BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018324
(358 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NYE7|TM192_DANRE Transmembrane protein 192 OS=Danio rerio GN=tmem192 PE=2 SV=1
Length = 271
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 20/170 (11%)
Query: 79 VILLALTGIFQQYFVYQ--VQK----IRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLV 132
V+LL ++ F+Y VQ+ +R +GY F + K I LP I + G AA+L V
Sbjct: 99 VVLLGKVALWVVVFIYDRVVQRRHSAVRRKGYLDFYRMTKGIKSLPLLIHSAGNAAILTV 158
Query: 133 I----VWRPHISILSISTLLRII---MLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKS 185
I + ++ LS+ LL II +L+ IC + Y +V ++N PDV +
Sbjct: 159 IAPSSLLDANVKNLSVYLLLAIICLELLLTIIC----LLRYTVHVVKFNRKKPHPDVTEE 214
Query: 186 LYSPLQPSSSLEGLRYHDGGRLSD---EQMALLQYQRENLHFLSEEILRL 232
S S + + DG L D +Q L+ Y +++ LS IL L
Sbjct: 215 ERSYGCSSDAHTETGFRDGSSLEDVVEKQADLIDYLKQHNSVLSRRILTL 264
>sp|Q5U1Y0|TM192_RAT Transmembrane protein 192 OS=Rattus norvegicus GN=Tmem192 PE=2 SV=1
Length = 266
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 79 VILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWR-- 136
VIL L +F++Y Y +K+R +GY + +H+ L I + G A+LL++ +
Sbjct: 101 VILWILHLLFERYIQYHHRKVRSRGYSQIYRSTRHLKALALTIHSSGNTALLLLLCVQYS 160
Query: 137 -PHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMK 184
P + L + +L ++ L E IC+ S + +Y + ++N QPDV++
Sbjct: 161 FPEPNKLYLELILAVLAL-ELICSLSCLVLYTVKIRRFNKAKPQPDVLE 208
>sp|Q9CXT7|TM192_MOUSE Transmembrane protein 192 OS=Mus musculus GN=Tmem192 PE=1 SV=1
Length = 266
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 7/160 (4%)
Query: 79 VILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWR-- 136
+IL L +F++Y Y +K+R +GY + +H+ L I + G A+LL++ +
Sbjct: 101 LILWILHLLFERYVQYHHRKVRSRGYSQIYRSTRHLKTLALTIHSSGNTALLLLLCVQHS 160
Query: 137 -PHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVM--KSLYSPLQPS 193
P S L + +L ++ L E IC+ S + +YI + ++N PDV+ + +Y+ +
Sbjct: 161 FPEPSKLYLELILAVLAL-ELICSLSCLILYIVKIRRFNRAKPLPDVLEEEKIYAYPSNT 219
Query: 194 SSLEGLRYHDG-GRLSDEQMALLQYQRENLHFLSEEILRL 232
+S G R + ++Q ++ Y + + LS+ +L L
Sbjct: 220 ASETGFRTVSSLEEIVEKQEDIIVYLKRHNALLSKRLLEL 259
>sp|C5E2E7|MPS2_LACTC Monopolar spindle protein 2 OS=Lachancea thermotolerans (strain
ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=MPS2 PE=3 SV=1
Length = 386
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 19/115 (16%)
Query: 206 RLSDEQ-MALLQYQRENLHFLSEEILRLQECL----SKYEQSDDGSTPQVDLAHLLAARD 260
RL D Q + +Q ++ + H L EE++RL+E + SK ++ D T + ++ L +D
Sbjct: 107 RLQDSQAVDGIQDEKTSSHALQEEVMRLREQVRVLSSKNDEKDREITARDEIIADLQGKD 166
Query: 261 ----------QELRTLSAEMNQLQSELRLARSFVAEREAEVL----RVRNTNNQY 301
Q +RTL A + L+ EL + E++ E+L RV ++Y
Sbjct: 167 ASPAGSPRSLQRMRTLQARVTSLEDELSFRDEVIREKDRELLNLTKRVGEFKDKY 221
>sp|P08799|MYS2_DICDI Myosin-2 heavy chain OS=Dictyostelium discoideum GN=mhcA PE=1 SV=3
Length = 2116
Score = 35.4 bits (80), Expect = 0.60, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Query: 205 GRLSDEQMALLQYQRENLHFLSE-EILRLQ---ECLSKYEQSDDGSTPQVDLAHLLAARD 260
GRL +E +A R +E + L Q E +K +Q + + +L
Sbjct: 1965 GRLEEESIARTNSDRSRKRLEAEIDALTAQVDAEQKAKNQQIKENKKIETELKEYRKKFG 2024
Query: 261 QELRTLSAE---MNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWST 317
+ +T + E + +L+++ + A+ A+ + + L V N +++ E L+ + +
Sbjct: 2025 ESEKTKTKEFLVVEKLETDYKRAKKEAADEQQQRLTVENDLRKHLSEISLLKDAIDKLQR 2084
Query: 318 RAAKLERALEVERMSNIELQKKIS 341
K +R LE E S IE+Q+K++
Sbjct: 2085 DHDKTKRELETETASKIEMQRKMA 2108
>sp|O93308|SMC1A_XENLA Structural maintenance of chromosomes protein 1A OS=Xenopus laevis
GN=smc1a PE=1 SV=1
Length = 1232
Score = 35.4 bits (80), Expect = 0.74, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 16/153 (10%)
Query: 191 QPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV 250
Q S GL+ RL Q L Q + +L +E +L+ L+ + +P++
Sbjct: 700 QVQSQAHGLQM----RLKYSQSDLEQTKTRHLAMNMQEKSKLESELANF-------SPRI 748
Query: 251 -DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLR 309
D+ ++ +RD+E++ L +MNQ++ E + F RE V +R + V+ +
Sbjct: 749 NDIKRIIQSRDREMKDLKEKMNQVEDE--VFEEFC--REIGVRNIREFEEEKVKRQNEIA 804
Query: 310 AILGEWSTRAAKLERALEVERMSNIELQKKIST 342
E+ + +L L+ E+ E Q K+ T
Sbjct: 805 KKRLEFENQKTRLGIQLDYEKNQLKEDQGKVQT 837
>sp|Q5BQN8|CENPJ_PANTR Centromere protein J OS=Pan troglodytes GN=CENPJ PE=2 SV=1
Length = 1338
Score = 35.0 bits (79), Expect = 0.78, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 206 RLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRT 265
+ + +A L+ +RE+ + +L++ ++ +EQ +LA + + +E+R
Sbjct: 922 KAENASLAKLRIERES------ALEKLRKEIADFEQQK-----AKELARIEEFKKEEMRK 970
Query: 266 LSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERA 325
L E + AR+F ++E E ++ Q + E L+ +WS+ ++L
Sbjct: 971 LQKERKVFEKYTTAARTFPDKKERE--EIQTLKQQIADLREDLKRKETKWSSTHSRLRSQ 1028
Query: 326 LEVERMSNIELQKKI 340
+E+ N +L+++I
Sbjct: 1029 IEMLVRENTDLREEI 1043
>sp|P47460|HMW2_MYCGE Cytadherence high molecular weight protein 2 OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=hmw2 PE=3 SV=1
Length = 1805
Score = 34.3 bits (77), Expect = 1.5, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 206 RLSDEQMALLQYQRENLHFLSEEILR----LQECLSKYEQSDDGSTPQVDLAHLLAARDQ 261
R+ D++ LL+ NLHFLS E R L++ +S +E+ +T + +H +
Sbjct: 1301 RIVDDKNRLLKENERNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASH------K 1354
Query: 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAK 321
E++ E+ +L EL ++ + A+ R R EN+RL+ + +
Sbjct: 1355 EVKKKEGELQKLLVELETRKTKLNNDFAKFSRQREEF-----ENQRLKLL---------E 1400
Query: 322 LERALEVERMSNIELQKKISTRRNQH 347
L++ L+ + SN K I N +
Sbjct: 1401 LQKTLQTQTNSNNFKTKAIQEIENSY 1426
>sp|Q8VDD5|MYH9_MOUSE Myosin-9 OS=Mus musculus GN=Myh9 PE=1 SV=4
Length = 1960
Score = 34.3 bits (77), Expect = 1.6, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 11/147 (7%)
Query: 205 GRLSDEQMALLQYQRENLHFLSEEILRLQECLSKY--------EQSDDGSTPQVDL---A 253
G L++E ALLQ + ++ H + +LQE K+ E +D + QV+L
Sbjct: 1227 GELANEVKALLQGKGDSEHKRKKVEAQLQELQVKFSEGERVRTELADKVTKLQVELDSVT 1286
Query: 254 HLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILG 313
LL+ D + L+ + + L+S+L+ + + E + L + Q +E R L
Sbjct: 1287 GLLSQSDSKSSKLTKDFSALESQLQDTQELLQEENRQKLSLSTKLKQMEDEKNSFREQLE 1346
Query: 314 EWSTRAAKLERALEVERMSNIELQKKI 340
E LE+ + +++KK+
Sbjct: 1347 EEEEAKRNLEKQIATLHAQVTDMKKKM 1373
>sp|Q5RCG1|TM192_PONAB Transmembrane protein 192 OS=Pongo abelii GN=TMEM192 PE=2 SV=2
Length = 271
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 8/173 (4%)
Query: 79 VILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWR-- 136
VIL L + + Y Y KIR +GY + +H+ RL I + G +LL++ +
Sbjct: 101 VILWILHLLLECYIQYHHSKIRNRGYNLIYRSTRHLKRLALMIRSSGNTVLLLILCMQHS 160
Query: 137 -PHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSS 195
P L L+ I+ +E IC+ + +Y + ++N +PD+++ PS+
Sbjct: 161 FPEPGRLY-LDLILAILALELICSLICLLIYTVKIRRFNKAKPEPDILEEEKIYAYPSN- 218
Query: 196 LEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTP 248
+ G R +++ Q + + +L L + L SD G P
Sbjct: 219 ---ITSETGFRTISSLEEIVEKQGDTIEYLKRHNALLSKRLLALTSSDLGCQP 268
>sp|Q8IY95|TM192_HUMAN Transmembrane protein 192 OS=Homo sapiens GN=TMEM192 PE=1 SV=1
Length = 271
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 8/173 (4%)
Query: 79 VILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWR-- 136
VIL L + + Y Y KIR +GY + +H+ RL I + G +LL++ +
Sbjct: 101 VILWILHLLLECYIQYHHSKIRNRGYNLIYRSTRHLKRLALMIQSSGNTVLLLILCMQHS 160
Query: 137 -PHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSS 195
P L + + I+ +E IC+ + +Y + ++N +PD+++ PS+
Sbjct: 161 FPEPGRLYLDL-ILAILALELICSLICLLIYTVKIRRFNKAKPEPDILEEEKIYAYPSN- 218
Query: 196 LEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTP 248
+ G R +++ Q + + +L L + L SD G P
Sbjct: 219 ---ITSETGFRTISSLEEIVEKQGDTIEYLKRHNALLSKRLLALTSSDLGCQP 268
>sp|Q9HC77|CENPJ_HUMAN Centromere protein J OS=Homo sapiens GN=CENPJ PE=1 SV=2
Length = 1338
Score = 33.9 bits (76), Expect = 1.8, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 206 RLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRT 265
+ + +A L+ +RE+ + +L++ ++ +EQ +LA + + +E+R
Sbjct: 921 KAENASLAKLRIERES------ALEKLRKEIADFEQQK-----AKELARIEEFKKEEMRK 969
Query: 266 LSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERA 325
L E + AR+F ++E E ++ Q + E L+ +WS+ ++L
Sbjct: 970 LQKERKVFEKYTTAARTFPDKKERE--EIQTLKQQIADLREDLKRKETKWSSTHSRLRSQ 1027
Query: 326 LEVERMSNIELQKKI 340
+++ N +L+++I
Sbjct: 1028 IQMLVRENTDLREEI 1042
>sp|O93309|SMC3_XENLA Structural maintenance of chromosomes protein 3 OS=Xenopus laevis
GN=smc3 PE=1 SV=2
Length = 1209
Score = 33.5 bits (75), Expect = 2.5, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 28/169 (16%)
Query: 195 SLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAH 254
S+ ++ +G R D+ LL+Y E LH L EE +E L++Y++ D ++ A
Sbjct: 175 SISLMKETEGKR--DKINELLKYIEERLHTLEEE----KEELAQYQKWD-----KMRRAL 223
Query: 255 LLAARDQELRTLSAEMNQLQSELRL--------------ARSFVAEREAEVLRVRNTNNQ 300
+QEL A++++L S+ AR + E E +V +++ +
Sbjct: 224 EYTIYNQELNETRAKLDELSSKRETSGEKSRQLRDAQQDARDKMEEIERQVRELKSKISA 283
Query: 301 YVEENERLRAILGEWSTRAAKLE---RALEVERMSNIELQKKISTRRNQ 346
EE E+L + E + KLE + L+ E N E +K++ R +
Sbjct: 284 MKEEKEQLSSERQEQIKQRTKLELKTKDLQDELAGNSEQRKRLLKERQK 332
>sp|Q4WY31|ATG11_ASPFU Autophagy-related protein 11 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=atg11
PE=3 SV=1
Length = 1264
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAK 321
E + L MNQL++E++ A+ +RE+E+ +VR + +E E+L A+ E +K
Sbjct: 781 ENKALEERMNQLETEVQDAKQSAEQRESELAQVR---GELAQEKEKLAAVQSELHDERSK 837
Query: 322 L 322
L
Sbjct: 838 L 838
>sp|Q62812|MYH9_RAT Myosin-9 OS=Rattus norvegicus GN=Myh9 PE=1 SV=3
Length = 1961
Score = 33.1 bits (74), Expect = 3.6, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 12/148 (8%)
Query: 205 GRLSDEQMALLQYQRENLHFLSEEILRLQECLSKY--------EQSDDGSTPQVDL---A 253
G L++E ALLQ + ++ H + +LQE K+ E +D S QV+L
Sbjct: 1227 GELANEVKALLQGKGDSEHKRKKVEAQLQELQVKFSEGERVRTELADKVSKLQVELDSVT 1286
Query: 254 HLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILG 313
LL D + L+ + + L+S+L+ + + E + L + Q +E R L
Sbjct: 1287 GLLNQSDSKSSKLTKDFSALESQLQDTQELLQEENRQKLSLSTKLKQMEDEKNSFREQLE 1346
Query: 314 EWSTRAAK-LERALEVERMSNIELQKKI 340
E A + LE+ + +++KK+
Sbjct: 1347 EEEEEAKRNLEKQIATLHAQVTDMKKKM 1374
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 232 LQECLSKYEQSDDGSTPQV-DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAE 290
+++ +SK E++ + QV +L H L R EL++L +++ + ++A + +
Sbjct: 430 MEQTMSKMEKT---AYAQVENLEHQLTERSTELKSLKGDLDDTVTARKVAEKRATQTNEK 486
Query: 291 VLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQ 346
V ++ N E N+ LR W ++E+ +E ++ + E +KKI ++Q
Sbjct: 487 VNKLANELKDEREINQMLRKDQQVWK---GQVEKLIESQKTARTEYEKKIEDLQSQ 539
>sp|Q9JKY5|HIP1R_MOUSE Huntingtin-interacting protein 1-related protein OS=Mus musculus
GN=Hip1r PE=1 SV=2
Length = 1068
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 209 DEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSA 268
+EQ L+ + L + E+ R QE LS+ EQS GS +L+ L + E LS
Sbjct: 508 EEQSDQLEKLKRELAARAGELARAQEALSRTEQS--GS----ELSSRLDTLNAEKEALSG 561
Query: 269 EMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEV 328
+ Q ++EL A+S V E+E + + + ++Q E LR L E ++ L + L
Sbjct: 562 VVRQREAELLAAQSLVREKEEALSQEQQRSSQ---EKGELRGQLAEKESQEQGLRQKLLD 618
Query: 329 ERMS 332
E+++
Sbjct: 619 EQLA 622
>sp|P35579|MYH9_HUMAN Myosin-9 OS=Homo sapiens GN=MYH9 PE=1 SV=4
Length = 1960
Score = 32.7 bits (73), Expect = 4.8, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 11/147 (7%)
Query: 205 GRLSDEQMALLQYQRENLHFLSEEILRLQECLSKY--------EQSDDGSTPQVDLAH-- 254
G L++E LLQ + ++ H + +LQE K+ E +D + QV+L +
Sbjct: 1227 GELANEVKVLLQGKGDSEHKRKKVEAQLQELQVKFNEGERVRTELADKVTKLQVELDNVT 1286
Query: 255 -LLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILG 313
LL+ D + L+ + + L+S+L+ + + E + L + Q +E R L
Sbjct: 1287 GLLSQSDSKSSKLTKDFSALESQLQDTQELLQEENRQKLSLSTKLKQVEDEKNSFREQLE 1346
Query: 314 EWSTRAAKLERALEVERMSNIELQKKI 340
E LE+ + +++KK+
Sbjct: 1347 EEEEAKHNLEKQIATLHAQVADMKKKM 1373
>sp|P12419|MUNS_REOVD Protein mu-NS OS=Reovirus type 3 (strain Dearing) GN=M3 PE=3 SV=2
Length = 721
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 20/117 (17%)
Query: 225 LSEEILRLQE--CLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS 282
L ++++ L++ + K QSD TP V L LL+ +LR LS+E+ +LQ EL A+S
Sbjct: 494 LQQKVVELEKQIIMQKSIQSD--PTP-VALQPLLS----QLRELSSEVTRLQMELSRAQS 546
Query: 283 FVAEREAEV-----------LRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEV 328
A+ EA+V LR N + +E+E L A+ R +E+ EV
Sbjct: 547 LNAQLEADVKSAQSCSLDMYLRHHTCINGHAKEDELLDAVRVAPDVRREIMEKRSEV 603
>sp|Q6ZQ12|NINL_MOUSE Ninein-like protein OS=Mus musculus GN=Ninl PE=2 SV=3
Length = 1394
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 250 VDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLR 309
+L HLL +++E R LSA+ + + +L+ V + EA R+RN E+ E LR
Sbjct: 1273 AELQHLLNVKEEEARRLSAQQEEYRQQLKAREDQVEDAEA---RLRNVEWLLQEKVEELR 1329
Query: 310 AILGEWSTRAAKLERALEVERMSNIELQKKIS-TRRNQHGPAESN 353
E +TR+ L + L VE N L K + T Q G + N
Sbjct: 1330 KQF-EKNTRSDLLLKELYVE---NAHLMKAVQLTEEKQRGAEKKN 1370
>sp|Q5R4K5|SMC3_PONAB Structural maintenance of chromosomes protein 3 OS=Pongo abelii
GN=SMC3 PE=2 SV=1
Length = 1217
Score = 31.6 bits (70), Expect = 8.6, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 26/150 (17%)
Query: 214 LLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMN-- 271
LL+Y E LH L EE +E L++Y++ D ++ A +QEL A+++
Sbjct: 192 LLKYIEERLHTLEEE----KEELAQYQKWD-----KMRRALEYTIYNQELNETRAKLDEL 242
Query: 272 ------------QLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRA 319
QL+ + AR + + E +V ++ + EE E+L A E +
Sbjct: 243 SAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQLSAERQEQIKQR 302
Query: 320 AKLE---RALEVERMSNIELQKKISTRRNQ 346
KLE + L+ E N E +K++ R +
Sbjct: 303 TKLELKAKDLQDELAGNSEQRKRLLKERQK 332
>sp|O76329|ACTNB_DICDI Interaptin OS=Dictyostelium discoideum GN=abpD PE=1 SV=1
Length = 1738
Score = 31.6 bits (70), Expect = 9.6, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 73/140 (52%), Gaps = 16/140 (11%)
Query: 219 RENLHFLSEEILRLQECLSK------YEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQ 272
+ENL+ +E+L+LQ L++ ++Q + +++ L+ ++++L L + +Q
Sbjct: 891 KENLNEKEQELLKLQNQLNQQIEKIQFDQQEFSKQNSINI-ELVNEKNEKLIQLQQDYDQ 949
Query: 273 LQSELRLA----RSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEV 328
L+ + R + + E+E ++ ++N NQ +E+NE E + +E L +
Sbjct: 950 LKQQNRSNDEKDENDLIEKENQLKSIQNELNQLIEKNESDHK---EQQLKQQSIENDL-I 1005
Query: 329 ERMSNI-ELQKKISTRRNQH 347
E+ + I +LQ +++ +R Q
Sbjct: 1006 EKENQIQQLQSQLNEQRQQQ 1025
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,971,113
Number of Sequences: 539616
Number of extensions: 4557101
Number of successful extensions: 16165
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 336
Number of HSP's that attempted gapping in prelim test: 15742
Number of HSP's gapped (non-prelim): 803
length of query: 358
length of database: 191,569,459
effective HSP length: 119
effective length of query: 239
effective length of database: 127,355,155
effective search space: 30437882045
effective search space used: 30437882045
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)