Query 018324
Match_columns 358
No_of_seqs 73 out of 75
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:28:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 90.1 1.7 5.9E-05 42.9 10.6 92 256-347 458-574 (597)
2 3oja_B Anopheles plasmodium-re 86.0 6.4 0.00022 38.8 11.7 78 268-345 502-579 (597)
3 1c1g_A Tropomyosin; contractIl 85.6 15 0.00051 30.8 14.9 56 263-318 57-112 (284)
4 2dfs_A Myosin-5A; myosin-V, in 79.4 6.8 0.00023 43.3 9.7 23 217-239 918-940 (1080)
5 3kdq_A Uncharacterized conserv 74.8 12 0.00041 32.7 8.2 55 223-281 14-68 (154)
6 2v71_A Nuclear distribution pr 72.2 57 0.0019 29.5 14.4 125 213-341 10-140 (189)
7 3thf_A Protein shroom; coiled- 68.6 49 0.0017 30.2 10.9 76 253-328 18-98 (190)
8 1i84_S Smooth muscle myosin he 66.2 17 0.00057 40.2 8.8 27 38-64 656-682 (1184)
9 1m1j_A Fibrinogen alpha subuni 66.0 62 0.0021 33.3 12.2 114 220-344 58-190 (491)
10 3vkg_A Dynein heavy chain, cyt 64.2 95 0.0033 38.6 15.2 71 261-331 2014-2087(3245)
11 3vp9_A General transcriptional 60.1 19 0.00064 29.4 5.9 64 251-314 11-86 (92)
12 2dfs_A Myosin-5A; myosin-V, in 57.6 1.1E+02 0.0038 33.8 13.3 60 263-322 986-1049(1080)
13 2jee_A YIIU; FTSZ, septum, coi 55.2 37 0.0013 27.1 6.8 47 264-313 30-76 (81)
14 3i00_A HIP-I, huntingtin-inter 54.5 27 0.00091 29.4 6.2 29 287-315 52-80 (120)
15 3nmd_A CGMP dependent protein 54.5 20 0.00069 28.1 5.0 44 251-301 23-66 (72)
16 1i84_S Smooth muscle myosin he 53.9 44 0.0015 36.8 9.5 11 104-114 726-736 (1184)
17 3s9g_A Protein hexim1; cyclin 53.5 25 0.00085 29.3 5.7 48 300-347 48-95 (104)
18 1deq_A Fibrinogen (alpha chain 52.7 1E+02 0.0034 31.0 10.8 118 220-347 60-195 (390)
19 3ghg_A Fibrinogen alpha chain; 50.0 52 0.0018 34.3 8.6 114 218-343 55-188 (562)
20 2fxo_A Myosin heavy chain, car 49.6 1.1E+02 0.0038 25.3 10.9 61 262-322 42-102 (129)
21 2q6q_A Spindle POLE BODY compo 48.6 29 0.00099 27.3 5.0 55 284-345 12-66 (74)
22 3a2a_A Voltage-gated hydrogen 47.5 16 0.00055 27.6 3.3 27 289-315 25-51 (58)
23 3hnw_A Uncharacterized protein 47.0 80 0.0027 26.9 8.1 100 217-328 29-135 (138)
24 2ocy_A RAB guanine nucleotide 42.9 1.7E+02 0.0059 25.6 10.9 58 265-322 76-134 (154)
25 3na7_A HP0958; flagellar bioge 42.6 1.4E+02 0.0047 27.1 9.5 6 229-234 10-15 (256)
26 2jee_A YIIU; FTSZ, septum, coi 40.7 1.1E+02 0.0036 24.4 7.3 24 299-322 51-74 (81)
27 3hnw_A Uncharacterized protein 39.9 1.7E+02 0.0059 24.8 10.3 93 251-344 32-130 (138)
28 1pzq_A Erythronolide synthase; 39.5 24 0.00081 26.3 3.1 47 245-320 3-49 (60)
29 4dk0_A Putative MACA; alpha-ha 39.4 88 0.003 28.7 7.8 36 263-298 72-107 (369)
30 1t6f_A Geminin; coiled-coil, c 38.8 32 0.0011 23.9 3.5 28 268-302 7-34 (37)
31 2ksd_A Aerobic respiration con 38.3 6.7 0.00023 33.2 0.0 7 37-43 23-29 (115)
32 3i00_A HIP-I, huntingtin-inter 37.9 1E+02 0.0035 25.8 7.2 40 257-299 11-50 (120)
33 3hhm_B NISH2 P85alpha; PI3KCA, 37.0 2.5E+02 0.0087 27.3 10.9 39 305-343 207-245 (373)
34 4fm3_A Uncharacterized hypothe 36.1 95 0.0032 25.5 6.5 67 269-349 30-96 (98)
35 2e7s_A RAB guanine nucleotide 35.2 86 0.0029 27.1 6.5 47 248-295 2-52 (135)
36 4i0x_A ESAT-6-like protein MAB 34.2 1.5E+02 0.0052 22.5 7.9 64 260-328 2-65 (94)
37 3fpp_A Macrolide-specific effl 30.8 2.2E+02 0.0076 25.7 8.9 34 264-297 72-105 (341)
38 1v54_K IHQ, cytochrome C oxida 30.7 25 0.00084 26.5 2.0 33 39-71 18-50 (56)
39 1zxa_A CGMP-dependent protein 30.0 62 0.0021 24.9 4.2 11 285-295 35-45 (67)
40 3nmd_A CGMP dependent protein 29.9 1.3E+02 0.0046 23.4 6.2 42 273-314 24-65 (72)
41 2c9l_Y EB1, zebra, BZLF1 trans 29.4 85 0.0029 23.7 4.7 25 289-313 22-46 (63)
42 1zxa_A CGMP-dependent protein 29.3 48 0.0016 25.6 3.5 31 283-313 19-49 (67)
43 2gf5_A FADD protein; death dom 28.5 90 0.0031 27.2 5.6 50 279-331 115-170 (191)
44 3iv1_A Tumor susceptibility ge 28.4 2.2E+02 0.0075 22.5 7.4 36 289-324 25-60 (78)
45 4hkr_A Calcium release-activat 28.3 1.4E+02 0.0047 27.8 6.9 19 157-175 152-170 (214)
46 3ajw_A Flagellar FLIJ protein; 27.8 2.4E+02 0.0081 22.6 12.2 96 224-319 37-144 (150)
47 4hg6_A Cellulose synthase subu 27.6 3E+02 0.01 28.8 10.3 27 150-176 103-129 (802)
48 2eqb_B RAB guanine nucleotide 27.3 2.5E+02 0.0087 23.0 7.7 19 329-347 74-92 (97)
49 3a7p_A Autophagy protein 16; c 27.2 3.2E+02 0.011 24.0 9.4 39 257-295 64-102 (152)
50 2xdj_A Uncharacterized protein 27.2 53 0.0018 26.0 3.5 30 316-345 5-34 (83)
51 2o71_A Death domain-containing 27.1 1.7E+02 0.0059 23.8 6.8 57 279-338 41-103 (115)
52 2of5_H Leucine-rich repeat and 27.0 78 0.0027 25.7 4.7 50 279-331 30-86 (118)
53 3lay_A Zinc resistance-associa 26.3 2.3E+02 0.0078 25.0 7.8 66 206-284 67-136 (175)
54 2j5u_A MREC protein; bacterial 26.2 45 0.0016 30.6 3.4 12 302-313 49-60 (255)
55 3m91_A Proteasome-associated A 25.7 1.5E+02 0.005 21.6 5.4 37 307-343 13-49 (51)
56 3m9b_A Proteasome-associated A 24.9 77 0.0026 29.9 4.7 41 305-345 56-96 (251)
57 2ykt_A Brain-specific angiogen 24.4 3.8E+02 0.013 24.6 9.4 64 265-330 118-194 (253)
58 1wxp_A THO complex subunit 1; 24.0 1.5E+02 0.0051 23.6 5.7 60 268-330 19-88 (110)
59 3vmx_A Voltage-gated hydrogen 23.6 61 0.0021 23.7 3.0 24 291-314 20-43 (48)
60 2v4h_A NF-kappa-B essential mo 23.1 3.3E+02 0.011 22.8 8.7 32 269-300 25-56 (110)
61 3zwl_E Eukaryotic translation 22.6 70 0.0024 23.3 3.1 25 306-330 15-39 (50)
62 2y69_K Cytochrome C oxidase po 22.5 40 0.0014 26.9 2.0 33 39-71 42-74 (80)
63 3ra3_B P2F; coiled coil domain 21.7 75 0.0026 20.5 2.7 23 215-237 2-24 (28)
64 2yqf_A Ankyrin-1; death domain 21.6 1.4E+02 0.0049 23.7 5.2 52 278-332 34-91 (111)
65 2of5_A Death domain-containing 21.0 1.7E+02 0.0057 23.9 5.6 52 279-333 41-98 (114)
66 3he5_A Synzip1; heterodimeric 21.0 67 0.0023 23.0 2.7 19 211-229 29-47 (49)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.11 E-value=1.7 Score=42.88 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=54.3
Q ss_pred hhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHH------------------HHHHHHhhhhhhhhHhHHHHHHHhhh--
Q 018324 256 LAARDQELRTLSAEMNQLQSELRLARSFVAEREA------------------EVLRVRNTNNQYVEENERLRAILGEW-- 315 (358)
Q Consensus 256 la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~------------------e~~~~r~~n~q~~eEn~rlRa~l~Ew-- 315 (358)
+...+.+++.+.+|.++.+..+...+..|+++.. +++.++..+.....+++++....++-
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQK 537 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhc
Confidence 3335567777777777777777777777766532 23344444444555555555444222
Q ss_pred -----hhhHHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 018324 316 -----STRAAKLERALEVERMSNIELQKKISTRRNQH 347 (358)
Q Consensus 316 -----s~raakle~ale~er~~~~~~~~~~~~~r~~~ 347 (358)
.....++|+.+|..+-.-.|++++.+..+.+.
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 23444666666666666666766666666543
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.97 E-value=6.4 Score=38.80 Aligned_cols=78 Identities=12% Similarity=0.004 Sum_probs=51.7
Q ss_pred HHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 268 AEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 268 Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
..++++..+.+..+...+.+.++.++.+..-++..++-+.++...+++..+..+-...++.-+-.+..+.+++.++=.
T Consensus 502 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 502 RSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666677777777777777777766666777666777777776666666666655555566666665544
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=85.64 E-value=15 Score=30.80 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=23.5
Q ss_pred HhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhh
Q 018324 263 LRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTR 318 (358)
Q Consensus 263 lRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~r 318 (358)
+..+..+++.++.++..+..-+..-+.++..+..--.....+.+++..-+.+...+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (284)
T 1c1g_A 57 LDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQK 112 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333334444444433333333
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.35 E-value=6.8 Score=43.26 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhh
Q 018324 217 YQRENLHFLSEEILRLQECLSKY 239 (358)
Q Consensus 217 YLkdHNa~LSkrIL~Lq~~l~ky 239 (358)
-+++.|..|-.+|-.||.++..-
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~ 940 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQ 940 (1080)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777777766443
No 5
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=74.84 E-value=12 Score=32.73 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=43.3
Q ss_pred HHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHH
Q 018324 223 HFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLAR 281 (358)
Q Consensus 223 a~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar 281 (358)
+-|.+||-.|..++.+.=+-++|.+|.-|...+++ |+..+..+++.|-..+..+-
T Consensus 14 adl~kri~qL~~ri~~n~~vQEGe~P~edp~~Ll~----El~~~~~~L~~Li~~IN~TN 68 (154)
T 3kdq_A 14 VEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILT----ELEELTTRINDLVRRINRTN 68 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTEEETTCCCSSCHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCeecCCCCCCCCHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 45889999999999888888999999999999987 66666666666555555544
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=72.16 E-value=57 Score=29.52 Aligned_cols=125 Identities=18% Similarity=0.235 Sum_probs=62.8
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh--hHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHH
Q 018324 213 ALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQV--DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAE 290 (358)
Q Consensus 213 DLIrYLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qv--dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e 290 (358)
|-|.|-|.--...-.++..|+..+..|..+. -+. -|..=|.+-+.-.|.+....+++..|+...|.=...=.++
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFqesS----rELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQEGS----RELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999988889999999999999997761 111 1222222223333344444444444433333222222222
Q ss_pred ----HHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHH
Q 018324 291 ----VLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKIS 341 (358)
Q Consensus 291 ----~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~ 341 (358)
+..+.....+--++++.|+.-+.+=...+--|||+--.-..|.-++..++.
T Consensus 86 ~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln 140 (189)
T 2v71_A 86 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN 140 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 222222222333444445555555555555555554444444444444443
No 7
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=68.62 E-value=49 Score=30.19 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=62.6
Q ss_pred HhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhh-----hhhhHhHHHHHHHhhhhhhHHHHHHHHH
Q 018324 253 AHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNN-----QYVEENERLRAILGEWSTRAAKLERALE 327 (358)
Q Consensus 253 ~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~-----q~~eEn~rlRa~l~Ews~raakle~ale 327 (358)
+.|..+=.+-|..|.+|.+.++.|.+.-.++=++=++-++++=.-|. .||.+-++.=--|=-+|+|-|+.|++|.
T Consensus 18 ~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL~ 97 (190)
T 3thf_A 18 DELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSLE 97 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 33444445567799999999999999999998888888887755553 3899999999999999999999999997
Q ss_pred H
Q 018324 328 V 328 (358)
Q Consensus 328 ~ 328 (358)
.
T Consensus 98 ~ 98 (190)
T 3thf_A 98 T 98 (190)
T ss_dssp H
T ss_pred c
Confidence 5
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=66.18 E-value=17 Score=40.16 Aligned_cols=27 Identities=7% Similarity=-0.055 Sum_probs=14.6
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhc
Q 018324 38 SIFGSVVYCFVLAGYAILAAGTTWIFH 64 (358)
Q Consensus 38 ~~~g~~~y~~~L~~yA~~~~~~pw~~~ 64 (358)
+++|+-+=-=|-.--..+--+.||...
T Consensus 656 ~tv~~~f~~~l~~L~~~l~~t~phfvR 682 (1184)
T 1i84_S 656 RTVGQLYKEQLTKLMTTLRNTNPNFVR 682 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSEEEECC
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 567766544343344455566676443
No 9
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=66.02 E-value=62 Score=33.26 Aligned_cols=114 Identities=15% Similarity=0.219 Sum_probs=82.1
Q ss_pred HHhHHhhHHHHHHHHHhhhhcccCCCCCchh--hHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhh
Q 018324 220 ENLHFLSEEILRLQECLSKYEQSDDGSTPQV--DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNT 297 (358)
Q Consensus 220 dHNa~LSkrIL~Lq~~l~kye~~~~g~t~qv--dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~ 297 (358)
+++....++|=.|...|..|.++- -++-++ .+-.++.-|-........-.||+.+||+.=-.-|.++ +
T Consensus 58 kqerdv~~rI~kLkn~L~~~s~s~-~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~k---------V 127 (491)
T 1m1j_A 58 DTDQNYSQRIDNIRQQLADSQNKY-KTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQR---------V 127 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H
T ss_pred HhhhhHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH---------H
Confidence 456777889999999999998883 223332 5577777777777788888899999998766666655 2
Q ss_pred hhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHh-----------------hhccHHHHHHHHHhh
Q 018324 298 NNQYVEENERLRAILGEWSTRAAKLERALEVE-----------------RMSNIELQKKISTRR 344 (358)
Q Consensus 298 n~q~~eEn~rlRa~l~Ews~raakle~ale~e-----------------r~~~~~~~~~~~~~r 344 (358)
|+|- .--.=||..|+.=-.-..|||.+.-.. .=++.++||++.++=
T Consensus 128 d~qi-~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~VD~~~Ye~~QKqLeQv~ 190 (491)
T 1m1j_A 128 ATQV-NRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKEGYDNIQKHLTQAS 190 (491)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCCCTTTTHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHhhhcHHHHHHHHHHHHHhh
Confidence 3333 222336777877778888999887543 457889999999883
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=64.17 E-value=95 Score=38.57 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=56.4
Q ss_pred hHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhh---hhHHHHHHHHHHhhh
Q 018324 261 QELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWS---TRAAKLERALEVERM 331 (358)
Q Consensus 261 qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews---~raakle~ale~er~ 331 (358)
++|..+.++++..+.+|+.+++.|++-+..++.+...=++.+.|.++|.+.++.=+ .||.||=..|..|+.
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 46778888888888888888999999998888888877788889999988776543 466677666777765
No 11
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=60.13 E-value=19 Score=29.43 Aligned_cols=64 Identities=28% Similarity=0.296 Sum_probs=37.9
Q ss_pred hHHhhhhhchhHHhhhHHHHHhHHHHHH-HHHhhhhHhHHHHHHHHh-----------hhhhhhhHhHHHHHHHhh
Q 018324 251 DLAHLLAARDQELRTLSAEMNQLQSELR-LARSFVAEREAEVLRVRN-----------TNNQYVEENERLRAILGE 314 (358)
Q Consensus 251 dl~h~la~r~qelRa~~Ae~~q~~~el~-~ar~li~er~~e~~~~r~-----------~n~q~~eEn~rlRa~l~E 314 (358)
-|..+|++=.+|.-+++.|.+..+..-. ---.=|.---+|++.||. +.++|.||-.|||+-|+.
T Consensus 11 Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 11 KLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp ------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777766655442221 111224444567777775 478899999999999875
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=57.63 E-value=1.1e+02 Score=33.83 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=28.1
Q ss_pred HhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHh----hhhhhhhHhHHHHHHHhhhhhhHHHH
Q 018324 263 LRTLSAEMNQLQSELRLARSFVAEREAEVLRVRN----TNNQYVEENERLRAILGEWSTRAAKL 322 (358)
Q Consensus 263 lRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~----~n~q~~eEn~rlRa~l~Ews~raakl 322 (358)
+..+..|++.+..++..+.....+.+.+++++.. .-+.-.+||+.||..+++=....++.
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433332 11223456777777666655444444
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=55.20 E-value=37 Score=27.08 Aligned_cols=47 Identities=30% Similarity=0.320 Sum_probs=23.6
Q ss_pred hhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHh
Q 018324 264 RTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILG 313 (358)
Q Consensus 264 Ra~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~ 313 (358)
-.|..+-+.+..|...+++--+..+.|+++++.. +..=++|||+.||
T Consensus 30 eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E---~~~wq~Rl~~LLg 76 (81)
T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQ---QNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3444455555555555555555555555554432 2223455655555
No 14
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.55 E-value=27 Score=29.43 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=20.3
Q ss_pred hHHHHHHHHhhhhhhhhHhHHHHHHHhhh
Q 018324 287 REAEVLRVRNTNNQYVEENERLRAILGEW 315 (358)
Q Consensus 287 r~~e~~~~r~~n~q~~eEn~rlRa~l~Ew 315 (358)
=++|...-|...++=..||++||+-+++-
T Consensus 52 Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 52 LEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666788999999888764
No 15
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.47 E-value=20 Score=28.09 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=26.7
Q ss_pred hHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhh
Q 018324 251 DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQY 301 (358)
Q Consensus 251 dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~ 301 (358)
||.-+|-.++.|||.--+-+..+. ..|+|+|++|+.++..=++|
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLE-------k~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELE-------LELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 566666666666665444433333 44677888887777655554
No 16
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=53.94 E-value=44 Score=36.83 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=5.8
Q ss_pred HHHHHHHhhcc
Q 018324 104 YYSFSQKLKHI 114 (358)
Q Consensus 104 Yl~FYR~Tr~l 114 (358)
|-+|.+.-+.+
T Consensus 726 ~~~F~~ry~~L 736 (1184)
T 1i84_S 726 FQEFRQRYEIL 736 (1184)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHHHHHh
Confidence 45666654443
No 17
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=53.51 E-value=25 Score=29.33 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=36.0
Q ss_pred hhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 018324 300 QYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQH 347 (358)
Q Consensus 300 q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~~~ 347 (358)
+..+||.|||..=.+-..|..-||.-+|.=|.-|..|..+-.--|.+-
T Consensus 48 ~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~~ 95 (104)
T 3s9g_A 48 RMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQE 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 466788888887777777777888877777778888877766666653
No 18
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.73 E-value=1e+02 Score=30.96 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=77.5
Q ss_pred HHhHHhhHHHHHHHHHhhhhcccCCCCCchh-hHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhh
Q 018324 220 ENLHFLSEEILRLQECLSKYEQSDDGSTPQV-DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTN 298 (358)
Q Consensus 220 dHNa~LSkrIL~Lq~~l~kye~~~~g~t~qv-dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n 298 (358)
+.+..+..+|=.|...|..|.++..-+.-.+ .+-.++.-|-........-.||+.+||+.=-..|.++ +|
T Consensus 60 k~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~---------V~ 130 (390)
T 1deq_A 60 EVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRK---------VI 130 (390)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH---------HH
Confidence 3457788899999999999988843332222 5567777777766677777888888887655555544 33
Q ss_pred hhhhhHhHHHHHHHhhhhhhHHHHHHHHHH-----------------hhhccHHHHHHHHHhhhcC
Q 018324 299 NQYVEENERLRAILGEWSTRAAKLERALEV-----------------ERMSNIELQKKISTRRNQH 347 (358)
Q Consensus 299 ~q~~eEn~rlRa~l~Ews~raakle~ale~-----------------er~~~~~~~~~~~~~r~~~ 347 (358)
+|-. .-.+||..|+.=-.-..|||.+.+- ..=++.++||++...+.-.
T Consensus 131 ~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv~a~~ 195 (390)
T 1deq_A 131 EQVQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIAIN 195 (390)
T ss_pred HHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHhhhhhc
Confidence 3333 4456666666666666777765432 2345677888888776543
No 19
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=49.98 E-value=52 Score=34.34 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchh--hHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHh-HHHHHHH
Q 018324 218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQV--DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAER-EAEVLRV 294 (358)
Q Consensus 218 LkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qv--dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er-~~e~~~~ 294 (358)
|-+++.-+.++|=.|..++..|+++ .-++-++ .+-..|..|-........-.+|+.+||+.-..-|.++ |..+++|
T Consensus 55 LdkqErDltkrINELKnqLEdlsKn-sKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnI 133 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQKN-NKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHI 133 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHH-HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHH-----------------HHhhhccHHHHHHHHHh
Q 018324 295 RNTNNQYVEENERLRAILGEWSTRAAKLERAL-----------------EVERMSNIELQKKISTR 343 (358)
Q Consensus 295 r~~n~q~~eEn~rlRa~l~Ews~raakle~al-----------------e~er~~~~~~~~~~~~~ 343 (358)
++ ||.+|++=-.-..|||.+. +++.-+-.++|||+.++
T Consensus 134 rv-----------LQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 134 QL-----------LQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHH
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=49.61 E-value=1.1e+02 Score=25.28 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=36.3
Q ss_pred HHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHH
Q 018324 262 ELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKL 322 (358)
Q Consensus 262 elRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakl 322 (358)
....+.+|+|.++.+|..-+..+++-+--..++-....+-.+.-.-+-.-+++=..+++.|
T Consensus 42 ~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 42 KMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888999999999888888877766665555444443333333333333333333333
No 21
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=48.62 E-value=29 Score=27.27 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=44.3
Q ss_pred hhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 284 VAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 284 i~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
++|++.||-++... -+-||+-|..++.=+.|||..+..-+.|.-.|-|+.+.-|.
T Consensus 12 l~~Kq~EI~rLnvl-------vgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~~~ 66 (74)
T 2q6q_A 12 LREKQNEIFELKKI-------AETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSDANS 66 (74)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhccccch
Confidence 57888888888765 35689999999999999999999999999899888765443
No 22
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=47.52 E-value=16 Score=27.57 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhhhhhHhHHHHHHHhhh
Q 018324 289 AEVLRVRNTNNQYVEENERLRAILGEW 315 (358)
Q Consensus 289 ~e~~~~r~~n~q~~eEn~rlRa~l~Ew 315 (358)
..|+++.-.+.+...|++||++.|.+-
T Consensus 25 ~kv~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 25 AKIQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 357888888999999999999998764
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.00 E-value=80 Score=26.86 Aligned_cols=100 Identities=10% Similarity=0.195 Sum_probs=50.8
Q ss_pred HHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHh
Q 018324 217 YQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRN 296 (358)
Q Consensus 217 YLkdHNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~ 296 (358)
||+.=-.++.+++-.+... ..| +..+...++-+ +| =-++-|+-+++.+....+..|++.+.|+..+..
T Consensus 29 ~L~~vA~~vd~km~ei~~~-~~~-----~~l~~~r~aVL-aA-----LNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~ 96 (138)
T 3hnw_A 29 YLQRVASYINNKITEFNKE-ESY-----RRMSAELRTDM-MY-----LNIADDYFKAKKMADSLSLDIENKDKEIYDLKH 96 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHH-----HTSCHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-cCC-----CCCCHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777665422 001 11111122111 11 024445555555555555556666655555443
Q ss_pred h-------hhhhhhHhHHHHHHHhhhhhhHHHHHHHHHH
Q 018324 297 T-------NNQYVEENERLRAILGEWSTRAAKLERALEV 328 (358)
Q Consensus 297 ~-------n~q~~eEn~rlRa~l~Ews~raakle~ale~ 328 (358)
- ++.-..|++.|+.-+++-..+.++||.-|+.
T Consensus 97 el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 97 ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3334445566666666666666666665543
No 24
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.88 E-value=1.7e+02 Score=25.62 Aligned_cols=58 Identities=26% Similarity=0.246 Sum_probs=23.4
Q ss_pred hhHHHHHhHHHHHH-HHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHH
Q 018324 265 TLSAEMNQLQSELR-LARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKL 322 (358)
Q Consensus 265 a~~Ae~~q~~~el~-~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakl 322 (358)
....+.+++.+||. +.=||.+|=..=+..-|.........|+.|++-|.|-.++-+.+
T Consensus 76 ~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 76 KAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444442 34444444332222222222333344444444444444443333
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=42.59 E-value=1.4e+02 Score=27.06 Aligned_cols=6 Identities=0% Similarity=0.523 Sum_probs=2.5
Q ss_pred HHHHHH
Q 018324 229 ILRLQE 234 (358)
Q Consensus 229 IL~Lq~ 234 (358)
|+.||.
T Consensus 10 L~~LQ~ 15 (256)
T 3na7_A 10 LIEISH 15 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=40.71 E-value=1.1e+02 Score=24.44 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=19.0
Q ss_pred hhhhhHhHHHHHHHhhhhhhHHHH
Q 018324 299 NQYVEENERLRAILGEWSTRAAKL 322 (358)
Q Consensus 299 ~q~~eEn~rlRa~l~Ews~raakl 322 (358)
..-..||++|+.-..-|..|--.|
T Consensus 51 ~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 51 EELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 337779999999999998886554
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.86 E-value=1.7e+02 Score=24.76 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=64.4
Q ss_pred hHHhhhhhchhHHhhh------HHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHH
Q 018324 251 DLAHLLAARDQELRTL------SAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLER 324 (358)
Q Consensus 251 dl~h~la~r~qelRa~------~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ 324 (358)
.+|..++.+=.|++.- +.+.--+=.-|..|--++..+ .++..++.......+|...|.--|-+-......++.
T Consensus 32 ~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~-~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~ 110 (138)
T 3hnw_A 32 RVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAK-KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK 110 (138)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888887777744 333333334444444444433 346667777777888888888888888888888888
Q ss_pred HHHHhhhccHHHHHHHHHhh
Q 018324 325 ALEVERMSNIELQKKISTRR 344 (358)
Q Consensus 325 ale~er~~~~~~~~~~~~~r 344 (358)
.++.-+-.+-+|++++.++-
T Consensus 111 e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88877777778888777763
No 28
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=39.54 E-value=24 Score=26.28 Aligned_cols=47 Identities=32% Similarity=0.579 Sum_probs=33.3
Q ss_pred CCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHH
Q 018324 245 GSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAA 320 (358)
Q Consensus 245 g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raa 320 (358)
..+|-||+-..|+.-+.-|.+++|| +-+-+-.+||-..|..|..|-|
T Consensus 3 aaspavdigdrldelekalealsae-----------------------------dghddvgqrlesllrrwnsrra 49 (60)
T 1pzq_A 3 AASPAVDIGDRLDELEKALEALSAE-----------------------------DGHDDVGQRLESLLRRWNSRRA 49 (60)
T ss_dssp SCCSCSTTHHHHHHHHHHHHHHTTS-----------------------------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcccchhhHHHHHHHHHHHhccc-----------------------------ccccHHHHHHHHHHHHHhhccc
Confidence 4479999988888777777788777 2233445677777888876654
No 29
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=39.38 E-value=88 Score=28.68 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=19.1
Q ss_pred HhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhh
Q 018324 263 LRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTN 298 (358)
Q Consensus 263 lRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n 298 (358)
+....|++.+++.++..|++.++.-+.+..|.+.+.
T Consensus 72 l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~ 107 (369)
T 4dk0_A 72 LNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLY 107 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555443
No 30
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=38.81 E-value=32 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=21.2
Q ss_pred HHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhh
Q 018324 268 AEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYV 302 (358)
Q Consensus 268 Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~ 302 (358)
-|-+++|-| |..||.||.+++..|.+-.
T Consensus 7 ~ENekLhk~-------ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKE-------IEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHhhHHHH
Confidence 356677765 5789999999998887644
No 31
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=38.28 E-value=6.7 Score=33.25 Aligned_cols=7 Identities=14% Similarity=0.244 Sum_probs=2.9
Q ss_pred ccchhhH
Q 018324 37 HSIFGSV 43 (358)
Q Consensus 37 ~~~~g~~ 43 (358)
-|+.|+.
T Consensus 23 fSlL~~~ 29 (115)
T 2ksd_A 23 FSMLLAL 29 (115)
T ss_dssp SCCSHHH
T ss_pred HHHHHHH
Confidence 3444443
No 32
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=37.92 E-value=1e+02 Score=25.83 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=23.1
Q ss_pred hhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhh
Q 018324 257 AARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNN 299 (358)
Q Consensus 257 a~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~ 299 (358)
+-||..+..|.-|++.+++|+..- ..|-...|.+++.-.+
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~ 50 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVS 50 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 456666666777777777776543 4455555555544333
No 33
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=36.99 E-value=2.5e+02 Score=27.32 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=33.3
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHh
Q 018324 305 NERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTR 343 (358)
Q Consensus 305 n~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~ 343 (358)
+++|..-|.|=-.--.+||..|+.....+.|+.|+++++
T Consensus 207 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 245 (373)
T 3hhm_B 207 YDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSI 245 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567888888877778899999999999999999998865
No 34
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=36.11 E-value=95 Score=25.47 Aligned_cols=67 Identities=22% Similarity=0.214 Sum_probs=37.0
Q ss_pred HHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhhcCC
Q 018324 269 EMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRNQHG 348 (358)
Q Consensus 269 e~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~~~~ 348 (358)
||.+.+.-|..|+.-+.+.+ ..+-++.-|..-+=|-|-|=.++++|=+.. +-+++|.|..||.+..
T Consensus 30 El~~A~dKl~~A~~Am~~~~-------y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~-------~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 30 ELKLAQDKYAAAQIAMTAES-------YKKARLLAEQAELDARLAESKVLTQKSKDQ-------LGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccc-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 55555555555555444433 222234445555555555555555555444 4578888888888764
Q ss_pred C
Q 018324 349 P 349 (358)
Q Consensus 349 ~ 349 (358)
+
T Consensus 96 ~ 96 (98)
T 4fm3_A 96 E 96 (98)
T ss_dssp -
T ss_pred C
Confidence 4
No 35
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=35.23 E-value=86 Score=27.10 Aligned_cols=47 Identities=26% Similarity=0.382 Sum_probs=18.6
Q ss_pred chhhH-HhhhhhchhHHhhhHH---HHHhHHHHHHHHHhhhhHhHHHHHHHH
Q 018324 248 PQVDL-AHLLAARDQELRTLSA---EMNQLQSELRLARSFVAEREAEVLRVR 295 (358)
Q Consensus 248 ~qvdl-~h~la~r~qelRa~~A---e~~q~~~el~~ar~li~er~~e~~~~r 295 (358)
|+.|| +.++.+|- +++...+ +.+.+..++..+.+-+.-.+.|+.++.
T Consensus 2 ~~s~LEd~L~~~r~-~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~ 52 (135)
T 2e7s_A 2 PLGSLEEQLNKSLK-TIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLR 52 (135)
T ss_dssp ----CCSTTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHH
T ss_pred CcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 55666 44444443 3332222 222333344444444455555555543
No 36
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=34.15 E-value=1.5e+02 Score=22.46 Aligned_cols=64 Identities=19% Similarity=0.099 Sum_probs=46.5
Q ss_pred hhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHH
Q 018324 260 DQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLERALEV 328 (358)
Q Consensus 260 ~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ale~ 328 (358)
+.|+|+.++.++....|++ +.|++=++.+..|... =-=+=.+..++...+|..-+.++..+|+.
T Consensus 2 peel~~~a~~~~~~~~~i~---~~l~~l~~~v~~l~~~--W~G~Aa~af~~~~~~w~~~a~~l~~~L~~ 65 (94)
T 4i0x_A 2 IDEVGALSKFAASLADQMR---AGSNSLDRDVQSLFGV--WKGSAADAYRSGWDEMQDGATKVWNALTD 65 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHGGGT--CCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888888887775 5566666677766632 11234567888999999999999999974
No 37
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=30.79 E-value=2.2e+02 Score=25.69 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=17.2
Q ss_pred hhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHhh
Q 018324 264 RTLSAEMNQLQSELRLARSFVAEREAEVLRVRNT 297 (358)
Q Consensus 264 Ra~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~ 297 (358)
..+.+++.++++++..|++.++.-+.+..|.+.+
T Consensus 72 ~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L 105 (341)
T 3fpp_A 72 KEVEATLMELRAQRQQAEAELKLARVTYSRQQRL 105 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555445555555444
No 38
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=30.69 E-value=25 Score=26.47 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=28.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhccccccch
Q 018324 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (358)
Q Consensus 39 ~~g~~~y~~~L~~yA~~~~~~pw~~~~~~~~~~ 71 (358)
++||..||+..-+|.+.-.+.-|-+.|+-...|
T Consensus 18 L~~Ga~FC~a~W~y~~TQ~GIeWnlSPVGrVtP 50 (56)
T 1v54_K 18 LASGATFCVAVWVYMATQIGIEWNPSPVGRVTP 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCCCTTTCCC
T ss_pred eecchhhhHhhHhhhheeeceeeccCcccccCc
Confidence 579999999999999999999999999866555
No 39
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=30.02 E-value=62 Score=24.93 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=4.4
Q ss_pred hHhHHHHHHHH
Q 018324 285 AEREAEVLRVR 295 (358)
Q Consensus 285 ~er~~e~~~~r 295 (358)
+++|.+|+++|
T Consensus 35 ~~kd~eI~eLr 45 (67)
T 1zxa_A 35 SEKEEEIQELK 45 (67)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 40
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.93 E-value=1.3e+02 Score=23.42 Aligned_cols=42 Identities=21% Similarity=0.099 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhh
Q 018324 273 LQSELRLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGE 314 (358)
Q Consensus 273 ~~~el~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~E 314 (358)
+|..|+.....|..||.-|..+...=+++-+|...||.-|+.
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333334455555566655554
No 41
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=29.40 E-value=85 Score=23.72 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=20.4
Q ss_pred HHHHHHHhhhhhhhhHhHHHHHHHh
Q 018324 289 AEVLRVRNTNNQYVEENERLRAILG 313 (358)
Q Consensus 289 ~e~~~~r~~n~q~~eEn~rlRa~l~ 313 (358)
.-+|+.|+.-..-.+||+|||-.+.
T Consensus 22 n~lqh~r~vaaaks~en~rlr~l~k 46 (63)
T 2c9l_Y 22 QLLQHYREVAAAKSSENDRLRLLLK 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHH
Confidence 3567888888888999999997764
No 42
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.32 E-value=48 Score=25.56 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=18.7
Q ss_pred hhhHhHHHHHHHHhhhhhhhhHhHHHHHHHh
Q 018324 283 FVAEREAEVLRVRNTNNQYVEENERLRAILG 313 (358)
Q Consensus 283 li~er~~e~~~~r~~n~q~~eEn~rlRa~l~ 313 (358)
.|..||..|..+...+++.-+|...||.-|+
T Consensus 19 ~i~~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 19 ILMLKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666664444
No 43
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=28.46 E-value=90 Score=27.19 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=34.8
Q ss_pred HHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhH------HHHHHHHHHhhh
Q 018324 279 LARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRA------AKLERALEVERM 331 (358)
Q Consensus 279 ~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~ra------akle~ale~er~ 331 (358)
+||.| +=.+.+|..++..|..- -.++.+.+|..|..|. ..|-.||+.-.+
T Consensus 115 Lar~L-gl~~~~I~~I~~~~~~d--~~eq~~~mL~~W~~r~g~~At~~~L~~AL~~~~~ 170 (191)
T 2gf5_A 115 LARQL-KVSDTKIDSIEDRYPRN--LTERVRESLRIWKNTEKENATVAHLVGALRSCQM 170 (191)
T ss_dssp HHHHT-TCCHHHHHHHHHHSSSC--SHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHTC
T ss_pred HHHHc-CCCHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcCc
Confidence 34442 55689999998876432 3478899999998764 667777776443
No 44
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.42 E-value=2.2e+02 Score=22.48 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=16.5
Q ss_pred HHHHHHHhhhhhhhhHhHHHHHHHhhhhhhHHHHHH
Q 018324 289 AEVLRVRNTNNQYVEENERLRAILGEWSTRAAKLER 324 (358)
Q Consensus 289 ~e~~~~r~~n~q~~eEn~rlRa~l~Ews~raakle~ 324 (358)
+|++-+|.+.+--.+=...|-.|+.+-..--+.|+.
T Consensus 25 aEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ 60 (78)
T 3iv1_A 25 AELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344445555554444444555555443333333333
No 45
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=28.35 E-value=1.4e+02 Score=27.76 Aligned_cols=19 Identities=5% Similarity=0.405 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 018324 157 ICAASFMSVYIGYVHQYNS 175 (358)
Q Consensus 157 i~al~~li~YIvkVrrFNk 175 (358)
++.+|.++++++=..+|.+
T Consensus 152 ~vliPv~i~F~~Fa~hFYr 170 (214)
T 4hkr_A 152 VVLIPVMIIFMAFAIHFYR 170 (214)
T ss_dssp HHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6678999999998888877
No 46
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=27.77 E-value=2.4e+02 Score=22.64 Aligned_cols=96 Identities=14% Similarity=0.229 Sum_probs=55.3
Q ss_pred HhhHHHHHHHHHhhhhcccC-----CCCCchh--hHHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHh
Q 018324 224 FLSEEILRLQECLSKYEQSD-----DGSTPQV--DLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRN 296 (358)
Q Consensus 224 ~LSkrIL~Lq~~l~kye~~~-----~g~t~qv--dl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~ 296 (358)
..-.+|-.|.....+|...- .|.+|.. ...+.++.=++.+.....++.+++.++..+|..+-+...+..-+..
T Consensus 37 ~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~ 116 (150)
T 3ajw_A 37 QAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQT 116 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446666667666775432 3333321 2233344445555566667777777777777777777777777766
Q ss_pred hhhhh-----hhHhHHHHHHHhhhhhhH
Q 018324 297 TNNQY-----VEENERLRAILGEWSTRA 319 (358)
Q Consensus 297 ~n~q~-----~eEn~rlRa~l~Ews~ra 319 (358)
+...+ .+++-+=...+|||+.+.
T Consensus 117 L~er~~~~~~~~~~r~EQk~~DE~a~~~ 144 (150)
T 3ajw_A 117 LQDRQTAAALLAENRMDQKKMDEFAQRA 144 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 65443 344555566788887664
No 47
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=27.59 E-value=3e+02 Score=28.76 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018324 150 IIMLIEAICAASFMSVYIGYVHQYNSL 176 (358)
Q Consensus 150 iil~LEli~al~~li~YIvkVrrFNk~ 176 (358)
+++.+|+++.+..++.+....+..++.
T Consensus 103 ~ll~~~~~~~~~~l~~~~~~~~~~~r~ 129 (802)
T 4hg6_A 103 LLFAVETFSISIFFLNGFLSADPTDRP 129 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 567778888777777777666655553
No 48
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.28 E-value=2.5e+02 Score=22.95 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=11.7
Q ss_pred hhhccHHHHHHHHHhhhcC
Q 018324 329 ERMSNIELQKKISTRRNQH 347 (358)
Q Consensus 329 er~~~~~~~~~~~~~r~~~ 347 (358)
+|+....+.++..+|+.|.
T Consensus 74 ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 74 ARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666654
No 49
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.22 E-value=3.2e+02 Score=24.01 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=24.1
Q ss_pred hhchhHHhhhHHHHHhHHHHHHHHHhhhhHhHHHHHHHH
Q 018324 257 AARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVR 295 (358)
Q Consensus 257 a~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r 295 (358)
+.=.++++.|..|+.++..+++-=.-.|.||...++.|+
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~ 102 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLN 102 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333446667777777777766666666666665555443
No 50
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=27.17 E-value=53 Score=25.98 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 316 STRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 316 s~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
+.|.++||+.+.+.+-+..+|+.++..++.
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~ 34 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQLSDNQS 34 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHH
No 51
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=27.05 E-value=1.7e+02 Score=23.84 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=40.7
Q ss_pred HHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhH------HHHHHHHHHhhhccHHHHH
Q 018324 279 LARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRA------AKLERALEVERMSNIELQK 338 (358)
Q Consensus 279 ~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~ra------akle~ale~er~~~~~~~~ 338 (358)
+||. ++=.+.+|.+|+..|..- -.+....+|..|..|. .+|-.||+.-.++..-++.
T Consensus 41 LAR~-LGlse~dId~I~~~~p~d--l~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~~~v~~~ 103 (115)
T 2o71_A 41 MVLS-LGLSQTDIYRCKANHPHN--VQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVDPSLLLH 103 (115)
T ss_dssp HHHH-TTCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCCTHHHHH
T ss_pred HHHH-cCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCCHHHHHH
Confidence 3443 356699999999888642 3367899999998876 5677777776666554443
No 52
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.03 E-value=78 Score=25.68 Aligned_cols=50 Identities=28% Similarity=0.393 Sum_probs=34.8
Q ss_pred HHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhH-------HHHHHHHHHhhh
Q 018324 279 LARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRA-------AKLERALEVERM 331 (358)
Q Consensus 279 ~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~ra-------akle~ale~er~ 331 (358)
+||. ++=.+.+|..++..|..-+ .++.+++|..|..|. .+|..||+.=.+
T Consensus 30 LAr~-Lg~s~~~I~~I~~~~~~~l--~eq~~~mL~~W~~~~g~~~Atv~~L~~aL~~~~r 86 (118)
T 2of5_H 30 VALH-LGVSYREVQRIRHEFRDDL--DEQIRHMLFSWAERQAGQPGAVGLLVQALEQSDR 86 (118)
T ss_dssp HHHH-TTCCHHHHHHHHHHTTTCH--HHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHTTC
T ss_pred HHHH-cCCCHHHHHHHHHHCCCCH--HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHcCc
Confidence 4443 3667899999998774322 268899999998876 466777765433
No 53
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.31 E-value=2.3e+02 Score=25.03 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=38.4
Q ss_pred chhHhhHHHHHHHHH----HhHHhhHHHHHHHHHhhhhcccCCCCCchhhHHhhhhhchhHHhhhHHHHHhHHHHHHHHH
Q 018324 206 RLSDEQMALLQYQRE----NLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLAR 281 (358)
Q Consensus 206 ~LlEKQADLIrYLkd----HNa~LSkrIL~Lq~~l~kye~~~~g~t~qvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar 281 (358)
+|.+.|-.=++=+++ ....|-+++...+.++..--.. ++|+ +..++++..|+..+++++...|
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a---~~~D----------eakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA---SSPD----------TAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---SSCC----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCC----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 466666555544433 3344556666666666432222 2222 2356888999999999888776
Q ss_pred hhh
Q 018324 282 SFV 284 (358)
Q Consensus 282 ~li 284 (358)
...
T Consensus 134 ~k~ 136 (175)
T 3lay_A 134 VKR 136 (175)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 54
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=26.18 E-value=45 Score=30.64 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=6.5
Q ss_pred hhHhHHHHHHHh
Q 018324 302 VEENERLRAILG 313 (358)
Q Consensus 302 ~eEn~rlRa~l~ 313 (358)
..||+|||+.|+
T Consensus 49 ~~En~rLr~lL~ 60 (255)
T 2j5u_A 49 KKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 345566665554
No 55
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.74 E-value=1.5e+02 Score=21.63 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=25.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHh
Q 018324 307 RLRAILGEWSTRAAKLERALEVERMSNIELQKKISTR 343 (358)
Q Consensus 307 rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~ 343 (358)
.|++-+.-=+.|++||..+|..-|-.-..|+.++.++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666667777788888888877766556666665554
No 56
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.89 E-value=77 Score=29.94 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=32.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHhhhccHHHHHHHHHhhh
Q 018324 305 NERLRAILGEWSTRAAKLERALEVERMSNIELQKKISTRRN 345 (358)
Q Consensus 305 n~rlRa~l~Ews~raakle~ale~er~~~~~~~~~~~~~r~ 345 (358)
...|++.+...+.|..||..+|..-|-....|++++.+++.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34577778888888888888888877777778888887775
No 57
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=24.42 E-value=3.8e+02 Score=24.62 Aligned_cols=64 Identities=25% Similarity=0.343 Sum_probs=37.3
Q ss_pred hhHHHHHhHHHHHHHHHhhhhHhHHHHHHHHh-------------hhhhhhhHhHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018324 265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRN-------------TNNQYVEENERLRAILGEWSTRAAKLERALEVER 330 (358)
Q Consensus 265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~-------------~n~q~~eEn~rlRa~l~Ews~raakle~ale~er 330 (358)
-+++....-..|.+.++.-+....+|+..+|- .+++|+++-.+....|++--. ..|-+||-.||
T Consensus 118 ~v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~KK~k~gk~~~~~~~~~~~~~e~v~~~~~~le~~~~--~~lr~aL~EER 194 (253)
T 2ykt_A 118 YLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVS--DGYKTALTEER 194 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 34444444555666666666666666555553 357788888888888876544 22334444343
No 58
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=24.01 E-value=1.5e+02 Score=23.59 Aligned_cols=60 Identities=13% Similarity=0.330 Sum_probs=37.8
Q ss_pred HHHHhHHHHHHHHHhhh----hHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhH------HHHHHHHHHhh
Q 018324 268 AEMNQLQSELRLARSFV----AEREAEVLRVRNTNNQYVEENERLRAILGEWSTRA------AKLERALEVER 330 (358)
Q Consensus 268 Ae~~q~~~el~~ar~li----~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~ra------akle~ale~er 330 (358)
..++.+...+-.-|--+ +=.+.+|..++ .|.. .=.++.+.+|..|..|. .+|-.||+.-.
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~Lg~~~~~I~~ie-~~~~--~~~eq~~~mL~~W~~r~G~~AT~~~L~~AL~~~~ 88 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYLEMKDSEIRQIE-CDSE--DMKMRAKQLLVAWQDQEGVHATPENLINALNKSG 88 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTTTCCHHHHHHHH-HHCS--SHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHH-HcCC--CHHHHHHHHHHHHHHhhCcCcHHHHHHHHHHHcC
Confidence 44444555543333333 44589999998 3332 33468999999999886 56666776543
No 59
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=23.63 E-value=61 Score=23.66 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=16.4
Q ss_pred HHHHHhhhhhhhhHhHHHHHHHhh
Q 018324 291 VLRVRNTNNQYVEENERLRAILGE 314 (358)
Q Consensus 291 ~~~~r~~n~q~~eEn~rlRa~l~E 314 (358)
++++...+++-..|++||++.|..
T Consensus 20 v~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 20 IQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHHH
Confidence 455555666677788888887754
No 60
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=23.07 E-value=3.3e+02 Score=22.78 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=23.4
Q ss_pred HHHhHHHHHHHHHhhhhHhHHHHHHHHhhhhh
Q 018324 269 EMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300 (358)
Q Consensus 269 e~~q~~~el~~ar~li~er~~e~~~~r~~n~q 300 (358)
|+|-|...|..|--.+++++.+|..++..-.|
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777788888888877775444
No 61
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=22.62 E-value=70 Score=23.30 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=20.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhh
Q 018324 306 ERLRAILGEWSTRAAKLERALEVER 330 (358)
Q Consensus 306 ~rlRa~l~Ews~raakle~ale~er 330 (358)
+.=|++|+||..=-++-+..|+.||
T Consensus 15 e~RRrlLeEW~awRa~~~~~L~eer 39 (50)
T 3zwl_E 15 LHQRELLKQWTEYREKIGQEMEKSM 39 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458899999998888888887776
No 62
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=22.51 E-value=40 Score=26.91 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=28.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhccccccch
Q 018324 39 IFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIP 71 (358)
Q Consensus 39 ~~g~~~y~~~L~~yA~~~~~~pw~~~~~~~~~~ 71 (358)
++||+.||+..-+|.+.-.+.-|-+.|+-...|
T Consensus 42 L~~Ga~FC~a~W~y~~TQ~GIeWnlSPVGrVtP 74 (80)
T 2y69_K 42 LASGATFCVAVWVYMATQIGIEWNPSPVGRVTP 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCCCTTTCCC
T ss_pred eecchhHHHhhHHHhheecceeecCCcccccCc
Confidence 579999999999999999999999999866555
No 63
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.69 E-value=75 Score=20.53 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=18.1
Q ss_pred HHHHHHHhHHhhHHHHHHHHHhh
Q 018324 215 LQYQRENLHFLSEEILRLQECLS 237 (358)
Q Consensus 215 IrYLkdHNa~LSkrIL~Lq~~l~ 237 (358)
|+-||+.|+.|-++|-.|.-+..
T Consensus 2 irrlkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHH
Confidence 67799999999999988865543
No 64
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=21.64 E-value=1.4e+02 Score=23.70 Aligned_cols=52 Identities=27% Similarity=0.311 Sum_probs=35.9
Q ss_pred HHHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhH------HHHHHHHHHhhhc
Q 018324 278 RLARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRA------AKLERALEVERMS 332 (358)
Q Consensus 278 ~~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~ra------akle~ale~er~~ 332 (358)
++||.| +=.+.+|..++..|.. .-.++.+++|..|..|. ..|..||..=.+.
T Consensus 34 ~LAr~L-g~s~~~I~~I~~~~p~--~~~eq~~~mL~~W~~~~g~~AT~~~L~~aL~~i~r~ 91 (111)
T 2yqf_A 34 ELAREL-QFSVEDINRIRVENPN--SLLEQSVALLNLWVIREGQNANMENLYTALQSIDRG 91 (111)
T ss_dssp HHHHHT-TCCHHHHHHHHHHSCS--CHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHTTCC
T ss_pred HHHHHc-CCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHcCcH
Confidence 345553 6678899999976633 23467899999999886 4566777654443
No 65
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.04 E-value=1.7e+02 Score=23.89 Aligned_cols=52 Identities=12% Similarity=0.265 Sum_probs=36.9
Q ss_pred HHHhhhhHhHHHHHHHHhhhhhhhhHhHHHHHHHhhhhhhH------HHHHHHHHHhhhcc
Q 018324 279 LARSFVAEREAEVLRVRNTNNQYVEENERLRAILGEWSTRA------AKLERALEVERMSN 333 (358)
Q Consensus 279 ~ar~li~er~~e~~~~r~~n~q~~eEn~rlRa~l~Ews~ra------akle~ale~er~~~ 333 (358)
+||. ++=.+.+|.+++..|..- -.+....+|..|..|. .+|-.||+.=.++.
T Consensus 41 LAR~-LGlse~dId~I~~~~p~~--l~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~~ 98 (114)
T 2of5_A 41 MVLS-LGLSQTDIYRCKANHPHN--VQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVDP 98 (114)
T ss_dssp HHHT-TTCCHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCCT
T ss_pred HHHH-cCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCCH
Confidence 3443 356789999999888642 3367899999998876 56667776655544
No 66
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.97 E-value=67 Score=23.03 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHhHHhhHHH
Q 018324 211 QMALLQYQRENLHFLSEEI 229 (358)
Q Consensus 211 QADLIrYLkdHNa~LSkrI 229 (358)
..|+|.||....+.|-++|
T Consensus 29 kkdliaylekeianlrkki 47 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3589999988888887776
Done!