|.
T Consensus 80 ~~~i~~~~l~~Dv~vse~y---vyvad~ssGL~IvDIS~P--------------------~sP~~~~~lnt-~gyaygv~ 135 (370)
T COG5276 80 LSVINARDLFADVRVSEEY---VYVADWSSGLRIVDISTP--------------------DSPTLIGFLNT-DGYAYGVY 135 (370)
T ss_pred EEEEehhhhhheeEecccE---EEEEcCCCceEEEeccCC--------------------CCcceeccccC-CceEEEEE
Confidence 4455567788888888754 333455567999999883 34433211112 25566666
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
-.|+ ++..+..+--..+.|+.++..+.. ...+......-++++.| |+ .-..+..|+-+.|-|+..+..|+..-..
T Consensus 136 vsGn-~aYVadlddgfLivdvsdpssP~l-agrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~ 210 (370)
T COG5276 136 VSGN-YAYVADLDDGFLIVDVSDPSSPQL-AGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSY 210 (370)
T ss_pred ecCC-EEEEeeccCcEEEEECCCCCCcee-eeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEE
Confidence 6776 888888666677889987655332 22333334444667766 44 4445567888999999887666544332
Q ss_pred C-CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 319 H-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 319 h-~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
. ...+.++..+++. -+++.. +.-+.+-|....+.
T Consensus 211 n~g~g~~sv~vsdnr-~y~vvy--~egvlivd~s~~ss 245 (370)
T COG5276 211 NTGPGTYSVSVSDNR-AYLVVY--DEGVLIVDVSGPSS 245 (370)
T ss_pred ecCCceEEEEecCCe-eEEEEc--ccceEEEecCCCCC
Confidence 2 3367888888765 444433 33456666665553
No 389
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.75 E-value=2.3 Score=42.67 Aligned_cols=118 Identities=14% Similarity=0.269 Sum_probs=67.5
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC--CC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP--IT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~ 241 (358)
-......++-+.-+ .+.++-+...++.|||.....- .....| ...+.|.+|+|.. ++
T Consensus 28 ~i~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~l-------------------E~~~~f-~~~~~I~dLDWtst~d~ 86 (631)
T PF12234_consen 28 GISNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVL-------------------EYEESF-SEDDPIRDLDWTSTPDG 86 (631)
T ss_pred CCCCcceEeecccC-cEEEEECCCCEEEEEEcCCcEE-------------------EEeeee-cCCCceeeceeeecCCC
Confidence 33455666666655 4444444445799999987321 111223 3456899999975 45
Q ss_pred CCeEEEEeCCCcEEEEecC-----C-CCCcccCCCc--cccCC-CcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 242 TGRLVTGDCNSCIYLWEPA-----S-DATWNVDPNP--FIGHS-ASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~-----~-~~~~~~~~~~--~~~h~-~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
. .+++.+....|.++.-. + ...|.. .+. +..|+ .+|.+..|.++|. +++ |+ +..+.|+|-.
T Consensus 87 q-siLaVGf~~~v~l~~Q~R~dy~~~~p~w~~-i~~i~i~~~T~h~Igds~Wl~~G~-LvV-~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 87 Q-SILAVGFPHHVLLYTQLRYDYTNKGPSWAP-IRKIDISSHTPHPIGDSIWLKDGT-LVV-GS-GNQLFVFDKW 156 (631)
T ss_pred C-EEEEEEcCcEEEEEEccchhhhcCCcccce-eEEEEeecCCCCCccceeEecCCe-EEE-Ee-CCEEEEECCC
Confidence 5 45555557788887531 1 112221 111 23344 5799999999996 433 33 3567777643
No 390
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.51 E-value=1.5 Score=42.28 Aligned_cols=129 Identities=11% Similarity=0.130 Sum_probs=62.3
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEE-eCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVW-DLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
.|.-..+.|.+.+ .+|+-...++|.|+ ++... ......+......+++ |.
T Consensus 68 ~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~--------------------~~k~i~~~~~~~~If~------G~- 118 (443)
T PF04053_consen 68 FGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNE--------------------VVKSIKLPFSVEKIFG------GN- 118 (443)
T ss_dssp EEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE---------------------TT-----SS-EEEEE-------SS-
T ss_pred cCceeEEEEecCc--cEEEEECCCeEEEEEcCccc--------------------cceEEcCCcccceEEc------Cc-
Confidence 3556667888854 57777778899996 44331 0001111111123333 55
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC---------CC-ee
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG---------KS-AL 313 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~---------~~-~~ 313 (358)
+|+..+ ++.|.+||..+. ..+ +.+. -.+|..|.|++++. ++|..+. ..+.|++.... -. ..
T Consensus 119 LL~~~~-~~~i~~yDw~~~-~~i---~~i~--v~~vk~V~Ws~~g~-~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f 189 (443)
T PF04053_consen 119 LLGVKS-SDFICFYDWETG-KLI---RRID--VSAVKYVIWSDDGE-LVALVTK-DSIYILKYNLEAVAAIPEEGVEDAF 189 (443)
T ss_dssp SEEEEE-TTEEEEE-TTT---EE---EEES--S-E-EEEEE-TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGE
T ss_pred EEEEEC-CCCEEEEEhhHc-cee---eEEe--cCCCcEEEEECCCC-EEEEEeC-CeEEEEEecchhcccccccCchhce
Confidence 666665 448999999873 322 2222 23489999999998 7777764 47777765431 00 22
Q ss_pred EEEecCCCCeEEEEEeCC
Q 018322 314 TSFKAHNADVNVISWNRL 331 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~ 331 (358)
..+..-...|.+..|..+
T Consensus 190 ~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 190 ELIHEISERIKSGCWVED 207 (443)
T ss_dssp EEEEEE-S--SEEEEETT
T ss_pred EEEEEecceeEEEEEEcC
Confidence 333332556777888754
No 391
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.39 E-value=7 Score=35.83 Aligned_cols=152 Identities=12% Similarity=0.029 Sum_probs=80.4
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCC
Q 018322 172 RAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCN 251 (358)
Q Consensus 172 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~d 251 (358)
.|.+....++.+--..+.|+-|+.... .. ..+... ..+.++..-..+. +|+++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g--------------------~~--~~~~~p-~~~~~~~~~d~~g-~Lv~~~-- 84 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETG--------------------KK--RVFPSP-GGFSSGALIDAGG-RLIACE-- 84 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcC--------------------ce--EEEECC-CCcccceeecCCC-eEEEEc--
Confidence 455655456666566677777777541 11 222211 2223333333332 566554
Q ss_pred CcEEEEecCCCCCcccCCCccccC-CCcEEEEEECCCCCCEEEEEE-----C-----CCcEEEEECCCCCCeeEEEecCC
Q 018322 252 SCIYLWEPASDATWNVDPNPFIGH-SASVEDLQWSPTEPDVFASCS-----V-----DGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 252 g~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~las~s-----~-----Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
..+++++...+..+........+. ....+++...|++..+|-+-+ . -|.|+.+|. . ......+..+-
T Consensus 85 ~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~-g~~~~l~~~~~ 162 (307)
T COG3386 85 HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D-GGVVRLLDDDL 162 (307)
T ss_pred cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-C-CCEEEeecCcE
Confidence 345677765433312112222222 256788999999983333333 1 133444443 2 23333344445
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
..-|.|+|+|++..++++=+..+.|.-|++.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 5568999999995555555556788888775
No 392
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.21 E-value=0.025 Score=53.55 Aligned_cols=140 Identities=18% Similarity=0.213 Sum_probs=91.4
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeC
Q 018322 171 IRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC 250 (358)
Q Consensus 171 i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~ 250 (358)
.+|-|.+.+ ++.++.+..|..||-..+ .... ..-.+....++|...+.-.++.+-.
T Consensus 40 ~~w~~e~~n-lavaca~tiv~~YD~agq----------------------~~le-~n~tg~aldm~wDkegdvlavlAek 95 (615)
T KOG2247|consen 40 HRWRPEGHN-LAVACANTIVIYYDKAGQ----------------------VILE-LNPTGKALDMAWDKEGDVLAVLAEK 95 (615)
T ss_pred eeEecCCCc-eehhhhhhHHHhhhhhcc----------------------eecc-cCCchhHhhhhhccccchhhhhhhc
Confidence 356666644 566666677888886541 1111 1223455678888877745566777
Q ss_pred CCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEe
Q 018322 251 NSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329 (358)
Q Consensus 251 dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~ 329 (358)
.+.+.+||+.+..... ..+.+ |..+. +.|++... .++.+-..|.+.|+..+..+ .+.....|...+.+++|.
T Consensus 96 ~~piylwd~n~eytqq---LE~gg~~s~sl--l~wsKg~~-el~ig~~~gn~viynhgtsR-~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 96 TGPIYLWDVNSEYTQQ---LESGGTSSKSL--LAWSKGTP-ELVIGNNAGNIVIYNHGTSR-RIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred CCCeeechhhhhhHHH---HhccCcchHHH--HhhccCCc-cccccccccceEEEeccchh-hhhhhcccccceeEEEec
Confidence 8999999997632211 11222 33333 68999888 78888899999999998854 333344488899999999
Q ss_pred CCCCcEEEEEeCCC
Q 018322 330 RLASCLLASGSDDG 343 (358)
Q Consensus 330 p~~~~~lasgs~Dg 343 (358)
+.+ +.+.++.|.
T Consensus 169 lEd--~vil~dcd~ 180 (615)
T KOG2247|consen 169 LED--YVILCDCDN 180 (615)
T ss_pred ccc--eeeecCcHH
Confidence 977 555555443
No 393
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.12 E-value=8.3 Score=39.72 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=54.7
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc---ccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN---ALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
-...|..|.++|.| .++|..|..| |.|-.+..... .+......... ........+....+...|..+.|+|.
T Consensus 83 ~~f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~C---rt~~v~~~~~~~~~~~~i~qv~WhP~ 157 (717)
T PF10168_consen 83 PLFEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINC---RTVPVDERFFTSNSSLEIKQVRWHPW 157 (717)
T ss_pred CceeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeE---EEEEechhhccCCCCceEEEEEEcCC
Confidence 44699999999999 6777777754 55555543210 01000000000 00000111111234458999999998
Q ss_pred C--CCeEEEEeCCCcEEEEecCCC
Q 018322 241 T--TGRLVTGDCNSCIYLWEPASD 262 (358)
Q Consensus 241 ~--~~~l~sgs~dg~I~lwd~~~~ 262 (358)
+ ...|+.=..|++|++||+...
T Consensus 158 s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 158 SESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCCCeEEEEecCCEEEEEecCCC
Confidence 5 238888888999999999754
No 394
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.87 E-value=10 Score=34.80 Aligned_cols=116 Identities=9% Similarity=0.077 Sum_probs=67.5
Q ss_pred EEEcCCCCCeEEEEeCCCCCCeEEEEeC-CCcEEEEecCC-CCCcccC--CCccccCCCcEEEEEECCCCCCEEEEEECC
Q 018322 223 VKFGGHKDEGYAIDWNPITTGRLVTGDC-NSCIYLWEPAS-DATWNVD--PNPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (358)
Q Consensus 223 ~~~~~h~~~v~~l~~s~~~~~~l~sgs~-dg~I~lwd~~~-~~~~~~~--~~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (358)
..+..|-.--.+|+|||+++ .|..+.. .+.|+-|++.. .+..... ...+....+..-.++...++. +.+++...
T Consensus 156 ~l~~~~~~~~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~ 233 (307)
T COG3386 156 RLLDDDLTIPNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWG 233 (307)
T ss_pred EeecCcEEecCceEECCCCC-EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccC
Confidence 33444444556899999998 6666554 57888887752 1111100 001111234444566666776 66444444
Q ss_pred C-cEEEEECCCCCCeeEEEecCCCCeEEEEEe-CCCCcEEEEEeCC
Q 018322 299 G-HIAIWDTRVGKSALTSFKAHNADVNVISWN-RLASCLLASGSDD 342 (358)
Q Consensus 299 g-~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~-p~~~~~lasgs~D 342 (358)
| .|.+|+.. + ..+..+.-....+++++|- ++...+++|+...
T Consensus 234 g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 234 GGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred CceEEEECCC-C-cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 3 89999887 3 4666665555678888885 4444666666554
No 395
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.69 E-value=2.5 Score=35.15 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=26.0
Q ss_pred CeEEEEeCCCCCC-----eEEEEeCCCcEEEEecCC
Q 018322 231 EGYAIDWNPITTG-----RLVTGDCNSCIYLWEPAS 261 (358)
Q Consensus 231 ~v~~l~~s~~~~~-----~l~sgs~dg~I~lwd~~~ 261 (358)
.+.+++|||.|-+ +||+...+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 6889999997643 789999999999998754
No 396
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.54 E-value=4.3 Score=35.82 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=67.3
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
..+++.|+..+.+.--|..++...- .... ...|++-+.- -+. +++.|...|.+++.+..++. .+..+..-..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~W---e~il--g~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~tGs-~~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIW---EAIL--GVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKTGS-QIWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEe---ehhh--CceeeeeeEE-ECC-EEEEEEccCcEEEEEecchh-heeeeeehhh
Confidence 3378888888888888887743211 1111 2334333322 344 78899999999999999964 4444433322
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
-=......+++ .+|..|+.|++++..|.++.
T Consensus 95 vk~~a~~d~~~-glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 95 VKVRAQCDFDG-GLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred hccceEEcCCC-ceEEEecCCCcEEEeccccc
Confidence 11223455667 89999999999999998865
No 397
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.52 E-value=5.5 Score=35.45 Aligned_cols=130 Identities=18% Similarity=0.316 Sum_probs=73.8
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 018322 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (358)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~ 259 (358)
+..|| ..+...+||... .+++..+.- ..++++|+ .++. .|+..+....|+.+|.
T Consensus 103 ~qLTW-k~~~~f~yd~~t---------------------l~~~~~~~y-~~EGWGLt--~dg~-~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 103 YQLTW-KEGTGFVYDPNT---------------------LKKIGTFPY-PGEGWGLT--SDGK-RLIMSDGSSRLYFLDP 156 (264)
T ss_dssp EEEES-SSSEEEEEETTT---------------------TEEEEEEE--SSS--EEE--ECSS-CEEEE-SSSEEEEE-T
T ss_pred EEEEe-cCCeEEEEcccc---------------------ceEEEEEec-CCcceEEE--cCCC-EEEEECCccceEEECC
Confidence 33443 457889999876 345555543 35899998 4455 6666666779999998
Q ss_pred CCCCCcccCCCccccC---CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe---------------cCCC
Q 018322 260 ASDATWNVDPNPFIGH---SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK---------------AHNA 321 (358)
Q Consensus 260 ~~~~~~~~~~~~~~~h---~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~---------------~h~~ 321 (358)
.+...... ...... -..++.+-|. +|. +.|=.-....|...|..++. ....+. ....
T Consensus 157 ~~f~~~~~--i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~I~~Idp~tG~-V~~~iDls~L~~~~~~~~~~~~~~d 231 (264)
T PF05096_consen 157 ETFKEVRT--IQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDRIVRIDPETGK-VVGWIDLSGLRPEVGRDKSRQPDDD 231 (264)
T ss_dssp TT-SEEEE--EE-EETTEE---EEEEEEE-TTE-EEEEETTSSEEEEEETTT-B-EEEEEE-HHHHHHHTSTTST--TTS
T ss_pred cccceEEE--EEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCe-EEEEEEhhHhhhcccccccccccCC
Confidence 76432111 011111 1345666665 444 77777777777777888753 322220 0124
Q ss_pred CeEEEEEeCCCCcEEEEEe
Q 018322 322 DVNVISWNRLASCLLASGS 340 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs 340 (358)
-.|.|+|.|....+++||=
T Consensus 232 VLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 232 VLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp -EEEEEEETTTTEEEEEET
T ss_pred eeEeEeEeCCCCEEEEEeC
Confidence 5799999998878888873
No 398
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.22 E-value=13 Score=34.91 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=54.6
Q ss_pred EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCC----CcccCCCcccc----CCCcEEEEEECCCCCCEEEEE
Q 018322 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA----TWNVDPNPFIG----HSASVEDLQWSPTEPDVFASC 295 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~----~~~~~~~~~~~----h~~~V~~v~~sp~~~~~las~ 295 (358)
.+........+|++.+.+ +++ ++.....++.+....+ ...+....+.. +......++|.|++. +.++.
T Consensus 66 vfa~~l~~p~Gi~~~~~G--lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~ 141 (367)
T TIGR02604 66 VFAEELSMVTGLAVAVGG--VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNH 141 (367)
T ss_pred EeecCCCCccceeEecCC--EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEec
Confidence 333333456788888765 444 3434333344543221 11111111211 234577899999997 55544
Q ss_pred ECC-------------------CcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEe
Q 018322 296 SVD-------------------GHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 296 s~D-------------------g~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs 340 (358)
+.. |.|.-++...+ .+..+...-...+.++|++.+ .++++-.
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~--~~e~~a~G~rnp~Gl~~d~~G-~l~~tdn 202 (367)
T TIGR02604 142 GNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG--KLRVVAHGFQNPYGHSVDSWG-DVFFCDN 202 (367)
T ss_pred ccCCCceeccCCCccCcccccCceEEEEecCCC--eEEEEecCcCCCccceECCCC-CEEEEcc
Confidence 421 33444444432 222221112235788999988 7776644
No 399
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.95 E-value=4.7 Score=38.99 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=72.8
Q ss_pred CCCcEEEcCCCCCeEEEEeCCCCCC------eEEEEeCCCcEEEEecCCCCCcccC--CCccccCCCcEEEEEECCCCCC
Q 018322 219 QSPLVKFGGHKDEGYAIDWNPITTG------RLVTGDCNSCIYLWEPASDATWNVD--PNPFIGHSASVEDLQWSPTEPD 290 (358)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~s~~~~~------~l~sgs~dg~I~lwd~~~~~~~~~~--~~~~~~h~~~V~~v~~sp~~~~ 290 (358)
++.+-...-|..- -+.+.|.... .-++|-.+..|.-.|.+..+..+.. .+.+.+ .....+..-..+|
T Consensus 500 GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t-Kn~Fss~~tTesG-- 574 (776)
T COG5167 500 GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT-KNKFSSGMTTESG-- 574 (776)
T ss_pred ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc-cccccccccccCc--
Confidence 3444445444433 4666765321 3345555777777788765532211 111111 1223333322233
Q ss_pred EEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 291 VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
++|.+|..|-||+||.-. ...-..+.+-+..|-.|....+|..+||||- ..+.+-|++
T Consensus 575 yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 575 YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP 632 (776)
T ss_pred eEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence 899999999999999543 2333345667778999999999966677663 467777775
No 400
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.89 E-value=3.3 Score=37.03 Aligned_cols=100 Identities=17% Similarity=0.278 Sum_probs=64.9
Q ss_pred EEEEeCCCCCCeEEEEeCCC-cEEEEecCCCCCccc----CCCccccCCCcEEEEEECCCCCCEEEEEE----CCCcEEE
Q 018322 233 YAIDWNPITTGRLVTGDCNS-CIYLWEPASDATWNV----DPNPFIGHSASVEDLQWSPTEPDVFASCS----VDGHIAI 303 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg-~I~lwd~~~~~~~~~----~~~~~~~h~~~V~~v~~sp~~~~~las~s----~Dg~I~i 303 (358)
..+.++|....-++.+-.=| ...++|......... ..+.|.+|. +|||++..+.||=. .-|.|-|
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEE
Confidence 35666666553344444434 345677765433221 124466675 79999994444432 2378999
Q ss_pred EECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEE
Q 018322 304 WDTRVGKSALTSFKAHNADVNVISWNRLASCLLASG 339 (358)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasg 339 (358)
||.|.+-+.+-.+..|.-.-..+.|.++| ++|+.+
T Consensus 145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DG-rtlvva 179 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGPHEVTLMADG-RTLVVA 179 (366)
T ss_pred EecccccceecccccCCcCcceeEEecCC-cEEEEe
Confidence 99998666777788888888999999999 666654
No 401
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.65 E-value=1.7 Score=41.31 Aligned_cols=102 Identities=12% Similarity=0.103 Sum_probs=68.8
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-.|+|.+|+|++++ .++|.--.+.+|.++++...... .......+..+..|.+..|+...
T Consensus 65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~-----------------l~~~~~ck~k~~~IlGF~W~~s~-- 124 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQ-----------------LEYTQECKTKNANILGFCWTSST-- 124 (657)
T ss_pred CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchh-----------------hHHHHHhccCcceeEEEEEecCe--
Confidence 36799999999999 89999999999999998652110 11111222233468999999874
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP 289 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~ 289 (358)
-+|.-.. .-|-+|.+...... .+....|+..|+-..|++..+
T Consensus 125 e~A~i~~-~G~e~y~v~pekrs---lRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 125 EIAFITD-QGIEFYQVLPEKRS---LRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred eEEEEec-CCeEEEEEchhhhh---hhhhhhcccCccEEEEccccc
Confidence 4555553 34667766443222 255667888888888988876
No 402
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=90.27 E-value=11 Score=35.88 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=57.4
Q ss_pred eEEEEeCCCcEEEEecCCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC-CC
Q 018322 244 RLVTGDCNSCIYLWEPASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-NA 321 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-~~ 321 (358)
.++.++.+|.+..+|+.++.. |. ..+. ....+.. .+. .++.++.+|.+..+|..++. .+.....- ..
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~~W~---~~~~----~~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~~ 326 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQIVWK---REYG----SVNDFAV--DGG-RIYLVDQNDRVYALDTRGGV-ELWSQSDLLHR 326 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCEEEe---ecCC----CccCcEE--ECC-EEEEEcCCCeEEEEECCCCc-EEEcccccCCC
Confidence 677777889999999987432 22 1111 1111222 233 56677889999999998863 33322111 11
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
...+.... + ..|+.++.+|.|.+.|..+++
T Consensus 327 ~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 327 LLTAPVLY--N-GYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred cccCCEEE--C-CEEEEEeCCCEEEEEECCCCC
Confidence 12222222 3 467778889999999988765
No 403
>PRK10115 protease 2; Provisional
Probab=89.97 E-value=26 Score=36.15 Aligned_cols=52 Identities=10% Similarity=-0.021 Sum_probs=36.4
Q ss_pred CCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEe
Q 018322 46 EGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKV 111 (358)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~ 111 (358)
..|++.+|+.++.--+. .|-.-.+.|-||+ .+|+++..+.+.+...|+|.++
T Consensus 109 ~~~~~llD~n~~a~~~~---~~~l~~~~~Spdg-----------~~la~~~d~~G~E~~~l~v~d~ 160 (686)
T PRK10115 109 DEWETLLDANKRAAHSE---FYTLGGMAITPDN-----------TIMALAEDFLSRRQYGIRFRNL 160 (686)
T ss_pred CCCEEEEcchhhccCCC---cEEEeEEEECCCC-----------CEEEEEecCCCcEEEEEEEEEC
Confidence 34789999988743222 1333356777775 4888888888888888988887
No 404
>PRK13616 lipoprotein LpqB; Provisional
Probab=89.41 E-value=6.2 Score=39.71 Aligned_cols=105 Identities=9% Similarity=0.020 Sum_probs=56.0
Q ss_pred CCeEEEEeCCCCCCeEEEEe------CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-CcEE
Q 018322 230 DEGYAIDWNPITTGRLVTGD------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIA 302 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~ 302 (358)
..+.+.+.+|++. .++..- .|..-.||-...++... ....+ .....-.|+|++. .+++.+.. ..++
T Consensus 350 ~~vsspaiSpdG~-~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~---~lt~g--~~~t~PsWspDG~-~lw~v~dg~~~~~ 422 (591)
T PRK13616 350 GNITSAALSRSGR-QVAAVVTLGRGAPDPASSLWVGPLGGVAV---QVLEG--HSLTRPSWSLDAD-AVWVVVDGNTVVR 422 (591)
T ss_pred cCcccceECCCCC-EEEEEEeecCCCCCcceEEEEEeCCCcce---eeecC--CCCCCceECCCCC-ceEEEecCcceEE
Confidence 3567889999998 554433 24444455433222211 11222 2377789999987 55555432 2222
Q ss_pred EE-----------ECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEE
Q 018322 303 IW-----------DTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSI 347 (358)
Q Consensus 303 iw-----------D~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~i 347 (358)
+. ++..+. ... .....|..+.|+|+| ..||.-. +|+|.+
T Consensus 423 v~~~~~~gql~~~~vd~ge-~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v~V 472 (591)
T PRK13616 423 VIRDPATGQLARTPVDASA-VAS---RVPGPISELQLSRDG-VRAAMII-GGKVYL 472 (591)
T ss_pred EeccCCCceEEEEeccCch-hhh---ccCCCcCeEEECCCC-CEEEEEE-CCEEEE
Confidence 22 332211 111 234579999999999 4444433 366665
No 405
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.31 E-value=0.68 Score=47.35 Aligned_cols=88 Identities=9% Similarity=0.096 Sum_probs=55.0
Q ss_pred CCeEEEEEec-CCCceeEEEEcCCC--CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC
Q 018322 154 TPILQLRKVA-HQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD 230 (358)
Q Consensus 154 ~~~~~~~~~~-H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 230 (358)
.+.+..+.+. ....+..|.|+|-- ...+..+-.++.|++..++..... .+.+|..
T Consensus 168 q~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~----------------------l~rsHs~ 225 (1283)
T KOG1916|consen 168 QPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS----------------------LFRSHSQ 225 (1283)
T ss_pred ccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHH----------------------HHHhcCC
Confidence 4555544333 33466778888743 256677778889998887763321 1223333
Q ss_pred CeEEEE-----------eCCCCCCeEEEEeCCCcEEEEecCCCCC
Q 018322 231 EGYAID-----------WNPITTGRLVTGDCNSCIYLWEPASDAT 264 (358)
Q Consensus 231 ~v~~l~-----------~s~~~~~~l~sgs~dg~I~lwd~~~~~~ 264 (358)
.+..++ .+|+|. .|+.++.||.++.|.+.-.++
T Consensus 226 ~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 226 RVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred CcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeecc
Confidence 322222 588998 999999999999998754343
No 406
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.14 E-value=6.6 Score=42.17 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=50.8
Q ss_pred CCCcEEEEEECCCCCCEEEEEECCCcEEEEECC----CC-------CC------------eeEEEe-cCCCCeEEEEEeC
Q 018322 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR----VG-------KS------------ALTSFK-AHNADVNVISWNR 330 (358)
Q Consensus 275 h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r----~~-------~~------------~~~~~~-~h~~~V~~i~~~p 330 (358)
....|+++....+|+ +|++|-++ .||.+- .+ +- .+..+. .+..+|..|....
T Consensus 177 dg~~V~~I~~t~nGR-IF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGR-IFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred CCceEEEEEeccCCc-EEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 356789999888888 77666554 445431 10 00 112233 5677899999987
Q ss_pred CCCcEEEEEeCCCCEEEEeCCC
Q 018322 331 LASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 331 ~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.. .++.+-+..|+|.+||+..
T Consensus 253 SR-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SR-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cc-ceeeeeccCceEEEEEccC
Confidence 66 7899999999999999976
No 407
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.91 E-value=8.1 Score=37.58 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=50.2
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCC--------CcccCC-------CccccC-CCcEEEEEECCCC--CCEE
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA--------TWNVDP-------NPFIGH-SASVEDLQWSPTE--PDVF 292 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~--------~~~~~~-------~~~~~h-~~~V~~v~~sp~~--~~~l 292 (358)
+|+.+..++.|. .++-.+.+|.+.++=.+..| +..+.. ..|... .-.+..++|+|+. ...+
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 788899999998 66666668876655432211 111111 111111 1245678999987 5578
Q ss_pred EEEECCCcEEEEECCCC
Q 018322 293 ASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 293 as~s~Dg~I~iwD~r~~ 309 (358)
..-+.|..|||||+...
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 88889999999998753
No 408
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.99 E-value=21 Score=31.60 Aligned_cols=110 Identities=9% Similarity=0.120 Sum_probs=63.4
Q ss_pred CeEEEEeCCCCCCeEEEEe---CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE-C
Q 018322 231 EGYAIDWNPITTGRLVTGD---CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD-T 306 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs---~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD-~ 306 (358)
.+.+.++++++. .+|... ....++++.. .+... .... ...+..-+|++++. +.+....+...+++- .
T Consensus 25 ~~~s~AvS~dg~-~~A~v~~~~~~~~L~~~~~--~~~~~---~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGS-RVAAVSEGDGGRSLYVGPA--GGPVR---PVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCC-eEEEEEEcCCCCEEEEEcC--CCcce---eecc--CCccccccccCCCC-EEEEEcCCCceEEEEec
Confidence 678999999997 555443 3334444443 23221 1112 23677789999976 776666677777773 3
Q ss_pred CCCCCeeEEEecC--CCCeEEEEEeCCCCcEEEEE--eCCCCEEEEe
Q 018322 307 RVGKSALTSFKAH--NADVNVISWNRLASCLLASG--SDDGTFSIHD 349 (358)
Q Consensus 307 r~~~~~~~~~~~h--~~~V~~i~~~p~~~~~lasg--s~Dg~i~iwD 349 (358)
..+......+... ...|..+.++|+|.++.+.. ..++.|.|=-
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~ 142 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG 142 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE
Confidence 3322222223222 12799999999995444333 2345666543
No 409
>PHA03098 kelch-like protein; Provisional
Probab=86.98 E-value=30 Score=34.29 Aligned_cols=103 Identities=9% Similarity=0.116 Sum_probs=50.5
Q ss_pred eEEEEeCC------CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC--------cEEEEECCCC
Q 018322 244 RLVTGDCN------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--------HIAIWDTRVG 309 (358)
Q Consensus 244 ~l~sgs~d------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--------~I~iwD~r~~ 309 (358)
+++.|+.. ..+..||+.+ ..|.... ...........+. .++. +++.|+..+ .+.+||+.+.
T Consensus 392 iYv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~-~~p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 392 IYVIGGISKNDELLKTVECFSLNT-NKWSKGS-PLPISHYGGCAIY--HDGK-IYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred EEEECCcCCCCcccceEEEEeCCC-CeeeecC-CCCccccCceEEE--ECCE-EEEECCccCCCCCcccceEEEecCCCC
Confidence 55666532 4578899876 5554321 1111111111122 2344 777776532 3888998874
Q ss_pred CCeeE-EEecCCCCeEEEEEeCCCCcEEEEEeCC-----CCEEEEeCCCCC
Q 018322 310 KSALT-SFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLK 354 (358)
Q Consensus 310 ~~~~~-~~~~h~~~V~~i~~~p~~~~~lasgs~D-----g~i~iwDlr~~~ 354 (358)
..... ...........+.+ ++ .+++.||.+ ..|.+||..+.+
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCE
Confidence 32111 11111111122222 45 777788754 468888887643
No 410
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.95 E-value=4 Score=35.41 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=44.8
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCCCeeEE------Ee-------cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTS------FK-------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~~~~~~------~~-------~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
..+. ++++.+.+|.+++||+...+..+.. +. .....|..+..+.+| .-|++-+ +|..+.|+...
T Consensus 20 ~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 20 CNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred eCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecccc
Confidence 4455 7999999999999999985321111 11 355678889999888 5566554 57888888653
No 411
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.83 E-value=0.13 Score=48.84 Aligned_cols=107 Identities=17% Similarity=0.303 Sum_probs=76.6
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC-CCCCeEEEEeCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNPIT 241 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~ 241 (358)
..++..-.++|..+++.+++.+-..+.+.|||+++.. .....+.+ |..+. +.|++..
T Consensus 72 n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey--------------------tqqLE~gg~~s~sl--l~wsKg~ 129 (615)
T KOG2247|consen 72 NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY--------------------TQQLESGGTSSKSL--LAWSKGT 129 (615)
T ss_pred CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh--------------------HHHHhccCcchHHH--HhhccCC
Confidence 3467777788888887777777788999999998731 11111222 33333 7899988
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEEEECCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg 299 (358)
. .++.|-..|.+.|++...... ....| |...+.+++|.+.+ ..+.|+.|.
T Consensus 130 ~-el~ig~~~gn~viynhgtsR~-----iiv~Gkh~RRgtq~av~lEd--~vil~dcd~ 180 (615)
T KOG2247|consen 130 P-ELVIGNNAGNIVIYNHGTSRR-----IIVMGKHQRRGTQIAVTLED--YVILCDCDN 180 (615)
T ss_pred c-cccccccccceEEEeccchhh-----hhhhcccccceeEEEecccc--eeeecCcHH
Confidence 8 899999999999999876433 23445 89999999999876 466666654
No 412
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.33 E-value=8.1 Score=37.56 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=49.1
Q ss_pred CCcEEEEEECCCCCCEEEEEECCCcEEEEECCC-CC-------CeeEEE---------e--cCCCCeEEEEEeCCC--Cc
Q 018322 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV-GK-------SALTSF---------K--AHNADVNVISWNRLA--SC 334 (358)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~-~~-------~~~~~~---------~--~h~~~V~~i~~~p~~--~~ 334 (358)
.-.|..|..++.|. .++-.+-+|.+.++=.|. ++ +++... . ...-.+..++|+|+. ..
T Consensus 103 ~feV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred eEEEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence 34677888999998 666666677665543211 11 111111 1 111245678999986 45
Q ss_pred EEEEEeCCCCEEEEeCCCCC
Q 018322 335 LLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 335 ~lasgs~Dg~i~iwDlr~~~ 354 (358)
.|..-+.|..|+|||+....
T Consensus 182 hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred eEEEEecCcEEEEEecCCcc
Confidence 66667789999999998754
No 413
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=85.80 E-value=11 Score=33.42 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=40.6
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
.|+.|..+| ++++++.....+. ...+...|..+...|.-+ +++.-+ |+.++++++...
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~-----~i~~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l 66 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPT-----RILKLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSL 66 (275)
T ss_pred EEEEEECCC-EEEEEecCCccce-----eEeecceEEEEEEecccC-EEEEEc-CCccEEEEchhh
Confidence 899998888 8999983323222 112334499999998877 555554 499999998763
No 414
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.78 E-value=12 Score=33.85 Aligned_cols=95 Identities=19% Similarity=0.348 Sum_probs=60.5
Q ss_pred cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE------CCCcEEEEECCCCCCeeEEEec-----CCC
Q 018322 253 CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS------VDGHIAIWDTRVGKSALTSFKA-----HNA 321 (358)
Q Consensus 253 ~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s------~Dg~I~iwD~r~~~~~~~~~~~-----h~~ 321 (358)
.||+||+.+ .+|. ..-.+-.+.|++++|..+.. +++.|. ....+..||.... ....+.. -.+
T Consensus 17 ~lC~yd~~~-~qW~---~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~--~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 17 GLCLYDTDN-SQWS---SPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQ--TWSSLGGGSSNSIPG 89 (281)
T ss_pred EEEEEECCC-CEee---cCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCC--eeeecCCcccccCCC
Confidence 689999876 6776 33334567899999986555 777775 4567889998763 2223332 236
Q ss_pred CeEEEEEeC-CCCcEEEEEe-CCC--CEEEEeCCCCC
Q 018322 322 DVNVISWNR-LASCLLASGS-DDG--TFSIHDLRLLK 354 (358)
Q Consensus 322 ~V~~i~~~p-~~~~~lasgs-~Dg--~i~iwDlr~~~ 354 (358)
+|+.+.+.. +...+.+.|. .+| .|..||=.++.
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 788887743 3334555554 333 57777765543
No 415
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=85.61 E-value=52 Score=34.74 Aligned_cols=99 Identities=10% Similarity=0.061 Sum_probs=64.7
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE--ecCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--KAHNA 321 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--~~h~~ 321 (358)
++++|- ...|+||+..+... .+.-..|...+..+...-.+. .++.|.-=++|.+.-.+........+ ..+..
T Consensus 841 kllA~I-n~~vrLye~t~~~e----Lr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~f~evArD~~p~ 914 (1096)
T KOG1897|consen 841 KLLAGI-NQSVRLYEWTTERE----LRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGNFEEVARDYNPN 914 (1096)
T ss_pred eEEEec-CcEEEEEEccccce----ehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCceEEeehhhCcc
Confidence 666554 67999999977423 234445667777788777777 88889888888887776543223333 45777
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+++++.+-.+. .++-+..+|.+.+--.
T Consensus 915 Wmtaveil~~d--~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 915 WMTAVEILDDD--TYLGAENSGNLFTVRK 941 (1096)
T ss_pred ceeeEEEecCc--eEEeecccccEEEEEe
Confidence 88888877655 3344445666665433
No 416
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.97 E-value=29 Score=31.29 Aligned_cols=106 Identities=13% Similarity=0.109 Sum_probs=70.0
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCc-EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGH-VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~-V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
......|.++|..+.-++.+-.-|+ ..+||.+........ ....-..|.||. .|||+|.
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~-------------~s~~~RHfyGHG------vfs~dG~- 126 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL-------------VSQEGRHFYGHG------VFSPDGR- 126 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE-------------ecccCceeeccc------ccCCCCc-
Confidence 4445578889988777888777776 568888762110000 012223455654 4899998
Q ss_pred eEEEEeC-----CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEE
Q 018322 244 RLVTGDC-----NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (358)
Q Consensus 244 ~l~sgs~-----dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (358)
+|...-+ -|.|-|||.+..-.. ...+..|.-.-..+.|.++++ .++.
T Consensus 127 ~LYATEndfd~~rGViGvYd~r~~fqr---vgE~~t~GiGpHev~lm~DGr-tlvv 178 (366)
T COG3490 127 LLYATENDFDPNRGVIGVYDAREGFQR---VGEFSTHGIGPHEVTLMADGR-TLVV 178 (366)
T ss_pred EEEeecCCCCCCCceEEEEecccccce---ecccccCCcCcceeEEecCCc-EEEE
Confidence 7766543 378999999863222 356778888888999999999 4443
No 417
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.24 E-value=31 Score=33.67 Aligned_cols=62 Identities=11% Similarity=0.310 Sum_probs=46.7
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
..|++|+|+..|-|+|||--.. . . ...+.+-...|-.|..+.+|..+||+|- ..+.+-|++-
T Consensus 572 esGyIa~as~kGDirLyDRig~-r-A--KtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGK-R-A--KTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcc-h-h--hhcCcccccceeeeEeecCCcEEEEeec--ceEEEEeccc
Confidence 3469999999999999995321 1 1 2456667788999999999997777775 5788888763
No 418
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=84.21 E-value=8.2 Score=35.65 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=36.5
Q ss_pred cEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEE-eCCCCEEEEeCCCCCC
Q 018322 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASG-SDDGTFSIHDLRLLKV 355 (358)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasg-s~Dg~i~iwDlr~~~~ 355 (358)
.|-++|+.+. +.+.++.. ...+.+|+.+.+...+|++. ..++.|.+||..+++.
T Consensus 270 eVWv~D~~t~-krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 270 EVWVYDLKTH-KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEEEETTTT-EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EEEEEECCCC-eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 3667788874 45666542 23578999999886677654 4578999999998863
No 419
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=83.74 E-value=51 Score=33.14 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=53.6
Q ss_pred eEEEEeCCC-----cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC------cEEEEECCCCCC-
Q 018322 244 RLVTGDCNS-----CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG------HIAIWDTRVGKS- 311 (358)
Q Consensus 244 ~l~sgs~dg-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg------~I~iwD~r~~~~- 311 (358)
+.|+|+.|| +|-.||..+ ..|.... +.......+..+.+ .+. +.++||.++ ++..||..+...
T Consensus 383 iYavGG~dg~~~l~svE~YDp~~-~~W~~va-~m~~~r~~~gv~~~--~g~-iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 383 LYAVGGFDGEKSLNSVECYDPVT-NKWTPVA-PMLTRRSGHGVAVL--GGK-LYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred EEEEeccccccccccEEEecCCC-CcccccC-CCCcceeeeEEEEE--CCE-EEEEcCcCCCccccceEEEEcCCCCcee
Confidence 677787775 466788766 5554211 11111122222222 345 888888554 567888887432
Q ss_pred ---eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCC-----EEEEeCCCCC
Q 018322 312 ---ALTSFKAHNADVNVISWNRLASCLLASGSDDGT-----FSIHDLRLLK 354 (358)
Q Consensus 312 ---~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~-----i~iwDlr~~~ 354 (358)
++.+-+.+. ....+ ++ .+++.||.|+. |..+|.++.+
T Consensus 458 ~~~~M~~~R~~~---g~a~~--~~-~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 458 LIAPMNTRRSGF---GVAVL--NG-KIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ecCCcccccccc---eEEEE--CC-EEEEECCccCCCccceEEEEcCCCCc
Confidence 222222111 12222 34 78888888763 6668777644
No 420
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=83.44 E-value=26 Score=33.58 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=53.8
Q ss_pred EEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCc-EEEEEECCC--------------
Q 018322 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS-VEDLQWSPT-------------- 287 (358)
Q Consensus 223 ~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~-V~~v~~sp~-------------- 287 (358)
..+......+.+|..+|.+. +.|+.+.=|.|.|+|+..... .+.++|..+. +.=+.....
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~v----vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVARGIV----VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred EeeccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCCChh----hhhhccCccceEEEEEeecccccccccccccCCC
Confidence 34555666899999999987 888888889999999977422 1334443221 111111000
Q ss_pred ---CCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 288 ---EPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 288 ---~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
...+++-...-|.|-||.++.+. .+..+
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~-Rv~a~ 406 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGP-RVAAF 406 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCC-EEEEE
Confidence 11134445667889999998853 44444
No 421
>PRK10115 protease 2; Provisional
Probab=83.13 E-value=60 Score=33.48 Aligned_cols=116 Identities=7% Similarity=0.018 Sum_probs=60.5
Q ss_pred CceeEEEEcCCCCcEEEEEeCCC----cEEEEeCCCCccccccccccccCCCCCCCCCCCcE-EEcCCCCCeEEEEeCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADTG----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~ 240 (358)
-.+..+.++|++..++.+...+| .|++.|+.. +..+. .+.+ . . ..++|.++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t---------------------g~~l~~~i~~-~-~-~~~~w~~D 182 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET---------------------GNWYPELLDN-V-E-PSFVWAND 182 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC---------------------CCCCCccccC-c-c-eEEEEeeC
Confidence 45667889999843444433333 477878764 12111 1111 1 1 46999999
Q ss_pred CCCeEEEEeCC-----CcEEEEecCCCCCcccCCCccccCCCcEE-EEEECCCCCCEEEEEEC--CCcEEEEECC
Q 018322 241 TTGRLVTGDCN-----SCIYLWEPASDATWNVDPNPFIGHSASVE-DLQWSPTEPDVFASCSV--DGHIAIWDTR 307 (358)
Q Consensus 241 ~~~~l~sgs~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~las~s~--Dg~I~iwD~r 307 (358)
+.+++++...+ ..|+++++.++.... ...+........ .+..+.++..+++.+.. ++.+.+++..
T Consensus 183 ~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d--~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 183 SWTFYYVRKHPVTLLPYQVWRHTIGTPASQD--ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCEEEEEEecCCCCCCCEEEEEECCCChhHC--eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 88555554422 367777876642111 112222222222 33334466645544443 4678888854
No 422
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=83.01 E-value=45 Score=32.00 Aligned_cols=155 Identities=11% Similarity=0.067 Sum_probs=81.9
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC----CCCeEEEEeC
Q 018322 175 TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI----TTGRLVTGDC 250 (358)
Q Consensus 175 p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~~l~sgs~ 250 (358)
+++...|++||..|.++||+....... ...+..-..-..+|..|..-.. ....||+ =.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~-----------------~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-Lh 95 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQ-----------------PEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LH 95 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCC-----------------CccEEEEEecCCcEEEEEeccccCCCCcceEEE-ec
Confidence 344468999999999999998542110 1112212223457777776432 1113444 33
Q ss_pred CCcEEEEecCCCCCcc-----cCCCccccCC--CcEEEEEECC----CCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 251 NSCIYLWEPASDATWN-----VDPNPFIGHS--ASVEDLQWSP----TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 251 dg~I~lwd~~~~~~~~-----~~~~~~~~h~--~~V~~v~~sp----~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
-..+.+|.+....... ........|. .....+++-| .++.+++.-+.||.+.+|+-+.- ....+-..
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--~f~~~lp~ 173 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--AFSRFLPD 173 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--EEEEEcCC
Confidence 5677777773321110 0011112222 1222233322 22458999999999999987651 11122111
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
---.-.+.+.+.. ..|++++.+..|..|..
T Consensus 174 ~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 174 FLLPGPLCYCPRT-DSFVTASSSWTLECYKY 203 (418)
T ss_pred CCCCcCeEEeecC-CEEEEecCceeEEEecH
Confidence 1112335777766 67777777777777654
No 423
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=82.93 E-value=38 Score=36.47 Aligned_cols=161 Identities=13% Similarity=0.126 Sum_probs=91.1
Q ss_pred eEEEEEeecCCC----CCCceEEEEEeecc-CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEec
Q 018322 89 TAYFVAGTQAEK----PSWNSIGVFKVSNI-SGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVA 163 (358)
Q Consensus 89 ~~~~v~GT~~~~----~~~n~i~i~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (358)
.-|+++||.-.. +..+.++|+++-.+ |.+.. + . .+....++....
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk-P----------------------------~-t~~KlKel~~eE 1095 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK-P----------------------------F-TKNKLKELYIEE 1095 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCC-C----------------------------c-ccceeeeeehhh
Confidence 368999997543 34678999988321 11100 0 0 012222344455
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
..|+|.+++-.. | .|+++.. .+|.||++.... ...++. | -.-+++..+.....+
T Consensus 1096 ~KGtVsavceV~-G--~l~~~~G-qKI~v~~l~r~~------------------~ligVa-F--iD~~~yv~s~~~vkn- 1149 (1366)
T KOG1896|consen 1096 QKGTVSAVCEVR-G--HLLSSQG-QKIIVRKLDRDS------------------ELIGVA-F--IDLPLYVHSMKVVKN- 1149 (1366)
T ss_pred cccceEEEEEec-c--EEEEccC-cEEEEEEeccCC------------------cceeeE-E--eccceeEEehhhhhh-
Confidence 779999887554 4 4555333 479999995411 112222 1 122555555555565
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCC-EEEEEECCCcEEEEEC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD-VFASCSVDGHIAIWDT 306 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~las~s~Dg~I~iwD~ 306 (358)
+|+.|+--..|.+.-......... ...-.-..-.+.++.|--+|.+ .|+.+..++.|++|-.
T Consensus 1150 lIl~gDV~ksisfl~fqeep~rls-L~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1150 LILAGDVMKSISFLGFQEEPYRLS-LLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred heehhhhhhceEEEEEccCceEEE-EeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence 888888888888877655322110 0000112345777777766654 4778888999999854
No 424
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=82.70 E-value=41 Score=31.78 Aligned_cols=156 Identities=12% Similarity=0.159 Sum_probs=71.1
Q ss_pred CCceeEEEEcCCCCcEEEEEeCC---C-cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC--CCeEEEEeC
Q 018322 165 QGCVNRIRAMTQNPHICASWADT---G-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK--DEGYAIDWN 238 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~d---g-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~s 238 (358)
...+.-+.|+|..|.+|+-|-+- . .-|||-++... .....+..|. ..+..=-|.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg--------------------~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG--------------------SNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------------------EESS---TTEEEEEEEE-
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC--------------------CcceeeecCCCCccccccccc
Confidence 35567788999888887776542 2 24778776522 1112222221 123334588
Q ss_pred CCCCCeEEEE----eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC---------------
Q 018322 239 PITTGRLVTG----DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--------------- 299 (358)
Q Consensus 239 ~~~~~~l~sg----s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--------------- 299 (358)
|+|..+...+ +.+..|.-+|+.+..... + .......-+--++++. +|+-=+.|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-----~-~~~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~ 319 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-----L-MEMPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIEND 319 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEE-----E-EEE-SEEEEEE-TTSS-EEEEEE------------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceE-----E-EeCCceeeeEEcCCCC-EEEecCCCCCccccccccceecCC
Confidence 8887433322 223356666666532211 1 1112333455578887 665544432
Q ss_pred -cEEEEECCCCCCeeEEEecCC----------C-CeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 300 -HIAIWDTRVGKSALTSFKAHN----------A-DVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 300 -~I~iwD~r~~~~~~~~~~~h~----------~-~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
.|+++++..+. ...+..|. . .=-..+|+|++..+|.+....|...||=
T Consensus 320 p~i~~~~~~~~~--~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 320 PWIYLFDVEAGR--FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp -EEEEEETTTTE--EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred cEEEEeccccCc--eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 56677776532 12222221 1 1134689999977777887888777764
No 425
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=82.12 E-value=22 Score=32.99 Aligned_cols=109 Identities=12% Similarity=0.181 Sum_probs=56.9
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCC--cccCC-CccccCCCcEEEEEECCC---CCCEEEEEECC------
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT--WNVDP-NPFIGHSASVEDLQWSPT---EPDVFASCSVD------ 298 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~--~~~~~-~~~~~h~~~V~~v~~sp~---~~~~las~s~D------ 298 (358)
..++|+|.|++. |+++...|.|++++. .+.. ..... ............++++|+ ...++++.+..
T Consensus 3 ~P~~~a~~pdG~--l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGR--LLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSC--EEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCc--EEEEeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 457899999974 555677999999993 3221 11111 223334567899999994 23244444422
Q ss_pred C--cEEEEECCCCC------CeeE-EEec---CCCCeEEEEEeCCCCcEEEEEeCCC
Q 018322 299 G--HIAIWDTRVGK------SALT-SFKA---HNADVNVISWNRLASCLLASGSDDG 343 (358)
Q Consensus 299 g--~I~iwD~r~~~------~~~~-~~~~---h~~~V~~i~~~p~~~~~lasgs~Dg 343 (358)
. .|.-|...... ..+. .+.. ....-..|.|.|++ .++++.++.+
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~ 135 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCC
Confidence 1 23333332210 1111 1122 23345779999999 7777766543
No 426
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.91 E-value=39 Score=30.51 Aligned_cols=78 Identities=14% Similarity=0.245 Sum_probs=46.2
Q ss_pred CCCCeEEEEeCCCCCCeEEEEe------CCCcEEEEecCCCCCcccCCCcc-ccCCCcEEEEEECC-CCCCEEEEEE-CC
Q 018322 228 HKDEGYAIDWNPITTGRLVTGD------CNSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSP-TEPDVFASCS-VD 298 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs------~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp-~~~~~las~s-~D 298 (358)
-.+.|++|.|..... ++++|. ....+..||+.+ ..|....... ..-.++|+.+.+.. +..++++.|. .+
T Consensus 35 i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~-~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~ 112 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKN-QTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN 112 (281)
T ss_pred ceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCC-CeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecC
Confidence 345899999986655 677764 456788899876 4553211111 12346788887743 3333665554 33
Q ss_pred C--cEEEEECC
Q 018322 299 G--HIAIWDTR 307 (358)
Q Consensus 299 g--~I~iwD~r 307 (358)
| .|..||=.
T Consensus 113 g~~~l~~~dGs 123 (281)
T PF12768_consen 113 GSTFLMKYDGS 123 (281)
T ss_pred CCceEEEEcCC
Confidence 3 46666543
No 427
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=81.75 E-value=41 Score=30.65 Aligned_cols=122 Identities=12% Similarity=0.176 Sum_probs=72.5
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCC---CcccCCCccc-----cCCCcEEEEEECCCCC-----------C
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA---TWNVDPNPFI-----GHSASVEDLQWSPTEP-----------D 290 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~---~~~~~~~~~~-----~h~~~V~~v~~sp~~~-----------~ 290 (358)
...|.|+++|.+. +.++....+...+||..... ........+. .-....+.+.|+.... .
T Consensus 23 ~N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 3578999999987 77887778999999986211 1000001111 1234566777764322 2
Q ss_pred EEEEEECCCcEEEEECCCCCC----eeEEEecC-CCCe-EEEEEeC--CCCcEEEEEeCCCCEEEEeCCC
Q 018322 291 VFASCSVDGHIAIWDTRVGKS----ALTSFKAH-NADV-NVISWNR--LASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~----~~~~~~~h-~~~V-~~i~~~p--~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.|+.++.||+|.-|....... .+..+... ...| .-+++.. .+..+.|+=-..++|.+||-.-
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 488999999999998644222 22223211 2334 3345543 3435555555789999998653
No 428
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.54 E-value=7.9 Score=22.91 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=21.9
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCC--CCEEEE
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDD--GTFSIH 348 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~D--g~i~iw 348 (358)
......-....|+|+|..++.++..+ |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455667889999996666677677 777776
No 429
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=81.50 E-value=73 Score=33.35 Aligned_cols=129 Identities=14% Similarity=0.099 Sum_probs=77.5
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE--c-CCCCCeEEEEeCCCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--G-GHKDEGYAIDWNPITT 242 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~h~~~v~~l~~s~~~~ 242 (358)
.+...|+|+|.....||+....|...||++..........-.. .......+ . .....-..|.|.++..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~---------~~~~~gsi~~d~~e~s~w~rI~W~~~~~ 216 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRL---------SRNISGSIIFDPEELSNWKRILWVSDSN 216 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceee---------ccCCCccccCCCcccCcceeeEecCCCC
Confidence 4778899999887899999999999999992211110000000 00000111 0 0113445889988876
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
.|+.++ ...+.++|+.+...... .........|.+++-+|.....++.- ....|...+++.
T Consensus 217 -~lLv~~-r~~l~~~d~~~~~~~~~--l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 217 -RLLVCN-RSKLMLIDFESNWQTEY--LVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred -EEEEEc-CCceEEEECCCCCccch--hccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 788877 45789999976433111 11222456799999998844333333 236788888877
No 430
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.47 E-value=12 Score=32.43 Aligned_cols=68 Identities=12% Similarity=0.216 Sum_probs=46.3
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccC--CCccc--------cCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVD--PNPFI--------GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~--~~~~~--------~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
..+. +|++-..+|.+++||+.+....... ..++. .....|..+..+.+|. -+++-+ +|..+.|+...
T Consensus 20 ~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 20 CNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred eCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEEEecccc
Confidence 3455 8888899999999999874322111 11111 3556788899998886 566655 47889998876
Q ss_pred C
Q 018322 309 G 309 (358)
Q Consensus 309 ~ 309 (358)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 431
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.24 E-value=69 Score=32.85 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=24.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRS 197 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~ 197 (358)
+.+-.+.|+.+. -|++-..+|+|++|++..
T Consensus 84 ~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 84 GELIGMGWSDDE--ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred CCeeeecccCCc--eEEEEeccceEEEeecch
Confidence 478888898877 455568999999999876
No 432
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.34 E-value=45 Score=30.19 Aligned_cols=125 Identities=10% Similarity=0.156 Sum_probs=74.2
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEe
Q 018322 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD 249 (358)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs 249 (358)
.|.+...+ .++++-=.++.+.++.+........... ..-++...........+++|.|... .|..+-
T Consensus 133 ~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~~~~~~~-----------~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aK 199 (316)
T COG3204 133 TIEYIGGN-QFVIVDERDRALYLFTVDADTTVISAKV-----------QKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAK 199 (316)
T ss_pred HeEEecCC-EEEEEehhcceEEEEEEcCCccEEeccc-----------eEEeccccCCCCcCceeeecCCCCc-eEEEEE
Confidence 34555444 5555555677888887766322211100 0011111212244677999999998 777777
Q ss_pred CCCcEEEEecCCCCCcccCCCccccCC-------CcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 250 CNSCIYLWEPASDATWNVDPNPFIGHS-------ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~~~~~~~~h~-------~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
...-+.||.+....... .......++ ..|.++.|++...++++-+..++.+.-.|..-
T Consensus 200 Er~P~~I~~~~~~~~~l-~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 200 ERNPIGIFEVTQSPSSL-SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccCCcEEEEEecCCccc-ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 77788888775322111 011111122 35677889988777899999999998888775
No 433
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=80.15 E-value=55 Score=32.13 Aligned_cols=98 Identities=18% Similarity=0.265 Sum_probs=54.9
Q ss_pred eEEEEeCCCcEEEEecCCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEE-----------------ECCCcEEEEE
Q 018322 244 RLVTGDCNSCIYLWEPASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASC-----------------SVDGHIAIWD 305 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~-----------------s~Dg~I~iwD 305 (358)
.++.++.+|.+...|..++.. |.. ... ...++.+| +. +++.. ..+|.|.-.|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~---~~~-----~~~~~~~~-~~-vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISAR---PEV-----EQPMAYDP-GL-VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEe---Eee-----ccccccCC-ce-EEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 577888899999999987532 210 010 11123333 21 33311 2357788888
Q ss_pred CCCCCCeeEEEecCC--------CCe--EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 306 TRVGKSALTSFKAHN--------ADV--NVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~--------~~V--~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+++++ .+.+..... ... ..+.. .+ .+|+.|+.||.|+.+|.++++.
T Consensus 373 ~~tG~-~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 373 PKTGK-VVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred CCCCc-EeeEeeCCccccccccCCcccCcceEe--cC-CeEEEECCCCeEEEEECCCCce
Confidence 88753 444432210 111 11111 33 5788888999999999988764
No 434
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.70 E-value=38 Score=29.68 Aligned_cols=113 Identities=8% Similarity=0.030 Sum_probs=63.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC----CCeEEEEeCCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK----DEGYAIDWNPIT 241 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~s~~~ 241 (358)
+--|.+.|..+...+..+-+.+-+|.-||.......+. +.+.++.+...+ -..-.++....|
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s--------------nr~~i~dlrk~~~~e~~~PDGm~ID~eG 223 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS--------------NRKVIFDLRKSQPFESLEPDGMTIDTEG 223 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCccccc--------------CcceeEEeccCCCcCCCCCCcceEccCC
Confidence 34466777766656667777777888888654322111 122223222211 111233334456
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC-CCEEEEEEC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSV 297 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~ 297 (358)
. +.+++-+.++|...|+.++.. . ..+.--+..|++++|--.+ .-+.+++..
T Consensus 224 ~-L~Va~~ng~~V~~~dp~tGK~-L---~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 224 N-LYVATFNGGTVQKVDPTTGKI-L---LEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred c-EEEEEecCcEEEEECCCCCcE-E---EEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 5 777777888999999988433 2 3344447889999996432 313444443
No 435
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=78.58 E-value=53 Score=30.01 Aligned_cols=107 Identities=13% Similarity=0.221 Sum_probs=55.1
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
.-...+..+.-++++. +++++.......-|+.-. ..|.. .-..-...|..+.|.|++. +.+ ....|.|+.=+.
T Consensus 142 ~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~-~~w~~---~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~ 214 (302)
T PF14870_consen 142 ETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQ-TTWQP---HNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDD 214 (302)
T ss_dssp S----EEEEEE-TTS--EEEEETTSSEEEEE-TT--SS-EE---EE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-
T ss_pred CCcceeEeEEECCCCc-EEEEECcccEEEEecCCC-ccceE---EccCccceehhceecCCCC-EEE-EeCCcEEEEccC
Confidence 3346788888889987 777776444445676532 22321 1112357899999999987 555 448899998872
Q ss_pred CCCCC----eeEEEecCCCCeEEEEEeCCCCcEEEEEeC
Q 018322 307 RVGKS----ALTSFKAHNADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 307 r~~~~----~~~~~~~h~~~V~~i~~~p~~~~~lasgs~ 341 (358)
..... ++..+....-.+..++|.+.+ .+.|+|+.
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~ 252 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGGS 252 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEEST
T ss_pred CCCccccccccCCcccCceeeEEEEecCCC-CEEEEeCC
Confidence 22111 111111223347889999887 77777654
No 436
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=77.32 E-value=26 Score=33.52 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=33.1
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRS 197 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~ 197 (358)
+...+......+.+|..+|.+ .++|+...=|.|.|+|+..
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~ 338 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVAR 338 (415)
T ss_pred eEEeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCC
Confidence 335566677889999999998 7888877779999999987
No 437
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=77.21 E-value=15 Score=36.65 Aligned_cols=71 Identities=18% Similarity=0.319 Sum_probs=40.2
Q ss_pred CeEEEEeCCCcEEEEecCC----CCCcccC----------CCccc--------cCCCcEEEEEECC---CCCCEEEEEEC
Q 018322 243 GRLVTGDCNSCIYLWEPAS----DATWNVD----------PNPFI--------GHSASVEDLQWSP---TEPDVFASCSV 297 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~----~~~~~~~----------~~~~~--------~h~~~V~~v~~sp---~~~~~las~s~ 297 (358)
+.|+.+..||.+....... +..+... ...+. .-...+.++++++ .+..++++.+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 3788888899888887654 1111110 01110 0123456666666 23449999999
Q ss_pred CCcEEEEECCCCCCeeE
Q 018322 298 DGHIAIWDTRVGKSALT 314 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~ 314 (358)
|+.+|+||+.++ .++.
T Consensus 239 D~~LRiW~l~t~-~~~~ 254 (547)
T PF11715_consen 239 DHTLRIWSLETG-QCLA 254 (547)
T ss_dssp TSEEEEEETTTT-CEEE
T ss_pred CCeEEEEECCCC-eEEE
Confidence 999999999985 4533
No 438
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=76.58 E-value=66 Score=29.98 Aligned_cols=106 Identities=8% Similarity=-0.005 Sum_probs=57.3
Q ss_pred EEEEc-CCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE-EEEeCCCCCCeEEE
Q 018322 170 RIRAM-TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY-AIDWNPITTGRLVT 247 (358)
Q Consensus 170 ~i~~~-p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~~~l~s 247 (358)
.+.+. +.+..++.....+|--+||-+... ......+....-.|. -+.|++.+...+.+
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~--------------------~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~ 298 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLD--------------------GGKPRQLTSGDWEVTSILGWDEDNNRIYFT 298 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETT--------------------SSEEEESS-SSS-EEEEEEEECTSSEEEEE
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccc--------------------ccceeccccCceeecccceEcCCCCEEEEE
Confidence 45554 666667777778887666665541 222233443344664 47788877645556
Q ss_pred EeCC--CcEEEEecCCC-CCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC
Q 018322 248 GDCN--SCIYLWEPASD-ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (358)
Q Consensus 248 gs~d--g~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (358)
|..+ +.-+||-+.-. +... ..++........++|||++..++.+++.-
T Consensus 299 a~~~~p~~r~lY~v~~~~~~~~---~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 299 ANGDNPGERHLYRVSLDSGGEP---KCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp ESSGGTTSBEEEEEETTETTEE---EESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred ecCCCCCceEEEEEEeCCCCCe---EeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 6543 35555555432 2222 22222222226899999999777777753
No 439
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=76.50 E-value=36 Score=26.95 Aligned_cols=109 Identities=14% Similarity=0.215 Sum_probs=62.2
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCccc---CCCccccCCCcEEEEEECC----CCCCEEEEEECCCcEEEEECCC
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNV---DPNPFIGHSASVEDLQWSP----TEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~---~~~~~~~h~~~V~~v~~sp----~~~~~las~s~Dg~I~iwD~r~ 308 (358)
.|....+ .|+.++.-|.|.|++......... ....+..-...|++|+-.+ ++...|+.|+ ...|..||+..
T Consensus 5 kfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 4555566 788888899999999865322110 0112333456677775433 2344666665 56889999987
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCC---CcEEEEEeCCCCEEEEe
Q 018322 309 GKSALTSFKAHNADVNVISWNRLA---SCLLASGSDDGTFSIHD 349 (358)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~~p~~---~~~lasgs~Dg~i~iwD 349 (358)
... ..++.-...|++|.+-..+ ..+++.|+ +..|.-||
T Consensus 83 N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd 123 (136)
T PF14781_consen 83 NSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFD 123 (136)
T ss_pred Cch--hhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeC
Confidence 432 2233344668888774322 24555554 34444444
No 440
>PHA02713 hypothetical protein; Provisional
Probab=76.35 E-value=61 Score=32.47 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=49.7
Q ss_pred eEEEEeCCC-----cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC-------------------
Q 018322 244 RLVTGDCNS-----CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG------------------- 299 (358)
Q Consensus 244 ~l~sgs~dg-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg------------------- 299 (358)
+.+.|+.++ ++..||+.+ ..|.... ++.........+.. ++. +++.|+.++
T Consensus 354 IYviGG~~~~~~~~sve~Ydp~~-~~W~~~~-~mp~~r~~~~~~~~--~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 354 IYAIGGQNGTNVERTIECYTMGD-DKWKMLP-DMPIALSSYGMCVL--DQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred EEEECCcCCCCCCceEEEEECCC-CeEEECC-CCCcccccccEEEE--CCE-EEEEeCCCcccccccccccccccccccc
Confidence 666676653 478899876 5565321 12111111112222 355 777777653
Q ss_pred ----cEEEEECCCCCCe-eEEEecCCCCeEEEEEeCCCCcEEEEEeCCC------CEEEEeCCC
Q 018322 300 ----HIAIWDTRVGKSA-LTSFKAHNADVNVISWNRLASCLLASGSDDG------TFSIHDLRL 352 (358)
Q Consensus 300 ----~I~iwD~r~~~~~-~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg------~i~iwDlr~ 352 (358)
.+..||.++.... +..+.........+.+ ++ .+.+.||.++ .+..||..+
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~-~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KD-DIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEE--CC-EEEEEeCCCCCCccceeEEEecCCC
Confidence 4777888764221 1111111111111222 34 6777777542 366788876
No 441
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=75.96 E-value=58 Score=30.58 Aligned_cols=105 Identities=17% Similarity=0.168 Sum_probs=54.8
Q ss_pred CeEEEEeCCCCCCeEEEEe-----------CCC-cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC
Q 018322 231 EGYAIDWNPITTGRLVTGD-----------CNS-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs-----------~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (358)
...+|+|.+.+. ++++-. ..+ .|.+++-.+..........+.......+.++|.+++ ++++. ..
T Consensus 15 ~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-~~ 90 (367)
T TIGR02604 15 NPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-PP 90 (367)
T ss_pred CCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC-CC
Confidence 455789988876 544432 223 777776543221111112333333456788998877 56653 33
Q ss_pred CcEEEEECCCC-----CC-eeEE-Eec----CCCCeEEEEEeCCCCcEEEEEe
Q 018322 299 GHIAIWDTRVG-----KS-ALTS-FKA----HNADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 299 g~I~iwD~r~~-----~~-~~~~-~~~----h~~~V~~i~~~p~~~~~lasgs 340 (358)
..+++.|.... .. .+.. +.. +....+.+.|.|+| .+.++-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence 33344455321 11 1111 211 23447889999999 6665544
No 442
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=75.69 E-value=48 Score=33.32 Aligned_cols=102 Identities=17% Similarity=0.300 Sum_probs=54.3
Q ss_pred eEEEEeCC------CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCc-----EEEEECCCCCCe
Q 018322 244 RLVTGDCN------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH-----IAIWDTRVGKSA 312 (358)
Q Consensus 244 ~l~sgs~d------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~-----I~iwD~r~~~~~ 312 (358)
+.++|+.+ .++..||..+ +.|.... +...-..... ++. -++. +++.|+.|+. |-.||.++....
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t-~~W~~~~-~M~~~R~~~g-~a~-~~~~-iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPET-NTWTLIA-PMNTRRSGFG-VAV-LNGK-IYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCC-CceeecC-Ccccccccce-EEE-ECCE-EEEECCccCCCccceEEEEcCCCCcee
Confidence 56667644 4567888876 5665321 1111111111 222 2344 8888888763 777888875432
Q ss_pred eEE-EecCCCCeEEEEEeCCCCcEEEEEeCCC-----CEEEEeCCCC
Q 018322 313 LTS-FKAHNADVNVISWNRLASCLLASGSDDG-----TFSIHDLRLL 353 (358)
Q Consensus 313 ~~~-~~~h~~~V~~i~~~p~~~~~lasgs~Dg-----~i~iwDlr~~ 353 (358)
+.. .....+.+-...+ ++ .+.+.|+.|| +|-.||..+.
T Consensus 505 ~v~~m~~~rs~~g~~~~--~~-~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 505 MVAPMTSPRSAVGVVVL--GG-KLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EcccCccccccccEEEE--CC-EEEEEecccCccccceeEEcCCCCC
Confidence 222 2222333333333 23 7888998876 4666666544
No 443
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=75.67 E-value=13 Score=22.11 Aligned_cols=32 Identities=13% Similarity=0.332 Sum_probs=22.7
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|+++.++++...+++|.++|..+. ..+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~-~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN-KVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC-eEEEEEEC
Confidence 456657788888999999999774 34444443
No 444
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=73.82 E-value=82 Score=29.81 Aligned_cols=122 Identities=16% Similarity=0.068 Sum_probs=72.2
Q ss_pred CCeEEEEe--CCC-CCCeEEEEeCCCcEEEEecCCCCCc-c--cCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 230 DEGYAIDW--NPI-TTGRLVTGDCNSCIYLWEPASDATW-N--VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 230 ~~v~~l~~--s~~-~~~~l~sgs~dg~I~lwd~~~~~~~-~--~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
.+++.+|. ++. +.-+++....+|.+..|-+...+.. + ...+.|.. .+.++.+....... .|..+-.+.-|.-
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g-~LYvgEE~~GIW~ 233 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETG-RLYVGEEDVGIWR 233 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTT-EEEEEETTTEEEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccC-CEEEecCccEEEE
Confidence 35677765 443 4436677788999999988632221 1 11233433 45788888887666 8888999988888
Q ss_pred EECCCCCC----eeEEEe--cCCCCeEEEEEeC--CCC-cEEEEEeCCCCEEEEeCCCC
Q 018322 304 WDTRVGKS----ALTSFK--AHNADVNVISWNR--LAS-CLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 304 wD~r~~~~----~~~~~~--~h~~~V~~i~~~p--~~~-~~lasgs~Dg~i~iwDlr~~ 353 (358)
|+...... .+.... ....+|-.|+.-. ++. ++|+|.-.+++..||+.+..
T Consensus 234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 88763221 121221 2346788887743 322 56666667889999997653
No 445
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=73.58 E-value=63 Score=28.37 Aligned_cols=107 Identities=8% Similarity=0.099 Sum_probs=64.8
Q ss_pred eEEEEeCCCCCCeEEEEeCCCcEEEEec--CCCCCc----ccCCCccccCCCc-EEEEEECCCCCCEEEEEECCCcEEEE
Q 018322 232 GYAIDWNPITTGRLVTGDCNSCIYLWEP--ASDATW----NVDPNPFIGHSAS-VEDLQWSPTEPDVFASCSVDGHIAIW 304 (358)
Q Consensus 232 v~~l~~s~~~~~~l~sgs~dg~I~lwd~--~~~~~~----~~~~~~~~~h~~~-V~~v~~sp~~~~~las~s~Dg~I~iw 304 (358)
-.+|+|+.+..-+.++-+.+-.|.-||. .++... +...+..+..... --.++..-.|. +++++-..++|...
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEE
Confidence 3478999777645566677888877884 332110 0001111111111 11233344555 99999999999999
Q ss_pred ECCCCCCeeEEEecCCCCeEEEEEeCC-CCcEEEEEe
Q 018322 305 DTRVGKSALTSFKAHNADVNVISWNRL-ASCLLASGS 340 (358)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~~p~-~~~~lasgs 340 (358)
|..++ +.+..+.-....|++++|--- -.-+.+|+.
T Consensus 239 dp~tG-K~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 239 DPTTG-KILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred CCCCC-cEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 99996 467777777888999999643 213444543
No 446
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=73.17 E-value=1.3e+02 Score=31.64 Aligned_cols=178 Identities=8% Similarity=0.094 Sum_probs=99.0
Q ss_pred cCCCceeEEEEc---CC---CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC---CCeE
Q 018322 163 AHQGCVNRIRAM---TQ---NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK---DEGY 233 (358)
Q Consensus 163 ~H~~~V~~i~~~---p~---~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~ 233 (358)
.-..+|..|+|. .. .+.+|++-.. ..+.|+...-+....... .........++..+..+. .+..
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~-~st~I~~p~~~~~~~~~~------~~~s~i~~~~l~~i~~~~tgg~~~a 149 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTE-TSTTILRPEYHRVISSIR------SRPSRIDPNPLLTISSSDTGGFPHA 149 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcC-CEEEEEEccccccccccc------CCccccccceeEEechhhcCCCccc
Confidence 466888888888 22 1246665443 467777733221100000 000001235555555332 2667
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccC-CCcc---ccC-------CCcEEEEEECCCCCCEEEEEECCCcEE
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD-PNPF---IGH-------SASVEDLQWSPTEPDVFASCSVDGHIA 302 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~-~~~~---~~h-------~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (358)
.++|+|...+.||+.+..|...||++....+.... .... .|+ .+.-..|.|.++.. .|+.|+. ..+.
T Consensus 150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~~r-~~l~ 227 (765)
T PF10214_consen 150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-RLLVCNR-SKLM 227 (765)
T ss_pred eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC-EEEEEcC-CceE
Confidence 89999988779999999999999999221111000 0111 111 13334788988776 5555554 6788
Q ss_pred EEECCCCCCee-EEEecCCCCeEEEEEeCCCC--cEEEEEeCCCCEEEEeCCC
Q 018322 303 IWDTRVGKSAL-TSFKAHNADVNVISWNRLAS--CLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 303 iwD~r~~~~~~-~~~~~h~~~V~~i~~~p~~~--~~lasgs~Dg~i~iwDlr~ 352 (358)
++|+......- .........|..+.-++... .+|+|. ..|...+++.
T Consensus 228 ~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs---~eiiw~~~~~ 277 (765)
T PF10214_consen 228 LIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS---KEIIWLDVKS 277 (765)
T ss_pred EEECCCCCccchhccCCChhheeeEEecCCccceEEEEec---CeEEEEEccC
Confidence 89998754311 22233456788888877722 233332 4576667665
No 447
>PHA03098 kelch-like protein; Provisional
Probab=72.55 E-value=61 Score=32.12 Aligned_cols=103 Identities=11% Similarity=0.146 Sum_probs=49.1
Q ss_pred eEEEEeCC-----CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC------CcEEEEECCCCCCe
Q 018322 244 RLVTGDCN-----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD------GHIAIWDTRVGKSA 312 (358)
Q Consensus 244 ~l~sgs~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D------g~I~iwD~r~~~~~ 312 (358)
+++.|+.+ ..+..||+.+ ..|.... ++....... +++. -++. +++.|+.. ..+..||+.+....
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~-~lp~~r~~~-~~~~-~~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGE-SKWREEP-PLIFPRYNP-CVVN-VNNL-IYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCC-CceeeCC-CcCcCCccc-eEEE-ECCE-EEEECCcCCCCcccceEEEEeCCCCeee
Confidence 66667654 3577788866 5554321 111111111 1121 2344 77777742 45788998763221
Q ss_pred e-EEEecCCCCeEEEEEeCCCCcEEEEEeCCC--------CEEEEeCCCCC
Q 018322 313 L-TSFKAHNADVNVISWNRLASCLLASGSDDG--------TFSIHDLRLLK 354 (358)
Q Consensus 313 ~-~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg--------~i~iwDlr~~~ 354 (358)
. ..+....... ++.. .++ .+++.||.++ .+.+||..+.+
T Consensus 420 ~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 420 KGSPLPISHYGG-CAIY-HDG-KIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred ecCCCCccccCc-eEEE-ECC-EEEEECCccCCCCCcccceEEEecCCCCc
Confidence 1 1111001111 1222 234 6777776532 37888887643
No 448
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=72.25 E-value=16 Score=36.36 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=24.5
Q ss_pred CeEEEEEeC---CCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 322 DVNVISWNR---LASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 322 ~V~~i~~~p---~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+..+++.. ++..+|++-+.|+++|+||+.+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 345566655 2337999999999999999998764
No 449
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=71.96 E-value=18 Score=21.31 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=20.1
Q ss_pred CCCCeEEEEeCCCCCCeEEEEeCC--CcEEEE
Q 018322 228 HKDEGYAIDWNPITTGRLVTGDCN--SCIYLW 257 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs~d--g~I~lw 257 (358)
....-....|+|+|..++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344667899999998455566666 666665
No 450
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=69.74 E-value=1.4e+02 Score=32.45 Aligned_cols=114 Identities=13% Similarity=0.063 Sum_probs=62.2
Q ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
.++.|.+++=- .|+|++|. ...|.||++...+..+ ...|..-.--|.+ ..--. ++++.|..-..|.+.-..
T Consensus 1096 ~KGtVsavceV---~G~l~~~~-GqKI~v~~l~r~~~li--gVaFiD~~~yv~s--~~~vk-nlIl~gDV~ksisfl~fq 1166 (1366)
T KOG1896|consen 1096 QKGTVSAVCEV---RGHLLSSQ-GQKIIVRKLDRDSELI--GVAFIDLPLYVHS--MKVVK-NLILAGDVMKSISFLGFQ 1166 (1366)
T ss_pred cccceEEEEEe---ccEEEEcc-CcEEEEEEeccCCcce--eeEEeccceeEEe--hhhhh-hheehhhhhhceEEEEEc
Confidence 34566666532 25888876 5689999994433321 1122211112222 22222 377777777777776665
Q ss_pred CCCCeeEEEe--cCCCCeEEEEEeCCCCc-EEEEEeCCCCEEEEeC
Q 018322 308 VGKSALTSFK--AHNADVNVISWNRLASC-LLASGSDDGTFSIHDL 350 (358)
Q Consensus 308 ~~~~~~~~~~--~h~~~V~~i~~~p~~~~-~lasgs~Dg~i~iwDl 350 (358)
.....+..+. ...-.+.++.|--+|+. .++.+..++.|+++-.
T Consensus 1167 eep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1167 EEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred cCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence 4222232222 22335777788766644 4666777898888743
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=67.97 E-value=1.2e+02 Score=29.10 Aligned_cols=110 Identities=11% Similarity=0.070 Sum_probs=61.2
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCccc-CCCc--cccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV-DPNP--FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~-~~~~--~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
..++++.|.+++. .++++ ..|.+.. ....+..+.. .... .......+.++.|.+++. +..++..|.+....
T Consensus 281 ~~l~~v~~~~dg~-l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~--~~a~G~~G~v~~s~- 354 (398)
T PLN00033 281 RRIQNMGWRADGG-LWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE--AWAAGGSGILLRST- 354 (398)
T ss_pred cceeeeeEcCCCC-EEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCc--EEEEECCCcEEEeC-
Confidence 4678999988876 55554 5666543 3323222210 0011 111224589999998876 45556678776653
Q ss_pred CCCCCeeEEE---ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEE
Q 018322 307 RVGKSALTSF---KAHNADVNVISWNRLASCLLASGSDDGTFSIH 348 (358)
Q Consensus 307 r~~~~~~~~~---~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iw 348 (358)
..++ .-... ..-...++.+.|.+.+ ..+++| .+|.|.-|
T Consensus 355 D~G~-tW~~~~~~~~~~~~ly~v~f~~~~-~g~~~G-~~G~il~~ 396 (398)
T PLN00033 355 DGGK-SWKRDKGADNIAANLYSVKFFDDK-KGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCc-ceeEccccCCCCcceeEEEEcCCC-ceEEEe-CCcEEEEe
Confidence 2222 11111 1223467899997766 666665 67877554
No 452
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=66.45 E-value=1e+02 Score=28.03 Aligned_cols=117 Identities=10% Similarity=-0.017 Sum_probs=70.3
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
+-+..+.++.+ +...+..+.-+++.|+.++..+.. ...+. -.+--.++ .-.|+ +...+.-|.-+.+.|+..+
T Consensus 87 ~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~-~~~ln-t~gyaygv--~vsGn-~aYVadlddgfLivdvsdp 158 (370)
T COG5276 87 DLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTL-IGFLN-TDGYAYGV--YVSGN-YAYVADLDDGFLIVDVSDP 158 (370)
T ss_pred hhhheeEeccc---EEEEEcCCCceEEEeccCCCCcce-ecccc-CCceEEEE--EecCC-EEEEeeccCcEEEEECCCC
Confidence 45556666643 677777788899999988655431 11111 11223333 34466 5555554556667899887
Q ss_pred CCeeEEE--ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 310 KSALTSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 310 ~~~~~~~--~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
..|...- ......-..++.+- .+-..+..|+-+.|-|+.+...|.
T Consensus 159 ssP~lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPv 205 (370)
T COG5276 159 SSPQLAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPV 205 (370)
T ss_pred CCceeeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCe
Confidence 6655433 22233335566653 445555678889999999887764
No 453
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.09 E-value=2.1e+02 Score=31.46 Aligned_cols=77 Identities=10% Similarity=0.141 Sum_probs=49.0
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEec--CCCCCcccC------------------CCccc-cCCCcEEEEEEC
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP--ASDATWNVD------------------PNPFI-GHSASVEDLQWS 285 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~--~~~~~~~~~------------------~~~~~-~h~~~V~~v~~s 285 (358)
.....|.|+....+| ++.-|+.|| +||.+ .....|... .-.+. .+..+|..+...
T Consensus 176 ~dg~~V~~I~~t~nG--RIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENG--RIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred cCCceEEEEEeccCC--cEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 334567788855555 555556677 45544 222212100 01122 467789999987
Q ss_pred CCCCCEEEEEECCCcEEEEECCC
Q 018322 286 PTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~ 308 (358)
..-. ++.+-+..|+|++||+..
T Consensus 252 ~SR~-IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRN-ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccc-eeeeeccCceEEEEEccC
Confidence 6655 999999999999999976
No 454
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=65.72 E-value=89 Score=26.96 Aligned_cols=103 Identities=10% Similarity=0.122 Sum_probs=58.8
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC---C---cEEEE---ECC-CCCCee
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD---G---HIAIW---DTR-VGKSAL 313 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D---g---~I~iw---D~r-~~~~~~ 313 (358)
.|+.+...+.|.+|++....... ...|..- +.|..+.++..|. +++|--.+ . .+|+| ... ....++
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~--~~~F~Tv-~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPL--LCTFSTV-GRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCce--eEEEcch-hheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 44444556789999998432221 2334332 7899999999998 77775432 2 56665 222 111122
Q ss_pred E-EEec---------------------CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 314 T-SFKA---------------------HNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 314 ~-~~~~---------------------h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
. ++-+ -...+.+|+..|..+++|+. + ++++.||-++.
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg-~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG-C-GNKLVLFTLKY 164 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE-c-CCEEEEEEEEE
Confidence 1 1112 13357788888876455553 3 46788887653
No 455
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=64.51 E-value=1.2e+02 Score=27.88 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=68.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCC-cEEEcC-----CCCCeEEEEeCC
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP-LVKFGG-----HKDEGYAIDWNP 239 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----h~~~v~~l~~s~ 239 (358)
-.-+.|.++|.+ .+-++....+...+||........ ..++ +..+.. -....+.+.|+.
T Consensus 23 ~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g---------------~~~~L~vtiP~~~~~~~~~~PTGiVfN~ 86 (336)
T TIGR03118 23 RNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPL---------------VQDPLVVVIPAPPPLAAEGTPTGQVFNG 86 (336)
T ss_pred cccceeEecCCC-CEEEecCCcceEEeecCCcccccC---------------CccceEEEecCCCCCCCCCCccEEEEeC
Confidence 345789999988 466666777899999997321100 0111 111111 112345555553
Q ss_pred CC-----------CCeEEEEeCCCcEEEEecCCCCCcccC-CCccc-cCCCcE-EEEEECC--CCCCEEEEEECCCcEEE
Q 018322 240 IT-----------TGRLVTGDCNSCIYLWEPASDATWNVD-PNPFI-GHSASV-EDLQWSP--TEPDVFASCSVDGHIAI 303 (358)
Q Consensus 240 ~~-----------~~~l~sgs~dg~I~lwd~~~~~~~~~~-~~~~~-~h~~~V-~~v~~sp--~~~~~las~s~Dg~I~i 303 (358)
.. ...++.++.||+|.-|...-....... ...+. +....| ..+++.. .+..+.|+--..++|.+
T Consensus 87 ~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDV 166 (336)
T TIGR03118 87 SDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDV 166 (336)
T ss_pred CCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEE
Confidence 22 125788899999999986432220000 01111 112333 3455543 34546666667899999
Q ss_pred EECCC
Q 018322 304 WDTRV 308 (358)
Q Consensus 304 wD~r~ 308 (358)
||-.-
T Consensus 167 Fd~~f 171 (336)
T TIGR03118 167 FKGSF 171 (336)
T ss_pred ecCcc
Confidence 98643
No 456
>PLN02193 nitrile-specifier protein
Probab=63.59 E-value=1.4e+02 Score=29.06 Aligned_cols=62 Identities=10% Similarity=0.123 Sum_probs=31.1
Q ss_pred eEEEEeCCC-----cEEEEecCCCCCcccCCCc--cccCCCcEEEEEECCCCCCEEEEEECC----CcEEEEECCCC
Q 018322 244 RLVTGDCNS-----CIYLWEPASDATWNVDPNP--FIGHSASVEDLQWSPTEPDVFASCSVD----GHIAIWDTRVG 309 (358)
Q Consensus 244 ~l~sgs~dg-----~I~lwd~~~~~~~~~~~~~--~~~h~~~V~~v~~sp~~~~~las~s~D----g~I~iwD~r~~ 309 (358)
+++.|+.++ .+..||+.+ ..|...... ..........+.+ .+. +++.++.+ ..+.+||+.+.
T Consensus 281 iYv~GG~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~R~~~~~~~~--~gk-iyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 281 VYVFGGVSATARLKTLDSYNIVD-KKWFHCSTPGDSFSIRGGAGLEVV--QGK-VWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EEEECCCCCCCCcceEEEEECCC-CEEEeCCCCCCCCCCCCCcEEEEE--CCc-EEEEECCCCCccCceEEEECCCC
Confidence 566666543 466788765 455422110 0001111111222 344 67777655 46889998874
No 457
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=62.32 E-value=30 Score=20.40 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=17.2
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCC
Q 018322 175 TQNPHICASWADTGHVQVWDLRS 197 (358)
Q Consensus 175 p~~~~~lat~s~dg~V~iwd~~~ 197 (358)
|++..++++...+++|.++|...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~ 23 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT 23 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC
Confidence 44546777777788999999865
No 458
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=62.30 E-value=77 Score=25.12 Aligned_cols=117 Identities=10% Similarity=0.078 Sum_probs=66.4
Q ss_pred eEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC----CCe
Q 018322 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT----TGR 244 (358)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~----~~~ 244 (358)
..-+|....| .|++++.-|+|.|++.......... ...++..+ .-...|++|+-.+.. ...
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~-------------~~~~i~~L-Nin~~italaaG~l~~~~~~D~ 66 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR-------------QDSDISFL-NINQEITALAAGRLKPDDGRDC 66 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCcccccccc-------------ccCceeEE-ECCCceEEEEEEecCCCCCcCE
Confidence 3446777775 6777788899999998763221110 12344444 334577888655532 227
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC---CCCCEEEEEECCCcEEEEECC
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP---TEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp---~~~~~las~s~Dg~I~iwD~r 307 (358)
|+.|+ ...|..||+...... -+..-...|+++.+-. ... -++.++-...|.-||..
T Consensus 67 LliGt-~t~llaYDV~~N~d~-----Fyke~~DGvn~i~~g~~~~~~~-~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 67 LLIGT-QTSLLAYDVENNSDL-----FYKEVPDGVNAIVIGKLGDIPS-PLVIVGGNCSIQGFDYE 125 (136)
T ss_pred EEEec-cceEEEEEcccCchh-----hhhhCccceeEEEEEecCCCCC-cEEEECceEEEEEeCCC
Confidence 88887 558899999763321 1222345666666522 112 34444445666666654
No 459
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=61.02 E-value=1.6e+02 Score=28.25 Aligned_cols=55 Identities=13% Similarity=0.262 Sum_probs=38.6
Q ss_pred CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC-CCCeEEEEEeCCC
Q 018322 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-NADVNVISWNRLA 332 (358)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-~~~V~~i~~~p~~ 332 (358)
.+++..++.||+++ .+|.-..+|.+.+...... .....+... ......+.|+-+.
T Consensus 216 ~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 216 DGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFS-EKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCCeEEEEECCCCC-EEEEEECCCCEEEEECccc-ceeEEeecCcCCCCcEEEEECCC
Confidence 45799999999999 8899999999999876553 344444322 3345666776554
No 460
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=60.34 E-value=99 Score=29.91 Aligned_cols=169 Identities=14% Similarity=0.058 Sum_probs=92.3
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE-cCC-CCCeE-EEEeCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-GGH-KDEGY-AIDWNP 239 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~-~l~~s~ 239 (358)
.....|..+-..|++. .+..-+. .++.|+++.+..-.. ..+... .+. ...|+ ++..-.
T Consensus 218 ~~~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~-----------------rkl~~dspg~~~~~Vte~l~lL~ 278 (733)
T COG4590 218 VPFSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQI-----------------RKLVDDSPGDSRHQVTEQLYLLS 278 (733)
T ss_pred CCccchHhhEECCCCC-EEEEecC-CeEEEEeecccccch-----------------hhhhhcCCCchHHHHHHHHHHHh
Confidence 3457888889999994 4333333 578888887632111 000000 010 00111 121122
Q ss_pred CCCCeEEEEeCCCcEEEE-ecCCCCCcc-cCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 240 ITTGRLVTGDCNSCIYLW-EPASDATWN-VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lw-d~~~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
.+. -|++++.||.|.-| |.+..+... ...+.+.-...++.-+.=. +.+..|++-+..|++.++...+. +++..-.
T Consensus 279 Gg~-SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~-~~lL~~~ 355 (733)
T COG4590 279 GGF-SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSE-KLLLFER 355 (733)
T ss_pred Cce-eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccC-cceehhh
Confidence 233 67788889988877 555533321 0111122122333333222 22337889999999999876653 2332222
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
.. ..+..++++|.+ .+|++- +.|.++++.+.+..+.
T Consensus 356 ~~-~~~~~~~~Sp~~-~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 356 AY-QAPQLVAMSPNQ-AYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred hh-cCcceeeeCccc-chheee-cCCceEEEEecCCCCC
Confidence 22 256778999999 666654 4578999998876543
No 461
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=59.22 E-value=72 Score=28.38 Aligned_cols=35 Identities=9% Similarity=0.190 Sum_probs=26.8
Q ss_pred cCCCceeEEEEcCC------CCcEEEEEeCCCcEEEEeCCC
Q 018322 163 AHQGCVNRIRAMTQ------NPHICASWADTGHVQVWDLRS 197 (358)
Q Consensus 163 ~H~~~V~~i~~~p~------~~~~lat~s~dg~V~iwd~~~ 197 (358)
.+...|+|+..... ....++.|+++|.|+|.|-..
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~a 214 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQA 214 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchh
Confidence 35677788776543 356899999999999999766
No 462
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=58.77 E-value=24 Score=35.99 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=26.8
Q ss_pred CcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
..+++|+-+|.+. -|++++.||+|++|+...
T Consensus 15 e~~~aiqshp~~~-s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQ-SFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred ceeeeeeecCCCc-eEEEEecCCcEEEEeecc
Confidence 4577888899988 899999999999998754
No 463
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=57.71 E-value=2.1e+02 Score=28.53 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=89.9
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
.+-...|.++||+-+. -+++|--.--=+.+.|+... .+|. .+..-+-++++==.+|-+
T Consensus 322 la~gE~IysvRF~Gd~-~Y~VTFrqvDPLfviDLsdP--------------------~~P~-vlGeLKIPGfS~YLHP~~ 379 (521)
T PF09826_consen 322 LAPGERIYSVRFMGDR-AYLVTFRQVDPLFVIDLSDP--------------------ANPK-VLGELKIPGFSDYLHPYD 379 (521)
T ss_pred cCCCceEEEEEEeCCe-EEEEEEeecCceEEEECCCC--------------------CCCc-eeeEEECccchhceeECC
Confidence 3456789999999887 68888776556888898873 2221 111112244444456655
Q ss_pred CCeEEEEeCC------------CcEEEEecCCCCCcccCCCcccc----C---CCcEEEEEECCCCCCEEEEEEC-----
Q 018322 242 TGRLVTGDCN------------SCIYLWEPASDATWNVDPNPFIG----H---SASVEDLQWSPTEPDVFASCSV----- 297 (358)
Q Consensus 242 ~~~l~sgs~d------------g~I~lwd~~~~~~~~~~~~~~~~----h---~~~V~~v~~sp~~~~~las~s~----- 297 (358)
.++|+--+.+ =.|.|||+.....+........+ + ...-.++.|++... +|+.--.
T Consensus 380 e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~-ll~~Pv~~~~~~ 458 (521)
T PF09826_consen 380 ENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKN-LLAFPVSSSYGY 458 (521)
T ss_pred CCeEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCC-EEEEEEEEccCc
Confidence 5555443322 24678999775443211111111 0 01123577777665 5544322
Q ss_pred --CCcEEEEECCCCCC--eeEEEecCCC-------CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 298 --DGHIAIWDTRVGKS--ALTSFKAHNA-------DVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 298 --Dg~I~iwD~r~~~~--~~~~~~~h~~-------~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
-..+.|+.+..... ....+ .|.. .|....+..+ .|.+-+ ++.|+++|+.+++
T Consensus 459 ~~~~g~~v~~i~~~~g~~~~g~i-~h~~~~~~~~~~~~R~lyi~d---~lYtvS-~~~i~~~~l~t~~ 521 (521)
T PF09826_consen 459 FNFQGAYVFSIDPEDGFTLKGKI-THPSPDYYYSYQIQRSLYIGD---TLYTVS-DNGIKAYDLNTLE 521 (521)
T ss_pred cccceEEEEEEeCCCCeEEEEEE-EccCcccccccceeEEEEECC---EEEEEE-CCEEEEEehHhcC
Confidence 23566777762122 22222 3443 2666666543 355554 4679999998764
No 464
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=56.18 E-value=2e+02 Score=28.00 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=38.1
Q ss_pred EcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc-ccCCCcc-c-cCCCcEEEEEECCCC
Q 018322 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW-NVDPNPF-I-GHSASVEDLQWSPTE 288 (358)
Q Consensus 225 ~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~-~~~~~~~-~-~h~~~V~~v~~sp~~ 288 (358)
+...-...++|+|.|++. +|++--..|.|++++....... ......+ . .......+|+++|+-
T Consensus 25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 333345678999999985 5555444699999976442211 1111111 1 125678899999875
No 465
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=53.06 E-value=2.3e+02 Score=27.76 Aligned_cols=20 Identities=5% Similarity=0.212 Sum_probs=16.8
Q ss_pred eEEEEeCCCcEEEEecCCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDA 263 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~ 263 (358)
.++.++.+|.|+-+|.+++.
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGK 131 (488)
T ss_pred eEEEecCCCeEEEEECCCCC
Confidence 78888889999999988743
No 466
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.07 E-value=1.1e+02 Score=33.09 Aligned_cols=35 Identities=9% Similarity=0.090 Sum_probs=27.8
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRS 197 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~ 197 (358)
.+-......++|.|.. .++|.++.+|.|+++-...
T Consensus 32 ~G~~~~~~~~afD~~q-~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 32 HGFPSTPSALAFDPTQ-GLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred cCCCCCCcceeecccc-ceEEEEEecccEEEecccc
Confidence 3444556677888887 7999999999999998765
No 467
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=51.12 E-value=73 Score=32.99 Aligned_cols=99 Identities=10% Similarity=0.221 Sum_probs=53.6
Q ss_pred EEEEeCCCCCCeEEEEeCCC-----cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 233 YAIDWNPITTGRLVTGDCNS-----CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
..|.|-|+|. .++|-..|| .|..+..+. -.... ...-.+-...+..++|+-... +...+....|++|-..
T Consensus 250 ~~LSWkpqgS-~~ati~td~~~~S~~ViFfErNG-LrHGe-f~lr~~~dEk~~~~~wn~~s~--vlav~~~n~~~lwttk 324 (1243)
T COG5290 250 HQLSWKPQGS-KYATIGTDGCSTSESVIFFERNG-LRHGE-FDLRVGCDEKAFLENWNLLST--VLAVAEGNLLKLWTTK 324 (1243)
T ss_pred hccccccCCc-eeeeeccCCCCCcceEEEEccCC-cccCC-ccccCCchhhhhhhhhhHHHH--HHHHhhcceEEEEEcc
Confidence 3589999998 888866443 344444321 11000 000112234566778876664 3344556789999876
Q ss_pred CCCCeeEEEecCCCCeEEEEEeCCCCcEEE
Q 018322 308 VGKSALTSFKAHNADVNVISWNRLASCLLA 337 (358)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~~p~~~~~la 337 (358)
.-. ........-..+.-+.|+|...+.|.
T Consensus 325 Nyh-WYLK~e~~ip~~s~vkwhpe~~nTl~ 353 (1243)
T COG5290 325 NYH-WYLKVERQIPGISYVKWHPEEKNTLL 353 (1243)
T ss_pred ceE-EEEEEeecCCCcceeeeccccCcEEE
Confidence 632 22222333345667788886544433
No 468
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=50.60 E-value=1.6e+02 Score=28.12 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=24.8
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.|.+++..+.. ++|++...+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 48899998888 8999999999999999975
No 469
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=50.31 E-value=75 Score=27.37 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=32.8
Q ss_pred EEEEEECCCcEEEEECCCCC-CeeEEEecCCCCeEEEEEeCCCCcEEEEEe
Q 018322 291 VFASCSVDGHIAIWDTRVGK-SALTSFKAHNADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~-~~~~~~~~h~~~V~~i~~~p~~~~~lasgs 340 (358)
+|++ .....|-+|++.... .+..++. .-+.|..+.++..| .+|+|--
T Consensus 31 Lfva-~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~G-DYlvTlE 78 (215)
T PF14761_consen 31 LFVA-ASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAG-DYLVTLE 78 (215)
T ss_pred EEEE-cCCCEEEEEEcccCCCceeEEEc-chhheeEEEecccc-ceEEEEE
Confidence 4443 666789999998422 3444443 34779999999999 7887754
No 470
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=49.00 E-value=1.6e+02 Score=31.26 Aligned_cols=83 Identities=14% Similarity=0.136 Sum_probs=54.4
Q ss_pred CCcEEEEecCCCCCcccCCCcc-ccCCCcEEEEEECCCCCCEEEE-EECCC-----cEEEEECCCCCCeeEEEecCCCCe
Q 018322 251 NSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFAS-CSVDG-----HIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 251 dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las-~s~Dg-----~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.+.|.+-|...... +.+ ..++.+|.+-.|||+|+ .+|- .+..+ .|.+-++++...-...+...+..|
T Consensus 328 ~~~L~~~D~dG~n~-----~~ve~~~~~~i~sP~~SPDG~-~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aai 401 (912)
T TIGR02171 328 TGNLAYIDYTKGAS-----RAVEIEDTISVYHPDISPDGK-KVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAI 401 (912)
T ss_pred CCeEEEEecCCCCc-----eEEEecCCCceecCcCCCCCC-EEEEEEeecCCCCCceEEEEehhccCCCceEeecccccc
Confidence 34677777654222 223 34677888889999999 5555 44444 588889998665556676667777
Q ss_pred EEEEEeCCCCcEEEEE
Q 018322 324 NVISWNRLASCLLASG 339 (358)
Q Consensus 324 ~~i~~~p~~~~~lasg 339 (358)
-.-....+|...|+-.
T Consensus 402 prwrv~e~gdt~ivyv 417 (912)
T TIGR02171 402 PRWRVLENGDTVIVYV 417 (912)
T ss_pred cceEecCCCCeEEEEE
Confidence 7766777775554443
No 471
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=48.80 E-value=50 Score=23.90 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=26.2
Q ss_pred CcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
...+.|..+|+++.++++....+.|++|..+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 34567899999997888888899999997653
No 472
>PHA02790 Kelch-like protein; Provisional
Probab=47.82 E-value=2.8e+02 Score=27.15 Aligned_cols=61 Identities=8% Similarity=0.087 Sum_probs=32.4
Q ss_pred eEEEEeCC--CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC---cEEEEECCCC
Q 018322 244 RLVTGDCN--SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG---HIAIWDTRVG 309 (358)
Q Consensus 244 ~l~sgs~d--g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg---~I~iwD~r~~ 309 (358)
..+.|+.+ ..+..||..+ +.|... .++.........+.. ++. +++.||.++ .+..||.++.
T Consensus 321 iYviGG~~~~~sve~ydp~~-n~W~~~-~~l~~~r~~~~~~~~--~g~-IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 321 LYVVGGLPNPTSVERWFHGD-AAWVNM-PSLLKPRCNPAVASI--NNV-IYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred EEEECCcCCCCceEEEECCC-CeEEEC-CCCCCCCcccEEEEE--CCE-EEEecCcCCCCccEEEEeCCCC
Confidence 56667653 3577888755 455421 122211111122222 355 788887654 4678888763
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=47.73 E-value=2.3e+02 Score=26.10 Aligned_cols=165 Identities=12% Similarity=0.111 Sum_probs=82.7
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCc------EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGH------VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~------V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
.-|.+..|.+.+.+ ..+.+.+++|. ++.+.+................. -....+.+. ..-.-...+|++
T Consensus 18 ~~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~~~G~~~---~~~~~D~Egi~~ 92 (326)
T PF13449_consen 18 PFGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIP-LRDPDGQPF---PKNGLDPEGIAV 92 (326)
T ss_pred ccCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEecccee-ccCCCCCcC---CcCCCChhHeEE
Confidence 45888999999755 35556688888 66666654111000000000000 000001111 001113347777
Q ss_pred CCCCCCeEEEEeCC------CcEEEEecCCCCCccc---CCCcc---------ccCCCcEEEEEECCCCCCEEEEEEC--
Q 018322 238 NPITTGRLVTGDCN------SCIYLWEPASDATWNV---DPNPF---------IGHSASVEDLQWSPTEPDVFASCSV-- 297 (358)
Q Consensus 238 s~~~~~~l~sgs~d------g~I~lwd~~~~~~~~~---~~~~~---------~~h~~~V~~v~~sp~~~~~las~s~-- 297 (358)
.+++. ++++.-.+ ..|..++.. +.... ....+ ...+..+++|+++|++. .|.++..
T Consensus 93 ~~~g~-~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~~E~~ 168 (326)
T PF13449_consen 93 PPDGS-FWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAAMESP 168 (326)
T ss_pred ecCCC-EEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEEECcc
Confidence 66664 66665555 677777754 22211 01111 22456799999999998 4444433
Q ss_pred ---CC--c-------EEEE--ECCCCCCeeEEE----ec-----CCCCeEEEEEeCCCCcEEEE
Q 018322 298 ---DG--H-------IAIW--DTRVGKSALTSF----KA-----HNADVNVISWNRLASCLLAS 338 (358)
Q Consensus 298 ---Dg--~-------I~iw--D~r~~~~~~~~~----~~-----h~~~V~~i~~~p~~~~~las 338 (358)
|+ . ++|+ |..+...+...+ .. ....|..+.+-+++ .+|+.
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~-~lLvL 231 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG-RLLVL 231 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC-cEEEE
Confidence 22 1 5555 444322222222 21 34578889999998 55543
No 474
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=47.59 E-value=1.8e+02 Score=30.87 Aligned_cols=68 Identities=10% Similarity=0.022 Sum_probs=45.0
Q ss_pred cCCCCCeEEEEeCCCCCCeEEE-EeCCC-----cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 226 GGHKDEGYAIDWNPITTGRLVT-GDCNS-----CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~s-gs~dg-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
..+..++++-+|||+|. +|+= .+..+ .|++-++.+.+.-. ..+.-....|..-....+|.++|+-.+.
T Consensus 346 ~~~~~~i~sP~~SPDG~-~vAY~ts~e~~~g~s~vYv~~L~t~~~~~---vkl~ve~aaiprwrv~e~gdt~ivyv~~ 419 (912)
T TIGR02171 346 IEDTISVYHPDISPDGK-KVAFCTGIEGLPGKSSVYVRNLNASGSGL---VKLPVENAAIPRWRVLENGDTVIVYVSD 419 (912)
T ss_pred ecCCCceecCcCCCCCC-EEEEEEeecCCCCCceEEEEehhccCCCc---eEeecccccccceEecCCCCeEEEEEcC
Confidence 45677899999999998 6654 33333 58888998755432 2333345666666667777766666554
No 475
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=46.48 E-value=3.9e+02 Score=28.90 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=26.7
Q ss_pred CCCceeEEEEcC---CCCcEEEEEeCCCcEEEEeCCCCc
Q 018322 164 HQGCVNRIRAMT---QNPHICASWADTGHVQVWDLRSHL 199 (358)
Q Consensus 164 H~~~V~~i~~~p---~~~~~lat~s~dg~V~iwd~~~~~ 199 (358)
--|.|..++.-+ ..+.+||.+++.|.|.|..+..+.
T Consensus 58 vFg~Irsla~~~lt~~~kD~LaV~SDSGri~il~y~~ek 96 (1205)
T KOG1898|consen 58 VFGTIRSLAAFRLTGGTKDYLAVGSDSGRISILEYNNEK 96 (1205)
T ss_pred ehhhhhhhhccccCCCCccEEEEEcCCceEEEEEechhh
Confidence 445666655544 446899999999999999988743
No 476
>PHA02790 Kelch-like protein; Provisional
Probab=44.77 E-value=3.1e+02 Score=26.82 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=49.6
Q ss_pred eEEEEeCCC---cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee-EEEecC
Q 018322 244 RLVTGDCNS---CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL-TSFKAH 319 (358)
Q Consensus 244 ~l~sgs~dg---~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~-~~~~~h 319 (358)
+.+.|+.++ .+..||+.+ ..|..... ..........+.+ ++. +++.| |.+-+||.++..... ..+...
T Consensus 365 IYviGG~~~~~~~ve~ydp~~-~~W~~~~~-m~~~r~~~~~~~~--~~~-IYv~G---G~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 365 IYVIGGHSETDTTTEYLLPNH-DQWQFGPS-TYYPHYKSCALVF--GRR-LFLVG---RNAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred EEEecCcCCCCccEEEEeCCC-CEEEeCCC-CCCccccceEEEE--CCE-EEEEC---CceEEecCCCCcEeEcCCCCCC
Confidence 556666543 467888866 56653211 1111111112222 344 66666 457789987743211 111111
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCC-----CCEEEEeCCCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLK 354 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~D-----g~i~iwDlr~~~ 354 (358)
......+.+ ++ .+.+.||.+ ..+.+||..+.+
T Consensus 437 r~~~~~~v~--~~-~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 437 RDNPELIIV--DN-KLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ccccEEEEE--CC-EEEEECCcCCCcccceEEEEECCCCe
Confidence 111222222 45 788888764 357788887654
No 477
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=44.07 E-value=4.5e+02 Score=28.48 Aligned_cols=107 Identities=11% Similarity=0.118 Sum_probs=58.2
Q ss_pred eEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 232 v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
..-++.+|... ++++|- ...+++|++-...... ...+..-...|..++|.. . .++.|...-+|.++-.|....
T Consensus 936 ~~v~Ai~~f~~-~~Lagv-G~~l~~YdlG~K~lLR--k~e~k~~p~~Is~iqt~~--~-RI~VgD~qeSV~~~~y~~~~n 1008 (1205)
T KOG1898|consen 936 GPVGAICPFQG-RVLAGV-GRFLRLYDLGKKKLLR--KCELKFIPNRISSIQTYG--A-RIVVGDIQESVHFVRYRREDN 1008 (1205)
T ss_pred ccceEEeccCC-EEEEec-ccEEEEeeCChHHHHh--hhhhccCceEEEEEeecc--e-EEEEeeccceEEEEEEecCCC
Confidence 33456677765 777665 5689999996532211 112222356788888753 2 456666555555555444334
Q ss_pred eeEEEe--cCCCCeEEEEEeCCCCcEEEEEeCCCCEEE
Q 018322 312 ALTSFK--AHNADVNVISWNRLASCLLASGSDDGTFSI 347 (358)
Q Consensus 312 ~~~~~~--~h~~~V~~i~~~p~~~~~lasgs~Dg~i~i 347 (358)
.+..+. .-...|+++.+-..+ .+|.|..=|.+.+
T Consensus 1009 ~l~~fadD~~pR~Vt~~~~lD~~--tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1009 QLIVFADDPVPRHVTALELLDYD--TVAGADRFGNIAV 1044 (1205)
T ss_pred eEEEEeCCCccceeeEEEEecCC--ceeeccccCcEEE
Confidence 444442 223346666665444 4555544454444
No 478
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=43.92 E-value=3.8e+02 Score=27.54 Aligned_cols=178 Identities=12% Similarity=0.066 Sum_probs=0.0
Q ss_pred CCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeC---------CCCccccccccccccC
Q 018322 141 DEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDL---------RSHLNALAESETIVGQ 211 (358)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~---------~~~~~~~~~~~~~~~~ 211 (358)
....+++..+++.....+..+ .+.|-.|.+++++ ..+.+...+|.|.+||+ ..
T Consensus 108 ~~~~~~~~~~~e~~~~~~~kl---~~kvv~Ik~~~~~-~~I~vvl~nG~i~~~d~~~~~l~~~~~l-------------- 169 (670)
T PF10395_consen 108 VGSTEDGTVNSETTNEFELKL---DDKVVGIKFSSDG-KIIYVVLENGSIQIYDFSENSLEKVPQL-------------- 169 (670)
T ss_pred CccccccccCccccceEEEEc---ccceEEEEEecCC-CEEEEEEcCCcEEEEecccccccccccc--------------
Q ss_pred CCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEe---CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC
Q 018322 212 GAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD---CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE 288 (358)
Q Consensus 212 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs---~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~ 288 (358)
..........+ .-|.....-......|+.+. ..-..+++.+...............+.....+.+|+.+.
T Consensus 170 ------~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~ 242 (670)
T PF10395_consen 170 ------KLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQF 242 (670)
T ss_pred ------ccccccceehh-hhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeC
Q ss_pred CCEEEEEECCCcEEEEECCCCCCeeEEEecC-------CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 289 PDVFASCSVDGHIAIWDTRVGKSALTSFKAH-------NADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 289 ~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-------~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
. .+..- .++.|.+|.+.. .+...++.-- ...|.-.+.+++. -+| +.++.|++.|+
T Consensus 243 G-~LY~l-~~~~i~~ysip~-f~~~~tI~l~~ii~~~~~~~vSl~~~s~nR-vLL---s~~nkIyLld~ 304 (670)
T PF10395_consen 243 G-KLYQL-SKKTISSYSIPN-FQIQKTISLPSIIDKESDDLVSLKPPSPNR-VLL---SVNNKIYLLDL 304 (670)
T ss_pred C-EEEEE-eCCEEEEEEcCC-ceEEEEEEechhhccccccceEeecCCCCe-EEE---EcCCEEEEEee
No 479
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=43.72 E-value=29 Score=35.70 Aligned_cols=107 Identities=15% Similarity=0.329 Sum_probs=58.1
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCC-----cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTG-----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.|-=..+.|-|+| ..+||-+.|| .|..+..+... .+.+-... +.....+.++|+.
T Consensus 246 ~g~e~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLr------------------HGef~lr~-~~dEk~~~~~wn~ 305 (1243)
T COG5290 246 TGMEHQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLR------------------HGEFDLRV-GCDEKAFLENWNL 305 (1243)
T ss_pred ccchhccccccCC-ceeeeeccCCCCCcceEEEEccCCcc------------------cCCccccC-CchhhhhhhhhhH
Confidence 3444457899999 6777766444 24444443310 11221111 2233567889987
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
... .++.+- ...|.+|-..+ -.|.. ...-.-..+.-+.|+|...+.++..+.
T Consensus 306 ~s~-vlav~~-~n~~~lwttkN-yhWYL---K~e~~ip~~s~vkwhpe~~nTl~f~d~ 357 (1243)
T COG5290 306 LST-VLAVAE-GNLLKLWTTKN-YHWYL---KVERQIPGISYVKWHPEEKNTLLFRDG 357 (1243)
T ss_pred HHH-HHHHhh-cceEEEEEccc-eEEEE---EEeecCCCcceeeeccccCcEEEEecC
Confidence 765 555443 56899998755 23331 111122345567899887655554443
No 480
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=43.52 E-value=3.1e+02 Score=26.45 Aligned_cols=166 Identities=17% Similarity=0.152 Sum_probs=89.0
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
++-.+....|..+||+.+- .+++|--+.--+.+-|+.+.. .|. .+..-+-++++--.+
T Consensus 421 ltGl~~gERIYAvRf~gdv-~yiVTfrqtDPlfviDlsNPe--------------------nPk-vlGeLKIPGfS~YLH 478 (603)
T COG4880 421 LTGLAPGERIYAVRFVGDV-LYIVTFRQTDPLFVIDLSNPE--------------------NPK-VLGELKIPGFSEYLH 478 (603)
T ss_pred EeccCCCceEEEEEEeCce-EEEEEEeccCceEEEEcCCCC--------------------CCc-eeEEEecCCchhhcc
Confidence 3334456789999999887 688888887788899998732 221 222223355566677
Q ss_pred CCCCCeE-EEEeCCCc--EEEEecCCCCCcccC-CCcccc----CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 239 PITTGRL-VTGDCNSC--IYLWEPASDATWNVD-PNPFIG----HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 239 ~~~~~~l-~sgs~dg~--I~lwd~~~~~~~~~~-~~~~~~----h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
|-+.+++ -.|-.+|. |.++|+......... ...+.. --..-.++.|.|...-.|+-+...|.| +-+..+
T Consensus 479 pigen~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~gyi--f~iedg- 555 (603)
T COG4880 479 PIGENRLLGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGGYI--FFIEDG- 555 (603)
T ss_pred ccCCCcEEEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCccEE--EEEecC-
Confidence 8777654 46666664 557887653321100 000110 001123466777777455666666664 444443
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
..+..-..|...+-..-|-.+- +...|+. .+.+.|-.++
T Consensus 556 ~kl~k~~e~k~na~RA~fi~dy--lY~vg~~--ev~~ldensw 594 (603)
T COG4880 556 SKLRKRAERKLNADRAFFIKDY--LYLVGGN--EVWKLDENSW 594 (603)
T ss_pred ceeeehhhhcccceeeEEecce--EEEeccc--eeEEeccchH
Confidence 2233333455555444555433 3333332 3555554443
No 481
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=42.73 E-value=4.2e+02 Score=27.77 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=47.2
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccC------C---Ccc--cc----CCCcEEEEEECCCCCCEEEE
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD------P---NPF--IG----HSASVEDLQWSPTEPDVFAS 294 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~------~---~~~--~~----h~~~V~~v~~sp~~~~~las 294 (358)
..|.+++-...+. .++..-.||+|.++|-.+....... . ..+ .| +-..+..++|||++. .++.
T Consensus 260 ~~V~si~~~~~~~-~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c-~~v~ 337 (753)
T PF11635_consen 260 KRVVSITSPELDI-VVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC-SLVQ 337 (753)
T ss_pred CeEEEEEecccCc-EEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccc-eEEE
Confidence 4677888777776 8999999999999997664221100 0 000 01 112445688999998 7888
Q ss_pred EECCCcEE
Q 018322 295 CSVDGHIA 302 (358)
Q Consensus 295 ~s~Dg~I~ 302 (358)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888866
No 482
>PRK13684 Ycf48-like protein; Provisional
Probab=42.34 E-value=2.8e+02 Score=25.62 Aligned_cols=107 Identities=12% Similarity=0.141 Sum_probs=58.2
Q ss_pred CCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCC-CCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 229 KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD-ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 229 ~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
...++++.+.+++. ++++|. .|.+..- .... ..|.. ....-...++++.+.+++. +++. +..|.+++=...
T Consensus 172 ~g~~~~i~~~~~g~-~v~~g~-~G~i~~s-~~~gg~tW~~---~~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGK-YVAVSS-RGNFYST-WEPGQTAWTP---HQRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCe-EEEEeC-CceEEEE-cCCCCCeEEE---eeCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccCC
Confidence 34688899998765 555554 6655432 1222 23431 1122346789999999887 5554 456776542222
Q ss_pred CCCCeeEEEec----CCCCeEEEEEeCCCCcEEEEEeCCCCEE
Q 018322 308 VGKSALTSFKA----HNADVNVISWNRLASCLLASGSDDGTFS 346 (358)
Q Consensus 308 ~~~~~~~~~~~----h~~~V~~i~~~p~~~~~lasgs~Dg~i~ 346 (358)
.+.. -..+.. -...+..+.|.+.+ .+++.| .+|.|.
T Consensus 244 ~G~s-W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G-~~G~v~ 283 (334)
T PRK13684 244 DLES-WSKPIIPEITNGYGYLDLAYRTPG-EIWAGG-GNGTLL 283 (334)
T ss_pred CCCc-cccccCCccccccceeeEEEcCCC-CEEEEc-CCCeEE
Confidence 2211 111111 12347788898877 666554 456443
No 483
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.60 E-value=3.6e+02 Score=27.94 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=28.5
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPAS 261 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~ 261 (358)
..+..+.....++-++.|+.+. .|+.-..+|++++|++..
T Consensus 74 ~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 74 QLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred cchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecch
Confidence 3444333333477899999877 477778899999999853
No 484
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=40.51 E-value=4.6e+02 Score=27.52 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=45.5
Q ss_pred CcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe------------eEEE------ecCCCCeEEEEEeCCCCcEEEE
Q 018322 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA------------LTSF------KAHNADVNVISWNRLASCLLAS 338 (358)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~------------~~~~------~~h~~~V~~i~~~p~~~~~las 338 (358)
..|.+|+-...+. +++..-.||+|.++|..+-+.. +.++ ..+-..+-.++|+|.+ ..++.
T Consensus 260 ~~V~si~~~~~~~-~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~-c~~v~ 337 (753)
T PF11635_consen 260 KRVVSITSPELDI-VVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM-CSLVQ 337 (753)
T ss_pred CeEEEEEecccCc-EEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc-ceEEE
Confidence 4567777666666 8999999999999998763211 1111 0011134457899999 78888
Q ss_pred EeCCCCEE
Q 018322 339 GSDDGTFS 346 (358)
Q Consensus 339 gs~Dg~i~ 346 (358)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888855
No 485
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=39.10 E-value=69 Score=17.64 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=19.0
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
.|.+|+..+ .+++.+.+-+.++||.
T Consensus 3 ~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC---CEEEEEeCCCeEEecC
Confidence 467777665 6788888889999873
No 486
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=38.73 E-value=3.6e+02 Score=26.81 Aligned_cols=61 Identities=16% Similarity=0.106 Sum_probs=34.8
Q ss_pred EEEEEECCCcEEEEECCCCCCeeEEEec--CC--CCeEE-EEEeCCCCcEEEEEe------CCCCEEEEeCCCCCC
Q 018322 291 VFASCSVDGHIAIWDTRVGKSALTSFKA--HN--ADVNV-ISWNRLASCLLASGS------DDGTFSIHDLRLLKV 355 (358)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~~~~~~~--h~--~~V~~-i~~~p~~~~~lasgs------~Dg~i~iwDlr~~~~ 355 (358)
.++.++.|+.|.-.|.++++ .+..... +. ..+.+ .... ++ . |+.+. .+|.|.-+|+++++.
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk-~~W~~~~~~~~~~~~~tssP~v~-~g-~-Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGK-VVWSKKNGDYKAGYTITAAPLVV-KG-K-VITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred EEEEEcCCCEEEEEECCCCC-EEeecccccccccccccCCcEEE-CC-E-EEEeecccccCCCcEEEEEECCCCce
Confidence 56677889999999999864 4444321 11 11111 1111 23 3 34432 268899999988764
No 487
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=38.19 E-value=3.8e+02 Score=25.87 Aligned_cols=60 Identities=10% Similarity=-0.004 Sum_probs=40.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEE
Q 018322 178 PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLW 257 (358)
Q Consensus 178 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lw 257 (358)
..+++.-+.||.+.+|+-.... ....+.+ .--...|.+++... .|++++.+..+..|
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~---------------------f~~~lp~-~llPgPl~Y~~~tD-sfvt~sss~~l~~Y 201 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFA---------------------FSRFLPD-FLLPGPLCYCPRTD-SFVTASSSWTLECY 201 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEE---------------------EEEEcCC-CCCCcCeEEeecCC-EEEEecCceeEEEe
Confidence 4788889999999999977621 1111211 11122567777776 88888888888888
Q ss_pred ecC
Q 018322 258 EPA 260 (358)
Q Consensus 258 d~~ 260 (358)
...
T Consensus 202 ky~ 204 (418)
T PF14727_consen 202 KYQ 204 (418)
T ss_pred cHH
Confidence 653
No 488
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=37.62 E-value=3.2e+02 Score=24.88 Aligned_cols=151 Identities=12% Similarity=-0.039 Sum_probs=0.0
Q ss_pred CCcEEEEEeCC-----CcEEEEeCCCCccccccccccccCCCCCCCCCCCc----EEEcCCCCCeEEEEeCCCCCCeEEE
Q 018322 177 NPHICASWADT-----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL----VKFGGHKDEGYAIDWNPITTGRLVT 247 (358)
Q Consensus 177 ~~~~lat~s~d-----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~v~~l~~s~~~~~~l~s 247 (358)
+..+++.|+.+ ..+..||+.. ..- ..+..-..+....+-.-.+..+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~----------------------~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~ 129 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDE----------------------SKEELICETIGNLPFTFENGSACYKDGTLYVG 129 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcC----------------------CceeeeeeEcCCCCcCccCceEEEECCEEEEE
Q ss_pred EeC-----CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC----CcEEEEECCCCCCeeEEE--
Q 018322 248 GDC-----NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD----GHIAIWDTRVGKSALTSF-- 316 (358)
Q Consensus 248 gs~-----dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D----g~I~iwD~r~~~~~~~~~-- 316 (358)
|+. ...+..||+.+ ..|. ...-..........+....+. +++.|+.+ ..+.+||+.+.......-
T Consensus 130 GG~~~~~~~~~v~~yd~~~-~~W~--~~~~~p~~~r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~ 205 (323)
T TIGR03548 130 GGNRNGKPSNKSYLFNLET-QEWF--ELPDFPGEPRVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPKKNQWQKVADPT 205 (323)
T ss_pred eCcCCCccCceEEEEcCCC-CCee--ECCCCCCCCCCcceEEEECCE-EEEEcCCCCccccceEEEecCCCeeEECCCCC
Q ss_pred ---ecCCCCeEEEEEeCCCCcEEEEEeCC-------------------------------------CCEEEEeCCCCC
Q 018322 317 ---KAHNADVNVISWNRLASCLLASGSDD-------------------------------------GTFSIHDLRLLK 354 (358)
Q Consensus 317 ---~~h~~~V~~i~~~p~~~~~lasgs~D-------------------------------------g~i~iwDlr~~~ 354 (358)
......-.+.....++ .+++.|+.+ ..|.+||+.+.+
T Consensus 206 ~~~~p~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 282 (323)
T TIGR03548 206 TDSEPISLLGAASIKINES-LLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGK 282 (323)
T ss_pred CCCCceeccceeEEEECCC-EEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCe
No 489
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=36.78 E-value=2e+02 Score=30.08 Aligned_cols=113 Identities=14% Similarity=0.146 Sum_probs=63.0
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCC-CccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP-NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
.+.++.+++. -+..|.-||++-.+--...+.|-... ..+..-..+|...++.. -+.-++.+|.|.++...+.
T Consensus 583 ~v~~l~~ss~---Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~lPvrsla~~e----d~~was~gG~V~vi~~tt~ 655 (925)
T KOG3522|consen 583 SVKLLLFSSG---SLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSLPVRSLAFQE----DFVWASEGGCVHVIPSTTF 655 (925)
T ss_pred hhhhhhcccc---ccccCccCCccccccCCCCCCCCCCCccccccCCccccchhhhh----ceeeeecCCceEEEechhc
Confidence 4556666653 45566667776665433322222111 11122345777777653 2556777899999987662
Q ss_pred CCeeEEE---ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 310 KSALTSF---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 310 ~~~~~~~---~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
...... ..|...|+++....++ -+++-.+.| .+++++..++
T Consensus 656 -~~~~~leahqee~~~Vthm~~~~~g-VwvafasG~-~~rlfhtetl 699 (925)
T KOG3522|consen 656 -IRSWDLEAHQEEAHSVTHMLYLDNG-VWVAFASGD-EERLFHTETL 699 (925)
T ss_pred -cccchhHHHHhhcceEEEEEeeCCc-eEEEEcCCC-EEEEeccccc
Confidence 222222 3456678999888777 555555433 4555554443
No 490
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=36.69 E-value=56 Score=18.05 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=16.8
Q ss_pred EEEEEeCCCCEEEEeCCCCCC
Q 018322 335 LLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 335 ~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.++.++.+|.+..+|.++++.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcE
Confidence 577778889999999887654
No 491
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=35.75 E-value=3.2e+02 Score=24.36 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=44.3
Q ss_pred CCCcEEEEEE------CCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEE---EEeCCCCcEEEEEeCCCCE
Q 018322 275 HSASVEDLQW------SPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVI---SWNRLASCLLASGSDDGTF 345 (358)
Q Consensus 275 h~~~V~~v~~------sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i---~~~p~~~~~lasgs~Dg~i 345 (358)
+...|+|++- ..+....++.|...|.|.|.|...- ..+..+.--.-++.-. .|.. ....|+.++.||.|
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af-~il~~~~lpsvPv~i~~~G~~de-vdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAF-TILKQVQLPSVPVFISVSGQYDE-VDYRIVVACRDGKI 252 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhh-eeEEEEecCCCceEEEEEeeeec-cceEEEEEeCCCEE
Confidence 3456676653 3345568999999999999998863 3444444333333211 2221 23567777889988
Q ss_pred EEE
Q 018322 346 SIH 348 (358)
Q Consensus 346 ~iw 348 (358)
++.
T Consensus 253 y~i 255 (257)
T PF14779_consen 253 YTI 255 (257)
T ss_pred EEE
Confidence 763
No 492
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=35.15 E-value=3e+02 Score=23.88 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=18.0
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEe
Q 018322 318 AHNADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs 340 (358)
.|..-.|.|++.|++.++++||-
T Consensus 226 ~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 226 SNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cccccccceeecCcCCeEEEecC
Confidence 34556799999999878888873
No 493
>PLN02153 epithiospecifier protein
Probab=34.70 E-value=3.7e+02 Score=24.72 Aligned_cols=19 Identities=5% Similarity=-0.010 Sum_probs=12.0
Q ss_pred cEEEEEeCC-----CcEEEEeCCC
Q 018322 179 HICASWADT-----GHVQVWDLRS 197 (358)
Q Consensus 179 ~~lat~s~d-----g~V~iwd~~~ 197 (358)
.+++.|+.+ ..+.+||+..
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCC
Confidence 577777753 2466777654
No 494
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=33.35 E-value=4e+02 Score=24.79 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=39.9
Q ss_pred CeEEEEeCCCcEEEEecCCCC-CcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDA-TWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
+.+..+..+|.|.-.|..+.. .|...... ....+..-.+..+|. +..++.+|.+..+|.+++ ..+.......
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G-~~~W~~~~~~ 141 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGK--IYVGSWDGKLYALDASTG-TLVWSRNVGG 141 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCe--EEEecccceEEEEECCCC-cEEEEEecCC
Confidence 366666778888877877654 24311111 011111111222554 777888888888898765 4555554444
No 495
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=32.80 E-value=4.5e+02 Score=25.14 Aligned_cols=107 Identities=11% Similarity=0.274 Sum_probs=56.0
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEE-EEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIY-LWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~-lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
..+.+.-++++. +++.|. .|.+. -||--. ..|.. .. ..-...+.++.|.+++. +++ ++..|.+..- ...+
T Consensus 240 sf~~v~~~~dG~-~~~vg~-~G~~~~s~d~G~-~~W~~--~~-~~~~~~l~~v~~~~dg~-l~l-~g~~G~l~~S-~d~G 310 (398)
T PLN00033 240 TFSTVNRSPDGD-YVAVSS-RGNFYLTWEPGQ-PYWQP--HN-RASARRIQNMGWRADGG-LWL-LTRGGGLYVS-KGTG 310 (398)
T ss_pred ceeeEEEcCCCC-EEEEEC-CccEEEecCCCC-cceEE--ec-CCCccceeeeeEcCCCC-EEE-EeCCceEEEe-cCCC
Confidence 355666777765 555555 55443 344211 11221 11 12245688999999887 554 4456665442 2222
Q ss_pred CC----eeEEEec--CCCCeEEEEEeCCCCcEEEEEeCCCCEEEE
Q 018322 310 KS----ALTSFKA--HNADVNVISWNRLASCLLASGSDDGTFSIH 348 (358)
Q Consensus 310 ~~----~~~~~~~--h~~~V~~i~~~p~~~~~lasgs~Dg~i~iw 348 (358)
.. ....... -...+..+.|.+++ .++++| ..|.+...
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~-~~~a~G-~~G~v~~s 353 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKK-EAWAAG-GSGILLRS 353 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCC-cEEEEE-CCCcEEEe
Confidence 11 1122211 22358889998877 666665 55666554
No 496
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=31.74 E-value=68 Score=18.93 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=14.6
Q ss_pred CeEEEEeCCCcEEEEecC
Q 018322 243 GRLVTGDCNSCIYLWEPA 260 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~ 260 (358)
+.++.++.+|.++.+|..
T Consensus 22 g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 22 GRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp SEEEEE-TTSEEEEEETT
T ss_pred CEEEEEcCCCEEEEEeCC
Confidence 388899999999999875
No 497
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=31.70 E-value=4.6e+02 Score=24.95 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=38.9
Q ss_pred CCcEEEEEECCCCCCEEEEEECC---C-cEEEEECCCCCCeeEEEecCCC--CeEEEEEeCCCCcEEEEEe----CCCCE
Q 018322 276 SASVEDLQWSPTEPDVFASCSVD---G-HIAIWDTRVGKSALTSFKAHNA--DVNVISWNRLASCLLASGS----DDGTF 345 (358)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~D---g-~I~iwD~r~~~~~~~~~~~h~~--~V~~i~~~p~~~~~lasgs----~Dg~i 345 (358)
+.-+.-++|+|..+++|+.|... . .-|||=+++...-+..+..|.. .+..=-|.|+|..+..-+. .+..|
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence 45567789999999889988763 2 2477877664333333333322 2333357888855544332 23355
Q ss_pred EEEeCCCCC
Q 018322 346 SIHDLRLLK 354 (358)
Q Consensus 346 ~iwDlr~~~ 354 (358)
.-+|+.+++
T Consensus 267 ~~~d~~t~~ 275 (386)
T PF14583_consen 267 AGYDPDTGE 275 (386)
T ss_dssp EEE-TTT--
T ss_pred EeeCCCCCC
Confidence 566666554
No 498
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=31.51 E-value=1.3e+02 Score=31.10 Aligned_cols=30 Identities=20% Similarity=0.146 Sum_probs=25.4
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCC
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPAS 261 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~ 261 (358)
-++++.-+|.+. -+++++.||.|++|+...
T Consensus 16 ~~~aiqshp~~~-s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQ-SFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred eeeeeeecCCCc-eEEEEecCCcEEEEeecc
Confidence 456788889887 899999999999998754
No 499
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=30.64 E-value=93 Score=22.52 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=26.3
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRS 197 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~ 197 (358)
-..-|.|.++|++..+.++....+.|++|....
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 356688999999877777778889999998653
No 500
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=30.42 E-value=91 Score=18.75 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=18.9
Q ss_pred EEecCCCceeEEEEcCCCCcEEEE
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICAS 183 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat 183 (358)
..+.|.|.+++++...+| .++.|
T Consensus 15 v~I~H~g~~Y~LR~Tr~g-KLILT 37 (38)
T PF10636_consen 15 VRIEHGGQIYRLRITRQG-KLILT 37 (38)
T ss_dssp EEEEETTEEEEEEEETTT-EEEEE
T ss_pred EEEEeCCeEEEeeEccCC-cEEEc
Confidence 356799999999999988 67665
Done!