Query 018325
Match_columns 358
No_of_seqs 231 out of 1080
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 13:30:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018325.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018325hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tffa_ d.3.1.11 (A:) Ubiquiti 99.8 9.2E-21 6.7E-25 173.0 13.1 96 246-342 128-226 (228)
2 d1fnoa4 c.56.5.4 (A:1-207,A:32 46.0 6 0.00043 33.3 3.1 54 177-230 6-60 (295)
3 d1h70a_ d.126.1.3 (A:) Dimethy 39.7 16 0.0012 30.4 5.0 37 192-228 23-59 (255)
4 d1gkab_ b.60.1.1 (B:) Alpha-cr 24.8 5.8 0.00042 30.9 -0.6 27 206-232 145-174 (174)
5 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 21.5 30 0.0022 27.7 3.3 53 244-296 33-97 (146)
6 d1ohua_ f.1.4.1 (A:) Apoptosis 17.2 69 0.005 25.9 4.7 81 206-297 16-112 (172)
7 d1ueka2 d.58.26.5 (A:149-268) 12.5 58 0.0042 23.9 2.7 27 204-230 64-90 (120)
8 d2jm6b1 f.1.4.1 (B:147-308) EA 12.4 79 0.0057 24.9 3.7 52 245-296 46-109 (162)
9 d1s9ra_ d.126.1.4 (A:) Arginin 12.3 46 0.0033 29.7 2.4 31 193-223 45-75 (409)
10 d1re9a_ a.104.1.1 (A:) Cytochr 11.1 1.4E+02 0.01 25.7 5.3 60 240-299 94-160 (404)
No 1
>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.83 E-value=9.2e-21 Score=173.04 Aligned_cols=96 Identities=14% Similarity=0.285 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhChhHHhhhcC--ccHHHHHHh-hccCCccCchHHHHHHHHHhCCeEEEEecCCCceeEEEcCCCCCCC
Q 018325 246 FVRQQVVNQLKAHPEIYEGYVP--MAYSDYLKK-MNKSGEWGDHVTLQAAADSYGVKVFVLTSFKDTCYIEILPHVPKSK 322 (358)
Q Consensus 246 ~VR~~vV~yL~~n~d~f~~fV~--~~~~eYl~k-M~k~gtWGg~iELqAaA~~y~v~I~V~ts~~~~~~I~i~P~~~~~~ 322 (358)
.+|..++.||++|++.|.+|+. +++++||.+ |.+.++|||++||+|+|++|+++|.|+..++....+..........
T Consensus 128 ~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~~ 207 (228)
T d1tffa_ 128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAAT 207 (228)
T ss_dssp HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSS
T ss_pred HHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCCC
Confidence 4799999999999999999995 589999985 8999999999999999999999999998766543222222223456
Q ss_pred CeEEEEecCCCcceeeecCC
Q 018325 323 RVIFLSFWAEVHYNSIYPEG 342 (358)
Q Consensus 323 ~~I~Lsy~~~~HYdSV~p~~ 342 (358)
+.|+|+| .+.|||+|||.+
T Consensus 208 ~~I~Lly-~pgHYdiLY~~~ 226 (228)
T d1tffa_ 208 PSVYLLY-KTSHYNILYAAD 226 (228)
T ss_dssp CSEEEEE-ETTEEEEEEECC
T ss_pred CEEEEEe-CCCCcccCccCC
Confidence 7899998 568999999875
No 2
>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]}
Probab=45.96 E-value=6 Score=33.27 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=38.2
Q ss_pred ccccCCCCCCCCCC-CCCCCCCChhhhhHHHHHHHHHhhCCcEEEEecCCCChhH
Q 018325 177 KRLNQMVPVPHIPK-INGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNCQF 230 (358)
Q Consensus 177 krl~~~~p~p~~pk-~ng~iPs~de~~~d~qrL~~rL~~~GL~i~~V~GDGNCLF 230 (358)
+||.+++-+++++. -++..|+...+..--+.|.+.|+++|+....+..+||...
T Consensus 6 ~~l~~lv~i~S~S~~~~~~~p~~~~e~~~a~~l~~~l~~lG~~~~~id~~g~~~~ 60 (295)
T d1fnoa4 6 ERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLSEKGTLMA 60 (295)
T ss_dssp HHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHTCEEEEECTTCCEEE
T ss_pred HHHHHHccccccCCCccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCcEEE
Confidence 45556666666433 2345677765555557889999999999999999998643
No 3
>d1h70a_ d.126.1.3 (A:) Dimethylarginine dimethylaminohydrolase DDAH {Pseudomonas aeruginosa [TaxId: 287]}
Probab=39.73 E-value=16 Score=30.39 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=31.8
Q ss_pred CCCCCCChhhhhHHHHHHHHHhhCCcEEEEecCCCCh
Q 018325 192 NGDIPSPDEEISDHQRMLDRLQLYDLVENKVQGDGNC 228 (358)
Q Consensus 192 ng~iPs~de~~~d~qrL~~rL~~~GL~i~~V~GDGNC 228 (358)
+..-|+.+++..+|+.|.+.|+..|..+..++++..|
T Consensus 23 ~~~~~d~~~a~~e~~~l~~~L~~~Gv~V~~~~~~~~~ 59 (255)
T d1h70a_ 23 HLGKPDYAKALEQHNAYIRALQTCDVDITLLPPDERF 59 (255)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHTTSSCEEEEECCCTTC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHcCCEEEEeCCCCCC
Confidence 3445788899999999999999999999999987655
No 4
>d1gkab_ b.60.1.1 (B:) Alpha-crustacyanin {European lobster (Homarus gammarus) [TaxId: 6707]}
Probab=24.77 E-value=5.8 Score=30.89 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=21.2
Q ss_pred HHHHHHHhhCCcE---EEEecCCCChhHHH
Q 018325 206 QRMLDRLQLYDLV---ENKVQGDGNCQFRS 232 (358)
Q Consensus 206 qrL~~rL~~~GL~---i~~V~GDGNCLFRA 232 (358)
+.+.+.|+..||. +..++-+++|.+||
T Consensus 145 ~~~~~~~~~~g~~~~~l~~~~q~~~C~y~~ 174 (174)
T d1gkab_ 145 EKTAAVFNKNGVEFSKFVPVSHTAECVYRA 174 (174)
T ss_dssp HHHHHHHHHHTCCGGGCEECBCCTTCCCCC
T ss_pred HHHHHHHHHcCCCHHHeEECCCCCCCeeCC
Confidence 5677788888885 46678888999986
No 5
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=21.52 E-value=30 Score=27.68 Aligned_cols=53 Identities=8% Similarity=0.252 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhChhHHhhhcCc-------c---HHHHHHhhccCCc--cCchHHHHHHHHHh
Q 018325 244 HMFVRQQVVNQLKAHPEIYEGYVPM-------A---YSDYLKKMNKSGE--WGDHVTLQAAADSY 296 (358)
Q Consensus 244 H~~VR~~vV~yL~~n~d~f~~fV~~-------~---~~eYl~kM~k~gt--WGg~iELqAaA~~y 296 (358)
...+|+.+-+.+++|...|+.++.. + |..=..+|-.+|. ||--+.|.+++-.+
T Consensus 33 ~~tik~~v~~i~~kh~~~F~~ml~~L~i~~~~~~~~f~~V~~elF~DG~~NWGRIVaLfaFg~~l 97 (146)
T d1k3ka_ 33 LSPIKLYITGLMRDKESLFEAMLANVRFHSTTGIDQLGLSMLQVSGDGNMNWGRALAILTFGSFV 97 (146)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHTHHHHHCSSCSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999998752 2 2222345667884 99999999887654
No 6
>d1ohua_ f.1.4.1 (A:) Apoptosis regulator ced-9 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=17.16 E-value=69 Score=25.91 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=54.4
Q ss_pred HHHHHHHhhCCcEEEEecCCCChhHHHHHHHHhcCChhHHHHHHHHHHHHhhChhHHhhhcC-------ccHHHHHHhhc
Q 018325 206 QRMLDRLQLYDLVENKVQGDGNCQFRSLSDQLYRSPEHHMFVRQQVVNQLKAHPEIYEGYVP-------MAYSDYLKKMN 278 (358)
Q Consensus 206 qrL~~rL~~~GL~i~~V~GDGNCLFRALS~qL~gsqd~H~~VR~~vV~yL~~n~d~f~~fV~-------~~~~eYl~kM~ 278 (358)
.-|.-+|.+.|+.....|+-+. +....|..||+..-+..++|+..|..++. ..+..+..-+.
T Consensus 16 DYi~yrL~q~G~~~~~~~~~p~-----------~~~~~~~~Lr~vg~elE~~h~~~f~~~~~qL~i~~~~a~~~f~~v~~ 84 (172)
T d1ohua_ 16 DYFTHRIRQNGMEWFGAPGLPS-----------GVQPEHEMMRVMGTIFEKKHAENFETFSEQLLAVPRISFSLYQDVVR 84 (172)
T ss_dssp HHHHHHHHHTTCCCTTCCCCTT-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHT
T ss_pred HHHHHHHccCCCCccCCCCCCC-----------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 3456678888886554444433 23556888999999999999999987642 34555544332
Q ss_pred --------cC-CccCchHHHHHHHHHhC
Q 018325 279 --------KS-GEWGDHVTLQAAADSYG 297 (358)
Q Consensus 279 --------k~-gtWGg~iELqAaA~~y~ 297 (358)
++ =.||--+.|.|+|-.+-
T Consensus 85 ~v~~~elf~~ginWGRIVal~aF~g~la 112 (172)
T d1ohua_ 85 TVGNAQTDQSPMSYGRLIGLISFGGFVA 112 (172)
T ss_dssp TSCC------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHH
Confidence 22 37999999998876663
No 7
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=12.54 E-value=58 Score=23.94 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhCCcEEEEecCCCChhH
Q 018325 204 DHQRMLDRLQLYDLVENKVQGDGNCQF 230 (358)
Q Consensus 204 d~qrL~~rL~~~GL~i~~V~GDGNCLF 230 (358)
+-..+.+.|...|-....+.|-|.|+|
T Consensus 64 ~l~~~~~~l~~~g~~~~~mSGSGst~F 90 (120)
T d1ueka2 64 ELKEVRGRMRALGLRGVLMSGSGSAFF 90 (120)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTSSCEE
T ss_pred hHHHHHHHHHHhhhhheeecCCCCeEE
Confidence 345678888999988889999999998
No 8
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.37 E-value=79 Score=24.95 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhChhHHhhhcC------c----cHHHHHHhhccCC--ccCchHHHHHHHHHh
Q 018325 245 MFVRQQVVNQLKAHPEIYEGYVP------M----AYSDYLKKMNKSG--EWGDHVTLQAAADSY 296 (358)
Q Consensus 245 ~~VR~~vV~yL~~n~d~f~~fV~------~----~~~eYl~kM~k~g--tWGg~iELqAaA~~y 296 (358)
..||+..-+..++|+..|..++. . .|..=...|-.+| .||--+.|.++|-.+
T Consensus 46 ~~L~~~g~ele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elf~dG~~NWGRIval~~F~~~l 109 (162)
T d2jm6b1 46 ETLRRVGDGVQRNHETAFQGMLRKLDIKNEGDVKSFSRVMVHVFKDGVTNWGRIVTLISFGAFV 109 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCSSTTHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 34555555555566666654431 1 1333344666676 399999998877655
No 9
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini [TaxId: 2094]}
Probab=12.31 E-value=46 Score=29.72 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=27.5
Q ss_pred CCCCCChhhhhHHHHHHHHHhhCCcEEEEec
Q 018325 193 GDIPSPDEEISDHQRMLDRLQLYDLVENKVQ 223 (358)
Q Consensus 193 g~iPs~de~~~d~qrL~~rL~~~GL~i~~V~ 223 (358)
..+|..+++..+|+.|.+.|+..|.++..+.
T Consensus 45 d~~~~~~~a~~Ehd~f~~~L~~~Gv~V~~l~ 75 (409)
T d1s9ra_ 45 SAILESHDARKEHKQFVAELKANDINVVELI 75 (409)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTTCEEEEHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEhH
Confidence 4688899999999999999999999998753
No 10
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida [TaxId: 303]}
Probab=11.11 E-value=1.4e+02 Score=25.70 Aligned_cols=60 Identities=8% Similarity=0.139 Sum_probs=41.6
Q ss_pred CChhHHHHHHHHHHHHh-hChhHHhhhcCccHHHHHHhhccCCc------cCchHHHHHHHHHhCCe
Q 018325 240 SPEHHMFVRQQVVNQLK-AHPEIYEGYVPMAYSDYLKKMNKSGE------WGDHVTLQAAADSYGVK 299 (358)
Q Consensus 240 sqd~H~~VR~~vV~yL~-~n~d~f~~fV~~~~~eYl~kM~k~gt------WGg~iELqAaA~~y~v~ 299 (358)
++..|..+|+.+...+. +.-..|.+.+..-.++.++++.+.|. ++..+-+.+++.+++++
T Consensus 94 D~p~H~~~R~~l~~~Fs~~~l~~~~~~i~~~~~~ll~~~~~~g~~D~v~~~a~~l~~~vi~~llG~p 160 (404)
T d1re9a_ 94 DPPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLP 160 (404)
T ss_dssp CTTHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGGGSEEEHHHHTTTHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHhccCcCCcchHHHHHHHHHHHHHHHHhhhhccCceeeeehhhhHHHHHHHHHHHhhc
Confidence 35679999998776654 22345566666667788888876653 45567788889988875
Done!