Query 018324
Match_columns 358
No_of_seqs 73 out of 75
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 08:02:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14802 TMEM192: TMEM192 fami 100.0 1.2E-59 2.5E-64 439.1 22.1 195 39-233 24-236 (236)
2 KOG0999 Microtubule-associated 95.9 0.18 3.8E-06 54.2 13.8 129 225-356 62-202 (772)
3 PF09730 BicD: Microtubule-ass 94.9 0.08 1.7E-06 57.9 7.8 107 243-352 12-125 (717)
4 PRK09039 hypothetical protein; 92.7 3.6 7.8E-05 41.2 14.3 40 306-345 140-179 (343)
5 PRK09039 hypothetical protein; 91.3 2.3 5E-05 42.5 11.1 102 217-345 43-144 (343)
6 TIGR03495 phage_LysB phage lys 90.9 2.9 6.2E-05 37.4 10.2 80 260-339 18-97 (135)
7 PLN03188 kinesin-12 family pro 90.6 2.6 5.6E-05 49.1 11.8 125 207-338 885-1100(1320)
8 PF14362 DUF4407: Domain of un 90.5 12 0.00027 35.9 15.0 29 73-101 46-75 (301)
9 PF13870 DUF4201: Domain of un 90.0 14 0.0003 33.1 14.2 38 210-247 3-40 (177)
10 TIGR01010 BexC_CtrB_KpsE polys 89.2 7.7 0.00017 38.1 12.7 129 213-345 170-306 (362)
11 PF15619 Lebercilin: Ciliary p 88.7 21 0.00045 33.4 14.9 114 207-327 21-149 (194)
12 TIGR02168 SMC_prok_B chromosom 86.9 12 0.00026 41.0 13.4 41 287-327 864-904 (1179)
13 KOG0288 WD40 repeat protein Ti 86.8 5.5 0.00012 41.8 10.3 63 249-311 15-77 (459)
14 PRK09841 cryptic autophosphory 86.2 22 0.00047 38.8 14.9 128 214-345 268-398 (726)
15 PRK11519 tyrosine kinase; Prov 84.4 31 0.00068 37.6 15.0 40 212-251 266-305 (719)
16 PF06548 Kinesin-related: Kine 84.3 21 0.00046 37.9 13.1 79 262-340 196-332 (488)
17 KOG4552 Vitamin-D-receptor int 83.0 6.9 0.00015 38.1 8.4 77 218-296 16-95 (272)
18 PF14802 TMEM192: TMEM192 fami 82.9 11 0.00025 36.3 9.9 33 207-239 203-235 (236)
19 PF05622 HOOK: HOOK protein; 82.9 2.5 5.4E-05 45.8 6.1 69 278-346 263-340 (713)
20 PRK10884 SH3 domain-containing 82.8 10 0.00022 35.8 9.4 63 265-327 97-163 (206)
21 TIGR03007 pepcterm_ChnLen poly 81.8 20 0.00042 36.7 11.7 37 212-248 160-196 (498)
22 TIGR03752 conj_TIGR03752 integ 81.1 3.9 8.5E-05 43.2 6.5 68 260-330 44-111 (472)
23 KOG0977 Nuclear envelope prote 81.0 40 0.00087 36.5 14.0 132 215-346 58-212 (546)
24 PF00038 Filament: Intermediat 80.8 23 0.00049 33.9 11.2 106 215-325 20-125 (312)
25 PF12325 TMF_TATA_bd: TATA ele 76.5 36 0.00078 29.8 10.1 76 252-327 21-106 (120)
26 PF04156 IncA: IncA protein; 76.3 57 0.0012 29.1 18.1 12 225-236 100-111 (191)
27 PF04094 DUF390: Protein of un 76.1 15 0.00033 41.0 9.3 96 252-348 535-634 (828)
28 PF07888 CALCOCO1: Calcium bin 75.5 92 0.002 33.9 14.7 86 262-347 312-408 (546)
29 PF10186 Atg14: UV radiation r 75.0 72 0.0016 29.7 13.1 131 207-343 22-159 (302)
30 PF06785 UPF0242: Uncharacteri 73.8 22 0.00048 36.7 9.2 80 252-331 90-176 (401)
31 KOG0804 Cytoplasmic Zn-finger 73.2 59 0.0013 34.8 12.3 80 254-333 354-433 (493)
32 TIGR01843 type_I_hlyD type I s 73.1 95 0.0021 30.2 14.2 33 262-294 152-184 (423)
33 PF06818 Fez1: Fez1; InterPro 72.2 70 0.0015 30.6 11.6 106 228-333 32-168 (202)
34 KOG0250 DNA repair protein RAD 71.0 90 0.0019 36.5 14.0 64 212-275 660-724 (1074)
35 PF08581 Tup_N: Tup N-terminal 70.4 31 0.00067 28.3 7.7 19 296-314 57-75 (79)
36 PF11368 DUF3169: Protein of u 69.3 1E+02 0.0023 29.1 12.6 48 84-131 64-115 (248)
37 PF04977 DivIC: Septum formati 69.3 16 0.00034 27.9 5.6 45 262-307 18-62 (80)
38 KOG1029 Endocytic adaptor prot 69.0 86 0.0019 35.9 12.9 24 213-236 430-453 (1118)
39 PF09726 Macoilin: Transmembra 68.6 30 0.00066 38.2 9.6 84 264-347 421-518 (697)
40 PF06785 UPF0242: Uncharacteri 68.6 38 0.00083 35.0 9.5 73 276-348 86-158 (401)
41 PF08614 ATG16: Autophagy prot 68.5 31 0.00066 31.6 8.2 39 256-294 111-149 (194)
42 PRK02224 chromosome segregatio 68.3 85 0.0019 34.4 12.9 34 299-332 616-649 (880)
43 TIGR01843 type_I_hlyD type I s 68.2 1.2E+02 0.0027 29.5 13.2 45 244-292 190-234 (423)
44 PF13870 DUF4201: Domain of un 68.1 91 0.002 27.9 12.2 92 218-315 47-138 (177)
45 PRK11637 AmiB activator; Provi 67.9 1.3E+02 0.0028 30.7 13.3 88 207-314 164-251 (428)
46 COG1196 Smc Chromosome segrega 67.9 1.5E+02 0.0032 34.4 15.1 63 265-327 790-852 (1163)
47 PF10146 zf-C4H2: Zinc finger- 67.6 76 0.0017 30.6 11.0 59 253-311 42-103 (230)
48 PF04859 DUF641: Plant protein 67.2 11 0.00025 33.5 5.0 74 229-326 54-131 (131)
49 PRK10361 DNA recombination pro 67.2 45 0.00097 35.6 10.1 47 299-345 63-109 (475)
50 COG2433 Uncharacterized conser 67.2 34 0.00073 37.7 9.3 73 264-337 439-516 (652)
51 PRK02224 chromosome segregatio 66.8 1.1E+02 0.0023 33.7 13.2 26 322-347 375-400 (880)
52 PF12325 TMF_TATA_bd: TATA ele 66.1 23 0.0005 31.0 6.6 80 217-296 20-103 (120)
53 TIGR00219 mreC rod shape-deter 63.8 16 0.00035 35.7 5.8 14 301-314 96-109 (283)
54 PF05667 DUF812: Protein of un 63.6 64 0.0014 35.1 10.7 89 256-344 323-421 (594)
55 TIGR01005 eps_transp_fam exopo 63.5 1.5E+02 0.0032 32.3 13.4 32 214-245 195-226 (754)
56 TIGR02231 conserved hypothetic 63.5 53 0.0011 34.3 9.8 37 290-326 125-161 (525)
57 PF12128 DUF3584: Protein of u 61.9 1.6E+02 0.0035 34.3 14.1 134 210-343 246-385 (1201)
58 PF12711 Kinesin-relat_1: Kine 61.4 65 0.0014 27.0 8.1 57 217-294 21-79 (86)
59 PF15070 GOLGA2L5: Putative go 59.7 73 0.0016 34.9 10.3 38 294-331 99-136 (617)
60 PF09486 HrpB7: Bacterial type 58.3 1.3E+02 0.0027 27.8 10.1 51 262-312 87-137 (158)
61 PF03245 Phage_lysis: Bacterio 57.9 36 0.00079 29.6 6.4 40 267-306 6-45 (125)
62 PF02050 FliJ: Flagellar FliJ 57.9 90 0.002 24.5 12.5 100 219-318 11-121 (123)
63 PRK10884 SH3 domain-containing 57.5 1E+02 0.0022 29.3 9.7 34 207-240 80-113 (206)
64 KOG4324 Guanine nucleotide exc 57.0 57 0.0012 34.7 8.6 133 206-345 93-236 (476)
65 PF09304 Cortex-I_coil: Cortex 56.4 14 0.00031 32.1 3.6 43 303-345 2-44 (107)
66 PF06008 Laminin_I: Laminin Do 56.2 1.9E+02 0.004 27.6 14.7 73 221-294 95-172 (264)
67 PF07111 HCR: Alpha helical co 56.2 2.4E+02 0.0051 31.9 13.4 87 260-346 477-564 (739)
68 PRK04863 mukB cell division pr 56.1 1.3E+02 0.0028 36.4 12.2 35 207-242 302-336 (1486)
69 PRK14127 cell division protein 55.5 22 0.00048 30.8 4.6 56 290-345 38-99 (109)
70 COG1196 Smc Chromosome segrega 54.4 1.8E+02 0.0039 33.7 12.8 40 306-345 810-849 (1163)
71 PF00038 Filament: Intermediat 54.4 2E+02 0.0044 27.5 11.6 65 266-330 207-275 (312)
72 TIGR03017 EpsF chain length de 54.2 1.8E+02 0.0039 29.1 11.5 35 213-247 171-205 (444)
73 KOG0977 Nuclear envelope prote 53.7 2E+02 0.0044 31.3 12.3 51 263-313 143-193 (546)
74 PF09755 DUF2046: Uncharacteri 53.5 2.6E+02 0.0057 28.5 13.3 121 225-358 82-215 (310)
75 PHA02562 46 endonuclease subun 53.5 2.7E+02 0.0059 28.7 13.7 105 216-326 258-381 (562)
76 PF14817 HAUS5: HAUS augmin-li 53.3 1.9E+02 0.0041 32.0 12.2 77 208-293 32-111 (632)
77 PF04111 APG6: Autophagy prote 53.2 74 0.0016 31.7 8.5 25 216-240 12-36 (314)
78 PF07798 DUF1640: Protein of u 53.0 1.3E+02 0.0028 27.2 9.3 75 265-345 77-152 (177)
79 PF09304 Cortex-I_coil: Cortex 52.6 1.5E+02 0.0032 26.0 9.1 13 251-263 13-25 (107)
80 KOG4673 Transcription factor T 52.5 2.6E+02 0.0056 32.0 12.9 130 207-346 465-629 (961)
81 TIGR00606 rad50 rad50. This fa 51.9 2.9E+02 0.0063 32.5 14.0 67 224-294 796-862 (1311)
82 KOG4643 Uncharacterized coiled 51.8 1E+02 0.0022 36.1 10.1 103 215-317 127-250 (1195)
83 PF09726 Macoilin: Transmembra 51.6 1.1E+02 0.0023 34.1 10.1 81 265-345 549-629 (697)
84 COG3074 Uncharacterized protei 51.2 59 0.0013 26.9 6.1 50 262-314 26-75 (79)
85 PRK00888 ftsB cell division pr 50.7 48 0.001 28.1 5.8 32 264-295 30-61 (105)
86 KOG4673 Transcription factor T 50.1 3E+02 0.0064 31.5 12.9 101 212-329 452-563 (961)
87 PF11932 DUF3450: Protein of u 49.7 2.2E+02 0.0048 26.9 10.7 52 265-316 102-159 (251)
88 PF12761 End3: Actin cytoskele 49.2 1.2E+02 0.0026 29.0 8.7 78 217-295 100-194 (195)
89 KOG0249 LAR-interacting protei 49.1 1.8E+02 0.0039 33.2 11.1 75 207-283 99-185 (916)
90 PF06638 Strabismus: Strabismu 48.7 47 0.001 35.7 6.6 26 195-220 239-267 (505)
91 TIGR02808 short_TIGR02808 cons 48.0 14 0.0003 27.4 1.8 21 46-66 19-39 (42)
92 PF03268 DUF267: Caenorhabditi 47.8 1.1E+02 0.0023 31.7 8.7 199 27-242 11-251 (353)
93 PF09730 BicD: Microtubule-ass 47.7 2.8E+02 0.0061 31.2 12.5 74 262-345 360-433 (717)
94 cd08318 Death_NMPP84 Death dom 47.7 34 0.00074 27.7 4.3 46 279-328 24-75 (86)
95 PRK13922 rod shape-determining 47.5 69 0.0015 30.5 7.0 15 300-314 97-111 (276)
96 COG2433 Uncharacterized conser 47.5 1.6E+02 0.0035 32.7 10.4 75 271-345 418-509 (652)
97 TIGR03185 DNA_S_dndD DNA sulfu 47.0 1.4E+02 0.003 32.2 9.9 98 229-326 184-285 (650)
98 TIGR02680 conserved hypothetic 46.4 3.7E+02 0.0081 32.0 13.9 112 217-329 234-359 (1353)
99 PF08687 ASD2: Apx/Shroom doma 46.3 1.8E+02 0.0039 28.9 9.7 74 255-328 94-172 (264)
100 KOG4643 Uncharacterized coiled 46.2 4.9E+02 0.011 30.9 14.2 82 264-345 477-558 (1195)
101 PF06818 Fez1: Fez1; InterPro 46.1 1E+02 0.0022 29.5 7.8 33 267-299 9-41 (202)
102 TIGR02231 conserved hypothetic 45.9 1.1E+02 0.0023 32.0 8.7 86 262-347 72-168 (525)
103 KOG1962 B-cell receptor-associ 45.5 3E+02 0.0064 26.8 17.8 34 206-239 83-116 (216)
104 PF10174 Cast: RIM-binding pro 45.2 3.5E+02 0.0075 30.8 12.8 57 256-312 109-165 (775)
105 KOG3088 Secretory carrier memb 45.1 26 0.00056 35.4 3.9 37 257-293 56-92 (313)
106 PF09574 DUF2374: Protein of 44.8 19 0.0004 26.7 2.1 22 45-66 18-39 (42)
107 PF04111 APG6: Autophagy prote 44.7 2.6E+02 0.0056 27.9 10.8 8 338-345 127-134 (314)
108 PF10168 Nup88: Nuclear pore c 43.7 2E+02 0.0043 32.1 10.7 80 264-346 539-622 (717)
109 PHA02562 46 endonuclease subun 43.5 3.2E+02 0.007 28.2 11.6 29 213-241 299-327 (562)
110 PF07856 Orai-1: Mediator of C 43.4 1E+02 0.0022 28.6 7.2 47 46-92 27-82 (175)
111 PF06810 Phage_GP20: Phage min 42.9 1.9E+02 0.0041 26.1 8.7 69 256-328 8-76 (155)
112 PF09325 Vps5: Vps5 C terminal 42.0 1.5E+02 0.0033 26.8 8.1 64 264-327 124-187 (236)
113 KOG0963 Transcription factor/C 41.3 5.5E+02 0.012 28.7 13.5 121 207-330 180-330 (629)
114 PF07106 TBPIP: Tat binding pr 41.1 2E+02 0.0043 25.6 8.5 17 210-226 2-18 (169)
115 PF08614 ATG16: Autophagy prot 41.0 1.1E+02 0.0024 27.9 7.1 78 265-342 92-169 (194)
116 TIGR02894 DNA_bind_RsfA transc 40.3 1.6E+02 0.0034 27.5 7.8 112 230-343 13-144 (161)
117 PF06156 DUF972: Protein of un 40.1 1.2E+02 0.0027 26.0 6.7 52 266-317 6-57 (107)
118 TIGR02559 HrpB7 type III secre 39.8 1.9E+02 0.004 27.0 8.2 90 231-330 51-141 (158)
119 KOG3814 Signaling protein van 39.8 45 0.00097 35.3 4.7 21 53-73 121-141 (531)
120 PF08317 Spc7: Spc7 kinetochor 39.7 3.9E+02 0.0084 26.5 12.1 36 262-297 210-245 (325)
121 PF00669 Flagellin_N: Bacteria 39.7 2.3E+02 0.0049 23.8 9.7 79 218-296 10-90 (139)
122 PF08317 Spc7: Spc7 kinetochor 39.5 2.9E+02 0.0063 27.4 10.2 53 275-327 209-268 (325)
123 TIGR01005 eps_transp_fam exopo 39.3 4.9E+02 0.011 28.4 12.6 31 316-346 375-405 (754)
124 TIGR03007 pepcterm_ChnLen poly 39.2 3.8E+02 0.0083 27.4 11.3 33 312-344 350-382 (498)
125 PRK11637 AmiB activator; Provi 39.0 4.4E+02 0.0095 26.9 13.3 38 256-293 98-135 (428)
126 PF10186 Atg14: UV radiation r 38.8 3.3E+02 0.0071 25.4 13.8 52 262-313 57-108 (302)
127 PF15456 Uds1: Up-regulated Du 38.8 2.7E+02 0.0059 24.5 9.1 66 261-329 29-107 (124)
128 TIGR00606 rad50 rad50. This fa 38.5 7.3E+02 0.016 29.3 14.8 69 214-286 793-861 (1311)
129 PF08618 Opi1: Transcription f 38.5 70 0.0015 33.7 5.9 30 213-242 235-264 (427)
130 PF07099 DUF1361: Protein of u 38.5 69 0.0015 29.1 5.3 32 152-183 108-141 (168)
131 KOG0980 Actin-binding protein 38.2 2.2E+02 0.0047 33.1 9.8 70 257-326 329-409 (980)
132 PF09787 Golgin_A5: Golgin sub 38.1 4.4E+02 0.0096 27.8 11.8 58 261-321 274-331 (511)
133 PF15070 GOLGA2L5: Putative go 37.8 2.2E+02 0.0047 31.4 9.7 76 221-302 161-236 (617)
134 KOG0161 Myosin class II heavy 37.5 5E+02 0.011 32.7 13.3 130 215-345 973-1132(1930)
135 COG1792 MreC Cell shape-determ 37.0 57 0.0012 32.0 4.8 19 297-315 91-109 (284)
136 KOG0946 ER-Golgi vesicle-tethe 36.9 7.4E+02 0.016 28.9 17.8 97 217-313 615-716 (970)
137 PF10174 Cast: RIM-binding pro 36.7 6.9E+02 0.015 28.5 14.4 48 300-347 462-509 (775)
138 PLN02939 transferase, transfer 36.7 1.9E+02 0.0042 33.6 9.4 87 225-321 298-401 (977)
139 PF07926 TPR_MLP1_2: TPR/MLP1/ 36.6 1.8E+02 0.0039 25.1 7.3 61 286-346 7-67 (132)
140 KOG4403 Cell surface glycoprot 36.3 2.3E+02 0.0049 30.7 9.2 42 216-257 238-290 (575)
141 PF15035 Rootletin: Ciliary ro 36.3 3.6E+02 0.0078 25.1 14.7 27 210-236 13-39 (182)
142 KOG4674 Uncharacterized conser 36.1 2.5E+02 0.0054 34.9 10.5 98 224-321 56-168 (1822)
143 TIGR03495 phage_LysB phage lys 36.0 1.2E+02 0.0027 27.2 6.3 81 217-310 16-96 (135)
144 PF03653 UPF0093: Uncharacteri 35.9 3.1E+02 0.0068 24.3 9.2 92 79-177 16-116 (147)
145 PF07888 CALCOCO1: Calcium bin 35.7 4.4E+02 0.0096 28.9 11.4 65 262-326 165-229 (546)
146 COG4942 Membrane-bound metallo 35.4 3.7E+02 0.0081 28.5 10.6 42 258-299 35-76 (420)
147 PRK15396 murein lipoprotein; P 35.1 1E+02 0.0022 25.3 5.2 32 262-293 33-64 (78)
148 TIGR02209 ftsL_broad cell divi 34.7 1.4E+02 0.0031 23.2 5.9 41 286-327 28-68 (85)
149 TIGR00870 trp transient-recept 34.5 2.9E+02 0.0064 29.8 10.0 23 39-61 355-377 (743)
150 KOG0982 Centrosomal protein Nu 34.4 5E+02 0.011 28.1 11.2 78 258-339 266-354 (502)
151 COG1579 Zn-ribbon protein, pos 34.4 4.6E+02 0.0099 25.7 13.5 40 256-295 84-123 (239)
152 PRK11281 hypothetical protein; 34.3 8.6E+02 0.019 28.9 15.1 63 222-284 89-158 (1113)
153 PHA02702 ORF033 IMV membrane p 34.2 1.2E+02 0.0026 25.2 5.5 31 146-176 41-75 (78)
154 PF09971 DUF2206: Predicted me 34.2 5.3E+02 0.012 26.4 13.0 82 76-175 121-204 (367)
155 PF07782 DC_STAMP: DC-STAMP-li 34.1 3.7E+02 0.0079 24.5 10.1 32 142-173 142-173 (191)
156 cd08317 Death_ank Death domain 33.7 76 0.0016 25.3 4.2 43 284-328 25-73 (84)
157 PF08961 DUF1875: Domain of un 33.7 14 0.0003 36.1 0.0 43 283-325 123-165 (243)
158 COG1566 EmrA Multidrug resista 33.4 3.6E+02 0.0077 27.7 9.9 57 255-311 99-159 (352)
159 KOG0250 DNA repair protein RAD 33.3 9E+02 0.019 28.8 14.6 83 209-293 284-376 (1074)
160 PF10226 DUF2216: Uncharacteri 33.1 1.2E+02 0.0025 29.2 5.9 23 289-311 55-77 (195)
161 COG5102 SFT2 Membrane protein 33.0 4.5E+02 0.0097 25.2 11.0 36 101-136 117-152 (201)
162 PF05557 MAD: Mitotic checkpoi 33.0 38 0.00083 36.9 3.2 36 209-244 395-430 (722)
163 PF05130 FlgN: FlgN protein; 32.8 2.7E+02 0.0058 22.6 7.7 33 273-305 82-114 (143)
164 PF09738 DUF2051: Double stran 32.5 2.9E+02 0.0064 27.8 9.0 83 207-290 135-248 (302)
165 cd08319 Death_RAIDD Death doma 32.4 2.8E+02 0.0061 22.7 7.4 58 269-328 4-71 (83)
166 PF00170 bZIP_1: bZIP transcri 32.2 2.2E+02 0.0048 21.4 6.7 47 279-325 16-62 (64)
167 TIGR03752 conj_TIGR03752 integ 31.9 3.4E+02 0.0074 29.2 9.7 28 243-281 52-79 (472)
168 TIGR01000 bacteriocin_acc bact 31.9 5.8E+02 0.013 26.2 14.2 18 219-236 103-120 (457)
169 PF05392 COX7B: Cytochrome C o 31.5 41 0.00089 28.0 2.4 33 39-71 42-74 (80)
170 PF12329 TMF_DNA_bd: TATA elem 31.2 2.7E+02 0.0059 22.2 7.2 15 282-296 5-19 (74)
171 smart00787 Spc7 Spc7 kinetocho 31.2 4.8E+02 0.01 26.2 10.2 68 264-345 192-260 (312)
172 PF12777 MT: Microtubule-bindi 30.7 2E+02 0.0044 28.6 7.5 74 261-334 221-297 (344)
173 PRK15396 murein lipoprotein; P 30.6 1.3E+02 0.0027 24.8 5.1 38 269-306 26-63 (78)
174 KOG0249 LAR-interacting protei 30.6 4.8E+02 0.01 30.0 10.8 94 214-316 164-257 (916)
175 PF06005 DUF904: Protein of un 29.9 2.9E+02 0.0064 22.2 8.1 54 271-324 7-67 (72)
176 PF00769 ERM: Ezrin/radixin/mo 29.4 5.2E+02 0.011 24.9 11.3 40 288-327 60-99 (246)
177 PF14645 Chibby: Chibby family 29.4 92 0.002 27.1 4.3 38 290-327 72-116 (116)
178 PF09323 DUF1980: Domain of un 29.2 1.6E+02 0.0034 26.7 6.0 28 44-71 2-29 (182)
179 PF11802 CENP-K: Centromere-as 29.0 6.1E+02 0.013 25.5 12.0 77 268-345 92-168 (268)
180 PRK04778 septation ring format 28.9 3.9E+02 0.0085 28.5 9.7 20 216-235 320-339 (569)
181 PF02932 Neur_chan_memb: Neuro 28.8 2.6E+02 0.0056 22.9 6.7 21 305-325 200-220 (237)
182 PF10498 IFT57: Intra-flagella 28.8 3.7E+02 0.0079 27.6 9.1 49 262-317 274-322 (359)
183 KOG3402 Predicted membrane pro 28.7 39 0.00084 29.1 1.8 32 24-55 40-77 (101)
184 PF11003 DUF2842: Protein of u 28.5 1.4E+02 0.0031 23.4 4.9 25 37-61 1-26 (62)
185 PF07407 Seadorna_VP6: Seadorn 28.4 72 0.0016 33.1 4.0 33 302-338 38-71 (420)
186 PF05961 Chordopox_A13L: Chord 28.4 86 0.0019 25.5 3.7 31 152-182 6-36 (68)
187 KOG4538 Predicted coiled-coil 28.1 1.8E+02 0.0039 26.0 5.9 47 276-334 52-98 (130)
188 PRK13169 DNA replication intia 27.7 2.5E+02 0.0055 24.4 6.7 49 267-315 7-55 (110)
189 TIGR03185 DNA_S_dndD DNA sulfu 27.7 8.1E+02 0.018 26.5 12.7 93 223-315 394-495 (650)
190 PRK15178 Vi polysaccharide exp 27.3 6.9E+02 0.015 26.6 11.0 79 210-292 239-317 (434)
191 PRK12821 aspartyl/glutamyl-tRN 27.2 4.3E+02 0.0092 28.6 9.4 119 40-174 219-353 (477)
192 TIGR02680 conserved hypothetic 27.2 1.2E+03 0.025 28.1 15.8 55 274-328 867-921 (1353)
193 COG3264 Small-conductance mech 27.2 4E+02 0.0086 30.7 9.7 70 207-282 52-121 (835)
194 PF10251 PEN-2: Presenilin enh 27.1 43 0.00093 28.5 1.9 21 36-56 53-73 (94)
195 PF14182 YgaB: YgaB-like prote 27.1 2.3E+02 0.0049 23.7 5.9 56 227-304 14-69 (79)
196 PF10212 TTKRSYEDQ: Predicted 27.0 7.6E+02 0.017 27.0 11.4 48 72-121 168-215 (518)
197 PF15254 CCDC14: Coiled-coil d 26.9 9.3E+02 0.02 27.9 12.3 119 215-336 389-527 (861)
198 PF13514 AAA_27: AAA domain 26.9 8.6E+02 0.019 28.2 12.5 103 215-317 298-404 (1111)
199 COG1988 Predicted membrane-bou 26.8 96 0.0021 28.5 4.3 33 29-61 59-92 (190)
200 PF10654 DUF2481: Protein of u 26.7 61 0.0013 29.0 2.8 34 208-242 9-42 (126)
201 PF11932 DUF3450: Protein of u 26.6 5.5E+02 0.012 24.2 10.1 76 260-335 62-149 (251)
202 PF09486 HrpB7: Bacterial type 26.6 5.1E+02 0.011 23.9 10.6 62 262-330 79-141 (158)
203 PF07106 TBPIP: Tat binding pr 26.5 2.3E+02 0.005 25.2 6.5 12 266-277 91-102 (169)
204 PF14142 YrzO: YrzO-like prote 26.4 56 0.0012 24.4 2.1 16 206-221 26-41 (46)
205 PRK10245 adrA diguanylate cycl 26.2 6.6E+02 0.014 25.0 10.5 53 40-97 44-96 (366)
206 TIGR00219 mreC rod shape-deter 26.1 96 0.0021 30.4 4.3 14 302-315 72-85 (283)
207 COG4792 EscU Type III secretor 26.1 4.1E+02 0.009 27.5 8.8 134 42-218 151-298 (349)
208 PF01763 Herpes_UL6: Herpesvir 26.1 82 0.0018 34.3 4.1 36 208-243 372-407 (557)
209 PF15022 DUF4522: Protein of u 26.1 60 0.0013 28.5 2.6 30 316-345 71-100 (117)
210 PF08657 DASH_Spc34: DASH comp 25.9 2.1E+02 0.0045 28.1 6.6 66 209-274 177-259 (259)
211 TIGR02268 Myxococcus xanthus p 25.8 52 0.0011 33.1 2.4 20 291-310 140-159 (295)
212 PF11833 DUF3353: Protein of u 25.8 1.2E+02 0.0026 28.5 4.7 55 32-86 132-192 (194)
213 PF07760 DUF1616: Protein of u 25.8 2.2E+02 0.0047 27.7 6.7 49 120-171 59-110 (287)
214 PF11239 DUF3040: Protein of u 25.7 2.2E+02 0.0048 22.7 5.7 43 16-61 20-62 (82)
215 KOG2129 Uncharacterized conser 25.6 8.9E+02 0.019 26.3 13.0 100 210-314 198-303 (552)
216 PF13858 DUF4199: Protein of u 25.4 4.4E+02 0.0095 22.7 7.9 37 78-114 34-70 (163)
217 PF08172 CASP_C: CASP C termin 25.0 3.7E+02 0.0081 26.2 8.0 81 265-345 3-121 (248)
218 PF12896 Apc4: Anaphase-promot 24.9 1.4E+02 0.0029 27.1 4.8 50 210-259 28-85 (210)
219 PRK09973 putative outer membra 24.8 1.8E+02 0.0039 24.5 5.1 24 262-285 32-55 (85)
220 PF10066 DUF2304: Uncharacteri 24.7 4.1E+02 0.0089 22.4 7.4 64 34-98 24-92 (115)
221 PRK10559 p-hydroxybenzoic acid 24.6 3.2E+02 0.007 26.6 7.6 27 268-294 85-111 (310)
222 PRK11877 psaI photosystem I re 24.3 52 0.0011 24.0 1.6 27 55-81 6-32 (38)
223 PF05667 DUF812: Protein of un 24.1 4.1E+02 0.0089 29.2 8.9 62 265-326 325-386 (594)
224 PRK10929 putative mechanosensi 24.0 1.3E+03 0.028 27.6 15.5 73 211-283 43-138 (1109)
225 TIGR03017 EpsF chain length de 24.0 7.4E+02 0.016 24.8 11.7 16 306-321 321-336 (444)
226 TIGR01010 BexC_CtrB_KpsE polys 23.9 7.1E+02 0.015 24.6 10.6 44 207-250 186-244 (362)
227 PF04977 DivIC: Septum formati 23.9 2.4E+02 0.0052 21.3 5.4 30 286-315 21-50 (80)
228 TIGR01000 bacteriocin_acc bact 23.7 6.1E+02 0.013 26.0 9.7 47 270-316 238-286 (457)
229 KOG0161 Myosin class II heavy 23.5 1.4E+03 0.029 29.2 13.7 99 222-333 1430-1549(1930)
230 PRK00068 hypothetical protein; 23.3 2.7E+02 0.0059 32.4 7.7 57 72-134 216-274 (970)
231 COG1579 Zn-ribbon protein, pos 23.2 4.1E+02 0.0089 26.1 7.9 16 265-280 56-71 (239)
232 PF05557 MAD: Mitotic checkpoi 23.0 1.7E+02 0.0036 32.1 5.8 86 208-293 442-535 (722)
233 PRK15422 septal ring assembly 23.0 3.3E+02 0.0071 22.8 6.2 49 262-313 26-74 (79)
234 PF04849 HAP1_N: HAP1 N-termin 23.0 8.2E+02 0.018 25.0 13.8 114 208-342 162-287 (306)
235 PHA02246 hypothetical protein 22.9 94 0.002 29.3 3.4 82 106-188 51-146 (192)
236 PF13935 Ead_Ea22: Ead/Ea22-li 22.8 1.7E+02 0.0037 25.7 4.9 38 282-328 71-108 (139)
237 PRK13922 rod shape-determining 22.7 1.1E+02 0.0024 29.0 4.0 24 300-323 73-96 (276)
238 PRK03918 chromosome segregatio 22.6 1E+03 0.023 26.1 15.2 43 256-298 195-237 (880)
239 PF14584 DUF4446: Protein of u 22.6 2.1E+02 0.0045 25.9 5.5 53 231-284 24-76 (151)
240 KOG2991 Splicing regulator [RN 22.3 6.1E+02 0.013 25.8 9.0 41 301-343 222-262 (330)
241 PF10234 Cluap1: Clusterin-ass 22.3 3.9E+02 0.0085 26.6 7.7 50 265-314 187-236 (267)
242 KOG1278 Endosomal membrane pro 22.2 8.6E+02 0.019 27.2 10.7 126 39-182 333-467 (628)
243 PF10329 DUF2417: Region of un 22.2 1.2E+02 0.0026 29.5 4.1 43 81-133 51-93 (232)
244 PF12911 OppC_N: N-terminal TM 22.2 60 0.0013 23.5 1.6 27 38-64 14-40 (56)
245 PRK03918 chromosome segregatio 22.2 1.1E+03 0.023 26.0 13.7 30 265-294 623-652 (880)
246 PF04144 SCAMP: SCAMP family; 22.1 6.1E+02 0.013 23.1 10.8 88 19-121 17-104 (177)
247 PRK10929 putative mechanosensi 22.0 1.4E+03 0.03 27.3 14.2 18 280-297 213-230 (1109)
248 PRK10803 tol-pal system protei 21.9 3.1E+02 0.0068 26.5 6.9 57 253-309 46-103 (263)
249 PF05266 DUF724: Protein of un 21.7 2.9E+02 0.0062 25.9 6.4 55 255-309 125-179 (190)
250 PF14662 CCDC155: Coiled-coil 21.7 7.2E+02 0.016 23.9 11.9 39 309-347 150-188 (193)
251 PF13514 AAA_27: AAA domain 21.6 1.3E+03 0.028 26.8 13.1 71 262-332 897-976 (1111)
252 PRK05349 Na(+)-translocating N 21.5 3.5E+02 0.0076 28.6 7.5 52 51-102 350-401 (405)
253 PLN02776 prenyltransferase 21.5 6.7E+02 0.015 25.7 9.4 25 71-95 152-176 (341)
254 KOG4807 F-actin binding protei 21.3 3.3E+02 0.0072 29.2 7.3 62 219-280 469-538 (593)
255 cd01670 Death Death Domain: a 21.3 3.6E+02 0.0079 20.2 6.5 37 279-319 16-52 (79)
256 KOG3119 Basic region leucine z 21.2 2.9E+02 0.0062 27.0 6.5 35 313-347 218-252 (269)
257 COG4942 Membrane-bound metallo 21.2 1E+03 0.022 25.4 15.4 81 262-345 158-238 (420)
258 KOG0996 Structural maintenance 21.0 7.9E+02 0.017 29.7 10.7 72 244-315 539-610 (1293)
259 PF06210 DUF1003: Protein of u 21.0 4.2E+02 0.0092 22.8 6.8 58 45-102 10-69 (108)
260 PF10003 DUF2244: Integral mem 21.0 2E+02 0.0044 25.1 5.0 24 72-95 37-60 (140)
261 PF10824 DUF2580: Protein of u 20.9 3.9E+02 0.0085 20.5 7.1 67 260-326 9-80 (100)
262 PF05701 WEMBL: Weak chloropla 20.9 1E+03 0.022 25.3 13.0 92 213-313 235-326 (522)
263 PF12709 Kinetocho_Slk19: Cent 20.8 1.2E+02 0.0026 25.7 3.3 28 286-313 46-73 (87)
264 PF02403 Seryl_tRNA_N: Seryl-t 20.7 4.7E+02 0.01 21.3 8.0 56 260-326 35-90 (108)
265 PRK00888 ftsB cell division pr 20.7 2.8E+02 0.0061 23.5 5.6 38 286-323 31-68 (105)
266 PRK09098 type III secretion sy 20.7 7.6E+02 0.016 23.7 9.9 62 265-326 36-104 (233)
267 KOG3973 Uncharacterized conser 20.5 62 0.0013 33.9 1.9 27 235-261 248-274 (465)
268 PF14661 HAUS6_N: HAUS augmin- 20.4 7.5E+02 0.016 23.5 11.4 33 294-326 176-208 (247)
269 KOG2302 T-type voltage-gated C 20.2 1E+03 0.022 28.9 11.2 133 26-174 1147-1283(1956)
No 1
>PF14802 TMEM192: TMEM192 family
Probab=100.00 E-value=1.2e-59 Score=439.13 Aligned_cols=195 Identities=33% Similarity=0.471 Sum_probs=181.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhcccc
Q 018324 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHY--LIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVR 116 (358)
Q Consensus 39 ~~g~~~y~~~L~~yA~~~~~~pw~~~~~~~--~~~slL~y~~v~LWlLt~l~d~yvq~qH~KlRl~GYl~FYR~Tr~lkR 116 (358)
+.-+.+.+++.++.+++++++||.+-+..+ -..++++|+||+||++|+++|+|+|+||+|+|++||++|||+|+++||
T Consensus 24 v~~~~l~ll~~v~l~~~~~vl~~~~~~~~~~C~~y~iily~~v~lW~lt~l~d~y~k~~H~klr~~GY~~fyr~t~~~rr 103 (236)
T PF14802_consen 24 VPIFSLLLLLSVVLAIVGFVLCWYPPPDEDKCDVYFIILYLHVALWLLTYLFDRYIKHQHQKLRLQGYLDFYRKTKRLRR 103 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344567777888999999999998877643 456899999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHHHhhccc-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q 018324 117 LPFAITAYGTAAMLLVIVWRPHIS-----------ILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKS 185 (358)
Q Consensus 117 lPl~IvSlGNa~LLLI~~~~~~~~-----------~Ls~~~lLriil~LEli~al~~li~YIvkVrrFNk~kp~PDVl~e 185 (358)
+||+|||+||++||++++|.+++. ++++.+++++++++|++|++||++.||+||+||||+||+|||+++
T Consensus 104 ~Pl~ivS~gna~LLlv~~~~~~~~~~~~~~~c~~~~ls~~~~l~i~~~lE~~~~~~~~i~Yiv~V~kFN~~~~~PDv~~~ 183 (236)
T PF14802_consen 104 LPLQIVSLGNAVLLLVQAWQHHYFGPDFAEYCSVAPLSPQLYLQILCSLELLVLLPFLIIYIVKVRKFNKARPPPDVLRE 183 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccccchhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchh
Confidence 999999999999999999999872 489999999999999999999999999999999999999999999
Q ss_pred ccC--CCCCCCCCCCccccCCCc---hhHhhHHHHHHHHHHhHHhhHHHHHHH
Q 018324 186 LYS--PLQPSSSLEGLRYHDGGR---LSDEQMALLQYQRENLHFLSEEILRLQ 233 (358)
Q Consensus 186 e~s--~~~ps~~~~ElGfrd~g~---LlEKQADLIrYLkdHNa~LSkrIL~Lq 233 (358)
+++ +.+|+++++|+||+++++ ++|||||||+||||||++||+|||+||
T Consensus 184 ~~~~~~~~~~~~~~e~g~r~~~~~eellEkQadlI~yLk~hn~~L~~ril~l~ 236 (236)
T PF14802_consen 184 EYSRSYLYPSSSSSELGFRDGSSLEELLEKQADLIRYLKEHNARLSRRILALT 236 (236)
T ss_pred hhccccCCCCCCccccCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999 889999999999998874 999999999999999999999999985
No 2
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.18 Score=54.19 Aligned_cols=129 Identities=29% Similarity=0.373 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHhhhhcccC-----CCCCchhhHHhhhhhchhHH--h--hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHH
Q 018324 225 LSEEILRLQECLSKYEQSD-----DGSTPQVDLAHLLAARDQEL--R--TLSAEMNQLQSELRLARSFVAEREAEVLRVR 295 (358)
Q Consensus 225 LSkrIL~Lq~~l~kye~~~-----~g~t~qvdl~h~la~r~qel--R--a~~Ae~~q~~~el~~ar~li~er~~e~~~~r 295 (358)
.-.+|=.+++.+.+|.+.. ||-+---.|-.==|+++++. + .+.+|+.|+..||...++..+.=.+..+.+.
T Consensus 62 ~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~ 141 (772)
T KOG0999|consen 62 ARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLK 141 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3458888999999998764 55555555555558888876 2 7888899999998888888888888888888
Q ss_pred hhhhhhhhHhHHHHHHHhhhhhhHHHHHH---HHHHhhhccHHHHHHHHHhhhcCCCCCccccc
Q 018324 296 NTNNQYVEENERLRAILGEWSTRAAKLER---ALEVERMSNIELQKKISTRRNQHGPAESNEHD 356 (358)
Q Consensus 296 ~~n~q~~eEn~rlRa~l~Ews~raakle~---ale~er~~~~~~~~~~~~~r~~~~~~~~~~~~ 356 (358)
..|..-..+--|||+.|.|..-|-++|=- -||.| |+-|||+++.+|+++.+-|.-.|+
T Consensus 142 e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE---NIsLQKqVs~LR~sQVEyEglkhe 202 (772)
T KOG0999|consen 142 ESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE---NISLQKQVSNLRQSQVEYEGLKHE 202 (772)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHhhhhhhhhHHHHH
Confidence 88887778888999999999999998843 46666 778999999999998776655554
No 3
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.89 E-value=0.08 Score=57.86 Aligned_cols=107 Identities=28% Similarity=0.334 Sum_probs=76.2
Q ss_pred CCCCCchhhHHhhhhhchhHHh----hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhh
Q 018324 243 DDGSTPQVDLAHLLAARDQELR----TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTR 318 (358)
Q Consensus 243 ~~g~t~qvdl~h~la~r~qelR----a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~r 318 (358)
.||-+---+|-.==|+||.++. .+.+|+.|++.++..+++..+.=....+.++..+....-|-.+||+-+.|...|
T Consensus 12 ~~g~~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~r 91 (717)
T PF09730_consen 12 KDGEEREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFR 91 (717)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555577888774 566666666666666666666666666666666666677778999999999999
Q ss_pred HHHHHH---HHHHhhhccHHHHHHHHHhhhcCCCCCc
Q 018324 319 AAKLER---ALEVERMSNIELQKKISTRRNQHGPAES 352 (358)
Q Consensus 319 aakle~---ale~er~~~~~~~~~~~~~r~~~~~~~~ 352 (358)
-++|=. -||.| |+-|||+++.+|+++.+-|.
T Consensus 92 E~rll~dyselEeE---NislQKqvs~Lk~sQvefE~ 125 (717)
T PF09730_consen 92 EARLLQDYSELEEE---NISLQKQVSVLKQSQVEFEG 125 (717)
T ss_pred HHHHhhhhHHHHHH---HHHHHHHHHHHHHhHHHHHH
Confidence 988853 46766 88899999999998755443
No 4
>PRK09039 hypothetical protein; Validated
Probab=92.70 E-value=3.6 Score=41.16 Aligned_cols=40 Identities=28% Similarity=0.271 Sum_probs=26.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 306 ERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 306 ~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
++|++-+.....+-+.||.+|++-.-..-|.+.+|.++..
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666777777777666666666666666654
No 5
>PRK09039 hypothetical protein; Validated
Probab=91.31 E-value=2.3 Score=42.50 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=66.1
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHh
Q 018324 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRN 296 (358)
Q Consensus 217 YLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~ 296 (358)
||.+....+.++|=+|+.+++. |..+|+-+.+....+..++.+++.+++.|+..-++=++
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~-------------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~------- 102 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAE-------------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA------- 102 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 6667777777777777777743 77777777777778888888888877755443321111
Q ss_pred hhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 297 TNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 297 ~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
+|. -......+=..|++.|+.+|..++-..-|.+.++..++.
T Consensus 103 ---~~~----~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~ 144 (343)
T PRK09039 103 ---LLA----ELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQ 144 (343)
T ss_pred ---HHh----hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 111 112223455788999999999988877765555554444
No 6
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=90.91 E-value=2.9 Score=37.40 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=70.5
Q ss_pred hhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHH
Q 018324 260 DQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKK 339 (358)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~ 339 (358)
-.+++.+.+++++.+.+++..+.-|..+++.|..+......-.++..+||..++-=+.-++.=|..++...--|-+||+=
T Consensus 18 ~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~W 97 (135)
T TIGR03495 18 SQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRW 97 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 36788999999999999999999999999999999888888888899999999988888888888888777777777753
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=90.61 E-value=2.6 Score=49.13 Aligned_cols=125 Identities=28% Similarity=0.381 Sum_probs=82.8
Q ss_pred hhHhhHHHHHHH----------HHHhHHhhH----HHHHHHHHhhhhcccCCCCCchhhH--Hhhhhhc-hh--------
Q 018324 207 LSDEQMALLQYQ----------RENLHFLSE----EILRLQECLSKYEQSDDGSTPQVDL--AHLLAAR-DQ-------- 261 (358)
Q Consensus 207 LlEKQADLIrYL----------kdHNa~LSk----rIL~Lq~~l~kye~~~~g~t~qvdl--~h~la~r-~q-------- 261 (358)
+-.|||+=|.-| ++.|+..++ +|++| ++..||.-|--|. +.++.-. +.
T Consensus 885 ~c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~~~~~ki~~l-------~~~~dg~l~~~~~~~~~~~~~~~~~~~~~~~y~ 957 (1320)
T PLN03188 885 FCTKQASEITQLNRLVQQYKHERECNAIIGQTREDKIIRL-------ESLMDGVLSKEDFLEEELASLMHEHKLLKEKYE 957 (1320)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhHHHH-------hhhcccccchhhhhhhhhhhhhhhHHHHHHHhh
Confidence 667888877653 244666665 34444 4455898766654 1111111 11
Q ss_pred ---HHhhhHHHHHhHHHHHHHHHhhh--hHhH---HHHHHHHh------------------------hh-----------
Q 018324 262 ---ELRTLSAEMNQLQSELRLARSFV--AERE---AEVLRVRN------------------------TN----------- 298 (358)
Q Consensus 262 ---elRa~~Ae~~q~~~el~~ar~li--~er~---~e~~~~r~------------------------~n----------- 298 (358)
|+=...-|+.++|.|+...|-.+ +||+ .|||.+|. .+
T Consensus 958 ~~p~~~~~~~e~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i 1037 (1320)
T PLN03188 958 NHPEVLRTKIELKRVQDELEHYRNFYDMGEREVLLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTI 1037 (1320)
T ss_pred cChhhhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccchhhhccchhhhhhhcCcccccccccc
Confidence 33233458899999999999988 5887 67888886 11
Q ss_pred -----hhhhh--HhHH----------------HHHHHhhhhhhHHHHHHHHHHhhhccHHHHH
Q 018324 299 -----NQYVE--ENER----------------LRAILGEWSTRAAKLERALEVERMSNIELQK 338 (358)
Q Consensus 299 -----~q~~e--En~r----------------lRa~l~Ews~raakle~ale~er~~~~~~~~ 338 (358)
.-... |.|| ||.-|+-|.++|.||+.-|+.|+.-.-||..
T Consensus 1038 ~e~~~~~~e~~l~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~ 1100 (1320)
T PLN03188 1038 PESTDESPEKKLEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKE 1100 (1320)
T ss_pred ccccccchhHHHHHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 00111 3444 6888999999999999999999998877754
No 8
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=90.55 E-value=12 Score=35.91 Aligned_cols=29 Identities=7% Similarity=-0.040 Sum_probs=20.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhHHHh
Q 018324 73 LLCSCGVILLA-LTGIFQQYFVYQVQKIRL 101 (358)
Q Consensus 73 lL~y~~v~LWl-Lt~l~d~yvq~qH~KlRl 101 (358)
+.+..=.++|. +.+.+|+++....+|.+.
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~ 75 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDG 75 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 55555557775 467799999998776555
No 9
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.03 E-value=14 Score=33.15 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCC
Q 018324 210 EQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGST 247 (358)
Q Consensus 210 KQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t 247 (358)
++-+.|.-++--|..|-..+-.++.++.+.+..++|-+
T Consensus 3 ~k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~ 40 (177)
T PF13870_consen 3 QKRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLH 40 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 34556777788888889999999999999998888765
No 10
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=89.24 E-value=7.7 Score=38.15 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=75.1
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHH
Q 018324 213 ALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVL 292 (358)
Q Consensus 213 DLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~ 292 (358)
+-+.|+.+....+.+++-..+..+..|++.....+|+-.... =.+.+..+.+++.+++.|+...++-..+.-.++.
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~----~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~ 245 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSA----QLSLISTLEGELIRVQAQLAQLRSITPEQNPQVP 245 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchH
Confidence 456788888888888999999999999998655565443211 1123455666666666777666665555444443
Q ss_pred H----HHhhhhhhhhHhHHHHH----HHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 293 R----VRNTNNQYVEENERLRA----ILGEWSTRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 293 ~----~r~~n~q~~eEn~rlRa----~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
. +.....|--+|+.++-+ .+..-..+-+.|++..|.-+-.-..+.+++.+.|-
T Consensus 246 ~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~ 306 (362)
T TIGR01010 246 SLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRV 306 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34444555555555543 23333444556666666555444444444444443
No 11
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.66 E-value=21 Score=33.39 Aligned_cols=114 Identities=24% Similarity=0.374 Sum_probs=79.0
Q ss_pred hhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhH
Q 018324 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAE 286 (358)
Q Consensus 207 LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~e 286 (358)
|.|.|.-+-+.-+| |..|-+=-.+-...+++|+.+ +-|+.-+++.-..|+|++-..+...+...+.+-.-|-+
T Consensus 21 l~elq~~l~~l~~E-Nk~Lk~lq~Rq~kAL~k~e~~------e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~ 93 (194)
T PF15619_consen 21 LAELQRKLQELRKE-NKTLKQLQKRQEKALQKYEDT------EAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD 93 (194)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333 233332223334469999987 33677789999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhhhh---------------hHhHHHHHHHhhhhhhHHHHHHHHH
Q 018324 287 REAEVLRVRNTNNQYV---------------EENERLRAILGEWSTRAAKLERALE 327 (358)
Q Consensus 287 r~~e~~~~r~~n~q~~---------------eEn~rlRa~l~Ews~raakle~ale 327 (358)
.|.++++.+..+..+. .+-+.+.+.|.+--.+...||+-+|
T Consensus 94 ~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 94 KDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888776522 2334556667777777777776654
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=86.93 E-value=12 Score=40.98 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=17.0
Q ss_pred hHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHH
Q 018324 287 REAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALE 327 (358)
Q Consensus 287 r~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale 327 (358)
-..++..+...-....++.+.++..+.++..+...++..++
T Consensus 864 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 904 (1179)
T TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904 (1179)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444444433
No 13
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=86.83 E-value=5.5 Score=41.77 Aligned_cols=63 Identities=32% Similarity=0.368 Sum_probs=54.2
Q ss_pred hhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHH
Q 018324 249 QVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAI 311 (358)
Q Consensus 249 qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~ 311 (358)
-.|+.|-||-=++---.++|++..+..|-+.-++-+.+++.|++++...|.|--||--|.++.
T Consensus 15 ~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~ 77 (459)
T KOG0288|consen 15 LIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEAT 77 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888888777777799999999999999999999999999999999999977776665443
No 14
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=86.22 E-value=22 Score=38.80 Aligned_cols=128 Identities=15% Similarity=0.211 Sum_probs=68.0
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHH
Q 018324 214 LLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLR 293 (358)
Q Consensus 214 LIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~ 293 (358)
-++|+.+....+.+++-..+.++.+|++..+-.++..+....+. ++..+.+++.+++.+.........++--+++.
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~----~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~ 343 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLE----QIVNVDNQLNELTFREAEISQLYKKDHPTYRA 343 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence 47899999999999999999999999998544444444333322 23344444444444444334444444444444
Q ss_pred HHhhhhhhhhHhHHHHH---HHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 294 VRNTNNQYVEENERLRA---ILGEWSTRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 294 ~r~~n~q~~eEn~rlRa---~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
++..-++=-.+.+++++ .+.+.......|||..+.-|--=..|-++..+.+-
T Consensus 344 l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i 398 (726)
T PRK09841 344 LLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSI 398 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43322211112222222 23344555556666666655444444444444433
No 15
>PRK11519 tyrosine kinase; Provisional
Probab=84.36 E-value=31 Score=37.58 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhh
Q 018324 212 MALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVD 251 (358)
Q Consensus 212 ADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvd 251 (358)
..-+.|+.+....+.+++=..+..+.+|++...-.+++.+
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~e 305 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLE 305 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHH
Confidence 3678899999999999999999999999987443344433
No 16
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=84.28 E-value=21 Score=37.90 Aligned_cols=79 Identities=29% Similarity=0.363 Sum_probs=58.6
Q ss_pred HHhhhHHHHHhHHHHHHHHHhh---hhHhHH---HHHHHHhhh------------------------------------h
Q 018324 262 ELRTLSAEMNQLQSELRLARSF---VAEREA---EVLRVRNTN------------------------------------N 299 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~l---i~er~~---e~~~~r~~n------------------------------------~ 299 (358)
|+-.-.=|+.++|.||...|.. ++||+. |||.+|.-= .
T Consensus 196 evl~~~~E~k~~qeel~~~~~~~~d~~EkE~Ll~EIq~Lk~qL~~~~~ss~s~~~~~~sll~~s~~~~~~~~~~~~~~~~ 275 (488)
T PF06548_consen 196 EVLKEKIELKRVQEELEEYRNFSFDMGEKEVLLEEIQDLKSQLQYYTDSSMSTDRLRSSLLQRSYQLRPSAIPESGDENA 275 (488)
T ss_pred HHHhhHhHHHHHHHHHHhccccccCcchHHHHHHHHHHHHHHHHhccccccccccccccHHhhhhccCCCCCcccCCCch
Confidence 5555566899999999999999 999986 566555311 1
Q ss_pred hhhhH----------------hHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHH
Q 018324 300 QYVEE----------------NERLRAILGEWSTRAAKLERALEVERMSNIELQKKI 340 (358)
Q Consensus 300 q~~eE----------------n~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~ 340 (358)
-+.=| .+-||.-|+--..+|.|+|.-|+.|+..+-||..-+
T Consensus 276 ~~~le~er~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al 332 (488)
T PF06548_consen 276 EEELEQERQRWTEAESKWISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDAL 332 (488)
T ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 12222 345778888888999999999999999999887644
No 17
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=82.99 E-value=6.9 Score=38.08 Aligned_cols=77 Identities=19% Similarity=0.382 Sum_probs=57.4
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHh---hhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 018324 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELR---TLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (358)
Q Consensus 218 LkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelR---a~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (358)
.-|..-.++|+|...-....+-+-...|-| ||+-.||.+++.|.+ .++-|-...+.+.+.-++....||++||++
T Consensus 16 ~~dDlE~i~kelie~l~~~~~qk~l~~gE~--v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqL 93 (272)
T KOG4552|consen 16 SADDLEHIVKELIETLINRDKQKMLKNGET--VNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQL 93 (272)
T ss_pred HhhHHHHHHHHHHHHHHhhhHHHHHhcchH--HHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345556677777765544433333345544 689999999999998 566777778889999999999999999998
Q ss_pred Hh
Q 018324 295 RN 296 (358)
Q Consensus 295 r~ 296 (358)
..
T Consensus 94 qk 95 (272)
T KOG4552|consen 94 QK 95 (272)
T ss_pred HH
Confidence 64
No 18
>PF14802 TMEM192: TMEM192 family
Probab=82.94 E-value=11 Score=36.25 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=30.0
Q ss_pred hhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhh
Q 018324 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKY 239 (358)
Q Consensus 207 LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~ky 239 (358)
-.+.+.|++++|.|-.++|.++..+||+++.++
T Consensus 203 ~~~~~eellEkQadlI~yLk~hn~~L~~ril~l 235 (236)
T PF14802_consen 203 DGSSLEELLEKQADLIRYLKEHNARLSRRILAL 235 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445999999999999999999999999998765
No 19
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=82.85 E-value=2.5 Score=45.77 Aligned_cols=69 Identities=22% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHhhhhHhHHHHHHHHhhhhhhh---hHhHHHHHHHhhhhhhHHH---HHHHHHH--hhhcc-HHHHHHHHHhhhc
Q 018324 278 RLARSFVAEREAEVLRVRNTNNQYV---EENERLRAILGEWSTRAAK---LERALEV--ERMSN-IELQKKISTRRNQ 346 (358)
Q Consensus 278 ~~ar~li~er~~e~~~~r~~n~q~~---eEn~rlRa~l~Ews~raak---le~ale~--er~~~-~~~~~~~~~~r~~ 346 (358)
.-.+.-+.+-+.++..+|..|.... +|...||.-||+|..+|.| +|..+|. +++.. -++++++..|+.+
T Consensus 263 ~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~ 340 (713)
T PF05622_consen 263 DDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEED 340 (713)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556677889999999998766 6778899999999886666 5555543 23332 2455566666553
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.82 E-value=10 Score=35.82 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=33.7
Q ss_pred hhHHHHHhHHHHHHHHHhhhhHhHHHHHHH-Hhhhhh---hhhHhHHHHHHHhhhhhhHHHHHHHHH
Q 018324 265 TLSAEMNQLQSELRLARSFVAEREAEVLRV-RNTNNQ---YVEENERLRAILGEWSTRAAKLERALE 327 (358)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~-r~~n~q---~~eEn~rlRa~l~Ews~raakle~ale 327 (358)
++.+|+..++++|.-++.-.++|.+|+++- -..|++ =.+||++|+..|.+=......||..++
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555666665552 222222 345777887777775555555554443
No 21
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=81.85 E-value=20 Score=36.65 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCc
Q 018324 212 MALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTP 248 (358)
Q Consensus 212 ADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~ 248 (358)
.+.+.|+.+.+..+.+++-..+..+.+|++......|
T Consensus 160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~ 196 (498)
T TIGR03007 160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILP 196 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 3578899999999999999999999999876443333
No 22
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=81.11 E-value=3.9 Score=43.21 Aligned_cols=68 Identities=24% Similarity=0.283 Sum_probs=37.6
Q ss_pred hhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018324 260 DQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVER 330 (358)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er 330 (358)
..|++++-+|=|+=+.-+|.-=+-..+=..+++.+..-|.+..+||+|||+-..-=.. +++.|++.||
T Consensus 44 pee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~---~i~~av~~~~ 111 (472)
T TIGR03752 44 PEELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ---QIQQAVQSET 111 (472)
T ss_pred cchhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHhhh
Confidence 3344444433333333333333333333445667788899999999999985443333 3445555544
No 23
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.96 E-value=40 Score=36.52 Aligned_cols=132 Identities=19% Similarity=0.242 Sum_probs=79.3
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhhhhcccCC--CCCchhhHHhhhhhc-------hhHHhhhHHHHHhHHHHH--------
Q 018324 215 LQYQRENLHFLSEEILRLQECLSKYEQSDD--GSTPQVDLAHLLAAR-------DQELRTLSAEMNQLQSEL-------- 277 (358)
Q Consensus 215 IrYLkdHNa~LSkrIL~Lq~~l~kye~~~~--g~t~qvdl~h~la~r-------~qelRa~~Ae~~q~~~el-------- 277 (358)
.|||...|+.|...|=-|+..+++--..-. =.++-.++-.+++.- ++|++.+..|.+.+..-+
T Consensus 58 VR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~ 137 (546)
T KOG0977|consen 58 VRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERR 137 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 478888888888888777766632111100 001222444444433 234455555554443322
Q ss_pred ------HHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhhc
Q 018324 278 ------RLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQ 346 (358)
Q Consensus 278 ------~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~~ 346 (358)
+...+-|++-++|+..+..-...-.+|..||++-.+---.--+++=..|++|.+.-.+++-++.+|...
T Consensus 138 ~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Llee 212 (546)
T KOG0977|consen 138 GAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEE 212 (546)
T ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 222445556677777777777777777777777666555555566667888998888888887777653
No 24
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=80.83 E-value=23 Score=33.89 Aligned_cols=106 Identities=20% Similarity=0.167 Sum_probs=55.9
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 018324 215 LQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (358)
Q Consensus 215 IrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (358)
.++|.+.|..|..+|-.+.... ...++........-+..=.+.+-.++.|..+++.|+..++..+++=.......
T Consensus 20 Vr~LE~~N~~Le~~i~~~~~~~-----~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 20 VRFLEQENKRLESEIEELREKK-----GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHhcc-----cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 5778888888877776665543 00000011111111111123344667777777777777777776665555555
Q ss_pred HhhhhhhhhHhHHHHHHHhhhhhhHHHHHHH
Q 018324 295 RNTNNQYVEENERLRAILGEWSTRAAKLERA 325 (358)
Q Consensus 295 r~~n~q~~eEn~rlRa~l~Ews~raakle~a 325 (358)
...+..-.+|...||..+++=...-..||..
T Consensus 95 ~~~~~~le~el~~lrk~ld~~~~~r~~le~~ 125 (312)
T PF00038_consen 95 LAERKDLEEELESLRKDLDEETLARVDLENQ 125 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH
Confidence 5555666667777776666544444444443
No 25
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=76.45 E-value=36 Score=29.81 Aligned_cols=76 Identities=25% Similarity=0.245 Sum_probs=42.8
Q ss_pred HHhhhhhchhHHh-------hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHH---HHHHhhhhhhHHH
Q 018324 252 LAHLLAARDQELR-------TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERL---RAILGEWSTRAAK 321 (358)
Q Consensus 252 l~h~la~r~qelR-------a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rl---Ra~l~Ews~raak 321 (358)
+..-+-.+|.|+- .+.++.+++..|+-..-...++-.+...++.....++-+=+.|. --+|||.+-+..-
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veE 100 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEE 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3455556666553 55555555555555555555555555555555556555555443 3455677766666
Q ss_pred HHHHHH
Q 018324 322 LERALE 327 (358)
Q Consensus 322 le~ale 327 (358)
|+.-++
T Consensus 101 L~~Dv~ 106 (120)
T PF12325_consen 101 LRADVQ 106 (120)
T ss_pred HHHHHH
Confidence 655443
No 26
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.33 E-value=57 Score=29.13 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHh
Q 018324 225 LSEEILRLQECL 236 (358)
Q Consensus 225 LSkrIL~Lq~~l 236 (358)
+.+++-.++.++
T Consensus 100 l~~~~~~~~~~l 111 (191)
T PF04156_consen 100 LQERIQELESEL 111 (191)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 27
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=76.07 E-value=15 Score=41.02 Aligned_cols=96 Identities=30% Similarity=0.349 Sum_probs=76.5
Q ss_pred HHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHH-HHHhhhhhh---HHHHHHHHH
Q 018324 252 LAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLR-AILGEWSTR---AAKLERALE 327 (358)
Q Consensus 252 l~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlR-a~l~Ews~r---aakle~ale 327 (358)
=++.++.|++.|.++.+......+.||+=-.-++|||+...+-. .--+.-.|+=+|| ....+|..| .++-|||--
T Consensus 535 Re~a~a~Re~TLAahEaa~AE~E~aLRLREeA~aER~~~~~~aE-aaa~Rlae~L~lREeA~~~~~~r~le~araeraa~ 613 (828)
T PF04094_consen 535 RERAAAQREATLAAHEAAAAEEESALRLREEALAERDRALNRAE-AAAQRLAEQLALREEAVEERERRHLESARAERAAM 613 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhccHHHHHHHHHhhhhhhHHHHHHH
Confidence 37889999999998888878888999999999999999986544 4445566777777 445566555 567888888
Q ss_pred HhhhccHHHHHHHHHhhhcCC
Q 018324 328 VERMSNIELQKKISTRRNQHG 348 (358)
Q Consensus 328 ~er~~~~~~~~~~~~~r~~~~ 348 (358)
+.|.+.+|-|.|-..-|.+..
T Consensus 614 ~~ra~eleArekel~a~~~~g 634 (828)
T PF04094_consen 614 AARASELEAREKELAARGQSG 634 (828)
T ss_pred HHHHHHHHHHHHhhccccccC
Confidence 999999999999888888863
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=75.51 E-value=92 Score=33.88 Aligned_cols=86 Identities=24% Similarity=0.343 Sum_probs=58.1
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhH---HH-HHHHHhhhhhhhhHhHHHHH-------HHhhhhhhHHHHHHHHHHhh
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAERE---AE-VLRVRNTNNQYVEENERLRA-------ILGEWSTRAAKLERALEVER 330 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~---~e-~~~~r~~n~q~~eEn~rlRa-------~l~Ews~raakle~ale~er 330 (358)
||+++.+-.|...+||..||-.-+.-. ++ ...+|..+-|+..|-+.|.- -+.+=+.+.-++|..|-.||
T Consensus 312 EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer 391 (546)
T PF07888_consen 312 ELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEER 391 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888889999998886555543 22 22567777676666555543 34455556666677777788
Q ss_pred hccHHHHHHHHHhhhcC
Q 018324 331 MSNIELQKKISTRRNQH 347 (358)
Q Consensus 331 ~~~~~~~~~~~~~r~~~ 347 (358)
+.+.-|++++.+.+.+.
T Consensus 392 ~E~qkL~~ql~ke~D~n 408 (546)
T PF07888_consen 392 MERQKLEKQLGKEKDCN 408 (546)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 88888888887665543
No 29
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=74.99 E-value=72 Score=29.69 Aligned_cols=131 Identities=20% Similarity=0.165 Sum_probs=68.6
Q ss_pred hhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhH
Q 018324 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAE 286 (358)
Q Consensus 207 LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~e 286 (358)
|.+++.++.+=. ..+..|.++|-..=+.-+.. .-.+-..+..-.......+..+..++.+++.++...|..|++
T Consensus 22 L~~~~~~l~~~~-~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 22 LLELRSELQQLK-EENEELRRRIEEILESDSNG-----QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766543 34445555444332211000 001111222222333334445666666666666666666666
Q ss_pred hHHHHHHHHhh-------hhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHh
Q 018324 287 REAEVLRVRNT-------NNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTR 343 (358)
Q Consensus 287 r~~e~~~~r~~-------n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~ 343 (358)
+..+++.-+.. .....+..+.+...+.++..+-.+++..+..-|..-+..-.+|--.
T Consensus 96 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 96 LRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 66665555442 2334455555677777777777777777777776655544444444
No 30
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=73.77 E-value=22 Score=36.68 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=63.5
Q ss_pred HHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhh-------hHHHHHH
Q 018324 252 LAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWST-------RAAKLER 324 (358)
Q Consensus 252 l~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~-------raakle~ 324 (358)
.-..+..|.+|-..|.-.-+++-.||-.+|+.+..-..++|++..+=.+.-|||.+|-.-|++-+. +++.|-|
T Consensus 90 i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr 169 (401)
T PF06785_consen 90 IRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNR 169 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Confidence 344566777777777777778889999999999999999999999999999999999988876554 5667755
Q ss_pred HHHHhhh
Q 018324 325 ALEVERM 331 (358)
Q Consensus 325 ale~er~ 331 (358)
.|-.++-
T Consensus 170 ELaE~la 176 (401)
T PF06785_consen 170 ELAEALA 176 (401)
T ss_pred HHHHHHH
Confidence 5544443
No 31
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.17 E-value=59 Score=34.77 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=59.6
Q ss_pred hhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhcc
Q 018324 254 HLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSN 333 (358)
Q Consensus 254 h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~ 333 (358)
+-+..+-+|++++.-+.+-+.++-+..-..+.+++..+.++-..-.---|||.-|+.-++-|.....++|..++.++-+-
T Consensus 354 ~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~ 433 (493)
T KOG0804|consen 354 QYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSK 433 (493)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556777777777777777777777777777666666555444559999999999999999999999999887653
No 32
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=73.14 E-value=95 Score=30.24 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=16.0
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (358)
++..+.+++.++++++..++..++.-+.++.+.
T Consensus 152 ~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~ 184 (423)
T TIGR01843 152 QIKQLEAELAGLQAQLQALRQQLEVISEELEAR 184 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555554444444433
No 33
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=72.22 E-value=70 Score=30.61 Aligned_cols=106 Identities=26% Similarity=0.304 Sum_probs=73.8
Q ss_pred HHHHHHHHhhhhcccCCCCCchh-hHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhh------
Q 018324 228 EILRLQECLSKYEQSDDGSTPQV-DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ------ 300 (358)
Q Consensus 228 rIL~Lq~~l~kye~~~~g~t~qv-dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q------ 300 (358)
+|+.|..++..-...-+++.++. ++...+-++..|+-....|+.+..+|..+=|-=++..++|+..+|..=..
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~ 111 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKR 111 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchh
Confidence 68899998876665556665555 56777778888887777777777777777777777777777776653222
Q ss_pred ------------------------hhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhcc
Q 018324 301 ------------------------YVEENERLRAILGEWSTRAAKLERALEVERMSN 333 (358)
Q Consensus 301 ------------------------~~eEn~rlRa~l~Ews~raakle~ale~er~~~ 333 (358)
-..|-+||||.|..=..+....-...|.||..=
T Consensus 112 ~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W 168 (202)
T PF06818_consen 112 QCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTW 168 (202)
T ss_pred hhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 123667888888776666666666777777663
No 34
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=71.00 E-value=90 Score=36.48 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhH-HhhhhhchhHHhhhHHHHHhHHH
Q 018324 212 MALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDL-AHLLAARDQELRTLSAEMNQLQS 275 (358)
Q Consensus 212 ADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl-~h~la~r~qelRa~~Ae~~q~~~ 275 (358)
.|-|++|+.-...|-++++.++.++++++..-+.....++- .--.-..+..++..-+||++++.
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46799999999999999999999999999875444322221 22233344456666677776666
No 35
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=70.35 E-value=31 Score=28.28 Aligned_cols=19 Identities=42% Similarity=0.522 Sum_probs=14.8
Q ss_pred hhhhhhhhHhHHHHHHHhh
Q 018324 296 NTNNQYVEENERLRAILGE 314 (358)
Q Consensus 296 ~~n~q~~eEn~rlRa~l~E 314 (358)
.+..+|.+|-.|||+.|+.
T Consensus 57 kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 57 KMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3567799999999988864
No 36
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=69.35 E-value=1e+02 Score=29.11 Aligned_cols=48 Identities=10% Similarity=-0.038 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhHHHh----hhHHHHHHHhhcccccchhhhhHHHHHHHH
Q 018324 84 LTGIFQQYFVYQVQKIRL----QGYYSFSQKLKHIVRLPFAITAYGTAAMLL 131 (358)
Q Consensus 84 Lt~l~d~yvq~qH~KlRl----~GYl~FYR~Tr~lkRlPl~IvSlGNa~LLL 131 (358)
+++.+....++.|++... ..-..+|+++.+--..+..+.+....+.++
T Consensus 64 ~~~~~~~~~~k~~~~~~~~~deD~~~~~~~~~~r~~~~~~i~~~i~~i~~~~ 115 (248)
T PF11368_consen 64 LTFYFIYKSRKYKKLYEEEEDEDENEEYYRKMNRKLEYATIFFNISIIISFL 115 (248)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555565554 355668888877655554444444433333
No 37
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=69.29 E-value=16 Score=27.85 Aligned_cols=45 Identities=27% Similarity=0.423 Sum_probs=29.4
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHH
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENER 307 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~r 307 (358)
+...+.+|+++++.++...+...++-+.+++.++. |..|+|+-.|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~-~~~~ie~~AR 62 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKN-DPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 34456667777777777777777777777777644 5666666554
No 38
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.99 E-value=86 Score=35.94 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.8
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHh
Q 018324 213 ALLQYQRENLHFLSEEILRLQECL 236 (358)
Q Consensus 213 DLIrYLkdHNa~LSkrIL~Lq~~l 236 (358)
+=|.|++.|+..|..|+-.|+..+
T Consensus 430 e~iv~~nak~~ql~~eletLn~k~ 453 (1118)
T KOG1029|consen 430 EWIVYLNAKKKQLQQELETLNFKL 453 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999999999999998877
No 39
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=68.63 E-value=30 Score=38.20 Aligned_cols=84 Identities=24% Similarity=0.325 Sum_probs=47.5
Q ss_pred hhhHHHHHhHHHHHHHHHhhhhHhHH--------------HHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHh
Q 018324 264 RTLSAEMNQLQSELRLARSFVAEREA--------------EVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVE 329 (358)
Q Consensus 264 Ra~~Ae~~q~~~el~~ar~li~er~~--------------e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~e 329 (358)
..|.+|+..|++||+..|..=.|=.+ |++++|-.|++-.....-|=..-..=..=.+-||+.|..|
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666655444333 4555555554433332222211111111134578888888
Q ss_pred hhccHHHHHHHHHhhhcC
Q 018324 330 RMSNIELQKKISTRRNQH 347 (358)
Q Consensus 330 r~~~~~~~~~~~~~r~~~ 347 (358)
|..-.++.|++.+.|.+.
T Consensus 501 ~~~R~~lEkQL~eErk~r 518 (697)
T PF09726_consen 501 RRQRASLEKQLQEERKAR 518 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888888765
No 40
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.56 E-value=38 Score=35.04 Aligned_cols=73 Identities=22% Similarity=0.244 Sum_probs=62.1
Q ss_pred HHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhhcCC
Q 018324 276 ELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHG 348 (358)
Q Consensus 276 el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~~~~ 348 (358)
-||.-|.-+.||+-|.++++..|+|-..+-.+.|..+-.=.++..+||-.+-.-+=-|.-||-++..+-++-+
T Consensus 86 glr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~ 158 (401)
T PF06785_consen 86 GLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECG 158 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 4777888899999999999999999999999999998888888899998877777777777777777665553
No 41
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=68.50 E-value=31 Score=31.58 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=19.4
Q ss_pred hhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 018324 256 LAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (358)
Q Consensus 256 la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (358)
+...+..++.+.++..+++.+++.-...|.|++..++.+
T Consensus 111 ~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l 149 (194)
T PF08614_consen 111 LSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL 149 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555544443
No 42
>PRK02224 chromosome segregation protein; Provisional
Probab=68.30 E-value=85 Score=34.44 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=15.1
Q ss_pred hhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhc
Q 018324 299 NQYVEENERLRAILGEWSTRAAKLERALEVERMS 332 (358)
Q Consensus 299 ~q~~eEn~rlRa~l~Ews~raakle~ale~er~~ 332 (358)
+.+.++++-+..-|.+-..|-+.||..+..++..
T Consensus 616 ~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e 649 (880)
T PRK02224 616 EALAELNDERRERLAEKRERKRELEAEFDEARIE 649 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 3333333344444444444445554444444443
No 43
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.23 E-value=1.2e+02 Score=29.50 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=21.7
Q ss_pred CCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHH
Q 018324 244 DGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVL 292 (358)
Q Consensus 244 ~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~ 292 (358)
.|..++.++. .-..++..+.++.+.+++++..+++.+++-.+++.
T Consensus 190 ~g~is~~~~~----~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 234 (423)
T TIGR01843 190 KGLVSRLELL----ELERERAEAQGELGRLEAELEVLKRQIDELQLERQ 234 (423)
T ss_pred cCCCCHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 12234444555555555555555555555444444
No 44
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=68.10 E-value=91 Score=27.94 Aligned_cols=92 Identities=24% Similarity=0.313 Sum_probs=60.1
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhh
Q 018324 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNT 297 (358)
Q Consensus 218 LkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~ 297 (358)
|+-.|..|+++|=.=...|.+-+.. .| .-.|.|+---.-+-.+.++...+..++......+++-+.++.++...
T Consensus 47 Lkien~~l~~kIeERn~eL~~Lk~~-~~-----~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~ 120 (177)
T PF13870_consen 47 LKIENQQLNEKIEERNKELLKLKKK-IG-----KTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKE 120 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666664444455444433 12 22456665555566788888888888888888888888888888887
Q ss_pred hhhhhhHhHHHHHHHhhh
Q 018324 298 NNQYVEENERLRAILGEW 315 (358)
Q Consensus 298 n~q~~eEn~rlRa~l~Ew 315 (358)
.+.+-..|.+|+.-.|--
T Consensus 121 r~k~~~~~~~l~~~~~~~ 138 (177)
T PF13870_consen 121 RDKLRKQNKKLRQQGGLL 138 (177)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 777766776666554443
No 45
>PRK11637 AmiB activator; Provisional
Probab=67.93 E-value=1.3e+02 Score=30.66 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=48.7
Q ss_pred hhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhH
Q 018324 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAE 286 (358)
Q Consensus 207 LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~e 286 (358)
+.+.+.++|..+++.-..|....-.|...+ -++.-+++..+++...|.+++++-+.++..-.+.+.+
T Consensus 164 i~~~d~~~l~~l~~~~~~L~~~k~~le~~~-------------~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~ 230 (428)
T PRK11637 164 LNQARQETIAELKQTREELAAQKAELEEKQ-------------SQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQK 230 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554444444433 2445555556666666666666655556555666666
Q ss_pred hHHHHHHHHhhhhhhhhHhHHHHHHHhh
Q 018324 287 REAEVLRVRNTNNQYVEENERLRAILGE 314 (358)
Q Consensus 287 r~~e~~~~r~~n~q~~eEn~rlRa~l~E 314 (358)
+++++.+++. +..+|.+.|.+
T Consensus 231 ~~~~l~~l~~-------~~~~L~~~I~~ 251 (428)
T PRK11637 231 DQQQLSELRA-------NESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHH
Confidence 6666655543 44455555543
No 46
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=67.92 E-value=1.5e+02 Score=34.44 Aligned_cols=63 Identities=25% Similarity=0.338 Sum_probs=31.4
Q ss_pred hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHH
Q 018324 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALE 327 (358)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale 327 (358)
++..+++.++.++..++..++.=..++......-+....|-+.++.-+.+|..+.+-++..++
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~ 852 (1163)
T COG1196 790 ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELE 852 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344455555555555554444444444444333344455555555555555555555544444
No 47
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=67.60 E-value=76 Score=30.59 Aligned_cols=59 Identities=25% Similarity=0.367 Sum_probs=38.6
Q ss_pred Hhhhhhchh---HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHH
Q 018324 253 AHLLAARDQ---ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAI 311 (358)
Q Consensus 253 ~h~la~r~q---elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~ 311 (358)
..|+..|.. |||-+-+..|.+.+.++-+++.-.++...|+++...=..-.+|-+++|..
T Consensus 42 ~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 42 EELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555443 77888888888888888888887777777776654333344444555444
No 48
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=67.21 E-value=11 Score=33.52 Aligned_cols=74 Identities=31% Similarity=0.480 Sum_probs=42.8
Q ss_pred HHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhh----HHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhH
Q 018324 229 ILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTL----SAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEE 304 (358)
Q Consensus 229 IL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~----~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eE 304 (358)
+=+|++-...|.+...+..|++-. +++.-+|.|.+ -+-++.+++ .+..||+||
T Consensus 54 L~~Ls~LK~~y~~~~~~~~~~~~~---l~a~~~e~qsli~~yE~~~~kLe~-------e~~~Kdsei------------- 110 (131)
T PF04859_consen 54 LRRLSELKRRYRKKQSDPSPQVAR---LAAEIQEQQSLIKTYEIVVKKLEA-------ELRAKDSEI------------- 110 (131)
T ss_pred HHHHHHHHHHHHcCCCCCCccccc---cccchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-------------
Confidence 344555556677775555566533 44444555433 333333333 344566665
Q ss_pred hHHHHHHHhhhhhhHHHHHHHH
Q 018324 305 NERLRAILGEWSTRAAKLERAL 326 (358)
Q Consensus 305 n~rlRa~l~Ews~raakle~al 326 (358)
.+||.-|+|=...+.+||.+|
T Consensus 111 -~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 111 -DRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred -HHHHHHHHHHHHHHHHhhccC
Confidence 567778888888888888654
No 49
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=67.17 E-value=45 Score=35.55 Aligned_cols=47 Identities=9% Similarity=0.102 Sum_probs=27.1
Q ss_pred hhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 299 NQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 299 ~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
.+..+|-+.+|+.+.+=..+.+.+|..||.+|...-|..+.+.+.+.
T Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~ 109 (475)
T PRK10361 63 ELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQ 109 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555556666777777777766665555554443
No 50
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.16 E-value=34 Score=37.68 Aligned_cols=73 Identities=27% Similarity=0.322 Sum_probs=34.8
Q ss_pred hhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhh----hhhHhHHHHHHHhhhhhhHHHHHHHHHH-hhhccHHHH
Q 018324 264 RTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ----YVEENERLRAILGEWSTRAAKLERALEV-ERMSNIELQ 337 (358)
Q Consensus 264 Ra~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q----~~eEn~rlRa~l~Ews~raakle~ale~-er~~~~~~~ 337 (358)
+.|.+++.+++.|+-.-++.+++=+.++. ...-.+. --+++++|+.-|.|-+.+...||+.|+. ++|-.+|++
T Consensus 439 ~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~s 516 (652)
T COG2433 439 SELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELS 516 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 45555555555555444444443333322 1111111 2345666666666666666666666653 224444443
No 51
>PRK02224 chromosome segregation protein; Provisional
Probab=66.79 E-value=1.1e+02 Score=33.72 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=11.1
Q ss_pred HHHHHHHhhhccHHHHHHHHHhhhcC
Q 018324 322 LERALEVERMSNIELQKKISTRRNQH 347 (358)
Q Consensus 322 le~ale~er~~~~~~~~~~~~~r~~~ 347 (358)
++..++..+-+--.+++++..++.+.
T Consensus 375 ~~~~l~~~~~~l~~l~~el~el~~~l 400 (880)
T PRK02224 375 AREAVEDRREEIEELEEEIEELRERF 400 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333334444444444433
No 52
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=66.11 E-value=23 Score=31.00 Aligned_cols=80 Identities=28% Similarity=0.342 Sum_probs=52.7
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCc-hhhH---HhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHH
Q 018324 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTP-QVDL---AHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVL 292 (358)
Q Consensus 217 YLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~-qvdl---~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~ 292 (358)
.|.-..+.+--++-.++.++++-+..-|.-.. -|.+ ..-+.+-..++..+.+++..++.....+--+++||+-++.
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 66666666666777777777666555433321 2222 1222334456667888888888899999999999988877
Q ss_pred HHHh
Q 018324 293 RVRN 296 (358)
Q Consensus 293 ~~r~ 296 (358)
.+|.
T Consensus 100 EL~~ 103 (120)
T PF12325_consen 100 ELRA 103 (120)
T ss_pred HHHH
Confidence 7664
No 53
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=63.85 E-value=16 Score=35.69 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=12.0
Q ss_pred hhhHhHHHHHHHhh
Q 018324 301 YVEENERLRAILGE 314 (358)
Q Consensus 301 ~~eEn~rlRa~l~E 314 (358)
+.+||+|||+.|+-
T Consensus 96 l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 96 LKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHhcC
Confidence 78899999998864
No 54
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=63.58 E-value=64 Score=35.13 Aligned_cols=89 Identities=20% Similarity=0.286 Sum_probs=56.3
Q ss_pred hhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHH----------HhhhhhhHHHHHHH
Q 018324 256 LAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAI----------LGEWSTRAAKLERA 325 (358)
Q Consensus 256 la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~----------l~Ews~raakle~a 325 (358)
...+++|+..+..+++.+..++....+.++.-..++.++.....+...+++++-+. |.+=..--+|||.-
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~ 402 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQAL 402 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44667778888888888887777777777777777777777766666666655433 33334445667766
Q ss_pred HHHhhhccHHHHHHHHHhh
Q 018324 326 LEVERMSNIELQKKISTRR 344 (358)
Q Consensus 326 le~er~~~~~~~~~~~~~r 344 (358)
.++..-.=.+|+.+-.+-|
T Consensus 403 v~~s~~rl~~L~~qWe~~R 421 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHR 421 (594)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6654444444444444333
No 55
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=63.50 E-value=1.5e+02 Score=32.30 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=27.5
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHhhhhcccCCC
Q 018324 214 LLQYQRENLHFLSEEILRLQECLSKYEQSDDG 245 (358)
Q Consensus 214 LIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g 245 (358)
-++||.+....+.+++-.-..++.+|++..+.
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l 226 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVAAYRAQSDL 226 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999987443
No 56
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=63.46 E-value=53 Score=34.26 Aligned_cols=37 Identities=24% Similarity=0.117 Sum_probs=21.1
Q ss_pred HHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHH
Q 018324 290 EVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERAL 326 (358)
Q Consensus 290 e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~al 326 (358)
.+..+....+.|-++...+++.+.+...+-++++..|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 161 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQL 161 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555554444444444
No 57
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=61.89 E-value=1.6e+02 Score=34.30 Aligned_cols=134 Identities=19% Similarity=0.255 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh--hHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHh
Q 018324 210 EQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV--DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAER 287 (358)
Q Consensus 210 KQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qv--dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er 287 (358)
.+++-+.-.-..+..+-+++-.|...+..++......-|+. .+.+....+++.-+......+.+..++..+.+-|+.-
T Consensus 246 ~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~ 325 (1201)
T PF12128_consen 246 PEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARI 325 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555566666666666555555554 3355666666666666666677777778888888888
Q ss_pred HHHHHHHHhhhhhhh----hHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHh
Q 018324 288 EAEVLRVRNTNNQYV----EENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTR 343 (358)
Q Consensus 288 ~~e~~~~r~~n~q~~----eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~ 343 (358)
.+++..+..--..|. ++-...=.-+++|..+.+.++..+..===+..++..++.++
T Consensus 326 ~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~ 385 (1201)
T PF12128_consen 326 KSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKL 385 (1201)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777763 33444455667777777666665544333333444444443
No 58
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=61.38 E-value=65 Score=27.03 Aligned_cols=57 Identities=35% Similarity=0.443 Sum_probs=35.2
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhh--HhHHHHHHH
Q 018324 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVA--EREAEVLRV 294 (358)
Q Consensus 217 YLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~--er~~e~~~~ 294 (358)
|+.+.|..|.++|-.|+.++ ++. .|+=-.+.|-.+++.|++.-+++-. ||+..++.|
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qv---e~n------------------Pevtr~A~EN~rL~ee~rrl~~f~~~gerE~l~~ei 79 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQV---EHN------------------PEVTRFAMENIRLREELRRLQSFYVEGEREMLLQEI 79 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HhC------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55666677777777777766 222 3444456677777777777777776 444434443
No 59
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=59.68 E-value=73 Score=34.88 Aligned_cols=38 Identities=32% Similarity=0.318 Sum_probs=19.7
Q ss_pred HHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhh
Q 018324 294 VRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERM 331 (358)
Q Consensus 294 ~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~ 331 (358)
+..-....+++|++|=....|-..|.+-||+.|+.-.-
T Consensus 99 L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e 136 (617)
T PF15070_consen 99 LEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQE 136 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345555555555545555566666665554433
No 60
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=58.32 E-value=1.3e+02 Score=27.77 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=39.8
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHH
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAIL 312 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l 312 (358)
+++.+.++..++++.+..+...|+.....|.+.+..-+-|-+.-++||...
T Consensus 87 ~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ 137 (158)
T PF09486_consen 87 RVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAA 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888888877777777777766666543
No 61
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=57.90 E-value=36 Score=29.58 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=34.1
Q ss_pred HHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhH
Q 018324 267 SAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENE 306 (358)
Q Consensus 267 ~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~ 306 (358)
..+.++++.++..+...|......+++|-.++.+|-+|-.
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~ 45 (125)
T PF03245_consen 6 KRQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELA 45 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999987643
No 62
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=57.88 E-value=90 Score=24.46 Aligned_cols=100 Identities=23% Similarity=0.317 Sum_probs=55.3
Q ss_pred HHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhc------hhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHH
Q 018324 219 RENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAAR------DQELRTLSAEMNQLQSELRLARSFVAEREAEVL 292 (358)
Q Consensus 219 kdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r------~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~ 292 (358)
.+.......+|-.|+.....|...-.+...+|++..+...+ ++.+.....+++.++.++..+|..+-+...+..
T Consensus 11 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k 90 (123)
T PF02050_consen 11 QQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERK 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566778888888888855544433356555444433 234456666777777777777777766666666
Q ss_pred HHHhhhhh-----hhhHhHHHHHHHhhhhhh
Q 018324 293 RVRNTNNQ-----YVEENERLRAILGEWSTR 318 (358)
Q Consensus 293 ~~r~~n~q-----~~eEn~rlRa~l~Ews~r 318 (358)
-+..+..+ .-+++-+=...|||+..+
T Consensus 91 ~~e~L~e~~~~~~~~~~~r~Eq~~lDE~a~~ 121 (123)
T PF02050_consen 91 KLEKLKERRREEYQQEEERREQKELDEIASR 121 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 65555443 233344445566666543
No 63
>PRK10884 SH3 domain-containing protein; Provisional
Probab=57.51 E-value=1e+02 Score=29.26 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=20.6
Q ss_pred hhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhc
Q 018324 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240 (358)
Q Consensus 207 LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye 240 (358)
|..+|-.--.=+++-+..|.+++-.|+.++++-.
T Consensus 80 V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 80 IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444344455666777777777777776533
No 64
>KOG4324 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.98 E-value=57 Score=34.71 Aligned_cols=133 Identities=22% Similarity=0.231 Sum_probs=98.5
Q ss_pred chhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhH---HhhhhhchhHHhhhHHHHHhHHHHHHHHHh
Q 018324 206 RLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDL---AHLLAARDQELRTLSAEMNQLQSELRLARS 282 (358)
Q Consensus 206 ~LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl---~h~la~r~qelRa~~Ae~~q~~~el~~ar~ 282 (358)
.+.|-+.-|..-=+..+-.--++..+|.+++..-++..+..++|.|- -|+.--|+ .+-|-++.||+.++.
T Consensus 93 s~~dean~mva~aRke~~a~e~~~~ql~~ql~~~dt~~~s~~~ql~~Lkvmhsms~r~-------e~snrl~~eLsrt~t 165 (476)
T KOG4324|consen 93 SLFDEANNMVANARKETYASEKRVNQLKKQLVEADTLLSSAQLQLDSLKVMHSMSDRE-------EGSNRLKEELSRTQT 165 (476)
T ss_pred ccccccccccccccccchhhhhhhhhhhHHhhhhhcccchhhhhhhHHHHHhhcchhh-------hhhhhhhHHHHHHHH
Confidence 46677777777777777777789999999998888887766777654 34443333 456677888999999
Q ss_pred hhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhh--------hhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 283 FVAEREAEVLRVRNTNNQYVEENERLRAILGE--------WSTRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 283 li~er~~e~~~~r~~n~q~~eEn~rlRa~l~E--------ws~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
.++.+|.+..++-.+-.|-.-|-++|=+.|-| =-.|-++.|.-|+.-|.+-.-||-++..+..
T Consensus 166 ~la~kd~~~d~lS~i~~~~s~e~~Elt~sLf~Ea~KmV~aA~~r~~~~ek~l~Esr~~i~~lqaEv~alk~ 236 (476)
T KOG4324|consen 166 ELALKDEECDILSGIRAQLSQELEELTASLFEEAHKMVRAANPRQEFIEKQLTESRLKIDVLQAEVNALKT 236 (476)
T ss_pred HHhhhhhhhhhhhhhhcccchhHHHHHHHHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHHHHHhHH
Confidence 99999997776666666666677777766533 2345678899999999998889988776543
No 65
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=56.39 E-value=14 Score=32.12 Aligned_cols=43 Identities=47% Similarity=0.492 Sum_probs=22.0
Q ss_pred hHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 303 EENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 303 eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
||-++|-|.=.|-..|-|.||+.||.+..|.-||.|+-..||.
T Consensus 2 ee~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~ 44 (107)
T PF09304_consen 2 EEKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRN 44 (107)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Confidence 3444555555566667777777777777777777776666665
No 66
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=56.23 E-value=1.9e+02 Score=27.57 Aligned_cols=73 Identities=19% Similarity=0.310 Sum_probs=51.1
Q ss_pred HhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchh---HH--hhhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 018324 221 NLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQ---EL--RTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (358)
Q Consensus 221 HNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~q---el--Ra~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (358)
-...+...|-.+-+++..|.. .+..+|.-|+...|+-=+. |+ |.+......+..|++.|..|+.+=+...+..
T Consensus 95 ~i~~l~~~i~~l~~~~~~l~~-~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~ 172 (264)
T PF06008_consen 95 FIQNLQDNIQELIEQVESLNE-NGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKP 172 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-ccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344566677777788877777 4666888899888775554 44 3566666677788999988887766665433
No 67
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=56.18 E-value=2.4e+02 Score=31.93 Aligned_cols=87 Identities=25% Similarity=0.300 Sum_probs=65.7
Q ss_pred hhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHH-HHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHH
Q 018324 260 DQELRTLSAEMNQLQSELRLARSFVAEREAEVL-RVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQK 338 (358)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~-~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~ 338 (358)
.-||+-+-.|.|.+-+||++.=.+|..+=.++. +..+.-++|.+.+.-|+..|.+--.--+.++.-|++-|-+-.|-..
T Consensus 477 ~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~e 556 (739)
T PF07111_consen 477 SLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTE 556 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 568999999999999999999999966522221 4555556677777778877777777777888888888877777777
Q ss_pred HHHHhhhc
Q 018324 339 KISTRRNQ 346 (358)
Q Consensus 339 ~~~~~r~~ 346 (358)
+-..+|+.
T Consensus 557 ea~~lR~E 564 (739)
T PF07111_consen 557 EAAELRRE 564 (739)
T ss_pred HHHHHHHH
Confidence 76666653
No 68
>PRK04863 mukB cell division protein MukB; Provisional
Probab=56.07 E-value=1.3e+02 Score=36.41 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=24.1
Q ss_pred hhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhccc
Q 018324 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQS 242 (358)
Q Consensus 207 LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~ 242 (358)
+-+++..+.+. .+-...|.+++=.|+.+..+++.-
T Consensus 302 Le~tE~nL~rI-~diL~ELe~rL~kLEkQaEkA~ky 336 (1486)
T PRK04863 302 LAAEQYRLVEM-ARELAELNEAESDLEQDYQAASDH 336 (1486)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556555554 555578888888888888777665
No 69
>PRK14127 cell division protein GpsB; Provisional
Probab=55.51 E-value=22 Score=30.80 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=36.3
Q ss_pred HHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHH------HHhhhccHHHHHHHHHhhh
Q 018324 290 EVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERAL------EVERMSNIELQKKISTRRN 345 (358)
Q Consensus 290 e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~al------e~er~~~~~~~~~~~~~r~ 345 (358)
+...+-..|..--+||.+|++.|+||+.|.+..+..- ...=.+|.++-|.++.|=.
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk 99 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEK 99 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHH
Confidence 3444444455556778888888888888877654331 1223688888888887644
No 70
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=54.42 E-value=1.8e+02 Score=33.70 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=24.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 306 ERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 306 ~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
.-+...+..|..|..+++..++.-+-...++..++..++.
T Consensus 810 ~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~ 849 (1163)
T COG1196 810 DALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEE 849 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777776655555555555555444
No 71
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=54.38 E-value=2e+02 Score=27.46 Aligned_cols=65 Identities=26% Similarity=0.297 Sum_probs=45.7
Q ss_pred hHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhH----HHHHHHhhhhhhHHHHHHHHHHhh
Q 018324 266 LSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENE----RLRAILGEWSTRAAKLERALEVER 330 (358)
Q Consensus 266 ~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~----rlRa~l~Ews~raakle~ale~er 330 (358)
-+.+...++.|++..|.-|..-..++..++..|........ ++...++.|...-+.+|..|..=|
T Consensus 207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~ 275 (312)
T PF00038_consen 207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELR 275 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 45556777888888888888888888888888877655543 344455557777777776665543
No 72
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=54.21 E-value=1.8e+02 Score=29.14 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=29.4
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCC
Q 018324 213 ALLQYQRENLHFLSEEILRLQECLSKYEQSDDGST 247 (358)
Q Consensus 213 DLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t 247 (358)
..+.|+.+....+.+++-..+..+.+|++..+-..
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~ 205 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLSAYQQEKGIVS 205 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 34789999999999999999999999999854443
No 73
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=53.70 E-value=2e+02 Score=31.34 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=38.0
Q ss_pred HhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHh
Q 018324 263 LRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILG 313 (358)
Q Consensus 263 lRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~ 313 (358)
++-.-.-++++++|+..+.+.|.-=+.|..+|+..|.+--++-+|+|.-|+
T Consensus 143 ~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 143 LDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344445567778888888888888888888888877777777777776554
No 74
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=53.49 E-value=2.6e+02 Score=28.49 Aligned_cols=121 Identities=23% Similarity=0.287 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHh-hhHHHHHhHHHH-HHHHHhhhhHhHHHHHHHHhhhhhhh
Q 018324 225 LSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELR-TLSAEMNQLQSE-LRLARSFVAEREAEVLRVRNTNNQYV 302 (358)
Q Consensus 225 LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelR-a~~Ae~~q~~~e-l~~ar~li~er~~e~~~~r~~n~q~~ 302 (358)
|-|||-.|+... -+|++-+...+.-|. +|+.-++|++.| ..+...|-+|.+..+-+++.-=..-.
T Consensus 82 LlKkl~~l~keK-------------e~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le 148 (310)
T PF09755_consen 82 LLKKLQQLKKEK-------------ETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLE 148 (310)
T ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred hHhHHHHHHHhhhhhhHHHHHHHHHHh----------hhccHHHHHHHHHhhhcC-CCCCcccccCC
Q 018324 303 EENERLRAILGEWSTRAAKLERALEVE----------RMSNIELQKKISTRRNQH-GPAESNEHDTA 358 (358)
Q Consensus 303 eEn~rlRa~l~Ews~raakle~ale~e----------r~~~~~~~~~~~~~r~~~-~~~~~~~~~~~ 358 (358)
-|-..+...|+.-..=--.||.+||.| ||+.++-.|...+-+=.. ....++..|+.
T Consensus 149 ~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~ 215 (310)
T PF09755_consen 149 KEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTV 215 (310)
T ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHH
No 75
>PHA02562 46 endonuclease subunit; Provisional
Probab=53.47 E-value=2.7e+02 Score=28.67 Aligned_cols=105 Identities=14% Similarity=0.259 Sum_probs=50.9
Q ss_pred HHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh--hHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHH----
Q 018324 216 QYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV--DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREA---- 289 (358)
Q Consensus 216 rYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qv--dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~---- 289 (358)
.=+.+....+..++-.++.....|+. .+.=|.. ++... ++++=.+..+++.+++|++.....+++.+.
T Consensus 258 ~~l~~~~~~~~~~l~~~~~~~~~~~~--~~~Cp~C~~~~~~~----~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~ 331 (562)
T PHA02562 258 NKLNTAAAKIKSKIEQFQKVIKMYEK--GGVCPTCTQQISEG----PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE 331 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCCcCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777788888877753 2222211 22111 333334444444444544444444443333
Q ss_pred -------------HHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHH
Q 018324 290 -------------EVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERAL 326 (358)
Q Consensus 290 -------------e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~al 326 (358)
++...+..=...++++..|++.+++...+...+|-.|
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l 381 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEEL 381 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Confidence 3333333322344555556666666555555444433
No 76
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=53.27 E-value=1.9e+02 Score=31.96 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=43.5
Q ss_pred hHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHh---hhHHHHHhHHHHHHHHHhhh
Q 018324 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELR---TLSAEMNQLQSELRLARSFV 284 (358)
Q Consensus 208 lEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelR---a~~Ae~~q~~~el~~ar~li 284 (358)
+=..+++-.|+.+|++.-- -+=.....+-=|.-.+++..++ +++.+++ .+.+|+.+|++|++.-++-|
T Consensus 32 ~G~~~~IWkfli~~V~s~r-tV~~iRgNl~~~~~~~~~~~~~--------~~e~~~~~r~~L~~everLraei~~l~~~I 102 (632)
T PF14817_consen 32 RGNMAPIWKFLIQHVRSQR-TVRKIRGNLLWYGHQQSKERKK--------SRENEARRRRELEKEVERLRAEIQELDKEI 102 (632)
T ss_pred ccCChHHHHHHHHHcCcHh-HHHHHHcceeeccccccccchh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357888899999998642 2333333444455554444444 6666663 45555555555555555555
Q ss_pred hHhHHHHHH
Q 018324 285 AEREAEVLR 293 (358)
Q Consensus 285 ~er~~e~~~ 293 (358)
..++.|+..
T Consensus 103 ~~~e~e~~~ 111 (632)
T PF14817_consen 103 ESREREVSR 111 (632)
T ss_pred HHHHHHHHH
Confidence 555555543
No 77
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=53.18 E-value=74 Score=31.66 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHhHHhhHHHHHHHHHhhhhc
Q 018324 216 QYQRENLHFLSEEILRLQECLSKYE 240 (358)
Q Consensus 216 rYLkdHNa~LSkrIL~Lq~~l~kye 240 (358)
.-|+++.....++.=..+..+.+-+
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554443
No 78
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=52.97 E-value=1.3e+02 Score=27.24 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=39.1
Q ss_pred hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhh-hhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHh
Q 018324 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ-YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTR 343 (358)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q-~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~ 343 (358)
.+.++.++++.|+..-+.-+.+ ||..++....- .-.|-.|.|....+=..+-..++..++.| ++ .|+.+|...
T Consensus 77 ~lr~~~e~L~~eie~l~~~L~~---ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~e-i~--~lr~~iE~~ 150 (177)
T PF07798_consen 77 ELRSENEKLQREIEKLRQELRE---EINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTE-IA--NLRTEIESL 150 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHH
Confidence 4445555555555555544433 35555442221 22344566666666666666666666665 33 366666655
Q ss_pred hh
Q 018324 344 RN 345 (358)
Q Consensus 344 r~ 345 (358)
|.
T Consensus 151 K~ 152 (177)
T PF07798_consen 151 KW 152 (177)
T ss_pred HH
Confidence 54
No 79
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=52.62 E-value=1.5e+02 Score=26.01 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=6.1
Q ss_pred hHHhhhhhchhHH
Q 018324 251 DLAHLLAARDQEL 263 (358)
Q Consensus 251 dl~h~la~r~qel 263 (358)
++.+-|++=++++
T Consensus 13 el~n~La~Le~sl 25 (107)
T PF09304_consen 13 ELQNRLASLERSL 25 (107)
T ss_dssp -HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 80
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=52.46 E-value=2.6e+02 Score=31.96 Aligned_cols=130 Identities=26% Similarity=0.271 Sum_probs=70.3
Q ss_pred hhHh---hHHHHHHHHHH-------hHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhH-HhhhHHHHHhHHH
Q 018324 207 LSDE---QMALLQYQREN-------LHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQE-LRTLSAEMNQLQS 275 (358)
Q Consensus 207 LlEK---QADLIrYLkdH-------Na~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qe-lRa~~Ae~~q~~~ 275 (358)
|+-| |..+|+.|+-. ..++|+.|-.|+.+.++-++.-+|-+.-- . --+| +-.+.||+.-...
T Consensus 465 LSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~E---k----~~~E~I~k~~ae~~rq~~ 537 (961)
T KOG4673|consen 465 LSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETE---K----LLQETIEKHQAELTRQKD 537 (961)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHH---H----HHHHHHHHHHHHHHHHHH
Confidence 5544 45688888743 46788888888888888887755543100 0 0001 1133344444444
Q ss_pred HHHHHHhhhhHhHHHHHHHHhhhh----------------------hhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhcc
Q 018324 276 ELRLARSFVAEREAEVLRVRNTNN----------------------QYVEENERLRAILGEWSTRAAKLERALEVERMSN 333 (358)
Q Consensus 276 el~~ar~li~er~~e~~~~r~~n~----------------------q~~eEn~rlRa~l~Ews~raakle~ale~er~~~ 333 (358)
+...-|+++++.++....+..+|| -||---+-||-.|.--...||+=|--+-.| +
T Consensus 538 ~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~E---i 614 (961)
T KOG4673|consen 538 YYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGE---I 614 (961)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 444444444444443333333332 255555668888888888888777665444 4
Q ss_pred HHHHHHH--HHhhhc
Q 018324 334 IELQKKI--STRRNQ 346 (358)
Q Consensus 334 ~~~~~~~--~~~r~~ 346 (358)
-+||+.+ ++.|.+
T Consensus 615 ~~LqrRlqaaE~R~e 629 (961)
T KOG4673|consen 615 EDLQRRLQAAERRCE 629 (961)
T ss_pred HHHHHHHHHHHHHHH
Confidence 4555543 334443
No 81
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.91 E-value=2.9e+02 Score=32.50 Aligned_cols=67 Identities=13% Similarity=0.258 Sum_probs=33.3
Q ss_pred HhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 018324 224 FLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (358)
Q Consensus 224 ~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (358)
.+.+++-.++.++..-+....++++.. -++.=+.|+.++.++++.++.++.........+..+|.++
T Consensus 796 r~~~ei~~l~~qie~l~~~l~~~~~~~----s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 796 RFQMELKDVERKIAQQAAKLQGSDLDR----TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666655444333332211 2222234455555555555555555555555555555555
No 82
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=51.80 E-value=1e+02 Score=36.07 Aligned_cols=103 Identities=26% Similarity=0.332 Sum_probs=70.3
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCC----chh-------hHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhh
Q 018324 215 LQYQRENLHFLSEEILRLQECLSKYEQSDDGST----PQV-------DLAHLLAARDQELRTLSAEMNQLQSELRLARSF 283 (358)
Q Consensus 215 IrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t----~qv-------dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~l 283 (358)
|.-+++|+-..-...+.+--.=.+|..+.||.+ |.. -|+--||.-+.-+|.|-+||..--+-+..+|..
T Consensus 127 id~~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~e 206 (1195)
T KOG4643|consen 127 IDDLQEASEKIAEKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNE 206 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555443333333333357777776665 322 455557777778899999999999999999999
Q ss_pred hhHhHHHHHHHHhhhhh----------hhhHhHHHHHHHhhhhh
Q 018324 284 VAEREAEVLRVRNTNNQ----------YVEENERLRAILGEWST 317 (358)
Q Consensus 284 i~er~~e~~~~r~~n~q----------~~eEn~rlRa~l~Ews~ 317 (358)
|+--++|+..+|-.+.- |..|-+-||--.+-|+.
T Consensus 207 Lddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~ 250 (1195)
T KOG4643|consen 207 LDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDT 250 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCC
Confidence 99999999999988766 44555555554555553
No 83
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=51.64 E-value=1.1e+02 Score=34.11 Aligned_cols=81 Identities=21% Similarity=0.350 Sum_probs=52.3
Q ss_pred hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhh
Q 018324 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRR 344 (358)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r 344 (358)
.+..|..+|+.||+..-..+.+=++|++.+|..+.-=..|.|-|-..|.-=...++.||.-|-+|=.=.+||=.-+-.-|
T Consensus 549 ~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~ak 628 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAK 628 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555556665555431112367888888888888999999999999666677655444444
Q ss_pred h
Q 018324 345 N 345 (358)
Q Consensus 345 ~ 345 (358)
+
T Consensus 629 r 629 (697)
T PF09726_consen 629 R 629 (697)
T ss_pred H
Confidence 4
No 84
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.25 E-value=59 Score=26.85 Aligned_cols=50 Identities=30% Similarity=0.355 Sum_probs=28.1
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhh
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGE 314 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~E 314 (358)
|+-.|..+-|+++.|..-|+.-.+.=++|-.++... +--=.+|||+.||.
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e---~~~WQerlrsLLGk 75 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE---QNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 445566677777777766654443333333333222 22225899998874
No 85
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.69 E-value=48 Score=28.12 Aligned_cols=32 Identities=9% Similarity=0.010 Sum_probs=13.1
Q ss_pred hhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHH
Q 018324 264 RTLSAEMNQLQSELRLARSFVAEREAEVLRVR 295 (358)
Q Consensus 264 Ra~~Ae~~q~~~el~~ar~li~er~~e~~~~r 295 (358)
+.+.++..+++.|+......-++=..||.+++
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444443333333333444333
No 86
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=50.07 E-value=3e+02 Score=31.49 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHH----HHhHHHHHHHHHhhhhHh
Q 018324 212 MALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAE----MNQLQSELRLARSFVAER 287 (358)
Q Consensus 212 ADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae----~~q~~~el~~ar~li~er 287 (358)
-++|+-|+..--+|||++|.=+....|-. |.+.|--++-+. ...|++|...-.+.++.+
T Consensus 452 dE~I~~lm~EGEkLSK~ql~qs~iIkKLR-----------------Ak~ke~etl~~K~ge~i~~L~sE~~~lk~il~~K 514 (961)
T KOG4673|consen 452 DEIINQLMAEGEKLSKKQLAQSAIIKKLR-----------------AKIKEAETLEEKKGELITKLQSEENKLKSILRDK 514 (961)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----------------HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhH
Confidence 46788888888888998888777765543 333333333332 234666666666666555
Q ss_pred HHHHH-------HHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHh
Q 018324 288 EAEVL-------RVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVE 329 (358)
Q Consensus 288 ~~e~~-------~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~e 329 (358)
+.-=. +.-+.-...-++|.++|+-+++-..|++-+++++..-
T Consensus 515 ee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a 563 (961)
T KOG4673|consen 515 EETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEA 563 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 43222 2222222345667777777777777776666665443
No 87
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.70 E-value=2.2e+02 Score=26.91 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=31.0
Q ss_pred hhHHHHHhHHHHHHHHHh-----hhhHhHHHHHHHHhhhhhh-hhHhHHHHHHHhhhh
Q 018324 265 TLSAEMNQLQSELRLARS-----FVAEREAEVLRVRNTNNQY-VEENERLRAILGEWS 316 (358)
Q Consensus 265 a~~Ae~~q~~~el~~ar~-----li~er~~e~~~~r~~n~q~-~eEn~rlRa~l~Ews 316 (358)
.+..-|.+.-.+|..--. +.+||..-+..++.+.+.. +.-.|++|.+|+-+.
T Consensus 102 ~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~~ 159 (251)
T PF11932_consen 102 ELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDDADVSLAEKFRRVLEAYQ 159 (251)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Confidence 444444445555554333 4567777777777665443 777777777776554
No 88
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=49.21 E-value=1.2e+02 Score=28.99 Aligned_cols=78 Identities=15% Similarity=0.353 Sum_probs=60.5
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCC-chh--hHHhhhhhchhHHhh--------------hHHHHHhHHHHHHH
Q 018324 217 YQRENLHFLSEEILRLQECLSKYEQSDDGST-PQV--DLAHLLAARDQELRT--------------LSAEMNQLQSELRL 279 (358)
Q Consensus 217 YLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t-~qv--dl~h~la~r~qelRa--------------~~Ae~~q~~~el~~ 279 (358)
=|+...+.|-.+|...+....+.... +.+. ..| .+.-||.-.+++||. +...++-+.+++..
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~-~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~ 178 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSD-TDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDG 178 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC-CcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 48889999999999999998765222 2222 222 678899977777754 56788889999999
Q ss_pred HHhhhhHhHHHHHHHH
Q 018324 280 ARSFVAEREAEVLRVR 295 (358)
Q Consensus 280 ar~li~er~~e~~~~r 295 (358)
-.+-+..|..|++.++
T Consensus 179 Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 179 LESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999886
No 89
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=49.12 E-value=1.8e+02 Score=33.17 Aligned_cols=75 Identities=24% Similarity=0.240 Sum_probs=48.9
Q ss_pred hhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh------hHHhhhhhchh------HHhhhHHHHHhHH
Q 018324 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV------DLAHLLAARDQ------ELRTLSAEMNQLQ 274 (358)
Q Consensus 207 LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qv------dl~h~la~r~q------elRa~~Ae~~q~~ 274 (358)
=++.|-..++-+.+-|+.|.+++=.....+.---+ .++-|-| |++.+.++++. -+|.+-.+.+.+.
T Consensus 99 ~Lankda~lrq~eekn~slqerLelaE~~l~qs~r--ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~n 176 (916)
T KOG0249|consen 99 ELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR--AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELN 176 (916)
T ss_pred HHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh--hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 34445556677888899999988887777754444 5666666 56666666554 2345566666666
Q ss_pred HHHHHHHhh
Q 018324 275 SELRLARSF 283 (358)
Q Consensus 275 ~el~~ar~l 283 (358)
+||..||-.
T Consensus 177 aeL~rarqr 185 (916)
T KOG0249|consen 177 AELQRARQR 185 (916)
T ss_pred HHHHHHHHH
Confidence 667666654
No 90
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=48.65 E-value=47 Score=35.72 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=17.5
Q ss_pred CCCCccccCCCchhHhhHHHH---HHHHH
Q 018324 195 SLEGLRYHDGGRLSDEQMALL---QYQRE 220 (358)
Q Consensus 195 ~~~ElGfrd~g~LlEKQADLI---rYLkd 220 (358)
.-||.+|..-|.++=|.|++- .|.+|
T Consensus 239 pDGesR~Y~iG~lSIQrAAv~vLe~Yy~d 267 (505)
T PF06638_consen 239 PDGESRFYNIGQLSIQRAAVWVLEKYYKD 267 (505)
T ss_pred CCCceeeeecCchhHHHHHHHHHHHHhhc
Confidence 356778888887777777654 35555
No 91
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=48.01 E-value=14 Score=27.39 Aligned_cols=21 Identities=14% Similarity=0.479 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhhhhhccc
Q 018324 46 CFVLAGYAILAAGTTWIFHPI 66 (358)
Q Consensus 46 ~~~L~~yA~~~~~~pw~~~~~ 66 (358)
.|+|.||++++++..|++...
T Consensus 19 vIil~GF~~Va~~si~lLs~~ 39 (42)
T TIGR02808 19 FIILSGFVAVAVTSILLLNAF 39 (42)
T ss_pred hHHhhhhHHHHHHHHHHHHhh
Confidence 578999999999999987654
No 92
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=47.82 E-value=1.1e+02 Score=31.69 Aligned_cols=199 Identities=14% Similarity=0.121 Sum_probs=108.5
Q ss_pred cCcccCCcCcccchhhHHHHHHHHHHHHHHHhhhhhhccccccchh----------------HHHHHHHHHHHHHHHHHH
Q 018324 27 EAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPP----------------LLCSCGVILLALTGIFQQ 90 (358)
Q Consensus 27 e~p~~~~r~~~~~~g~~~y~~~L~~yA~~~~~~pw~~~~~~~~~~s----------------lL~y~~v~LWlLt~l~d~ 90 (358)
=.||-++.+. ++. +++=+++.+..=++.+..-|+|.-+.+-..| +.|..-+.-|-=.+.+.+
T Consensus 11 ~s~ldCs~~~-~~~-~~~t~~~ai~ii~~~f~r~~~l~~~~g~~lSf~WAEsn~fgF~~~~s~~c~~cl~~wT~~~fi~~ 88 (353)
T PF03268_consen 11 FSGLDCSAKA-KIR-GIFTRLIAIIIIALIFRRCWMLMQIEGKSLSFGWAESNMFGFMAMQSFVCAICLFGWTKNGFIPK 88 (353)
T ss_pred cCCcCcCccc-chH-hHHHHHHHHHHHHHHHHHHHHHHhcCCceeeeehhhcchhHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 3466665543 443 3444556666666667777877766655544 466777778999999999
Q ss_pred HHHH--HHhHHHhhhHHH--HHHHhhc---ccccchhhhhHHHHHHHHHHHH-hhcc-ccccHHHHHH-HHHHHHHHHHH
Q 018324 91 YFVY--QVQKIRLQGYYS--FSQKLKH---IVRLPFAITAYGTAAMLLVIVW-RPHI-SILSISTLLR-IIMLIEAICAA 160 (358)
Q Consensus 91 yvq~--qH~KlRl~GYl~--FYR~Tr~---lkRlPl~IvSlGNa~LLLI~~~-~~~~-~~Ls~~~lLr-iil~LEli~al 160 (358)
+.+. +.+++|...+.+ =|++.+. +-.+|-.++-.++++.+.+.-- ...- ..-++.+++- ++..+=-.++.
T Consensus 89 f~~~L~~lR~LRv~~n~~~D~Y~~lh~kafi~s~pw~v~~~s~aiy~~~~~ki~~~g~~~~~~~~~~~~~i~~l~~~is~ 168 (353)
T PF03268_consen 89 FEKKLARLRTLRVEPNQEIDDYRILHRKAFIFSIPWFVAFMSTAIYNAVHGKIIYGGAETSSWYYILDPFINFLCWYISF 168 (353)
T ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 9998 777888777654 2333332 2234555555555555555421 1000 1122222221 12222223345
Q ss_pred HHHHHHHH-------HHHHhcCCCCCCcccccccCCCCCCCCCCCccccCCC---chhHhhHHHHHHHHHHhHHhhH---
Q 018324 161 SFMSVYIG-------YVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGG---RLSDEQMALLQYQRENLHFLSE--- 227 (358)
Q Consensus 161 ~~li~YIv-------kVrrFNk~kp~PDVl~ee~s~~~ps~~~~ElGfrd~g---~LlEKQADLIrYLkdHNa~LSk--- 227 (358)
.|+.+|.- -+..||..=-. +.++. ...+.+ +....|.+|+++-+-=|..||.
T Consensus 169 i~L~~y~lv~~al~REi~yFN~ELe~--A~keK-------------~L~n~~vL~~F~~RQ~eL~~lv~~~ne~L~~f~~ 233 (353)
T PF03268_consen 169 ICLAIYFLVNSALNREIEYFNEELEK--ASKEK-------------KLKNPQVLEKFSHRQIELFELVNFANESLSSFMT 233 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhc-------------cccChHHHHHHhHHHHHHHHHHHHHHHhhhhhhh
Confidence 55555543 26778862110 11111 111222 4777899999999888888877
Q ss_pred --HHHHHHHHhh-hhccc
Q 018324 228 --EILRLQECLS-KYEQS 242 (358)
Q Consensus 228 --rIL~Lq~~l~-kye~~ 242 (358)
=+..+-..++ =|=.+
T Consensus 234 ~aPlf~f~a~iN~~Yi~s 251 (353)
T PF03268_consen 234 FAPLFCFYALINAVYIVS 251 (353)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 3344444443 24444
No 93
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=47.70 E-value=2.8e+02 Score=31.25 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=46.2
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHH
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKIS 341 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~ 341 (358)
..+..-.|.-+++.||+..++.+.+... +|-+|-+++++.+.+-..+-..+|......+=.-.+|++++.
T Consensus 360 Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~----------~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr 429 (717)
T PF09730_consen 360 KYKVAVSEVIQLKAELKALKSKYNELEE----------RYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELR 429 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3456666777777777777776665544 566666777777777777777777655444333345555555
Q ss_pred Hhhh
Q 018324 342 TRRN 345 (358)
Q Consensus 342 ~~r~ 345 (358)
.++.
T Consensus 430 ~l~~ 433 (717)
T PF09730_consen 430 ALSK 433 (717)
T ss_pred HHHH
Confidence 5544
No 94
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=47.69 E-value=34 Score=27.66 Aligned_cols=46 Identities=20% Similarity=0.390 Sum_probs=34.5
Q ss_pred HHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHH------HHHHHHHH
Q 018324 279 LARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAA------KLERALEV 328 (358)
Q Consensus 279 ~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raa------kle~ale~ 328 (358)
+|| .|+=.+.||.+++.-|+ .-.++-+++|..|..|.. +|..||..
T Consensus 24 Lar-~LGls~~dI~~i~~~~~---~~~eq~~~mL~~W~~r~g~~AT~~~L~~aL~~ 75 (86)
T cd08318 24 LAP-HLEMKDKEIRAIESDSE---DIKMQAKQLLVAWQDREGSQATPETLITALNA 75 (86)
T ss_pred HHH-HcCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 344 35567999999997543 347889999999999854 67777765
No 95
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=47.53 E-value=69 Score=30.49 Aligned_cols=15 Identities=47% Similarity=0.578 Sum_probs=10.4
Q ss_pred hhhhHhHHHHHHHhh
Q 018324 300 QYVEENERLRAILGE 314 (358)
Q Consensus 300 q~~eEn~rlRa~l~E 314 (358)
+..+||+|||+.|+-
T Consensus 97 ~l~~en~~L~~lL~~ 111 (276)
T PRK13922 97 QLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHhcC
Confidence 345688888887763
No 96
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.50 E-value=1.6e+02 Score=32.70 Aligned_cols=75 Identities=21% Similarity=0.287 Sum_probs=49.6
Q ss_pred HhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhh-----------------hhhhHHHHHHHHHHhhhcc
Q 018324 271 NQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGE-----------------WSTRAAKLERALEVERMSN 333 (358)
Q Consensus 271 ~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~E-----------------ws~raakle~ale~er~~~ 333 (358)
-+...+++..+.-+.+=+.|++.+...+.++-.|++.|++-|++ -..|.++||+.|+.+...-
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555554443 3456788999999999999
Q ss_pred HHHHHHHHHhhh
Q 018324 334 IELQKKISTRRN 345 (358)
Q Consensus 334 ~~~~~~~~~~r~ 345 (358)
-+|.+++..+|.
T Consensus 498 e~L~~~l~~l~k 509 (652)
T COG2433 498 EELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHH
Confidence 999999999984
No 97
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=47.01 E-value=1.4e+02 Score=32.24 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=43.5
Q ss_pred HHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHh----hhhhhhhH
Q 018324 229 ILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRN----TNNQYVEE 304 (358)
Q Consensus 229 IL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~----~n~q~~eE 304 (358)
+=+|...+..|.+....+...-++..-+..-+++++.+..+...+..++......+++-+.++..++. ..-...+|
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~ 263 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEE 263 (650)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 33455555555443222222223333344444455555555555555555555554444444443332 22234444
Q ss_pred hHHHHHHHhhhhhhHHHHHHHH
Q 018324 305 NERLRAILGEWSTRAAKLERAL 326 (358)
Q Consensus 305 n~rlRa~l~Ews~raakle~al 326 (358)
-+.|.+-+.++..+....+..+
T Consensus 264 r~~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 264 REQLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555544444444443
No 98
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=46.38 E-value=3.7e+02 Score=32.03 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=59.4
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhh------hhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHH
Q 018324 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHL------LAARDQELRTLSAEMNQLQSELRLARSFVAEREAE 290 (358)
Q Consensus 217 YLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~------la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e 290 (358)
=++++...|.+++=.|..-+..|.+-..... ....... +.....+++.+.+++.+.+.++..+...+.+-+.+
T Consensus 234 ~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 312 (1353)
T TIGR02680 234 EYRDELERLEALERALRNFLQRYRRYARTML-RRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALERE 312 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777777766532110 0011111 11222244455555555555555554444444444
Q ss_pred HHHHHhh------hhhh--hhHhHHHHHHHhhhhhhHHHHHHHHHHh
Q 018324 291 VLRVRNT------NNQY--VEENERLRAILGEWSTRAAKLERALEVE 329 (358)
Q Consensus 291 ~~~~r~~------n~q~--~eEn~rlRa~l~Ews~raakle~ale~e 329 (358)
++.++.. ++.| .+|-++++..+.++...+++-+..++.-
T Consensus 313 ~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a 359 (1353)
T TIGR02680 313 ADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREA 359 (1353)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 2223 4666688888888888887777666543
No 99
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=46.29 E-value=1.8e+02 Score=28.92 Aligned_cols=74 Identities=30% Similarity=0.385 Sum_probs=60.4
Q ss_pred hhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhh-----hhhhHhHHHHHHHhhhhhhHHHHHHHHHH
Q 018324 255 LLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNN-----QYVEENERLRAILGEWSTRAAKLERALEV 328 (358)
Q Consensus 255 ~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~-----q~~eEn~rlRa~l~Ews~raakle~ale~ 328 (358)
|..+=.+.|..+..|.+.++.|.+.-.++=++=++-++++=.-|. -||.+.++.=--|=-+|+|-|+.|.+|..
T Consensus 94 Li~~l~~kl~~L~~eqe~l~ee~~~n~~lG~~ve~~v~~~c~p~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~ 172 (264)
T PF08687_consen 94 LIESLSKKLEVLQEEQEALQEEIQANEALGAEVEALVQEVCKPNEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSS 172 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444566799999999999999988888888887777755553 39999999999999999999999999964
No 100
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=46.22 E-value=4.9e+02 Score=30.90 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=59.8
Q ss_pred hhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHh
Q 018324 264 RTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTR 343 (358)
Q Consensus 264 Ra~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~ 343 (358)
+.+.++.+.++...+-.-..|.+|+-|+.++.+..+.--|--.-.--.+.+-+.++..||+.+--.---|-.|.|+|.+|
T Consensus 477 ~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 477 DQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45677777778888888899999999999988765432222223334566777788888887766666688899999988
Q ss_pred hh
Q 018324 344 RN 345 (358)
Q Consensus 344 r~ 345 (358)
-.
T Consensus 557 k~ 558 (1195)
T KOG4643|consen 557 KT 558 (1195)
T ss_pred HH
Confidence 76
No 101
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=46.13 E-value=1e+02 Score=29.54 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=27.5
Q ss_pred HHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhh
Q 018324 267 SAEMNQLQSELRLARSFVAEREAEVLRVRNTNN 299 (358)
Q Consensus 267 ~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~ 299 (358)
+.|+..|.+.|+-+.+.+.-|++||..+|+-.+
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~ 41 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLR 41 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 568888899999999999999999988887544
No 102
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.88 E-value=1.1e+02 Score=32.00 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=43.1
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhh---hh--------HhHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQY---VE--------ENERLRAILGEWSTRAAKLERALEVER 330 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~---~e--------En~rlRa~l~Ews~raakle~ale~er 330 (358)
+++++.+++.+++.|++.+++-++--++.+.-+.....+- .. .-+.+.+.++-...+.+++-.++..=.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAE 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665555555554443333221 11 124456655555555544433332222
Q ss_pred hccHHHHHHHHHhhhcC
Q 018324 331 MSNIELQKKISTRRNQH 347 (358)
Q Consensus 331 ~~~~~~~~~~~~~r~~~ 347 (358)
-.--++++++.+++.+.
T Consensus 152 ~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 152 RRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 22245666666665543
No 103
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=45.51 E-value=3e+02 Score=26.76 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=26.1
Q ss_pred chhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhh
Q 018324 206 RLSDEQMALLQYQRENLHFLSEEILRLQECLSKY 239 (358)
Q Consensus 206 ~LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~ky 239 (358)
.....|..+--|..+.|.++|==+|=|.-++.++
T Consensus 83 ~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~ 116 (216)
T KOG1962|consen 83 PLARTHLLEALFRAQRNLYISGFVLFLSLVIRRL 116 (216)
T ss_pred hHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Confidence 4677788888899999999998777777776443
No 104
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=45.21 E-value=3.5e+02 Score=30.76 Aligned_cols=57 Identities=28% Similarity=0.349 Sum_probs=41.4
Q ss_pred hhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHH
Q 018324 256 LAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAIL 312 (358)
Q Consensus 256 la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l 312 (358)
++....++..+-+|.+-++.|+...|.-+.+=+..|..++.+.+.--+|-++|...|
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML 165 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777777777777777777777777777777777777777777777666
No 105
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.08 E-value=26 Score=35.43 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=29.8
Q ss_pred hhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHH
Q 018324 257 AARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLR 293 (358)
Q Consensus 257 a~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~ 293 (358)
.+-.+|+..-.+|+-.-|.||++=-.+||+|+.++|+
T Consensus 56 ~~~a~~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 56 STQAKDLAKKQAELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 3445566667777777888899989999999999998
No 106
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=44.75 E-value=19 Score=26.73 Aligned_cols=22 Identities=23% Similarity=0.622 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhhhhccc
Q 018324 45 YCFVLAGYAILAAGTTWIFHPI 66 (358)
Q Consensus 45 y~~~L~~yA~~~~~~pw~~~~~ 66 (358)
=.|+|.||+++++++.|++...
T Consensus 18 PvI~L~GF~~Vav~~~~lL~~~ 39 (42)
T PF09574_consen 18 PVIILSGFAAVAVASIWLLSLT 39 (42)
T ss_pred hHHHHhhHHHHHHHHHHHHHhh
Confidence 3578999999999999987653
No 107
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=44.67 E-value=2.6e+02 Score=27.88 Aligned_cols=8 Identities=13% Similarity=0.364 Sum_probs=3.2
Q ss_pred HHHHHhhh
Q 018324 338 KKISTRRN 345 (358)
Q Consensus 338 ~~~~~~r~ 345 (358)
.++.++|.
T Consensus 127 ~~L~~L~k 134 (314)
T PF04111_consen 127 NQLDRLRK 134 (314)
T ss_dssp HHHHCHHT
T ss_pred HHHHHHHh
Confidence 34444443
No 108
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.74 E-value=2e+02 Score=32.11 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=49.9
Q ss_pred hhhHHHHHhHHHH----HHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHH
Q 018324 264 RTLSAEMNQLQSE----LRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKK 339 (358)
Q Consensus 264 Ra~~Ae~~q~~~e----l~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~ 339 (358)
+.+....+.++.| ..+||..|.+|-.-++.. -+|+.+|-+.++...+.=+.+|.+|..++|.-+=.--.|.|+
T Consensus 539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~---~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R 615 (717)
T PF10168_consen 539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQ---KEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKR 615 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555544 457888888775554443 347777777787777777788877776666544444455555
Q ss_pred HHHhhhc
Q 018324 340 ISTRRNQ 346 (358)
Q Consensus 340 ~~~~r~~ 346 (358)
+.++.+.
T Consensus 616 ~~~vl~~ 622 (717)
T PF10168_consen 616 VDRVLQL 622 (717)
T ss_pred HHHHHHH
Confidence 5555543
No 109
>PHA02562 46 endonuclease subunit; Provisional
Probab=43.48 E-value=3.2e+02 Score=28.16 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhcc
Q 018324 213 ALLQYQRENLHFLSEEILRLQECLSKYEQ 241 (358)
Q Consensus 213 DLIrYLkdHNa~LSkrIL~Lq~~l~kye~ 241 (358)
+.+..+.+....|..++=.+.+.+.+++.
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~ 327 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDELEE 327 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544443
No 110
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=43.40 E-value=1e+02 Score=28.58 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHh---------hhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q 018324 46 CFVLAGYAILAAG---------TTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYF 92 (358)
Q Consensus 46 ~~~L~~yA~~~~~---------~pw~~~~~~~~~~slL~y~~v~LWlLt~l~d~yv 92 (358)
+.||+|||+++.+ .|..+...++..-.++..+|..-.++..++=.++
T Consensus 27 saLlaGFamvamvE~q~~~~~~~~~~LL~~f~~~TallV~v~l~almisT~iL~~I 82 (175)
T PF07856_consen 27 SALLAGFAMVAMVEFQFPEDTTYPPPLLIAFAVVTALLVAVHLFALMISTCILPSI 82 (175)
T ss_pred HHHHHhhheeeEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5678999988765 1222222333333444455544444444444444
No 111
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=42.85 E-value=1.9e+02 Score=26.15 Aligned_cols=69 Identities=13% Similarity=0.322 Sum_probs=53.0
Q ss_pred hhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHH
Q 018324 256 LAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEV 328 (358)
Q Consensus 256 la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~ 328 (358)
.+....++-..-++.+.+.+|+.-..+-|.+|+..|..++.. ...|+-|.+.+.+|..-+++-+...++
T Consensus 8 m~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~----~~d~eeLk~~i~~lq~~~~~~~~~~e~ 76 (155)
T PF06810_consen 8 MAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKS----AKDNEELKKQIEELQAKNKTAKEEYEA 76 (155)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455565566777888889999999999999999999984 456888999999999888844444443
No 112
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=42.00 E-value=1.5e+02 Score=26.82 Aligned_cols=64 Identities=11% Similarity=0.160 Sum_probs=40.6
Q ss_pred hhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHH
Q 018324 264 RTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALE 327 (358)
Q Consensus 264 Ra~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale 327 (358)
|++=..++.++.++..|-.-++.+.++..++...+....+--+.+...+.+|..|..+++..+|
T Consensus 124 k~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~ 187 (236)
T PF09325_consen 124 KEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFE 187 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555666666666666666666666666554455555667777788887777776554
No 113
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=41.28 E-value=5.5e+02 Score=28.69 Aligned_cols=121 Identities=23% Similarity=0.331 Sum_probs=68.6
Q ss_pred hhHhhHHHHHHH---HHHhHHhhHHHHHHHHH-------h----hhhcccCCCCCchhhH-HhhhhhchhHHhhhHHHHH
Q 018324 207 LSDEQMALLQYQ---RENLHFLSEEILRLQEC-------L----SKYEQSDDGSTPQVDL-AHLLAARDQELRTLSAEMN 271 (358)
Q Consensus 207 LlEKQADLIrYL---kdHNa~LSkrIL~Lq~~-------l----~kye~~~~g~t~qvdl-~h~la~r~qelRa~~Ae~~ 271 (358)
.-|+|++|+.=. ++.|..+-++|..||.. + ++|+....+-..+|.+ -.=|+.-.+-++.+..|..
T Consensus 180 ~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e 259 (629)
T KOG0963|consen 180 WAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVE 259 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777776543 44455555677766443 2 2333333333455544 2223333445567777777
Q ss_pred hHHHHHHHHHh---------------hhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018324 272 QLQSELRLARS---------------FVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVER 330 (358)
Q Consensus 272 q~~~el~~ar~---------------li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er 330 (358)
++..++..+-+ .+.-+|++|+++ ++-+-....-++-.++.|-..-..||+-|++-+
T Consensus 260 ~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L---~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~ 330 (629)
T KOG0963|consen 260 QLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQL---SNDIERLEASLVEEREKHKAQISALEKELKAKI 330 (629)
T ss_pred HHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655543 344456666554 222333333445566889999999999988754
No 114
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.08 E-value=2e+02 Score=25.56 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHhHHhh
Q 018324 210 EQMALLQYQRENLHFLS 226 (358)
Q Consensus 210 KQADLIrYLkdHNa~LS 226 (358)
-...+++||++.|+-.|
T Consensus 2 Ae~~Il~y~~~qNRPys 18 (169)
T PF07106_consen 2 AEDAILEYMKEQNRPYS 18 (169)
T ss_pred hHHHHHHHHHHcCCCCc
Confidence 35667889998887655
No 115
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=40.97 E-value=1.1e+02 Score=27.92 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=32.2
Q ss_pred hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHH
Q 018324 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKIST 342 (358)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~ 342 (358)
.++..+..+..++..-+..+.+++..|..++..+.+.-++...|...|.|+..-...|=-.+.+=.+.+--+.+++.+
T Consensus 92 el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~ 169 (194)
T PF08614_consen 92 ELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRK 169 (194)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666666666666666666666666666666666665555544444444433334444333
No 116
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.27 E-value=1.6e+02 Score=27.51 Aligned_cols=112 Identities=23% Similarity=0.229 Sum_probs=64.8
Q ss_pred HHHHHHhhhhcccCCCCCchh---hHHhhhhhchhHH--hhhHHHHHhHHHHHHHHHhhhhHhHH------------HHH
Q 018324 230 LRLQECLSKYEQSDDGSTPQV---DLAHLLAARDQEL--RTLSAEMNQLQSELRLARSFVAEREA------------EVL 292 (358)
Q Consensus 230 L~Lq~~l~kye~~~~g~t~qv---dl~h~la~r~qel--Ra~~Ae~~q~~~el~~ar~li~er~~------------e~~ 292 (358)
+-|.+-+=+|=| +|+|-.- .++.-|.....-- |==|-=..|-++++.+|..-=.++.+ =+|
T Consensus 13 lLLAEtVLrhIR--eG~TQL~AFeEvg~~L~RTsAACGFRWNs~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq 90 (161)
T TIGR02894 13 LLLAETVLRHIR--EGSTQLSAFEEVGRALNRTAAACGFRWNAYVRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQ 90 (161)
T ss_pred HHHHHHHHHHHh--cchHHHHHHHHHHHHHcccHHHhcchHHHHHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHH
Confidence 344455545544 4666433 4455555544421 21122234555666666544444442 234
Q ss_pred HHHhhhhhh---hhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHh
Q 018324 293 RVRNTNNQY---VEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTR 343 (358)
Q Consensus 293 ~~r~~n~q~---~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~ 343 (358)
.+...+.+. ..||++|+.-+.+|..+...||.-++.-.-....++..|.++
T Consensus 91 ~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 91 NLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444443 469999999999999999999988776555555556666554
No 117
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=40.12 E-value=1.2e+02 Score=25.97 Aligned_cols=52 Identities=25% Similarity=0.272 Sum_probs=31.4
Q ss_pred hHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhh
Q 018324 266 LSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWST 317 (358)
Q Consensus 266 ~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~ 317 (358)
+-..++++.+.+..-=..|++=...+..+=..|..-.-||+.||..|++-..
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555555555555555555556666666677777777777777766443
No 118
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=39.76 E-value=1.9e+02 Score=26.95 Aligned_cols=90 Identities=24% Similarity=0.321 Sum_probs=56.2
Q ss_pred HHHHHhhhhcccCCCCCchhhHHhhhhhchhHHh-hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHH
Q 018324 231 RLQECLSKYEQSDDGSTPQVDLAHLLAARDQELR-TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLR 309 (358)
Q Consensus 231 ~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelR-a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlR 309 (358)
+|...-.+-..+-.|.. .+-++.+++-| ..| -+..+..+..+++..++.-++.+..+|.-.+. +-.|++
T Consensus 51 ~l~~~~arid~m~tG~~-~f~id~~la~~--ryr~vl~~~~~~aE~~~aaa~~al~~~~~~laa~~r-------~iaRn~ 120 (158)
T TIGR02559 51 RLHRHAARIDDLATGTA-SFTIDAYLQCR--AYRDVLEAHLGAAEQAEAAARAALQALAAALAAKKR-------EIARLD 120 (158)
T ss_pred HHHHHHHHHHHHhcCCC-cccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 33333333445544433 34455555544 233 34445556667777777777777777776653 456788
Q ss_pred HHHhhhhhhHHHHHHHHHHhh
Q 018324 310 AILGEWSTRAAKLERALEVER 330 (358)
Q Consensus 310 a~l~Ews~raakle~ale~er 330 (358)
+.++--+.|++.|-++.|+++
T Consensus 121 a~id~c~eR~~~l~ra~ea~~ 141 (158)
T TIGR02559 121 AQIDVCRERAERLRRAGEAAR 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888765
No 119
>KOG3814 consensus Signaling protein van gogh/strabismus [Signal transduction mechanisms]
Probab=39.75 E-value=45 Score=35.35 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=14.1
Q ss_pred HHHHHhhhhhhccccccchhH
Q 018324 53 AILAAGTTWIFHPIHYLIPPL 73 (358)
Q Consensus 53 A~~~~~~pw~~~~~~~~~~sl 73 (358)
+++.|.+|-+|...|+.-|++
T Consensus 121 ~~~sf~sp~am~~lP~~~P~~ 141 (531)
T KOG3814|consen 121 GLLSFLSPPAMCLLPIIAPRF 141 (531)
T ss_pred HHHHHhchhHHHhccccccch
Confidence 455677777777777666653
No 120
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=39.69 E-value=3.9e+02 Score=26.48 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=17.2
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhh
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNT 297 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~ 297 (358)
||.++.+|+..+..++..-|..+++...+.+++...
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~ 245 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEK 245 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555444444444444444444433
No 121
>PF00669 Flagellin_N: Bacterial flagellin N-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1IO1_A 1UCU_A 3A5X_A 3V47_C 2D4X_A 3PWX_B 3K8V_A 2ZBI_B 3K8W_A.
Probab=39.67 E-value=2.3e+02 Score=23.76 Aligned_cols=79 Identities=23% Similarity=0.268 Sum_probs=52.1
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchh--HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHH
Q 018324 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQ--ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVR 295 (358)
Q Consensus 218 LkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~q--elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r 295 (358)
++.+...+..++-.++.+++-.++...+++..++....+.-+.+ .+.....-.+...+-|..+-.-+.+=..-++++|
T Consensus 10 ~~~~l~~~~~~l~~~~~qlsTG~k~~~~sd~p~~~~~~~~l~~~~~~~~~~~~n~~~~~~~l~~~~~al~~i~~~l~~~~ 89 (139)
T PF00669_consen 10 ALNNLNKLQSNLNKLQEQLSTGKKINSPSDDPAAASRALSLRSQISRLEQYQRNIDDAKSRLSTAETALSSISDILQRAR 89 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS--TTTCGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778889999999999999998888888888777665554 3334444455555566666665555555555554
Q ss_pred h
Q 018324 296 N 296 (358)
Q Consensus 296 ~ 296 (358)
.
T Consensus 90 ~ 90 (139)
T PF00669_consen 90 E 90 (139)
T ss_dssp H
T ss_pred H
Confidence 3
No 122
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=39.50 E-value=2.9e+02 Score=27.38 Aligned_cols=53 Identities=25% Similarity=0.248 Sum_probs=23.5
Q ss_pred HHHHHHHhhhhHhHHHHH-------HHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHH
Q 018324 275 SELRLARSFVAEREAEVL-------RVRNTNNQYVEENERLRAILGEWSTRAAKLERALE 327 (358)
Q Consensus 275 ~el~~ar~li~er~~e~~-------~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale 327 (358)
.||..+|..|.+-+.+|. +++..-.+--++-+-+.+...+.-..-+.+|+-+|
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444 44433333334444444444444444444454444
No 123
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.33 E-value=4.9e+02 Score=28.42 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHhhhccHHHHHHHHHhhhc
Q 018324 316 STRAAKLERALEVERMSNIELQKKISTRRNQ 346 (358)
Q Consensus 316 s~raakle~ale~er~~~~~~~~~~~~~r~~ 346 (358)
..+-..|+|..+.-|-.=..+.+++.+.+-+
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444556666665554444455555555443
No 124
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=39.21 E-value=3.8e+02 Score=27.43 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=17.5
Q ss_pred HhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhh
Q 018324 312 LGEWSTRAAKLERALEVERMSNIELQKKISTRR 344 (358)
Q Consensus 312 l~Ews~raakle~ale~er~~~~~~~~~~~~~r 344 (358)
+......-..|+|..+..+=-=..+.+++.+.+
T Consensus 350 ~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 350 IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666665544444555554444
No 125
>PRK11637 AmiB activator; Provisional
Probab=39.03 E-value=4.4e+02 Score=26.88 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=16.6
Q ss_pred hhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHH
Q 018324 256 LAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLR 293 (358)
Q Consensus 256 la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~ 293 (358)
++.-++++..+.+++++++.++...+..++.|-....+
T Consensus 98 i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 98 LNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444433
No 126
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.84 E-value=3.3e+02 Score=25.36 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=28.4
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHh
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILG 313 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~ 313 (358)
..+.+..|..+.+..+..-+..|++...+|...|..-+.--++++..|..|.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555555555555555555555555
No 127
>PF15456 Uds1: Up-regulated During Septation
Probab=38.82 E-value=2.7e+02 Score=24.48 Aligned_cols=66 Identities=24% Similarity=0.162 Sum_probs=46.3
Q ss_pred hHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHh-------------hhhhhhhHhHHHHHHHhhhhhhHHHHHHHHH
Q 018324 261 QELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRN-------------TNNQYVEENERLRAILGEWSTRAAKLERALE 327 (358)
Q Consensus 261 qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~-------------~n~q~~eEn~rlRa~l~Ews~raakle~ale 327 (358)
+|++.|+.-++.++.-+. .+..-||+...-.+. ...+-.||-.-.-+-.+||..--.++|+++-
T Consensus 29 kEl~~L~~R~~~lr~kl~---le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~ 105 (124)
T PF15456_consen 29 KELRSLDSRLEYLRRKLA---LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENRLA 105 (124)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 355555555555554443 566677876665554 4667788888899999999999999998875
Q ss_pred Hh
Q 018324 328 VE 329 (358)
Q Consensus 328 ~e 329 (358)
.=
T Consensus 106 ~~ 107 (124)
T PF15456_consen 106 EV 107 (124)
T ss_pred HH
Confidence 43
No 128
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.52 E-value=7.3e+02 Score=29.34 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=42.9
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhH
Q 018324 214 LLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAE 286 (358)
Q Consensus 214 LIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~e 286 (358)
.|..+..-...|.++|=.|...+..|.. +. .-.++..-+.+-+.+++++.++.+.++.+.......|.+
T Consensus 793 ~i~r~~~ei~~l~~qie~l~~~l~~~~~--~~--s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~ 861 (1311)
T TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQGSDL--DR--TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQH 861 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc--cC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555567788888999999888876554 22 445566667777777777755544444444444443333
No 129
>PF08618 Opi1: Transcription factor Opi1; InterPro: IPR013927 Opi1 is a leucine zipper containing yeast transcription factor that negatively regulates phospholipid biosynthesis []. It represses the expression of several UAS(INO) cis acting element containing genes and its activity is mediated by phosphorylations catalysed by protein kinase A, protein kinase C and casein kinase II [].
Probab=38.49 E-value=70 Score=33.72 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=27.4
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhccc
Q 018324 213 ALLQYQRENLHFLSEEILRLQECLSKYEQS 242 (358)
Q Consensus 213 DLIrYLkdHNa~LSkrIL~Lq~~l~kye~~ 242 (358)
=.|++||--|.+|+.+|..||..|.+|++.
T Consensus 235 yCL~~Lr~AN~~i~~~i~~Lq~~l~e~e~~ 264 (427)
T PF08618_consen 235 YCLHWLRLANAHIDSKINFLQDVLEEYERD 264 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367899999999999999999999999954
No 130
>PF07099 DUF1361: Protein of unknown function (DUF1361); InterPro: IPR009793 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.
Probab=38.45 E-value=69 Score=29.07 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC--CCccc
Q 018324 152 MLIEAICAASFMSVYIGYVHQYNSLNS--QPDVM 183 (358)
Q Consensus 152 l~LEli~al~~li~YIvkVrrFNk~kp--~PDVl 183 (358)
..+=.++.+++.++|++|.-|+|+=+- +|+..
T Consensus 108 ~~~~~~~~Lss~GIYlGRflR~NSWDi~~~P~~l 141 (168)
T PF07099_consen 108 LFIILISFLSSFGIYLGRFLRLNSWDILTNPQSL 141 (168)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHhCCHHHH
Confidence 334456677889999999999999654 45443
No 131
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=38.17 E-value=2.2e+02 Score=33.08 Aligned_cols=70 Identities=29% Similarity=0.386 Sum_probs=48.2
Q ss_pred hhchhHHhhhHHHHHhHHHHHH----HHHhhhh-------HhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHH
Q 018324 257 AARDQELRTLSAEMNQLQSELR----LARSFVA-------EREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERA 325 (358)
Q Consensus 257 a~r~qelRa~~Ae~~q~~~el~----~ar~li~-------er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~a 325 (358)
+.||.-.+-+..|..|+..++. .||.-|. +=+-+.++.+-.+++-.+|+++||..+..--.----+|.+
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka 408 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKA 408 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666555443 5555554 4455667777788889999999999998776655667777
Q ss_pred H
Q 018324 326 L 326 (358)
Q Consensus 326 l 326 (358)
.
T Consensus 409 ~ 409 (980)
T KOG0980|consen 409 Q 409 (980)
T ss_pred H
Confidence 6
No 132
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=38.07 E-value=4.4e+02 Score=27.84 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=45.8
Q ss_pred hHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHH
Q 018324 261 QELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAK 321 (358)
Q Consensus 261 qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raak 321 (358)
-|+-.+..|.+.++.|+...+.-|.....|++.... +...|++.+|.-+.+|+-...-
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~---~~~~~~~~~~~~~~~~~~~~~~ 331 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEA---QLEGEQESFREQPQELSQQLEP 331 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHH
Confidence 567778888899999999888888888888876654 7778888888888888765543
No 133
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=37.76 E-value=2.2e+02 Score=31.38 Aligned_cols=76 Identities=18% Similarity=0.329 Sum_probs=55.1
Q ss_pred HhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhh
Q 018324 221 NLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300 (358)
Q Consensus 221 HNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q 300 (358)
.|..|-+.+-.||...-+-. -.-.+|...|.+-.+=.|.+.+.+++++.++..-+-=++.++.|++.+...++|
T Consensus 161 QN~eLK~QL~Elq~~Fv~lt------ne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq 234 (617)
T PF15070_consen 161 QNRELKEQLAELQDAFVKLT------NENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQ 234 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHH------HhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44555555555555331111 123466667777666668999999999999999999999999999999999887
Q ss_pred hh
Q 018324 301 YV 302 (358)
Q Consensus 301 ~~ 302 (358)
|.
T Consensus 235 ~~ 236 (617)
T PF15070_consen 235 YL 236 (617)
T ss_pred HH
Confidence 54
No 134
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=37.54 E-value=5e+02 Score=32.70 Aligned_cols=130 Identities=23% Similarity=0.330 Sum_probs=73.6
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCC--------------chh-hHHhhhhhchhHHh-hhHHHHHhHHHHHH
Q 018324 215 LQYQRENLHFLSEEILRLQECLSKYEQSDDGST--------------PQV-DLAHLLAARDQELR-TLSAEMNQLQSELR 278 (358)
Q Consensus 215 IrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t--------------~qv-dl~h~la~r~qelR-a~~Ae~~q~~~el~ 278 (358)
|.-+.+++.+|+++=-.|++.+......-.+-- .++ |+.-.|. +++..| .+--...-+.+|++
T Consensus 973 ~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le-~e~~~r~e~Ek~~rkle~el~ 1051 (1930)
T KOG0161|consen 973 INSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLE-REKRIRMELEKAKRKLEGELK 1051 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 334888888888876666666655443321111 111 2222222 222222 12222224445554
Q ss_pred HHHhhhh--------------HhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhh
Q 018324 279 LARSFVA--------------EREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRR 344 (358)
Q Consensus 279 ~ar~li~--------------er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r 344 (358)
.++.-++ .++.|++++-+-++.--.+-.-+-..+.|=+.|-+.|+--||.||-+..++.|+.+.+.
T Consensus 1052 ~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~ 1131 (1930)
T KOG0161|consen 1052 DLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLS 1131 (1930)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 34445555444444444444555666788899999999999999999988888887776
Q ss_pred h
Q 018324 345 N 345 (358)
Q Consensus 345 ~ 345 (358)
.
T Consensus 1132 ~ 1132 (1930)
T KOG0161|consen 1132 E 1132 (1930)
T ss_pred H
Confidence 5
No 135
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=37.00 E-value=57 Score=32.03 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=15.0
Q ss_pred hhhhhhhHhHHHHHHHhhh
Q 018324 297 TNNQYVEENERLRAILGEW 315 (358)
Q Consensus 297 ~n~q~~eEn~rlRa~l~Ew 315 (358)
...++.+||+|||..|+.-
T Consensus 91 ~~~~l~~EN~~Lr~lL~~~ 109 (284)
T COG1792 91 EVESLEEENKRLKELLDFK 109 (284)
T ss_pred HHHHHHHHHHHHHHHhCCc
Confidence 3457889999999998753
No 136
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.91 E-value=7.4e+02 Score=28.91 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=59.9
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHH-hhhhh----chhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHH
Q 018324 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLA-HLLAA----RDQELRTLSAEMNQLQSELRLARSFVAEREAEV 291 (358)
Q Consensus 217 YLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~-h~la~----r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~ 291 (358)
|+-=|-.+|.+++-.+-+.+-.-+...++-|--+-=. .-++. =..+.|.+-.+..++++-...-..+.+|=++++
T Consensus 615 ~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~v 694 (970)
T KOG0946|consen 615 ALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEV 694 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677766666555533333344433222110 01111 122446777777777777777777888888888
Q ss_pred HHHHhhhhhhhhHhHHHHHHHh
Q 018324 292 LRVRNTNNQYVEENERLRAILG 313 (358)
Q Consensus 292 ~~~r~~n~q~~eEn~rlRa~l~ 313 (358)
+..-..-.|.-++++-|+.-||
T Consensus 695 q~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 695 QDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888888888888887
No 137
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=36.73 E-value=6.9e+02 Score=28.50 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=40.5
Q ss_pred hhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 018324 300 QYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQH 347 (358)
Q Consensus 300 q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~~~ 347 (358)
.+.||.+.++.-+.+|......|+.-|..-=++-.+++-..+++.++.
T Consensus 462 e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~ 509 (775)
T PF10174_consen 462 ERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQ 509 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhcc
Confidence 456888999999999999999999988877778888888888888766
No 138
>PLN02939 transferase, transferring glycosyl groups
Probab=36.70 E-value=1.9e+02 Score=33.62 Aligned_cols=87 Identities=26% Similarity=0.360 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHh----hhH-------------HHHHhHHHHHHHHHhhhhHh
Q 018324 225 LSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELR----TLS-------------AEMNQLQSELRLARSFVAER 287 (358)
Q Consensus 225 LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelR----a~~-------------Ae~~q~~~el~~ar~li~er 287 (358)
+-+++=.||.-| |-.|.|||-+.+.-...|+|| .|. --++.+|+.+++.+..+.++
T Consensus 298 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (977)
T PLN02939 298 WWEKVENLQDLL-------DRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQAS 370 (977)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555 345777777777777777665 111 12366889999999999999
Q ss_pred HHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHH
Q 018324 288 EAEVLRVRNTNNQYVEENERLRAILGEWSTRAAK 321 (358)
Q Consensus 288 ~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raak 321 (358)
|+||+.-- .-|.++-+-+++.|+.-+.+..|
T Consensus 371 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 371 DHEIHSYI---QLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhc
Confidence 99986433 34777777778887765555544
No 139
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=36.57 E-value=1.8e+02 Score=25.11 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=36.7
Q ss_pred HhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhhc
Q 018324 286 EREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQ 346 (358)
Q Consensus 286 er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~~ 346 (358)
.=.+++++++.....|.+.-..+|.-|+.=+.++..-+.-.|.|=+...+.-+.+.++|.+
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e 67 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREE 67 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344445555555555555556666666666666666666666666666666666666654
No 140
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=36.30 E-value=2.3e+02 Score=30.67 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=23.4
Q ss_pred HHHHHHhHHhhHH----------HHHHHHHhhhhcccCCCC-CchhhHHhhhh
Q 018324 216 QYQRENLHFLSEE----------ILRLQECLSKYEQSDDGS-TPQVDLAHLLA 257 (358)
Q Consensus 216 rYLkdHNa~LSkr----------IL~Lq~~l~kye~~~~g~-t~qvdl~h~la 257 (358)
+|-|+|..++++. +..||++|.|-....... +-.+||...+.
T Consensus 238 k~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ 290 (575)
T KOG4403|consen 238 KKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD 290 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh
Confidence 5778898888875 455555555433332221 44555554443
No 141
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.26 E-value=3.6e+02 Score=25.09 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHhHHhhHHHHHHHHHh
Q 018324 210 EQMALLQYQRENLHFLSEEILRLQECL 236 (358)
Q Consensus 210 KQADLIrYLkdHNa~LSkrIL~Lq~~l 236 (358)
+||+|+.-|+.=+...=+++=.|..++
T Consensus 13 ~qa~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 13 RQAQLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777776666666666666666666
No 142
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=36.14 E-value=2.5e+02 Score=34.87 Aligned_cols=98 Identities=21% Similarity=0.264 Sum_probs=76.0
Q ss_pred HhhHHHHHHHHHhhhhcccC-----CC----------CCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhH
Q 018324 224 FLSEEILRLQECLSKYEQSD-----DG----------STPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAERE 288 (358)
Q Consensus 224 ~LSkrIL~Lq~~l~kye~~~-----~g----------~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~ 288 (358)
.+=++++.|..+++.+.+.. ++ ++.-+.+-+.+++=++++-.+.-+|.++|.|=+-.--++...+
T Consensus 56 ~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~ 135 (1822)
T KOG4674|consen 56 ELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQK 135 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666555442 11 1233466777888888888999999999988888888888888
Q ss_pred HHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHH
Q 018324 289 AEVLRVRNTNNQYVEENERLRAILGEWSTRAAK 321 (358)
Q Consensus 289 ~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raak 321 (358)
+||..+...|.-|-+++.-+++.+.|-++|-..
T Consensus 136 ~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e 168 (1822)
T KOG4674|consen 136 AELEALESENKDLNDQLKSSTKTLSELEARLQE 168 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999988653
No 143
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=36.01 E-value=1.2e+02 Score=27.19 Aligned_cols=81 Identities=23% Similarity=0.299 Sum_probs=45.4
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHh
Q 018324 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRN 296 (358)
Q Consensus 217 YLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~ 296 (358)
|++.+|..|+..+=.-+..++.=...-.....|.... .++.+.-..+--+|..++..+.+++..|+..|.++..
T Consensus 16 ~~~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l------~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ 89 (135)
T TIGR03495 16 WQSQRLRNARADLERANRVLKAQQAELASKANQLIVL------LALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKR 89 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777776666666633222211111222211 1222222333445666677788899999999998864
Q ss_pred hhhhhhhHhHHHHH
Q 018324 297 TNNQYVEENERLRA 310 (358)
Q Consensus 297 ~n~q~~eEn~rlRa 310 (358)
||+-||+
T Consensus 90 -------ENe~lR~ 96 (135)
T TIGR03495 90 -------ENEDLRR 96 (135)
T ss_pred -------cCHHHHH
Confidence 5666664
No 144
>PF03653 UPF0093: Uncharacterised protein family (UPF0093); InterPro: IPR005265 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments). There is some indirect indication of a link between this protein and the function or assembly of cytochromes: in Escherichia coli, strains overproducing this protein turn pink, perhaps because of an excess of accumulated haems [].
Probab=35.92 E-value=3.1e+02 Score=24.28 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=50.1
Q ss_pred HHHHHHHHHHH-HHHHHHHhHHHh--hhHHHHHHHhhcc---cccchhhhhHHHHHHHHHHHHh---hccccccHHHHHH
Q 018324 79 VILLALTGIFQ-QYFVYQVQKIRL--QGYYSFSQKLKHI---VRLPFAITAYGTAAMLLVIVWR---PHISILSISTLLR 149 (358)
Q Consensus 79 v~LWlLt~l~d-~yvq~qH~KlRl--~GYl~FYR~Tr~l---kRlPl~IvSlGNa~LLLI~~~~---~~~~~Ls~~~lLr 149 (358)
++.|+...+.- +.+.+|.+..-. ..+-.|-..++++ .-.|-++.+.+...++++.... ....|+.++..+
T Consensus 16 vi~W~aGl~yLprl~v~~~~~~~~~~~~~~~l~~m~rrl~~~I~~PAmilt~~~G~~ll~~~~~~~~~~~~Wl~vKL~~- 94 (147)
T PF03653_consen 16 VISWMAGLFYLPRLFVYHAEASDGSEEFYERLAIMERRLYRIIMTPAMILTWISGLLLLFLNPGLGWFSSPWLHVKLVL- 94 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhcCcHHHHHHHH-
Confidence 45677666533 344444332211 2355554444443 3459999999998666555332 223788887555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 018324 150 IIMLIEAICAASFMSVYIGYVHQYNSLN 177 (358)
Q Consensus 150 iil~LEli~al~~li~YIvkVrrFNk~k 177 (358)
+++ ...+.+..-...+||++..
T Consensus 95 V~~------L~~~H~~~~~~~k~~~~~~ 116 (147)
T PF03653_consen 95 VLL------LVAYHGWCGRYLKRLARGE 116 (147)
T ss_pred HHH------HHHHHHHHHHHHHHHhCCC
Confidence 222 3334444555677787744
No 145
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=35.69 E-value=4.4e+02 Score=28.86 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=44.9
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHH
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERAL 326 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~al 326 (358)
|.-.+..++++++.||...+....+-..+.+.+...+..-.+|++-|..-+.+...|...||--+
T Consensus 165 e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 165 EVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666667777777777666666666666666676677777777777777777777777433
No 146
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=35.40 E-value=3.7e+02 Score=28.49 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=16.6
Q ss_pred hchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhh
Q 018324 258 ARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNN 299 (358)
Q Consensus 258 ~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~ 299 (358)
++++.|.....|..++.++++..+--.+.=+++|..++...+
T Consensus 35 a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~ 76 (420)
T COG4942 35 ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIA 76 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333333333333333333
No 147
>PRK15396 murein lipoprotein; Provisional
Probab=35.11 E-value=1e+02 Score=25.35 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=23.6
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHH
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLR 293 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~ 293 (358)
++-+|.++.+|+.++...+|+-+..=..|..|
T Consensus 33 qV~~L~~kvdql~~dv~~~~~~~~~a~~eA~r 64 (78)
T PRK15396 33 DVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888877665555544
No 148
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=34.66 E-value=1.4e+02 Score=23.18 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=25.9
Q ss_pred HhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHH
Q 018324 286 EREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALE 327 (358)
Q Consensus 286 er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale 327 (358)
....+++.+.....+--+||++|+.....|+. -+++|..-+
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar 68 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIAK 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHH
Confidence 44455556666666667788888888777776 344554433
No 149
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=34.54 E-value=2.9e+02 Score=29.83 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=16.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhh
Q 018324 39 IFGSVVYCFVLAGYAILAAGTTW 61 (358)
Q Consensus 39 ~~g~~~y~~~L~~yA~~~~~~pw 61 (358)
-+.+.+|+++|+.|+.++..-|.
T Consensus 355 ~~~~~~~fl~l~~~~~~~~~~~~ 377 (743)
T TIGR00870 355 HSASYLYFLYLIIFTSVAYYRPT 377 (743)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 34567777777888887777664
No 150
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.43 E-value=5e+02 Score=28.07 Aligned_cols=78 Identities=36% Similarity=0.424 Sum_probs=40.9
Q ss_pred hchhHHhhhHHHHHhHHHHHHHHHhhhh--HhHHHH--HHHHhhhhhhhhHhHHHHHHHhhhhhhHHHH-------HHHH
Q 018324 258 ARDQELRTLSAEMNQLQSELRLARSFVA--EREAEV--LRVRNTNNQYVEENERLRAILGEWSTRAAKL-------ERAL 326 (358)
Q Consensus 258 ~r~qelRa~~Ae~~q~~~el~~ar~li~--er~~e~--~~~r~~n~q~~eEn~rlRa~l~Ews~raakl-------e~al 326 (358)
.|+||+||=.+ +..|-+.-|-++. ||++.+ .-+.+..+|-.+||++||-..---..-+.|| +-.|
T Consensus 266 ~reqElraeE~----l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~L 341 (502)
T KOG0982|consen 266 RREQELRAEES----LSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLL 341 (502)
T ss_pred HHhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 47777773211 1233444444443 333332 2344555677788888887665555555554 3445
Q ss_pred HHhhhccHHHHHH
Q 018324 327 EVERMSNIELQKK 339 (358)
Q Consensus 327 e~er~~~~~~~~~ 339 (358)
|+-|+--.+.||.
T Consensus 342 E~lrlql~~eq~l 354 (502)
T KOG0982|consen 342 EALRLQLICEQKL 354 (502)
T ss_pred HHHHHHHHHHHHH
Confidence 6555554444444
No 151
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=34.38 E-value=4.6e+02 Score=25.74 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=29.4
Q ss_pred hhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHH
Q 018324 256 LAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVR 295 (358)
Q Consensus 256 la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r 295 (358)
-++.+.|+++|.-|++.++......+..|++=+-++..+.
T Consensus 84 ~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 84 AVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455668888888888888888888877777666665554
No 152
>PRK11281 hypothetical protein; Provisional
Probab=34.28 E-value=8.6e+02 Score=28.89 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=38.5
Q ss_pred hHHhhHHHHHHHHHhhhhcccCC-------CCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhh
Q 018324 222 LHFLSEEILRLQECLSKYEQSDD-------GSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFV 284 (358)
Q Consensus 222 Na~LSkrIL~Lq~~l~kye~~~~-------g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li 284 (358)
....-+++=..+.++.+.++..+ .+.+..+|+..|+..+++|-+..+.+++..+++...++..
T Consensus 89 l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~P 158 (1113)
T PRK11281 89 LAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQP 158 (1113)
T ss_pred HHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 33344455566666666665321 2234456888888888888777777777766655444433
No 153
>PHA02702 ORF033 IMV membrane protein; Provisional
Probab=34.22 E-value=1.2e+02 Score=25.22 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCC
Q 018324 146 TLLRIIMLIEAICAASF----MSVYIGYVHQYNSL 176 (358)
Q Consensus 146 ~lLriil~LEli~al~~----li~YIvkVrrFNk~ 176 (358)
...|++..+|.+..+.+ ++.|..+|++-|+.
T Consensus 41 ~~~Rvltvle~va~l~~IPgtIiLY~aYir~L~~~ 75 (78)
T PHA02702 41 GALRVLTVLDFVSLLTTIPCTIILYFLCMQALNSR 75 (78)
T ss_pred cchhHHHHHHHHHHHHHhchHHHHHHHHHHHhccc
Confidence 34467777787776655 47899999999873
No 154
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=34.16 E-value=5.3e+02 Score=26.45 Aligned_cols=82 Identities=15% Similarity=0.268 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhccc-cccHHHHHHHHHHH
Q 018324 76 SCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHIS-ILSISTLLRIIMLI 154 (358)
Q Consensus 76 y~~v~LWlLt~l~d~yvq~qH~KlRl~GYl~FYR~Tr~lkRlPl~IvSlGNa~LLLI~~~~~~~~-~Ls~~~lLriil~L 154 (358)
+.=+.+.++.|++-..++..+.|.+-+ .-..+.|..+.++|+.....|-|+ .+.+..+.++.+
T Consensus 121 ~l~~~~~i~IG~l~~~~~~~~~k~~~~--------------~~Yl~fs~~~~iiLia~i~lP~fa~~mn~~RLy~itl-- 184 (367)
T PF09971_consen 121 HLFIQFFIIIGFLALILKRIYKKIKFN--------------IEYLAFSLVSLIILIASIVLPFFASVMNPTRLYQITL-- 184 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh--------------HHHHHHHHHHHHHHHHHHhccchhhhcCHHHHHHHHH--
Confidence 333456777888888888888877622 345667777777777766677774 788776664332
Q ss_pred HHHHHHHHHHH-HHHHHHHhcC
Q 018324 155 EAICAASFMSV-YIGYVHQYNS 175 (358)
Q Consensus 155 Eli~al~~li~-YIvkVrrFNk 175 (358)
+..+|++++ ++.-+.-+||
T Consensus 185 --i~LAPf~iiG~~~~~~~i~k 204 (367)
T PF09971_consen 185 --IFLAPFFIIGGITLFKLINK 204 (367)
T ss_pred --HHHHHHHHHHHHHHHHHHHH
Confidence 345555544 3333333333
No 155
>PF07782 DC_STAMP: DC-STAMP-like protein; InterPro: IPR012858 This group of sequences is similar to a region of the dendritic cell-specific transmembrane protein (DC-STAMP, Q9H295 from SWISSPROT). This is thought to be a novel receptor protein that shares no identity with other multimembrane-spanning proteins []. It is thought to have seven putative transmembrane regions [], two of which are found in the region featured in this family. DC-STAMP is also described as having potential N-linked glycosylation sites and a potential phosphorylation site for PKC [], but these are not conserved. ; GO: 0016021 integral to membrane
Probab=34.11 E-value=3.7e+02 Score=24.54 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018324 142 LSISTLLRIIMLIEAICAASFMSVYIGYVHQY 173 (358)
Q Consensus 142 Ls~~~lLriil~LEli~al~~li~YIvkVrrF 173 (358)
.+...+..+.+..=+++.++++-.|+.+.|+-
T Consensus 142 p~~~~~~~i~~l~~l~~ll~~le~Y~~RLR~~ 173 (191)
T PF07782_consen 142 PDYSVYIQIGLLYLLLWLLVLLEPYALRLRRV 173 (191)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455565666667777888888899988874
No 156
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=33.71 E-value=76 Score=25.28 Aligned_cols=43 Identities=23% Similarity=0.427 Sum_probs=31.3
Q ss_pred hhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHH------HHHHHHHH
Q 018324 284 VAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAA------KLERALEV 328 (358)
Q Consensus 284 i~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raa------kle~ale~ 328 (358)
++=-+.+|..+...|..-+. ++-..+|..|..|.- +|..||..
T Consensus 25 Lg~~~~dI~~i~~~~~~~~~--eq~~~mL~~W~~r~g~~at~~~L~~AL~~ 73 (84)
T cd08317 25 LGVSETDIDLIKAENPNSLA--QQAQAMLKLWLEREGKKATGNSLEKALKK 73 (84)
T ss_pred cCCCHHHHHHHHHHCCCCHH--HHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 34457889999987765554 788999999998853 56666653
No 157
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=33.69 E-value=14 Score=36.09 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=0.0
Q ss_pred hhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHH
Q 018324 283 FVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERA 325 (358)
Q Consensus 283 li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~a 325 (358)
-|.|-+-.|..+|..=.--++||+|||..-..|+++.|+|...
T Consensus 123 ~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL~k~ 165 (243)
T PF08961_consen 123 RIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARLLKG 165 (243)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566677788888888889999999999999999999999443
No 158
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=33.44 E-value=3.6e+02 Score=27.71 Aligned_cols=57 Identities=28% Similarity=0.332 Sum_probs=40.6
Q ss_pred hhhhchhHHhhhHHHHHhHHHHHHHHHhh-hhHhHHHHHHHHhhhhh-h--hhHhHHHHHH
Q 018324 255 LLAARDQELRTLSAEMNQLQSELRLARSF-VAEREAEVLRVRNTNNQ-Y--VEENERLRAI 311 (358)
Q Consensus 255 ~la~r~qelRa~~Ae~~q~~~el~~ar~l-i~er~~e~~~~r~~n~q-~--~eEn~rlRa~ 311 (358)
-|++-+..++.+-+++.+.++.+..+++- ++..+.|..|....++. + .+|.++.++.
T Consensus 99 ~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a 159 (352)
T COG1566 99 ALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAA 159 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 35555666777777777777888888884 77778888887777744 3 4777777773
No 159
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=33.28 E-value=9e+02 Score=28.81 Aligned_cols=83 Identities=24% Similarity=0.325 Sum_probs=42.3
Q ss_pred HhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhh---hhhchhHH-------hhhHHHHHhHHHHHH
Q 018324 209 DEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHL---LAARDQEL-------RTLSAEMNQLQSELR 278 (358)
Q Consensus 209 EKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~---la~r~qel-------Ra~~Ae~~q~~~el~ 278 (358)
..|-+.|.-.++-...|.+++=..+...+.+... +++-+--+..+ ..+++.|+ +++.-|+|++..|.+
T Consensus 284 ~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k--~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~ 361 (1074)
T KOG0250|consen 284 NNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQK--LTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIR 361 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666677777777666666555432 33322222222 23344444 345555555555555
Q ss_pred HHHhhhhHhHHHHHH
Q 018324 279 LARSFVAEREAEVLR 293 (358)
Q Consensus 279 ~ar~li~er~~e~~~ 293 (358)
.+-+-|.+-.+++-+
T Consensus 362 ~~~n~i~~~k~~~d~ 376 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDR 376 (1074)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555444444433
No 160
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=33.12 E-value=1.2e+02 Score=29.15 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.7
Q ss_pred HHHHHHHhhhhhhhhHhHHHHHH
Q 018324 289 AEVLRVRNTNNQYVEENERLRAI 311 (358)
Q Consensus 289 ~e~~~~r~~n~q~~eEn~rlRa~ 311 (358)
.||..++..|+.-.+||+.||..
T Consensus 55 ~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 55 NEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999975
No 161
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=33.04 E-value=4.5e+02 Score=25.21 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=28.1
Q ss_pred hhhHHHHHHHhhcccccchhhhhHHHHHHHHHHHHh
Q 018324 101 LQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWR 136 (358)
Q Consensus 101 l~GYl~FYR~Tr~lkRlPl~IvSlGNa~LLLI~~~~ 136 (358)
++|+..+.+.+---+|+|+-.-=.|+..+-++.++.
T Consensus 117 l~Gf~ayl~~Lts~erlp~s~~ff~t~l~Tiy~~~k 152 (201)
T COG5102 117 LLGFRAYLEGLTSKERLPHSSWFFGTTLLTIYVVLK 152 (201)
T ss_pred HHhHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 468888888888889999877777777777766665
No 162
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=32.98 E-value=38 Score=36.86 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCC
Q 018324 209 DEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDD 244 (358)
Q Consensus 209 EKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~ 244 (358)
+.+...++=|.+....+.+++=-|..+|..|+....
T Consensus 395 ~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~ 430 (722)
T PF05557_consen 395 EALKKLIRRLERQKALATKERDYLRAQLKSYDKEET 430 (722)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 335556677777888888888899999999997753
No 163
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=32.80 E-value=2.7e+02 Score=22.59 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHh
Q 018324 273 LQSELRLARSFVAEREAEVLRVRNTNNQYVEEN 305 (358)
Q Consensus 273 ~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn 305 (358)
.+.+++..+..|.+.-.+++++...|.+.++..
T Consensus 82 ~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~ 114 (143)
T PF05130_consen 82 EREELQALWRELRELLEELQELNERNQQLLEQA 114 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777778888888888888888776654
No 164
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=32.52 E-value=2.9e+02 Score=27.77 Aligned_cols=83 Identities=27% Similarity=0.367 Sum_probs=54.3
Q ss_pred hhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhh--------------cccCCCCC-ch-----------hhHHhhhhhch
Q 018324 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKY--------------EQSDDGST-PQ-----------VDLAHLLAARD 260 (358)
Q Consensus 207 LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~ky--------------e~~~~g~t-~q-----------vdl~h~la~r~ 260 (358)
+-||+.+ +..||+....|..++-.|+++|..- ...+|++. |. ..-+++|.+=+
T Consensus 135 ~~eK~~e-lEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG 213 (302)
T PF09738_consen 135 YREKIRE-LERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAG 213 (302)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccC
Confidence 3455555 4777788888888888888888544 12223222 11 25567777762
Q ss_pred -h----HHhhhHHHHHhHHHHHHHHHhhhhHhHHH
Q 018324 261 -Q----ELRTLSAEMNQLQSELRLARSFVAEREAE 290 (358)
Q Consensus 261 -q----elRa~~Ae~~q~~~el~~ar~li~er~~e 290 (358)
. -||-+.-|.+.|.++++-.+.-+.++.++
T Consensus 214 ~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~~ 248 (302)
T PF09738_consen 214 DGSLDVRLKKLADEKEELLEQVRKLKLQLEERQSE 248 (302)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 34688888888888888888777766544
No 165
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=32.36 E-value=2.8e+02 Score=22.70 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=38.0
Q ss_pred HHHhHHHHHHHHHhhh----hHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhH------HHHHHHHHH
Q 018324 269 EMNQLQSELRLARSFV----AEREAEVLRVRNTNNQYVEENERLRAILGEWSTRA------AKLERALEV 328 (358)
Q Consensus 269 e~~q~~~el~~ar~li----~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~ra------akle~ale~ 328 (358)
+++.+-..|-.=|--+ +=-+++|.+++..|.-.+ .+..+++|-.|..|. .+|-.||+.
T Consensus 4 ~L~~la~~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~l--~eQv~~mL~~W~~r~G~~ATv~~L~~aL~~ 71 (83)
T cd08319 4 ELNQLAQRLGPEWEQVLLDLGLSQTDIYRCKENHPHNV--QSQIVEALVKWRQRFGKKATVQSLIQSLKA 71 (83)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHhCCCCH--HHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3444444444333333 445899999999666544 567899999999883 455555554
No 166
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=32.22 E-value=2.2e+02 Score=21.45 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=34.7
Q ss_pred HHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHH
Q 018324 279 LARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERA 325 (358)
Q Consensus 279 ~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~a 325 (358)
+||.-=..+...+..+.........||+.|+..+..+......|...
T Consensus 16 AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 16 AARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566777788888888888888888888888887777777643
No 167
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.91 E-value=3.4e+02 Score=29.23 Aligned_cols=28 Identities=39% Similarity=0.489 Sum_probs=16.7
Q ss_pred CCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHH
Q 018324 243 DDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLAR 281 (358)
Q Consensus 243 ~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar 281 (358)
-+|+||..-| |+|.|++.+++.|+....
T Consensus 52 iegDTP~DTl-----------rTlva~~k~~r~~~~~l~ 79 (472)
T TIGR03752 52 IEGDTPADTL-----------RTLVAEVKELRKRLAKLI 79 (472)
T ss_pred CCCCCccchH-----------HHHHHHHHHHHHHHHHHH
Confidence 4899998754 444555555555544443
No 168
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=31.89 E-value=5.8e+02 Score=26.19 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=9.0
Q ss_pred HHHhHHhhHHHHHHHHHh
Q 018324 219 RENLHFLSEEILRLQECL 236 (358)
Q Consensus 219 kdHNa~LSkrIL~Lq~~l 236 (358)
+.....|..++-+|+..+
T Consensus 103 ~~~~~~~~~~~~rL~a~~ 120 (457)
T TIGR01000 103 EQQLDNLKDQKKSLDTLK 120 (457)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555544
No 169
>PF05392 COX7B: Cytochrome C oxidase chain VIIB; InterPro: IPR008433 Cytochrome oxidase subunit VIIB is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. The X-ray structure of azide-bound fully oxidized cytochrome c oxidase from bovine heart at 2.9 A resolution has been determined [].; GO: 0004129 cytochrome-c oxidase activity, 0005746 mitochondrial respiratory chain; PDB: 3AG2_X 3ASO_K 3ABL_X 1V55_K 1OCR_K 2DYS_X 1OCO_X 2EIK_X 3AG1_K 2Y69_X ....
Probab=31.54 E-value=41 Score=28.04 Aligned_cols=33 Identities=18% Similarity=0.561 Sum_probs=22.5
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhccccccch
Q 018324 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (358)
Q Consensus 39 ~~g~~~y~~~L~~yA~~~~~~pw~~~~~~~~~~ 71 (358)
++||+.||+..-+|.+.-.+.-|-+.|+-...|
T Consensus 42 L~~Ga~FC~~~W~y~~TQ~GIeWNlSPVGRVtP 74 (80)
T PF05392_consen 42 LASGATFCVAVWTYVATQIGIEWNLSPVGRVTP 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHSS------STTTS--
T ss_pred eecccchhhhhHhhhheecceeecCCcccccCc
Confidence 679999999999999999999999999866665
No 170
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=31.20 E-value=2.7e+02 Score=22.20 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=9.4
Q ss_pred hhhhHhHHHHHHHHh
Q 018324 282 SFVAEREAEVLRVRN 296 (358)
Q Consensus 282 ~li~er~~e~~~~r~ 296 (358)
..|+|+|..|.+++.
T Consensus 5 ~~l~EKDe~Ia~L~e 19 (74)
T PF12329_consen 5 KKLAEKDEQIAQLME 19 (74)
T ss_pred HHHHhHHHHHHHHHH
Confidence 356677777766654
No 171
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=31.20 E-value=4.8e+02 Score=26.23 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=34.2
Q ss_pred hhhHHHHHh-HHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHH
Q 018324 264 RTLSAEMNQ-LQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKIST 342 (358)
Q Consensus 264 Ra~~Ae~~q-~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~ 342 (358)
+++..|++. =+.||+.+|.-|++-+.+|...+ .-+.|-..+-..++.+++.-.-.-.|++.+|.+
T Consensus 192 ~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~--------------~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 192 KQLEDELEDCDPTELDRAKEKLKKLLQEIMIKV--------------KKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 13466666666666665555444 444444444444555555544445555555555
Q ss_pred hhh
Q 018324 343 RRN 345 (358)
Q Consensus 343 ~r~ 345 (358)
.+.
T Consensus 258 ae~ 260 (312)
T smart00787 258 AEK 260 (312)
T ss_pred HHH
Confidence 444
No 172
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=30.67 E-value=2e+02 Score=28.65 Aligned_cols=74 Identities=22% Similarity=0.224 Sum_probs=53.4
Q ss_pred hHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHh---hhhhhHHHHHHHHHHhhhccH
Q 018324 261 QELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILG---EWSTRAAKLERALEVERMSNI 334 (358)
Q Consensus 261 qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~---Ews~raakle~ale~er~~~~ 334 (358)
+++..+.++++..+.+|..++..+++=+..++.++..-+.-+.|.++|...+. .--.||.+|=..|..|+..=.
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 45566677777778888888888888888888887777777778887775544 345567777777877776543
No 173
>PRK15396 murein lipoprotein; Provisional
Probab=30.63 E-value=1.3e+02 Score=24.82 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhH
Q 018324 269 EMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENE 306 (358)
Q Consensus 269 e~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~ 306 (358)
+++||++++...-+-++.=.++++.+|..=+.=-+|.+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~ 63 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAA 63 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555666666654444334433
No 174
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=30.56 E-value=4.8e+02 Score=30.02 Aligned_cols=94 Identities=21% Similarity=0.237 Sum_probs=47.7
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHH
Q 018324 214 LLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLR 293 (358)
Q Consensus 214 LIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~ 293 (358)
-++.|...+..++.++.+....+..-+-...+-..+|| ..|+---+|.-+.-.+.|-|-+|++-.+--+++
T Consensus 164 r~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvd--ErlqlhlkermaAle~kn~L~~e~~s~kk~l~~------- 234 (916)
T KOG0249|consen 164 RTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVD--ERLQLHLKERMAALEDKNRLEQELESVKKQLEE------- 234 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 35667777888888888877766322222233345666 333333334434444444455554444333322
Q ss_pred HHhhhhhhhhHhHHHHHHHhhhh
Q 018324 294 VRNTNNQYVEENERLRAILGEWS 316 (358)
Q Consensus 294 ~r~~n~q~~eEn~rlRa~l~Ews 316 (358)
.+-..++...++++||..++.-.
T Consensus 235 ~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 235 MRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Confidence 22223445556666666555443
No 175
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=29.92 E-value=2.9e+02 Score=22.17 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=31.9
Q ss_pred HhHHHHHHHHHhhhhHhHHHHHHHHh-------hhhhhhhHhHHHHHHHhhhhhhHHHHHH
Q 018324 271 NQLQSELRLARSFVAEREAEVLRVRN-------TNNQYVEENERLRAILGEWSTRAAKLER 324 (358)
Q Consensus 271 ~q~~~el~~ar~li~er~~e~~~~r~-------~n~q~~eEn~rlRa~l~Ews~raakle~ 324 (358)
++|.+-+..|=--|+-=.-|+..++. .|.+-.+||++|+.--..|..|--.|=.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333444444444 4677778888999888889888665533
No 176
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=29.42 E-value=5.2e+02 Score=24.88 Aligned_cols=40 Identities=33% Similarity=0.336 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHH
Q 018324 288 EAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALE 327 (358)
Q Consensus 288 ~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale 327 (358)
..++++|+.....-.+|+++|-+-+.|-...+++|+.+-+
T Consensus 60 ee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~ 99 (246)
T PF00769_consen 60 EEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESE 99 (246)
T ss_dssp HHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666666665444
No 177
>PF14645 Chibby: Chibby family
Probab=29.38 E-value=92 Score=27.07 Aligned_cols=38 Identities=42% Similarity=0.471 Sum_probs=21.4
Q ss_pred HHHHHHhhhhhhhhHhHH-------HHHHHhhhhhhHHHHHHHHH
Q 018324 290 EVLRVRNTNNQYVEENER-------LRAILGEWSTRAAKLERALE 327 (358)
Q Consensus 290 e~~~~r~~n~q~~eEn~r-------lRa~l~Ews~raakle~ale 327 (358)
+.++++..|.|..|||.- |=.+|-|=.+++..+|..||
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l~ 116 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKELE 116 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444444444 44667777777776666554
No 178
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=29.22 E-value=1.6e+02 Score=26.73 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccccch
Q 018324 44 VYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (358)
Q Consensus 44 ~y~~~L~~yA~~~~~~pw~~~~~~~~~~ 71 (358)
+-+++|+||+++.+..-+-=......+|
T Consensus 2 ir~liL~~~~~l~~~l~~sG~i~~YI~P 29 (182)
T PF09323_consen 2 IRFLILLGFGILLFYLILSGKILLYIHP 29 (182)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHhCc
Confidence 3467899999998887653333344555
No 179
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=28.97 E-value=6.1e+02 Score=25.49 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=55.4
Q ss_pred HHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 268 AEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 268 Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
.|+..+.+||...-+.+..|...+..-..--.|+.+|++-+=..|.+-......=.+....+|+.+ |+..|+.+...
T Consensus 92 eelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se~rv~~-el~~K~~~~k~ 168 (268)
T PF11802_consen 92 EELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSESRVFQ-ELKTKIEKIKE 168 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHH-HHHHHHHHHHH
Confidence 456667778888888888888888888888889999999888888766555555455556666653 66666655543
No 180
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=28.87 E-value=3.9e+02 Score=28.55 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=10.3
Q ss_pred HHHHHHhHHhhHHHHHHHHH
Q 018324 216 QYQRENLHFLSEEILRLQEC 235 (358)
Q Consensus 216 rYLkdHNa~LSkrIL~Lq~~ 235 (358)
..+++.|..|..++-+|+..
T Consensus 320 ~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 320 EHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 44455555555555555544
No 181
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=28.77 E-value=2.6e+02 Score=22.88 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=13.8
Q ss_pred hHHHHHHHhhhhhhHHHHHHH
Q 018324 305 NERLRAILGEWSTRAAKLERA 325 (358)
Q Consensus 305 n~rlRa~l~Ews~raakle~a 325 (358)
.+.-..+-+||..-|.+++|-
T Consensus 200 ~~~~~~~~~ew~~~A~viDR~ 220 (237)
T PF02932_consen 200 QDEEEEIKEEWKFVAMVIDRL 220 (237)
T ss_dssp HHHHHHHHHHHHSTSHHHHHH
T ss_pred ccccccccccccccHHHHHHH
Confidence 333345557888888888764
No 182
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=28.77 E-value=3.7e+02 Score=27.63 Aligned_cols=49 Identities=27% Similarity=0.391 Sum_probs=39.5
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhh
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWST 317 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~ 317 (358)
|.|+..++++.++.+.+.+-.-+.+|..++.+| .||.+.....++|-..
T Consensus 274 eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I-------seeLe~vK~emeerg~ 322 (359)
T PF10498_consen 274 EYRSAQDELSEVQEKYKQASEGVSERTRELAEI-------SEELEQVKQEMEERGS 322 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHhcC
Confidence 678999999999999999999999999888876 4666667666766543
No 183
>KOG3402 consensus Predicted membrane protein [Function unknown]
Probab=28.66 E-value=39 Score=29.07 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=25.5
Q ss_pred hhccCcccCCcC------cccchhhHHHHHHHHHHHHH
Q 018324 24 ILHEAPLLGHRK------SHSIFGSVVYCFVLAGYAIL 55 (358)
Q Consensus 24 ~~~e~p~~~~r~------~~~~~g~~~y~~~L~~yA~~ 55 (358)
.+--.|-+.||. -||++|..++.|+|-+|+..
T Consensus 40 ~af~~pa~~~r~QIr~YVvrSavGf~fw~ivLsaW~~~ 77 (101)
T KOG3402|consen 40 VAFHSPAFPHRRQIRNYVVRSAVGFSFWTIVLSAWALT 77 (101)
T ss_pred HHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568888875 38999999999999998864
No 184
>PF11003 DUF2842: Protein of unknown function (DUF2842); InterPro: IPR021265 This bacterial family of proteins have no known function.
Probab=28.51 E-value=1.4e+02 Score=23.36 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=19.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHh-hhh
Q 018324 37 HSIFGSVVYCFVLAGYAILAAG-TTW 61 (358)
Q Consensus 37 ~~~~g~~~y~~~L~~yA~~~~~-~pw 61 (358)
|..+|..+-++.++.|++++++ +.+
T Consensus 1 Rk~ig~v~ll~~l~vY~~~a~~l~~~ 26 (62)
T PF11003_consen 1 RKLIGLVLLLVGLPVYAVLAVTLADW 26 (62)
T ss_pred CceehhHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888899999999888 344
No 185
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=28.45 E-value=72 Score=33.13 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=19.6
Q ss_pred hhHhHHHHHHHhhhhhhHHHHHHHHHHhhh-ccHHHHH
Q 018324 302 VEENERLRAILGEWSTRAAKLERALEVERM-SNIELQK 338 (358)
Q Consensus 302 ~eEn~rlRa~l~Ews~raakle~ale~er~-~~~~~~~ 338 (358)
-+||++|++.-++-+.--++| |+|++ |++..+-
T Consensus 38 r~EN~~LKkEN~~Lk~eVerL----E~e~l~s~V~E~v 71 (420)
T PF07407_consen 38 RMENHSLKKENNDLKIEVERL----ENEMLRSHVCEDV 71 (420)
T ss_pred HHHhHHHHHHHHHHHHHHHHH----HHHhhhhhhhhHH
Confidence 357777777666666544444 66666 5554443
No 186
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=28.44 E-value=86 Score=25.49 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 018324 152 MLIEAICAASFMSVYIGYVHQYNSLNSQPDV 182 (358)
Q Consensus 152 l~LEli~al~~li~YIvkVrrFNk~kp~PDV 182 (358)
+.+=+|+++..+++|-++-++=+.+.++|+-
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~~q~~~~~~ 36 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKTTQNTNPST 36 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCch
Confidence 3344566777789999999999998899987
No 187
>KOG4538 consensus Predicted coiled-coil protein [General function prediction only]
Probab=28.07 E-value=1.8e+02 Score=26.03 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=30.0
Q ss_pred HHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccH
Q 018324 276 ELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNI 334 (358)
Q Consensus 276 el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~ 334 (358)
|++.-+-++.++..+|..=+ .+..-+--..|++.++|+||.||-+.+
T Consensus 52 ~lr~e~~~vK~~~~~i~ek~------------~~~rqeKkqRrvEn~kRRLeNERkaEv 98 (130)
T KOG4538|consen 52 ELRAEKDMVKRVQDNIREKQ------------VQERQEKKQRRVENEKRRLENERKAEV 98 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444555566665554322 233345566789999999999998764
No 188
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=27.72 E-value=2.5e+02 Score=24.37 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=32.3
Q ss_pred HHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhh
Q 018324 267 SAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEW 315 (358)
Q Consensus 267 ~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ew 315 (358)
-..++++.+.+..-=..+++=...++.+=..|..=--||+-||..|++-
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555666777777777778888888888864
No 189
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.65 E-value=8.1e+02 Score=26.52 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=48.1
Q ss_pred HHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhh---hhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhh-
Q 018324 223 HFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLL---AARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTN- 298 (358)
Q Consensus 223 a~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~l---a~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n- 298 (358)
..|.+++-.+.+++..=++.=.+....-|+.++. ..-+.++..+.+++..++.++.....-|.+=+.++.+++...
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 473 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKI 473 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444323332223555553 333456667777777777777766666666666555543322
Q ss_pred -----hhhhhHhHHHHHHHhhh
Q 018324 299 -----NQYVEENERLRAILGEW 315 (358)
Q Consensus 299 -----~q~~eEn~rlRa~l~Ew 315 (358)
+.+++-.++++..|++-
T Consensus 474 ~~~~~~~~~~~~~~~~~~l~~~ 495 (650)
T TIGR03185 474 NAFELERAITIADKAKKTLKEF 495 (650)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 22445555666666643
No 190
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=27.25 E-value=6.9e+02 Score=26.57 Aligned_cols=79 Identities=8% Similarity=0.082 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHH
Q 018324 210 EQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREA 289 (358)
Q Consensus 210 KQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~ 289 (358)
.+.|.++|-++....--+|+-.-+..|..|.....--+|+-+.+..+. -+=.|.+|+-.++.||...++-+.+...
T Consensus 239 ar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~----lI~~Le~qLa~~~aeL~~L~~~~~p~sP 314 (434)
T PRK15178 239 MQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQ----LIAGFETQLAEAKAEYAQLMVNGLDQNP 314 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 367899999999999999999999999999988555588877653321 1223444444444444444444444444
Q ss_pred HHH
Q 018324 290 EVL 292 (358)
Q Consensus 290 e~~ 292 (358)
.|.
T Consensus 315 qV~ 317 (434)
T PRK15178 315 LIP 317 (434)
T ss_pred chh
Confidence 443
No 191
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=27.20 E-value=4.3e+02 Score=28.59 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHhhhHHHHHHHhhcc
Q 018324 40 FGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQK-----IRLQGYYSFSQKLKHI 114 (358)
Q Consensus 40 ~g~~~y~~~L~~yA~~~~~~pw~~~~~~~~~~slL~y~~v~LWlLt~l~d~yvq~qH~K-----lRl~GYl~FYR~Tr~l 114 (358)
+..++|.-+..||++..+.+-|....+..+.-|=..|.+-. +...+|.+..|+. .+-+=|+.|
T Consensus 219 is~~~~~~i~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~nh~~~~~~~~k~n~f~~~------- 286 (477)
T PRK12821 219 ISLVVYTWIILYFGIGIIIFMWVLYLVWKLKQPHNAYSLSG-----FFHRRYKHANHQFTLFVLTKENWFYLI------- 286 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchhhhhh-----hhhhhhhhcccchhhhhhhhHHHHHHH-------
Confidence 56788888999999999999998777766655555555543 3445555555542 122222222
Q ss_pred cccchhhhhHHHHHHHHHHHHhhcc----------ccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018324 115 VRLPFAITAYGTAAMLLVIVWRPHI----------SILSISTLL-RIIMLIEAICAASFMSVYIGYVHQYN 174 (358)
Q Consensus 115 kRlPl~IvSlGNa~LLLI~~~~~~~----------~~Ls~~~lL-riil~LEli~al~~li~YIvkVrrFN 174 (358)
-..++-.|++.+++=++..|.| .|+++-.+. -++..+.++++-|.+.+ +.-++++|
T Consensus 287 ---~~~~~~~~~~~~~in~~~~p~~d~~~~~~~y~~w~~~r~~~~p~~~~~~~~vi~pi~~~-~~p~~~~~ 353 (477)
T PRK12821 287 ---LNVITLAGTSLLMINIAFIPIFDTQTTGQTYAFWLLIRLLFAPAIFLLDIIVIYPILLL-LTPIMLKG 353 (477)
T ss_pred ---HHHHHHHHHHHHHHHHHhhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 2345566666666666666766 234433222 12335666666666533 33455554
No 192
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=27.19 E-value=1.2e+03 Score=28.14 Aligned_cols=55 Identities=29% Similarity=0.280 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHH
Q 018324 274 QSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEV 328 (358)
Q Consensus 274 ~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~ 328 (358)
..++..|...+.+...++.+++..-.+..+|.+.+...+.+.+.+.+.++..++.
T Consensus 867 ~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~ 921 (1353)
T TIGR02680 867 VRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGA 921 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555543
No 193
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=27.16 E-value=4e+02 Score=30.71 Aligned_cols=70 Identities=26% Similarity=0.247 Sum_probs=44.2
Q ss_pred hhHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHh
Q 018324 207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS 282 (358)
Q Consensus 207 LlEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~ 282 (358)
..++|++.|.=..+-|..||+++.+..++++.- ..+++-++.++..=+|-.|++.+....++.-|-+-|-
T Consensus 52 ~~~~~~~~i~qe~~~n~~Lsq~L~~~~~r~n~~------~~dd~~l~~l~~ql~q~~r~i~eq~~~lr~sL~l~~~ 121 (835)
T COG3264 52 EAELQAELIQQELAINDQLSQALNQQTERLNAL------ASDDRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRI 121 (835)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHHhhhh------hhhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 344566677888888999999999998888432 2334455666665566556555555555444444333
No 194
>PF10251 PEN-2: Presenilin enhancer-2 subunit of gamma secretase; InterPro: IPR019379 This entry is a short, 101 peptide protein, which is the smallest subunit of the gamma-secretase aspartyl protease complex. It catalyses the intra-membrane cleavage of a subset of type I transmembrane proteins. The other active constituents of the complex are presenilin (PS) nicastrin and anterior pharynx defective-1 (APH-1) protein. Presenilin enhancer-2 (PEN-2) adopts a hairpin orientation in the membrane with its N- and C-terminal domains facing the luminal/extracellular space. The C-terminal domain maintains PS stability within the complex [].
Probab=27.12 E-value=43 Score=28.51 Aligned_cols=21 Identities=24% Similarity=0.437 Sum_probs=17.7
Q ss_pred cccchhhHHHHHHHHHHHHHH
Q 018324 36 SHSIFGSVVYCFVLAGYAILA 56 (358)
Q Consensus 36 ~~~~~g~~~y~~~L~~yA~~~ 56 (358)
-+|.+|.+++.++|++|+++-
T Consensus 53 i~SaiG~~vw~v~l~~W~~~F 73 (94)
T PF10251_consen 53 IRSAIGFLVWTVVLISWILIF 73 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999988753
No 195
>PF14182 YgaB: YgaB-like protein
Probab=27.10 E-value=2.3e+02 Score=23.72 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhH
Q 018324 227 EEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEE 304 (358)
Q Consensus 227 krIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eE 304 (358)
.++|-||..+-+|... +.||..+--+ +++...|..|+....++..|+..=.+..+|
T Consensus 14 D~LL~LQsElERCqeI-----------------E~eL~~l~~e-----a~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTee 69 (79)
T PF14182_consen 14 DKLLFLQSELERCQEI-----------------EKELKELERE-----AELHSIQEEISQMKKELKEIQRVFEKQTEE 69 (79)
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899988777654 3444444444 555556666666666666666554444443
No 196
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=26.99 E-value=7.6e+02 Score=27.01 Aligned_cols=48 Identities=13% Similarity=0.096 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhcccccchhh
Q 018324 72 PLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAI 121 (358)
Q Consensus 72 slL~y~~v~LWlLt~l~d~yvq~qH~KlRl~GYl~FYR~Tr~lkRlPl~I 121 (358)
.++.-.-++|==++-++...-+|-++|+..- ++|=..|++++..-=-|
T Consensus 168 ~v~~~l~~~l~~l~d~~k~~sk~y~~k~~~E--~~~pt~tqkl~t~~~c~ 215 (518)
T PF10212_consen 168 AVFTQLAASLHKLHDVLKDLSKHYNQKASLE--HRLPTATQKLRTTNECI 215 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcchhhheeeccHHHH
Confidence 4666777777778888888888888888775 56667788777655444
No 197
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.87 E-value=9.3e+02 Score=27.90 Aligned_cols=119 Identities=23% Similarity=0.270 Sum_probs=81.4
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCC-chhhH--Hh------hhhh------chhHH-h----hhHHHHHhHH
Q 018324 215 LQYQRENLHFLSEEILRLQECLSKYEQSDDGST-PQVDL--AH------LLAA------RDQEL-R----TLSAEMNQLQ 274 (358)
Q Consensus 215 IrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t-~qvdl--~h------~la~------r~qel-R----a~~Ae~~q~~ 274 (358)
++=||--|+.|-+++=-|..+|.+-|++.-.+. +..++ .. .|.. +.||+ . .|...++...
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 456788899999999999999988888865443 33333 11 1111 22333 2 3334445566
Q ss_pred HHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHH
Q 018324 275 SELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIEL 336 (358)
Q Consensus 275 ~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~ 336 (358)
.|=+..+.+|.|+|-++. ...+||--|++|++-.++|=-.-..-+--.||+-..-|.-|
T Consensus 469 ~Enk~~~~~~~ekd~~l~---~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL 527 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQELL---ENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQIL 527 (861)
T ss_pred HHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHh
Confidence 888889999999998765 45688999999999888887666666666666666655543
No 198
>PF13514 AAA_27: AAA domain
Probab=26.86 E-value=8.6e+02 Score=28.18 Aligned_cols=103 Identities=25% Similarity=0.229 Sum_probs=58.1
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhh--hhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHH
Q 018324 215 LQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHL--LAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVL 292 (358)
Q Consensus 215 IrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~--la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~ 292 (358)
++-.+.....+..++-.++..+..-.+.-.......++..+ -.+....++.+..+...+..+++.++..+++.+.++.
T Consensus 298 ~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~ 377 (1111)
T PF13514_consen 298 YRKARQDLPRLEAELAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELE 377 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666665554442211011111111 1123345677788888888888888888888888887
Q ss_pred HHHhhhhh--hhhHhHHHHHHHhhhhh
Q 018324 293 RVRNTNNQ--YVEENERLRAILGEWST 317 (358)
Q Consensus 293 ~~r~~n~q--~~eEn~rlRa~l~Ews~ 317 (358)
+++.--.. -....+.|++.+..+..
T Consensus 378 ~~~~~~~~l~~~~~~~~l~~al~~~~~ 404 (1111)
T PF13514_consen 378 QLQAELAALPAPPDPEALRAALEAAQR 404 (1111)
T ss_pred HHHHHHhhCcccCCChHHHHHHHHHHh
Confidence 77665222 22334556666665544
No 199
>COG1988 Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
Probab=26.77 E-value=96 Score=28.53 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=17.3
Q ss_pred ccc-CCcCcccchhhHHHHHHHHHHHHHHHhhhh
Q 018324 29 PLL-GHRKSHSIFGSVVYCFVLAGYAILAAGTTW 61 (358)
Q Consensus 29 p~~-~~r~~~~~~g~~~y~~~L~~yA~~~~~~pw 61 (358)
+++ |||+..--+.+......++++.......|+
T Consensus 59 ~i~~gHRGfTHSl~~~~~~~~l~~~~~~~~~~~~ 92 (190)
T COG1988 59 YIRLGHRGFTHSLLFAAVALLLLGLLLFLFFLPL 92 (190)
T ss_pred HHHhcccceeehhHHHHHHHHHHHHHHHHhcCcc
Confidence 344 999987644434433344444444444444
No 200
>PF10654 DUF2481: Protein of unknown function (DUF2481) ; InterPro: IPR018916 This entry is represented by Bacteriophage A500, Gp59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.71 E-value=61 Score=28.95 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=28.1
Q ss_pred hHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhccc
Q 018324 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQS 242 (358)
Q Consensus 208 lEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~ 242 (358)
=|+|..+|.|+-.++-.+|++ ..||.+|+.-...
T Consensus 9 KerQreIIsyl~n~dl~~~~~-k~LqkeLn~Lm~~ 42 (126)
T PF10654_consen 9 KERQREIISYLVNNDLSFSKR-KELQKELNQLMNE 42 (126)
T ss_pred HHHHHHHHHHHHhCCCChHHH-HHHHHHHHHHHhc
Confidence 489999999999999999875 5788888765543
No 201
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.58 E-value=5.5e+02 Score=24.25 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=43.9
Q ss_pred hhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhh-------hhHhHHHHH-----HHhhhhhhHHHHHHHHH
Q 018324 260 DQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQY-------VEENERLRA-----ILGEWSTRAAKLERALE 327 (358)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~-------~eEn~rlRa-----~l~Ews~raakle~ale 327 (358)
..|+..+.+..++++..+...+..|++-+.+|..+..++.+. +++-++.=+ -.+|...|-++|+..+.
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~ 141 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLD 141 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhh
Confidence 344455555566666666666666666666666666655553 333333222 23456667777777777
Q ss_pred HhhhccHH
Q 018324 328 VERMSNIE 335 (358)
Q Consensus 328 ~er~~~~~ 335 (358)
.-.+|..|
T Consensus 142 ~~dv~~~e 149 (251)
T PF11932_consen 142 DADVSLAE 149 (251)
T ss_pred ccCCCHHH
Confidence 76666665
No 202
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=26.57 E-value=5.1e+02 Score=23.85 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=53.8
Q ss_pred HHh-hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018324 262 ELR-TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVER 330 (358)
Q Consensus 262 elR-a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er 330 (358)
..| -+..+.-++.+++..++.-++++.++|..++. .-.|+++.++--+-|.++|.+++|+.+
T Consensus 79 ~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~r-------aIarn~a~id~~~er~~~l~r~~ea~~ 141 (158)
T PF09486_consen 79 RYRDVLEERVRAAEAELAALRQALRAAEDEIAATRR-------AIARNDARIDVCRERIDRLRRAAEAAA 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHHHHHhH
Confidence 455 56777888999999999999999999998875 467889999999999999999999876
No 203
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.49 E-value=2.3e+02 Score=25.18 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=4.3
Q ss_pred hHHHHHhHHHHH
Q 018324 266 LSAEMNQLQSEL 277 (358)
Q Consensus 266 ~~Ae~~q~~~el 277 (358)
+..+...+.+||
T Consensus 91 l~~~~k~l~~eL 102 (169)
T PF07106_consen 91 LKKEVKSLEAEL 102 (169)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 204
>PF14142 YrzO: YrzO-like protein
Probab=26.38 E-value=56 Score=24.40 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=13.7
Q ss_pred chhHhhHHHHHHHHHH
Q 018324 206 RLSDEQMALLQYQREN 221 (358)
Q Consensus 206 ~LlEKQADLIrYLkdH 221 (358)
.=+-|||+||+.||+.
T Consensus 26 k~ikqqaeliqllkel 41 (46)
T PF14142_consen 26 KKIKQQAELIQLLKEL 41 (46)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3678999999999985
No 205
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=26.25 E-value=6.6e+02 Score=25.02 Aligned_cols=53 Identities=6% Similarity=-0.046 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018324 40 FGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQ 97 (358)
Q Consensus 40 ~g~~~y~~~L~~yA~~~~~~pw~~~~~~~~~~slL~y~~v~LWlLt~l~d~yvq~qH~ 97 (358)
.|..++|+..+.+.--.+...|.+ +.+..++|-|+++|+..-..+.+-...++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~p~~a~~~~~~~~~~~~~~~~~ 96 (366)
T PRK10245 44 LAGMFLPIASTLVSHPPPGWWWLL-----LVGWAFVWPHLAWQIASRAVDPLSREIYN 96 (366)
T ss_pred HHHhHHHHHHHHHhcccchHHHHH-----HHHHHHHhHHHHHHHHHhCCChhHHHHHH
Confidence 366777777777776666666744 45556778888888888888887766655
No 206
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=26.14 E-value=96 Score=30.40 Aligned_cols=14 Identities=36% Similarity=0.143 Sum_probs=9.7
Q ss_pred hhHhHHHHHHHhhh
Q 018324 302 VEENERLRAILGEW 315 (358)
Q Consensus 302 ~eEn~rlRa~l~Ew 315 (358)
.+||++||+-+.+-
T Consensus 72 ~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 72 EYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHH
Confidence 46788888776544
No 207
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=26.11 E-value=4.1e+02 Score=27.49 Aligned_cols=134 Identities=20% Similarity=0.164 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhcccccchhh
Q 018324 42 SVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAI 121 (358)
Q Consensus 42 ~~~y~~~L~~yA~~~~~~pw~~~~~~~~~~slL~y~~v~LWlLt~l~d~yvq~qH~KlRl~GYl~FYR~Tr~lkRlPl~I 121 (358)
|.++.+.+-|||......|. -++.--..+.+-...|+..++.-.|+....-.-=-+ |+.|++++|+=|.
T Consensus 151 slif~f~l~~~~~t~~~lp~-----CG~~C~~~Vv~~~~~~L~~g~~~~ylv~sv~Dy~fq-r~~~~K~lkMSKd----- 219 (349)
T COG4792 151 SLIFWFMLHGYANTFLYLPG-----CGLYCALPVVSFLLRLLWVGVAVGYLVFSVADYAFQ-RYQILKELKMSKD----- 219 (349)
T ss_pred HHHHHHHHHHHHHHHhhccc-----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCHH-----
Confidence 45666777788888888877 444444444555555555554444444432222222 5566666665432
Q ss_pred hhHHHHHHHHHHHHhhcccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCcccccccCCCCCCCC
Q 018324 122 TAYGTAAMLLVIVWRPHISI--LSISTLLRIIMLIEAICAASFMSVYIGYVHQYNS----LNSQPDVMKSLYSPLQPSSS 195 (358)
Q Consensus 122 vSlGNa~LLLI~~~~~~~~~--Ls~~~lLriil~LEli~al~~li~YIvkVrrFNk----~kp~PDVl~ee~s~~~ps~~ 195 (358)
-+.-++.. =+|-.- .|=|+|.. ..++-+|.++.-...+|+.+
T Consensus 220 ------------EVkRE~Kd~eG~PeiK--------------------skRRq~~~Eiqsgsl~~nVkrStviv~nPThi 267 (349)
T COG4792 220 ------------EVKREYKDMEGDPEIK--------------------SKRRQLHSEIQSGSLANNVKRSTVIVKNPTHI 267 (349)
T ss_pred ------------HHHHHHhcccCCchhh--------------------HHHHHHHHHHhcCChhhccceeeEEEecCceE
Confidence 00111111 112211 13444443 35667888888777889988
Q ss_pred CCCccccCCCc----hhHh----hHHHHHHH
Q 018324 196 LEGLRYHDGGR----LSDE----QMALLQYQ 218 (358)
Q Consensus 196 ~~ElGfrd~g~----LlEK----QADLIrYL 218 (358)
.=.++|+-|.- ++|| ||..|+-+
T Consensus 268 aI~l~Y~~gETplPlVi~k~~daqA~~i~~i 298 (349)
T COG4792 268 AICLRYKRGETPLPLVIEKGTDAQALQIVKI 298 (349)
T ss_pred EEEEeeccCCCCCCEEEEecCcHHHHHHHHH
Confidence 77889887652 5554 55444433
No 208
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=26.10 E-value=82 Score=34.31 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=33.9
Q ss_pred hHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccC
Q 018324 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSD 243 (358)
Q Consensus 208 lEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~ 243 (358)
+..|.|-|+=||+-|..+-+|+=.+..+|.+|++.+
T Consensus 372 In~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~~ 407 (557)
T PF01763_consen 372 INNQFDTIEDLKEENQDLEKKLRELESELSRYREEA 407 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667999999999999999999999999999999974
No 209
>PF15022 DUF4522: Protein of unknown function (DUF4522)
Probab=26.09 E-value=60 Score=28.51 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 316 STRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 316 s~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
|+-.-||||.-|..|+.+++.|+|.++-=+
T Consensus 71 saesiklEreyE~KrL~~lk~qena~eeiQ 100 (117)
T PF15022_consen 71 SAESIKLEREYEMKRLTKLKCQENASEEIQ 100 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 455679999999999999999999876433
No 210
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=25.89 E-value=2.1e+02 Score=28.12 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=42.5
Q ss_pred HhhHHHHHHHHHHhHH------hhHHHHHHHHHhhhhcccCCCC-----------CchhhHHhhhhhchhHHhhhHHHHH
Q 018324 209 DEQMALLQYQRENLHF------LSEEILRLQECLSKYEQSDDGS-----------TPQVDLAHLLAARDQELRTLSAEMN 271 (358)
Q Consensus 209 EKQADLIrYLkdHNa~------LSkrIL~Lq~~l~kye~~~~g~-----------t~qvdl~h~la~r~qelRa~~Ae~~ 271 (358)
+-+..+-.|..+|+.. |=.+|-.-+.+|.++.++..-. .+.+|.+.++..=+.|+|.|.++++
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566665543 3346666667777665543222 2345778889888889999999988
Q ss_pred hHH
Q 018324 272 QLQ 274 (358)
Q Consensus 272 q~~ 274 (358)
++|
T Consensus 257 ~Lq 259 (259)
T PF08657_consen 257 ELQ 259 (259)
T ss_pred hcC
Confidence 764
No 211
>TIGR02268 Myxococcus xanthus paralogous family TIGR02268. This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=25.81 E-value=52 Score=33.12 Aligned_cols=20 Identities=45% Similarity=0.607 Sum_probs=14.9
Q ss_pred HHHHHhhhhhhhhHhHHHHH
Q 018324 291 VLRVRNTNNQYVEENERLRA 310 (358)
Q Consensus 291 ~~~~r~~n~q~~eEn~rlRa 310 (358)
+++.|..|+|-.+||+|||+
T Consensus 140 ~~~~r~~~~~~~~e~~~lr~ 159 (295)
T TIGR02268 140 VVELRARNQLLEEENARLRR 159 (295)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34566677788888888886
No 212
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=25.81 E-value=1.2e+02 Score=28.51 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=38.1
Q ss_pred CCcCcccchhhHHHHHH--HHHHHHHHHhhhhhhccc-c-ccchhHHH--HHHHHHHHHHH
Q 018324 32 GHRKSHSIFGSVVYCFV--LAGYAILAAGTTWIFHPI-H-YLIPPLLC--SCGVILLALTG 86 (358)
Q Consensus 32 ~~r~~~~~~g~~~y~~~--L~~yA~~~~~~pw~~~~~-~-~~~~slL~--y~~v~LWlLt~ 86 (358)
=+|+-++..++.++.+. .+||.+-.+..+|+...+ + ...|..+. ..-+.||+...
T Consensus 132 l~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~s~ 192 (194)
T PF11833_consen 132 LNRKERKLGRAFLWTLGGLVVGLILGSLLASWLPVDIVPGPWSPEQLVSLFTYILLWLVSL 192 (194)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 36778888888888765 678888888999988765 4 34443333 33467787654
No 213
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=25.80 E-value=2.2e+02 Score=27.72 Aligned_cols=49 Identities=8% Similarity=0.121 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHHHH-Hhhcc-c-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018324 120 AITAYGTAAMLLVIV-WRPHI-S-ILSISTLLRIIMLIEAICAASFMSVYIGYVH 171 (358)
Q Consensus 120 ~IvSlGNa~LLLI~~-~~~~~-~-~Ls~~~lLriil~LEli~al~~li~YIvkVr 171 (358)
...|.|-++.++.+. +..++ . .++... +++++-.+..+.|++.|+-|-+
T Consensus 59 ~~ls~glSi~~~~~~g~~l~~~~~~i~~~~---i~~~l~~~t~~~~~~a~~rr~~ 110 (287)
T PF07760_consen 59 LALSVGLSIAIVPLIGLLLNYTPWGIRLIP---ILISLSIFTLVLSIIAYIRRRR 110 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhH---HHHHHHHHHHHHHHHHHHhccc
Confidence 367777766555442 33322 2 233333 3345555555566655554443
No 214
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=25.73 E-value=2.2e+02 Score=22.70 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=20.4
Q ss_pred cchhhhhhhhccCcccCCcCcccchhhHHHHHHHHHHHHHHHhhhh
Q 018324 16 EENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTW 61 (358)
Q Consensus 16 ~~~~~f~d~~~e~p~~~~r~~~~~~g~~~y~~~L~~yA~~~~~~pw 61 (358)
+||..|-.-+...+-..++..+.+.|.++ +++|.++++++...
T Consensus 20 ~~DP~fa~~l~~~~~~~~~~r~~~~~~~~---~v~gl~llv~G~~~ 62 (82)
T PF11239_consen 20 ADDPRFAARLRSGRPRRPSRRRRVLGVLL---VVVGLALLVAGVVL 62 (82)
T ss_pred hcCcHHHHHhccCCCCCCchhHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34555555554433333333333344333 55666666665544
No 215
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=25.56 E-value=8.9e+02 Score=26.30 Aligned_cols=100 Identities=27% Similarity=0.344 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCch--hhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhH-
Q 018324 210 EQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQ--VDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAE- 286 (358)
Q Consensus 210 KQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~q--vdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~e- 286 (358)
.|-.|..-|-.-..+|..+==-||..+ + +.-+||- -|++..=|--..|.-+..+-.+-||+|+..-|.-+..
T Consensus 198 EqEalvN~LwKrmdkLe~ekr~Lq~Kl---D--qpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~A 272 (552)
T KOG2129|consen 198 EQEALVNSLWKRMDKLEQEKRYLQKKL---D--QPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRA 272 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---c--CcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666677776666666655 3 3333332 3555333333334444444444445555444444332
Q ss_pred ---hHHHHHHHHhhhhhhhhHhHHHHHHHhh
Q 018324 287 ---REAEVLRVRNTNNQYVEENERLRAILGE 314 (358)
Q Consensus 287 ---r~~e~~~~r~~n~q~~eEn~rlRa~l~E 314 (358)
-+-+.++.|....-.-|||+||-.-|-.
T Consensus 273 qk~~~ek~~qy~~Ee~~~reen~rlQrkL~~ 303 (552)
T KOG2129|consen 273 QKSYQEKLMQYRAEEVDHREENERLQRKLIN 303 (552)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2335678888888899999999766643
No 216
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=25.41 E-value=4.4e+02 Score=22.66 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhcc
Q 018324 78 GVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHI 114 (358)
Q Consensus 78 ~v~LWlLt~l~d~yvq~qH~KlRl~GYl~FYR~Tr~l 114 (358)
..+.++++.++=-+..++.+|--+.|+..|-+..+.-
T Consensus 34 ~~~~~~~~~~~i~~~i~~~R~~~~~g~isf~~a~~~g 70 (163)
T PF13858_consen 34 GILSMVITIIFIYFAIRRYRKKYNGGFISFGQAFKVG 70 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCeeHHHHHHHH
Confidence 4444555555555555555545578999999877643
No 217
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.96 E-value=3.7e+02 Score=26.18 Aligned_cols=81 Identities=20% Similarity=0.383 Sum_probs=59.9
Q ss_pred hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhh-------hh-hhh--------------------------hHhHHHHH
Q 018324 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNT-------NN-QYV--------------------------EENERLRA 310 (358)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~-------n~-q~~--------------------------eEn~rlRa 310 (358)
.+..++..+.+++...+.||+.=+.|+..+-.. |+ .-+ ..+..+-.
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siLp 82 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSILP 82 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHHH
Confidence 567788899999999999999999999998844 11 011 12223333
Q ss_pred HH----hhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 311 IL----GEWSTRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 311 ~l----~Ews~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
|+ |-...|++.||..|-...-...+||.++.++|.
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 456678999999998888888888888888886
No 218
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=24.95 E-value=1.4e+02 Score=27.06 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHhHHhhHHH----HHHHHHhhhhccc----CCCCCchhhHHhhhhhc
Q 018324 210 EQMALLQYQRENLHFLSEEI----LRLQECLSKYEQS----DDGSTPQVDLAHLLAAR 259 (358)
Q Consensus 210 KQADLIrYLkdHNa~LSkrI----L~Lq~~l~kye~~----~~g~t~qvdl~h~la~r 259 (358)
+=..+++|+++|...+.++. ..+.+.+++|..+ +.+.+++.|+-|+|..=
T Consensus 28 ~i~~ll~yi~~~l~~i~~~w~~~~~~~~~~l~~~~~~l~~~~~~~~~~~el~~lLltG 85 (210)
T PF12896_consen 28 QIQSLLRYIKDTLDAIQEEWEEALQEFDRKLTNLADELQEKGGEGSLQDELLDLLLTG 85 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhc
Confidence 33468899999999998875 3446677777754 45668888888887653
No 219
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=24.82 E-value=1.8e+02 Score=24.46 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=12.5
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhh
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVA 285 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~ 285 (358)
++-+|.+..+|+.+++..+++-+.
T Consensus 32 ~V~~L~~kvdql~~dv~~a~aaa~ 55 (85)
T PRK09973 32 NVQTLNAKIARLEQDMKALRPQIY 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 220
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=24.70 E-value=4.1e+02 Score=22.43 Aligned_cols=64 Identities=25% Similarity=0.260 Sum_probs=36.4
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHhhhhhhcccccc----chh-HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018324 34 RKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYL----IPP-LLCSCGVILLALTGIFQQYFVYQVQK 98 (358)
Q Consensus 34 r~~~~~~g~~~y~~~L~~yA~~~~~~pw~~~~~~~~----~~s-lL~y~~v~LWlLt~l~d~yvq~qH~K 98 (358)
|+.+--..-.+..+++....+.++..|.++..+-.. .|| ++.|+- ++.++...+..|.+-.+..
T Consensus 24 r~~~l~~~~~l~Wl~~~i~~l~~~ifP~~~~~vA~~lGi~~~~n~lf~~~-i~~ll~~~~~l~~~is~le 92 (115)
T PF10066_consen 24 RKRKLRLKYSLLWLVFSIILLILSIFPNILDWVAKLLGIGRPPNLLFYLG-ILFLLVIIFSLYVRISRLE 92 (115)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444444555566667777777888888877765222 233 444443 3444445666666654443
No 221
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=24.57 E-value=3.2e+02 Score=26.64 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=12.3
Q ss_pred HHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 018324 268 AEMNQLQSELRLARSFVAEREAEVLRV 294 (358)
Q Consensus 268 Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (358)
+++++.++++..+++..++...+..+.
T Consensus 85 ~~l~~a~a~l~~~~a~~~~~~~~~~r~ 111 (310)
T PRK10559 85 KALAEAEADVAYYQVLAQEKRREAGRR 111 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455544554444444444433
No 222
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=24.35 E-value=52 Score=23.98 Aligned_cols=27 Identities=22% Similarity=0.248 Sum_probs=19.6
Q ss_pred HHHhhhhhhccccccchhHHHHHHHHH
Q 018324 55 LAAGTTWIFHPIHYLIPPLLCSCGVIL 81 (358)
Q Consensus 55 ~~~~~pw~~~~~~~~~~slL~y~~v~L 81 (358)
++...||||.|.-++..|...++-..+
T Consensus 6 aas~LPsI~VPlVGlvfPai~Mallf~ 32 (38)
T PRK11877 6 AASWLPWIFVPLVGWVFPAVFMVLLGR 32 (38)
T ss_pred hHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999888887666544333
No 223
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=24.09 E-value=4.1e+02 Score=29.16 Aligned_cols=62 Identities=24% Similarity=0.221 Sum_probs=47.9
Q ss_pred hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHH
Q 018324 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERAL 326 (358)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~al 326 (358)
.-..|++.++.++...++-|.+-+.++..+...-.|-.+|.++..+...+-..-.+..+++.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~ 386 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTV 386 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778888899999999999999999988888888888888887777766555555444443
No 224
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=24.02 E-value=1.3e+03 Score=27.58 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhHHhhH--------------------HHHHHHHHhhhhcccC---CCCCchhhHHhhhhhchhHHhhhH
Q 018324 211 QMALLQYQRENLHFLSE--------------------EILRLQECLSKYEQSD---DGSTPQVDLAHLLAARDQELRTLS 267 (358)
Q Consensus 211 QADLIrYLkdHNa~LSk--------------------rIL~Lq~~l~kye~~~---~g~t~qvdl~h~la~r~qelRa~~ 267 (358)
|++.++.+++...+|.+ ++-.++.++.+.+... .++.|.-||+..+.....+|-.+.
T Consensus 43 ~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q 122 (1109)
T PRK10929 43 QAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKS 122 (1109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 56666666655555543 4555666666544332 233466788877777777766666
Q ss_pred HHHHhHHHHHHHHHhh
Q 018324 268 AEMNQLQSELRLARSF 283 (358)
Q Consensus 268 Ae~~q~~~el~~ar~l 283 (358)
.+..+.++.++.++.-
T Consensus 123 ~~l~~~~~~~~~~~~~ 138 (1109)
T PRK10929 123 RQAQQEQDRAREISDS 138 (1109)
T ss_pred HHHHHHhhhhHHHHHH
Confidence 6666666666444333
No 225
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.98 E-value=7.4e+02 Score=24.84 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=9.3
Q ss_pred HHHHHHHhhhhhhHHH
Q 018324 306 ERLRAILGEWSTRAAK 321 (358)
Q Consensus 306 ~rlRa~l~Ews~raak 321 (358)
..|++.+++|..+..+
T Consensus 321 ~~l~~~l~~~~~~~~~ 336 (444)
T TIGR03017 321 AELREALENQKAKVLE 336 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666655443
No 226
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=23.91 E-value=7.1e+02 Score=24.56 Aligned_cols=44 Identities=32% Similarity=0.450 Sum_probs=23.5
Q ss_pred hhHhhHHHHHHHHHHhH---------------HhhHHHHHHHHHhhhhcccCCCCCchh
Q 018324 207 LSDEQMALLQYQRENLH---------------FLSEEILRLQECLSKYEQSDDGSTPQV 250 (358)
Q Consensus 207 LlEKQADLIrYLkdHNa---------------~LSkrIL~Lq~~l~kye~~~~g~t~qv 250 (358)
+-+-|..|-.|..+|+- .|..++-.++.++..-......+.|+|
T Consensus 186 l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v 244 (362)
T TIGR01010 186 LNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQV 244 (362)
T ss_pred HHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCch
Confidence 66666677777776633 334455555555554433322335655
No 227
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.90 E-value=2.4e+02 Score=21.28 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=19.9
Q ss_pred HhHHHHHHHHhhhhhhhhHhHHHHHHHhhh
Q 018324 286 EREAEVLRVRNTNNQYVEENERLRAILGEW 315 (358)
Q Consensus 286 er~~e~~~~r~~n~q~~eEn~rlRa~l~Ew 315 (358)
....+++.+...+++..+||+.|.+.++.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666777777777766666
No 228
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=23.66 E-value=6.1e+02 Score=26.05 Aligned_cols=47 Identities=11% Similarity=0.227 Sum_probs=21.2
Q ss_pred HHhHHHHHHHHHhhhhHhHHHHHHHHhhhh-hhhhH-hHHHHHHHhhhh
Q 018324 270 MNQLQSELRLARSFVAEREAEVLRVRNTNN-QYVEE-NERLRAILGEWS 316 (358)
Q Consensus 270 ~~q~~~el~~ar~li~er~~e~~~~r~~n~-q~~eE-n~rlRa~l~Ews 316 (358)
..++..++...++.|++-.+++..++.... .++.| ++|+...-.+|.
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 286 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQL 286 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHH
Confidence 334444555555555555555544432111 23333 455555555544
No 229
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=23.45 E-value=1.4e+03 Score=29.16 Aligned_cols=99 Identities=28% Similarity=0.357 Sum_probs=47.5
Q ss_pred hHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHH--------------HHhH-------HHHHHHH
Q 018324 222 LHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAE--------------MNQL-------QSELRLA 280 (358)
Q Consensus 222 Na~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae--------------~~q~-------~~el~~a 280 (358)
.+.|.+++-++...++.+++.. -|+++.+++-.+|+|....+ ++++ ++|+.-+
T Consensus 1430 ~~~le~k~k~f~k~l~e~k~~~------e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl 1503 (1930)
T KOG0161|consen 1430 VAALEKKQKRFEKLLAEWKKKL------EKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDL 1503 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556665555542 24455555555555433332 2222 2222222
Q ss_pred HhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhcc
Q 018324 281 RSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSN 333 (358)
Q Consensus 281 r~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~ 333 (358)
-.=+++=...++.+...++.-..|.+.|++.|+| +|.+|++|--..
T Consensus 1504 ~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeE-------lE~~le~eE~~~ 1549 (1930)
T KOG0161|consen 1504 EEQKDEGGKRVHELEKEKRRLEQEKEELQAALEE-------LEAALEAEEDKK 1549 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhHH
Confidence 3333344444555555555555555556655555 455555554333
No 230
>PRK00068 hypothetical protein; Validated
Probab=23.26 E-value=2.7e+02 Score=32.45 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--HHHhHHHhhhHHHHHHHhhcccccchhhhhHHHHHHHHHHH
Q 018324 72 PLLCSCGVILLALTGIFQQYFV--YQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIV 134 (358)
Q Consensus 72 slL~y~~v~LWlLt~l~d~yvq--~qH~KlRl~GYl~FYR~Tr~lkRlPl~IvSlGNa~LLLI~~ 134 (358)
++++-+-++++.+.+.+|+|-- ..|..+-+.||.|.+ ..+|...+-.+-++++.+++
T Consensus 216 ~~l~~~~~ll~a~~ywL~ry~Ll~s~~g~v~GA~YTDv~------a~Lpa~~iL~~ia~i~a~~~ 274 (970)
T PRK00068 216 AVLAGLLMLLKAVGYWLDRYNLLYSTRGVFTGASYTDIN------AVLPAKLILLVIAVICAIAV 274 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheecCCCEEecCChHhhh------hHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777788888743 356778899998876 45666655444444444443
No 231
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.17 E-value=4.1e+02 Score=26.05 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=6.0
Q ss_pred hhHHHHHhHHHHHHHH
Q 018324 265 TLSAEMNQLQSELRLA 280 (358)
Q Consensus 265 a~~Ae~~q~~~el~~a 280 (358)
.+--+..|+++|++.+
T Consensus 56 ~le~qv~~~e~ei~~~ 71 (239)
T COG1579 56 DLENQVSQLESEIQEI 71 (239)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 232
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=23.00 E-value=1.7e+02 Score=32.09 Aligned_cols=86 Identities=24% Similarity=0.244 Sum_probs=18.2
Q ss_pred hHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh--------hHHhhhhhchhHHhhhHHHHHhHHHHHHH
Q 018324 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV--------DLAHLLAARDQELRTLSAEMNQLQSELRL 279 (358)
Q Consensus 208 lEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qv--------dl~h~la~r~qelRa~~Ae~~q~~~el~~ 279 (358)
++.-.||+.-+.+|+..+-.+|=.|...++.|+...+.....+ +-...+..-.+++..+..+...|+.|+..
T Consensus 442 ~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~ 521 (722)
T PF05557_consen 442 IKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENER 521 (722)
T ss_dssp ----------------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888888888778888877776432222111 11221222233444455555555555555
Q ss_pred HHhhhhHhHHHHHH
Q 018324 280 ARSFVAEREAEVLR 293 (358)
Q Consensus 280 ar~li~er~~e~~~ 293 (358)
.+..++.=+.++.+
T Consensus 522 L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 522 LRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444444443
No 233
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.97 E-value=3.3e+02 Score=22.77 Aligned_cols=49 Identities=33% Similarity=0.463 Sum_probs=0.0
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHh
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILG 313 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~ 313 (358)
|+-.+..+-+++..|...+++==.+=..+.++++..-+.+ ++|||+.||
T Consensus 26 EieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W---qerLr~LLG 74 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW---QERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHH
No 234
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=22.96 E-value=8.2e+02 Score=24.96 Aligned_cols=114 Identities=24% Similarity=0.286 Sum_probs=61.5
Q ss_pred hHhhHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccC------------CCCCchhhHHhhhhhchhHHhhhHHHHHhHHH
Q 018324 208 SDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSD------------DGSTPQVDLAHLLAARDQELRTLSAEMNQLQS 275 (358)
Q Consensus 208 lEKQADLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~------------~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~ 275 (358)
+|.=..=++.|.+.|..|=.+.-.|...-..||.-+ +.+.-=.+|..-||.+-.|...--.|..+|.+
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334477888999999888888887777776552 11111123333333333333333333333333
Q ss_pred HHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHH
Q 018324 276 ELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKIST 342 (358)
Q Consensus 276 el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~ 342 (358)
+|..+..-=.||..||+-|+..|.+=...-..| .+| ..|||.||+.
T Consensus 242 --------------qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L----~aE---L~elqdkY~E 287 (306)
T PF04849_consen 242 --------------QIVDLQQRCKQLAAENEELQQHLQASKESQRQL----QAE---LQELQDKYAE 287 (306)
T ss_pred --------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHH
Confidence 333333344578888888888887644333333 333 4455555543
No 235
>PHA02246 hypothetical protein
Probab=22.93 E-value=94 Score=29.29 Aligned_cols=82 Identities=16% Similarity=0.236 Sum_probs=51.2
Q ss_pred HHHHHhhcccccchhhhhHHHHHHHHHHHHhh-cc---c--------cccHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 018324 106 SFSQKLKHIVRLPFAITAYGTAAMLLVIVWRP-HI---S--------ILSISTLLR--IIMLIEAICAASFMSVYIGYVH 171 (358)
Q Consensus 106 ~FYR~Tr~lkRlPl~IvSlGNa~LLLI~~~~~-~~---~--------~Ls~~~lLr--iil~LEli~al~~li~YIvkVr 171 (358)
.||.-.+- -...|+|+|.|--..|-+.|..- .| + .+|...++- ..-.-+.+.....+..|+-++.
T Consensus 51 SfyNlL~T-~~~~fqi~svg~nl~lgivcLlv~~~rkkd~f~~~fiiifSLllfll~~~~evtQtVat~tIiLaYi~QII 129 (192)
T PHA02246 51 SFYNLLLT-DASVFQIVSVGLNLTLGIVCLLVASYRKKDYFSIPFIIVFSLLLFLLSDFTALTQTVATITIILAYVTQIT 129 (192)
T ss_pred HHHHHHhc-CCceEEEeeeehhhhhhhhheeeehhhccccccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34443332 34478999999888877766521 11 1 122211110 0112366777777889999999
Q ss_pred HhcCCCCCCcccccccC
Q 018324 172 QYNSLNSQPDVMKSLYS 188 (358)
Q Consensus 172 rFNk~kp~PDVl~ee~s 188 (358)
+|=|.|..-|.-...|.
T Consensus 130 qfyKTK~SEg~n~~l~l 146 (192)
T PHA02246 130 TFYKTKSAEGTNRFLFL 146 (192)
T ss_pred HHhhhcccCCCChhHHH
Confidence 99999999888877654
No 236
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=22.78 E-value=1.7e+02 Score=25.71 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHH
Q 018324 282 SFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEV 328 (358)
Q Consensus 282 ~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~ 328 (358)
+|+||+++ +++|+++-+.. .....|..+..+|...||+
T Consensus 71 ALLDElE~--------~~~~i~~~~~~-~e~~~~a~~~~~l~~~Le~ 108 (139)
T PF13935_consen 71 ALLDELER--------AQQRIAELEQE-CENEDIALDVQKLRVELEA 108 (139)
T ss_pred HHHHHHHH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
No 237
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.66 E-value=1.1e+02 Score=29.05 Aligned_cols=24 Identities=42% Similarity=0.470 Sum_probs=15.2
Q ss_pred hhhhHhHHHHHHHhhhhhhHHHHH
Q 018324 300 QYVEENERLRAILGEWSTRAAKLE 323 (358)
Q Consensus 300 q~~eEn~rlRa~l~Ews~raakle 323 (358)
+..+||++|++.+.+-..+.++++
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~ 96 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELE 96 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777666555555553
No 238
>PRK03918 chromosome segregation protein; Provisional
Probab=22.62 E-value=1e+03 Score=26.07 Aligned_cols=43 Identities=26% Similarity=0.379 Sum_probs=22.5
Q ss_pred hhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhh
Q 018324 256 LAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTN 298 (358)
Q Consensus 256 la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n 298 (358)
+..-++++-.+.+++++++.++......++.-+.+++.+....
T Consensus 195 l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~ 237 (880)
T PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK 237 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555666666666666666555555544444444443
No 239
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.61 E-value=2.1e+02 Score=25.94 Aligned_cols=53 Identities=17% Similarity=0.316 Sum_probs=37.7
Q ss_pred HHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhh
Q 018324 231 RLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFV 284 (358)
Q Consensus 231 ~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li 284 (358)
+++....+|+.--.|.+++ |++.++...-++++.+..+.++++.+++.....+
T Consensus 24 kl~kl~r~Y~~lm~g~~~~-~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (151)
T PF14584_consen 24 KLRKLKRRYDALMRGKDGK-NLEDLLNELFDQIDELKEELEELEKRIEELEEKL 76 (151)
T ss_pred HHHHHHHHHHHHhCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666665666665 8999999888888888888888877776655433
No 240
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=22.31 E-value=6.1e+02 Score=25.84 Aligned_cols=41 Identities=29% Similarity=0.315 Sum_probs=28.3
Q ss_pred hhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHh
Q 018324 301 YVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTR 343 (358)
Q Consensus 301 ~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~ 343 (358)
-.+||+-|=....| +|-|+||-.|--..--|-||++..+.+
T Consensus 222 L~qENeElG~q~s~--Gria~Le~eLAmQKs~seElkssq~eL 262 (330)
T KOG2991|consen 222 LQQENEELGHQASE--GRIAELEIELAMQKSQSEELKSSQEEL 262 (330)
T ss_pred HHHHHHHHHhhhhc--ccHHHHHHHHHHHHhhHHHHHHhHHHH
Confidence 56888888777765 788999888765555555555544443
No 241
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.29 E-value=3.9e+02 Score=26.59 Aligned_cols=50 Identities=12% Similarity=0.314 Sum_probs=33.0
Q ss_pred hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhh
Q 018324 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGE 314 (358)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~E 314 (358)
.+.++-..|.+.+..-++.++.=+.-++.+..+.-.|++|-|+|.+.|.+
T Consensus 187 ~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 187 NLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 33334344444455555555555556666778888999999999888765
No 242
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.21 E-value=8.6e+02 Score=27.19 Aligned_cols=126 Identities=14% Similarity=0.193 Sum_probs=67.3
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhcc--cc
Q 018324 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHI--VR 116 (358)
Q Consensus 39 ~~g~~~y~~~L~~yA~~~~~~pw~~~~~~~~~~slL~y~~v~LWlLt~l~d~yvq~qH~KlRl~GYl~FYR~Tr~l--kR 116 (358)
.+|+-++|+..+.=.++++..-+.-..-++- |.-+-+.||++.+++-.|+-..- |+.+++. |+
T Consensus 333 ~vGsGvQ~l~M~~vti~fA~lGflSPs~RGs----LmT~~~~l~v~~G~~agY~s~rl-----------yk~~~g~~wk~ 397 (628)
T KOG1278|consen 333 LVGSGVQLLGMILVTIFFACLGFLSPSSRGS----LMTAMVLLFVFMGFVAGYVSARL-----------YKTFKGREWKR 397 (628)
T ss_pred EeccChhhhHHHHHHHHHHHhccCCcccccc----HHHHHHHHHHHHHHhhhhhhhhh-----------HhhhcCCcchh
Confidence 5777777665543322222222211111322 44566889999999998876542 2222322 23
Q ss_pred cchhhhhHHHHHHHH------HHHHhhcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 018324 117 LPFAITAYGTAAMLL------VIVWRPHI-SILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDV 182 (358)
Q Consensus 117 lPl~IvSlGNa~LLL------I~~~~~~~-~~Ls~~~lLriil~LEli~al~~li~YIvkVrrFNk~kp~PDV 182 (358)
..+..-.+=-.++++ ...|..+- +.+.-.+++ +++++=.++++|.. |++-..-|+|..+.+-|
T Consensus 398 ~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~-~ll~LwF~isVPLs--f~G~y~g~kk~~~e~Pv 467 (628)
T KOG1278|consen 398 NAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMV-ALLFLWFGISVPLS--FVGGYFGFKKPAIEHPV 467 (628)
T ss_pred hHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHH-HHHHHHHHhhhhHH--HhhHHhhccCCCCCCCc
Confidence 223222222222222 23354432 557777777 88888888888865 66666667775554333
No 243
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=22.18 E-value=1.2e+02 Score=29.47 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhcccccchhhhhHHHHHHHHHH
Q 018324 81 LLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVI 133 (358)
Q Consensus 81 LWlLt~l~d~yvq~qH~KlRl~GYl~FYR~Tr~lkRlPl~IvSlGNa~LLLI~ 133 (358)
+|.+..++.-|+---.-.-|+.||++|- +.++|+++-++-++-
T Consensus 51 iw~v~llvS~F~s~Pg~~~Rg~~F~~~~----------l~~lsl~~~~~~L~F 93 (232)
T PF10329_consen 51 IWWVLLLVSDFFSPPGFNNRGSGFLDFD----------LTLLSLITNLFNLWF 93 (232)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCchHHHH----------HHHHHHHHHHHHHHh
Confidence 3444444455554334456799999884 566676665555444
No 244
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=22.18 E-value=60 Score=23.55 Aligned_cols=27 Identities=19% Similarity=0.021 Sum_probs=17.3
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhc
Q 018324 38 SIFGSVVYCFVLAGYAILAAGTTWIFH 64 (358)
Q Consensus 38 ~~~g~~~y~~~L~~yA~~~~~~pw~~~ 64 (358)
+--.+++=+++++.+.++|+.+||+.-
T Consensus 14 ~nk~a~~gl~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 14 RNKLAVIGLIILLILVLLAIFAPFISP 40 (56)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333444445567777788888898644
No 245
>PRK03918 chromosome segregation protein; Provisional
Probab=22.17 E-value=1.1e+03 Score=26.00 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=13.3
Q ss_pred hhHHHHHhHHHHHHHHHhhhhHhHHHHHHH
Q 018324 265 TLSAEMNQLQSELRLARSFVAEREAEVLRV 294 (358)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~ 294 (358)
.+.++++.++.++...+.-|++-+.++..+
T Consensus 623 ~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l 652 (880)
T PRK03918 623 KLEEELDKAFEELAETEKRLEELRKELEEL 652 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444
No 246
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=22.05 E-value=6.1e+02 Score=23.14 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=52.7
Q ss_pred hhhhhhhccCcccCCcCcccchhhHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018324 19 AMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQK 98 (358)
Q Consensus 19 ~~f~d~~~e~p~~~~r~~~~~~g~~~y~~~L~~yA~~~~~~pw~~~~~~~~~~slL~y~~v~LWlLt~l~d~yvq~qH~K 98 (358)
-.+-|+=.|.|-...|--+-...+|+...+...|=+++..+.|+-.. + ...+ +=+++|++.+.--.|+-.
T Consensus 17 ~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~~--~-~~~~---~lai~y~~~~~P~sf~~w---- 86 (177)
T PF04144_consen 17 CFYHDISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAGG--S-GSDF---GLAILYLLLGTPASFFCW---- 86 (177)
T ss_pred eEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--C-ccee---hHHHHHHHHHhHHHHHHH----
Confidence 34568888999866555566677777766777777777766664441 1 2222 335667666665555432
Q ss_pred HHhhhHHHHHHHhhcccccchhh
Q 018324 99 IRLQGYYSFSQKLKHIVRLPFAI 121 (358)
Q Consensus 99 lRl~GYl~FYR~Tr~lkRlPl~I 121 (358)
|--.|+..|.=+..-+.+
T Consensus 87 -----yrplY~A~r~dss~~f~~ 104 (177)
T PF04144_consen 87 -----YRPLYKAFRTDSSFRFMW 104 (177)
T ss_pred -----HHHHHHHHhcccchHHHH
Confidence 445566666555444444
No 247
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.00 E-value=1.4e+03 Score=27.28 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=8.8
Q ss_pred HHhhhhHhHHHHHHHHhh
Q 018324 280 ARSFVAEREAEVLRVRNT 297 (358)
Q Consensus 280 ar~li~er~~e~~~~r~~ 297 (358)
.+.-++.-|.+++.++..
T Consensus 213 ~~~~~~~l~~~~~~Lq~~ 230 (1109)
T PRK10929 213 AKKRSQQLDAYLQALRNQ 230 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555555543
No 248
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.88 E-value=3.1e+02 Score=26.51 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=43.0
Q ss_pred HhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhh-hhhhhHhHHHH
Q 018324 253 AHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTN-NQYVEENERLR 309 (358)
Q Consensus 253 ~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n-~q~~eEn~rlR 309 (358)
+-.+.++.|.+=.+.-.++++|.|++.=|+.|.+-.-+++++..-. +-|.+=.+|++
T Consensus 46 e~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 46 ERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566666667788889999999999999999999999876544 34666666665
No 249
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.74 E-value=2.9e+02 Score=25.92 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=39.1
Q ss_pred hhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHH
Q 018324 255 LLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLR 309 (358)
Q Consensus 255 ~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlR 309 (358)
.+...|.++..+...+-+++.+.......-.+.|+||.++.+-.++..++-+..+
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666777777777777777777777888888888877777766655443
No 250
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=21.72 E-value=7.2e+02 Score=23.86 Aligned_cols=39 Identities=28% Similarity=0.288 Sum_probs=33.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 018324 309 RAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQH 347 (358)
Q Consensus 309 Ra~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~~~ 347 (358)
-+++.|-..+..-|...++.=|.-+-|||-+++.+=.|.
T Consensus 150 da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 150 DAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888889999999999999999999999999886653
No 251
>PF13514 AAA_27: AAA domain
Probab=21.64 E-value=1.3e+03 Score=26.78 Aligned_cols=71 Identities=28% Similarity=0.361 Sum_probs=45.2
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHh------hhhhhhhHhHHHHHHHhhhhhhH---HHHHHHHHHhhhc
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRN------TNNQYVEENERLRAILGEWSTRA---AKLERALEVERMS 332 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~------~n~q~~eEn~rlRa~l~Ews~ra---akle~ale~er~~ 332 (358)
++..+..+++.+..++......+++-..++..+.. ...++.+...+++....+|.... .-|+.+++.-|-.
T Consensus 897 ~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~ 976 (1111)
T PF13514_consen 897 ELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYREE 976 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777777777653 23455666677777778886543 4456665554433
No 252
>PRK05349 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=21.49 E-value=3.5e+02 Score=28.55 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=40.6
Q ss_pred HHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018324 51 GYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQ 102 (358)
Q Consensus 51 ~yA~~~~~~pw~~~~~~~~~~slL~y~~v~LWlLt~l~d~yvq~qH~KlRl~ 102 (358)
.|++.|-+..+++...-..+|.=.+|+-.+.=+++=++|+|++.++.|.|.+
T Consensus 350 IyGi~iG~lt~iIR~~g~~yPEGV~fAILlmN~~~PlID~~~v~~~~~~r~~ 401 (405)
T PRK05349 350 IYGALIGFMTVLIRVVNPAYPEGMMLAILFANLFAPLFDYFVVQANIKRRLA 401 (405)
T ss_pred HHHHHHHHHHhhHhhcCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 7888888888877754436777677777777788999999999988877765
No 253
>PLN02776 prenyltransferase
Probab=21.46 E-value=6.7e+02 Score=25.66 Aligned_cols=25 Identities=0% Similarity=0.187 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 018324 71 PPLLCSCGVILLALTGIFQQYFVYQ 95 (358)
Q Consensus 71 ~slL~y~~v~LWlLt~l~d~yvq~q 95 (358)
++++.++=+.+|.....++--++++
T Consensus 152 ~~~~Lf~~~~~Wq~pHf~~la~~~~ 176 (341)
T PLN02776 152 GAMVLAAALYFWQMPHFMALAYMCR 176 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4567777778888766665555554
No 254
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=21.35 E-value=3.3e+02 Score=29.24 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=41.9
Q ss_pred HHHhHHhhHHHHHHHHHhhhhcccCCCCC--------chhhHHhhhhhchhHHhhhHHHHHhHHHHHHHH
Q 018324 219 RENLHFLSEEILRLQECLSKYEQSDDGST--------PQVDLAHLLAARDQELRTLSAEMNQLQSELRLA 280 (358)
Q Consensus 219 kdHNa~LSkrIL~Lq~~l~kye~~~~g~t--------~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~a 280 (358)
-.||..|+-|+-.=-.+|.-+-+++.|.| +--.|.-||.-.+-|+--|..|+.-+..||..|
T Consensus 469 naHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQta 538 (593)
T KOG4807|consen 469 NAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTA 538 (593)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34666655544444444444444543333 233678899999999999999999999999886
No 255
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=21.27 E-value=3.6e+02 Score=20.22 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=28.0
Q ss_pred HHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhH
Q 018324 279 LARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRA 319 (358)
Q Consensus 279 ~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~ra 319 (358)
+||.| +=-+.+|..+...|.. -.++-+.+|..|..|.
T Consensus 16 la~~L-gl~~~~I~~i~~~~~~---~~~~~~~mL~~W~~~~ 52 (79)
T cd01670 16 LARKL-GLSDGEIDQIEEDNPR---VREQAYQLLLKWEERE 52 (79)
T ss_pred HHHHh-CCCHHHHHHHHHhCCC---HHHHHHHHHHHHHhcc
Confidence 44444 2236789999888877 5688999999999888
No 256
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=21.19 E-value=2.9e+02 Score=27.02 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=32.0
Q ss_pred hhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 018324 313 GEWSTRAAKLERALEVERMSNIELQKKISTRRNQH 347 (358)
Q Consensus 313 ~Ews~raakle~ale~er~~~~~~~~~~~~~r~~~ 347 (358)
+|=..|++-||+-.++.|.-..+|++++.++|+-.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999855
No 257
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.19 E-value=1e+03 Score=25.38 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=38.0
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHH
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKIS 341 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~ 341 (358)
+.+.....+.+.+.+|..-+.-|+.-..++...+. +..++.++|-..+.|-..=-++|+..++.++-+.-||+.|=+
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~---eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~ 234 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLS---EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANES 234 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33334444444445555545444444443333322 334444455555555544445555555555555555555444
Q ss_pred Hhhh
Q 018324 342 TRRN 345 (358)
Q Consensus 342 ~~r~ 345 (358)
.+++
T Consensus 235 ~L~~ 238 (420)
T COG4942 235 RLKN 238 (420)
T ss_pred HHHH
Confidence 4443
No 258
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.04 E-value=7.9e+02 Score=29.71 Aligned_cols=72 Identities=22% Similarity=0.211 Sum_probs=57.1
Q ss_pred CCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhh
Q 018324 244 DGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEW 315 (358)
Q Consensus 244 ~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ew 315 (358)
.+.|--.|+..-|..+.+|++..+.++.+++.|.+.-++.+....-++...+..++.--..|+=|-|++.+.
T Consensus 539 e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~k 610 (1293)
T KOG0996|consen 539 EKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLK 610 (1293)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 334455577788888899999999999999999998888888888888888887777777787777777543
No 259
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.01 E-value=4.2e+02 Score=22.77 Aligned_cols=58 Identities=14% Similarity=0.029 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhhhhhhccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 018324 45 YCFVLAGYAILAAGTTWIFHPI--HYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQ 102 (358)
Q Consensus 45 y~~~L~~yA~~~~~~pw~~~~~--~~~~~slL~y~~v~LWlLt~l~d~yvq~qH~KlRl~ 102 (358)
+++++++|.++-...|.-...+ |-...-+.+|+-+++-.-..++-+=-+..+.+.|..
T Consensus 10 ~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~IlmsQNRq~~~dr~ra~ 69 (108)
T PF06210_consen 10 FTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPLILMSQNRQAARDRLRAE 69 (108)
T ss_pred HHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 4456667776666555532222 333345677888888888888877777766665554
No 260
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=20.95 E-value=2e+02 Score=25.14 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 018324 72 PLLCSCGVILLALTGIFQQYFVYQ 95 (358)
Q Consensus 72 slL~y~~v~LWlLt~l~d~yvq~q 95 (358)
|++.++-+-++++.+.|..+.++.
T Consensus 37 ~Vl~F~glev~~l~~a~~~~~r~~ 60 (140)
T PF10003_consen 37 PVLPFAGLEVLALWYAFRRNYRHA 60 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 556666667777777777776653
No 261
>PF10824 DUF2580: Protein of unknown function (DUF2580); InterPro: IPR022536 This entry represents the ESX-1 secretion-associated protein EspC protein family.
Probab=20.94 E-value=3.9e+02 Score=20.46 Aligned_cols=67 Identities=24% Similarity=0.234 Sum_probs=45.0
Q ss_pred hhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHH-----HHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHH
Q 018324 260 DQELRTLSAEMNQLQSELRLARSFVAEREAEVLR-----VRNTNNQYVEENERLRAILGEWSTRAAKLERAL 326 (358)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~-----~r~~n~q~~eEn~rlRa~l~Ews~raakle~al 326 (358)
+.+||.+++.++.+-+++..+..-.......... --.....+.+-.++++..++.|+.+...+=..|
T Consensus 9 p~~Lr~~A~~~~~~A~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~L 80 (100)
T PF10824_consen 9 PEALRQAAAQLDDIADQLAAAASAVAGASAAVAAAFGPIGAAFAAALAEALEARQAALEQLAEALDEFADAL 80 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999887777333222221 133455667777777777777777766654444
No 262
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=20.90 E-value=1e+03 Score=25.33 Aligned_cols=92 Identities=17% Similarity=0.134 Sum_probs=45.1
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHH
Q 018324 213 ALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVL 292 (358)
Q Consensus 213 DLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~ 292 (358)
..++=|.-+...-+..+..|+.++..|.-+.-.. .+ ...+.-..+...+..+..||.-++..|..-..|+.
T Consensus 235 ~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~---~~------~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~ 305 (522)
T PF05701_consen 235 EAAKDLESKLAEASAELESLQAELEAAKESKLEE---EA------EAKEKSSELQSSLASAKKELEEAKKELEKAKEEAS 305 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hH------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444556666666666555421000 00 11112223444455566666666666666666666
Q ss_pred HHHhhhhhhhhHhHHHHHHHh
Q 018324 293 RVRNTNNQYVEENERLRAILG 313 (358)
Q Consensus 293 ~~r~~n~q~~eEn~rlRa~l~ 313 (358)
.++....---.|-++.+..+.
T Consensus 306 ~L~~~vesL~~ELe~~K~el~ 326 (522)
T PF05701_consen 306 SLRASVESLRSELEKEKEELE 326 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666665554444444444443
No 263
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=20.78 E-value=1.2e+02 Score=25.65 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=23.4
Q ss_pred HhHHHHHHHHhhhhhhhhHhHHHHHHHh
Q 018324 286 EREAEVLRVRNTNNQYVEENERLRAILG 313 (358)
Q Consensus 286 er~~e~~~~r~~n~q~~eEn~rlRa~l~ 313 (358)
.=+..+..+..-|+...+||++|++-|+
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888899999999999999988664
No 264
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.71 E-value=4.7e+02 Score=21.32 Aligned_cols=56 Identities=29% Similarity=0.378 Sum_probs=30.8
Q ss_pred hhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHH
Q 018324 260 DQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERAL 326 (358)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~al 326 (358)
+++.|.+-.+++.+++|-...-..|+.... .. ++.+.|.+-..+.+.....+|..+
T Consensus 35 d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~-------~~----~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 35 DQERRELQQELEELRAERNELSKEIGKLKK-------AG----EDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-------TT----CCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhh-------Cc----ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777776666655555544322 11 445555555555555555555443
No 265
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.65 E-value=2.8e+02 Score=23.48 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=26.5
Q ss_pred HhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHH
Q 018324 286 EREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLE 323 (358)
Q Consensus 286 er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle 323 (358)
+-.+++..++..|.+-..||++|++-+..|..-.+-+|
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE 68 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 44566677777777778888888888888876433343
No 266
>PRK09098 type III secretion system protein HrpB; Validated
Probab=20.65 E-value=7.6e+02 Score=23.68 Aligned_cols=62 Identities=26% Similarity=0.328 Sum_probs=38.4
Q ss_pred hhHHHHHhHHHHHH-HHHhhhhHhHHHHHHHHhhhhhhhhH------hHHHHHHHhhhhhhHHHHHHHH
Q 018324 265 TLSAEMNQLQSELR-LARSFVAEREAEVLRVRNTNNQYVEE------NERLRAILGEWSTRAAKLERAL 326 (358)
Q Consensus 265 a~~Ae~~q~~~el~-~ar~li~er~~e~~~~r~~n~q~~eE------n~rlRa~l~Ews~raakle~al 326 (358)
.+++|.+.+-.+.+ .|..+|++=.++...++..=++--|+ ++.++..+.||..+.+....+.
T Consensus 36 ~~~~~~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~~~~~~~ 104 (233)
T PRK09098 36 AVHAERDAVLAAARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEWHARGADHAFAE 104 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556655555554 35666666666666665544331111 5678889999998888765543
No 267
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=20.49 E-value=62 Score=33.87 Aligned_cols=27 Identities=37% Similarity=0.383 Sum_probs=19.5
Q ss_pred HhhhhcccCCCCCchhhHHhhhhhchh
Q 018324 235 CLSKYEQSDDGSTPQVDLAHLLAARDQ 261 (358)
Q Consensus 235 ~l~kye~~~~g~t~qvdl~h~la~r~q 261 (358)
.++.-.|+-+....+.|||||||||.-
T Consensus 248 ~~~~~~rei~~~K~~~dvahLLaArsd 274 (465)
T KOG3973|consen 248 ILSARVREIGRVKANSDVAHLLAARSD 274 (465)
T ss_pred HHHHHHHHhccccchhHHHHHHHhhhh
Confidence 444445555555678899999999965
No 268
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=20.37 E-value=7.5e+02 Score=23.54 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=26.6
Q ss_pred HHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHH
Q 018324 294 VRNTNNQYVEENERLRAILGEWSTRAAKLERAL 326 (358)
Q Consensus 294 ~r~~n~q~~eEn~rlRa~l~Ews~raakle~al 326 (358)
--...++|.+.++-|+....+.+.|.+.++..+
T Consensus 176 ~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~ 208 (247)
T PF14661_consen 176 KDAARQKYQEFAQLLRKKYRELSAECAELQAQL 208 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333456688888899999999999999998888
No 269
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.18 E-value=1e+03 Score=28.94 Aligned_cols=133 Identities=15% Similarity=0.171 Sum_probs=86.4
Q ss_pred ccCcccCCcCcccchhhHHHHHHHHHHHHHHHhhhhhhccccccchhHHHHHHH--HHHHHHHHHHHHHHH-HHhHHHhh
Q 018324 26 HEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGV--ILLALTGIFQQYFVY-QVQKIRLQ 102 (358)
Q Consensus 26 ~e~p~~~~r~~~~~~g~~~y~~~L~~yA~~~~~~pw~~~~~~~~~~slL~y~~v--~LWlLt~l~d~yvq~-qH~KlRl~ 102 (358)
.+.|-+|-|-+-++-..++.||+++---+=+++.-|.|----. |.-+-++ .+.+++.++|-.+-- +-.-.|..
T Consensus 1147 ~i~~~s~EriFltlsnyIFtaIfV~Em~lKVVALGl~fge~aY----l~ssWN~LDgflv~vsviDilvs~asa~g~kIL 1222 (1956)
T KOG2302|consen 1147 AIVEGSTERIFLTLSNYIFTAIFVVEMTLKVVALGLYFGEQAY----LRSSWNVLDGFLVAVSVIDILVSQASAGGAKIL 1222 (1956)
T ss_pred ccccCcceEEEEEecchHHHHHHHHHHHHHHHhhhhccchHHH----HHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3567788888888888999999999888888888876643211 2222222 244555556654433 33456778
Q ss_pred hHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018324 103 GYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILS-ISTLLRIIMLIEAICAASFMSVYIGYVHQYN 174 (358)
Q Consensus 103 GYl~FYR~Tr~lkRlPl~IvSlGNa~LLLI~~~~~~~~~Ls-~~~lLriil~LEli~al~~li~YIvkVrrFN 174 (358)
|-++-.|-+|-++ |+.++|--+.+=|++-++..+ |. +-+++ ++|.+.++++=|+-|.-|-
T Consensus 1223 gVlrvLRlLRtlR--pLRviSra~glklVveTL~sS---LkpIgnIv-------liccaffiiFgilgvqLFk 1283 (1956)
T KOG2302|consen 1223 GVLRVLRLLRTLR--PLRVISRAPGLKLVVETLISS---LKPIGNIV-------LICCAFFIIFGILGVQLFK 1283 (1956)
T ss_pred HHHHHHHHHHHhh--HHHHHhhcccHHHHHHHHHhc---cccHHHHH-------HHHHHHHHHHHHHHHHHhc
Confidence 8888777777766 788899988888888877753 32 33333 3455566666666666664
Done!