BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018323
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 515 bits (1327), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/346 (71%), Positives = 284/346 (82%)
Query: 9 KSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKRL 68
K++A FI YA+CAADEAL DA+WLP+++ +KERTGV D V+AAQ+ICEKRL
Sbjct: 83 KAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGSICDIVEAAQLICEKRL 142
Query: 69 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 128
RRLSPFFIP+IL+NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA RMIQFGD+DVMV
Sbjct: 143 RRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMV 202
Query: 129 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 188
AGGTESSIDALS+AGF +SRAL+TK+N +PQEASRPFDC RDGF H
Sbjct: 203 AGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEH 262
Query: 189 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 248
AK+RGAKIYAE+ GYGMSGDAHHITQP DGKGA+LAMTRAL+QSGL +Q+DYVNAHAT
Sbjct: 263 AKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHAT 322
Query: 249 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP 308
STP+GD VEA AI+TVFS+HATSG+LAFSSTK VEAIF++LAIHHGVAP
Sbjct: 323 STPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAP 382
Query: 309 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLF 354
+TLN+ PDPIF+ FMPLT SK M + A+SNSFGFGGTNASLLF
Sbjct: 383 MTLNVKNPDPIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLF 428
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 310 bits (794), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 164/350 (46%), Positives = 214/350 (61%), Gaps = 6/350 (1%)
Query: 8 LKSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKR 67
L+ + RF+ YAL AA AL DA P D ER G +++ E+
Sbjct: 65 LRRLDRFVQYALIAAQLALEDAGLKPEDL-DPERVGTLVGTGIGGMETWEAQSRVFLERG 123
Query: 68 LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVM 127
R+SPFFIP ++ NMAS H++M+YGF GP+ VTACATGA ++G A RMIQ G++D++
Sbjct: 124 PNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQLGEADLV 183
Query: 128 VAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXX 187
+AGGTE++I +++ F RAL+T+ N P++ASRPF RDGF
Sbjct: 184 LAGGTEAAITPMAIGAFAVMRALSTR-NEEPEKASRPFTLSRDGFVMGEGAGVLVLEAYE 242
Query: 188 HAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHA 247
HAKKRGA+IYAE+ G+G S DAHHIT+PH +GKGA LAM RALK +G+ QV Y+NAH
Sbjct: 243 HAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHG 302
Query: 248 TSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVA 307
TSTP+GD E AI+ VF DHA L SSTK VEAI V A++HGV
Sbjct: 303 TSTPVGDRAEVLAIKRVFGDHAK--RLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVI 360
Query: 308 PLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 357
P T+NL PDP + +F+P ++ + ALSNSF FGG NA L F +
Sbjct: 361 PPTINLEDPDPELDLDFVP--EPREAKVDYALSNSFAFGGHNAVLAFKRV 408
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 296 bits (758), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/348 (47%), Positives = 214/348 (61%), Gaps = 4/348 (1%)
Query: 9 KSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKRL 68
+ + FI YA+ AAD+AL DA W P + + RTGV V+A + +K
Sbjct: 82 RKVDPFIVYAVGAADQALDDAGWHPENDEDQVRTGVLIGSGIGGIEGIVEAGYTLRDKGP 141
Query: 69 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 128
RR+SPFFIP LIN+ASGHVS+K+ +GPNH+ VTACATG H+IGDAAR+I FGD+DVMV
Sbjct: 142 RRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHAIGDAARLIAFGDADVMV 201
Query: 129 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 188
AGGTES + +S+AGF +AL+T+ N P ASRP+D RDGF H
Sbjct: 202 AGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDGFVMGEGAGIVVLEELEH 261
Query: 189 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 248
A RGAKIYAEV GYGMSGDA HIT P G+GA M ALK++G+ ++DY+NAH T
Sbjct: 262 ALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAGIVPDEIDYINAHGT 321
Query: 249 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP 308
ST + DT+E A+ V + A ++ SSTK EA+F+ LAI +AP
Sbjct: 322 ST-MADTIELGAVERVVGEAAA--KISMSSTKSSIGHLLGAAGAAEAVFSTLAIRDNIAP 378
Query: 309 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 356
TLNL P + +P ++ I ALSNSFGFGGTNASL+ +
Sbjct: 379 ATLNLDNPAAQTRIDLVP-HKPRERKIDVALSNSFGFGGTNASLVLRR 425
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/347 (45%), Positives = 210/347 (60%), Gaps = 6/347 (1%)
Query: 8 LKSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKR 67
+KS++ A+ AA+ A+ D+ W P + + TGV + A K
Sbjct: 91 IKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMIPLEVVSETALNFQTKG 150
Query: 68 LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVM 127
++SPFF+P+IL+NMA+G VS++Y +GPNHA TAC TGAH++GD+ R I GD+DVM
Sbjct: 151 YNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVM 210
Query: 128 VAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXX 187
VAGGT+S I LS+AGF ++RAL+T N P+ A RPF RDGF
Sbjct: 211 VAGGTDSCISPLSLAGFSRARALST--NSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYE 268
Query: 188 HAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHA 247
HA +R A+IYAEV GYG+SGDA HIT P +G+GA+ M ALK +G+Q ++ Y+NAHA
Sbjct: 269 HAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHA 328
Query: 248 TSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVA 307
TSTPLGD E AI+ +F DHA +LA SSTK VEA F LA ++
Sbjct: 329 TSTPLGDAAENKAIKHLFKDHAY--ALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKL 386
Query: 308 PLTLNLAKPDPIFNDNFMPLTAS--KDMPISAALSNSFGFGGTNASL 352
P TLNL +P F+ N++PL A K L+NSFGFGGTNA+L
Sbjct: 387 PPTLNLDCSEPEFDLNYVPLKAQEWKTEKRFIGLTNSFGFGGTNATL 433
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 285 bits (728), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 158/347 (45%), Positives = 209/347 (60%), Gaps = 6/347 (1%)
Query: 8 LKSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKR 67
+KS++ A+ AA+ A+ D+ W P + + TGV + A K
Sbjct: 97 IKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMIPLEVVSETALNFQTKG 156
Query: 68 LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVM 127
++SPFF+P+IL+NMA+G VS++Y +GPNHA TA TGAH++GD+ R I GD+DVM
Sbjct: 157 YNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTTGAHAVGDSFRFIAHGDADVM 216
Query: 128 VAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXX 187
VAGGT+S I LS+AGF ++RAL+T N P+ A RPF RDGF
Sbjct: 217 VAGGTDSCISPLSLAGFSRARALST--NSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYE 274
Query: 188 HAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHA 247
HA +R A+IYAEV GYG+SGDA HIT P +G+GA+ M ALK +G+Q ++ Y+NAHA
Sbjct: 275 HAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHA 334
Query: 248 TSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVA 307
TSTPLGD E AI+ +F DHA +LA SSTK VEA F LA ++
Sbjct: 335 TSTPLGDAAENKAIKHLFKDHAY--ALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKL 392
Query: 308 PLTLNLAKPDPIFNDNFMPLTAS--KDMPISAALSNSFGFGGTNASL 352
P TLNL +P F+ N++PL A K L+NSFGFGGTNA+L
Sbjct: 393 PPTLNLDCSEPEFDLNYVPLKAQEWKTEKRFIGLTNSFGFGGTNATL 439
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 153/349 (43%), Positives = 207/349 (59%), Gaps = 3/349 (0%)
Query: 8 LKSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKR 67
L+ + RFI A+ AADEAL +A W P + Q+ERT +A ++ +
Sbjct: 96 LRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIGGFPGLAEAVRIGETRG 155
Query: 68 LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVM 127
+RRLSPF IP L N+A+G +S+K+ F+GP VTACA +IGDA RMI+ G++DV+
Sbjct: 156 VRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVV 215
Query: 128 VAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXX 187
+AGG E++ D +S+ GF +RAL+T ++ P ASRPFD RDGF
Sbjct: 216 LAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLD 275
Query: 188 HAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHA 247
HA RGA+ AE+ GYG + DA+H+T DG GA+ AM AL+ + QVDYVNAHA
Sbjct: 276 HALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHA 335
Query: 248 TSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVA 307
TSTP+GD E A++TVF A A SSTK +EA F++LA+ GV
Sbjct: 336 TSTPVGDAGEIEALKTVFGVGAGP---AISSTKSATGHLLGAAGAIEAAFSILALRDGVL 392
Query: 308 PLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 356
P TLNL PDP + + A++ +P+ ALSN FGFGG NAS+LF +
Sbjct: 393 PGTLNLEHPDPAADGLDLIGPAARHVPVEIALSNGFGFGGVNASVLFRR 441
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 281 bits (718), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 166/348 (47%), Positives = 216/348 (62%), Gaps = 4/348 (1%)
Query: 9 KSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKRL 68
+ + FI YA+ AAD+AL DA+W P + TGV V+A + +K
Sbjct: 78 RKVDAFIVYAIAAADQALADAEWFPKSDEDQICTGVLIGSGIGGIEGIVEAGYTLRDKGP 137
Query: 69 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 128
RR+SPFFIP LIN+ASG+VS+KYG +GPNH+ VTAC+TGAH+IGDAAR+I GD+DVM+
Sbjct: 138 RRISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACSTGAHAIGDAARLIALGDADVML 197
Query: 129 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 188
AGGTES I+ +S+AGF RAL+T N P+ ASRP+D RDGF H
Sbjct: 198 AGGTESPINRISLAGFSACRALSTCRNDDPERASRPYDVDRDGFVMGEGAAIVVLEELEH 257
Query: 189 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 248
AKKRGA+IYAE+ GYG+SGDA+HIT P G+GA +M ALK++ + ++DY+NAH T
Sbjct: 258 AKKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQRSMMAALKRAQVNVSELDYINAHGT 317
Query: 249 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP 308
ST + D +E A+ V +A S+ SSTK EAIF VLAI +AP
Sbjct: 318 ST-MADVIELAAVERVLGYYAPQVSM--SSTKSSIGHLLGAAGAAEAIFCVLAIRDNIAP 374
Query: 309 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 356
TLNL P + +P ++ I LSNSFGFGGTNASL+ +
Sbjct: 375 ATLNLENPSIETKIDLVP-HKPRERKIDTVLSNSFGFGGTNASLVMRR 421
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 278 bits (710), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 152/349 (43%), Positives = 206/349 (59%), Gaps = 3/349 (0%)
Query: 8 LKSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKR 67
L+ + RFI A+ AADEAL +A W P + Q+ERT +A ++ +
Sbjct: 96 LRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGIGGFPGLAEAVRIGETRG 155
Query: 68 LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVM 127
+RRLSPF IP L N+A+G +S+K+ F+GP VTA A +IGDA RMI+ G++DV+
Sbjct: 156 VRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTAXAASVQAIGDAMRMIRTGEADVV 215
Query: 128 VAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXX 187
+AGG E++ D +S+ GF +RAL+T ++ P ASRPFD RDGF
Sbjct: 216 LAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVVESLD 275
Query: 188 HAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHA 247
HA RGA+ AE+ GYG + DA+H+T DG GA+ AM AL+ + QVDYVNAHA
Sbjct: 276 HALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHA 335
Query: 248 TSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVA 307
TSTP+GD E A++TVF A A SSTK +EA F++LA+ GV
Sbjct: 336 TSTPVGDAGEIEALKTVFGVGAGP---AISSTKSATGHLLGAAGAIEAAFSILALRDGVL 392
Query: 308 PLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 356
P TLNL PDP + + A++ +P+ ALSN FGFGG NAS+LF +
Sbjct: 393 PGTLNLEHPDPAADGLDLIGPAARHVPVEIALSNGFGFGGVNASVLFRR 441
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 254 bits (649), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 146/350 (41%), Positives = 200/350 (57%), Gaps = 5/350 (1%)
Query: 9 KSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKRL 68
K + RF +A+CA+ +A++DAK + ++ E GV D ++ +K
Sbjct: 72 KRMDRFCHFAVCASQQAINDAKLVINELNADE-IGVLIGTGIGGLKVLEDQQTILLDKGP 130
Query: 69 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 128
R SPF IP ++ NMASG ++ G +GPN+ VTACA G+++IGDA R++Q G + M+
Sbjct: 131 SRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMI 190
Query: 129 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 188
GGTE++I LS AGF +RAL+ + N P ASRPFD RDGF
Sbjct: 191 CGGTEAAITPLSYAGFASARALSFR-NDDPLHASRPFDKDRDGFVMGEGSGILILEELES 249
Query: 189 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 248
A RGAKIY E+ GY M+ DA+HIT P DG+GA A+ ALK SGL+ V Y+NAH T
Sbjct: 250 ALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGT 309
Query: 249 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP 308
STP D E AI+ +HA ++A SSTK +EA+ V+AI P
Sbjct: 310 STPANDVTETRAIKQALGNHAY--NIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVP 367
Query: 309 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 358
T+NL PDP + +++P S+ + + ALSNSFGFGG N +L F K Q
Sbjct: 368 PTINLENPDPECDLDYVP-GQSRALIVDVALSNSFGFGGHNVTLAFKKYQ 416
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 252 bits (644), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 143/350 (40%), Positives = 204/350 (58%), Gaps = 6/350 (1%)
Query: 9 KSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKRL 68
+ + RF YA+ AA EA+ DA+ L ++ +R GV A + + +K
Sbjct: 93 RRMDRFTQYAIVAAREAVKDAQ-LDINENTADRIGVWIGSGIGGMETFEIAHKQLMDKGP 151
Query: 69 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 128
RR+SPFF+P ++ +MA+G VS+ G +GPN A VTACATG +SIG+A +++Q GD+D M+
Sbjct: 152 RRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQRGDADAMI 211
Query: 129 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 188
GGTE+ I +++AGF SRAL+T N + A RPF GRDGF
Sbjct: 212 TGGTEAPITHMAIAGFSASRALST--NDDIETACRPFQEGRDGFVMGEGAGILVIESLES 269
Query: 189 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 248
A+ RGA IYAE+ GYG +GDA+HIT P +G+G AM A+ +G++ V Y+NAH T
Sbjct: 270 AQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGT 329
Query: 249 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP 308
STP+GD E AI+ F + A L SSTK +EAIF+ L+I
Sbjct: 330 STPVGDLNEVKAIKNTFGEAAK--HLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVA 387
Query: 309 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 358
T++ PDP + + +P ++D+ I+ A+SNS GFGG NA L+F K +
Sbjct: 388 PTIHAVTPDPECDLDIVP-NEAQDLDITYAMSNSLGFGGHNAVLVFKKFE 436
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 248 bits (632), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 134/288 (46%), Positives = 186/288 (64%), Gaps = 3/288 (1%)
Query: 69 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 128
R++SPFF+P ++NM +GH+++ YG +GP+ + TAC +G H+IG AAR+I +GD+DVMV
Sbjct: 142 RKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMV 201
Query: 129 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 188
AGG E + L + GF +RAL+T+ N PQ ASRP+D RDGF H
Sbjct: 202 AGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEH 260
Query: 189 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 248
AKKRGAKIYAE+ G+GMS DA+H+T P +G GA LAM AL+ +G+++ Q+ YVNAH T
Sbjct: 261 AKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGT 320
Query: 249 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP 308
STP GD EA A++T+F + A+ + SSTK VE+I+++LA+ P
Sbjct: 321 STPAGDKAEAQAVKTIFGEAAS--RVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVP 378
Query: 309 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 356
T+NL PD + +F+P A + + L NSFGFGGTN SL+F K
Sbjct: 379 PTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKK 426
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 248 bits (632), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 134/288 (46%), Positives = 186/288 (64%), Gaps = 3/288 (1%)
Query: 69 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 128
R++SPFF+P ++NM +GH+++ YG +GP+ + TAC +G H+IG AAR+I +GD+DVMV
Sbjct: 127 RKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMV 186
Query: 129 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 188
AGG E + L + GF +RAL+T+ N PQ ASRP+D RDGF H
Sbjct: 187 AGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEH 245
Query: 189 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 248
AKKRGAKIYAE+ G+GMS DA+H+T P +G GA LAM AL+ +G+++ Q+ YVNAH T
Sbjct: 246 AKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGT 305
Query: 249 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP 308
STP GD EA A++T+F + A+ + SSTK VE+I+++LA+ P
Sbjct: 306 STPAGDKAEAQAVKTIFGEAAS--RVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVP 363
Query: 309 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 356
T+NL PD + +F+P A + + L NSFGFGGTN SL+F K
Sbjct: 364 PTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKK 411
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 133/288 (46%), Positives = 185/288 (64%), Gaps = 3/288 (1%)
Query: 69 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 128
R++SPFF+P ++NM +GH+++ YG +GP+ + TAC +G H+IG AAR+I +GD+DVMV
Sbjct: 142 RKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMV 201
Query: 129 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 188
AGG E + L + GF +RAL+T+ N PQ ASRP+D RDGF H
Sbjct: 202 AGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEH 260
Query: 189 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 248
AKKRGAKIYAE+ G+GMS DA+H+T P +G GA LAM AL+ +G+++ Q+ YVNAH T
Sbjct: 261 AKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGT 320
Query: 249 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP 308
STP GD EA A++T+F + A+ + SST VE+I+++LA+ P
Sbjct: 321 STPAGDKAEAQAVKTIFGEAAS--RVLVSSTASMTGHLLGAAGAVESIYSILALRDQAVP 378
Query: 309 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 356
T+NL PD + +F+P A + + L NSFGFGGTN SL+F K
Sbjct: 379 PTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKK 426
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 244 bits (622), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 133/288 (46%), Positives = 185/288 (64%), Gaps = 3/288 (1%)
Query: 69 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 128
R++SPFF+P ++NM +GH+++ YG +GP+ + TA +G H+IG AAR+I +GD+DVMV
Sbjct: 142 RKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARIIAYGDADVMV 201
Query: 129 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 188
AGG E + L + GF +RAL+T+ N PQ ASRP+D RDGF H
Sbjct: 202 AGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEH 260
Query: 189 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 248
AKKRGAKIYAE+ G+GMS DA+H+T P +G GA LAM AL+ +G+++ Q+ YVNAH T
Sbjct: 261 AKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGT 320
Query: 249 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP 308
STP GD EA A++T+F + A+ + SSTK VE+I+++LA+ P
Sbjct: 321 STPAGDKAEAQAVKTIFGEAAS--RVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVP 378
Query: 309 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 356
T+NL PD + +F+P A + + L NSFGFGGTN SL+F K
Sbjct: 379 PTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKK 426
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/288 (46%), Positives = 185/288 (64%), Gaps = 3/288 (1%)
Query: 69 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 128
R++SPFF+P ++NM +GH+++ YG +GP+ + TA +G H+IG AAR+I +GD+DVMV
Sbjct: 142 RKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIAYGDADVMV 201
Query: 129 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 188
AGG E + L + GF +RAL+T+ N PQ ASRP+D RDGF H
Sbjct: 202 AGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEH 260
Query: 189 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 248
AKKRGAKIYAE+ G+GMS DA+H+T P +G GA LAM AL+ +G+++ Q+ YVNAH T
Sbjct: 261 AKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGT 320
Query: 249 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP 308
STP GD EA A++T+F + A+ + SSTK VE+I+++LA+ P
Sbjct: 321 STPAGDKAEAQAVKTIFGEAAS--RVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVP 378
Query: 309 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 356
T+NL PD + +F+P A + + L NSFGFGGTN SL+F K
Sbjct: 379 PTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKK 426
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 236 bits (603), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/346 (40%), Positives = 199/346 (57%), Gaps = 6/346 (1%)
Query: 13 RFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKRLRRLS 72
RF YA+ +A+ A+ D+ L D R GV ++ + RR+S
Sbjct: 73 RFTHYAIASAEXAVQDSG-LVIDDSNANRVGVWIGSGIGGXETFETQYEIFLNRGHRRVS 131
Query: 73 PFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGT 132
PFF+P + + SG VS+++G +G N VTACAT +SIGDA ++I+ GD+D + GG
Sbjct: 132 PFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIERGDADAXITGGA 191
Query: 133 ESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKR 192
E+ I S+AGF ++AL+ N P+ A RPFD RDGF HAK R
Sbjct: 192 EAPITKXSLAGFTANKALS--LNPDPETACRPFDKDRDGFIIGEGAGIVILEEYEHAKAR 249
Query: 193 GAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPL 252
GAKIYAE+ GYG +GDA+HIT P +G+GA A A+ +GL +VDY+NAH TSTP
Sbjct: 250 GAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAIDDAGLTPDKVDYINAHGTSTPY 309
Query: 253 GDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLN 312
D E AI+TVF +HA LA SSTK +EAIFA+L I + T++
Sbjct: 310 NDEYETQAIKTVFGEHAK--KLAISSTKSXTGHTLGASGGIEAIFALLTIRDNIIAPTIH 367
Query: 313 LAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 358
L D + + +++P A ++ ++ +SNSFGFGG NA+L+F + +
Sbjct: 368 LKNQDEVCDLDYVPNEA-REANVNVVISNSFGFGGHNATLVFKRIE 412
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 130/342 (38%), Positives = 182/342 (53%), Gaps = 9/342 (2%)
Query: 17 YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKRLRRLSPFFI 76
YAL AA EA++ A L + ++R GV + D + EK +R+ P +
Sbjct: 96 YALYAAQEAVNHAN-LDVEALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTL 154
Query: 77 PRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 136
P+ L NMASG+V+M++G G + TAC++ +IGDA R I+FG DVM+ GGTE+SI
Sbjct: 155 PKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASI 214
Query: 137 DALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKI 196
++AGF AL+T + P AS PFD R+GF HA+KRGA I
Sbjct: 215 TPFAIAGFQALTALSTTED--PTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATI 272
Query: 197 YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTV 256
AEV GYG + DA+H+T PH +G+GAI A+ AL+++ + QV YVNAH TSTP +
Sbjct: 273 LAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKG 332
Query: 257 EATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLNLAKP 316
E+ AI V + SSTK VEAI + A+ H P+T ++
Sbjct: 333 ESGAIVAVLGKE-----VPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEV 387
Query: 317 DPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 358
N + + I A+SN+FGFGG NA L F + +
Sbjct: 388 SDYIEANVV-YGQGLEKEIPYAISNTFGFGGHNAVLAFKRWE 428
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 131/341 (38%), Positives = 184/341 (53%), Gaps = 11/341 (3%)
Query: 17 YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKRLRRLSPFFI 76
YAL AA EA++ A L ++R GV + D + EK +R+ P +
Sbjct: 96 YALYAAQEAVNHAN-LDVAALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTL 154
Query: 77 PRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 136
P+ L NMASG+V+M++G G + TAC++ +IGDA R I+FG DVM+ GGTE+SI
Sbjct: 155 PKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASI 214
Query: 137 DALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKI 196
++AGF AL+T + P AS PFD R+GF HA+KRGA I
Sbjct: 215 TPFAIAGFQALTALSTTED--PTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATI 272
Query: 197 YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTV 256
AEV GYG + DA+H+T PH +G+GAI A+ AL+++ + QV YVNAH TSTP +
Sbjct: 273 LAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKG 332
Query: 257 EATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLNLAKP 316
E+ AI V ++ SSTK VEAI + A+ H P+T ++
Sbjct: 333 ESGAIVAVLGK-----AVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEV 387
Query: 317 DPIFNDNFMPLTA-SKDMPISAALSNSFGFGGTNASLLFTK 356
N + +K++P A+SN+FGFGG NA L F +
Sbjct: 388 SDYIEANVVYGQGLAKEIPY--AISNTFGFGGHNAVLAFKR 426
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/343 (37%), Positives = 183/343 (53%), Gaps = 11/343 (3%)
Query: 17 YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKRLRRLSPFFI 76
YAL AA EA++ A L + ++R GV + D + EK +R+ P +
Sbjct: 97 YALYAAQEAVNHAN-LDVEALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTL 155
Query: 77 PRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 136
P+ L NMASG+V+M++G G + TAC++ +IGDA R I+FG DVM+ GGTE+SI
Sbjct: 156 PKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASI 215
Query: 137 DALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKI 196
++AGF AL+T + P AS PFD R+GF HA+KRGA I
Sbjct: 216 TPFAIAGFQALTALSTTED--PTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATI 273
Query: 197 YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTV 256
AEV GYG + DA+H+T PH +G+GAI A+ AL+++ + QV YVNA TSTP +
Sbjct: 274 LAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAAGTSTPANEKG 333
Query: 257 EATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLNLAKP 316
E+ AI V + SSTK VEAI + A+ H P+T ++
Sbjct: 334 ESGAIVAVLGKE-----VPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEV 388
Query: 317 DPIFNDNFMPLTA-SKDMPISAALSNSFGFGGTNASLLFTKCQ 358
N + K++P A+SN+FGFGG NA L F + +
Sbjct: 389 SDYIEANVVYAQGLEKEIPY--AISNTFGFGGHNAVLAFKRWE 429
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 182/348 (52%), Gaps = 13/348 (3%)
Query: 13 RFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKRLRRLS 72
R A+ A D+A+ DA L ++ ERTG+ VD+A + EK +R+
Sbjct: 91 RGTAWNHIAMDQAIADAG-LTEEEVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVG 149
Query: 73 PFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGT 132
PF +P+ + + AS ++ + +G N++ +ACAT H IG+A MIQ+G D M AGG
Sbjct: 150 PFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGC 209
Query: 133 ESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKR 192
E LS+ F A+++KYN TP ASR +D RDGF A R
Sbjct: 210 EDLDWTLSVL-FDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALAR 268
Query: 193 GAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPL 252
GAKIY E+ GYG + D + + P G+GAI M AL + ++DY+N HATSTP
Sbjct: 269 GAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALSTV---TSKIDYINPHATSTPA 323
Query: 253 GDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLN 312
GD E AIR +F +A +TK EAI+++L + + + +
Sbjct: 324 GDAPEIEAIRQIFGAGDVCPPIA--ATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAH 381
Query: 313 LAKPDPIFNDNFMPLTASK--DMPISAALSNSFGFGGTNASLLFTKCQ 358
+ + DP F D MP+ + ++ ++ LSNSFGFGGTNA+L+F + Q
Sbjct: 382 IEELDPAFAD--MPIVRKRIDNVQLNTVLSNSFGFGGTNATLVFQRYQ 427
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 182/348 (52%), Gaps = 13/348 (3%)
Query: 13 RFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKRLRRLS 72
R A+ A D+A+ DA L ++ ERTG+ VD+A + EK +R+
Sbjct: 74 RGTAWNHIAMDQAIADAG-LTEEEVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVG 132
Query: 73 PFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGT 132
PF +P+ + + AS ++ + +G N++ +ACAT H IG+A MIQ+G D M AGG
Sbjct: 133 PFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGC 192
Query: 133 ESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKR 192
E LS+ F A+++KYN TP ASR +D RDGF A R
Sbjct: 193 EDLDWTLSVL-FDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALAR 251
Query: 193 GAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPL 252
GAKIY E+ GYG + D + + P G+GAI M AL + ++DY+N HATSTP
Sbjct: 252 GAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALSTV---TSKIDYINPHATSTPA 306
Query: 253 GDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLN 312
GD E AIR +F +A +TK EAI+++L + + + +
Sbjct: 307 GDAPEIEAIRQIFGAGDVCPPIA--ATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAH 364
Query: 313 LAKPDPIFNDNFMPLTASK--DMPISAALSNSFGFGGTNASLLFTKCQ 358
+ + DP F D MP+ + ++ ++ LSNSFGFGGTNA+L+F + Q
Sbjct: 365 IEELDPAFAD--MPIVRKRIDNVQLNTVLSNSFGFGGTNATLVFQRYQ 410
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/363 (33%), Positives = 183/363 (50%), Gaps = 16/363 (4%)
Query: 1 MRTRGLILKSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDT 56
+ T GLI + + RF++ YA + ++A+ DA P R G+
Sbjct: 54 LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQ 113
Query: 57 VDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 115
V A + R L+ + P+ + + + + S ++ + G N++ +ACAT AH IG+A
Sbjct: 114 VFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNA 173
Query: 116 ARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXX 175
IQ G D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 174 VEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIA 232
Query: 176 XXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 235
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+
Sbjct: 233 GGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GV 288
Query: 236 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEA 295
+ +DY+N+H TSTP+GD E AIR VF D S A S+TK EA
Sbjct: 289 DT-PIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEA 343
Query: 296 IFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 355
I+++L + HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+
Sbjct: 344 IYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMR 402
Query: 356 KCQ 358
K +
Sbjct: 403 KLK 405
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 154/288 (53%), Gaps = 7/288 (2%)
Query: 69 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 128
R++SP + I+ N A+ + ++ G + V+AC++G+ +I A R I GD+DV V
Sbjct: 135 RKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAV 194
Query: 129 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 188
GG E I+AL +A F RA++T+ N P+ ASRPFD RDGF H
Sbjct: 195 CGGVEGPIEALPIAAFSMMRAMSTR-NDEPERASRPFDKDRDGFVFGEAGALMLIETEEH 253
Query: 189 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 248
AK RGAK A + G G++ DA H+ P DG A AMTR+L+ +GL +D+VNAH T
Sbjct: 254 AKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGT 313
Query: 249 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP 308
+TP+GD EA AIR D A A + K +E++ VL + GV P
Sbjct: 314 ATPIGDAAEANAIRVAGCDQA-----AVYAPKSALGHSIGAVGALESVLTVLTLRDGVIP 368
Query: 309 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 356
TLN PDP + + + + A++NSFGFGG N +L F +
Sbjct: 369 PTLNYETPDPEIDLDVV-AGEPRYGDYRYAVNNSFGFGGHNVALAFGR 415
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/363 (33%), Positives = 183/363 (50%), Gaps = 16/363 (4%)
Query: 1 MRTRGLILKSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDT 56
+ T GLI + + RF++ YA + ++A+ DA P R G+
Sbjct: 54 LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQ 113
Query: 57 VDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 115
V A + R L+ + P+ + + + + S ++ + G N++ +ACAT AH IG+A
Sbjct: 114 VFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNA 173
Query: 116 ARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXX 175
IQ G D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 174 VEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIA 232
Query: 176 XXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 235
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+
Sbjct: 233 GGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GV 288
Query: 236 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEA 295
+ +DY+N+H TSTP+GD E AIR VF D S A S+TK EA
Sbjct: 289 DT-PIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEA 343
Query: 296 IFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 355
I+++L + HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+
Sbjct: 344 IYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMR 402
Query: 356 KCQ 358
K +
Sbjct: 403 KLK 405
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 183/363 (50%), Gaps = 16/363 (4%)
Query: 1 MRTRGLILKSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDT 56
+ T GLI + + RF++ YA + ++A+ DA P R G+
Sbjct: 54 LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQ 113
Query: 57 VDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 115
V A + R L+ + P+ + + + + S ++ + G N++ +ACAT AH IG+A
Sbjct: 114 VFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNA 173
Query: 116 ARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXX 175
IQ G D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 174 VEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIA 232
Query: 176 XXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 235
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+
Sbjct: 233 GGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GV 288
Query: 236 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEA 295
+ +DY+N+H TSTP+GD E AIR VF D S A S+T+ EA
Sbjct: 289 DT-PIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPAISATRAMTGHSLGAAGVQEA 343
Query: 296 IFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 355
I+++L + HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+
Sbjct: 344 IYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMR 402
Query: 356 KCQ 358
K +
Sbjct: 403 KLK 405
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 182/363 (50%), Gaps = 16/363 (4%)
Query: 1 MRTRGLILKSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDT 56
+ T GLI + + RF++ YA + ++A+ DA P R G+
Sbjct: 66 LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQ 125
Query: 57 VDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 115
V A + R L+ + P+ + + + + S ++ + G N++ +ACAT AH IG+A
Sbjct: 126 VFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNA 185
Query: 116 ARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXX 175
IQ G D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 186 VEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIA 244
Query: 176 XXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 235
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+
Sbjct: 245 GGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GV 300
Query: 236 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEA 295
+ +DY+N+H TSTP+GD E AIR VF D S A S+T EA
Sbjct: 301 DT-PIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPAISATAAMTGHSLGAAGVQEA 355
Query: 296 IFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 355
I+++L + HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+
Sbjct: 356 IYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMR 414
Query: 356 KCQ 358
K +
Sbjct: 415 KLK 417
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 181 bits (458), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 182/363 (50%), Gaps = 16/363 (4%)
Query: 1 MRTRGLILKSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDT 56
+ T GLI + + RF++ YA + ++A+ DA P R G+
Sbjct: 66 LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQ 125
Query: 57 VDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 115
V A + R L+ + P+ + + + + S ++ + G N++ +ACAT AH IG+A
Sbjct: 126 VFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNA 185
Query: 116 ARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXX 175
IQ G D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 186 VEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIA 244
Query: 176 XXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 235
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+
Sbjct: 245 GGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GV 300
Query: 236 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEA 295
+ +DY+N+ TSTP+GD E AIR VF D S A S+TK EA
Sbjct: 301 DT-PIDYLNSQGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEA 355
Query: 296 IFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 355
I+++L + HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+
Sbjct: 356 IYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMR 414
Query: 356 KCQ 358
K +
Sbjct: 415 KLK 417
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 181 bits (458), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 182/363 (50%), Gaps = 16/363 (4%)
Query: 1 MRTRGLILKSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDT 56
+ T GLI + + RF++ YA + ++A+ DA P R G+
Sbjct: 66 LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQ 125
Query: 57 VDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 115
V A + R L+ + P+ + + + + S ++ + G N++ +ACAT AH IG+A
Sbjct: 126 VFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNA 185
Query: 116 ARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXX 175
IQ G D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 186 VEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIA 244
Query: 176 XXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 235
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+
Sbjct: 245 GGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GV 300
Query: 236 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEA 295
+ +DY+N+ TSTP+GD E AIR VF D S A S+TK EA
Sbjct: 301 DT-PIDYLNSEGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEA 355
Query: 296 IFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 355
I+++L + HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+
Sbjct: 356 IYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMR 414
Query: 356 KCQ 358
K +
Sbjct: 415 KLK 417
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/288 (37%), Positives = 153/288 (53%), Gaps = 7/288 (2%)
Query: 69 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 128
R++SP + I+ N A+ + ++ G + V+A ++G+ +I A R I GD+DV V
Sbjct: 135 RKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSAQSSGSEAIAHAWRQIVMGDADVAV 194
Query: 129 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 188
GG E I+AL +A F RA++T+ N P+ ASRPFD RDGF H
Sbjct: 195 CGGVEGPIEALPIAAFSMMRAMSTR-NDEPERASRPFDKDRDGFVFGEAGALMLIETEEH 253
Query: 189 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 248
AK RGAK A + G G++ DA H+ P DG A AMTR+L+ +GL +D+VNAH T
Sbjct: 254 AKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGT 313
Query: 249 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP 308
+TP+GD EA AIR D A A + K +E++ VL + GV P
Sbjct: 314 ATPIGDAAEANAIRVAGCDQA-----AVYAPKSALGHSIGAVGALESVLTVLTLRDGVIP 368
Query: 309 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 356
TLN PDP + + + + A++NSFGFGG N +L F +
Sbjct: 369 PTLNYETPDPEIDLDVV-AGEPRYGDYRYAVNNSFGFGGHNVALAFGR 415
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 182/363 (50%), Gaps = 16/363 (4%)
Query: 1 MRTRGLILKSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDT 56
+ T GLI + + RF++ YA + ++A+ DA P R G+
Sbjct: 66 LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQ 125
Query: 57 VDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 115
V A + R L+ + P+ + + + + S ++ + G N++ +A AT AH IG+A
Sbjct: 126 VFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNA 185
Query: 116 ARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXX 175
IQ G D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 186 VEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIA 244
Query: 176 XXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 235
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+
Sbjct: 245 GGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GV 300
Query: 236 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEA 295
+ +DY+N+H TSTP+GD E AIR VF D S A S+TK EA
Sbjct: 301 DT-PIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEA 355
Query: 296 IFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 355
I+++L + HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+
Sbjct: 356 IYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMR 414
Query: 356 KCQ 358
K +
Sbjct: 415 KLK 417
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 182/363 (50%), Gaps = 16/363 (4%)
Query: 1 MRTRGLILKSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDT 56
+ T GLI + + RF++ YA + ++A+ DA P R G+
Sbjct: 54 LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQ 113
Query: 57 VDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 115
V A + R L+ + P+ + + + + S ++ + G N++ +A AT AH IG+A
Sbjct: 114 VFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSAXATSAHCIGNA 173
Query: 116 ARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXX 175
IQ G D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 174 VEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIA 232
Query: 176 XXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 235
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+
Sbjct: 233 GGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GV 288
Query: 236 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEA 295
+ +DY+N+H TSTP+GD E AIR VF D S A S+TK EA
Sbjct: 289 DT-PIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEA 343
Query: 296 IFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 355
I+++L + HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+
Sbjct: 344 IYSLLMLEHGFIAPSINIEELDEQ-AAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMR 402
Query: 356 KCQ 358
K +
Sbjct: 403 KLK 405
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 182/363 (50%), Gaps = 16/363 (4%)
Query: 1 MRTRGLILKSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDT 56
+ T GLI + + RF++ YA + ++A+ DA P R G+
Sbjct: 54 LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQ 113
Query: 57 VDAAQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 115
V A + R L+ + P+ + + + + S ++ + G N++ +A AT AH IG+A
Sbjct: 114 VFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNA 173
Query: 116 ARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXX 175
IQ G D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 174 VEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIA 232
Query: 176 XXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 235
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+
Sbjct: 233 GGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GV 288
Query: 236 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEA 295
+ +DY+N+H TSTP+GD E AIR VF D S A S+TK EA
Sbjct: 289 DT-PIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEA 343
Query: 296 IFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 355
I+++L + HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+
Sbjct: 344 IYSLLMLEHGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMR 402
Query: 356 KCQ 358
K +
Sbjct: 403 KLK 405
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/363 (33%), Positives = 177/363 (48%), Gaps = 23/363 (6%)
Query: 4 RGLILKSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDA 59
+ LI + + RF + YA A EA+ D+ L Q R+G+ + V
Sbjct: 62 KDLIDRKVLRFXSDASIYAYLAXQEAIADSG-LSDSQVSNFRSGLVVGSGGGSPRNQVAG 120
Query: 60 AQMICEKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARM 118
+ R L+ + P+ + + + S ++ + +G N++ +ACAT AH IG A +
Sbjct: 121 SDAXRTPRGLKGVGPYXVTKAXASGVSACLATPFKIKGVNYSISSACATSAHCIGHALEL 180
Query: 119 IQFGDSDVMVAGGTESSIDALSMAGFCK---SRALTTKYNGTPQEASRPFDCGRDGFXXX 175
IQ G D++ AGG E L C+ AL+TKYN TP +ASR +D RDGF
Sbjct: 181 IQLGKQDIVFAGGGEE----LCWEXACEFDAXGALSTKYNDTPAKASRTYDQDRDGFVIA 236
Query: 176 XXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 235
HA RGA IYAE+ GYG + D P G+GA+ A +G+
Sbjct: 237 GGGGXVVVEELEHALARGAHIYAEIVGYGATSDGADXVAP--SGEGAVRCXQXA--XAGV 292
Query: 236 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEA 295
+ +DY N H TSTP+GD E AIR VF ++ + A SSTK EA
Sbjct: 293 DT-PIDYXNVHGTSTPVGDVKELGAIREVFGNN----TPAISSTKAXTGHSLGAAGVHEA 347
Query: 296 IFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 355
IF++L + HG ++N+ D + +T + ++ SNSFGFGGTNA+L+
Sbjct: 348 IFSLLXVEHGFIAPSINIDNLDEQAQGXNI-ITETTQRELTTVXSNSFGFGGTNATLVXR 406
Query: 356 KCQ 358
K Q
Sbjct: 407 KYQ 409
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 148/293 (50%), Gaps = 9/293 (3%)
Query: 66 KRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSD 125
+ ++ +SP + + + N A+ V ++ + V+ACA+GA +I A + I G++D
Sbjct: 148 RGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSACASGAEAIARAWQQIVLGEAD 207
Query: 126 VMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXX 185
+ GG E+ I+A+ +AGF + R + + N P A RPFD RDGF
Sbjct: 208 AAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEGGALLLIET 267
Query: 186 XXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNA 245
HAK RGA I A + G ++ D H+ P +G+ A A+TRA++ +GL +D+VNA
Sbjct: 268 EEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLAPGDIDHVNA 327
Query: 246 HATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHG 305
HAT T +GD E AI + A + K VE+I VLA+
Sbjct: 328 HATGTQVGDLAEGRAINNALGGNRP----AVYAPKSALGHSVGAVGAVESILTVLALRDQ 383
Query: 306 VAPLTLNLAKPDPIFNDNFMPLTASKDMP--ISAALSNSFGFGGTNASLLFTK 356
V P TLNL DP + + + A + P A++NSFGFGG N ++ F +
Sbjct: 384 VIPPTLNLVNLDPEID---LDVVAGEPRPGNYRYAINNSFGFGGHNVAIAFGR 433
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 145/302 (48%), Gaps = 13/302 (4%)
Query: 57 VDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAA 116
VDAA + R + + +P ++ V+ G +GP T C +G S+G+A
Sbjct: 130 VDAAWLS-----RHMFDYLVPSVM----PAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAV 180
Query: 117 RMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXX 176
R I+ G +DVM AG ++ I + +A F RA TT N P+ ASRPFD RDGF
Sbjct: 181 RAIEEGSADVMFAGAADTPITPIVVACFDAIRA-TTARNDDPEHASRPFDGTRDGFVLAE 239
Query: 177 XXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQ 236
A RGA+I+AE+ GY +A+H+T DG+ + AL +S
Sbjct: 240 GAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRTD 299
Query: 237 SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAI 296
+ +DY+NAH + T D E A + +HA + SS K +E
Sbjct: 300 ATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPV--SSIKSMVGHSLGAIGSLEIA 357
Query: 297 FAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 356
VLA+ HGV P T NL DP + +++PL A ++ + + L+ GFGG ++++
Sbjct: 358 ACVLALEHGVVPPTANLRTSDPECDLDYVPLEA-RERKLRSVLTVGSGFGGFQSAMVLRD 416
Query: 357 CQ 358
+
Sbjct: 417 AE 418
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 155/350 (44%), Gaps = 9/350 (2%)
Query: 9 KSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKRL 68
+S+ R YA+ A++ AL DA + + R GV M+ +
Sbjct: 72 RSMGRVSMYAVRASELALADAGFAGDESISDGRMGVAYGSSSGSVEPIRAFGTMLESGSM 131
Query: 69 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 128
++ +++ + + +VS+ + +G +ACA+G+ +IG A I G +M+
Sbjct: 132 TDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTSSACASGSQAIGYAYENIAMGKQTLML 191
Query: 129 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 188
AGG E + ++A F A +T+ N P RPFD RDG H
Sbjct: 192 AGGAEE-LSGPAVAVFDTLYATSTR-NDEPHLTPRPFDAKRDGLVVGEGAATLVLEEYEH 249
Query: 189 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 248
AK RGA I+AE+ G+G + D H+TQP AM AL+ + L ++ + YVNAH T
Sbjct: 250 AKARGATIHAEIVGFGCNSDGAHMTQP--TASTMARAMQLALEDAKLDANAIAYVNAHGT 307
Query: 249 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP 308
ST GD E+ A F + + SS K +EA + + +
Sbjct: 308 STDRGDVAESQATARTFGER-----MPISSLKSYVGHTLGACGALEAWWTIEMMKRNWYA 362
Query: 309 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 358
TLNL + DP ++ + +SN+F FGG N SL+F + +
Sbjct: 363 PTLNLTEVDPACAPLDYIRGEARAIDAEYVMSNNFAFGGINTSLIFRRVR 412
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 118/284 (41%), Gaps = 16/284 (5%)
Query: 83 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 142
+ASG +S G +GP+ + TAC++ ++ A ++ G+S + V GG
Sbjct: 155 VASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFV 214
Query: 143 GFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRG 202
F + RAL S+ F G DGF A++ G ++ A VRG
Sbjct: 215 DFSRQRALAADGR------SKAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRG 268
Query: 203 YGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIR 262
++ D G + +AL+ GL+ VD V AH T T LGD +EA A+
Sbjct: 269 SALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVDAVEAHGTGTALGDPIEANALL 328
Query: 263 TVFS-DHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLNLAKPDP--I 319
+ D L S K + VLA+ +G P TL++ +P P
Sbjct: 329 DTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHVEEPTPHVD 388
Query: 320 FNDNFMPLTASK------DMPISAALSNSFGFGGTNASLLFTKC 357
++ + L A + AA+S +FG GTNA ++ +
Sbjct: 389 WSSGGVALLAGNQPWRRGERTRRAAVS-AFGISGTNAHVIVEEA 431
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 20/284 (7%)
Query: 82 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM 141
++ASG V+ G +GP TAC++G ++ A ++ + + +AGG +
Sbjct: 176 SVASGRVAYCLGLEGPAXTVDTACSSGLTALHLAXESLRRDECGLALAGGVTVXSSPGAF 235
Query: 142 AGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVR 201
F L +PF DGF A++ G + A +R
Sbjct: 236 TEFRSQGGLAADGR------CKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLR 289
Query: 202 GYGMSGD--AHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEAT 259
G ++ D ++ +T P G + RAL+ +G+++ VDYV AH T T LGD +E
Sbjct: 290 GSAVNQDGASNGLTAPS--GPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVH 347
Query: 260 AIRTVF-SDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLNLAKPDP 318
A+ + + ++ L S K AVLA+ HG P TL+ +P P
Sbjct: 348 ALLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVXKAVLALRHGEXPRTLHFDEPSP 407
Query: 319 IFNDNFMPLTA--------SKDMPISAALSNSFGFGGTNASLLF 354
+ ++ + + P A +S SFG GTNA ++
Sbjct: 408 QIEWDLGAVSVVSQARSWPAGERPRRAGVS-SFGISGTNAHVIV 450
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 106/280 (37%), Gaps = 22/280 (7%)
Query: 83 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 142
M + +S + F+GP+ A TAC++ ++ +A + I G + GG + +
Sbjct: 141 MMANRLSFFFDFRGPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSV 200
Query: 143 GFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRG 202
F + L +P+ + FD +G+ A+ ++YA +
Sbjct: 201 QFLRLGML------SPEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLAR----RVYATILN 250
Query: 203 YGMSGDA---HHITQPHIDGKGAILAMTRALKQS-GLQSHQVDYVNAHATSTPLGDTVEA 258
G + D +T P D + ++ R+L QS G+ +Y+ AH T T +GD E
Sbjct: 251 AGTNTDGFKEQGVTFPSGDIQEQLI---RSLYQSAGVAPESFEYIEAHGTGTKVGDPQEL 307
Query: 259 TAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLNLAKPDP 318
I L STK +L++ HG+ L+ P+P
Sbjct: 308 NGITRALC-ATRQEPLLIGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAPNLHFHSPNP 366
Query: 319 IFNDNFMPLTASKDMPISAALS----NSFGFGGTNASLLF 354
D P+ NSFGFGG+N ++
Sbjct: 367 EIPALLDGRLQVVDQPLPVRGGNVGINSFGFGGSNVHIIL 406
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 108/280 (38%), Gaps = 22/280 (7%)
Query: 83 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 142
M + +S + F+GP+ TAC++ ++ A + I+ G+ V GG + S
Sbjct: 139 MMANRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSL 198
Query: 143 GFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRG 202
F K L+ +GT R FD G+ A+ ++YA +
Sbjct: 199 QFMKLGMLSQ--DGT----CRSFDAEGTGYCRAEAVVAVLLTKKSLAR----RVYATILN 248
Query: 203 YGMSGDA---HHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEAT 259
G + D +T P D + ++ A +G ++Y+ AH T T +GD E
Sbjct: 249 AGTNTDGSKEQGVTFPSGDVQEQLIRSLYA--PAGPDPESLEYIEAHGTGTKVGDPQELN 306
Query: 260 AIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLNLAKPD-- 317
I L STK I +L++ HGV L+ P+
Sbjct: 307 GIVNALC-ATRREPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTPNPE 365
Query: 318 -PIFNDNFMPLTASKDMPISAALS--NSFGFGGTNASLLF 354
P D + + + +PI NSFGFGG+N ++
Sbjct: 366 IPALQDGRLQVV-DRPLPIRGGNVGINSFGFGGSNVHVIL 404
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 10/250 (4%)
Query: 18 ALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKRLRRLSPFFIP 77
AL AAD AL DAK P + GV T + + + + +S +
Sbjct: 83 ALTAADWALQDAKADPESLTDYD-MGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESF 141
Query: 78 RILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID 137
+ +G +S+++G +GP+ A V A G ++G A R I+ G + ++V+GG +S++D
Sbjct: 142 AWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALD 200
Query: 138 ALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGA-KI 196
S ++T + P A PFD G+ A+ RG
Sbjct: 201 PWGWVSQIASGRISTATD--PDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDA 258
Query: 197 YAEVRGYGMSGD-AHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 255
Y E+ G + D A +P G A+ AL +G VD V A P D
Sbjct: 259 YGELAGCASTFDPAPGSGRP----AGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDA 314
Query: 256 VEATAIRTVF 265
EA AI VF
Sbjct: 315 AEARAIGRVF 324
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 76/295 (25%), Positives = 114/295 (38%), Gaps = 28/295 (9%)
Query: 76 IPRILINMASGHVSMKY-GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGG--- 131
+ +L N+ + HV Y G G V ACAT A S+ + I+ G +D+++AGG
Sbjct: 2710 LQEVLPNVVAAHVMQSYVGGYGAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDD 2769
Query: 132 --TESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHA 189
E+ I MA + + K + + SR D R GF A
Sbjct: 2770 LTLEAIIGFGDMAATADTEMMRAK-GISDSKFSRANDRRRLGFLEAQGGGTILLARGDLA 2828
Query: 190 KKRGAKIYAEVRGYGMS-GDAHHITQPHIDGKGAILA--------MTRALKQSGLQSHQV 240
K G + A V GY S D H + P G GA+ A + R+L Q G+ + +
Sbjct: 2829 LKMGLPVLAVV-GYAQSFADGVHTSIP-APGLGALGAARGGRESTLARSLAQLGVGADDI 2886
Query: 241 DYVNAHATSTPLGDTVEATAIRTVFSD---HATSGSLAFSSTKXXXXXXXXXXXXVEAIF 297
++ H TST D E T + +D A L S K + +
Sbjct: 2887 AVISKHDTSTLANDPNE-TELHERIADSMGRAPGNPLFIVSQKTLTGHAKGGAAVFQMMG 2945
Query: 298 AVLAIHHGVAP--LTLNLAKPDPIFNDNFM----PLTASKDMPISAALSNSFGFG 346
+ GV P +L+ + + +F+ PL P+ A L S GFG
Sbjct: 2946 LCQILRDGVIPPNRSLDCVDDELATSGHFVWVREPLDLRGKFPLKAGLVTSLGFG 3000
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
Query: 80 LINMASGHVSMKY-GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 138
IN S V+M GP V ACAT S+ I G + + + GG + +
Sbjct: 1279 FINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEE 1338
Query: 139 LSMA-GFCKSRALTT---KYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGA 194
S G K+ + T ++ TP E SRP R+GF A K G
Sbjct: 1339 GSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGV 1398
Query: 195 KIYAEV 200
IY V
Sbjct: 1399 PIYGIV 1404
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
Query: 80 LINMASGHVSMKY-GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 138
IN S V+M GP V ACAT S+ I G + + + GG + +
Sbjct: 1279 FINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEE 1338
Query: 139 LSMA-GFCKSRALTT---KYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGA 194
S G K+ + T ++ TP E SRP R+GF A K G
Sbjct: 1339 GSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGV 1398
Query: 195 KIYAEV 200
IY V
Sbjct: 1399 PIYGIV 1404
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
Query: 80 LINMASGHVSMKY-GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 138
IN S V+M GP V ACAT S+ I G + + + GG + +
Sbjct: 1080 FINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEE 1139
Query: 139 LSMA-GFCKSRALTT---KYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGA 194
S G K+ + T ++ TP E SRP R+GF A K G
Sbjct: 1140 GSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGV 1199
Query: 195 KIYAEV 200
IY V
Sbjct: 1200 PIYGIV 1205
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 97 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTES 134
P++ C +G S+ AA+ I G++DV++AGGTE+
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTEN 120
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 188 HAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAH 246
A + G + A+++ Y +G +P + G G I A +ALK++GL + +D + A+
Sbjct: 267 KADELGIRPLAKIKSYASAG-----VEPEVMGTGPIPATRKALKKAGLSINDIDLIEAN 320
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 105 CATGAHSIGDAARMIQFGDSDVMVAGGTES 134
C +G S+ A+++I GD+D+M+ GG E+
Sbjct: 93 CGSGLRSVSMASQLIALGDADIMLVGGAEN 122
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 105 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 160
CA+G +I A++ + G DVMVAGG ES +S + +R +T Y G E
Sbjct: 94 CASGMKAIMMASQSLMCGHQDVMVAGGMES----MSNVPYVMNRG-STPYGGVKLE 144
>pdb|1P6G|K Chain K, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P87|K Chain K, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AVY|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AW7|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|2I2P|K Chain K, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2U|K Chain K, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QOU|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The First 70s Ribosome,
With Spectinomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|2QOW|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The Second 70s
Ribosome, With Spectinomycin Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2QOY|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
First 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QP0|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QAL|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAN|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QB9|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBB|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBD|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
First 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBF|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBH|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The First 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBJ|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The Second 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4K|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The First 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4M|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The Second 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2VHO|K Chain K, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 3 Of 4)
pdb|2VHP|K Chain K, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 4 Of 4)
pdb|3DF1|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3DF3|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3J00|K Chain K, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|4ADV|K Chain K, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
pdb|3J0U|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0V|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0X|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J0Z|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J10|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J13|M Chain M, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 3 Of The Six
Classes)
Length = 128
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 93 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAG---GTESSIDALSMAGF 144
GF+G + A A DA + + +VMV G G ES+I AL+ AGF
Sbjct: 50 GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGF 104
>pdb|1VS5|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS7|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|3E1A|C Chain C, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Pre- Accommodation State
pdb|3E1C|C Chain C, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Post-Accommodation State
pdb|3I1M|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1O|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Q|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1S|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Z|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I21|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KC4|K Chain K, Ribosome-Secy Complex. This Entry 3kc4 Contains 30s
Ribosomal Subnit. The 50s Ribosomal Subunit Can Be Found
In Pdb Entry 3kcr
pdb|3OR9|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The First
70s Ribosome.
pdb|3ORA|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3IZV|O Chain O, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|O Chain O, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
pdb|3SFS|K Chain K, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOQ|K Chain K, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|4GAQ|K Chain K, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAS|K Chain K, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 129
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 93 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAG---GTESSIDALSMAGF 144
GF+G + A A DA + + +VMV G G ES+I AL+ AGF
Sbjct: 51 GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGF 105
>pdb|3FIH|K Chain K, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IY8|K Chain K, Leishmania Tarentolae Mitonchondrial Ribosome Small
Subunit
pdb|2WWL|K Chain K, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 30s, The P-Site
Trna And The Tnac Leader Peptide (Part 1 Of 2).
pdb|3OFO|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFP|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3OFA|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The First 70s Ribosome.
pdb|3OFB|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The Second 70s Ribosome.
pdb|3OFX|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFY|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome
pdb|3OAQ|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OAR|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|2YKR|K Chain K, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
pdb|4A2I|K Chain K, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
pdb|3J18|K Chain K, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
pdb|4GD1|K Chain K, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|4GD2|K Chain K, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
Length = 117
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 93 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAG---GTESSIDALSMAGF 144
GF+G + A A DA + + +VMV G G ES+I AL+ AGF
Sbjct: 39 GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGF 93
>pdb|2GY9|K Chain K, Structure Of The 30s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYB|K Chain K, Structure Of The 30s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 116
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 93 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAG---GTESSIDALSMAGF 144
GF+G + A A DA + + +VMV G G ES+I AL+ AGF
Sbjct: 39 GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGF 93
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 96 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGG-----TESSIDALSMAGFCKSRAL 150
GP V ACAT S+ I G + V + GG E S + +M ++
Sbjct: 1271 GPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEE 1330
Query: 151 TTKYNGTPQEASRPFDCGRDGF 172
+ P E SRP R+GF
Sbjct: 1331 FAR-GREPGEMSRPTSTTRNGF 1351
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 18/85 (21%)
Query: 67 RLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA--AVTA---------------CATGA 109
LRR P ++ +M G VS G QG + A AV A CA+G
Sbjct: 42 ELRRRYPDLDETLISDMILGVVS-PVGDQGGDIARTAVLAAGLPETTGGVQLNRFCASGL 100
Query: 110 HSIGDAARMIQFGDSDVMVAGGTES 134
++ AA+ ++ G D+++AGG ES
Sbjct: 101 EAVNTAAQKVRSGWDDLVLAGGVES 125
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 106 ATGAHSIGDAARMIQFGDSDVMVAGGTES 134
++G +I AA IQ G S+V+VAGG E+
Sbjct: 92 SSGMQAIMSAAMQIQLGVSEVVVAGGVEA 120
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 105 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 145
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 105 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 145
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 105 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 145
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 105 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 145
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 105 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 145
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 105 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 145
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 105 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 145
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 105 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 145
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 105 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 145
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 105 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 145
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 86 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 122
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 105 CATGAHSIGDAARMIQFGDSDVMVAGGTE 133
C + ++ DAAR I GD+ V + GG E
Sbjct: 91 CGSSXQALHDAARXIXTGDAQVCLVGGVE 119
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 189 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVN 244
AK G + A +R ++G P I G G + A +ALK++GL +D++
Sbjct: 259 AKDLGLEPLAVIRSMAVAG-----VDPAIMGYGPVPATQKALKRAGLNMADIDFIE 309
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 106 ATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 160
A+G +I A++ + G DVMVAGG ES +S + +R +T Y G E
Sbjct: 95 ASGMKAIMMASQSLMCGHQDVMVAGGMES----MSNVPYVMNRG-STPYGGVKLE 144
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 106 ATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 160
A+G +I A++ + G DVMVAGG ES +S + +R +T Y G E
Sbjct: 106 ASGMKAIMMASQSLMCGHQDVMVAGGMES----MSNVPYVMNRG-STPYGGVKLE 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,222,338
Number of Sequences: 62578
Number of extensions: 312282
Number of successful extensions: 800
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 78
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)