BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018327
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase From Salmonella Typhi
pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed
With Ctp
Length = 259
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 118/248 (47%), Gaps = 28/248 (11%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
KA+IL GG GTRL T+ PKP+VE KP++ H ++ G+ + ++ Y+ V+
Sbjct: 4 KAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63
Query: 62 NFLKEFEAKLGIKIICSQET---------EPLG-----------TAGPLALARDKLIDDT 101
+ + + E EP T G L + + DD
Sbjct: 64 EYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD- 122
Query: 102 GEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVD-EPSKYGVVVMEESTGKVEKFVEK 160
E F D +++ I+FHKAHG +A++ P ++G + ++ G+V F EK
Sbjct: 123 -EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGRFGALDIQ--AGQVRSFQEK 179
Query: 161 PKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQP 220
PK G IN G ++LNP+V+D I+ T+ E+E +A +G+L A PGFW +
Sbjct: 180 PKG-DGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTL 238
Query: 221 RD--YITG 226
RD Y+ G
Sbjct: 239 RDKVYLEG 246
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 157/357 (43%), Gaps = 43/357 (12%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKA IL G G RL P+T + PK V +KP+I +QIE L+ G+ ++ + ++ + +
Sbjct: 1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNK-- 58
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALAR--DKLIDDTGEPFFVLNSDVISEYPF 118
+ FE KL I +Q+ + GT + A+ D+ + G+ FF ++ +
Sbjct: 59 ----EYFEKKLKEISIVTQKDDIKGTGAAILSAKFNDEALIIYGDLFFSNEKEICNIITL 114
Query: 119 AEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
E + V P YGV+V+ ++ + K +EKP++ N INAGIY LN
Sbjct: 115 KE--------NAIIGVKVSNPKDYGVLVL-DNQNNLSKIIEKPEIPPSNLINAGIYKLNS 165
Query: 179 AV---LDRIELRPTSIEKEVFPKIAL---EGKLFAMVLPGFWMDIGQPRDYI-TGXXXXX 231
+ LD+I + E E+ I L + ++ + G+WMDIG+P + I
Sbjct: 166 DIFTYLDKISISERG-ELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALD 224
Query: 232 XXXXXXXXXXXATGANIVGNVLVHESAQ------------IGEGCLIGPDVAVGPGCV-- 277
I G V++ E A+ IG+G IGP+ + P +
Sbjct: 225 NLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILV 284
Query: 278 ----VESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
+ + V + +M G +I + + S+I G + N+ ++V V
Sbjct: 285 EKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKV 341
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 12/122 (9%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+KA+IL G GTRLRPLT + PK LV+ KP+I +QIE LK G+ ++++ + Y E
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKE-Q 84
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
++LKE K G++++ + + L L +++L + +V+++D Y F
Sbjct: 85 FDYLKE---KYGVRLVFNDKYADYNNFYSLYLVKEELANS-----YVIDAD---NYLFKN 133
Query: 121 MI 122
M
Sbjct: 134 MF 135
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+KA+IL G GTRLRPLT + PK LV+ KP+I +QIE LK G+ ++++ + Y E
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKE-Q 84
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKL 97
++LKE K G++++ + + L L +++L
Sbjct: 85 FDYLKE---KYGVRLVFNDKYADYNNFYSLYLVKEEL 118
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 17/230 (7%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK ++L GG GTRL P+T +V K L+ +KPMI + + L G+ ++++ + +
Sbjct: 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
L ++ G++ + EP G A + +D + D + VL +V + F+E
Sbjct: 64 YRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGD--SKVALVLGDNVFYGHRFSE 121
Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
++ + A I V +P +GVV +S G+V EKP N + G+Y +
Sbjct: 122 ILRRAASLEDGAVIFGYYVRDPRPFGVVEF-DSEGRVISIEEKPSRPKSNYVVPGLYFYD 180
Query: 178 PAVL---------DRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG 218
V+ DR EL TS+ +E L +L + W+D G
Sbjct: 181 NQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMA--WLDTG 228
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 25/233 (10%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P TL++ K L+ +KPMI + + L G+ E+++ Q
Sbjct: 13 KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 72
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L + G+ + + + P G A + + +D VL ++ + F E+
Sbjct: 73 QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 130
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
+ AS+ V +P +YGVV ++ GK EKP N G+Y +
Sbjct: 131 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 189
Query: 179 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 218
V+D R EL T + + + + + G+ +A W+D G
Sbjct: 190 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYA------WLDTG 236
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 112/227 (49%), Gaps = 13/227 (5%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V + L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P GTA + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGTAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
+E +K G + V++P +YGVV +++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQA-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIG 218
+V++ + L+P++ +E +I +E G+L AM+ G+ W+D G
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTG 228
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In Complex
With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 17/228 (7%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP-EV 59
MK +IL GG G+RL P+T K L+ PMI H + LK +T++++ +
Sbjct: 25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGD 84
Query: 60 MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--YP 117
+++FL + + G+ + + G A L L D + +D +L ++ S+ P
Sbjct: 85 VVSFLGSGQ-EFGVSFTYRVQDKAGGIAQALGLCEDFVGND--RMVVILGDNIFSDDIRP 141
Query: 118 FAEMIEFHKAHGGEASIM--VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYL 175
+ E EF G ++ VD+P ++GV ++ K+ + EKPK + GIYL
Sbjct: 142 YVE--EFTNQKEGAKVLLQSVDDPERFGVANIQNR--KIIEIEEKPKEPKSSYAVTGIYL 197
Query: 176 LNPAVLDRI-ELRPTSIEK----EVFPKIALEGKLFAMVLPGFWMDIG 218
+ V I EL+P++ + ++ G L + G+W D G
Sbjct: 198 YDSKVFSYIKELKPSARGELEITDINNWYLKRGVLTYNEMSGWWTDAG 245
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 25/233 (10%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P TL++ K L+ +KPMI + + L G+ E+++ Q
Sbjct: 14 KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 73
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L + G+ + + + P G A + + +D VL ++ + F E+
Sbjct: 74 QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 131
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
+ AS+ V +P +YGVV ++ GK EKP N G+Y +
Sbjct: 132 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 190
Query: 179 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 218
V+D R EL T + + + + + G+ +A W+D G
Sbjct: 191 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYA------WLDTG 237
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 25/233 (10%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P TL++ K L+ +KPMI + + L G+ E+++ Q
Sbjct: 4 KGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 63
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L + G+ + + + P G A + + +D VL ++ + F E+
Sbjct: 64 QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 121
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
+ AS+ V +P +YGVV ++ GK EKP N G+Y +
Sbjct: 122 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 180
Query: 179 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 218
V+D R EL T + + + + + G+ +A W+D G
Sbjct: 181 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYA------WLDTG 227
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 27/234 (11%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T V K L+ +KP I + + L G+ E+++ + +
Sbjct: 5 KGIILAGGSGTRLHPITRGVSKQLLPIYDKPXIYYPLSVLXLAGIREILIITTPEDKGYF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF-FVLNSDVISEYPFAE 120
L ++ GI++ +++ P G A + L GEP VL ++ F+
Sbjct: 65 QRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFL---NGEPSCLVLGDNIFFGQGFSP 121
Query: 121 MIEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
+ A A++ V +P ++GVV +++ + EKPK N G+Y +
Sbjct: 122 KLRHVAARTEGATVFGYQVXDPERFGVVEFDDNFRAI-SLEEKPKQPKSNWAVTGLYFYD 180
Query: 178 PAVL---------DRIELRPTSIEKEVFP----KIALEGKLFAMVLPGFWMDIG 218
V+ +R EL TSI + + L G+ FA W+D G
Sbjct: 181 SKVVEYAKQVKPSERGELEITSINQXYLEAGNLTVELLGRGFA------WLDTG 228
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 112/233 (48%), Gaps = 13/233 (5%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVDPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
+E +K G + V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQK-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYI 224
+V++ + L+P++ +E +I +E G+L AM+ G+ W+D G + I
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 25/233 (10%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P TL++ K L+ +KP I + + L G+ E+++ Q
Sbjct: 4 KGIILAGGSGTRLHPATLAISKQLLPVYDKPXIYYPLSTLXLAGIREILIISTPQDTPRF 63
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L + G+ + + + P G A + + +D VL ++ + F E+
Sbjct: 64 QQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDFHEL 121
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
+ AS+ V +P +YGVV ++ GK EKP N G+Y +
Sbjct: 122 LGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQ 180
Query: 179 AVLD---------RIELRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG 218
V+D R EL T + + + + + G+ +A W+D G
Sbjct: 181 QVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIXGRGYA------WLDTG 227
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 111/233 (47%), Gaps = 13/233 (5%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
+E +K G + V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQK-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYI 224
+V++ + L+P++ +E +I +E G+L AM+ G+ W+D G + I
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 13/233 (5%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V + L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
+E +K G + V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQK-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYI 224
+V++ + L+P++ +E +I +E G+L AM+ G+ W+D G + I
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 13/227 (5%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL-N 177
+E +K G + V++P +YGVV +++ G EKP N G+Y N
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 178 PAVLDRIELRPTS---IEKEVFPKIALEGKLFAMVLPG---FWMDIG 218
VL L+P++ +E +I LE ++ L G W+D G
Sbjct: 182 DVVLMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTG 228
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 13/227 (5%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
+E +K G + V++P +YGVV +++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIG 218
V+ + L+P++ +E +I LE G+L AM+ G+ W+D G
Sbjct: 182 DVVQMAKNLKPSARGELEITDINRIYLEQGRLSVAMMGRGYAWLDTG 228
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 113/233 (48%), Gaps = 13/233 (5%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V + L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
+E +K G + V++P +YGVV +++ G EKP N G++ +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQA-GTAVSLEEKPLQPKSNYAVTGLFFYDN 181
Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALE-GKL-FAMVLPGF-WMDIGQPRDYI 224
+V++ + L+P++ +E +I +E G+L AM+ G+ W+D G + I
Sbjct: 182 SVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 15/228 (6%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKL-IDDTGEPFFVLNSDVISEYPFAE 120
L ++ G+ + + P G A + + + DD VL ++ + +
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGADDCA---LVLGDNIFYGHDLPK 121
Query: 121 MIE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 177
++E +K G + V++P +YGVV +++ G EKP N G+Y +
Sbjct: 122 LMEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYD 180
Query: 178 PAVLDRIE-LRPTS---IEKEVFPKIALEGKLFAMVLPG---FWMDIG 218
V+ + L+P++ +E +I LE ++ L G W+D G
Sbjct: 181 NDVVQMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTG 228
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 13/227 (5%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
+E +K G + V++P +YGVV +++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDKN-GTAISLEEKPLEPKSNYAVTGLYFYDN 181
Query: 179 AVLDRIE-LRPTS---IEKEVFPKIALEGKLFAMVLPG---FWMDIG 218
V+ + L+P++ +E +I LE ++ L G W+D G
Sbjct: 182 DVVQMAKNLKPSARGELEITDINRIYLEQGRLSVALMGRGYAWLDTG 228
>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From
Mycobacterium Tuberculosis Complex With N-Acetyl
Glucosamine 1-Phosphate
Length = 391
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 13/203 (6%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
L+L G GTR+R T PK L A + M+ H + A+ + +++ + + + +
Sbjct: 12 LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 68
Query: 64 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
+ E LG I + + PLGT + L DD V + D ++ A++
Sbjct: 69 VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 128
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 175
I H+A +++ +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 129 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 188
Query: 176 LNPAVLDRI--ELRPTSIEKEVF 196
+ A L L + ++E++
Sbjct: 189 FDIAALRSALSRLSSNNAQQELY 211
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 259 QIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 313
QIG C++GP DVAVG G V ++ H SSS IG + VG
Sbjct: 299 QIGGRCVVGPDTTLTDVAVGDGASV----------------VRTHG--SSSSIGDGAAVG 340
Query: 314 QWARVENMTILGED 327
+ + T LG D
Sbjct: 341 PFTYLRPGTALGAD 354
>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Acetyl Coenzyme A And
Uridine-Diphosphate-N-Acetylglucosamine
pdb|3ST8|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Coenzyme A, Glucosamine 1-Phosphate And
Uridine-Diphosphate-N- Acetylglucosamine
Length = 501
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 13/203 (6%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
L+L G GTR+R T PK L A + M+ H + A+ + +++ + + + +
Sbjct: 16 LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 72
Query: 64 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
+ E LG I + + PLGT + L DD V + D ++ A++
Sbjct: 73 VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 132
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 175
I H+A +++ +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 133 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 192
Query: 176 LNPAVLDRI--ELRPTSIEKEVF 196
+ A L L + ++E++
Sbjct: 193 FDIAALRSALSRLSSNNAQQELY 215
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 259 QIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 313
QIG C++GP DVAVG G V ++ H SSS IG + VG
Sbjct: 303 QIGGRCVVGPDTTLTDVAVGDGASV----------------VRTHG--SSSSIGDGAAVG 344
Query: 314 QWARVENMTILGED 327
+ + T LG D
Sbjct: 345 PFTYLRPGTALGAD 358
>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine
pdb|3D98|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis,
Ligand-Free Form
pdb|3DJ4|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine.
pdb|3DK5|A Chain A, Crystal Structure Of Apo-Glmu From Mycobacterium
Tuberculosis
Length = 495
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 13/203 (6%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
L+L G GTR+R T PK L A + M+ H + A+ + +++ + + + +
Sbjct: 10 LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 66
Query: 64 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
+ E LG I + + PLGT + L DD V + D ++ A++
Sbjct: 67 VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 126
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 175
I H+A +++ +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 127 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 186
Query: 176 LNPAVLDRI--ELRPTSIEKEVF 196
+ A L L + ++E++
Sbjct: 187 FDIAALRSALSRLSSNNAQQELY 209
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 259 QIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 313
QIG C++GP DVAVG G V ++ H SSS IG + VG
Sbjct: 297 QIGGRCVVGPDTTLTDVAVGDGASV----------------VRTHG--SSSSIGDGAAVG 338
Query: 314 QWARVENMTILGED 327
+ + T LG D
Sbjct: 339 PFTYLRPGTALGAD 352
>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate
Uridyltransferase (Glmu) From Mycobacterium Tuberculosis
In A Cubic Space Group
Length = 503
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 13/203 (6%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
L+L G GTR+R T PK L A + M+ H + A+ + +++ + + + +
Sbjct: 18 LVLAAGPGTRMRSDT---PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPL 74
Query: 64 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEM 121
+ E LG I + + PLGT + L DD V + D ++ A++
Sbjct: 75 VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 134
Query: 122 IEFHKAHGGEASIM---VDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIYL 175
I H+A +++ +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 135 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVYA 194
Query: 176 LNPAVLDRI--ELRPTSIEKEVF 196
+ A L L + ++E++
Sbjct: 195 FDIAALRSALSRLSSNNAQQELY 217
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 259 QIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 313
QIG C++GP DVAVG G V ++ H SSS IG + VG
Sbjct: 305 QIGGRCVVGPDTTLTDVAVGDGASV----------------VRTHG--SSSSIGDGAAVG 346
Query: 314 QWARVENMTILGED 327
+ + T LG D
Sbjct: 347 PFTYLRPGTALGAD 360
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 93/193 (48%), Gaps = 7/193 (3%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V + L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 121
L ++ G+ + + P G A + + + D + VL ++ + ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IE--FHKAHGGEA-SIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178
+E +K G + V++P +YGVV +++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQA-GTAVSLEEKPLQPKSNYAVTGLYFYDN 181
Query: 179 AVLDRIE-LRPTS 190
+V++ + L+P++
Sbjct: 182 SVVEMAKNLKPSA 194
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 135/358 (37%), Gaps = 47/358 (13%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M +IL G GTR+ +PK L A KPM+ H I+A +G V L + E
Sbjct: 6 MSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGE-- 60
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPF 118
LK+ A + + + E LGT + A DD E +L DV IS
Sbjct: 61 --LLKKTLADPSLNWVL--QAEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTL 114
Query: 119 AEMIEFHKAHG-GEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG----NKINAGI 173
++ G G ++ +D PS YG +V E G V VE N+IN GI
Sbjct: 115 QRLLAAKPEGGIGLLTVKLDNPSGYGRIVRE--NGDVVGIVEHKDASDAQREINEINTGI 172
Query: 174 YLLNPAVLDR----IELRPTSIEKEVFPKIAL---EGKLFAMVLPGFWMDIGQPRDYITG 226
+ N L R ++ E + IAL +GK A V P ++ + +
Sbjct: 173 LVANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQL 232
Query: 227 XXXXXXXXXXXXXXXXATGANIV-------------GNVLVHESAQIGEGCLI-GPDVAV 272
G ++ G + ++ I EG +I G V +
Sbjct: 233 SALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRI 292
Query: 273 GPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
G GCV L C + I + + + + + TVG +AR+ L E HV
Sbjct: 293 GTGCV------LKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHV 344
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 134/355 (37%), Gaps = 47/355 (13%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
+IL G GTR+ +PK L A KPM+ H I+A +G V L + E
Sbjct: 12 VILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGE----L 64
Query: 64 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEM 121
LK+ A + + + E LGT + A DD E +L DV IS +
Sbjct: 65 LKKTLADPSLNWVL--QAEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTLQRL 120
Query: 122 IEFHKAHG-GEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG----NKINAGIYLL 176
+ G G ++ +D PS YG +V E G V VE N+IN GI +
Sbjct: 121 LAAKPEGGIGLLTVKLDNPSGYGRIVRE--NGDVVGIVEHKDASDAQREINEINTGILVA 178
Query: 177 NPAVLDR----IELRPTSIEKEVFPKIAL---EGKLFAMVLPGFWMDIGQPRDYITGXXX 229
N L R ++ E + IAL +GK A V P ++ + +
Sbjct: 179 NGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSAL 238
Query: 230 XXXXXXXXXXXXXATGANIV-------------GNVLVHESAQIGEGCLI-GPDVAVGPG 275
G ++ G + ++ I EG +I G V +G G
Sbjct: 239 ERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTG 298
Query: 276 CVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
CV L C + I + + + + + TVG +AR+ L E HV
Sbjct: 299 CV------LKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHV 347
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate
Length = 297
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 34/215 (15%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM- 60
KA+ V G GTR P T ++PK ++ ++P+I + ++ G+ +++ +
Sbjct: 16 KAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALE 75
Query: 61 --LNFLKEFEAKLGIK----------------IICSQETEPLGTAGPLALARDKLIDDTG 102
+ E EA + + I ++ EP+G + ARD + D
Sbjct: 76 DHFDIAYELEATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGD--- 132
Query: 103 EPFFV-LNSDVISEYP--FAEMIEFHKAHGGE----ASIMVDEPSKYGVVVMEESTG--- 152
EPF V L D + P +M++ + GG + D+ +YG++ G
Sbjct: 133 EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGGNLICAEEVPDDQTHRYGIITPGTQDGVLT 192
Query: 153 KVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRIE 185
+V+ VEKP N G Y+L P V+ +E
Sbjct: 193 EVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILE 227
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 105/257 (40%), Gaps = 58/257 (22%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
KA+I V G GTR+ P T ++PK ++ +KP+I + + A G+TE+VL + +
Sbjct: 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIE 69
Query: 62 NFLK---EFEAKLGIKI----------ICSQETEPLGTAGPLA-------LARDKLIDDT 101
N E EA L ++ IC + LA L ++ D
Sbjct: 70 NHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD- 128
Query: 102 GEPFFVLNSDVI--------SEYPFAEMIEFHKAHGGEASIMVD---EPSKYGVVVME-- 148
EP V+ DVI S+ AEMI G + IMV+ + + YGVV +
Sbjct: 129 -EPVAVILPDVILDEYESDLSQDNLAEMIRRFD-ETGHSQIMVEPVADVTAYGVVDCKGV 186
Query: 149 -----ESTGKVEKFVEKPKLFVG--NKINAGIYLLN-----------PAVLDRIELRPT- 189
ES V VEKPK V N G Y+L+ P D I+L
Sbjct: 187 ELAPGESVPMV-GVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAI 245
Query: 190 --SIEKEVFPKIALEGK 204
IEKE ++GK
Sbjct: 246 DMLIEKETVEAYHMKGK 262
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 144/356 (40%), Gaps = 43/356 (12%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ A+IL G GTR+ +PK L A KPM+ H I+ +G + L + ++M
Sbjct: 6 LSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLM 62
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPF 118
L + + +TE LGTA + A D+ E VL D +I++
Sbjct: 63 RTHLANEQVNWVL------QTEQLGTAHAVQQAAPFFKDN--ENIVVLYGDAPLITKETL 114
Query: 119 AEMIEFHKAHG-GEASIMVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGN----KINAGI 173
++IE +G ++ +D P+ YG ++ E G V VE+ ++N G+
Sbjct: 115 EKLIEAKPENGIALLTVNLDNPTGYGRIIRE--NGNVVAIVEQKDANAEQLNIKEVNTGV 172
Query: 174 YLLNPAV----LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXX 229
+ + A L R+ E + IAL + V+ D+ + + G
Sbjct: 173 MVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVME----VEGANN 228
Query: 230 XXXXXXXXXXXXXATGAN-IVGNVLVHESAQIG-EGCL-IGPDVAVGPGCVVESGVRL-S 285
+ ++ V++++ A+ G L G DV + ++E V+L
Sbjct: 229 RLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGD 288
Query: 286 RCTVMRG-----------VRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 330
R + G V IK ++ + SI+G + +G ++R+ L + HV
Sbjct: 289 RVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHV 344
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 248 IVGNVLVHESAQIGEGC-----LIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS 302
I GNV + + +IG GC +IG DV + P V+E + + + R++ A ++
Sbjct: 280 IEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELA 339
Query: 303 SSI-IG-----WHSTVGQWARVENMTILGE 326
+ +G STVG+ ++V ++T +G+
Sbjct: 340 AETHVGNFVEIKKSTVGKGSKVNHLTYVGD 369
>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|B Chain B, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|C Chain C, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|D Chain D, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUK|A Chain A, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|B Chain B, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|C Chain C, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|D Chain D, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
Length = 281
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 40/261 (15%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVT-------------E 48
K L G+GTR P+T ++PK ++ +KP+I + +E G E
Sbjct: 4 KCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLE 63
Query: 49 VVLAINYQPEVMLNFLKEFEAKLGIKIICSQ------ETEPLGTAGPLALARDKLIDDTG 102
+Y+ E + + A I+ I + + + G L + LI +
Sbjct: 64 DYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGN-- 121
Query: 103 EPFFVLNSD---VISEYP--FAEMIEFHKAHGGE----ASIMVDEPSKYGVVV---MEES 150
EPF V+ +D + ++P +M ++ + + ++E SKYGV+ +EE
Sbjct: 122 EPFAVILADDLCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEWLEEG 181
Query: 151 TGKVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRI-ELRPTSIEK----EVFPKIALEG 203
+++ VEKP N G Y+L P + + + E +P + + A
Sbjct: 182 VYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQAKRK 241
Query: 204 KLFAMVLPGFWMDIGQPRDYI 224
++ A G D G YI
Sbjct: 242 RIIAYQFKGKRYDCGSVEGYI 262
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 139/367 (37%), Gaps = 50/367 (13%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILH-QIEALKAVGVTEVVLAINYQPEVML 61
A +L GG G+RL+ LT KP V F K I+ + G+ + +A Y+ ++
Sbjct: 15 AYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLI 74
Query: 62 NFLK---EF---EAKLGIKII-CSQ---ETEPL-GTAGPLALARDKLIDDTGEPFFVLNS 110
L+ +F E I+ SQ ET+ GTA + D + E +L
Sbjct: 75 RHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYXVILAG 134
Query: 111 DVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGKVEKFVEKPKL-- 163
D I + + ++ H G + +I E + +GV + E ++ F+EKP
Sbjct: 135 DHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEATGFGVXHVNEKD-EIIDFIEKPADPP 193
Query: 164 -FVGNK----INAGIYLLNPAVLD----RIELRPTSIE---KEVFPKIALEGKLFAMVLP 211
GN+ + GIY+ + L R PTS K++ P I GK A
Sbjct: 194 GIPGNEGFALASXGIYVFHTKFLXEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFA 253
Query: 212 G-----------FWMDIGQPRDYITGXXXXXXXXXXXXXXXXA----TGANIVGNVLVHE 256
+W D+G Y + T A I
Sbjct: 254 DSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVH 313
Query: 257 SAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA 316
+ G + V C++ SG L+R + GVR ++ + ++++ +G+ A
Sbjct: 314 DDEDRRGSAVSS--VVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHA 370
Query: 317 RVENMTI 323
++ N+ I
Sbjct: 371 QLSNVVI 377
>pdb|2XME|A Chain A, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|B Chain B, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|C Chain C, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|D Chain D, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|E Chain E, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|F Chain F, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|G Chain G, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|H Chain H, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|I Chain I, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|J Chain J, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|K Chain K, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|L Chain L, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|A Chain A, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|B Chain B, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|C Chain C, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|D Chain D, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|E Chain E, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|F Chain F, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
Length = 232
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 102/232 (43%), Gaps = 36/232 (15%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKA+IL G GTRL VPKPLV +IL ++ L + V+E ++ + + +
Sbjct: 19 MKAVILAAGLGTRLG----GVPKPLVRVGGCEIILRTMKLL-SPHVSEFIIVASRYADDI 73
Query: 61 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAE 120
FLK + KI+ E G L +A++ + D F + D + F E
Sbjct: 74 DAFLK--DKGFNYKIVRHDRPEK-GNGYSLLVAKNHVED----RFILTMGDHVYSQQFIE 126
Query: 121 MIEFHKAHGGEASIMVDEPSKYGVVVMEEST------GKVEKFVEKPKLFVGNKINAGIY 174
KA GE I EP V + E+T G+V K + + F + ++ G +
Sbjct: 127 -----KAVRGEGVIADREPR---FVDIGEATKIRVEDGRVAKIGKDLREF--DCVDTGFF 176
Query: 175 LLNPAVLDRIE-LRPTSIEKEVFP--KIALEGKLFAMVLPG-FWMDIGQPRD 222
+L+ ++ + E LR ++E P +I +L + G WMD+ D
Sbjct: 177 VLDDSIFEHAEKLR----DREEIPLSEIVKLARLPVTYVDGELWMDVDTKED 224
>pdb|2PA4|A Chain A, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|B Chain B, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|C Chain C, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|D Chain D, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
Length = 323
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 36/211 (17%)
Query: 8 GGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPE---VMLNFL 64
G GTR P T +VPK L+ + P I ++ A +A + LAI P V+ +F
Sbjct: 20 AGLGTRFLPATKTVPKELLPVVDTPGI--ELIAAEAAELGATRLAIITAPNKAGVLAHFE 77
Query: 65 KEFE-------------------AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF 105
+ E A IK + + +PLG + LA L DD
Sbjct: 78 RSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVA 137
Query: 106 FVLNSDVISEYPFAE-MIEFHKAHGGEASIMVD----EPSKYGVVVMEEST-----GKVE 155
+L D++ E M + GG V+ + SKYG+ +E T KV+
Sbjct: 138 VMLPDDLVLPTGVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVK 197
Query: 156 KFVEKPKL-FVGNKINA-GIYLLNPAVLDRI 184
VEKP + +++ A G YLL+ + D +
Sbjct: 198 GMVEKPAIEDAPSRLAATGRYLLDRKIFDAL 228
>pdb|2X5S|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Apo State.
pdb|2X5S|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Apo State.
pdb|2X5Z|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gdp-Mannose.
pdb|2X5Z|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gdp-Mannose.
pdb|2X60|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gtp.
pdb|2X60|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gtp.
pdb|2X65|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Mannose-1-Phosphate.
pdb|2X65|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Mannose-1-Phosphate
Length = 336
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 79/202 (39%), Gaps = 31/202 (15%)
Query: 1 MKALILVGGFGTRLRPL-TLSVPKPLVE-FANKPMILHQIEALKAVGVTEVVLAINYQPE 58
MKALIL GG G R PL T PK ++ F NK ++ E + + V+ + ++
Sbjct: 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDY 61
Query: 59 VMLNFLKEFEAKLGIKIICSQETEPL-GTAGPLALARDKLIDDTGEPFFVLNSDVISEYP 117
V KE II EP+ P KL DD EP VL +D +
Sbjct: 62 VERT-KKELPELPDENIIA----EPMKKNTAPACFIGTKLADD-DEPVLVLPAD----HR 111
Query: 118 FAEMIEFHKA--HGGEASIMVDEPSKYGVVVMEESTG---------------KVEKFVEK 160
+ +F K +A D +G+V TG KV +F EK
Sbjct: 112 IPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEELEEGVHKVAQFREK 171
Query: 161 PKLFVGNK-INAGIYLLNPAVL 181
P L K + +G +L N +
Sbjct: 172 PDLETAKKFVESGRFLWNSGMF 193
>pdb|2CU2|A Chain A, Crystal Structure Of Mannose-1-Phosphate
Geranyltransferase From Thermus Thermophilus Hb8
Length = 337
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 86/202 (42%), Gaps = 32/202 (15%)
Query: 3 ALILVGGFGTRLRPLTL-SVPKPLVE-FANKPMILHQIEALKAVGVTE-VVLAINYQPEV 59
AL++ GG G RL PL+ PKP + F K ++ +E L + E +LA+ E
Sbjct: 5 ALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEA 64
Query: 60 MLNFLKEFEAKLGIKIICSQETEPLG--TAGPLALARDKLIDDTGEPFFVLNSD--VISE 115
+ + GI+++ EPLG TAG + L + + + E VL +D V +
Sbjct: 65 VARPYAD-----GIRLLL----EPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDD 115
Query: 116 YPFAEMIE--FHKAHGGEASIMVDEPSK----YGVVVMEESTG---KVEKFVEKPK---- 162
+ E + A G + P++ YG + + G + E FVEKP
Sbjct: 116 EAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEA 175
Query: 163 ---LFVGNKINAGIYLLNPAVL 181
+ G N G++ PA +
Sbjct: 176 LEYIRKGYVWNGGVFAFAPATM 197
>pdb|2JF2|A Chain A, Nucleotide Substrate Binding By Udp-n-acetylglucosamine
Acyltransferase
Length = 264
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 245 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 304
G+ I + VH +A + EG IG + +GP C+V V + TV++ S
Sbjct: 1 GSMIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLK----------SHV 50
Query: 305 IIGWHSTVGQWARVENMTILGE 326
++ H+ +G+ + +GE
Sbjct: 51 VVNGHTKIGRDNEIYQFASIGE 72
>pdb|2AQ9|A Chain A, Structure Of E. Coli Lpxa With A Bound Peptide That Is
Competitive With Acyl-Acp
pdb|2JF3|A Chain A, Nucleotide Substrate Binding By Udp-N-Acetylglucosamine
Acyltransferase
pdb|1LXA|A Chain A, Udp N-Acetylglucosamine Acyltransferase
pdb|2QIA|A Chain A, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
pdb|2QIV|X Chain X, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
Length = 262
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHS 310
+ VH +A + EG IG + +GP C+V V + TV++ S ++ H+
Sbjct: 5 SAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLK----------SHVVVNGHT 54
Query: 311 TVGQWARVENMTILGE 326
+G+ + +GE
Sbjct: 55 KIGRDNEIYQFASIGE 70
>pdb|4E6T|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|B Chain B, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|C Chain C, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
Length = 294
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 245 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 304
GA + L+H +A I +I DV +GP C++ V T+ G ++ H
Sbjct: 30 GAGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQV-----TIGAGTKLHSHV----- 79
Query: 305 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 338
++G + +GQ + +GE VC ++ G
Sbjct: 80 VVGGFTRIGQNNEIFQFASVGE---VCQDLKYKG 110
>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|2OI5|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI5|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI6|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI6|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI7|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
pdb|2OI7|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
Length = 456
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 248 IVGNVLVHESAQIGEGC-----LIGPDVAVGPGCVVESGVRLSRCTV-----MR-GVRIK 296
I GNV + +IG GC +IG D + P VVE + CT+ +R G +
Sbjct: 280 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELL 339
Query: 297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 341
+ A + + + + +G+ ++ ++T LG D + D + G +
Sbjct: 340 EGAHVGNFVEMKKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTI 383
>pdb|3K8D|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|B Chain B, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|C Chain C, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|D Chain D, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8E|C Chain C, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|D Chain D, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|B Chain B, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
Length = 264
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 23 KPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ 56
KPLV+ KPMI+H +E + G +++A +++
Sbjct: 35 KPLVDINGKPMIVHVLERARESGAERIIVATDHE 68
>pdb|4E6U|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.4a
Resolution (P63 Form)
Length = 265
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 245 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 304
GA + L+H +A I +I DV +GP C++ V T+ G ++ H
Sbjct: 1 GAGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQV-----TIGAGTKLHSHV----- 50
Query: 305 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 338
++G + +GQ + +GE VC ++ G
Sbjct: 51 VVGGFTRIGQNNEIFQFASVGE---VCQDLKYKG 81
>pdb|2VSH|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSH|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
Length = 236
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEAL 41
A IL GG GTR+ L PK +E ++P+++H IE
Sbjct: 5 AGILAGGTGTRMGISNL--PKQFLELGDRPILIHTIEKF 41
>pdb|3F1C|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
pdb|3F1C|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
Length = 246
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEAL 41
A IL GG GTR+ +S+PK + KP+I+H +E
Sbjct: 6 AQILAGGKGTRMG--NVSMPKQFLPLNGKPIIVHTVEKF 42
>pdb|4AA7|A Chain A, E.Coli Glmu In Complex With An Antibacterial Inhibitor
pdb|4AA7|B Chain B, E.Coli Glmu In Complex With An Antibacterial Inhibitor
Length = 231
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 248 IVGNVLVHESAQIGEGC-----LIGPDVAVGPGCVVESGVRLSRCTV-----MR-GVRIK 296
I GNV + +IG GC +IG D + P VVE + CT+ +R G +
Sbjct: 55 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELL 114
Query: 297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 341
+ A + + + + +G+ ++ ++T LG D + D + G +
Sbjct: 115 EGAHVGNFVEMKKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTI 158
>pdb|3TWD|A Chain A, Glmuc1 In Complex With An Antibacterial Inhibitor
pdb|3TWD|B Chain B, Glmuc1 In Complex With An Antibacterial Inhibitor
Length = 222
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 248 IVGNVLVHESAQIGEGC-----LIGPDVAVGPGCVVESGVRLSRCTV-----MR-GVRIK 296
I GNV + +IG GC +IG D + P VVE + CT+ +R G +
Sbjct: 49 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELL 108
Query: 297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 341
+ A + + + + +G+ ++ ++T LG D + D + G +
Sbjct: 109 EGAHVGNFVEMKKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTI 152
>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis
Udp-N-Acetylglucosamine Acyltransferase
Length = 305
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 252 VLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL 284
VL+H SA + +IG V+VGP C + S V+L
Sbjct: 8 VLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKL 40
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 68/370 (18%), Positives = 138/370 (37%), Gaps = 75/370 (20%)
Query: 12 TRLRPLTLSVPKPLVEF-ANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFL-KEFEA 69
TRL PLT KP V AN +I + ++++ + + + L + + +
Sbjct: 32 TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS 91
Query: 70 KLG-------IKIICSQET--EPLGTAGPLALARDKLI---DDTGEPFFVLNSDVISEYP 117
+G ++++ +Q++ P G R L + T + +L D +
Sbjct: 92 NMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMD 151
Query: 118 FAEMIEFHKAHGGE---ASIMVDE--PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINA- 171
+ + I+ H+ + A++ +DE + +G++ ++E G++ +F EKP+ G ++ A
Sbjct: 152 YEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE-GRIIEFAEKPQ---GEQLQAM 207
Query: 172 -----------------------GIYLLNPAVLDRIELR-----PTSIEKEVFP-KIALE 202
GIY+++ V+ + LR EV P +L
Sbjct: 208 KVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNL-LRDKFPGANDFGSEVIPGATSLG 266
Query: 203 GKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXXXXXXXATGANIVGNVLVHESAQIGE 262
++ A + G+W DIG + + + S +
Sbjct: 267 MRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDA 326
Query: 263 GCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT 322
D +G GCV+ K+ I S++G S + + A +E+
Sbjct: 327 DVT---DSVIGEGCVI------------------KNCKIHHSVVGLRSCISEGAIIEDSL 365
Query: 323 ILGEDVHVCD 332
++G D + D
Sbjct: 366 LMGADYYETD 375
>pdb|3R0S|A Chain A, Udp-N-Acetylglucosamine Acyltransferase From Campylobacter
Jejuni
Length = 266
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMR-GVRIKKHACISSSIIGWHSTV 312
+H SA I EG +G DV + V ++ V++ G RI +S + IG HS V
Sbjct: 7 IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARI-----LSDTTIGDHSRV 61
Query: 313 GQWA 316
+A
Sbjct: 62 FSYA 65
>pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FWY|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FXJ|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
Length = 331
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 248 IVGNVLVHESAQIGEGC-----LIGPDVAVGPGCVVESGVRLSRCTV 289
I GNV + +IG GC +IG D + P VVE + CT+
Sbjct: 280 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTI 326
>pdb|1VH1|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|B Chain B, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|C Chain C, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|D Chain D, Crystal Structure Of Cmp-Kdo Synthetase
Length = 256
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 23 KPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ 56
KPLV+ KP I+H +E + G +++A +++
Sbjct: 19 KPLVDINGKPXIVHVLERARESGAERIIVATDHE 52
>pdb|3P47|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Cysteine
Length = 315
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 244 TGANIVGNVLVHESAQIGEGCLIGPDV 270
TGA ++GN++V +IG C I DV
Sbjct: 236 TGAKVLGNIIVGSHVRIGANCWIDRDV 262
>pdb|3Q1X|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Serine
Length = 313
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 244 TGANIVGNVLVHESAQIGEGCLIGPDV 270
TGA ++GN++V +IG C I DV
Sbjct: 234 TGAKVLGNIIVGSHVRIGANCWIDRDV 260
>pdb|3P1B|A Chain A, Crystal Structure Of The Native Serine Acetyltransferase 1
From Entamoeba Histolytica
Length = 314
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 244 TGANIVGNVLVHESAQIGEGCLIGPDV 270
TGA ++GN++V +IG C I DV
Sbjct: 235 TGAKVLGNIIVGSHVRIGANCWIDRDV 261
>pdb|1H6J|A Chain A, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H6J|B Chain B, The Three-Dimensional Structure Of Capsule-Specific
Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid Synthetase From
Escherichia Coli
pdb|1H7E|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7E|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Apo-Enzyme
pdb|1H7F|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7F|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cmp Complex
pdb|1H7G|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7G|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Ctp Mg2+ Complex
pdb|1H7H|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7H|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Cdp Complex
pdb|1H7T|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1H7T|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase And Of Its Complexes With Substrates And
Substrate Analogues, Here Complex With Cmp-Neuac,
Cmp-Neuac Complex
pdb|1GQ9|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQ9|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Ctp At 100k
pdb|1GQC|A Chain A, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
pdb|1GQC|B Chain B, The Structure Of Cmp:2-Keto-3-Deoxy-Manno-Octonic Acid
Synthetase Complexed With Cmp-Kdo At 100k
Length = 245
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 23 KPLVEFANKPMILHQIE-ALKAVGVTEVVLAIN 54
KPL++ KPMI H E AL+ GV EV +A +
Sbjct: 19 KPLLDIVGKPMIQHVYERALQVAGVAEVWVATD 51
>pdb|3JTJ|A Chain A, 3-Deoxy-Manno-Octulosonate Cytidylyltransferase From
Yersinia Pestis
Length = 253
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 23 KPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
KPL + A KP ++H E A G V++A ++ P+V+
Sbjct: 22 KPLADIAGKPXVVHVXERALASGADRVIVATDH-PDVV 58
>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|B Chain B, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|C Chain C, Crystal Structure Of Lpxd From Escherichia Coli
Length = 341
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 246 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVV------ESGVRL-SRCTVMRGVRIKKH 298
A + NV + +A I G +G +V +G GC V +G RL + T+ ++I ++
Sbjct: 110 AKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQN 169
Query: 299 ACISSSII------GWHSTVGQWARVENM--TILGEDVHV 330
I S + G+ + G W ++ + I+G+ V +
Sbjct: 170 CLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEI 209
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 257 SAQIGEGCLIGPDVAVGPGCVVESGVRL-------SRCTVMRGVRIKKHACISSSIIGWH 309
SA I +G +V++G V+ESGV L + C V + +I + + +++ +H
Sbjct: 103 SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYH 162
Query: 310 S-TVGQWARVENMTILGED 327
+GQ +++ T++G D
Sbjct: 163 EIQIGQNCLIQSGTVVGAD 181
>pdb|3KWD|A Chain A, Inactive Truncation Of The Beta-Carboxysomal
Gamma-Carbonic Anhydrase, Ccmm, Form 1
pdb|3KWE|A Chain A, Inactive Truncation Of The Beta-Carboxysomal
Gamma-Carbonic Anhydrase, Ccmm, Form 2
Length = 213
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 253 LVHESAQIGEGCLIG-----PDVAVGPGCVV 278
L+H A IG+GC IG + VG GCVV
Sbjct: 125 LIHGPAYIGDGCFIGFRSTVFNARVGAGCVV 155
>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A
Resolution
Length = 372
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 313
+H +A + + P +VG V+ESG R+ GV I H C +IG S +G
Sbjct: 122 IHPTAIVAADAEVDPSASVGAYAVIESGARIG-----AGVSIGAH-C----VIGARSVIG 171
Query: 314 QWARVENMTILGEDVHVCDEIYSNGGVVL 342
+ + L DV + + G V+
Sbjct: 172 EGGWLAPRVTLYHDVTIGARVSIQSGAVI 200
>pdb|2XWL|A Chain A, Crystal Structure Of Ispd From Mycobacterium Smegmatis
In Complex With Ctp And Mg
pdb|2XWL|B Chain B, Crystal Structure Of Ispd From Mycobacterium Smegmatis
In Complex With Ctp And Mg
pdb|2XWM|A Chain A, Crystal Structure Of Ispd From Mycobacterium Smegmatis
In Complex With Cmp
pdb|2XWM|B Chain B, Crystal Structure Of Ispd From Mycobacterium Smegmatis
In Complex With Cmp
Length = 223
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTE-VVLAI 53
A++ G G RLR PK V P++ H + L+A GV + +V+A+
Sbjct: 5 AVVPAAGSGERLR---AGRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAV 53
>pdb|3KWC|A Chain A, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|B Chain B, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|C Chain C, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|D Chain D, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|E Chain E, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|F Chain F, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
Length = 229
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 253 LVHESAQIGEGCLIG-----PDVAVGPGCVV 278
L+H A IG+GC IG + VG GCVV
Sbjct: 125 LIHGPAYIGDGCFIGFRSTVFNARVGAGCVV 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,239,951
Number of Sequences: 62578
Number of extensions: 407109
Number of successful extensions: 1112
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 113
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)