Query 018327
Match_columns 358
No_of_seqs 193 out of 2504
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 08:04:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1322 GDP-mannose pyrophosph 100.0 6E-65 1.3E-69 431.4 29.9 358 1-358 10-371 (371)
2 COG1208 GCD1 Nucleoside-diphos 100.0 3E-57 6.4E-62 412.9 40.4 338 1-350 2-354 (358)
3 PRK05293 glgC glucose-1-phosph 100.0 7.6E-53 1.6E-57 391.7 35.3 342 1-350 4-376 (380)
4 KOG1460 GDP-mannose pyrophosph 100.0 1.3E-53 2.9E-58 356.5 24.2 356 2-358 4-407 (407)
5 COG0448 GlgC ADP-glucose pyrop 100.0 1.7E-52 3.7E-57 369.0 28.2 331 2-339 7-363 (393)
6 PRK00844 glgC glucose-1-phosph 100.0 2.2E-51 4.8E-56 383.7 33.7 333 1-338 6-382 (407)
7 TIGR01208 rmlA_long glucose-1- 100.0 5E-50 1.1E-54 369.0 37.9 336 2-347 1-351 (353)
8 PRK02862 glgC glucose-1-phosph 100.0 6.9E-50 1.5E-54 375.2 35.7 316 1-320 4-394 (429)
9 PRK00725 glgC glucose-1-phosph 100.0 1.5E-49 3.3E-54 372.4 34.6 333 1-339 16-395 (425)
10 TIGR02092 glgD glucose-1-phosp 100.0 9.9E-50 2.1E-54 369.2 29.4 336 1-344 3-361 (369)
11 PLN02241 glucose-1-phosphate a 100.0 5.3E-49 1.2E-53 370.2 33.9 317 1-321 4-402 (436)
12 TIGR02091 glgC glucose-1-phosp 100.0 9.3E-49 2E-53 362.0 33.4 330 3-338 1-361 (361)
13 COG1207 GlmU N-acetylglucosami 100.0 1.4E-46 3.1E-51 331.0 30.8 340 1-349 3-366 (460)
14 PRK14355 glmU bifunctional N-a 100.0 6.9E-46 1.5E-50 352.8 36.0 330 1-340 4-357 (459)
15 PRK14352 glmU bifunctional N-a 100.0 2.1E-44 4.5E-49 344.3 36.3 337 1-346 5-365 (482)
16 KOG1462 Translation initiation 100.0 4.8E-46 1E-50 322.2 21.3 338 1-344 10-425 (433)
17 PRK14358 glmU bifunctional N-a 100.0 1.9E-44 4.2E-49 343.1 34.4 331 1-342 8-361 (481)
18 PRK14356 glmU bifunctional N-a 100.0 3.5E-44 7.5E-49 341.6 35.1 337 1-350 6-368 (456)
19 TIGR01173 glmU UDP-N-acetylglu 100.0 1.3E-43 2.8E-48 337.7 34.3 330 1-344 1-354 (451)
20 KOG1461 Translation initiation 100.0 5.8E-44 1.3E-48 326.6 28.8 338 1-341 25-423 (673)
21 COG1209 RfbA dTDP-glucose pyro 100.0 4.5E-44 9.8E-49 299.0 23.4 227 1-232 1-237 (286)
22 PRK14353 glmU bifunctional N-a 100.0 1.8E-42 3.9E-47 328.9 36.3 346 1-357 6-423 (446)
23 PRK14359 glmU bifunctional N-a 100.0 3.2E-42 6.9E-47 326.0 36.7 341 1-357 3-410 (430)
24 PRK09451 glmU bifunctional N-a 100.0 3.2E-42 7E-47 327.6 30.8 317 1-336 6-350 (456)
25 PRK14354 glmU bifunctional N-a 100.0 1.1E-41 2.5E-46 324.6 33.7 334 1-347 3-360 (458)
26 PRK14357 glmU bifunctional N-a 100.0 8.8E-41 1.9E-45 317.5 32.9 320 1-340 1-343 (448)
27 PRK14360 glmU bifunctional N-a 100.0 4.6E-40 9.9E-45 312.9 34.5 334 1-348 2-358 (450)
28 cd06425 M1P_guanylylT_B_like_N 100.0 2.5E-40 5.5E-45 287.4 27.5 230 1-231 1-233 (233)
29 TIGR01105 galF UTP-glucose-1-p 100.0 1.2E-38 2.6E-43 283.1 26.5 226 1-230 4-276 (297)
30 cd06428 M1P_guanylylT_A_like_N 100.0 2E-38 4.3E-43 279.3 24.7 227 3-229 1-256 (257)
31 PF00483 NTP_transferase: Nucl 100.0 1.6E-37 3.4E-42 272.7 23.6 229 2-232 1-247 (248)
32 PRK10122 GalU regulator GalF; 100.0 5.6E-37 1.2E-41 273.3 26.6 226 1-230 4-276 (297)
33 cd02538 G1P_TT_short G1P_TT_sh 100.0 9.6E-37 2.1E-41 266.1 25.6 225 1-230 1-237 (240)
34 TIGR02623 G1P_cyt_trans glucos 100.0 1.3E-36 2.8E-41 266.6 26.4 225 2-232 1-246 (254)
35 PRK15480 glucose-1-phosphate t 100.0 1.9E-36 4.1E-41 268.4 25.9 226 1-231 4-241 (292)
36 TIGR01207 rmlA glucose-1-phosp 100.0 5.6E-36 1.2E-40 265.2 24.8 225 2-231 1-237 (286)
37 cd04189 G1P_TT_long G1P_TT_lon 100.0 9.7E-35 2.1E-39 253.1 26.9 226 1-232 1-235 (236)
38 cd06422 NTP_transferase_like_1 100.0 5E-35 1.1E-39 252.2 24.3 215 2-226 1-221 (221)
39 cd02524 G1P_cytidylyltransfera 100.0 9.9E-35 2.1E-39 255.1 26.3 226 3-232 1-247 (253)
40 cd02541 UGPase_prokaryotic Pro 100.0 7.6E-35 1.7E-39 258.2 25.1 228 1-231 1-265 (267)
41 PRK13389 UTP--glucose-1-phosph 100.0 2E-34 4.4E-39 257.2 26.3 226 1-230 9-279 (302)
42 cd06915 NTP_transferase_WcbM_l 100.0 4.1E-34 8.8E-39 247.0 25.5 219 3-226 1-222 (223)
43 TIGR01099 galU UTP-glucose-1-p 100.0 7.6E-34 1.7E-38 250.9 23.9 223 1-226 1-260 (260)
44 cd06426 NTP_transferase_like_2 100.0 9.4E-33 2E-37 238.0 24.9 216 3-227 1-220 (220)
45 cd04181 NTP_transferase NTP_tr 100.0 8.1E-33 1.8E-37 237.9 24.1 211 3-218 1-217 (217)
46 COG1210 GalU UDP-glucose pyrop 100.0 1.4E-31 3E-36 224.2 22.6 229 1-232 5-271 (291)
47 cd04197 eIF-2B_epsilon_N The N 100.0 1.2E-29 2.5E-34 217.8 20.1 176 1-181 1-217 (217)
48 cd02523 PC_cytidylyltransferas 100.0 4.4E-29 9.6E-34 216.3 20.5 211 3-226 1-228 (229)
49 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 1.2E-28 2.6E-33 214.0 21.9 213 3-223 1-230 (231)
50 cd02508 ADP_Glucose_PP ADP-glu 100.0 8.9E-29 1.9E-33 209.7 16.3 183 3-217 1-200 (200)
51 cd02507 eIF-2B_gamma_N_like Th 99.9 1.3E-26 2.9E-31 198.4 17.5 177 1-181 1-216 (216)
52 cd04198 eIF-2B_gamma_N The N-t 99.9 3.1E-26 6.6E-31 196.0 17.1 177 1-181 1-214 (214)
53 COG1213 Predicted sugar nucleo 99.9 1.1E-25 2.4E-30 185.5 18.3 221 1-236 4-234 (239)
54 cd02540 GT2_GlmU_N_bac N-termi 99.9 2.1E-25 4.6E-30 193.3 20.2 209 3-222 1-228 (229)
55 cd02509 GDP-M1P_Guanylyltransf 99.9 2.3E-25 5.1E-30 197.0 16.7 218 1-222 1-273 (274)
56 cd02517 CMP-KDO-Synthetase CMP 99.9 2.8E-24 6E-29 187.5 21.1 213 1-228 2-238 (239)
57 PRK05450 3-deoxy-manno-octulos 99.9 6.5E-24 1.4E-28 185.9 22.4 214 2-230 4-244 (245)
58 TIGR01479 GMP_PMI mannose-1-ph 99.9 1.1E-23 2.3E-28 199.3 19.8 223 1-227 1-281 (468)
59 PRK13368 3-deoxy-manno-octulos 99.9 3.4E-22 7.4E-27 174.2 21.9 208 2-228 4-236 (238)
60 COG4750 LicC CTP:phosphocholin 99.9 4.2E-21 9.2E-26 151.7 14.4 214 1-230 1-225 (231)
61 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.8 2.1E-20 4.6E-25 159.8 11.2 140 193-338 31-195 (231)
62 PLN02917 CMP-KDO synthetase 99.8 7.3E-18 1.6E-22 149.9 21.7 213 2-231 49-288 (293)
63 COG0836 {ManC} Mannose-1-phosp 99.8 3.5E-18 7.5E-23 147.2 17.3 225 1-227 2-282 (333)
64 PRK15460 cpsB mannose-1-phosph 99.8 6.1E-18 1.3E-22 158.6 16.8 224 1-227 6-290 (478)
65 TIGR00454 conserved hypothetic 99.8 2.5E-17 5.4E-22 136.5 16.1 179 1-227 1-181 (183)
66 TIGR00466 kdsB 3-deoxy-D-manno 99.7 3.1E-16 6.7E-21 135.9 21.1 206 3-223 2-237 (238)
67 COG2266 GTP:adenosylcobinamide 99.7 1.2E-15 2.5E-20 120.4 17.6 166 1-231 1-168 (177)
68 TIGR00965 dapD 2,3,4,5-tetrahy 99.7 1.7E-16 3.7E-21 135.8 12.2 119 239-358 100-232 (269)
69 TIGR00453 ispD 2-C-methyl-D-er 99.7 1.9E-15 4.1E-20 129.8 16.5 207 2-228 1-215 (217)
70 cd05636 LbH_G1P_TT_C_like Puta 99.7 1.5E-15 3.3E-20 124.1 14.9 110 241-350 25-159 (163)
71 cd02516 CDP-ME_synthetase CDP- 99.7 1.1E-15 2.4E-20 131.3 14.5 209 2-225 2-217 (218)
72 cd03350 LbH_THP_succinylT 2,3, 99.7 1.9E-15 4.2E-20 119.9 14.2 116 242-357 4-134 (139)
73 PRK00155 ispD 2-C-methyl-D-ery 99.7 2.8E-15 6.1E-20 129.6 16.3 212 1-231 4-223 (227)
74 TIGR03310 matur_ygfJ molybdenu 99.7 3.3E-15 7.1E-20 125.3 15.8 180 3-225 2-187 (188)
75 COG2068 Uncharacterized MobA-r 99.7 5.5E-15 1.2E-19 120.1 16.3 185 2-230 7-197 (199)
76 PF12804 NTP_transf_3: MobA-li 99.7 1.3E-15 2.9E-20 124.3 12.7 118 3-134 1-120 (160)
77 cd04745 LbH_paaY_like paaY-lik 99.7 2.5E-15 5.4E-20 121.6 14.0 109 239-347 6-123 (155)
78 TIGR02287 PaaY phenylacetic ac 99.6 2.3E-15 4.9E-20 125.1 13.0 109 239-347 14-131 (192)
79 cd02513 CMP-NeuAc_Synthase CMP 99.6 1.5E-14 3.3E-19 124.7 18.6 201 2-228 3-221 (223)
80 cd04182 GT_2_like_f GT_2_like_ 99.6 3.5E-15 7.5E-20 124.9 13.7 117 1-128 1-119 (186)
81 COG0663 PaaY Carbonic anhydras 99.6 3.6E-15 7.8E-20 118.6 12.3 113 239-351 17-137 (176)
82 PRK11830 dapD 2,3,4,5-tetrahyd 99.6 2.7E-15 5.8E-20 129.8 12.6 115 244-358 102-235 (272)
83 cd05636 LbH_G1P_TT_C_like Puta 99.6 1.1E-14 2.3E-19 119.1 14.4 97 240-337 6-103 (163)
84 PLN02296 carbonate dehydratase 99.6 7.1E-15 1.5E-19 128.0 13.8 108 240-347 59-181 (269)
85 cd04646 LbH_Dynactin_6 Dynacti 99.6 1.1E-14 2.4E-19 118.6 14.0 109 240-348 6-129 (164)
86 PRK09382 ispDF bifunctional 2- 99.6 2.7E-14 5.9E-19 130.8 18.1 199 2-230 7-212 (378)
87 TIGR01853 lipid_A_lpxD UDP-3-O 99.6 2.1E-14 4.5E-19 129.4 16.5 19 339-357 278-296 (324)
88 cd03353 LbH_GlmU_C N-acetyl-gl 99.6 1.1E-14 2.3E-19 122.7 13.6 106 243-348 7-112 (193)
89 PRK13627 carnitine operon prot 99.6 9.5E-15 2.1E-19 121.8 13.0 102 240-341 17-126 (196)
90 PLN02472 uncharacterized prote 99.6 1.1E-14 2.5E-19 125.0 13.5 109 240-348 66-189 (246)
91 cd02503 MobA MobA catalyzes th 99.6 1.7E-14 3.6E-19 120.3 14.0 107 1-125 1-109 (181)
92 KOG1461 Translation initiation 99.6 2.3E-15 4.9E-20 139.6 8.7 102 250-352 314-416 (673)
93 cd04650 LbH_FBP Ferripyochelin 99.6 3.7E-14 8.1E-19 114.3 14.6 109 239-347 6-123 (154)
94 cd05824 LbH_M1P_guanylylT_C Ma 99.6 1.6E-14 3.4E-19 103.2 10.8 79 254-332 2-80 (80)
95 TIGR03202 pucB xanthine dehydr 99.6 4.1E-14 8.8E-19 118.8 15.1 120 1-127 1-123 (190)
96 PRK05289 UDP-N-acetylglucosami 99.6 2E-14 4.4E-19 126.1 13.7 99 259-357 40-184 (262)
97 PRK13385 2-C-methyl-D-erythrit 99.6 4.9E-14 1.1E-18 122.0 15.9 213 2-231 4-224 (230)
98 COG1212 KdsB CMP-2-keto-3-deox 99.6 3.4E-13 7.3E-18 110.4 19.5 214 3-231 6-243 (247)
99 PRK00892 lpxD UDP-3-O-[3-hydro 99.6 1.1E-13 2.3E-18 126.6 18.2 96 252-347 131-252 (343)
100 TIGR03584 PseF pseudaminic aci 99.6 3.1E-13 6.6E-18 115.8 19.8 200 3-229 2-219 (222)
101 TIGR03570 NeuD_NnaD sugar O-ac 99.6 1.1E-13 2.5E-18 117.2 16.8 126 212-338 61-188 (201)
102 cd03353 LbH_GlmU_C N-acetyl-gl 99.6 5.2E-14 1.1E-18 118.4 14.2 116 242-358 24-188 (193)
103 PRK00317 mobA molybdopterin-gu 99.6 7.3E-14 1.6E-18 117.6 15.0 110 1-126 4-115 (193)
104 PRK12461 UDP-N-acetylglucosami 99.6 5.1E-14 1.1E-18 122.5 13.8 20 338-357 161-180 (255)
105 cd03360 LbH_AT_putative Putati 99.6 1.6E-13 3.4E-18 115.8 16.5 100 239-338 84-185 (197)
106 TIGR01852 lipid_A_lpxA acyl-[a 99.6 5.2E-14 1.1E-18 123.3 13.9 116 242-357 37-180 (254)
107 cd04652 LbH_eIF2B_gamma_C eIF- 99.6 3.6E-14 7.8E-19 101.6 10.5 79 254-334 2-80 (81)
108 cd03356 LbH_G1P_AT_C_like Left 99.6 3.5E-14 7.6E-19 101.2 10.3 79 253-332 1-79 (79)
109 COG1044 LpxD UDP-3-O-[3-hydrox 99.6 5.2E-14 1.1E-18 122.8 12.9 102 246-347 124-251 (338)
110 COG1044 LpxD UDP-3-O-[3-hydrox 99.6 7.9E-14 1.7E-18 121.7 14.0 102 250-351 122-237 (338)
111 cd00710 LbH_gamma_CA Gamma car 99.5 1.5E-13 3.2E-18 112.6 14.2 108 240-348 9-126 (167)
112 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 9.1E-14 2E-18 121.8 13.6 95 242-336 20-135 (254)
113 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 9.8E-14 2.1E-18 121.6 13.3 117 241-357 37-181 (254)
114 cd04645 LbH_gamma_CA_like Gamm 99.5 1.6E-13 3.5E-18 110.9 13.3 109 239-347 5-122 (153)
115 TIGR02665 molyb_mobA molybdopt 99.5 1.8E-13 3.9E-18 114.5 14.1 113 1-127 1-115 (186)
116 TIGR03308 phn_thr-fam phosphon 99.5 1.1E-13 2.5E-18 116.4 12.7 117 239-357 8-151 (204)
117 cd03350 LbH_THP_succinylT 2,3, 99.5 2.3E-13 5E-18 108.0 13.4 104 247-350 3-117 (139)
118 cd05787 LbH_eIF2B_epsilon eIF- 99.5 1.2E-13 2.5E-18 98.6 10.0 79 253-332 1-79 (79)
119 KOG1462 Translation initiation 99.5 5E-14 1.1E-18 123.6 8.0 93 264-357 329-422 (433)
120 cd03360 LbH_AT_putative Putati 99.5 8.2E-13 1.8E-17 111.3 15.3 111 242-357 81-193 (197)
121 TIGR01852 lipid_A_lpxA acyl-[a 99.5 5E-13 1.1E-17 117.1 14.4 95 242-336 19-134 (254)
122 PLN02728 2-C-methyl-D-erythrit 99.5 2.8E-12 6.1E-17 111.5 18.7 207 2-230 26-244 (252)
123 TIGR01173 glmU UDP-N-acetylglu 99.5 2.6E-13 5.5E-18 129.6 12.7 116 241-357 269-433 (451)
124 PRK02726 molybdopterin-guanine 99.5 9.3E-13 2E-17 111.3 14.5 110 1-126 8-119 (200)
125 TIGR03308 phn_thr-fam phosphon 99.5 8.2E-13 1.8E-17 111.2 13.6 96 254-350 5-138 (204)
126 cd04745 LbH_paaY_like paaY-lik 99.5 5.9E-13 1.3E-17 107.7 12.3 103 254-357 3-123 (155)
127 PRK12461 UDP-N-acetylglucosami 99.5 5.3E-13 1.1E-17 116.1 12.8 16 287-302 78-93 (255)
128 PRK13627 carnitine operon prot 99.5 6.3E-13 1.4E-17 110.9 12.6 104 253-357 12-133 (196)
129 PRK00892 lpxD UDP-3-O-[3-hydro 99.5 5.1E-13 1.1E-17 122.2 13.2 78 241-318 102-181 (343)
130 cd03358 LbH_WxcM_N_like WcxM-l 99.5 5.9E-13 1.3E-17 102.9 11.3 94 244-338 9-102 (119)
131 cd03352 LbH_LpxD UDP-3-O-acyl- 99.5 1.2E-12 2.7E-17 111.2 14.2 20 338-357 174-193 (205)
132 PRK09451 glmU bifunctional N-a 99.5 5.1E-13 1.1E-17 127.5 12.9 117 240-357 272-437 (456)
133 cd03359 LbH_Dynactin_5 Dynacti 99.5 1.2E-12 2.6E-17 106.5 13.3 107 242-348 10-135 (161)
134 PRK14355 glmU bifunctional N-a 99.5 7.9E-13 1.7E-17 126.3 13.8 116 241-357 276-440 (459)
135 PRK14489 putative bifunctional 99.5 2.1E-12 4.6E-17 118.9 16.1 114 1-128 6-121 (366)
136 PF01128 IspD: 2-C-methyl-D-er 99.5 4.1E-12 8.8E-17 107.8 16.4 207 2-230 2-219 (221)
137 TIGR02287 PaaY phenylacetic ac 99.5 7.9E-13 1.7E-17 109.9 11.9 104 253-357 10-131 (192)
138 cd04646 LbH_Dynactin_6 Dynacti 99.5 1.2E-12 2.7E-17 106.6 12.8 104 254-357 2-128 (164)
139 cd03358 LbH_WxcM_N_like WcxM-l 99.5 7.8E-13 1.7E-17 102.2 11.0 100 254-358 1-111 (119)
140 cd04652 LbH_eIF2B_gamma_C eIF- 99.5 7.7E-13 1.7E-17 94.7 10.2 79 272-351 2-80 (81)
141 TIGR00965 dapD 2,3,4,5-tetrahy 99.5 1E-12 2.2E-17 112.8 12.6 28 258-285 130-157 (269)
142 TIGR03570 NeuD_NnaD sugar O-ac 99.5 1.4E-12 3.1E-17 110.5 13.3 110 243-357 85-196 (201)
143 cd02518 GT2_SpsF SpsF is a gly 99.4 8.9E-12 1.9E-16 108.1 17.5 186 3-230 2-202 (233)
144 cd05635 LbH_unknown Uncharacte 99.4 2.8E-12 6.2E-17 95.3 12.3 85 250-337 10-95 (101)
145 PLN02296 carbonate dehydratase 99.4 1.8E-12 3.9E-17 113.0 12.9 101 256-357 57-181 (269)
146 cd04651 LbH_G1P_AT_C Glucose-1 99.4 1E-12 2.2E-17 98.6 9.8 79 258-339 2-80 (104)
147 COG1211 IspD 4-diphosphocytidy 99.4 1.9E-11 4.1E-16 103.1 18.4 211 2-229 6-225 (230)
148 cd04649 LbH_THP_succinylT_puta 99.4 2.6E-12 5.6E-17 99.6 11.4 95 242-340 4-108 (147)
149 cd03352 LbH_LpxD UDP-3-O-acyl- 99.4 5.6E-12 1.2E-16 107.2 14.4 13 287-299 56-68 (205)
150 cd04649 LbH_THP_succinylT_puta 99.4 6E-12 1.3E-16 97.6 12.7 60 247-307 3-63 (147)
151 PLN02472 uncharacterized prote 99.4 3.1E-12 6.7E-17 110.0 12.4 103 254-357 62-188 (246)
152 COG1043 LpxA Acyl-[acyl carrie 99.4 2.4E-12 5.2E-17 106.3 10.9 34 305-338 108-141 (260)
153 PRK14353 glmU bifunctional N-a 99.4 3.2E-12 7E-17 121.8 13.5 84 247-331 264-348 (446)
154 PRK14360 glmU bifunctional N-a 99.4 2.3E-12 4.9E-17 123.0 12.2 103 255-357 317-433 (450)
155 PRK05289 UDP-N-acetylglucosami 99.4 5E-12 1.1E-16 111.0 12.5 107 241-347 4-132 (262)
156 cd03356 LbH_G1P_AT_C_like Left 99.4 4.4E-12 9.5E-17 90.3 9.9 77 271-348 1-78 (79)
157 PRK11132 cysE serine acetyltra 99.4 5.5E-12 1.2E-16 109.4 12.2 91 243-338 133-228 (273)
158 PRK14356 glmU bifunctional N-a 99.4 4.5E-12 9.7E-17 121.1 12.7 36 322-357 405-441 (456)
159 cd04645 LbH_gamma_CA_like Gamm 99.4 6.1E-12 1.3E-16 101.6 11.5 83 254-337 2-93 (153)
160 cd05787 LbH_eIF2B_epsilon eIF- 99.4 5.2E-12 1.1E-16 90.0 9.7 77 271-348 1-78 (79)
161 cd00710 LbH_gamma_CA Gamma car 99.4 9.2E-12 2E-16 102.0 12.5 67 270-337 65-132 (167)
162 COG0746 MobA Molybdopterin-gua 99.4 1.9E-11 4.2E-16 101.5 14.3 108 1-127 5-114 (192)
163 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.4 4.3E-12 9.3E-17 108.8 10.8 105 253-357 82-203 (231)
164 PRK00560 molybdopterin-guanine 99.4 2.5E-11 5.5E-16 102.1 15.3 178 1-230 9-191 (196)
165 TIGR01853 lipid_A_lpxD UDP-3-O 99.4 5.9E-12 1.3E-16 113.6 12.1 123 213-336 66-210 (324)
166 cd04650 LbH_FBP Ferripyochelin 99.4 8.6E-12 1.9E-16 100.5 11.8 92 254-346 3-104 (154)
167 PRK14352 glmU bifunctional N-a 99.4 9.5E-12 2.1E-16 119.5 13.4 72 286-357 357-442 (482)
168 COG1207 GlmU N-acetylglucosami 99.4 2.4E-12 5.1E-17 115.2 8.3 110 239-350 274-384 (460)
169 COG0663 PaaY Carbonic anhydras 99.3 6.9E-12 1.5E-16 100.0 10.1 109 246-357 12-134 (176)
170 PLN02694 serine O-acetyltransf 99.3 5.1E-12 1.1E-16 109.5 10.0 86 250-338 159-247 (294)
171 COG1043 LpxA Acyl-[acyl carrie 99.3 1.5E-11 3.2E-16 101.6 11.9 52 304-355 119-183 (260)
172 PRK14354 glmU bifunctional N-a 99.3 1.4E-11 3E-16 117.9 13.5 104 255-358 320-437 (458)
173 PRK14357 glmU bifunctional N-a 99.3 8.8E-12 1.9E-16 118.8 11.9 57 301-357 356-426 (448)
174 PRK14358 glmU bifunctional N-a 99.3 1.2E-11 2.7E-16 118.3 11.9 79 240-319 277-356 (481)
175 TIGR01172 cysE serine O-acetyl 99.3 1.9E-11 4.2E-16 99.3 10.9 87 247-338 57-148 (162)
176 PRK09677 putative lipopolysacc 99.3 9.9E-11 2.1E-15 97.9 15.2 89 250-338 42-165 (192)
177 PRK10502 putative acyl transfe 99.3 2.1E-11 4.6E-16 101.1 11.0 70 269-338 71-159 (182)
178 TIGR03536 DapD_gpp 2,3,4,5-tet 99.3 5.7E-11 1.2E-15 102.9 13.7 93 243-337 176-282 (341)
179 COG1045 CysE Serine acetyltran 99.3 9.8E-12 2.1E-16 100.2 7.5 86 248-338 64-154 (194)
180 cd05824 LbH_M1P_guanylylT_C Ma 99.3 4.1E-11 8.9E-16 85.4 9.3 76 272-348 2-79 (80)
181 PRK09527 lacA galactoside O-ac 99.3 6.8E-11 1.5E-15 98.9 12.0 52 287-338 96-166 (203)
182 COG2171 DapD Tetrahydrodipicol 99.3 2.1E-11 4.5E-16 102.9 8.9 100 240-339 109-218 (271)
183 cd05635 LbH_unknown Uncharacte 99.3 5.3E-11 1.1E-15 88.4 10.1 78 241-320 19-96 (101)
184 PRK05293 glgC glucose-1-phosph 99.3 4.3E-11 9.3E-16 111.6 12.0 80 258-337 294-380 (380)
185 PRK10092 maltose O-acetyltrans 99.3 6.9E-11 1.5E-15 97.6 11.7 87 245-338 59-164 (183)
186 TIGR03535 DapD_actino 2,3,4,5- 99.3 6.3E-11 1.4E-15 102.1 11.5 93 240-337 154-257 (319)
187 cd04651 LbH_G1P_AT_C Glucose-1 99.3 6.2E-11 1.3E-15 88.9 10.0 78 241-321 3-80 (104)
188 PRK11830 dapD 2,3,4,5-tetrahyd 99.2 1E-10 2.2E-15 101.5 12.6 89 242-331 118-216 (272)
189 PRK14500 putative bifunctional 99.2 2.3E-10 5E-15 103.8 15.4 108 1-125 161-270 (346)
190 PRK14490 putative bifunctional 99.2 2.3E-10 5E-15 105.7 15.6 107 1-124 175-283 (369)
191 cd04180 UGPase_euk_like Eukary 99.2 1.2E-11 2.7E-16 108.3 6.4 166 2-178 2-187 (266)
192 cd03354 LbH_SAT Serine acetylt 99.2 9.5E-11 2.1E-15 87.6 10.1 82 252-338 3-89 (101)
193 COG1083 NeuA CMP-N-acetylneura 99.2 2.9E-10 6.3E-15 92.7 12.9 202 3-232 6-224 (228)
194 PLN02357 serine acetyltransfer 99.2 5.4E-11 1.2E-15 106.1 9.3 85 251-338 226-313 (360)
195 TIGR03536 DapD_gpp 2,3,4,5-tet 99.2 1.3E-10 2.8E-15 100.7 11.0 31 304-336 257-287 (341)
196 cd04647 LbH_MAT_like Maltose O 99.2 1.9E-10 4.1E-15 87.3 10.6 86 252-337 2-92 (109)
197 cd03357 LbH_MAT_GAT Maltose O- 99.2 3.2E-10 6.9E-15 93.0 12.4 35 304-338 119-153 (169)
198 PRK10191 putative acyl transfe 99.2 1.5E-10 3.2E-15 91.6 9.8 83 248-339 44-128 (146)
199 cd03359 LbH_Dynactin_5 Dynacti 99.2 4E-10 8.8E-15 91.7 12.6 92 241-337 29-135 (161)
200 PRK14359 glmU bifunctional N-a 99.2 1.4E-10 3E-15 110.1 11.1 75 277-352 333-415 (430)
201 cd00208 LbetaH Left-handed par 99.1 3.7E-10 8E-15 80.0 9.2 76 253-336 2-77 (78)
202 PLN02739 serine acetyltransfer 99.1 2.2E-10 4.8E-15 101.4 9.6 84 250-338 204-292 (355)
203 PRK10191 putative acyl transfe 99.1 5.8E-10 1.3E-14 88.2 10.4 95 239-334 41-140 (146)
204 TIGR01172 cysE serine O-acetyl 99.1 5E-10 1.1E-14 91.0 9.9 76 245-320 61-148 (162)
205 PRK02862 glgC glucose-1-phosph 99.1 3.6E-10 7.8E-15 106.7 10.2 79 256-338 297-394 (429)
206 PRK10502 putative acyl transfe 99.1 6.7E-10 1.5E-14 92.1 10.2 34 252-285 72-107 (182)
207 PRK11132 cysE serine acetyltra 99.1 6.1E-10 1.3E-14 96.8 9.9 78 242-319 138-227 (273)
208 PLN02241 glucose-1-phosphate a 99.1 9.2E-10 2E-14 104.2 11.6 79 255-337 303-400 (436)
209 cd05825 LbH_wcaF_like wcaF-lik 99.1 2.2E-09 4.9E-14 81.0 11.5 87 251-339 3-92 (107)
210 PRK09677 putative lipopolysacc 99.1 5E-09 1.1E-13 87.7 13.7 39 319-357 134-173 (192)
211 PRK09527 lacA galactoside O-ac 99.1 2.1E-09 4.5E-14 90.0 11.2 15 270-284 96-110 (203)
212 cd00208 LbetaH Left-handed par 99.0 2.3E-09 5.1E-14 75.8 9.4 67 271-337 2-72 (78)
213 cd05825 LbH_wcaF_like wcaF-lik 99.0 3.1E-09 6.6E-14 80.2 10.3 89 269-357 3-99 (107)
214 COG1208 GCD1 Nucleoside-diphos 99.0 2E-09 4.4E-14 98.8 11.1 89 260-350 253-348 (358)
215 TIGR03535 DapD_actino 2,3,4,5- 99.0 5E-09 1.1E-13 90.5 12.5 101 243-347 151-262 (319)
216 PRK00844 glgC glucose-1-phosph 99.0 1.6E-09 3.6E-14 101.7 10.1 71 248-320 312-382 (407)
217 PLN02694 serine O-acetyltransf 99.0 1.9E-09 4.1E-14 93.7 9.3 74 247-320 162-247 (294)
218 TIGR01208 rmlA_long glucose-1- 99.0 3.6E-09 7.8E-14 97.7 11.1 50 282-331 300-352 (353)
219 PRK00725 glgC glucose-1-phosph 99.0 2.4E-09 5.3E-14 101.0 10.0 73 249-323 325-397 (425)
220 PLN02357 serine acetyltransfer 99.0 4.5E-09 9.8E-14 93.9 10.8 91 246-337 227-329 (360)
221 COG0448 GlgC ADP-glucose pyrop 99.0 2.5E-09 5.4E-14 95.9 9.1 69 250-321 295-363 (393)
222 TIGR02091 glgC glucose-1-phosp 99.0 3.3E-09 7.2E-14 98.2 10.4 68 251-320 294-361 (361)
223 cd03357 LbH_MAT_GAT Maltose O- 99.0 9.2E-09 2E-13 84.4 11.3 66 287-357 83-161 (169)
224 cd03354 LbH_SAT Serine acetylt 99.0 9.9E-09 2.1E-13 76.6 10.5 78 243-320 6-89 (101)
225 PLN02739 serine acetyltransfer 98.9 2.9E-09 6.4E-14 94.3 8.6 76 245-320 205-292 (355)
226 PRK10092 maltose O-acetyltrans 98.9 1.6E-08 3.4E-13 83.6 11.5 86 249-336 71-172 (183)
227 KOG3121 Dynactin, subunit p25 98.9 4.5E-09 9.7E-14 79.4 6.7 93 251-343 33-141 (184)
228 COG2171 DapD Tetrahydrodipicol 98.9 1.1E-08 2.3E-13 86.7 9.7 61 243-303 106-167 (271)
229 TIGR02092 glgD glucose-1-phosp 98.9 7.5E-09 1.6E-13 96.2 9.5 78 239-320 278-355 (369)
230 cd04647 LbH_MAT_like Maltose O 98.9 1.3E-08 2.9E-13 77.1 8.9 6 349-354 93-98 (109)
231 PF02348 CTP_transf_3: Cytidyl 98.8 5.9E-08 1.3E-12 83.2 12.4 116 3-131 2-120 (217)
232 cd04193 UDPGlcNAc_PPase UDPGlc 98.8 1.1E-07 2.3E-12 85.7 13.9 157 1-162 16-222 (323)
233 cd03349 LbH_XAT Xenobiotic acy 98.8 4E-08 8.7E-13 78.1 9.9 87 253-339 3-109 (145)
234 KOG4750 Serine O-acetyltransfe 98.8 1.1E-08 2.3E-13 83.8 6.3 81 252-337 149-234 (269)
235 KOG4042 Dynactin subunit p27/W 98.7 1.5E-08 3.2E-13 77.3 4.5 105 243-347 18-139 (190)
236 COG0110 WbbJ Acetyltransferase 98.7 9.6E-08 2.1E-12 80.1 9.2 89 250-338 66-159 (190)
237 COG1045 CysE Serine acetyltran 98.7 1.9E-07 4.2E-12 75.6 9.9 78 243-320 65-154 (194)
238 COG1861 SpsF Spore coat polysa 98.6 2.6E-06 5.6E-11 70.3 15.8 184 1-230 3-204 (241)
239 KOG1460 GDP-mannose pyrophosph 98.6 6.1E-08 1.3E-12 82.9 6.7 78 266-344 285-363 (407)
240 cd03349 LbH_XAT Xenobiotic acy 98.6 2.4E-07 5.2E-12 73.6 9.6 40 317-356 75-115 (145)
241 PTZ00339 UDP-N-acetylglucosami 98.6 1.9E-06 4.1E-11 81.2 16.2 180 1-184 107-349 (482)
242 PLN02474 UTP--glucose-1-phosph 98.5 3.9E-05 8.5E-10 71.9 21.9 177 3-184 82-307 (469)
243 KOG1322 GDP-mannose pyrophosph 98.5 1.9E-07 4E-12 81.3 5.7 81 266-347 261-343 (371)
244 TIGR02353 NRPS_term_dom non-ri 98.5 3.5E-07 7.6E-12 91.0 7.6 94 248-346 588-689 (695)
245 TIGR02353 NRPS_term_dom non-ri 98.4 5.9E-07 1.3E-11 89.4 8.6 65 268-338 130-195 (695)
246 PRK00576 molybdopterin-guanine 98.4 5.2E-06 1.1E-10 68.8 11.7 95 21-126 3-101 (178)
247 COG4801 Predicted acyltransfer 98.3 5.3E-06 1.2E-10 68.5 8.9 107 243-350 7-115 (277)
248 KOG3121 Dynactin, subunit p25 98.3 1.5E-06 3.2E-11 66.0 5.1 62 242-303 42-118 (184)
249 PF07959 Fucokinase: L-fucokin 98.2 1.8E-05 3.8E-10 74.2 10.9 49 260-309 276-324 (414)
250 cd00897 UGPase_euk Eukaryotic 98.1 0.00012 2.5E-09 65.1 15.1 177 3-184 6-231 (300)
251 COG4801 Predicted acyltransfer 98.1 1.4E-05 3.1E-10 66.0 7.1 73 269-341 16-88 (277)
252 PF00132 Hexapep: Bacterial tr 98.0 5.3E-06 1.1E-10 48.9 3.4 32 305-336 3-34 (36)
253 PF00132 Hexapep: Bacterial tr 98.0 8.1E-06 1.8E-10 48.1 3.1 11 289-299 22-32 (36)
254 TIGR03552 F420_cofC 2-phospho- 97.9 0.00017 3.7E-09 60.6 11.8 86 30-125 29-116 (195)
255 KOG4042 Dynactin subunit p27/W 97.8 4.1E-05 8.9E-10 58.8 5.5 53 251-303 8-64 (190)
256 KOG4750 Serine O-acetyltransfe 97.7 5.1E-05 1.1E-09 62.6 5.3 71 249-319 152-234 (269)
257 PLN02435 probable UDP-N-acetyl 97.7 0.00061 1.3E-08 64.5 12.2 178 3-184 119-362 (493)
258 PRK13412 fkp bifunctional fuco 97.6 0.00044 9.6E-09 70.3 11.4 199 104-320 154-389 (974)
259 COG0110 WbbJ Acetyltransferase 97.6 0.00052 1.1E-08 57.4 9.9 90 268-357 66-167 (190)
260 PF01704 UDPGP: UTP--glucose-1 97.6 0.0048 1E-07 57.8 16.4 177 3-185 59-287 (420)
261 COG4284 UDP-glucose pyrophosph 97.2 0.006 1.3E-07 56.7 11.8 176 3-184 108-337 (472)
262 cd06424 UGGPase UGGPase cataly 97.1 0.0016 3.5E-08 58.2 6.8 140 3-147 3-192 (315)
263 cd00761 Glyco_tranf_GTA_type G 96.7 0.028 6.1E-07 44.0 10.7 97 26-126 3-103 (156)
264 PLN02830 UDP-sugar pyrophospho 96.6 0.046 1E-06 53.6 13.1 140 3-147 131-323 (615)
265 PF00535 Glycos_transf_2: Glyc 96.4 0.022 4.7E-07 45.6 8.7 106 26-135 4-113 (169)
266 PF07959 Fucokinase: L-fucokin 95.9 0.018 4E-07 54.1 6.2 54 274-328 272-325 (414)
267 cd06423 CESA_like CESA_like is 95.6 0.18 4E-06 40.3 10.5 100 26-128 3-106 (180)
268 PF01983 CofC: Guanylyl transf 95.4 0.024 5.2E-07 48.0 4.7 108 1-125 1-113 (217)
269 COG1920 Predicted nucleotidylt 95.4 0.31 6.8E-06 39.8 10.5 105 1-125 1-111 (210)
270 cd06427 CESA_like_2 CESA_like_ 95.1 0.37 8E-06 41.7 11.5 107 26-135 7-119 (241)
271 cd04195 GT2_AmsE_like GT2_AmsE 95.0 0.47 1E-05 39.5 11.5 99 25-128 3-108 (201)
272 cd04186 GT_2_like_c Subfamily 94.7 0.63 1.4E-05 37.0 11.2 96 26-128 3-102 (166)
273 cd04179 DPM_DPG-synthase_like 94.4 0.54 1.2E-05 38.4 10.2 106 26-135 3-114 (185)
274 cd04188 DPG_synthase DPG_synth 94.2 0.56 1.2E-05 39.5 10.1 106 26-134 3-116 (211)
275 cd06439 CESA_like_1 CESA_like_ 93.9 0.89 1.9E-05 39.4 11.0 103 18-126 25-135 (251)
276 cd04196 GT_2_like_d Subfamily 93.8 0.85 1.8E-05 38.2 10.4 100 26-128 4-107 (214)
277 cd06442 DPM1_like DPM1_like re 93.2 1 2.2E-05 38.2 10.1 104 26-133 3-111 (224)
278 cd06421 CESA_CelA_like CESA_Ce 93.2 1.9 4E-05 36.7 11.7 98 25-127 6-111 (234)
279 cd06433 GT_2_WfgS_like WfgS an 92.2 2 4.4E-05 35.3 10.4 96 26-128 4-103 (202)
280 cd02525 Succinoglycan_BP_ExoA 92.1 1.7 3.7E-05 37.3 10.2 99 26-129 6-110 (249)
281 cd04185 GT_2_like_b Subfamily 91.9 1.9 4.1E-05 35.8 10.0 98 27-126 4-105 (202)
282 PRK11204 N-glycosyltransferase 91.9 1.9 4.2E-05 40.7 11.0 100 25-128 59-162 (420)
283 PF04519 Bactofilin: Polymer-f 91.9 0.55 1.2E-05 34.6 5.8 82 259-344 4-86 (101)
284 cd04187 DPM1_like_bac Bacteria 91.6 1.8 4E-05 35.2 9.4 102 26-132 3-111 (181)
285 cd02510 pp-GalNAc-T pp-GalNAc- 91.3 3.2 6.8E-05 37.2 11.3 102 26-130 4-113 (299)
286 cd06435 CESA_NdvC_like NdvC_li 91.1 2.9 6.2E-05 35.7 10.5 101 25-126 3-110 (236)
287 cd06438 EpsO_like EpsO protein 91.0 4.2 9.2E-05 33.2 11.0 99 25-127 2-108 (183)
288 cd06434 GT2_HAS Hyaluronan syn 90.8 3.8 8.3E-05 34.9 10.9 89 32-126 14-103 (235)
289 KOG2638 UDP-glucose pyrophosph 90.6 14 0.00031 34.2 19.4 60 6-68 109-175 (498)
290 cd04192 GT_2_like_e Subfamily 90.2 3.1 6.6E-05 35.2 9.7 100 26-129 3-111 (229)
291 PLN02726 dolichyl-phosphate be 90.0 3.7 8E-05 35.4 10.2 107 25-134 14-127 (243)
292 cd06420 GT2_Chondriotin_Pol_N 89.9 3.3 7.1E-05 33.6 9.4 97 26-125 3-104 (182)
293 cd02520 Glucosylceramide_synth 89.4 5.8 0.00013 32.9 10.6 97 26-125 7-111 (196)
294 PRK14583 hmsR N-glycosyltransf 89.4 3.7 7.9E-05 39.3 10.4 100 24-128 79-183 (444)
295 TIGR03111 glyc2_xrt_Gpos1 puta 88.2 5.8 0.00012 37.9 10.8 99 25-128 54-159 (439)
296 PRK10073 putative glycosyl tra 87.2 8.4 0.00018 35.1 10.9 105 25-134 11-119 (328)
297 cd04184 GT2_RfbC_Mx_like Myxoc 87.0 9.9 0.00021 31.3 10.6 92 32-127 15-110 (202)
298 COG1664 CcmA Integral membrane 86.7 5.2 0.00011 31.7 7.9 95 242-341 26-121 (146)
299 cd06437 CESA_CaSu_A2 Cellulose 85.9 9 0.00019 32.6 10.0 97 26-125 7-112 (232)
300 PF04519 Bactofilin: Polymer-f 85.9 2 4.4E-05 31.6 5.0 93 242-339 5-98 (101)
301 TIGR03472 HpnI hopanoid biosyn 85.6 8 0.00017 36.0 10.1 99 25-126 46-152 (373)
302 PRK10714 undecaprenyl phosphat 84.7 9.4 0.0002 34.8 9.9 102 26-131 12-120 (325)
303 PF13641 Glyco_tranf_2_3: Glyc 83.6 1.9 4.1E-05 36.6 4.6 98 25-125 6-111 (228)
304 KOG2388 UDP-N-acetylglucosamin 83.5 1.2 2.6E-05 41.8 3.5 61 3-66 100-175 (477)
305 TIGR03469 HonB hopene-associat 83.2 13 0.00028 34.7 10.4 107 25-131 45-164 (384)
306 PRK13412 fkp bifunctional fuco 82.3 2.7 5.8E-05 43.8 5.7 56 282-338 332-389 (974)
307 TIGR01556 rhamnosyltran L-rham 81.8 15 0.00032 32.4 9.9 91 32-128 8-101 (281)
308 COG1664 CcmA Integral membrane 80.9 7.8 0.00017 30.7 6.7 80 256-339 22-102 (146)
309 COG1215 Glycosyltransferases, 80.9 16 0.00036 34.4 10.4 199 25-230 59-280 (439)
310 cd02526 GT2_RfbF_like RfbF is 80.2 17 0.00037 30.8 9.4 89 29-122 7-97 (237)
311 PTZ00260 dolichyl-phosphate be 79.0 26 0.00056 32.0 10.6 95 30-127 81-189 (333)
312 cd06913 beta3GnTL1_like Beta 1 78.9 31 0.00067 28.9 10.5 101 26-129 3-113 (219)
313 KOG2978 Dolichol-phosphate man 78.0 33 0.0007 28.4 9.4 104 30-136 17-124 (238)
314 cd02511 Beta4Glucosyltransfera 78.0 28 0.00061 29.6 10.0 92 26-128 6-99 (229)
315 PRK11498 bcsA cellulose syntha 76.6 34 0.00075 35.5 11.5 98 24-130 264-369 (852)
316 TIGR03030 CelA cellulose synth 76.1 32 0.0007 35.2 11.2 100 25-129 136-257 (713)
317 PRK10018 putative glycosyl tra 75.0 30 0.00064 30.8 9.5 96 26-127 11-112 (279)
318 PF13704 Glyco_tranf_2_4: Glyc 72.8 32 0.00069 24.6 8.8 80 31-115 4-85 (97)
319 cd02522 GT_2_like_a GT_2_like_ 69.0 38 0.00083 28.2 8.7 92 26-128 5-100 (221)
320 PRK10063 putative glycosyl tra 67.7 82 0.0018 27.3 11.6 93 30-128 12-109 (248)
321 PF10111 Glyco_tranf_2_2: Glyc 66.9 91 0.002 27.5 11.1 83 38-123 23-111 (281)
322 COG1216 Predicted glycosyltran 65.8 55 0.0012 29.3 9.4 107 26-135 10-119 (305)
323 cd06436 GlcNAc-1-P_transferase 63.9 57 0.0012 26.7 8.5 99 26-125 3-114 (191)
324 PF07302 AroM: AroM protein; 63.3 80 0.0017 26.9 9.1 100 3-114 91-190 (221)
325 PRK13915 putative glucosyl-3-p 61.4 88 0.0019 28.2 9.8 99 26-127 37-143 (306)
326 TIGR02990 ectoine_eutA ectoine 61.1 99 0.0022 26.8 9.6 83 33-117 107-196 (239)
327 cd04191 Glucan_BSP_ModH Glucan 59.7 1.2E+02 0.0026 26.5 11.8 103 25-129 4-124 (254)
328 COG0299 PurN Folate-dependent 58.7 84 0.0018 26.2 8.1 16 1-16 1-16 (200)
329 PRK05647 purN phosphoribosylgl 56.7 41 0.00088 28.2 6.3 16 1-16 2-17 (200)
330 PRK05454 glucosyltransferase M 55.2 1.9E+02 0.004 29.6 11.7 104 24-128 128-248 (691)
331 TIGR00639 PurN phosphoribosylg 52.2 88 0.0019 26.0 7.6 16 1-16 1-16 (190)
332 PF14134 DUF4301: Domain of un 51.0 1.4E+02 0.003 28.8 9.2 96 20-118 165-299 (513)
333 cd04190 Chitin_synth_C C-termi 49.6 97 0.0021 26.6 7.9 26 103-128 75-101 (244)
334 PF00583 Acetyltransf_1: Acety 48.7 35 0.00077 23.1 4.2 37 30-66 43-79 (83)
335 COG0381 WecB UDP-N-acetylgluco 47.4 90 0.002 29.0 7.3 101 27-130 9-118 (383)
336 PRK10481 hypothetical protein; 46.2 1.9E+02 0.0041 24.8 10.9 86 33-124 118-203 (224)
337 cd02514 GT13_GLCNAC-TI GT13_GL 45.9 2.4E+02 0.0052 25.9 11.6 102 25-128 5-128 (334)
338 PRK13010 purU formyltetrahydro 45.7 1.8E+02 0.004 26.0 9.0 40 34-78 107-147 (289)
339 TIGR02638 lactal_redase lactal 45.2 1.5E+02 0.0032 27.6 8.8 85 29-114 12-99 (379)
340 COG2984 ABC-type uncharacteriz 44.6 2.4E+02 0.0053 25.5 11.0 94 29-128 140-238 (322)
341 PF05060 MGAT2: N-acetylglucos 43.5 46 0.00099 30.6 4.8 55 12-66 23-81 (356)
342 cd01025 TOPRIM_recR TOPRIM_rec 43.0 1E+02 0.0022 23.1 5.9 48 32-79 43-92 (112)
343 PRK14716 bacteriophage N4 adso 41.1 2.7E+02 0.0058 27.3 10.0 98 24-121 70-179 (504)
344 PF01936 NYN: NYN domain; Int 39.8 1.7E+02 0.0037 22.4 7.8 100 32-136 20-126 (146)
345 PF01713 Smr: Smr domain; Int 39.1 1E+02 0.0022 21.4 5.2 37 32-68 13-53 (83)
346 PRK00923 sirohydrochlorin coba 39.0 49 0.0011 25.2 3.9 23 30-52 44-66 (126)
347 cd08190 HOT Hydroxyacid-oxoaci 37.9 2.5E+02 0.0054 26.6 9.2 79 30-113 7-92 (414)
348 cd08189 Fe-ADH5 Iron-containin 37.1 2.6E+02 0.0056 26.0 9.1 84 30-114 10-96 (374)
349 PLN02331 phosphoribosylglycina 36.8 2.5E+02 0.0055 23.7 8.1 15 2-16 1-15 (207)
350 cd08176 LPO Lactadehyde:propan 36.3 2.5E+02 0.0054 26.1 8.8 83 30-113 12-97 (377)
351 TIGR00236 wecB UDP-N-acetylglu 35.9 99 0.0021 28.4 6.1 83 26-113 5-97 (365)
352 TIGR00655 PurU formyltetrahydr 35.7 2.3E+02 0.005 25.2 8.0 42 33-79 97-139 (280)
353 cd08192 Fe-ADH7 Iron-containin 35.1 2.9E+02 0.0063 25.6 9.1 84 30-114 8-94 (370)
354 cd08194 Fe-ADH6 Iron-containin 34.7 3.2E+02 0.0069 25.4 9.3 80 30-110 7-88 (375)
355 PF13712 Glyco_tranf_2_5: Glyc 34.6 2.9E+02 0.0062 23.4 9.0 54 80-136 36-91 (217)
356 PF05679 CHGN: Chondroitin N-a 34.3 3.3E+02 0.0072 26.6 9.5 92 25-118 252-358 (499)
357 cd03413 CbiK_C Anaerobic cobal 34.3 51 0.0011 24.3 3.1 23 30-52 40-62 (103)
358 cd08182 HEPD Hydroxyethylphosp 34.1 3.4E+02 0.0073 25.1 9.3 77 30-111 7-86 (367)
359 PF02633 Creatininase: Creatin 34.0 1.2E+02 0.0026 26.0 5.9 46 33-78 87-135 (237)
360 TIGR00285 DNA-binding protein 33.8 63 0.0014 23.0 3.3 30 26-55 4-35 (87)
361 PF09837 DUF2064: Uncharacteri 33.7 2.1E+02 0.0046 21.7 7.1 83 37-126 1-86 (122)
362 cd08551 Fe-ADH iron-containing 33.6 3.4E+02 0.0074 25.1 9.3 84 30-114 7-93 (370)
363 PF04273 DUF442: Putative phos 32.8 1.8E+02 0.004 21.6 5.9 71 36-107 18-91 (110)
364 cd08188 Fe-ADH4 Iron-containin 32.7 3.4E+02 0.0074 25.2 9.1 81 30-111 12-94 (377)
365 COG1454 EutG Alcohol dehydroge 32.2 3.5E+02 0.0075 25.3 8.8 77 29-110 12-94 (377)
366 PRK11234 nfrB bacteriophage N4 31.5 5E+02 0.011 26.8 10.5 100 25-125 68-179 (727)
367 TIGR00615 recR recombination p 31.4 1.6E+02 0.0036 24.5 5.9 46 33-78 122-169 (195)
368 cd08193 HVD 5-hydroxyvalerate 31.3 3.7E+02 0.0079 25.0 9.1 80 30-110 10-91 (376)
369 KOG2977 Glycosyltransferase [G 30.5 4E+02 0.0086 23.9 8.2 88 33-123 85-180 (323)
370 PLN02828 formyltetrahydrofolat 29.9 1.7E+02 0.0036 25.9 6.0 10 217-226 227-236 (268)
371 PRK13011 formyltetrahydrofolat 29.6 3.4E+02 0.0074 24.2 8.1 10 218-227 246-255 (286)
372 PRK10624 L-1,2-propanediol oxi 29.5 3.9E+02 0.0084 24.9 8.9 83 30-113 14-99 (382)
373 COG0463 WcaA Glycosyltransfera 29.0 2.8E+02 0.0062 21.9 7.4 89 27-120 10-102 (291)
374 PRK04946 hypothetical protein; 28.6 1.1E+02 0.0023 25.3 4.3 51 21-71 93-149 (181)
375 PF01762 Galactosyl_T: Galacto 28.3 3.4E+02 0.0073 22.3 8.8 138 44-185 19-164 (195)
376 cd06431 GT8_LARGE_C LARGE cata 27.5 4.4E+02 0.0096 23.4 12.1 79 46-125 30-121 (280)
377 KOG2791 N-acetylglucosaminyltr 27.4 1.2E+02 0.0026 27.7 4.6 43 24-66 121-167 (455)
378 PF13727 CoA_binding_3: CoA-bi 27.2 1.1E+02 0.0024 24.2 4.4 50 28-78 121-174 (175)
379 TIGR00962 atpA proton transloc 27.0 2.8E+02 0.006 27.1 7.5 41 30-70 173-214 (501)
380 PF10662 PduV-EutP: Ethanolami 26.4 1.3E+02 0.0027 23.8 4.2 33 33-65 107-142 (143)
381 PF13685 Fe-ADH_2: Iron-contai 25.7 2.4E+02 0.0053 24.6 6.3 66 33-98 6-72 (250)
382 cd07766 DHQ_Fe-ADH Dehydroquin 25.3 5.1E+02 0.011 23.4 8.8 91 30-124 7-99 (332)
383 cd06432 GT8_HUGT1_C_like The C 25.0 3.5E+02 0.0075 23.5 7.2 78 46-124 30-118 (248)
384 PRK09860 putative alcohol dehy 24.4 4.2E+02 0.0091 24.7 8.1 77 29-110 14-96 (383)
385 PRK13844 recombination protein 24.4 2.6E+02 0.0057 23.5 5.9 45 33-78 126-172 (200)
386 cd06287 PBP1_LacI_like_8 Ligan 23.6 4.4E+02 0.0096 22.7 7.9 28 28-55 100-127 (269)
387 cd08186 Fe-ADH8 Iron-containin 23.6 5.9E+02 0.013 23.7 9.0 80 30-114 7-97 (383)
388 PRK13601 putative L7Ae-like ri 23.4 1.3E+02 0.0028 21.2 3.4 41 37-78 16-56 (82)
389 PF02641 DUF190: Uncharacteriz 23.4 1.3E+02 0.0029 21.9 3.7 28 28-55 16-43 (101)
390 cd00505 Glyco_transf_8 Members 23.2 4.8E+02 0.01 22.3 9.1 78 46-125 30-119 (246)
391 cd08185 Fe-ADH1 Iron-containin 23.0 5.7E+02 0.012 23.7 8.8 83 30-114 10-96 (380)
392 PF02273 Acyl_transf_2: Acyl t 22.9 1.3E+02 0.0028 26.3 3.9 54 3-56 32-110 (294)
393 TIGR00288 conserved hypothetic 22.6 4.1E+02 0.009 21.4 11.3 89 34-135 43-135 (160)
394 KOG3857 Alcohol dehydrogenase, 22.6 5E+02 0.011 24.0 7.6 82 30-112 54-138 (465)
395 PRK15489 nfrB bacteriophage N4 22.4 4.6E+02 0.01 26.9 8.3 101 25-126 76-188 (703)
396 KOG2638 UDP-glucose pyrophosph 22.4 1.3E+02 0.0027 28.4 4.0 10 104-113 240-249 (498)
397 cd07039 TPP_PYR_POX Pyrimidine 22.2 4.1E+02 0.0089 21.2 7.9 88 35-130 4-91 (164)
398 PRK13602 putative ribosomal pr 21.8 1.4E+02 0.0031 20.8 3.4 43 36-79 18-60 (82)
399 PRK15454 ethanol dehydrogenase 21.3 6.7E+02 0.015 23.5 8.9 76 30-110 33-114 (395)
400 cd03409 Chelatase_Class_II Cla 20.9 1.3E+02 0.0029 21.4 3.3 24 31-54 44-67 (101)
401 PF04392 ABC_sub_bind: ABC tra 20.8 2.3E+02 0.0049 25.2 5.5 94 25-124 108-206 (294)
402 cd01132 F1_ATPase_alpha F1 ATP 20.8 5.7E+02 0.012 22.7 7.7 39 30-68 81-120 (274)
403 PF01697 Glyco_transf_92: Glyc 20.5 5.7E+02 0.012 22.2 8.7 55 24-78 6-64 (285)
404 PRK13600 putative ribosomal pr 20.5 1.4E+02 0.0031 21.1 3.2 52 34-86 18-69 (84)
405 PRK05782 bifunctional sirohydr 20.2 1.9E+02 0.0042 26.5 4.8 29 24-53 43-71 (335)
406 PF01755 Glyco_transf_25: Glyc 20.1 4.9E+02 0.011 21.3 9.6 45 84-128 68-112 (200)
No 1
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=6e-65 Score=431.43 Aligned_cols=358 Identities=59% Similarity=0.980 Sum_probs=337.8
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHH-hhhhccCcEEEEec
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLK-EFEAKLGIKIICSQ 79 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~-~~~~~~~~~i~~~~ 79 (358)
|+|+||.+|.|+||+|||..+||++.|++|+|||++++++|.++|+++|++.+++..+++..|+. .+...+|+++.+..
T Consensus 10 vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~ 89 (371)
T KOG1322|consen 10 VKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEILAST 89 (371)
T ss_pred eeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999998886666654 46678899999999
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEE
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEK 156 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~ 156 (358)
++++.|+++.+..+++++....+.+|+|++||.++.+++.+++++|.++++++|+++ ++|++||++..|+++|+|.+
T Consensus 90 eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~ 169 (371)
T KOG1322|consen 90 ETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIR 169 (371)
T ss_pred ccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEecCCCceeE
Confidence 999999999999999888544444899999999999999999999999999999998 78999999999996799999
Q ss_pred EeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHHHHhhcc
Q 018327 157 FVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 236 (358)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~l~~~~~ 236 (358)
|.|||+.+.++.+++|+|+|+++++.+++..+.+++.+++|.++++.+++++.++|||.|+++|.||+++...|++....
T Consensus 170 F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~ptSiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~ 249 (371)
T KOG1322|consen 170 FVEKPKDLVSNKINAGIYILNPEVLDRILLRPTSIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPK 249 (371)
T ss_pred ehhCchhhhhccccceEEEECHHHHhHhhhcccchhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999998888
Q ss_pred cCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCcc
Q 018327 237 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA 316 (358)
Q Consensus 237 ~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~ 316 (358)
....++.+++.+.++..+++.+.+|++|.|++|++||++|+|+++++|.+|.++.+..++..+.|.++++|.++.||.|+
T Consensus 250 ~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~ 329 (371)
T KOG1322|consen 250 YTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWA 329 (371)
T ss_pred cCCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCce
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccEECCCcEECCceEEcCcEEccCceeccCCCCCcccC
Q 018327 317 RVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 358 (358)
Q Consensus 317 ~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~~~~~ 358 (358)
+|.+++++|++++|.+.-.+.++.+.|++.+.-.++..+|+|
T Consensus 330 ~id~~a~lG~nV~V~d~~~vn~g~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 330 RIDKNAVLGKNVIVADEDYVNEGSGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred EEecccEeccceEEecccccccceeEEeccceeecccccccC
Confidence 999999999999999999999889999999999988888876
No 2
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-57 Score=412.89 Aligned_cols=338 Identities=40% Similarity=0.660 Sum_probs=295.6
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|+|||||||+|+||+|+|..+||||+|++|||||+|+|++|.+.|++++++.+++..+.+++|+.+- ..+++.+.+..+
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~-~~~~~~I~y~~e 80 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDG-EGLGVRITYVVE 80 (358)
T ss_pred ceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcc-cccCCceEEEec
Confidence 8999999999999999999999999999999999999999999999999999999999999999972 455789999999
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKF 157 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~ 157 (358)
..+.||+++++++.+.+ .. ++|++++||.+++.++.+++++|+++.+.+++.. .++..||++..+++++++..|
T Consensus 81 ~~~lGTag~l~~a~~~l--~~-~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f 157 (358)
T COG1208 81 KEPLGTAGALKNALDLL--GG-DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEF 157 (358)
T ss_pred CCcCccHHHHHHHHHhc--CC-CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEE
Confidence 99999999999999999 43 4999999999999999999999999876677766 555789999988543699999
Q ss_pred eecCC--CCCCCeEEEEEEEEChhhhhhcc-CCCCCcccchHHHHHhcCc-eEEEeecCeEEecCCHHHHHHHHHHHHHh
Q 018327 158 VEKPK--LFVGNKINAGIYLLNPAVLDRIE-LRPTSIEKEVFPKIALEGK-LFAMVLPGFWMDIGQPRDYITGLRLYLDS 233 (358)
Q Consensus 158 ~ek~~--~~~~~~~~~Giy~~~~~~l~~l~-~~~~~~~~d~l~~l~~~~~-v~~~~~~~~~~di~t~~dy~~a~~~~l~~ 233 (358)
.|||. ...+.++++|+|+|++++|+++. ....++..++++.++++++ ++++.++++|.|+++|+||+++++.+++.
T Consensus 158 ~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~ 237 (358)
T COG1208 158 REKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG 237 (358)
T ss_pred EecCCCCCCCCceEEeEEEEECHHHhhhcccCCcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhc
Confidence 99994 56788999999999999999776 3456777789999999998 99999999999999999999999999865
Q ss_pred hcccCcccc-------cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEE
Q 018327 234 LRKKSSLKL-------ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSII 306 (358)
Q Consensus 234 ~~~~~~~~~-------~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i 306 (358)
......... .. +.+.++++|++++.|++++.|+++++||++|+||+++.|.+|+|+++|.|++++.|.+|+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi 316 (358)
T COG1208 238 DGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSII 316 (358)
T ss_pred cccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEE
Confidence 443322222 23 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCEECCccEEcCccEECCCcEECCceEEc-CcEEccCceeccC
Q 018327 307 GWHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSS 350 (358)
Q Consensus 307 ~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~ 350 (358)
+++|+||++. .+|+ +++|.++.+. +..+.+++.+..+
T Consensus 317 ~~~~~ig~~~------~i~d-~~~g~~~~i~~g~~~~~~~~~~~~ 354 (358)
T COG1208 317 GENCKIGASL------IIGD-VVIGINSEILPGVVVGPGSVVESG 354 (358)
T ss_pred cCCcEECCce------eecc-eEecCceEEcCceEeCCCccccCc
Confidence 9999999922 2777 8888877775 4444555554443
No 3
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=7.6e-53 Score=391.73 Aligned_cols=342 Identities=26% Similarity=0.376 Sum_probs=259.7
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccC-------
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLG------- 72 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~------- 72 (358)
|+|||||||+|+||+|+|..+||+|+|++|| |||+|+|++|.++|+++++|++++..+.+.+|+.+. +.|+
T Consensus 4 m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 82 (380)
T PRK05293 4 MLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIG-SPWDLDRINGG 82 (380)
T ss_pred EEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCC-CcccccCCCCC
Confidence 8999999999999999999999999999999 899999999999999999999999999999999752 2333
Q ss_pred cEEE--EeccCC---cCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCe
Q 018327 73 IKII--CSQETE---PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKY 142 (358)
Q Consensus 73 ~~i~--~~~~~~---~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~ 142 (358)
+.+. +..+.+ +.|++++++++++.+....+++||+++||.+++.++.++++.|.++++++++++ +++..|
T Consensus 83 ~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~y 162 (380)
T PRK05293 83 VTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRF 162 (380)
T ss_pred EEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhcccc
Confidence 3332 333332 479999999999998432234899999999999999999999988888877765 467889
Q ss_pred eeEEEcCCCCcEEEEeecCCCCCCCeEEEEEEEEChhhhhhc-cC------CCCCcccchHHHHHhcC-ceEEEeecCeE
Q 018327 143 GVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-EL------RPTSIEKEVFPKIALEG-KLFAMVLPGFW 214 (358)
Q Consensus 143 ~~~~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~------~~~~~~~d~l~~l~~~~-~v~~~~~~~~~ 214 (358)
|++..|++ ++|.++.|||..+.+++.++|+|+|+++.|..+ .. ...++..|+++.+++++ +++++..+++|
T Consensus 163 G~v~~d~~-g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w 241 (380)
T PRK05293 163 GIMNTDEN-MRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYW 241 (380)
T ss_pred CEEEECCC-CcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEE
Confidence 99999876 899999999977778899999999999988643 21 12345578999998765 59999999999
Q ss_pred EecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcE
Q 018327 215 MDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVR 294 (358)
Q Consensus 215 ~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~ 294 (358)
.|++++++|+++++.++...... ....+...+.+...+.+.+.|++++.| .++.||++|.|+. .+.+|+|+++|.
T Consensus 242 ~digt~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~v~~s~ig~~~~ 316 (380)
T PRK05293 242 KDVGTIESLWEANMELLRPENPL--NLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG--TVEHSVLFQGVQ 316 (380)
T ss_pred EeCCCHHHHHHHHHHHcCCCchh--hhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--eecceEEcCCCE
Confidence 99999999999998887543221 111222233333344444555555555 3666777777753 455777777777
Q ss_pred ECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcC-----cEEccCceeccC
Q 018327 295 IKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-----GVVLPHKEIKSS 350 (358)
Q Consensus 295 i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-----~~v~~~~~i~~~ 350 (358)
|+++|+|.+|+|+++|.||+++.|.+ |+|+++++|++++.+.+ .+++.+..|..+
T Consensus 317 I~~~~~i~~svi~~~~~i~~~~~i~~-~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~ 376 (380)
T PRK05293 317 VGEGSVVKDSVIMPGAKIGENVVIER-AIIGENAVIGDGVIIGGGKEVITVIGENEVIGVG 376 (380)
T ss_pred ECCCCEEECCEEeCCCEECCCeEEeE-EEECCCCEECCCCEEcCCCceeEEEeCCCCCCCC
Confidence 77777777777777777777777766 77777777777777765 444555544443
No 4
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-53 Score=356.55 Aligned_cols=356 Identities=39% Similarity=0.726 Sum_probs=323.3
Q ss_pred eEEEEecC--CccccCcCCCCCCCcccccCCcchHHHHHHHHHHC-CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEe
Q 018327 2 KALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICS 78 (358)
Q Consensus 2 ~avIla~G--~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 78 (358)
+||||.+| +|+||+|++-+.||+|+|++|+|||.|.|+.+.+. |..+|+++.=++.+.+.+|+....+.+.+.+.|+
T Consensus 4 ~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrYL 83 (407)
T KOG1460|consen 4 KAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRYL 83 (407)
T ss_pred EEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchhhh
Confidence 69999998 79999999999999999999999999999999776 5999999888888899999998888889999999
Q ss_pred ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCeeeEEEcCCCCc
Q 018327 79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGK 153 (358)
Q Consensus 79 ~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~ 153 (358)
.++.+.|+++.+++.++.+-..+.+.++++++|.-+.++|+++++.|++.+...+++. ++..+||.+..|++|++
T Consensus 84 ~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~e 163 (407)
T KOG1460|consen 84 REDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTGE 163 (407)
T ss_pred ccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcCc
Confidence 9999999999999999988777777999999999999999999999999999888887 67789999999998999
Q ss_pred EEEEeecCCCCCCCeEEEEEEEEChhhhhhccC--------------------CCC---CcccchHHHHHhcCceEEEee
Q 018327 154 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL--------------------RPT---SIEKEVFPKIALEGKLFAMVL 210 (358)
Q Consensus 154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~--------------------~~~---~~~~d~l~~l~~~~~v~~~~~ 210 (358)
|+++.|||..+.++.+++|+|+|++++|+.+.+ .+. .++.|++..|+.++++|+|..
T Consensus 164 vlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t 243 (407)
T KOG1460|consen 164 VLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYET 243 (407)
T ss_pred eEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEec
Confidence 999999999999999999999999999875521 112 345689999999999999999
Q ss_pred cCeEEecCCHHHHHHHHHHHHHhhcccCccccc--CC--cEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEee
Q 018327 211 PGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLA--TG--ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR 286 (358)
Q Consensus 211 ~~~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~--~~--~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~ 286 (358)
+++|..+.|+-.-+.+++.+|..+...-...+. ++ +.|.++++|+|++++++.++|++|+.||.+++||++++|.+
T Consensus 244 ~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~ 323 (407)
T KOG1460|consen 244 TDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRE 323 (407)
T ss_pred ccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeee
Confidence 999999999999999999999877665555553 33 45999999999999999999999999999999999999999
Q ss_pred eEECCCcEECCCcEEeccEEccCCEECCccEEcC-------------ccEECCCcEECCceEEcCcEEccCceeccCCCC
Q 018327 287 CTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------------MTILGEDVHVCDEIYSNGGVVLPHKEIKSSILK 353 (358)
Q Consensus 287 ~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------------~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 353 (358)
|+|.+++.|.+|+++-+|+||.++.||.|+++.. =.++|+.+.+++.+.+.++.+.|++.+..+..+
T Consensus 324 sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp~k~l~vs~~~ 403 (407)
T KOG1460|consen 324 SIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLPNKELNVSVQD 403 (407)
T ss_pred eeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEecCCccceeeec
Confidence 9999999999999999999999999999999885 267899999999999999999999999988877
Q ss_pred CcccC
Q 018327 354 PEIVM 358 (358)
Q Consensus 354 ~~~~~ 358 (358)
+|+|
T Consensus 404 -eIil 407 (407)
T KOG1460|consen 404 -EIIL 407 (407)
T ss_pred -ceeC
Confidence 6654
No 5
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-52 Score=368.98 Aligned_cols=331 Identities=25% Similarity=0.424 Sum_probs=287.0
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcc-hHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHh---hh---hccCcE
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKP-MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE---FE---AKLGIK 74 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~p-li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~---~~---~~~~~~ 74 (358)
-|+|||+|.|+||.|||+.++||-+|++||. +|+++|.++.++|+++|.|++.++...+.+|+.+ |. +..++.
T Consensus 7 laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~~~v~ 86 (393)
T COG0448 7 LAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKNGGVF 86 (393)
T ss_pred EEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccccCcEE
Confidence 4899999999999999999999999999999 9999999999999999999999999999999986 31 112233
Q ss_pred EEEecc-----CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCeee
Q 018327 75 IICSQE-----TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGV 144 (358)
Q Consensus 75 i~~~~~-----~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 144 (358)
+..-.+ ....|+++++++.+..+++.+.+.++++.||++++.|+++++++|.+.++++|+++ ++++.+|+
T Consensus 87 ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGi 166 (393)
T COG0448 87 ILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGV 166 (393)
T ss_pred EeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCc
Confidence 322111 13468999999999988877777999999999999999999999999999999998 67789999
Q ss_pred EEEcCCCCcEEEEeecCCC-CCCC-eEEEEEEEEChhhhhhccC-------CCCCcccchHHHHHhcCceEEEeecCeEE
Q 018327 145 VVMEESTGKVEKFVEKPKL-FVGN-KINAGIYLLNPAVLDRIEL-------RPTSIEKEVFPKIALEGKLFAMVLPGFWM 215 (358)
Q Consensus 145 ~~~d~~~~~v~~~~ek~~~-~~~~-~~~~Giy~~~~~~l~~l~~-------~~~~~~~d~l~~l~~~~~v~~~~~~~~~~ 215 (358)
..+|++ ++|+.|.|||.. +.++ +.++|+|+|+.+.|..+.+ ...+|..+++|.+++.+.+++|+++|||.
T Consensus 167 m~~D~~-~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~ 245 (393)
T COG0448 167 MNVDEN-GRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSGYWR 245 (393)
T ss_pred eEECCC-CCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCCEEEEeccchhh
Confidence 999997 999999999987 4444 8999999999998875532 23578899999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEE
Q 018327 216 DIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRI 295 (358)
Q Consensus 216 di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i 295 (358)
|++|.++|+++|+.+++. ...-....+.-.|......-|.+++..++.+ .+|.|++||+|.. .|.||+|+.++.|
T Consensus 246 dVgTi~syy~aNmdLl~~--~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~I 320 (393)
T COG0448 246 DVGTIDSYYEANMDLLSP--QPELNLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVRI 320 (393)
T ss_pred hcccHHHHHHhhHHhcCC--CCcccccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeEE
Confidence 999999999999999861 1111123455567777777788888887777 4999999999998 8999999999999
Q ss_pred CCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCc
Q 018327 296 KKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG 339 (358)
Q Consensus 296 ~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~ 339 (358)
+.+|.|.+|+|+++|.||.+|.|.+ ++|.++|+|++|+.+++.
T Consensus 321 ~~gs~i~~svim~~~~IG~~~~l~~-aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 321 GKGSVIENSVIMPDVEIGEGAVLRR-AIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred CCCCEEEeeEEeCCcEECCCCEEEE-EEeCCCcEeCCCcEEcCC
Confidence 9999999999999999999999999 999999999999999876
No 6
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.2e-51 Score=383.67 Aligned_cols=333 Identities=20% Similarity=0.300 Sum_probs=255.5
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEe-
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICS- 78 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~- 78 (358)
|+|||||||.|+||+|+|..+||+|+|++|| |||+|+|++|.++|+++++|++++..+.+.+|+.+.....++...+.
T Consensus 6 ~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK00844 6 VLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGLLGNYIT 85 (407)
T ss_pred eEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCccccCCCeEE
Confidence 6899999999999999999999999999999 99999999999999999999999999999999974111111211121
Q ss_pred --ccC------CcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCeeeE
Q 018327 79 --QET------EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVV 145 (358)
Q Consensus 79 --~~~------~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 145 (358)
.++ .+.|++++++++++++.+...++|++++||.+++.++.+++++|.++++++++++ +++..||++
T Consensus 86 ~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv 165 (407)
T PRK00844 86 PVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVI 165 (407)
T ss_pred ECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEE
Confidence 211 1579999999999999543323699999999999999999999998888888776 466889999
Q ss_pred EEcCCCCcEEEEeecCCCCC-------CCeEEEEEEEEChhhh-hhccC------CCCCcccchHHHHHhcCceEEEee-
Q 018327 146 VMEESTGKVEKFVEKPKLFV-------GNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEGKLFAMVL- 210 (358)
Q Consensus 146 ~~d~~~~~v~~~~ek~~~~~-------~~~~~~Giy~~~~~~l-~~l~~------~~~~~~~d~l~~l~~~~~v~~~~~- 210 (358)
..|++ ++|..|.|||.... +.++++|+|+|++++| +.+.. ...++..|+++.+++++.+++|.+
T Consensus 166 ~~d~~-g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~ 244 (407)
T PRK00844 166 EVDPD-GRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFS 244 (407)
T ss_pred EECCC-CCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEEEEEcc
Confidence 99986 89999999986432 5689999999999986 44542 334566799999999989999865
Q ss_pred -----------cCeEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEEC-CC--cEECCCcEECCCC
Q 018327 211 -----------PGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIG-EG--CLIGPDVAVGPGC 276 (358)
Q Consensus 211 -----------~~~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~-~~--~~i~~~~~ig~~~ 276 (358)
+++|.|+++|++|+++++.+++..... ....+...+.+.....+.+.+. .. ..+.++++||++|
T Consensus 245 ~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~ 322 (407)
T PRK00844 245 TNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVF--NLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGS 322 (407)
T ss_pred cccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCcc--ccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCC
Confidence 589999999999999999999643221 0001111111111111112211 11 1233578888888
Q ss_pred EECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327 277 VVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 338 (358)
Q Consensus 277 ~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 338 (358)
.|+ ++.|.+|+|+++|.|+++|.|.+|+|+++|.||+++.|.+ |+|+++++|++++.+.+
T Consensus 323 ~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~-~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 323 IIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR-AILDKNVVVPPGATIGV 382 (407)
T ss_pred EEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe-eEECCCCEECCCCEECC
Confidence 887 7888888888888888888888888888888888888877 88888888888888765
No 7
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=5e-50 Score=369.05 Aligned_cols=336 Identities=28% Similarity=0.465 Sum_probs=279.7
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEecc-ChHHHHHHHHhhhhccCcEEEEecc
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
+|||||||.|+||+|+|..+||+|+|++|+|||+|+|+++.++|++++++++++ ..+.+.+|+.+ ...+++.+.+..+
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 79 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-GERFGAKITYIVQ 79 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-ccccCceEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999 88899999976 2455677777767
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKF 157 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~ 157 (358)
..+.|++++++.+++.+ ..+ +|++++||.+++.++.++++.|.++++++++++ +++..|+++..|++ ++|..+
T Consensus 80 ~~~~G~~~al~~a~~~l--~~~-~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~-~~v~~~ 155 (353)
T TIGR01208 80 GEPLGLAHAVYTARDFL--GDD-DFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDG-KRILKL 155 (353)
T ss_pred CCCCCHHHHHHHHHHhc--CCC-CEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCC-CcEEEE
Confidence 77889999999999998 333 899999999999999999999998888888777 66778998888754 789999
Q ss_pred eecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327 158 VEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYL 231 (358)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~~l 231 (358)
.|||....+++.++|+|+|++.+++.+.+. ......++++.+++++ ++++|.++++|.|++||+||+++++.++
T Consensus 156 ~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll 235 (353)
T TIGR01208 156 VEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLIL 235 (353)
T ss_pred EECCCCCCccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHH
Confidence 999987778899999999999888877421 1223367889998876 5999999999999999999999999999
Q ss_pred HhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCC
Q 018327 232 DSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHS 310 (358)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~ 310 (358)
++...... .+.+.+.+.++++|++++.| .+++|.+++.||++|.|+ ++.|. +|+|+++|.|+ +|.|.+|+|++++
T Consensus 236 ~~~~~~~~-~i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~ 311 (353)
T TIGR01208 236 DEVEREVQ-GVDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIE-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDES 311 (353)
T ss_pred hhcccccC-CcCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEc-CcEECCCCEECCCCEEe-eeEEEeeEEcCCC
Confidence 75433222 25667788888888888888 777777788888888887 44555 78888888886 6778889999999
Q ss_pred EECCcc-EEcCccEECCCcEECCceEEcC---cEEccCcee
Q 018327 311 TVGQWA-RVENMTILGEDVHVCDEIYSNG---GVVLPHKEI 347 (358)
Q Consensus 311 ~ig~~~-~i~~~~~i~~~~~i~~~~~i~~---~~v~~~~~i 347 (358)
.|+.+. .+.+ ++++++++|+.++.+.+ ..++.++.|
T Consensus 312 ~i~~~~~~~~~-~ii~~~~~i~~~~~~~~~~~~~~g~~~~~ 351 (353)
T TIGR01208 312 VIEGVQARIVD-SVIGKKVRIKGNRRRPGDLRLTIGDYSQV 351 (353)
T ss_pred EEcCCcceeec-CEEcCCCEECCCcccccccceEEcCCcee
Confidence 998884 7765 99999999999988863 344555444
No 8
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=6.9e-50 Score=375.15 Aligned_cols=316 Identities=23% Similarity=0.375 Sum_probs=230.9
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhh--cc--C-cE
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA--KL--G-IK 74 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~--~~--~-~~ 74 (358)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++++|++++..+.+++|+.+... .+ + +.
T Consensus 4 ~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~~ 83 (429)
T PRK02862 4 VLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFVE 83 (429)
T ss_pred EEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEEE
Confidence 4799999999999999999999999999999 99999999999999999999999998999999975111 11 2 22
Q ss_pred EEEeccCC-----cCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCeee
Q 018327 75 IICSQETE-----PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGV 144 (358)
Q Consensus 75 i~~~~~~~-----~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 144 (358)
+.+..+.. ..|++++++++++.+....+++|++++||.+++.++.++++.|.+.++++++++ +++..||+
T Consensus 84 i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~ 163 (429)
T PRK02862 84 VLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGL 163 (429)
T ss_pred EeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceE
Confidence 22222211 279999999999998543335899999999999999999999998888888776 34678999
Q ss_pred EEEcCCCCcEEEEeecCCCC---------------------CCCeEEEEEEEEChhhhhhc-cCC--CCCcccchHHHHH
Q 018327 145 VVMEESTGKVEKFVEKPKLF---------------------VGNKINAGIYLLNPAVLDRI-ELR--PTSIEKEVFPKIA 200 (358)
Q Consensus 145 ~~~d~~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~~l-~~~--~~~~~~d~l~~l~ 200 (358)
+..|++ +++..|.|||... ...++++|+|+|++++|..+ .+. ..++..+++++++
T Consensus 164 i~~d~~-g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~ 242 (429)
T PRK02862 164 MKTDDD-GRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAI 242 (429)
T ss_pred EEECCC-CcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHh
Confidence 999876 8999999998631 23588999999999999644 332 2456679999999
Q ss_pred hcCceEEEeecCeEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEec----------------ceEECCCCEECCCc
Q 018327 201 LEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVG----------------NVLVHESAQIGEGC 264 (358)
Q Consensus 201 ~~~~v~~~~~~~~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~----------------~~~i~~~~~i~~~~ 264 (358)
+++++++|..+++|.|++||++|+++|+.++........ ...+...+.. +++|++++.| +++
T Consensus 243 ~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~-~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~~~i-~~~ 320 (429)
T PRK02862 243 RDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFS-FYDEKAPIYTRARYLPPSKLLDATITESIIAEGCII-KNC 320 (429)
T ss_pred ccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCccc-ccCCCCceeccCCCCCCccccccEEEeCEECCCCEE-CCc
Confidence 888999999999999999999999999988732211100 1111222222 2455555555 445
Q ss_pred EECCCcEECCCCEECCCcEEeeeEECC-------------------CcEECCCcEEeccEEccCCEECCccEEcC
Q 018327 265 LIGPDVAVGPGCVVESGVRLSRCTVMR-------------------GVRIKKHACISSSIIGWHSTVGQWARVEN 320 (358)
Q Consensus 265 ~i~~~~~ig~~~~ig~~~~i~~~~i~~-------------------~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 320 (358)
.|. +|+||++|+||++|+|.+|+|+. ++.||++|+|.+++|+++|.||+++++.+
T Consensus 321 ~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~ 394 (429)
T PRK02862 321 SIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVN 394 (429)
T ss_pred EEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEec
Confidence 553 45555555555555555555543 35555555555555555555555555543
No 9
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.5e-49 Score=372.41 Aligned_cols=333 Identities=23% Similarity=0.344 Sum_probs=248.5
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcc-hHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHh-hh--h-ccCcEE
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKP-MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE--A-KLGIKI 75 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~p-li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~-~~--~-~~~~~i 75 (358)
|+|||||||.|+||+|+|..+||+|+|++|+| ||+|+|++|.++|+++++|++++..+.+.+|+.+ |. + ..+..+
T Consensus 16 ~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~i 95 (425)
T PRK00725 16 TLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFREELGEFV 95 (425)
T ss_pred eEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccccCCCCeE
Confidence 46999999999999999999999999999997 9999999999999999999999999999999975 21 0 111112
Q ss_pred EEe-------ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCee
Q 018327 76 ICS-------QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYG 143 (358)
Q Consensus 76 ~~~-------~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~ 143 (358)
.+. .+..+.|++++++++++++....+++|+|++||.+++.++.++++.|.++++++++++ +++..||
T Consensus 96 ~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG 175 (425)
T PRK00725 96 DLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFG 175 (425)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccce
Confidence 111 1223579999999999999543334899999999999999999999998888888876 4678999
Q ss_pred eEEEcCCCCcEEEEeecCCCC-------CCCeEEEEEEEEChhhhh-hccC------CCCCcccchHHHHHhcCceEEEe
Q 018327 144 VVVMEESTGKVEKFVEKPKLF-------VGNKINAGIYLLNPAVLD-RIEL------RPTSIEKEVFPKIALEGKLFAMV 209 (358)
Q Consensus 144 ~~~~d~~~~~v~~~~ek~~~~-------~~~~~~~Giy~~~~~~l~-~l~~------~~~~~~~d~l~~l~~~~~v~~~~ 209 (358)
++..|++ ++|..|.|||... .+.+.++|+|+|++++|. .|.+ ...++..|+++.+++++++++|.
T Consensus 176 ~v~~d~~-~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~ 254 (425)
T PRK00725 176 VMAVDEN-DRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHP 254 (425)
T ss_pred EEEECCC-CCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcEEEEE
Confidence 9999986 8999999998643 256899999999999874 4432 22356679999999999999998
Q ss_pred ec-----------CeEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEE---CCC--cEECCCcEEC
Q 018327 210 LP-----------GFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQI---GEG--CLIGPDVAVG 273 (358)
Q Consensus 210 ~~-----------~~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i---~~~--~~i~~~~~ig 273 (358)
++ ++|.|+++|++|+++++.++...... ........+.......+.+.+ +.+ +.+ .+|+||
T Consensus 255 ~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~--~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~-~~s~i~ 331 (425)
T PRK00725 255 FSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPEL--DLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMA-INSLVS 331 (425)
T ss_pred ecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchh--hccCCCCccccCCCCCCCCeEeccCCCCcceE-EeCEEc
Confidence 85 59999999999999999988532110 000011111111111111111 111 122 367777
Q ss_pred CCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCc
Q 018327 274 PGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG 339 (358)
Q Consensus 274 ~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~ 339 (358)
++|+| ++|.|.+|+|+++|.|+++|.|.+|+|+++|.||++++|.+ |+|+++++|++++.+++.
T Consensus 332 ~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~-~ii~~~~~i~~~~~i~~~ 395 (425)
T PRK00725 332 GGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRR-CVIDRGCVIPEGMVIGED 395 (425)
T ss_pred CCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEee-EEECCCCEECCCCEECCC
Confidence 77777 57777777777777777777777777777777777777766 777777777777777543
No 10
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=9.9e-50 Score=369.23 Aligned_cols=336 Identities=20% Similarity=0.303 Sum_probs=260.7
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChH-HHHHHHHhhhhccCcEE---
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEAKLGIKI--- 75 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~-~i~~~l~~~~~~~~~~i--- 75 (358)
|+|||||+|+|+||+|+|..+||||+|++|| |||+|+|++|.++|++++++++++..+ ++++|+.+ ...|++.+
T Consensus 3 ~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~-~~~~~~~~~~~ 81 (369)
T TIGR02092 3 MSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGS-GREWDLHRKRD 81 (369)
T ss_pred EEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhC-CCCCCcccccC
Confidence 7899999999999999999999999999999 999999999999999999999999876 99999975 23344432
Q ss_pred ---EEeccCC-c--CCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---c--CCCCee-
Q 018327 76 ---ICSQETE-P--LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---D--EPSKYG- 143 (358)
Q Consensus 76 ---~~~~~~~-~--~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~--~~~~~~- 143 (358)
.+..+.. . .|++.+++++++.+....+++|++++||.+++.++.+++++|.++++++|+++ + ++..||
T Consensus 82 ~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~ 161 (369)
T TIGR02092 82 GLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDT 161 (369)
T ss_pred cEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCc
Confidence 1222222 2 25666788888888422234899999999999999999999999888888886 2 457775
Q ss_pred eEEEcCCCCcEEEEeecCCCCCCCeEEEEEEEEChhhhhhc-c----CCCCCcccchHHHHHhcCceEEEeecCeEEecC
Q 018327 144 VVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-E----LRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG 218 (358)
Q Consensus 144 ~~~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~----~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~ 218 (358)
++..|++ +++..+.+++........++|+|+|+++.+..+ . .....+..++++.+++++.++++..+++|.|++
T Consensus 162 vv~~~~~-g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIg 240 (369)
T TIGR02092 162 ILRFDES-GKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKELNINAYEYTGYLANIN 240 (369)
T ss_pred EEEEcCC-CCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEEecCCceeEcC
Confidence 4556665 788877544333334578999999999876433 2 112233357888888778899999999999999
Q ss_pred CHHHHHHHHHHHHHhhcccCcccc-cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECC
Q 018327 219 QPRDYITGLRLYLDSLRKKSSLKL-ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297 (358)
Q Consensus 219 t~~dy~~a~~~~l~~~~~~~~~~~-~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~ 297 (358)
||++|+++++.+++.+.... .+ .....+.....+.+.+.|++++.| ++|+||++|+|+ +.|.+|+|+++|.|++
T Consensus 241 t~~~l~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~ 315 (369)
T TIGR02092 241 SVKSYYKANMDLLDPQNFQS--LFYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGK 315 (369)
T ss_pred CHHHHHHHHHHHhCCcchhh--hcCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECC
Confidence 99999999999887543211 11 111112111223356666677777 589999999997 3688999999999999
Q ss_pred CcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccC
Q 018327 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH 344 (358)
Q Consensus 298 ~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~ 344 (358)
+|.|.+|++++++.|++++.+.+ |+||++++|++++.+.+....|.
T Consensus 316 ~~~i~~sii~~~~~I~~~~~i~~-~ii~~~~~v~~~~~~~~~~~~~~ 361 (369)
T TIGR02092 316 DALIKNCIIMQRTVIGEGAHLEN-VIIDKDVVIEPNVKIAGTSEQPL 361 (369)
T ss_pred CCEEEeeEEeCCCEECCCCEEEE-EEECCCCEECCCCEeCCCCCccE
Confidence 99999999999999999999988 99999999999999977654443
No 11
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=5.3e-49 Score=370.20 Aligned_cols=317 Identities=22% Similarity=0.361 Sum_probs=254.8
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhh--------cc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA--------KL 71 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~--------~~ 71 (358)
|+|||||||+|+||+|+|..+||||+|++|+ |||+|+|+++.++|++++++++++..+++.+|+.+... ..
T Consensus 4 ~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 83 (436)
T PLN02241 4 VAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFGDG 83 (436)
T ss_pred eEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccCCC
Confidence 7899999999999999999999999999997 99999999999999999999999999999999985110 01
Q ss_pred CcEEEEeccC-----CcCCCchHHHHHHhhccCCC---CCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cC
Q 018327 72 GIKIICSQET-----EPLGTAGPLALARDKLIDDT---GEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DE 138 (358)
Q Consensus 72 ~~~i~~~~~~-----~~~g~~~sl~~~~~~i~~~~---~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~ 138 (358)
++.+.+..+. .+.|++++++.++.++++.. +++||+++||.+++.++.+++++|.++++++++++ ++
T Consensus 84 ~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~ 163 (436)
T PLN02241 84 FVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESR 163 (436)
T ss_pred CEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhh
Confidence 1333333232 36799999999887764321 34999999999999999999999999988888887 34
Q ss_pred CCCeeeEEEcCCCCcEEEEeecCCCCC---------------------CCeEEEEEEEEChhhhhhc-cC---CCCCccc
Q 018327 139 PSKYGVVVMEESTGKVEKFVEKPKLFV---------------------GNKINAGIYLLNPAVLDRI-EL---RPTSIEK 193 (358)
Q Consensus 139 ~~~~~~~~~d~~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~l-~~---~~~~~~~ 193 (358)
++.||++.+|++ ++|..+.|||.... .++.++|+|+|+++.|..+ .+ ...++..
T Consensus 164 ~~~ygvv~~d~~-~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~ 242 (436)
T PLN02241 164 ASDFGLMKIDDT-GRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGS 242 (436)
T ss_pred cCcceEEEECCC-CCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhH
Confidence 689999999876 89999999986432 3789999999999998644 32 2235667
Q ss_pred chHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHHHHHhhcc-----cCcc------cc----cCCcEEecceEECCC
Q 018327 194 EVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK-----KSSL------KL----ATGANIVGNVLVHES 257 (358)
Q Consensus 194 d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~~l~~~~~-----~~~~------~~----~~~~~i~~~~~i~~~ 257 (358)
|+++.++.++ ++++|.++++|.|+++|++|+++++.++..... .... .. -.++.+.+ +.|+++
T Consensus 243 dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~-s~I~~~ 321 (436)
T PLN02241 243 EIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITD-SIISHG 321 (436)
T ss_pred HHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEE-eEEcCC
Confidence 8999998874 699999999999999999999999999864311 0000 00 12334444 788899
Q ss_pred CEECCCcEECCCcEECCCCEECCCcEEeeeEECC----------------C---cEECCCcEEeccEEccCCEECCccEE
Q 018327 258 AQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMR----------------G---VRIKKHACISSSIIGWHSTVGQWARV 318 (358)
Q Consensus 258 ~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~----------------~---~~i~~~~~i~~~~i~~~~~ig~~~~i 318 (358)
+.|+ ++.|. +|+|+++|.||++|+|.+|+++. + +.|+++|.+.+++|+++|+||+++.+
T Consensus 322 ~~I~-~~~I~-~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i 399 (436)
T PLN02241 322 CFLR-ECKIE-HSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVI 399 (436)
T ss_pred cEEc-CeEEE-eeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEE
Confidence 9998 88885 88999999999999999887755 2 38999999999999999999999988
Q ss_pred cCc
Q 018327 319 ENM 321 (358)
Q Consensus 319 ~~~ 321 (358)
.++
T Consensus 400 ~~~ 402 (436)
T PLN02241 400 INK 402 (436)
T ss_pred ecc
Confidence 753
No 12
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=9.3e-49 Score=362.01 Aligned_cols=330 Identities=22% Similarity=0.362 Sum_probs=265.5
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhc-----cCcEEE
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAK-----LGIKII 76 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~-----~~~~i~ 76 (358)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++.|.++|+++++|++++..+++.+|+.+..+. ..+.+.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTLL 80 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEEEe
Confidence 69999999999999999999999999999 899999999999999999999999889999999752111 112222
Q ss_pred Ee-----ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCeeeEE
Q 018327 77 CS-----QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVVV 146 (358)
Q Consensus 77 ~~-----~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 146 (358)
.. .+..+.|++++++.+.+.+....+++|++++||.+++.++.++++.|.+++.++++++ +++..||++.
T Consensus 81 ~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~ 160 (361)
T TIGR02091 81 PAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQ 160 (361)
T ss_pred CCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEE
Confidence 11 1122479999999999988433334899999999999999999999988777777765 3567899999
Q ss_pred EcCCCCcEEEEeecCCCCCCC-------eEEEEEEEEChhhhh-hccC------CCCCcccchHHHHHhcCceEEEeecC
Q 018327 147 MEESTGKVEKFVEKPKLFVGN-------KINAGIYLLNPAVLD-RIEL------RPTSIEKEVFPKIALEGKLFAMVLPG 212 (358)
Q Consensus 147 ~d~~~~~v~~~~ek~~~~~~~-------~~~~Giy~~~~~~l~-~l~~------~~~~~~~d~l~~l~~~~~v~~~~~~~ 212 (358)
.|++ +++..+.|||..+.+. +.++|+|+|+++++. .+.. ...++..++++.+++++++++|.+++
T Consensus 161 ~d~~-~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~v~~~~~~~ 239 (361)
T TIGR02091 161 VDED-GRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAYLFSG 239 (361)
T ss_pred ECCC-CCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCceEEEeeCC
Confidence 9876 8999999998655555 899999999999874 4332 23345678999999999999999999
Q ss_pred eEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEE-ecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECC
Q 018327 213 FWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANI-VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMR 291 (358)
Q Consensus 213 ~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i-~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~ 291 (358)
+|.|++|+++|+++++.++....... ...+...+ .....+.+.+.+++++.+ +++.||++|+|+++ .|.+|+|++
T Consensus 240 ~w~digt~~~~~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~ 315 (361)
T TIGR02091 240 YWRDVGTIDSFWEANMDLVSVVPPFD--LYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGI 315 (361)
T ss_pred EEEECCCHHHHHHHHHHHhCCCchhh--ccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-EEEccEECC
Confidence 99999999999999999986432211 11111112 112344555666666655 58899999999987 888999999
Q ss_pred CcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327 292 GVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 338 (358)
Q Consensus 292 ~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 338 (358)
+|.|+++|+|.+|++++++.||.++.+.+ |+||++++|++++.+.+
T Consensus 316 ~~~I~~~~~i~~sii~~~~~v~~~~~l~~-~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 316 RVRIGSGSTVEDSVIMGDVGIGRGAVIRN-AIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CCEECCCCEEeeeEEeCCCEECCCCEEee-eEECCCCEECCCCEeCC
Confidence 99999999999999999999999999976 99999999999988753
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-46 Score=331.03 Aligned_cols=340 Identities=26% Similarity=0.369 Sum_probs=290.3
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|.+||||||+|+||+. .+||-|-|++||||++|.|+.....+.+++++|++++.+.+++.+.+. ..+.+..|
T Consensus 3 ~~~vILAAGkGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-----~~v~~v~Q 74 (460)
T COG1207 3 LSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-----DDVEFVLQ 74 (460)
T ss_pred ceEEEEecCCCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-----cCceEEEe
Confidence 5799999999999999 899999999999999999999999999999999999999999999863 14677889
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
.++.||+++++++.+.+.+..+.++|+++||+ +....|+++++.|.+.+..+++++ ++|..||.+..+++ ++|.
T Consensus 75 ~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~-g~V~ 153 (460)
T COG1207 75 EEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGN-GEVT 153 (460)
T ss_pred cccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCC-CcEE
Confidence 99999999999999999544444799999999 344558999999998888888887 99999999999886 8999
Q ss_pred EEeecCC----CCCCCeEEEEEEEEChhhhhhcc----CC---CCCcccchHHHHHhcCc-eEEEeecC--eEEecCCHH
Q 018327 156 KFVEKPK----LFVGNKINAGIYLLNPAVLDRIE----LR---PTSIEKEVFPKIALEGK-LFAMVLPG--FWMDIGQPR 221 (358)
Q Consensus 156 ~~~ek~~----~~~~~~~~~Giy~~~~~~l~~l~----~~---~~~~~~d~l~~l~~~~~-v~~~~~~~--~~~di~t~~ 221 (358)
++.|... +..-..+++|+|+|..+.|..+. .+ .+++..|++..+-.++. +.++..+. ...-+++..
T Consensus 154 ~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~ 233 (460)
T COG1207 154 AIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRV 233 (460)
T ss_pred EEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHH
Confidence 9998764 23455799999999987665442 22 34566788888766655 77777664 356789999
Q ss_pred HHHHHHHHHHHhhccc-----CcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEEC
Q 018327 222 DYITGLRLYLDSLRKK-----SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 296 (358)
Q Consensus 222 dy~~a~~~~l~~~~~~-----~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~ 296 (358)
++-++.+.+..+.... ..-.-+....|.+.+.|++++.|.++++|.+++.||++|+||++|+|.||.|++++.|.
T Consensus 234 qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~ 313 (460)
T COG1207 234 QLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIK 313 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEE
Confidence 9988887776654432 11123677888899999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceecc
Q 018327 297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS 349 (358)
Q Consensus 297 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~ 349 (358)
..++|++|.|+++|.||+++++.|++.++++++||+-+.++++.++.++.+.+
T Consensus 314 ~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~H 366 (460)
T COG1207 314 AYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGH 366 (460)
T ss_pred ecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccc
Confidence 99999999999999999999999999999999999999999999887766544
No 14
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=6.9e-46 Score=352.79 Aligned_cols=330 Identities=23% Similarity=0.374 Sum_probs=272.7
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|+|||||||.|+||++ ..||+|+|++|+|||+|+|+++.++|++++++++++..+++.+++.+. ..+.+..+
T Consensus 4 ~~avIlAaG~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i~~~~~ 75 (459)
T PRK14355 4 LAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDVSFALQ 75 (459)
T ss_pred ceEEEEcCCCCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----CceEEEec
Confidence 5799999999999986 789999999999999999999999999999999999888898888752 13445556
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
..+.|++++++++++.+++. +++|++++||. +.+.+++.+++.|.+.+.+++++. .++..|+.+..|++ +++.
T Consensus 76 ~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~-g~v~ 153 (459)
T PRK14355 76 EEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDAD-GRVL 153 (459)
T ss_pred CCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCC-CCEE
Confidence 67789999999999998532 34899999998 446678999999988777777665 56778898888876 8999
Q ss_pred EEeecCCC----CCCCeEEEEEEEEChhhh-hhccC------CCCCcccchHHHHHhcC-ceEEEeecCe--EEecCCHH
Q 018327 156 KFVEKPKL----FVGNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPR 221 (358)
Q Consensus 156 ~~~ek~~~----~~~~~~~~Giy~~~~~~l-~~l~~------~~~~~~~d~l~~l~~~~-~v~~~~~~~~--~~di~t~~ 221 (358)
.+.|||.. ..+++.++|+|+|+++.+ +.+.. ....+..|+++.+++++ ++.+|.++++ |.++++|+
T Consensus 154 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~ 233 (459)
T PRK14355 154 RIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRA 233 (459)
T ss_pred EEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHH
Confidence 99987632 134688999999999864 33421 12233468899999887 5999999887 99999999
Q ss_pred HHHHHHHHHHHhhccc----CcccccCC-cEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEEC
Q 018327 222 DYITGLRLYLDSLRKK----SSLKLATG-ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 296 (358)
Q Consensus 222 dy~~a~~~~l~~~~~~----~~~~~~~~-~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~ 296 (358)
+|+++++.++...... ....+.+. +.+.+++.|++++.|++++.|+++++||++|.|+.+|.|.+|+||++|+|+
T Consensus 234 ~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~ 313 (459)
T PRK14355 234 QLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVK 313 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEEC
Confidence 9999988666543221 11234555 468899999999999999999999999999999999999999999999999
Q ss_pred CCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcE
Q 018327 297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV 340 (358)
Q Consensus 297 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~ 340 (358)
++|++.+++|++++.||+++.+.+++.|+++++||+++.++...
T Consensus 314 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ 357 (459)
T PRK14355 314 AGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIV 357 (459)
T ss_pred CCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCE
Confidence 99999999999999999999999999999999988876544433
No 15
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.1e-44 Score=344.28 Aligned_cols=337 Identities=21% Similarity=0.276 Sum_probs=266.5
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
+.|||||||.|+||++ .+||+|+|++|+|||+|+|+.|.+++++++++++++..+.+.+++.+.. ..+.+..+
T Consensus 5 ~~avILAaG~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----~~~~~~~~ 77 (482)
T PRK14352 5 TAVIVLAAGAGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA----PEVDIAVQ 77 (482)
T ss_pred ceEEEEcCCCCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC----CccEEEeC
Confidence 4699999999999997 6899999999999999999999999999999999998788888876531 12344556
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
..+.|++++++.+++.+....+++|++++||. + ...++.++++.|.+.+..++++. .++..|+.+..|++ ++|.
T Consensus 78 ~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~-g~V~ 156 (482)
T PRK14352 78 DEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQD-GEVT 156 (482)
T ss_pred CCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCC-CCEE
Confidence 67789999999999988432334799999998 3 44569999999887776666665 67788999888776 8999
Q ss_pred EEeecCCCC----CCCeEEEEEEEEChhhhhhcc----CC---CCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHH
Q 018327 156 KFVEKPKLF----VGNKINAGIYLLNPAVLDRIE----LR---PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDY 223 (358)
Q Consensus 156 ~~~ek~~~~----~~~~~~~Giy~~~~~~l~~l~----~~---~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy 223 (358)
++.|||... ..+++++|+|+|+++.|..+. .. ...+..|+++++++.+ ++++|.++++|.|++++++|
T Consensus 157 ~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~ 236 (482)
T PRK14352 157 AIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRV 236 (482)
T ss_pred EEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHH
Confidence 999998743 245789999999999986542 11 2234478999999887 59999999999999999888
Q ss_pred ------HHHHHHHHHhhcccCccccc-CCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEEC
Q 018327 224 ------ITGLRLYLDSLRKKSSLKLA-TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 296 (358)
Q Consensus 224 ------~~a~~~~l~~~~~~~~~~~~-~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~ 296 (358)
..+++.++..+...-...+. +.+++.++++|++++.|++++.|.++++||++|.|+++|+|.+++||++|.|+
T Consensus 237 ~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~ 316 (482)
T PRK14352 237 QLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVV 316 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEe
Confidence 44555555444333222233 36788899999999999999999999999999999999999999999999987
Q ss_pred CCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCce
Q 018327 297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE 346 (358)
Q Consensus 297 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~ 346 (358)
. +.+.+++|++++.||+++.+.++++||+++.+|..+.+.++.+.+++.
T Consensus 317 ~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~ 365 (482)
T PRK14352 317 R-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTK 365 (482)
T ss_pred e-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcE
Confidence 4 788888888888888888888778888877777665554444444443
No 16
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-46 Score=322.24 Aligned_cols=338 Identities=22% Similarity=0.382 Sum_probs=262.6
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEecc-ChHHHHHHHHhhhh--ccCcEEEE
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEA--KLGIKIIC 77 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~--~~~~~i~~ 77 (358)
|+||++|+|.|+||..++++.||||||++|+|||+|.|+||.++|+++++|++.+ ....++..+.+... .....+.+
T Consensus 10 fqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~~v~i 89 (433)
T KOG1462|consen 10 FQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKRPDYVEI 89 (433)
T ss_pred hhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccccccEEEe
Confidence 5899999999999999999999999999999999999999999999999999997 34556666654111 11112222
Q ss_pred e-ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe--------------cCCCCe
Q 018327 78 S-QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV--------------DEPSKY 142 (358)
Q Consensus 78 ~-~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~ 142 (358)
. ..+...|++++++.....+ ..+ +||++.||.+++.++..+++.|++.++..++++ +..+..
T Consensus 90 p~~~~~d~gtadsLr~Iy~ki--kS~-DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~ 166 (433)
T KOG1462|consen 90 PTDDNSDFGTADSLRYIYSKI--KSE-DFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQAR 166 (433)
T ss_pred ecccccccCCHHHHhhhhhhh--ccC-CEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCccccccccc
Confidence 1 1233569999999999999 444 999999999999999999999998776655554 222344
Q ss_pred eeEEEcCCCCcEEEEeec-----------------CC-CCCCCeEEEEEEEEChhhhhhccC--CCCCcccchHHHHHhc
Q 018327 143 GVVVMEESTGKVEKFVEK-----------------PK-LFVGNKINAGIYLLNPAVLDRIEL--RPTSIEKEVFPKIALE 202 (358)
Q Consensus 143 ~~~~~d~~~~~v~~~~ek-----------------~~-~~~~~~~~~Giy~~~~~~l~~l~~--~~~~~~~d~l~~l~~~ 202 (358)
.++..+++|+|+...... |+ ...+++.++++|+|+++++++|.+ ...+|+.+++|+++++
T Consensus 167 d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~P~lvkk 246 (433)
T KOG1462|consen 167 DVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFLPYLVKK 246 (433)
T ss_pred ceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecccccchhhhh
Confidence 566667776776554321 11 235678899999999999999974 4567888999888765
Q ss_pred Cc---------------------------------eEEEeec--CeEEecCCHHHHHHHHH--HHHHhhcccC---cccc
Q 018327 203 GK---------------------------------LFAMVLP--GFWMDIGQPRDYITGLR--LYLDSLRKKS---SLKL 242 (358)
Q Consensus 203 ~~---------------------------------v~~~~~~--~~~~di~t~~dy~~a~~--~~l~~~~~~~---~~~~ 242 (358)
+. .++|..+ .-+.+++|.-.|+++|+ .+. ++.+.. ....
T Consensus 247 Q~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~-~l~~e~~~~k~~~ 325 (433)
T KOG1462|consen 247 QFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLK-KLCSEAKFVKNYV 325 (433)
T ss_pred hhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHH-Hhccccccccchh
Confidence 43 2233332 35779999999999994 333 332211 1112
Q ss_pred cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCcc
Q 018327 243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT 322 (358)
Q Consensus 243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~ 322 (358)
...+.+.-.+++++++.|++++.| ..|+||++|.||+.++|.+|++++|+.||+++.|++|+||++++||+++.+.+ |
T Consensus 326 ~~~~l~g~d~iv~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~n-C 403 (433)
T KOG1462|consen 326 KKVALVGADSIVGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKN-C 403 (433)
T ss_pred hheeccchhhccCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeee-e
Confidence 233556678888999999988888 49999999999999999999999999999999999999999999999999999 9
Q ss_pred EECCCcEECCceEEcCcEEccC
Q 018327 323 ILGEDVHVCDEIYSNGGVVLPH 344 (358)
Q Consensus 323 ~i~~~~~i~~~~~i~~~~v~~~ 344 (358)
+||.+-+|.+.....|.++..+
T Consensus 404 ~Ig~~yvVeak~~~~~ev~~~~ 425 (433)
T KOG1462|consen 404 IIGPGYVVEAKGKHGGEVLVSN 425 (433)
T ss_pred EecCCcEEcccccccccEeecc
Confidence 9999999999988888777554
No 17
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.9e-44 Score=343.07 Aligned_cols=331 Identities=21% Similarity=0.328 Sum_probs=262.7
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|+|||||||.|+||++ .+||+|+|++|+|||+|+|++|.++|++++++++++..+.+++++.. .+ +.++.+
T Consensus 8 ~~avILAaG~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~----~~--i~~v~~ 78 (481)
T PRK14358 8 LDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG----SG--VAFARQ 78 (481)
T ss_pred ceEEEECCCCCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc----CC--cEEecC
Confidence 6899999999999997 68999999999999999999999999999999999988888888763 13 444556
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
..+.|++++++.+++.+.... ++|++++||. +.+.++++++++|.++++++++++ +++..||++..|++ ++|.
T Consensus 79 ~~~~Gt~~al~~~~~~l~~~~-~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~-g~v~ 156 (481)
T PRK14358 79 EQQLGTGDAFLSGASALTEGD-ADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGAD-GAVE 156 (481)
T ss_pred CCcCCcHHHHHHHHHHhhCCC-CcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCC-CCEE
Confidence 667899999999998884323 3799999998 445679999999988888887776 66788999999986 8999
Q ss_pred EEeecCCCC----CCCeEEEEEEEECh---hhhhhccCC---CCCcccchHHHHHhcCc-eEEEeecCeEEecCCHHHHH
Q 018327 156 KFVEKPKLF----VGNKINAGIYLLNP---AVLDRIELR---PTSIEKEVFPKIALEGK-LFAMVLPGFWMDIGQPRDYI 224 (358)
Q Consensus 156 ~~~ek~~~~----~~~~~~~Giy~~~~---~~l~~l~~~---~~~~~~d~l~~l~~~~~-v~~~~~~~~~~di~t~~dy~ 224 (358)
.|.|||... .+++.++|+|+|++ ++++++... ...+..|+++.+++++. +++|...++|..++.-.+|+
T Consensus 157 ~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~ 236 (481)
T PRK14358 157 RIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAG 236 (481)
T ss_pred EEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHH
Confidence 999998643 24578999999994 455565432 12334688999988874 88998888777776666554
Q ss_pred HHHHH-HHHhhcc-----cCcccccCCc-EEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECC
Q 018327 225 TGLRL-YLDSLRK-----KSSLKLATGA-NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297 (358)
Q Consensus 225 ~a~~~-~l~~~~~-----~~~~~~~~~~-~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~ 297 (358)
.+++. ++..... .......+.+ .+.++++||+++.|+++++|.+++.||++|.|+++|.|.+|+|+++|.|++
T Consensus 237 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~ 316 (481)
T PRK14358 237 LAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKP 316 (481)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEee
Confidence 44432 3321111 1111223333 357889999999999999999899999999999999999999999999999
Q ss_pred CcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEc
Q 018327 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL 342 (358)
Q Consensus 298 ~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~ 342 (358)
+++|.+++||+++.||+++.+..+++||+++.|++++.++++.+.
T Consensus 317 ~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~ 361 (481)
T PRK14358 317 HSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLD 361 (481)
T ss_pred cceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceec
Confidence 999999999999999999999888999999999997776554443
No 18
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.5e-44 Score=341.58 Aligned_cols=337 Identities=20% Similarity=0.286 Sum_probs=268.4
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|.|||||||+|+||++ .+||+|+|++|+|||+|++++|...+++++++++++..+.+.+++.+. ++ .++.+
T Consensus 6 ~~aiILAaG~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----~~--~~v~~ 76 (456)
T PRK14356 6 TGALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE----DA--RFVLQ 76 (456)
T ss_pred eeEEEEcCCCCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc----Cc--eEEEc
Confidence 4699999999999984 799999999999999999999999999999999999878777776531 23 33445
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-e-eccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
..+.|++++++.+++.+++...+++++++||. + ...+++.+++.+. +.+++++. .++..||.+.. ++ ++|.
T Consensus 77 ~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~g~v~~-~~-g~V~ 152 (456)
T PRK14356 77 EQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPDPGAYGRVVR-RN-GHVA 152 (456)
T ss_pred CCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCCCCCceEEEE-cC-CeEE
Confidence 66789999999999988543335899999998 3 3455888888775 44555555 67788998876 34 8999
Q ss_pred EEeecCCC------CCCCeEEEEEEEEChhhhhhccC-------CCCCcccchHHHHHhcC-ceEEEeecC--eEEecCC
Q 018327 156 KFVEKPKL------FVGNKINAGIYLLNPAVLDRIEL-------RPTSIEKEVFPKIALEG-KLFAMVLPG--FWMDIGQ 219 (358)
Q Consensus 156 ~~~ek~~~------~~~~~~~~Giy~~~~~~l~~l~~-------~~~~~~~d~l~~l~~~~-~v~~~~~~~--~~~di~t 219 (358)
.+.|||.. +.+.+.++|+|+|++++++.+.+ ....+..++++.+.+.+ ++.++...+ .|.+++|
T Consensus 153 ~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~t 232 (456)
T PRK14356 153 AIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNT 232 (456)
T ss_pred EEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcC
Confidence 99998752 24568899999999998764421 12233467888887665 488888765 6799999
Q ss_pred HHHHHHHHHHHHHhhccc---Ccccc--cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcE
Q 018327 220 PRDYITGLRLYLDSLRKK---SSLKL--ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVR 294 (358)
Q Consensus 220 ~~dy~~a~~~~l~~~~~~---~~~~~--~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~ 294 (358)
|+||.+++..+..+.... ....+ .+.+.+++++.|++++.|.+++.|.+++.||++|.|+++|.|.+|+|+++|.
T Consensus 233 p~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~ 312 (456)
T PRK14356 233 PAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGAT 312 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCE
Confidence 999999987766543321 01111 3566777888888888888888888899999999999999999999999999
Q ss_pred ECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceeccC
Q 018327 295 IKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSS 350 (358)
Q Consensus 295 i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~ 350 (358)
|+++|.|.+++||++|.||++++|.+++++|++++||+++.++++.+.+++.+.+.
T Consensus 313 I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~ 368 (456)
T PRK14356 313 IHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHL 368 (456)
T ss_pred EeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEeccc
Confidence 99999999999999999999999998899999999999988887777777665543
No 19
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=1.3e-43 Score=337.70 Aligned_cols=330 Identities=24% Similarity=0.367 Sum_probs=257.5
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|+|||||||.|+||++ .+||+|+|++|+|||+|+++.+.++|++++++++++..+.+.+++.++ ++.+ ..+
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~----~i~~--~~~ 71 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR----DVNW--VLQ 71 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC----CcEE--EEc
Confidence 8999999999999997 799999999999999999999999999999999999888888888763 3333 345
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
..+.|++++++++++.+. .+++|++++||. +...+++.+++.|.+. ..++++ +++..|+.+..|++ +++.
T Consensus 72 ~~~~G~~~ai~~a~~~l~--~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~g~v~~d~~-g~v~ 146 (451)
T TIGR01173 72 AEQLGTGHAVLQALPFLP--DDGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLPDPTGYGRIIREND-GKVT 146 (451)
T ss_pred CCCCchHHHHHHHHHhcC--CCCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecCCCCCCCEEEEcCC-CCEE
Confidence 556799999999999984 234899999998 3455689999888664 244444 56677998888876 8999
Q ss_pred EEeecCCCC----CCCeEEEEEEEEChhhhhh-ccC---C---CCCcccchHHHHHhcC-ceEEEeecCe--EEecCCHH
Q 018327 156 KFVEKPKLF----VGNKINAGIYLLNPAVLDR-IEL---R---PTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPR 221 (358)
Q Consensus 156 ~~~ek~~~~----~~~~~~~Giy~~~~~~l~~-l~~---~---~~~~~~d~l~~l~~~~-~v~~~~~~~~--~~di~t~~ 221 (358)
.+.|||... .....++|+|+|+++.|.. +.. . ...+..++++.+++.+ .++.|..+++ |.++++|+
T Consensus 147 ~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~ 226 (451)
T TIGR01173 147 AIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRL 226 (451)
T ss_pred EEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHH
Confidence 999987532 2347899999999998543 322 1 1223358888888886 5889988887 89999999
Q ss_pred HHHHHHHHHHHhhccc-----CcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEEC
Q 018327 222 DYITGLRLYLDSLRKK-----SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 296 (358)
Q Consensus 222 dy~~a~~~~l~~~~~~-----~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~ 296 (358)
++.+++..+..+.... .....++...+.+++.|++++.|+++++|.++++||++|.|+++|.|.+++|+++|.|+
T Consensus 227 dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~ 306 (451)
T TIGR01173 227 QLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIK 306 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEe
Confidence 9988876554322211 00112345567788888888888888888888899999999999988889999999999
Q ss_pred CCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccC
Q 018327 297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH 344 (358)
Q Consensus 297 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~ 344 (358)
++|.|.+++|+++|.||+++.|.++++|+++++|++++.+.++.++.+
T Consensus 307 ~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~ 354 (451)
T TIGR01173 307 AYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKG 354 (451)
T ss_pred eecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCC
Confidence 899998888888888888888887788888888887766554444443
No 20
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-44 Score=326.63 Aligned_cols=338 Identities=20% Similarity=0.322 Sum_probs=264.9
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHh--hhhccCcEEEEe
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE--FEAKLGIKIICS 78 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~--~~~~~~~~i~~~ 78 (358)
++||+||.-+.+||+|+|...|++|||++|.|||+|+|+||.++|++.++|+|+.+..++++|+++ |...+...+..+
T Consensus 25 LqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v~ti 104 (673)
T KOG1461|consen 25 LQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIVVTI 104 (673)
T ss_pred eEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccceEEEE
Confidence 489999999999999999999999999999999999999999999999999999999999999996 554444334333
Q ss_pred ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhc-----CCeeEEEecCC-----CCeeeEEEc
Q 018327 79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAH-----GGEASIMVDEP-----SKYGVVVME 148 (358)
Q Consensus 79 ~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~~~~d 148 (358)
......+.+++++...+.-- ...+|++++||++++.+|.+++++|+.. +.-+|++++.. ...-.+.+|
T Consensus 105 ~s~~~~S~GDamR~id~k~l--itgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~avd 182 (673)
T KOG1461|consen 105 CSGESRSVGDAMRDIDEKQL--ITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIAVD 182 (673)
T ss_pred cCCCcCcHHHHHHHHHhcce--eecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEEEc
Confidence 33345666777776654321 1239999999999999999999999553 23356666222 333467788
Q ss_pred CCCCcEEEEee----cCC--------------CCCCCeEEEEEEEEChhhhhhccCCCCC-cccchHHHHHh----cCce
Q 018327 149 ESTGKVEKFVE----KPK--------------LFVGNKINAGIYLLNPAVLDRIELRPTS-IEKEVFPKIAL----EGKL 205 (358)
Q Consensus 149 ~~~~~v~~~~e----k~~--------------~~~~~~~~~Giy~~~~~~l~~l~~~~~~-~~~d~l~~l~~----~~~v 205 (358)
..|.++..+.+ +.. ..+.++.++++-+|+++++..|.+++.+ ...||...++. ..++
T Consensus 183 ~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNFDyq~r~DfV~GvL~~dilg~kI 262 (673)
T KOG1461|consen 183 SRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNFDYQTRDDFVRGVLVDDILGYKI 262 (673)
T ss_pred CCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcccceehhhhhhhhhhhhhcCCeE
Confidence 88889999875 110 1246788999999999999999876543 33566655543 3468
Q ss_pred EEEeecC--eEEecCCHHHHHHHHHHHHHhhcccCcc-----------------------cccCCcEEecceEECCCCEE
Q 018327 206 FAMVLPG--FWMDIGQPRDYITGLRLYLDSLRKKSSL-----------------------KLATGANIVGNVLVHESAQI 260 (358)
Q Consensus 206 ~~~~~~~--~~~di~t~~dy~~a~~~~l~~~~~~~~~-----------------------~~~~~~~i~~~~~i~~~~~i 260 (358)
+.+..+. |...+.+...|...+++++.+|....-+ .+...+.++.++.||.++.|
T Consensus 263 ~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~I 342 (673)
T KOG1461|consen 263 HVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKI 342 (673)
T ss_pred EEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccceehhhccccceEEecccccc
Confidence 8888775 8899999999999999999998752211 12345666678888888888
Q ss_pred CCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEc-Cc
Q 018327 261 GEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-GG 339 (358)
Q Consensus 261 ~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~ 339 (358)
|.+++|. ||+||.||.||.||+|.+|.||++|+||+||.|.+++|+++++|+.++.+.+||++|.++++|++..+. ++
T Consensus 343 g~g~~I~-NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns 421 (673)
T KOG1461|consen 343 GSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNS 421 (673)
T ss_pred cCCCeee-cceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeeeEeCCCccccccc
Confidence 8888885 889999999999999999999999999999999999999999999998888888888888888887774 43
Q ss_pred EE
Q 018327 340 VV 341 (358)
Q Consensus 340 ~v 341 (358)
.+
T Consensus 422 ~~ 423 (673)
T KOG1461|consen 422 KV 423 (673)
T ss_pred cc
Confidence 33
No 21
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.5e-44 Score=298.99 Aligned_cols=227 Identities=31% Similarity=0.549 Sum_probs=204.2
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEecc-ChHHHHHHHHhhhhccCcEEEEec
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
||+||||||.|+||+|+|...||+|+|+.+||||.|.|+.|+.+|+++|.||+++ +.+.+++++.+ .++|++++.|..
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGd-gs~~gv~itY~~ 79 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGD-GSDFGVDITYAV 79 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcC-ccccCcceEEEe
Confidence 9999999999999999999999999999999999999999999999999999999 56677777776 678899999999
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEE
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEK 156 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~ 156 (358)
|.++.|.++|+..+.+++ +++ +|++..||.++..++.++++.+.++.+++++++ ++|++||++++|++ +++..
T Consensus 80 Q~~p~GlA~Av~~a~~fv--~~~-~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~-~~v~~ 155 (286)
T COG1209 80 QPEPDGLAHAVLIAEDFV--GDD-DFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDED-GKVIG 155 (286)
T ss_pred cCCCCcHHHHHHHHHhhc--CCC-ceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCC-CcEEE
Confidence 999999999999999999 544 999999999887799999999998888888887 99999999999987 79999
Q ss_pred EeecCCCCCCCeEEEEEEEEChhhhhhccCCC-----CCcccchHHHHHhcCceE-EEeecCeEEecCCHHHHHHHHHHH
Q 018327 157 FVEKPKLFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIALEGKLF-AMVLPGFWMDIGQPRDYITGLRLY 230 (358)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~d~l~~l~~~~~v~-~~~~~~~~~di~t~~dy~~a~~~~ 230 (358)
+.|||..+.|+++.+|+|+|++++|+.+..-. ..-..|.++.++++|... .....|.|.|.+|++++++|+...
T Consensus 156 l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i 235 (286)
T COG1209 156 LEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFV 235 (286)
T ss_pred eEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHH
Confidence 99999999999999999999999999875432 222368899999998854 445667999999999999999888
Q ss_pred HH
Q 018327 231 LD 232 (358)
Q Consensus 231 l~ 232 (358)
+.
T Consensus 236 ~~ 237 (286)
T COG1209 236 RT 237 (286)
T ss_pred HH
Confidence 76
No 22
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.8e-42 Score=328.90 Aligned_cols=346 Identities=19% Similarity=0.273 Sum_probs=247.6
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
+.|||||||.|+||++ .+||+|+|++|||||+|++++|..++++++++++++..+++.+++.++ +..+.+..+
T Consensus 6 ~~aiILAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~~~~~~~~~ 78 (446)
T PRK14353 6 CLAIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI----APDAEIFVQ 78 (446)
T ss_pred ceEEEEcCCCCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc----CCCceEEEc
Confidence 4699999999999985 689999999999999999999999999999999999888888887653 222333345
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~-~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
..+.|++++++.+++.+.... ++|++++||. +.. ..++.+++.+ +.+.+++++. .++..|+.+..+ + ++|.
T Consensus 79 ~~~~G~~~sl~~a~~~l~~~~-~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~~~~~~~g~~~~~-~-g~v~ 154 (446)
T PRK14353 79 KERLGTAHAVLAAREALAGGY-GDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRAADPTGYGRLIVK-G-GRLV 154 (446)
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEeCCCCcceEEEEC-C-CeEE
Confidence 567799999999998884323 4899999998 443 4478888744 4455666555 566788887763 3 8999
Q ss_pred EEeecCCCC----CCCeEEEEEEEEChhhh-hhccC------CCCCcccchHHHHHhcCc-eEEEeec-CeEEecCCHHH
Q 018327 156 KFVEKPKLF----VGNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEGK-LFAMVLP-GFWMDIGQPRD 222 (358)
Q Consensus 156 ~~~ek~~~~----~~~~~~~Giy~~~~~~l-~~l~~------~~~~~~~d~l~~l~~~~~-v~~~~~~-~~~~di~t~~d 222 (358)
.+.|||... .+.+.++|+|.|+++.| +.+.. ....+..++++.+++.+. ++.+..+ +.|.+++||+|
T Consensus 155 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~d 234 (446)
T PRK14353 155 AIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAE 234 (446)
T ss_pred EEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHH
Confidence 999987531 23678999999998765 33321 122334577888887765 8888876 46999999999
Q ss_pred HHHHHHHHHHhh-----ccc------------CcccccCCcEEecceEECCCCEECCCcEECC-----CcEECCCCEECC
Q 018327 223 YITGLRLYLDSL-----RKK------------SSLKLATGANIVGNVLVHESAQIGEGCLIGP-----DVAVGPGCVVES 280 (358)
Q Consensus 223 y~~a~~~~l~~~-----~~~------------~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~ig~ 280 (358)
|.+++..+..+. ... ....+++++.+.++++|++++.|+++|.|++ +++||++|+||+
T Consensus 235 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~ 314 (446)
T PRK14353 235 LAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGP 314 (446)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECC
Confidence 999987554331 000 1223455556666666666666666666654 577888888888
Q ss_pred CcEEe-eeEECCCcEECCCcEEecc-----------------EEccCCEECCccEE-------cCccEECCCcEECCc--
Q 018327 281 GVRLS-RCTVMRGVRIKKHACISSS-----------------IIGWHSTVGQWARV-------ENMTILGEDVHVCDE-- 333 (358)
Q Consensus 281 ~~~i~-~~~i~~~~~i~~~~~i~~~-----------------~i~~~~~ig~~~~i-------~~~~~i~~~~~i~~~-- 333 (358)
++.|. +++||++|.|+++|.+.++ +||++|.||.++.+ ..+++||+++.||++
T Consensus 315 ~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~ 394 (446)
T PRK14353 315 YARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSA 394 (446)
T ss_pred CeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCE
Confidence 88887 7888888888888776543 45555566554332 113444444444444
Q ss_pred ----eEEc-CcEEccCceeccCCCCCccc
Q 018327 334 ----IYSN-GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 334 ----~~i~-~~~v~~~~~i~~~~~~~~~~ 357 (358)
+.|+ ++.+++++.|.+++|+++++
T Consensus 395 i~~~~~Ig~~~~ig~~s~v~~~v~~~~~~ 423 (446)
T PRK14353 395 LVAPVTIGDGAYIASGSVITEDVPDDALA 423 (446)
T ss_pred EeCCCEECCCCEECCCCEECccCCCCCEE
Confidence 4453 67778899999999998776
No 23
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.2e-42 Score=325.98 Aligned_cols=341 Identities=19% Similarity=0.293 Sum_probs=235.0
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|+|||||||.|+||++ .+||+|+|++|+|||+|+++.+.++ +++++|++++..+++.+++.+.. .++.+.+...
T Consensus 3 ~~aiIlAaG~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~--~~v~~~~~~~ 76 (430)
T PRK14359 3 LSIIILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF--PGVIFHTQDL 76 (430)
T ss_pred ccEEEEcCCCCccCCC---CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC--CceEEEEecC
Confidence 4699999999999997 7999999999999999999999987 78999999999899999887631 2344444333
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKF 157 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~ 157 (358)
....|++++++++.. . .++|++++||..+. ....++.+.+.++++++.+ +++..|+.+..| + +++..+
T Consensus 77 ~~~~gt~~al~~~~~----~-~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~d-~-g~v~~i 147 (430)
T PRK14359 77 ENYPGTGGALMGIEP----K-HERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLADPKGYGRVVIE-N-GQVKKI 147 (430)
T ss_pred ccCCCcHHHHhhccc----C-CCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCCCccCcEEEEc-C-CeEEEE
Confidence 445788888876321 2 24899999999432 2344555555566666655 567788887765 3 899999
Q ss_pred eecCCCC----CCCeEEEEEEEEChhhhhhccCC-------CCCcccchHHHHHhcC-ceEEEeec-CeEEecCCHHHHH
Q 018327 158 VEKPKLF----VGNKINAGIYLLNPAVLDRIELR-------PTSIEKEVFPKIALEG-KLFAMVLP-GFWMDIGQPRDYI 224 (358)
Q Consensus 158 ~ek~~~~----~~~~~~~Giy~~~~~~l~~l~~~-------~~~~~~d~l~~l~~~~-~v~~~~~~-~~~~di~t~~dy~ 224 (358)
.|+|... ...+.++|+|+|++++|+.+... ...+..|+++.+++.+ ++..+..+ ++|.|+++|+||.
T Consensus 148 ~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~ 227 (430)
T PRK14359 148 VEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELA 227 (430)
T ss_pred EECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHH
Confidence 9887522 24578999999999999865321 2234467888888774 58888886 5899999999999
Q ss_pred HHHHHHHHhhcccC-----------cccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEE---------------
Q 018327 225 TGLRLYLDSLRKKS-----------SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVV--------------- 278 (358)
Q Consensus 225 ~a~~~~l~~~~~~~-----------~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i--------------- 278 (358)
+++..+..+..... ....++++.+.+++.+++++.|++++.|+ +++||++|.|
T Consensus 228 ~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~i~~~~ig~~~~ 306 (430)
T PRK14359 228 KAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEESIIENSDVGPLAH 306 (430)
T ss_pred HHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEeccEEeCCEECCCCE
Confidence 99876655433211 22245667777777777777776665554 4444444444
Q ss_pred -CCCcEEeeeEECCCc----------EECCCcEEeccEEccCCEECCccEEcC-------ccEECCCcEECCce------
Q 018327 279 -ESGVRLSRCTVMRGV----------RIKKHACISSSIIGWHSTVGQWARVEN-------MTILGEDVHVCDEI------ 334 (358)
Q Consensus 279 -g~~~~i~~~~i~~~~----------~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~i~~~~~i~~~~------ 334 (358)
++++.|.+|.||++| +|++.+.|.+|+||++|.||.++.+.+ +++||+++.||.++
T Consensus 307 i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~ 386 (430)
T PRK14359 307 IRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPV 386 (430)
T ss_pred ECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCc
Confidence 444444444444444 444444555566666667776644332 14455555555554
Q ss_pred EEc-CcEEccCceeccCCCCCccc
Q 018327 335 YSN-GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 335 ~i~-~~~v~~~~~i~~~~~~~~~~ 357 (358)
.|+ ++.+++++.|.+|+|+++++
T Consensus 387 ~ig~~~~i~~g~~v~~~v~~~~~~ 410 (430)
T PRK14359 387 NIEDNVLIAAGSTVTKDVPKGSLA 410 (430)
T ss_pred EECCCCEECCCCEEccccCCCcEE
Confidence 453 57789999999999998775
No 24
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.2e-42 Score=327.58 Aligned_cols=317 Identities=23% Similarity=0.346 Sum_probs=213.6
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|+|||||||.|+||++ .+||+|+|++|+|||+|++++|.+++++++++++++..+.+++++... .+.+..+
T Consensus 6 ~~aiIlAaG~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~------~~~~i~~ 76 (456)
T PRK09451 6 MSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE------PLNWVLQ 76 (456)
T ss_pred ceEEEEcCCCCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC------CcEEEEC
Confidence 5799999999999985 789999999999999999999999999999999998878888887641 2334445
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
..+.|++++++.+++.+. .+++|++++||. +.+.++.++++.|.+.+ +.+++ +++..||++. +++ ++|.
T Consensus 77 ~~~~Gt~~al~~a~~~l~--~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~yG~v~-~~~-g~V~ 150 (456)
T PRK09451 77 AEQLGTGHAMQQAAPFFA--DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLDNPTGYGRIT-REN-GKVV 150 (456)
T ss_pred CCCCCcHHHHHHHHHhhc--cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcCCCCCceEEE-ecC-CeEE
Confidence 667899999999998884 234899999998 45567899988875443 23333 7778899975 444 8999
Q ss_pred EEeecCCCC----CCCeEEEEEEEEChhhhhh-cc---CC---CCCcccchHHHHHhcC-ceEEEe------ecCe--EE
Q 018327 156 KFVEKPKLF----VGNKINAGIYLLNPAVLDR-IE---LR---PTSIEKEVFPKIALEG-KLFAMV------LPGF--WM 215 (358)
Q Consensus 156 ~~~ek~~~~----~~~~~~~Giy~~~~~~l~~-l~---~~---~~~~~~d~l~~l~~~~-~v~~~~------~~~~--~~ 215 (358)
+|.|||... .+++.++|+|+|+++.|.. +. .. ...+..|+++.+++++ ++.+|. +.|+ |.
T Consensus 151 ~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~ 230 (456)
T PRK09451 151 GIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRL 230 (456)
T ss_pred EEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHH
Confidence 999998632 2468999999999987753 32 11 2234469999999886 578875 3455 67
Q ss_pred ecCCHHHHHHHHHH--HHHhhcccCcccccCC-cEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCC
Q 018327 216 DIGQPRDYITGLRL--YLDSLRKKSSLKLATG-ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG 292 (358)
Q Consensus 216 di~t~~dy~~a~~~--~l~~~~~~~~~~~~~~-~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~ 292 (358)
|++++++|+++++. ++..- ...+++. ..+.++..+++++.|++++.|.++++||++|.|+++|.|.+|+|+++
T Consensus 231 di~~~~~y~~~~~~~~~l~~~----~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~ 306 (456)
T PRK09451 231 QLARLERVYQAEQAEKLLLAG----VMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDD 306 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcC----CEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCC
Confidence 89999999998742 22210 0001111 11233444555555555555544455555555555555555555555
Q ss_pred cEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEE
Q 018327 293 VRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS 336 (358)
Q Consensus 293 ~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 336 (358)
|.|++++.|.+++|++++.||+++.|.+++.+++++.||+++.+
T Consensus 307 ~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 307 CEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred CEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 55555555555555555555555555444444444444444433
No 25
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.1e-41 Score=324.63 Aligned_cols=334 Identities=24% Similarity=0.405 Sum_probs=263.3
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|+|||||||.|+||++ .+||+|+|++|+|||+|+|++|.+++++++++++++..+++.+++.+ +. .+..+
T Consensus 3 ~~avIlAaG~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-----~~--~~~~~ 72 (458)
T PRK14354 3 RYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-----RS--EFALQ 72 (458)
T ss_pred ceEEEEeCCCCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-----Cc--EEEEc
Confidence 4799999999999986 79999999999999999999999999999999999988888888764 12 23345
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
..+.|+++++++++++++.. +++++++.||. +.+.+++++++.|.+.+.++++++ +++..|+.+..|++ ++|.
T Consensus 73 ~~~~g~~~al~~a~~~l~~~-~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~-~~V~ 150 (458)
T PRK14354 73 EEQLGTGHAVMQAEEFLADK-EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNEN-GEVE 150 (458)
T ss_pred CCCCCHHHHHHHHHHHhccc-CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCC-CCEE
Confidence 56779999999999988432 24799999997 445668999999987777777665 66777888888876 8999
Q ss_pred EEeecCCC----CCCCeEEEEEEEEChhhh-hhccCC------CCCcccchHHHHHhcC-ceEEEeecCe--EEecCCHH
Q 018327 156 KFVEKPKL----FVGNKINAGIYLLNPAVL-DRIELR------PTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPR 221 (358)
Q Consensus 156 ~~~ek~~~----~~~~~~~~Giy~~~~~~l-~~l~~~------~~~~~~d~l~~l~~~~-~v~~~~~~~~--~~di~t~~ 221 (358)
.+.|||.. ....+.++|+|+|+++.+ +.+... ......|+++.+++.+ +++++..+++ |.++++++
T Consensus 151 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~ 230 (458)
T PRK14354 151 KIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRV 230 (458)
T ss_pred EEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHH
Confidence 99998742 234678999999998744 444211 1222357788888765 5889988865 56778999
Q ss_pred HHHHHHHHHHHhhcccC----cccccC-CcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEEC
Q 018327 222 DYITGLRLYLDSLRKKS----SLKLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 296 (358)
Q Consensus 222 dy~~a~~~~l~~~~~~~----~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~ 296 (358)
||.+++..+..+..... ...+.+ .+.+++++.|++++.|+++++|.+++.||++|.|++++.|.+++|+++|.|+
T Consensus 231 Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~ 310 (458)
T PRK14354 231 ALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT 310 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEE
Confidence 99999876654433211 122434 4578889999999999999999889999999999999999999999999998
Q ss_pred CCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCcee
Q 018327 297 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI 347 (358)
Q Consensus 297 ~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i 347 (358)
++.+.+++||++|.||+++.|..+++||++++|++++.+.++.+.++..+
T Consensus 311 -~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i 360 (458)
T PRK14354 311 -NSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKV 360 (458)
T ss_pred -EEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEe
Confidence 47888899999999999999997799999999988888766666555544
No 26
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.8e-41 Score=317.52 Aligned_cols=320 Identities=24% Similarity=0.347 Sum_probs=241.2
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|+|||||||.|+||++ .+||+|+|++|||||+|+|+++.+.+ ++++|++++..+.+.+++.+ ++. +..+
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-----~~~--~~~~ 69 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-----WVK--IFLQ 69 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-----ccE--EEec
Confidence 8999999999999986 79999999999999999999999975 89999999887777777654 233 3445
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
..+.|++++++++++++.. +++|++++||. +.+.+++++++.|.+++.++++++ +++..||++..| + +++
T Consensus 70 ~~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~-g~v- 144 (448)
T PRK14357 70 EEQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-G-GKY- 144 (448)
T ss_pred CCCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-C-CeE-
Confidence 6678999999999999842 34899999997 556678999999988888888776 677889998877 4 788
Q ss_pred EEeecCCCC----CCCeEEEEEEEEChhhhhh-ccC---C---CCCcccchHHHHHhcCceEEEeecCe--EEecCCHHH
Q 018327 156 KFVEKPKLF----VGNKINAGIYLLNPAVLDR-IEL---R---PTSIEKEVFPKIALEGKLFAMVLPGF--WMDIGQPRD 222 (358)
Q Consensus 156 ~~~ek~~~~----~~~~~~~Giy~~~~~~l~~-l~~---~---~~~~~~d~l~~l~~~~~v~~~~~~~~--~~di~t~~d 222 (358)
.+.|||... ...+.++|+|+|+++.|.. +.. . ...+..|+++.+ .++..|...++ |.+++++++
T Consensus 145 ~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~ 221 (448)
T PRK14357 145 RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQ 221 (448)
T ss_pred EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHH
Confidence 777866432 1358999999999998654 331 1 112234666666 24778888887 667779999
Q ss_pred HHHHHHHHHHhh----cccCcccccC-CcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECC
Q 018327 223 YITGLRLYLDSL----RKKSSLKLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297 (358)
Q Consensus 223 y~~a~~~~l~~~----~~~~~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~ 297 (358)
+..+...+.... .......+.+ .+.+++++.|++++.|++++.|++++.||++|+|+++|.|.+|+|+++|.|.
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~- 300 (448)
T PRK14357 222 LAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKII- 300 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEe-
Confidence 988765553321 1111122333 3477888888888888888888888888888888888888888888888884
Q ss_pred CcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcE
Q 018327 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV 340 (358)
Q Consensus 298 ~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~ 340 (358)
.+.+.+++|++++.||+++.|..+++||++++|++++.+.++.
T Consensus 301 ~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ 343 (448)
T PRK14357 301 RSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKST 343 (448)
T ss_pred eeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccE
Confidence 4667777777777777777776667777777777665554333
No 27
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.6e-40 Score=312.91 Aligned_cols=334 Identities=18% Similarity=0.295 Sum_probs=257.6
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|.+||||||.|+||++ .+||+|+|++|+|||+|+|++|.+++++++++++++..+.+.+++.+. .+ +.++.+
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~---~~--i~~v~~ 73 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL---PG--LEFVEQ 73 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc---CC--eEEEEe
Confidence 5789999999999986 789999999999999999999999999999999999878888887652 12 333445
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
..+.|++++++.+++.++... +++++++||. +.+.+++.+++.|.+.+.+.+++. +++..||.+..|++ ++|.
T Consensus 74 ~~~~G~~~sv~~~~~~l~~~~-~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~-g~v~ 151 (450)
T PRK14360 74 QPQLGTGHAVQQLLPVLKGFE-GDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGN-NLVE 151 (450)
T ss_pred CCcCCcHHHHHHHHHHhhccC-CcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCC-CCEE
Confidence 566789999999998885323 3799999998 455679999999988877777665 67778999988876 8999
Q ss_pred EEeecCC----CCCCCeEEEEEEEEChhhhhhccCC-------CCCcccchHHHHHhcCceEEEeecCe--EEecCCHHH
Q 018327 156 KFVEKPK----LFVGNKINAGIYLLNPAVLDRIELR-------PTSIEKEVFPKIALEGKLFAMVLPGF--WMDIGQPRD 222 (358)
Q Consensus 156 ~~~ek~~----~~~~~~~~~Giy~~~~~~l~~l~~~-------~~~~~~d~l~~l~~~~~v~~~~~~~~--~~di~t~~d 222 (358)
++.|||. ...+++.++|+|+|+++.|..+.+. ...+..|.++.+.+ +..+...++ +..+++++|
T Consensus 152 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~~---~~~~~v~~~~~~~~i~~~~d 228 (450)
T PRK14360 152 QIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDP---VMAVEVEDYQEINGINDRKQ 228 (450)
T ss_pred EEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHhh---ceEEecCCHHHhhcCCCHHH
Confidence 9999975 2356789999999999877654321 11222455666532 445555554 566999999
Q ss_pred HHHHHHHHHHhhcc----cCcccccCCc-EEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECC
Q 018327 223 YITGLRLYLDSLRK----KSSLKLATGA-NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 297 (358)
Q Consensus 223 y~~a~~~~l~~~~~----~~~~~~~~~~-~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~ 297 (358)
+..+...+...... .....+.+.+ .+.+++.+++++.|++++.|.+++.||++|.|++++.|.+|.|+++|.|+
T Consensus 229 l~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~- 307 (450)
T PRK14360 229 LAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL- 307 (450)
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-
Confidence 99887765443321 1222345553 57888999999999999999889999999999999999988888888884
Q ss_pred CcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceec
Q 018327 298 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK 348 (358)
Q Consensus 298 ~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 348 (358)
.+.+.+++|+++|.||.++.|.++++||++++|++++.+.++.+..+..|.
T Consensus 308 ~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~ 358 (450)
T PRK14360 308 YSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVN 358 (450)
T ss_pred eeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEec
Confidence 577788888888888888888877888888888888877665555544443
No 28
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=2.5e-40 Score=287.36 Aligned_cols=230 Identities=74% Similarity=1.244 Sum_probs=206.9
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++++..+|++++++++++..+.+.+|+.++.+..++.+.+..+
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIE 80 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccC
Confidence 89999999999999999999999999999999999999999999999999999999899999999875566778777667
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKF 157 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~ 157 (358)
..+.|++++++.+.+.+... +++|++++||.+++.++.++++.|.++++++++++ +++..||++..|+++++|..+
T Consensus 81 ~~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~~ 159 (233)
T cd06425 81 TEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERF 159 (233)
T ss_pred CCCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCCCEEEEE
Confidence 77889999999999998532 24899999999999999999999999888888887 566789999998733899999
Q ss_pred eecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327 158 VEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL 231 (358)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~l 231 (358)
.|||..+.+++.++|+|+|++++|+.+.....+...++++.+++++++.+|.++++|.|++||++|+++++.+|
T Consensus 160 ~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 160 VEKPKVFVGNKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred EECCCCCCCCEEEEEEEEECHHHHHhcccCcccchhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 99998777889999999999999999877666677899999999999999999999999999999999988664
No 29
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=1.2e-38 Score=283.14 Aligned_cols=226 Identities=26% Similarity=0.454 Sum_probs=192.4
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhh-----------
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA----------- 69 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~----------- 69 (358)
|+|||||||.|+||+|+|..+||+|+|++|||+|+|+++++..+|+++|++++++..+.+.+|+.....
T Consensus 4 mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~ 83 (297)
T TIGR01105 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR 83 (297)
T ss_pred eEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcch
Confidence 899999999999999999999999999999999999999999999999999999999999999864110
Q ss_pred ----------ccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--------cCHHHHHHHHHhcCCe
Q 018327 70 ----------KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGE 131 (358)
Q Consensus 70 ----------~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~--------~~l~~~~~~~~~~~~~ 131 (358)
.+++++.++.|.++.|++++++++++++ .++ +|++++||.+++ .+++++++.|.+.++.
T Consensus 84 ~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l--~~~-~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~ 160 (297)
T TIGR01105 84 QLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVV--GDN-PFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRS 160 (297)
T ss_pred hhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHh--CCC-CEEEEECCeeccccccccchhHHHHHHHHHHHhCCc
Confidence 2467788888999999999999999999 433 899999999886 4789999998776665
Q ss_pred eEEEe---cCCCCeeeEEEc----CCCCc---EEEEeecCCCC---CCCeEEEEEEEEChhhhhhccCCC-----CCccc
Q 018327 132 ASIMV---DEPSKYGVVVME----ESTGK---VEKFVEKPKLF---VGNKINAGIYLLNPAVLDRIELRP-----TSIEK 193 (358)
Q Consensus 132 ~~~~~---~~~~~~~~~~~d----~~~~~---v~~~~ek~~~~---~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~ 193 (358)
++++. +++..||++..| ++ ++ |..+.|||..+ .++++++|+|+|++++|+.+.... .....
T Consensus 161 ~~~~~~~~~~~~~yGvv~~~~~~d~~-g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~~lt 239 (297)
T TIGR01105 161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLT 239 (297)
T ss_pred EEEEEEcCCCCccceEEEecccccCC-CCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCCCeeeHH
Confidence 54444 478999999984 33 54 58899998644 478999999999999999885421 12235
Q ss_pred chHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHH
Q 018327 194 EVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY 230 (358)
Q Consensus 194 d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~ 230 (358)
|+++.++++++++++.++|+|.|+++|++|++++..+
T Consensus 240 d~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred HHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHH
Confidence 8899999999999999999999999999999998765
No 30
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=2e-38 Score=279.34 Aligned_cols=227 Identities=42% Similarity=0.720 Sum_probs=198.1
Q ss_pred EEEEecC--CccccCcCCCCCCCcccccCCcchHHHHHHHHHH-CCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEec
Q 018327 3 ALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 3 avIla~G--~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~-~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
||||||| .|+||+|+|..+||+|+|++|+|||+|+|+++.+ +|+++++|++++..+.+.+|+.+..+..++.+.+..
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 6899999 8999999999999999999999999999999999 699999999999889999999875445677777777
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCeeeEEEcCCCCcE
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEESTGKV 154 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~v 154 (358)
+.++.|++++++.+++.+....+++|++++||.+++.+++++++.|.++++++++++ +++..||++..|+++++|
T Consensus 81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v 160 (257)
T cd06428 81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEV 160 (257)
T ss_pred CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeE
Confidence 777889999999999998543334899999999999999999999999888888776 346789999988333899
Q ss_pred EEEeecCCCCCCCeEEEEEEEEChhhhhhccCC---------------------CCCcccchHHHHHhcCceEEEeecCe
Q 018327 155 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIELR---------------------PTSIEKEVFPKIALEGKLFAMVLPGF 213 (358)
Q Consensus 155 ~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~---------------------~~~~~~d~l~~l~~~~~v~~~~~~~~ 213 (358)
..+.|||..+.++++++|+|+|++++|+.+.+. ..++..|+++.+++++++++|.++|+
T Consensus 161 ~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~ 240 (257)
T cd06428 161 LHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDF 240 (257)
T ss_pred EEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccccccccccccccccccceeeehhhhhhHHhccCCEEEecCCCe
Confidence 999999987788899999999999999877521 12344689999999999999999999
Q ss_pred EEecCCHHHHHHHHHH
Q 018327 214 WMDIGQPRDYITGLRL 229 (358)
Q Consensus 214 ~~di~t~~dy~~a~~~ 229 (358)
|.|++|+++|+++|+.
T Consensus 241 w~dig~~~~~~~a~~~ 256 (257)
T cd06428 241 WSQIKTAGSAIYANRL 256 (257)
T ss_pred eecCCCHHHHHhHhhc
Confidence 9999999999999875
No 31
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=1.6e-37 Score=272.72 Aligned_cols=229 Identities=40% Similarity=0.732 Sum_probs=196.2
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEec-cChHHHHHHHHhhhhccCcEEEEec
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
||||||||.|+||+|+|..+||+|+|++|+ |||+|+|+++..+|++++++|+. +..+.+.+|+++. ..+++++.++.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~-~~~~~~i~~i~ 79 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSG-YKFGVKIEYIV 79 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTS-GGGTEEEEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeeccccccccccccc-ccccccceeee
Confidence 799999999999999999999999999999 99999999999999999655555 6778899999973 44567888888
Q ss_pred cCCcCCCchHHHHHHhhccCCC-CCcEEEEeCCeeeccCHHHHHHHHHhcCCee--EEEe---cCCCCeeeEEEcCCCCc
Q 018327 80 ETEPLGTAGPLALARDKLIDDT-GEPFFVLNSDVISEYPFAEMIEFHKAHGGEA--SIMV---DEPSKYGVVVMEESTGK 153 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~-~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~d~~~~~ 153 (358)
+..+.|++++++++.+.+.... +++|++++||++++.++.++++.|.+++.++ ++.. ++++.||++..|++ ++
T Consensus 80 ~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~ 158 (248)
T PF00483_consen 80 QPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDED-GR 158 (248)
T ss_dssp ESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETT-SE
T ss_pred cccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccccceeeeeccc-ee
Confidence 8888999999999999995432 2259999999999999999999999988743 3333 67889999999986 89
Q ss_pred EEEEeecCCCCC-CCeEEEEEEEEChhhhhhcc------CCCCCcccchHHHHHhcCc-eEEEeecC--eEEecCCHHHH
Q 018327 154 VEKFVEKPKLFV-GNKINAGIYLLNPAVLDRIE------LRPTSIEKEVFPKIALEGK-LFAMVLPG--FWMDIGQPRDY 223 (358)
Q Consensus 154 v~~~~ek~~~~~-~~~~~~Giy~~~~~~l~~l~------~~~~~~~~d~l~~l~~~~~-v~~~~~~~--~~~di~t~~dy 223 (358)
|..+.|||.... +.++++|+|+|++++|+.+. .....+..|+++.+++++. +.++..++ +|.|+++|++|
T Consensus 159 V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~ 238 (248)
T PF00483_consen 159 VIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDY 238 (248)
T ss_dssp EEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHH
T ss_pred EEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHH
Confidence 999999999766 88999999999999999883 2344566789999999986 55778888 79999999999
Q ss_pred HHHHHHHHH
Q 018327 224 ITGLRLYLD 232 (358)
Q Consensus 224 ~~a~~~~l~ 232 (358)
++|++.+++
T Consensus 239 ~~a~~~~~~ 247 (248)
T PF00483_consen 239 LEANMDLLN 247 (248)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999998764
No 32
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=5.6e-37 Score=273.26 Aligned_cols=226 Identities=26% Similarity=0.471 Sum_probs=193.3
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHh-hh---------h-
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FE---------A- 69 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~-~~---------~- 69 (358)
|+|||||||.|+||+|+|..+||+|+|++|||+|+|+++++.++|+++|+|++++..+.+.+|+.. |. +
T Consensus 4 mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~ 83 (297)
T PRK10122 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR 83 (297)
T ss_pred eEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcchh
Confidence 799999999999999999999999999999999999999999999999999999999999999963 10 0
Q ss_pred ----------ccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--------cCHHHHHHHHHhcCCe
Q 018327 70 ----------KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGE 131 (358)
Q Consensus 70 ----------~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~--------~~l~~~~~~~~~~~~~ 131 (358)
.+++++.+..|.++.|++++++++++++ ..+ +|+++.||.++. .+++++++.|.+.+.+
T Consensus 84 ~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l--~~~-~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~ 160 (297)
T PRK10122 84 QLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAI--GDN-PFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS 160 (297)
T ss_pred hhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHc--CCC-CEEEEECCeeccCccccccchhHHHHHHHHHHhCCc
Confidence 1356788888888999999999999999 433 899999999875 4799999999887766
Q ss_pred eEEEe---cCCCCeeeEEEc----CCCC---cEEEEeecCCCC---CCCeEEEEEEEEChhhhhhccCC-----CCCccc
Q 018327 132 ASIMV---DEPSKYGVVVME----ESTG---KVEKFVEKPKLF---VGNKINAGIYLLNPAVLDRIELR-----PTSIEK 193 (358)
Q Consensus 132 ~~~~~---~~~~~~~~~~~d----~~~~---~v~~~~ek~~~~---~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~ 193 (358)
.+++. +++..||++..| ++ + +|..+.|||..+ .++++++|+|+|++++|..+.+. ......
T Consensus 161 ~~~~~~~~~~~~~yGvv~~d~~~~~~-g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~lt 239 (297)
T PRK10122 161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLT 239 (297)
T ss_pred EEEEEECCCCCCCceEEEecCcccCC-CCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHH
Confidence 54444 577899999986 33 5 688999999754 37899999999999999988642 112335
Q ss_pred chHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHH
Q 018327 194 EVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY 230 (358)
Q Consensus 194 d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~ 230 (358)
|+++.+++++++++|.++|+|.|+++|++|++++..+
T Consensus 240 d~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred HHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence 8899999999999999999999999999999999887
No 33
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=9.6e-37 Score=266.10 Aligned_cols=225 Identities=27% Similarity=0.431 Sum_probs=191.7
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccC-hHHHHHHHHhhhhccCcEEEEec
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+|+++.++|++++++++++. .+.+.+|+.+ .+.+++++.+..
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-~~~~~~~i~~~~ 79 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-GSDLGIRITYAV 79 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-ccccCceEEEee
Confidence 89999999999999999999999999999999999999999999999999998764 4778888875 345677777777
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-eccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
+..+.|++++++.+.+.+ .. +++++++||.+ .+.++.++++.|.+++.++++++ ++++.||++..|++ ++|.
T Consensus 80 ~~~~~G~~~al~~a~~~~--~~-~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-g~v~ 155 (240)
T cd02538 80 QPKPGGLAQAFIIGEEFI--GD-DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDEN-GRVL 155 (240)
T ss_pred CCCCCCHHHHHHHHHHhc--CC-CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCC-CcEE
Confidence 767789999999999998 33 38999999975 46679999999988778887776 56778999999976 8999
Q ss_pred EEeecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcCceEEEeec--CeEEecCCHHHHHHHHH
Q 018327 156 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLR 228 (358)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~v~~~~~~--~~~~di~t~~dy~~a~~ 228 (358)
.+.|||....+++.++|+|+|++++++.+.+. ......++++.+++++++.++.++ ++|.|++||++|+++++
T Consensus 156 ~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~ 235 (240)
T cd02538 156 SIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASN 235 (240)
T ss_pred EEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHH
Confidence 99999987778899999999999999877421 112225889999998887777766 99999999999999998
Q ss_pred HH
Q 018327 229 LY 230 (358)
Q Consensus 229 ~~ 230 (358)
.+
T Consensus 236 ~~ 237 (240)
T cd02538 236 FV 237 (240)
T ss_pred HH
Confidence 64
No 34
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=1.3e-36 Score=266.57 Aligned_cols=225 Identities=31% Similarity=0.522 Sum_probs=194.9
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhc-cCcEE-----
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAK-LGIKI----- 75 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~-~~~~i----- 75 (358)
+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|+|++++..+.+.+|+.++... .++.+
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN 80 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence 689999999999999999999999999999999999999999999999999999889999999864211 12222
Q ss_pred --------------EEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-cCCC
Q 018327 76 --------------ICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-DEPS 140 (358)
Q Consensus 76 --------------~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-~~~~ 140 (358)
.+..+.++.|++++++++++.+ .. ++|++++||.+++.++.++++.|.+.+++++++. .++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i--~~-e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~~~~ 157 (254)
T TIGR02623 81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYL--DD-EAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQPPG 157 (254)
T ss_pred ccccccccCCccceeeeecCCcCCcHHHHHHHHHhc--CC-CeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEecCCC
Confidence 2233445689999999999998 33 4899999999999999999999998888888776 7788
Q ss_pred CeeeEEEcCCCCcEEEEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCH
Q 018327 141 KYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQP 220 (358)
Q Consensus 141 ~~~~~~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~ 220 (358)
.||.+..|+ ++|..+.|||... ++++++|+|+|++++|+.+.....++..|+++.+++++++++|.++|+|.|++||
T Consensus 158 ~yG~v~~d~--~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~ 234 (254)
T TIGR02623 158 RFGALDLEG--EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQPMDTL 234 (254)
T ss_pred cccEEEECC--CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhccccCchhhhhHHHHHHhCCCEEEEeCCCEEecCCch
Confidence 999998874 6899999998643 6789999999999999888766667778999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 018327 221 RDYITGLRLYLD 232 (358)
Q Consensus 221 ~dy~~a~~~~l~ 232 (358)
++|.++++.+.+
T Consensus 235 ~~~~~~~~~~~~ 246 (254)
T TIGR02623 235 RDKNYLEELWES 246 (254)
T ss_pred HHHHHHHHHHHc
Confidence 999999887764
No 35
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=1.9e-36 Score=268.41 Aligned_cols=226 Identities=22% Similarity=0.387 Sum_probs=193.6
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEecc-ChHHHHHHHHhhhhccCcEEEEec
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
|+|||||||.|+||+|+|..+||+|+|++|||||+|+|++|..+|+++|++++.+ ..+.+++++.+ .+.|++++.+..
T Consensus 4 ~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~-g~~~g~~i~y~~ 82 (292)
T PRK15480 4 RKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGLNLQYKV 82 (292)
T ss_pred eEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC-ccccCceeEEEE
Confidence 7899999999999999999999999999999999999999999999999988765 45778888876 456788888998
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-eccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
+..+.|+++++..+.+++ ..+ +++++.||.+ ++.++.++++.|.+++.++++++ .+|+.||++..|++ ++|.
T Consensus 83 q~~~~Gta~Al~~a~~~i--~~~-~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~-g~v~ 158 (292)
T PRK15480 83 QPSPDGLAQAFIIGEEFI--GGD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQN-GTAI 158 (292)
T ss_pred CCCCCCHHHHHHHHHHHh--CCC-CEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCC-CcEE
Confidence 988999999999999999 433 6888899975 57889999999988777787765 78899999999976 8999
Q ss_pred EEeecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcCceEE-EeecC-eEEecCCHHHHHHHHH
Q 018327 156 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFA-MVLPG-FWMDIGQPRDYITGLR 228 (358)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~v~~-~~~~~-~~~di~t~~dy~~a~~ 228 (358)
.+.|||..+.++++++|+|+|++++++.+..- ......|+++.+++++++.. +...+ .|.|++|+++|.+|+.
T Consensus 159 ~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~ 238 (292)
T PRK15480 159 SLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASN 238 (292)
T ss_pred EEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHH
Confidence 99999988889999999999999999877431 11122588899998888654 35567 5999999999999998
Q ss_pred HHH
Q 018327 229 LYL 231 (358)
Q Consensus 229 ~~l 231 (358)
.+.
T Consensus 239 ~~~ 241 (292)
T PRK15480 239 FIA 241 (292)
T ss_pred HHH
Confidence 765
No 36
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=5.6e-36 Score=265.17 Aligned_cols=225 Identities=23% Similarity=0.409 Sum_probs=192.2
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEecc-ChHHHHHHHHhhhhccCcEEEEecc
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
+|||||||.|+||+|+|..+||+|+|++|||||+|+|+.+..+|+++|+|++.+ ..+.+++++.+ .+.+++++.+..+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~~~q 79 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSYAVQ 79 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc-ccccCceEEEEEc
Confidence 689999999999999999999999999999999999999999999999988864 56778888876 4567889999888
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEK 156 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~ 156 (358)
.++.|+++++..+.+++ ..+ +++++.||. +++.++.++++.|.+.+.++++++ ++|+.||++..|++ ++|..
T Consensus 80 ~~~~Gta~al~~a~~~l--~~~-~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~-g~V~~ 155 (286)
T TIGR01207 80 PSPDGLAQAFIIGEDFI--GGD-PSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSN-GRAIS 155 (286)
T ss_pred cCCCCHHHHHHHHHHHh--CCC-CEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCC-CeEEE
Confidence 88999999999999999 433 888889997 467789999999988777777776 77889999999976 89999
Q ss_pred EeecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcCceEEEee-cCe-EEecCCHHHHHHHHHH
Q 018327 157 FVEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEGKLFAMVL-PGF-WMDIGQPRDYITGLRL 229 (358)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~~v~~~~~-~~~-~~di~t~~dy~~a~~~ 229 (358)
+.|||..+.++++++|+|+|++++++.+..- ......|+++.+++++.+..... .|+ |.|++||++|++++..
T Consensus 156 i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~ 235 (286)
T TIGR01207 156 IEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNF 235 (286)
T ss_pred EEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHH
Confidence 9999988889999999999999998876421 11222588999999887666555 565 9999999999999876
Q ss_pred HH
Q 018327 230 YL 231 (358)
Q Consensus 230 ~l 231 (358)
+.
T Consensus 236 ~~ 237 (286)
T TIGR01207 236 IQ 237 (286)
T ss_pred HH
Confidence 54
No 37
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=9.7e-35 Score=253.05 Aligned_cols=226 Identities=33% Similarity=0.562 Sum_probs=194.9
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|++++++++++..+.+.+++.+. ..+++.+.++.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 79 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDG-SRFGVRITYILQ 79 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcch-hhcCCeEEEEEC
Confidence 8999999999999999999999999999999999999999999999999999999889999998763 245677777777
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKF 157 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~ 157 (358)
..+.|++++++.+++.+. . +++++++||.+++.++.++++.|.+.+.++++++ .++..++++..|+ ++|..+
T Consensus 80 ~~~~g~~~sl~~a~~~i~--~-~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~ 154 (236)
T cd04189 80 EEPLGLAHAVLAARDFLG--D-EPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVDD--GRIVRL 154 (236)
T ss_pred CCCCChHHHHHHHHHhcC--C-CCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCCcccceEEEEcC--CeEEEE
Confidence 777899999999999883 3 3899999999999999999999988888887776 5667788888874 699999
Q ss_pred eecCCCCCCCeEEEEEEEEChhhhhhccCC-----CCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327 158 VEKPKLFVGNKINAGIYLLNPAVLDRIELR-----PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYL 231 (358)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~-----~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~~l 231 (358)
.+||....+.+.++|+|+|++++++.+... ......++++.+++++ +++++..+++|.+++||+||.++++.++
T Consensus 155 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l 234 (236)
T cd04189 155 VEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL 234 (236)
T ss_pred EECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHH
Confidence 999876677899999999999999877421 1122358888888776 4899999999999999999999999887
Q ss_pred H
Q 018327 232 D 232 (358)
Q Consensus 232 ~ 232 (358)
+
T Consensus 235 ~ 235 (236)
T cd04189 235 D 235 (236)
T ss_pred h
Confidence 5
No 38
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=5e-35 Score=252.17 Aligned_cols=215 Identities=28% Similarity=0.483 Sum_probs=186.1
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET 81 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~ 81 (358)
+|||||||.|+||+|+|..+||+|+|++|+|||+|++++|.++|+++|++++++..+++.+|+.+ +.+++.+.+..+.
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~~~ 78 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISDEP 78 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEecCC
Confidence 68999999999999999999999999999999999999999999999999999998999999986 4467788777666
Q ss_pred -CcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHh--cCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 82 -EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKA--HGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 82 -~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
+..|++++++.+++.+. . ++|++++||.+++.++.++++.|.+ .+..+++.. +.+..+|.+..|++ ++|.
T Consensus 79 ~~~~g~~~~l~~~~~~~~--~-~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~v~ 154 (221)
T cd06422 79 DELLETGGGIKKALPLLG--D-EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDAD-GRLR 154 (221)
T ss_pred CcccccHHHHHHHHHhcC--C-CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCC-CcEe
Confidence 67899999999999983 3 3899999999999999999999874 445555554 45678899988876 8999
Q ss_pred EEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHH
Q 018327 156 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITG 226 (358)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a 226 (358)
.+.++|.. .+.++|+|+|+++++..+.+. .....++++.++++++++++..+++|.|++||++|.+|
T Consensus 155 ~~~~~~~~---~~~~~Giyi~~~~~l~~l~~~-~~~~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 155 RGGGGAVA---PFTFTGIQILSPELFAGIPPG-KFSLNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred ecccCCCC---ceEEEEEEEEcHHHHhhCCcC-cccHHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 99888753 789999999999999987654 23346889999999999999999999999999999864
No 39
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=9.9e-35 Score=255.14 Aligned_cols=226 Identities=30% Similarity=0.523 Sum_probs=191.9
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhc-cCcEEEE----
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAK-LGIKIIC---- 77 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~-~~~~i~~---- 77 (358)
|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+..+|+++|++++++..+.+++|+.+..+. .++.+.+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNR 80 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccc
Confidence 68999999999999999999999999999999999999999999999999999999999999874321 1122211
Q ss_pred ---ec------------cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-cCCCC
Q 018327 78 ---SQ------------ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-DEPSK 141 (358)
Q Consensus 78 ---~~------------~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 141 (358)
.. +..+.+++++++++++.+. .+++|++++||.+++.++.++++.|.+.+.+++++. ..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~--~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~~~~~ 158 (253)
T cd02524 81 IELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLG--DDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVHPPGR 158 (253)
T ss_pred eeeecccccccceeecccCcccccHHHHHHHHHhcC--CCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEecCCCc
Confidence 11 1224678999999999983 324899999999999999999999988888888776 66788
Q ss_pred eeeEEEcCCCCcEEEEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHH
Q 018327 142 YGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPR 221 (358)
Q Consensus 142 ~~~~~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~ 221 (358)
||.+..|++ ++|..+.+||... +.++++|+|+|++++++.+.....++..|+++.++++++++++.++|+|.+++|++
T Consensus 159 ~g~v~~d~~-g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~ 236 (253)
T cd02524 159 FGELDLDDD-GQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCMDTLR 236 (253)
T ss_pred ccEEEECCC-CCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccccchhhHHHHHHHHhcCCEEEEecCCEEEeCcCHH
Confidence 999999886 8999999998643 56899999999999999887655556679999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 018327 222 DYITGLRLYLD 232 (358)
Q Consensus 222 dy~~a~~~~l~ 232 (358)
+|.++++.+.+
T Consensus 237 ~~~~~~~~~~~ 247 (253)
T cd02524 237 DKQTLEELWNS 247 (253)
T ss_pred HHHHHHHHHHc
Confidence 99999977643
No 40
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=7.6e-35 Score=258.19 Aligned_cols=228 Identities=27% Similarity=0.381 Sum_probs=189.5
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhh------c----
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEA------K---- 70 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~------~---- 70 (358)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+|+++.++|+++++|++++..+.+.+|+.+... .
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKT 80 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccH
Confidence 899999999999999999999999999999999999999999999999999999998999999964110 0
Q ss_pred ----------cCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc---CHHHHHHHHHhcCCeeEEEe-
Q 018327 71 ----------LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMV- 136 (358)
Q Consensus 71 ----------~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~---~l~~~~~~~~~~~~~~~~~~- 136 (358)
.+..+.+..+..+.|++++++.+.+.++ . ++|++++||.++.. +++++++.|.+++.+..++.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~--~-~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (267)
T cd02541 81 DLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIG--D-EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEE 157 (267)
T ss_pred HHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhC--C-CceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEE
Confidence 1456667777778899999999999984 3 38999999997754 49999999987665543332
Q ss_pred ---cCCCCeeeEEEcCC---CCcEEEEeecCC--CCCCCeEEEEEEEEChhhhhhccCCC-----CCcccchHHHHHhcC
Q 018327 137 ---DEPSKYGVVVMEES---TGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIALEG 203 (358)
Q Consensus 137 ---~~~~~~~~~~~d~~---~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~d~l~~l~~~~ 203 (358)
+++..||++..|++ +++|..+.|||. ...+.++++|+|+|++++|..+.... .....++++.+++++
T Consensus 158 ~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~ 237 (267)
T cd02541 158 VPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEE 237 (267)
T ss_pred cChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcC
Confidence 35688999998851 258999999986 35678899999999999998885421 123357899999888
Q ss_pred ceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327 204 KLFAMVLPGFWMDIGQPRDYITGLRLYL 231 (358)
Q Consensus 204 ~v~~~~~~~~~~di~t~~dy~~a~~~~l 231 (358)
++++|.++|+|.|++||++|+++++.+.
T Consensus 238 ~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 238 PVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred CEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 9999999999999999999999998753
No 41
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=2e-34 Score=257.21 Aligned_cols=226 Identities=27% Similarity=0.369 Sum_probs=190.2
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhh---h----hc---
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF---E----AK--- 70 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~---~----~~--- 70 (358)
|+|||+|||.|+||+|+|..+||+|+|++|+|+|+|+|+++.++|+++++|++++..+.+.+|+.+. . ++
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 88 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR 88 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhh
Confidence 7899999999999999999999999999999999999999999999999999999989999999741 1 00
Q ss_pred -----------cCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeec--------cCHHHHHHHHHhcCCe
Q 018327 71 -----------LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGE 131 (358)
Q Consensus 71 -----------~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~--------~~l~~~~~~~~~~~~~ 131 (358)
.+..+.+..|..+.|++++++++.+++ .+ ++|++++||.+++ .++.++++.|.+++.+
T Consensus 89 ~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~--~~-~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~ 165 (302)
T PRK13389 89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVV--GD-EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS 165 (302)
T ss_pred HHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHc--CC-CCEEEEeCcceecccccccccccHHHHHHHHHhcCCC
Confidence 123555666777889999999999887 33 3899999999874 6899999999877765
Q ss_pred eEEEe---cCCCCeeeEEEcC------CCCcEEEEeecCC--CCCCCeEEEEEEEEChhhhhhccCCC-----CCcccch
Q 018327 132 ASIMV---DEPSKYGVVVMEE------STGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEV 195 (358)
Q Consensus 132 ~~~~~---~~~~~~~~~~~d~------~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~d~ 195 (358)
++++ +++..||++..|. ++++|..+.|||. ...++++++|+|+|++++|+.+.... ..+..|+
T Consensus 166 -tl~~~~~~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~~~~e~~l~d~ 244 (302)
T PRK13389 166 -QIMVEPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDA 244 (302)
T ss_pred -EEEEEEcccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHH
Confidence 4444 6788999998763 1257999999997 35578999999999999998875322 2334688
Q ss_pred HHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHH
Q 018327 196 FPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY 230 (358)
Q Consensus 196 l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~ 230 (358)
++.+++++++.+|..+|+|.|++||++|++++..+
T Consensus 245 i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 245 IDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred HHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 99999988999999999999999999999998876
No 42
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=4.1e-34 Score=247.01 Aligned_cols=219 Identities=34% Similarity=0.621 Sum_probs=190.6
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~ 82 (358)
|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|+++++|++++..+.+.+++.+. ..++..+.+..+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~ 79 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVIEPE 79 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEECCC
Confidence 69999999999999999999999999999999999999999999999999998888888888752 12455665666667
Q ss_pred cCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEEee
Q 018327 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVE 159 (358)
Q Consensus 83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~~e 159 (358)
..|++++++.+++.+ .. ++|++++||.+++.++.++++.|.+.+.++++++ +++..++.+..|++ ++|..+.+
T Consensus 80 ~~G~~~~l~~a~~~~--~~-~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e 155 (223)
T cd06915 80 PLGTGGAIKNALPKL--PE-DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGD-GRVIAFVE 155 (223)
T ss_pred CCcchHHHHHHHhhc--CC-CCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCC-CeEEEEEe
Confidence 789999999999988 33 3999999999998899999999987777777776 45678888888876 89999999
Q ss_pred cCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHH
Q 018327 160 KPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITG 226 (358)
Q Consensus 160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a 226 (358)
||....+.+.++|+|+|++++|+.+.....++..++++.+++++++.++.++++|.|++|++||.++
T Consensus 156 k~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 156 KGPGAAPGLINGGVYLLRKEILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred CCCCCCCCcEEEEEEEECHHHHhhCCccCCChHHHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence 9876667899999999999999988665566677899999988899999999999999999999887
No 43
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=7.6e-34 Score=250.86 Aligned_cols=223 Identities=25% Similarity=0.369 Sum_probs=184.1
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhh---h--------
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE---A-------- 69 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~---~-------- 69 (358)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+|+++.++|+++++|++++..+.+.+|+.+-. .
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKE 80 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhH
Confidence 89999999999999999999999999999999999999999999999999999999999999986310 0
Q ss_pred ---------ccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc---CHHHHHHHHHhcCCeeEEEe-
Q 018327 70 ---------KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMV- 136 (358)
Q Consensus 70 ---------~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~---~l~~~~~~~~~~~~~~~~~~- 136 (358)
.....+.+..+..+.|++++++++++.+ .. ++|++++||.++.. ++.++++.|.+++++..++.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~--~~-~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~~ 157 (260)
T TIGR01099 81 ELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFV--GD-EPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEE 157 (260)
T ss_pred HHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhh--CC-CCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEEEE
Confidence 0023455566667789999999999988 33 38999999997653 69999999988777653332
Q ss_pred ---cCCCCeeeEEEcC---CCCcEEEEeecCC--CCCCCeEEEEEEEEChhhhhhccCCC-----CCcccchHHHHHhcC
Q 018327 137 ---DEPSKYGVVVMEE---STGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIALEG 203 (358)
Q Consensus 137 ---~~~~~~~~~~~d~---~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~d~l~~l~~~~ 203 (358)
+++..||++..|. ++++|..+.|||. ...++++++|+|+|++++|..+.... .....|+++.+++++
T Consensus 158 ~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~ 237 (260)
T TIGR01099 158 VPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEKE 237 (260)
T ss_pred CChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhcC
Confidence 4668899998862 2268999999984 34577899999999999999885322 122357899999889
Q ss_pred ceEEEeecCeEEecCCHHHHHHH
Q 018327 204 KLFAMVLPGFWMDIGQPRDYITG 226 (358)
Q Consensus 204 ~v~~~~~~~~~~di~t~~dy~~a 226 (358)
++++|.++|+|.|++||++|+++
T Consensus 238 ~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 238 TVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred CEEEEEcceEEEeCCCHHHHhhC
Confidence 99999999999999999999874
No 44
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=9.4e-33 Score=237.97 Aligned_cols=216 Identities=35% Similarity=0.672 Sum_probs=183.3
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~ 82 (358)
|||||||.|+||+|+|..+||+|+|++|+|||+|+|++|..+|+++++|++++..+.+++|+.+. ..+++++.++.+..
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~~~~ 79 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVREDK 79 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-cccCccEEEEECCC
Confidence 68999999999999999999999999999999999999999999999999999888888888752 33566666666666
Q ss_pred cCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEEee
Q 018327 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVE 159 (358)
Q Consensus 83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~~e 159 (358)
+.|+++++..+.+.. +++|++++||.+++.++.++++.|..++.++++++ .....||++..|+ ++|..+.|
T Consensus 80 ~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~~e 153 (220)
T cd06426 80 PLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETEG--GRITSIEE 153 (220)
T ss_pred CCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEECC--CEEEEEEE
Confidence 789999988776544 23899999999999999999999988888887776 3456788888874 89999999
Q ss_pred cCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHH
Q 018327 160 KPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGL 227 (358)
Q Consensus 160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~ 227 (358)
||.. +.++++|+|+|++++++.+.+.......++++.+++++ .+.++.++++|.|++|++||.+|+
T Consensus 154 k~~~--~~~~~~Giy~~~~~~~~~i~~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 154 KPTH--SFLVNAGIYVLEPEVLDLIPKNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred CCCC--CCeEEEEEEEEcHHHHhhcCCCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 8763 57899999999999999886554433468889988775 499999999999999999999874
No 45
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=8.1e-33 Score=237.90 Aligned_cols=211 Identities=40% Similarity=0.744 Sum_probs=185.4
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~ 82 (358)
|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+..+|++++++++++..+.+++++.+. ..++..+.+..+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~~~~ 79 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVVQEE 79 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEeCCC
Confidence 68999999999999999999999999999999999999999999999999999888898888762 22466777777767
Q ss_pred cCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEEee
Q 018327 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKFVE 159 (358)
Q Consensus 83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~~e 159 (358)
+.|++++++.+++.+ .. ++|++++||.+++.++.++++.|.+++.++++++ +++..|+++..|++ ++|..+.|
T Consensus 80 ~~g~~~al~~~~~~~--~~-~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e 155 (217)
T cd04181 80 PLGTAGAVRNAEDFL--GD-DDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDD-GRVTRFVE 155 (217)
T ss_pred CCccHHHHHHhhhhc--CC-CCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCC-CcEEEEEE
Confidence 789999999999988 33 3999999999999999999999998888888887 55678999999886 89999999
Q ss_pred cCCCCCCCeEEEEEEEEChhhhhhccCCC---CCcccchHHHHHhcCceEEEeecCeEEecC
Q 018327 160 KPKLFVGNKINAGIYLLNPAVLDRIELRP---TSIEKEVFPKIALEGKLFAMVLPGFWMDIG 218 (358)
Q Consensus 160 k~~~~~~~~~~~Giy~~~~~~l~~l~~~~---~~~~~d~l~~l~~~~~v~~~~~~~~~~di~ 218 (358)
||....+++.++|+|+|++++++.+.... .++..++++.++++++++++.++|+|.|++
T Consensus 156 k~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 156 KPTLPESNLANAGIYIFEPEILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred CCCCCCCCEEEEEEEEECHHHHHhhhhcCCcccccHHHHHHHHHhcCCEEEEEcCCEEecCC
Confidence 98866678999999999999998876543 566678999999888999999999999985
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-31 Score=224.23 Aligned_cols=229 Identities=28% Similarity=0.417 Sum_probs=194.9
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhh-------------
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF------------- 67 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~------------- 67 (358)
+||||+|||.|+||.|.|+..||-|||+-+||+|+|..+.+.++|++++++|++.....+.+|+..-
T Consensus 5 rKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K~ 84 (291)
T COG1210 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGKR 84 (291)
T ss_pred cEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCHH
Confidence 4899999999999999999999999999999999999999999999999999999888888877630
Q ss_pred -----hh--ccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc--C-HHHHHHHHHhcCCeeEEEe-
Q 018327 68 -----EA--KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY--P-FAEMIEFHKAHGGEASIMV- 136 (358)
Q Consensus 68 -----~~--~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~--~-l~~~~~~~~~~~~~~~~~~- 136 (358)
-+ ...+++.++.|.++.|.++|+++|.+++ +++ +|.|+.+|.+... + ++++++.+.+.+.+...+.
T Consensus 85 ~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~v--g~E-pFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~e 161 (291)
T COG1210 85 ELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFV--GDE-PFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVEE 161 (291)
T ss_pred HHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhc--CCC-ceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEEE
Confidence 12 2257889999999999999999999999 655 9999999997653 2 8999999988877555544
Q ss_pred ---cCCCCeeeEE----EcCCCCcEEEEeecCC--CCCCCeEEEEEEEEChhhhhhccCCCCC----c-ccchHHHHHhc
Q 018327 137 ---DEPSKYGVVV----MEESTGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRPTS----I-EKEVFPKIALE 202 (358)
Q Consensus 137 ---~~~~~~~~~~----~d~~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~----~-~~d~l~~l~~~ 202 (358)
++.+.||++. .+.+..+|..+.|||. +..|++...|-|+|++++|+.|++.... + ..|.+..|.+.
T Consensus 162 v~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G~ggEiQLTDai~~L~~~ 241 (291)
T COG1210 162 VPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLKK 241 (291)
T ss_pred CCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCCCCCEeeHHHHHHHHHhh
Confidence 6778999997 3332248999999996 5689999999999999999999764322 2 25889999999
Q ss_pred CceEEEeecCeEEecCCHHHHHHHHHHHHH
Q 018327 203 GKLFAMVLPGFWMDIGQPRDYITGLRLYLD 232 (358)
Q Consensus 203 ~~v~~~~~~~~~~di~t~~dy~~a~~~~l~ 232 (358)
..++++.+.|..+|++++..|++++-.+..
T Consensus 242 ~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l 271 (291)
T COG1210 242 EPVLAYVFEGKRYDCGSKLGYIKANVEFAL 271 (291)
T ss_pred CcEEEEEecccEEccCCcccHHHHHHHHHh
Confidence 999999999999999999999999877654
No 47
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=1.2e-29 Score=217.79 Aligned_cols=176 Identities=22% Similarity=0.345 Sum_probs=144.6
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhcc-----CcEE
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKL-----GIKI 75 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~-----~~~i 75 (358)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+|+++.++|+++|+|++++..+.+++|+.+.. .+ +..+
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~-~~~~~~~~~~i 79 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSK-WSKPKSSLMIV 79 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcc-ccccccCcceE
Confidence 68999999999999999999999999999999999999999999999999999998899999998732 22 2345
Q ss_pred EEeccCCcCCCchHHHHHH--hhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhc-----CCeeEEEe---cCCC-----
Q 018327 76 ICSQETEPLGTAGPLALAR--DKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAH-----GGEASIMV---DEPS----- 140 (358)
Q Consensus 76 ~~~~~~~~~g~~~sl~~~~--~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~-----~~~~~~~~---~~~~----- 140 (358)
.+..+.+..+++++++... ..+ . ++|++++||.+++.++.++++.|.+. ++++++++ +++.
T Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~---~-~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~ 155 (217)
T cd04197 80 IIIMSEDCRSLGDALRDLDAKGLI---R-GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRT 155 (217)
T ss_pred EEEeCCCcCccchHHHHHhhcccc---C-CCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccC
Confidence 5556666778888876543 333 2 38999999999999999999999874 66777776 2222
Q ss_pred -CeeeEEEcCCCCcEEEEeecCCCC--------------------CCCeEEEEEEEEChhhh
Q 018327 141 -KYGVVVMEESTGKVEKFVEKPKLF--------------------VGNKINAGIYLLNPAVL 181 (358)
Q Consensus 141 -~~~~~~~d~~~~~v~~~~ek~~~~--------------------~~~~~~~Giy~~~~~~l 181 (358)
.++++.+|+++++|..+.|||..+ ++++.++|+|+|+++++
T Consensus 156 ~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 156 GEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred CCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 257888887668999999998633 27789999999999874
No 48
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.97 E-value=4.4e-29 Score=216.31 Aligned_cols=211 Identities=29% Similarity=0.464 Sum_probs=165.7
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~ 82 (358)
|||||||.|+||+|+|..+||+|+|++|+|||+|+++++.++|+++++|++++..+.+.+|+.+. .++.+.+..+..
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPDYA 77 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcchh
Confidence 68999999999999999999999999999999999999999999999999999888999888753 356665555555
Q ss_pred cCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-c--CC--CCeeeEEEcCCCCcEEEE
Q 018327 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-D--EP--SKYGVVVMEESTGKVEKF 157 (358)
Q Consensus 83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-~--~~--~~~~~~~~d~~~~~v~~~ 157 (358)
+.|++++++.+++.+ . ++|++++||.+++. ++++.|.+.+++.++++ + +. ..++... +++ +++..+
T Consensus 78 ~~g~~~s~~~~~~~~--~--~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~ 148 (229)
T cd02523 78 ETNNIYSLYLARDFL--D--EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDL-DDA-GVLLGI 148 (229)
T ss_pred hhCcHHHHHHHHHHc--C--CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeee-cCc-cceEee
Confidence 789999999999988 2 38999999998754 56677777777888777 2 11 2233322 222 678888
Q ss_pred eecCCCCC-CCeEEEEEEEEChhhhhhccC---------CCCCcccchHHHHHhcCc--eEEEeecCeEEecCCHHHHHH
Q 018327 158 VEKPKLFV-GNKINAGIYLLNPAVLDRIEL---------RPTSIEKEVFPKIALEGK--LFAMVLPGFWMDIGQPRDYIT 225 (358)
Q Consensus 158 ~ek~~~~~-~~~~~~Giy~~~~~~l~~l~~---------~~~~~~~d~l~~l~~~~~--v~~~~~~~~~~di~t~~dy~~ 225 (358)
.+||.... ..+.++|+|+|+++.++.+.+ ....+..++++.++++.. ++.+.. ++|.|+++++||.+
T Consensus 149 ~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~ 227 (229)
T cd02523 149 ISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLER 227 (229)
T ss_pred cccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHh
Confidence 88886543 568999999999999886632 123344688999887444 444444 89999999999988
Q ss_pred H
Q 018327 226 G 226 (358)
Q Consensus 226 a 226 (358)
+
T Consensus 228 a 228 (229)
T cd02523 228 A 228 (229)
T ss_pred h
Confidence 6
No 49
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.97 E-value=1.2e-28 Score=213.98 Aligned_cols=213 Identities=22% Similarity=0.399 Sum_probs=165.6
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccCh---HHHHHHHHhhhhccCcEEEEec
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP---EVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~---~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
+||||||+|+||+|+|..+||+|+|++|+|||+|+|+.+..+|+++++++++... ..+..++... ..++.+.+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~~~- 77 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL--APNATVVEL- 77 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEEEe-
Confidence 4899999999999999999999999999999999999999999999999987432 1122223221 224555433
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe--cCCCCeeeEEEcCCCCcEEEE
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV--DEPSKYGVVVMEESTGKVEKF 157 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~v~~~ 157 (358)
+..+.|+++++++++..+ ..+++|++++||.+++.++..++..|.+.+.++++++ .....|+++..|++ ++|..+
T Consensus 78 ~~~~~g~~~~l~~a~~~l--~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~d~~-~~v~~~ 154 (231)
T cd04183 78 DGETLGAACTVLLAADLI--DNDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSSHPRWSYVKLDEN-GRVIET 154 (231)
T ss_pred CCCCCcHHHHHHHHHhhc--CCCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCCCCCeEEEEECCC-CCEEEe
Confidence 446789999999999988 3234899999999999999888888877666666554 45567999998886 899999
Q ss_pred eecCCCCCCCeEEEEEEEEChh-hh-hhccC--------CCCCcccchHHHHHhcCc-eEEEee-cCeEEecCCHHHH
Q 018327 158 VEKPKLFVGNKINAGIYLLNPA-VL-DRIEL--------RPTSIEKEVFPKIALEGK-LFAMVL-PGFWMDIGQPRDY 223 (358)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~-~l-~~l~~--------~~~~~~~d~l~~l~~~~~-v~~~~~-~~~~~di~t~~dy 223 (358)
.+|+. .+.+.++|+|+|+++ .| +.+.. ....+..++++.+++++. +.++.+ +++|.|++||+||
T Consensus 155 ~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 155 AEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 88853 467899999999987 43 33321 112234688999988874 999998 6899999999987
No 50
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.96 E-value=8.9e-29 Score=209.66 Aligned_cols=183 Identities=27% Similarity=0.458 Sum_probs=151.1
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccC-------cE
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLG-------IK 74 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~-------~~ 74 (358)
|||||||.|+||+|+|...||+|+|++|+ |||+|+++++..+|+++++|++++..+++.+|+.+. ..|+ +.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~ 79 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGGLF 79 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCCEE
Confidence 68999999999999999999999999999 999999999999999999999999999999999752 2222 23
Q ss_pred EEEec----cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCC
Q 018327 75 IICSQ----ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEES 150 (358)
Q Consensus 75 i~~~~----~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 150 (358)
+.+.. +..+.|++++++.+.+.+...++++|++++||.+++.++.++++.|.++++.+++++.
T Consensus 80 ~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------------- 146 (200)
T cd02508 80 ILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------------- 146 (200)
T ss_pred EeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-------------
Confidence 33221 3457899999999999985333348999999999999999999999887766655411
Q ss_pred CCcEEEEeecCCCCCCCeEEEEEEEEChhhhhhc-cC----CCCCcccchHHHHHhcCceEEEeecCeEEec
Q 018327 151 TGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-EL----RPTSIEKEVFPKIALEGKLFAMVLPGFWMDI 217 (358)
Q Consensus 151 ~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l-~~----~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di 217 (358)
.++|+|+|+++++..+ .. +..++..|+++.++++++++++..+|+|.|+
T Consensus 147 ------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 147 ------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred ------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcEEEEEeCCeEecC
Confidence 6799999999998543 32 2345667999999999899999999999986
No 51
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.95 E-value=1.3e-26 Score=198.39 Aligned_cols=177 Identities=28% Similarity=0.445 Sum_probs=143.0
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhh-----hccCcEE
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE-----AKLGIKI 75 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~-----~~~~~~i 75 (358)
|+|||||||.|+||+|+|...||+|+|++|+|||+|++++|.++|+++++|++++..+++.+|+.+.. ...++.+
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV 80 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence 79999999999999999999999999999999999999999999999999999999888999987521 1123445
Q ss_pred EEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHH--HHhcCCeeEEEe-----cC-------CCC
Q 018327 76 ICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEF--HKAHGGEASIMV-----DE-------PSK 141 (358)
Q Consensus 76 ~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~--~~~~~~~~~~~~-----~~-------~~~ 141 (358)
.+..+....|++++++++.+.+ . ++|++++||.+++.++.+++++ +...+..+++.+ .. ...
T Consensus 81 ~~~~~~~~~Gta~~l~~~~~~i--~--~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (216)
T cd02507 81 ITSDLCESAGDALRLRDIRGLI--R--SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEE 156 (216)
T ss_pred EEccCCCCCccHHHHHHHhhcC--C--CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCC
Confidence 5556667889999999999888 2 2899999999999999999965 444455555554 11 345
Q ss_pred eeeEEEcCCC--CcEEEEeecCCC------------------CCCCeEEEEEEEEChhhh
Q 018327 142 YGVVVMEEST--GKVEKFVEKPKL------------------FVGNKINAGIYLLNPAVL 181 (358)
Q Consensus 142 ~~~~~~d~~~--~~v~~~~ek~~~------------------~~~~~~~~Giy~~~~~~l 181 (358)
++++..|+++ .++..+.+++.. .++++.++|+|+|+++++
T Consensus 157 ~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 157 EDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 7899999876 456666665542 246788999999999864
No 52
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.94 E-value=3.1e-26 Score=195.99 Aligned_cols=177 Identities=28% Similarity=0.542 Sum_probs=143.6
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccCh-HHHHHHHHhhh--hccCcEEEE
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFE--AKLGIKIIC 77 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~--~~~~~~i~~ 77 (358)
|+|||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|++++++++++.. +.+++++.++. ...+..+.+
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 80 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT 80 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence 799999999999999999999999999999999999999999999999999999743 56777776531 122234445
Q ss_pred eccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-c----C-------C----CC
Q 018327 78 SQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-D----E-------P----SK 141 (358)
Q Consensus 78 ~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-~----~-------~----~~ 141 (358)
..+....|++++++++.+.+ . ++|++++||.+++.++..+++.|.+.++.+++++ + . . ..
T Consensus 81 ~~~~~~~gt~~al~~~~~~i--~--~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 156 (214)
T cd04198 81 IVLDEDMGTADSLRHIRKKI--K--KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADE 156 (214)
T ss_pred ecCCCCcChHHHHHHHHhhc--C--CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCC
Confidence 55667889999999999887 2 2899999999999999999999998888888877 1 1 0 23
Q ss_pred eeeEEEcCCCCcEEEEeec-----------------CC-CCCCCeEEEEEEEEChhhh
Q 018327 142 YGVVVMEESTGKVEKFVEK-----------------PK-LFVGNKINAGIYLLNPAVL 181 (358)
Q Consensus 142 ~~~~~~d~~~~~v~~~~ek-----------------~~-~~~~~~~~~Giy~~~~~~l 181 (358)
+.++..|++++++..+... |. ..+.++.++|+|+|+++++
T Consensus 157 ~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 157 RDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 5688889887899877642 11 2357789999999998864
No 53
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=1.1e-25 Score=185.50 Aligned_cols=221 Identities=27% Similarity=0.445 Sum_probs=154.7
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEe-ccChHHHHHHHHhhhhccCcEEEEec
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAI-NYQPEVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~-~~~~~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
|+|||||||.|+||+| +.||||+.++|+|+|+|+|++|+..|++++++|+ ++..+-+..++.++. +...+.+..
T Consensus 4 ~kavILAAG~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~--~~~~iv~N~ 78 (239)
T COG1213 4 MKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYP--FNAKIVINS 78 (239)
T ss_pred eeEEEEecccccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCC--cceEEEeCC
Confidence 7999999999999999 8999999999999999999999999999999999 777788888888642 245666666
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEecCC----CCeeeEEEcCCCCcEE
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDEP----SKYGVVVMEESTGKVE 155 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~v~ 155 (358)
.++..+++.|++.+.+.+. . .|++++||+++.. ++++...+......++...+ ..-.....+++ |++.
T Consensus 79 ~y~ktN~~~Sl~~akd~~~--~--~fii~~sD~vye~---~~~e~l~~a~~~~li~d~~~~~~~~~ea~kv~~e~-G~i~ 150 (239)
T COG1213 79 DYEKTNTGYSLLLAKDYMD--G--RFILVMSDHVYEP---SILERLLEAPGEGLIVDRRPRYVGVEEATKVKDEG-GRIV 150 (239)
T ss_pred CcccCCceeEEeeehhhhc--C--cEEEEeCCEeecH---HHHHHHHhCcCCcEEEeccccccccCceeEEEecC-CEEe
Confidence 7777788999999999993 2 7999999999964 44444444433333333221 11112233444 8888
Q ss_pred EEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEee-----cCeEEecCCHHHHHHHHHHH
Q 018327 156 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVL-----PGFWMDIGQPRDYITGLRLY 230 (358)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~-----~~~~~di~t~~dy~~a~~~~ 230 (358)
.+..+-. .-+..++|++.|+.+.+..+.+....-..--+.++.+.-.+..... ..+|.++|||||+.++.+.+
T Consensus 151 ~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~ 228 (239)
T COG1213 151 EIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVERSEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYL 228 (239)
T ss_pred hhcCCcc--cccceeeeeEEechHHHHHHHHHHhhhhhHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHH
Confidence 8876544 3456899999999987765432110000001222222222222222 35899999999999999887
Q ss_pred HHhhcc
Q 018327 231 LDSLRK 236 (358)
Q Consensus 231 l~~~~~ 236 (358)
......
T Consensus 229 ~~~~~k 234 (239)
T COG1213 229 VPNIKK 234 (239)
T ss_pred HHHHHh
Confidence 765443
No 54
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.94 E-value=2.1e-25 Score=193.35 Aligned_cols=209 Identities=25% Similarity=0.427 Sum_probs=163.3
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~ 82 (358)
|||||||.|+||++ .+||+|+|++|+|||+|+|+.+.+++++++++++++..+.+.+++.+ .++.+ ..+..
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~----~~~~~--~~~~~ 71 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN----PNVEF--VLQEE 71 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC----CCcEE--EECCC
Confidence 69999999999987 68999999999999999999999999999999999887888777764 24443 34555
Q ss_pred cCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEEEE
Q 018327 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVEKF 157 (358)
Q Consensus 83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~~~ 157 (358)
..|++++++++++.+... .++|++++||. +...++..+++.|.+.+.++++.. +++..++.+..|++ ++|..+
T Consensus 72 ~~g~~~ai~~a~~~~~~~-~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~v~~~ 149 (229)
T cd02540 72 QLGTGHAVKQALPALKDF-EGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGN-GKVLRI 149 (229)
T ss_pred CCCCHHHHHHHHHhhccC-CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCC-CCEEEE
Confidence 679999999999988432 34899999998 335668999998887666666554 66778888877765 899999
Q ss_pred eecCCCC----CCCeEEEEEEEEChhhhh-hccC------CCCCcccchHHHHHhcC-ceEEEeecCe--EEecCCHHH
Q 018327 158 VEKPKLF----VGNKINAGIYLLNPAVLD-RIEL------RPTSIEKEVFPKIALEG-KLFAMVLPGF--WMDIGQPRD 222 (358)
Q Consensus 158 ~ek~~~~----~~~~~~~Giy~~~~~~l~-~l~~------~~~~~~~d~l~~l~~~~-~v~~~~~~~~--~~di~t~~d 222 (358)
.++|... ...+.++|+|+|+++.+. .+.. +...+..++++.+++.+ +++++..+|+ |..+++|.+
T Consensus 150 ~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 228 (229)
T cd02540 150 VEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQ 228 (229)
T ss_pred EECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHh
Confidence 9887421 136889999999987554 3432 12234568899998876 4999998764 677888876
No 55
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.93 E-value=2.3e-25 Score=197.01 Aligned_cols=218 Identities=26% Similarity=0.316 Sum_probs=156.2
Q ss_pred CeEEEEecCCccccCcCCC-CCCCcccccCC-cchHHHHHHHHHHCC-CCEEEEEeccCh-HHHHHHHHhhhhccCcEEE
Q 018327 1 MKALILVGGFGTRLRPLTL-SVPKPLVEFAN-KPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKII 76 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~-~~pK~llpi~g-~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~ 76 (358)
|++||||||.|+||+|+|. .+||+|+|++| +|||+++++++...+ +++++|++++.. +.+.+++.+ ....+.
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~~~ 76 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPEEN 76 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCCce
Confidence 8999999999999999996 79999999998 999999999999985 999999999743 445566654 112334
Q ss_pred EeccCCcCCCchHHHHHHhhccCC-CCCcEEEEeCCeeec--cCHHHHHHHHHh---cCCeeEEEe---cCCCCeeeEEE
Q 018327 77 CSQETEPLGTAGPLALARDKLIDD-TGEPFFVLNSDVISE--YPFAEMIEFHKA---HGGEASIMV---DEPSKYGVVVM 147 (358)
Q Consensus 77 ~~~~~~~~g~~~sl~~~~~~i~~~-~~~~~lv~~gD~i~~--~~l~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~ 147 (358)
++.++.+.||+.++..+...+... .++.++++++|.++. .++.++++.+.+ .+..+++.+ .....||++..
T Consensus 77 ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~ 156 (274)
T cd02509 77 IILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEA 156 (274)
T ss_pred EEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEe
Confidence 455677789999999998887531 234789999999775 446666765443 455566665 44478999999
Q ss_pred cCCC-C---cEEEEeecCCCC--------CCCeEEEEEEEEChhhhhhccCC-----------------CC---Ccccch
Q 018327 148 EEST-G---KVEKFVEKPKLF--------VGNKINAGIYLLNPAVLDRIELR-----------------PT---SIEKEV 195 (358)
Q Consensus 148 d~~~-~---~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~l~~l~~~-----------------~~---~~~~d~ 195 (358)
+++. + +|.+|.|||... ...++++|+|+|+++.+....+. .. .+..+.
T Consensus 157 ~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (274)
T cd02509 157 GEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLRLLEEA 236 (274)
T ss_pred CCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHH
Confidence 8641 2 899999999632 12478999999997766432110 00 011122
Q ss_pred HHH----------HHhcCceEEEeecCeEEecCCHHH
Q 018327 196 FPK----------IALEGKLFAMVLPGFWMDIGQPRD 222 (358)
Q Consensus 196 l~~----------l~~~~~v~~~~~~~~~~di~t~~d 222 (358)
++. |.+...+.+++.+..|.|+++.++
T Consensus 237 ~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 237 FAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 222 223345778888888999998753
No 56
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.93 E-value=2.8e-24 Score=187.50 Aligned_cols=213 Identities=23% Similarity=0.292 Sum_probs=154.8
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHC-CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEec
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
|.++|||+|.|+||+ ||+|+|++|+|||+|+++.+.++ ++++++|++++ +.+.+++.+ +++++.+..
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~~~~ 69 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVVMTS 69 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEEEcC
Confidence 468999999999995 59999999999999999999999 89999998864 667777654 356666655
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhc-CCeeEEEe---cCCC---Ceee--EEEc
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAH-GGEASIMV---DEPS---KYGV--VVME 148 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~-~~~~~~~~---~~~~---~~~~--~~~d 148 (358)
+....|++ .+..+.+.+.. ..+.|++++||. +...++..+++.|.+. +.++++++ .++. .++. +..|
T Consensus 70 ~~~~~gt~-~~~~~~~~~~~-~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 147 (239)
T cd02517 70 PDHPSGTD-RIAEVAEKLDA-DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLD 147 (239)
T ss_pred cccCchhH-HHHHHHHhcCC-CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEEC
Confidence 55556776 46666666632 124799999997 4455689999988765 55666655 3333 3333 5566
Q ss_pred CCCCcEEEEeecCC-------CCCCCeEEEEEEEEChhhhhhccCCC-CCcc-cchHH--HHHhcCc-eEEEeecCeEEe
Q 018327 149 ESTGKVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIELRP-TSIE-KEVFP--KIALEGK-LFAMVLPGFWMD 216 (358)
Q Consensus 149 ~~~~~v~~~~ek~~-------~~~~~~~~~Giy~~~~~~l~~l~~~~-~~~~-~d~l~--~l~~~~~-v~~~~~~~~~~d 216 (358)
++ ++|..|.++|. .+.+.+.++|+|+|+++.++.+.... ..+. .+.+. .+++++. +.++..++.|.+
T Consensus 148 ~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~ 226 (239)
T cd02517 148 KD-GYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIG 226 (239)
T ss_pred CC-CCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCC
Confidence 65 89998886543 12467899999999999999875421 1111 23332 3455554 888888889999
Q ss_pred cCCHHHHHHHHH
Q 018327 217 IGQPRDYITGLR 228 (358)
Q Consensus 217 i~t~~dy~~a~~ 228 (358)
++||+||.++++
T Consensus 227 i~t~~dl~~a~~ 238 (239)
T cd02517 227 VDTPEDLERVEA 238 (239)
T ss_pred CCCHHHHHHHHh
Confidence 999999999864
No 57
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.93 E-value=6.5e-24 Score=185.88 Aligned_cols=214 Identities=21% Similarity=0.247 Sum_probs=153.8
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET 81 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~ 81 (358)
.++|||+|.|+||. ||+|+|++|+|||+|+++.+.++++++++|++++ +.+.+++.+ +++.+.+..+.
T Consensus 4 ~~iIlA~g~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~----~~~~v~~~~~~ 71 (245)
T PRK05450 4 LIIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEA----FGGEVVMTSPD 71 (245)
T ss_pred EEEEecCCCCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH----cCCEEEECCCc
Confidence 48999999999994 5999999999999999999999999999998864 667666654 35666665555
Q ss_pred CcCCCchHHHHHHhhccCCCCCcEEEEeCCe-ee-ccCHHHHHHHHHhcCCeeEEEe---------cCCCCeeeEEEcCC
Q 018327 82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMV---------DEPSKYGVVVMEES 150 (358)
Q Consensus 82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~-~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~d~~ 150 (358)
...|+.. +..+...+.....+.+++++||. +. ...++.+++.+..++.+.++++ .+++.++++ +|++
T Consensus 72 ~~~gt~~-~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d~~ 149 (245)
T PRK05450 72 HPSGTDR-IAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LDAD 149 (245)
T ss_pred CCCchHH-HHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eCCC
Confidence 5556654 33344343212233689999999 44 4558999998876655555443 344556655 7776
Q ss_pred CCcEEEEeecCCC----------CCCCeEEEEEEEEChhhhhhccCCCCC-c--c--cchHHHHHhcCceEEEeecC-eE
Q 018327 151 TGKVEKFVEKPKL----------FVGNKINAGIYLLNPAVLDRIELRPTS-I--E--KEVFPKIALEGKLFAMVLPG-FW 214 (358)
Q Consensus 151 ~~~v~~~~ek~~~----------~~~~~~~~Giy~~~~~~l~~l~~~~~~-~--~--~d~l~~l~~~~~v~~~~~~~-~~ 214 (358)
|+|.+|.+||.. ..+.+.++|+|+|+++.++.+...... + . .++++.+.+..+++++..++ +|
T Consensus 150 -g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w 228 (245)
T PRK05450 150 -GRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVVEEAPS 228 (245)
T ss_pred -CcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCCceEEEEeCCCCC
Confidence 899999999831 235899999999999999877542211 1 1 12233333445699999986 99
Q ss_pred EecCCHHHHHHHHHHH
Q 018327 215 MDIGQPRDYITGLRLY 230 (358)
Q Consensus 215 ~di~t~~dy~~a~~~~ 230 (358)
.|++||+||.++++.+
T Consensus 229 ~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 229 IGVDTPEDLERVRALL 244 (245)
T ss_pred CCcCCHHHHHHHHHHh
Confidence 9999999999998653
No 58
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.92 E-value=1.1e-23 Score=199.26 Aligned_cols=223 Identities=23% Similarity=0.322 Sum_probs=157.1
Q ss_pred CeEEEEecCCccccCcCCCC-CCCcccccCC-cchHHHHHHHHHHCCCCEEEEEeccCh-HHHHHHHHhhhhccCcEE-E
Q 018327 1 MKALILVGGFGTRLRPLTLS-VPKPLVEFAN-KPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKI-I 76 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~-~pK~llpi~g-~pli~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i-~ 76 (358)
|.+||||||.|+||+|+|.. +||+|+|+.| +|||+|+++.|...++++++|+++... ..+.+.+.++ +.+. .
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~~----~~~~~~ 76 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLREI----GKLASN 76 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHHc----CCCcce
Confidence 78999999999999999986 9999999976 899999999999999999999998643 2344455442 3332 3
Q ss_pred EeccCCcCCCchHHHHHHhhccC--CCCCcEEEEeCCeeecc--CHHHHHHHH---HhcCCeeEEEe---cCCCCeeeEE
Q 018327 77 CSQETEPLGTAGPLALARDKLID--DTGEPFFVLNSDVISEY--PFAEMIEFH---KAHGGEASIMV---DEPSKYGVVV 146 (358)
Q Consensus 77 ~~~~~~~~g~~~sl~~~~~~i~~--~~~~~~lv~~gD~i~~~--~l~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~ 146 (358)
++.++.+.||+.++..+...+.+ ..++.+++++||.+... +|.++++++ .+.+..+++.. .....||++.
T Consensus 77 ~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~ 156 (468)
T TIGR01479 77 IILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIR 156 (468)
T ss_pred EEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEE
Confidence 55677788999988887766532 22325899999986543 378887765 33344444444 4447899999
Q ss_pred EcCC-----CCcEEEEeecCCCC--------CCCeEEEEEEEEChhhhh------------hccCC-----C----CCcc
Q 018327 147 MEES-----TGKVEKFVEKPKLF--------VGNKINAGIYLLNPAVLD------------RIELR-----P----TSIE 192 (358)
Q Consensus 147 ~d~~-----~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~l~------------~l~~~-----~----~~~~ 192 (358)
.+++ .++|..|.|||... .+.++++|+|+|+.+.+. .+... . ..+.
T Consensus 157 ~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 236 (468)
T TIGR01479 157 RGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPDLDFIRLD 236 (468)
T ss_pred eCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCCcccceeC
Confidence 8741 25899999999631 135799999999955443 22210 0 1111
Q ss_pred cchHH---------HHH-hcCceEEEeecCeEEecCCHHHHHHHH
Q 018327 193 KEVFP---------KIA-LEGKLFAMVLPGFWMDIGQPRDYITGL 227 (358)
Q Consensus 193 ~d~l~---------~l~-~~~~v~~~~~~~~~~di~t~~dy~~a~ 227 (358)
.+.++ .+. +...+++.+.+..|.|+++++++.+..
T Consensus 237 ~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 237 KEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 23344 222 334578888888899999999998874
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.90 E-value=3.4e-22 Score=174.20 Aligned_cols=208 Identities=22% Similarity=0.282 Sum_probs=150.6
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHC-CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
.|+|||+|.|+||+ +|+|+|++|+|||+|+++.+.++ ++++++|++++ +++.+++.+ +++++.+..+
T Consensus 4 ~aiIlA~g~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~~~~~ 71 (238)
T PRK13368 4 VVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVVMTSD 71 (238)
T ss_pred EEEEecCCCCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEEecCc
Confidence 48999999999994 49999999999999999999999 79999998864 667777664 3566655555
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCC-eeEEEe---c------CCCCeeeEEEc
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGG-EASIMV---D------EPSKYGVVVME 148 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~-~~~~~~---~------~~~~~~~~~~d 148 (358)
....|+. .+..+...+ .. +.|++++||. +...++..+++.+.+.+. .+++++ + ++..+++ ..+
T Consensus 72 ~~~~g~~-~~~~a~~~~--~~-d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~ 146 (238)
T PRK13368 72 DHLSGTD-RLAEVMLKI--EA-DIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV-VVD 146 (238)
T ss_pred cCCCccH-HHHHHHHhC--CC-CEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-EEC
Confidence 5555665 566666665 33 4899999997 446679999998876543 333333 1 2444444 445
Q ss_pred CCCCcEEEEeecCCC------CCCCeEEEEEEEEChhhhhhccCC-CCC---ccc-chHHHHH-hcCceEEEeecCeEEe
Q 018327 149 ESTGKVEKFVEKPKL------FVGNKINAGIYLLNPAVLDRIELR-PTS---IEK-EVFPKIA-LEGKLFAMVLPGFWMD 216 (358)
Q Consensus 149 ~~~~~v~~~~ek~~~------~~~~~~~~Giy~~~~~~l~~l~~~-~~~---~~~-d~l~~l~-~~~~v~~~~~~~~~~d 216 (358)
++ |++..+.++|.. ..+.+.++|+|+|++++|..+... ... +.. +++ .++ ...+++++..+++|.|
T Consensus 147 ~~-g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~D 224 (238)
T PRK13368 147 KN-GDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIG 224 (238)
T ss_pred CC-CCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCC
Confidence 55 899999865421 124478999999999999987432 111 222 555 454 4445999998899999
Q ss_pred cCCHHHHHHHHH
Q 018327 217 IGQPRDYITGLR 228 (358)
Q Consensus 217 i~t~~dy~~a~~ 228 (358)
++||+||.+++.
T Consensus 225 I~t~~Dl~~a~~ 236 (238)
T PRK13368 225 VDTPEDLERVRA 236 (238)
T ss_pred CCCHHHHHHHHH
Confidence 999999999865
No 60
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=4.2e-21 Score=151.69 Aligned_cols=214 Identities=21% Similarity=0.319 Sum_probs=148.0
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|+|||||||.|+|+.|+|...||+|+.+.|+|||+++|+.|..+|+.+|+||+++..++ -+||.+ ++++.+.+.+.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~-FeYLkd---Ky~vtLvyN~k 76 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQ-FEYLKD---KYDVTLVYNPK 76 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHH-HHHHHH---hcCeEEEeCch
Confidence 89999999999999999999999999999999999999999999999999999997554 456664 56899999999
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEeec
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEK 160 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~ek 160 (358)
....++..+++++++.++ +.-++.+|.++.. .+...+.....-.++..+....-..+..+.+ ++|+++.-.
T Consensus 77 Y~~yNn~ySlyla~d~l~-----ntYiidsDnyl~k---Nif~~~~~~S~Yfav~~~~~tnEw~l~~~~~-~ki~~v~Ig 147 (231)
T COG4750 77 YREYNNIYSLYLARDFLN-----NTYIIDSDNYLTK---NIFLTKESHSKYFAVYRSGKTNEWLLIYNSD-GKITRVDIG 147 (231)
T ss_pred HHhhhhHHHHHHHHHHhc-----ccEEeccchHhhh---hhhhcCcccceEEEEEecCCCceeEEEEcCC-CcEEEEEec
Confidence 888999999999999993 4568899997643 2222222111112222244444345555665 888887543
Q ss_pred CCCCCCCeEEEEEEEEChhhhhhcc----------CCCCCcccchHHHHHhcCceEEEee-cCeEEecCCHHHHHHHHHH
Q 018327 161 PKLFVGNKINAGIYLLNPAVLDRIE----------LRPTSIEKEVFPKIALEGKLFAMVL-PGFWMDIGQPRDYITGLRL 229 (358)
Q Consensus 161 ~~~~~~~~~~~Giy~~~~~~l~~l~----------~~~~~~~~d~l~~l~~~~~v~~~~~-~~~~~di~t~~dy~~a~~~ 229 (358)
....++-+|+..|+...-+.+. +....+..++.-.-+++-.++.-.. ++...++++.++|.+....
T Consensus 148 ---g~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~ 224 (231)
T COG4750 148 ---GLNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQK 224 (231)
T ss_pred ---CcccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhh
Confidence 2345788899999876544331 1111222233222223323333222 3467889999999887654
Q ss_pred H
Q 018327 230 Y 230 (358)
Q Consensus 230 ~ 230 (358)
+
T Consensus 225 ~ 225 (231)
T COG4750 225 F 225 (231)
T ss_pred h
Confidence 3
No 61
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.83 E-value=2.1e-20 Score=159.83 Aligned_cols=140 Identities=23% Similarity=0.304 Sum_probs=116.1
Q ss_pred cchHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHHHHhhcc---------------cCcccccCCcEEecceEECCC
Q 018327 193 KEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK---------------KSSLKLATGANIVGNVLVHES 257 (358)
Q Consensus 193 ~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~l~~~~~---------------~~~~~~~~~~~i~~~~~i~~~ 257 (358)
.|.++.|.+.+ .+..+|||.|+ ++|+++|+.+|..+.. .....+.+++.+.++++|+++
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~ 104 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDN 104 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCC
Confidence 46677777665 78888999999 9999999999976532 122356788888888889999
Q ss_pred CEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEccCCEECCccEEcCccEECCC
Q 018327 258 AQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHSTVGQWARVENMTILGED 327 (358)
Q Consensus 258 ~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~ig~~~~i~~~~~i~~~ 327 (358)
+.|++++.|.++++||++|.|+.++.|. +++|+++|.|+.++.|.+ ++|+++|+||.++.|.+++.||++
T Consensus 105 ~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~ 184 (231)
T TIGR03532 105 AVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKG 184 (231)
T ss_pred CEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCC
Confidence 9999999888889999999999999997 899999999999999974 678888888888888887888888
Q ss_pred cEECCceEEcC
Q 018327 328 VHVCDEIYSNG 338 (358)
Q Consensus 328 ~~i~~~~~i~~ 338 (358)
++|++++.+.+
T Consensus 185 ~~IgagsvV~~ 195 (231)
T TIGR03532 185 AVVAAGAIVTE 195 (231)
T ss_pred CEECCCCEEcc
Confidence 88888877753
No 62
>PLN02917 CMP-KDO synthetase
Probab=99.81 E-value=7.3e-18 Score=149.87 Aligned_cols=213 Identities=18% Similarity=0.145 Sum_probs=145.5
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET 81 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~ 81 (358)
.+||||+|.|+||. +|.|+|++|+|||+|+++.+..++..+.++| ..+.+++.+++.++ ++.+....+.
T Consensus 49 ~aIIpA~G~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~~----~v~vi~~~~~ 117 (293)
T PLN02917 49 VGIIPARFASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVV-ATDDERIAECCRGF----GADVIMTSES 117 (293)
T ss_pred EEEEecCCCCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHHc----CCEEEeCCcc
Confidence 48999999999994 4999999999999999999998774444333 34457777777642 5555544445
Q ss_pred CcCCCchHHHHHHhhccCCCCCcEEEEeCCee--eccCHHHHHHHHHhcCCeeEEEe-------cCCCCeeeEE--EcCC
Q 018327 82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYPFAEMIEFHKAHGGEASIMV-------DEPSKYGVVV--MEES 150 (358)
Q Consensus 82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i--~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~d~~ 150 (358)
.+.|+... ..+.+.++. ..+.+++++||.. ....++.+++.+.+. .+..+++ +++..||.+. .|++
T Consensus 118 ~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~ 194 (293)
T PLN02917 118 CRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCVVDNQ 194 (293)
T ss_pred cCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEEECCC
Confidence 55566554 677777743 2348999999993 344589999987654 3332222 6788899874 6765
Q ss_pred CCcEEEEeecCC----C-----CCCCeEEEEEEEEChhhhhhccCC-C-----CCcccchHHHHHhcC-ceEEEeecCeE
Q 018327 151 TGKVEKFVEKPK----L-----FVGNKINAGIYLLNPAVLDRIELR-P-----TSIEKEVFPKIALEG-KLFAMVLPGFW 214 (358)
Q Consensus 151 ~~~v~~~~ek~~----~-----~~~~~~~~Giy~~~~~~l~~l~~~-~-----~~~~~d~l~~l~~~~-~v~~~~~~~~~ 214 (358)
|++.+|..++- + ....+.++|+|.|+.+.|..+..- . ..+..|+. ++++| ++..+..+...
T Consensus 195 -g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~--~le~G~~i~~~~~~~~~ 271 (293)
T PLN02917 195 -GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLK--VLENGYKMKVIKVDHEA 271 (293)
T ss_pred -CeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHH--HHhCCCceEEEEeCCCC
Confidence 88776664311 1 122478999999999988866421 1 12223443 33444 47777666567
Q ss_pred EecCCHHHHHHHHHHHH
Q 018327 215 MDIGQPRDYITGLRLYL 231 (358)
Q Consensus 215 ~di~t~~dy~~a~~~~l 231 (358)
.-+||++|+.++.+.+.
T Consensus 272 ~GVnt~~dL~~ae~~~~ 288 (293)
T PLN02917 272 HGVDTPEDVEKIEALMR 288 (293)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 78999999999987653
No 63
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=3.5e-18 Score=147.23 Aligned_cols=225 Identities=25% Similarity=0.355 Sum_probs=152.0
Q ss_pred CeEEEEecCCccccCcCC-CCCCCccccc-CCcchHHHHHHHHHH-CCCCEEEEEeccCh-HHHHHHHHhhhhccCcEEE
Q 018327 1 MKALILVGGFGTRLRPLT-LSVPKPLVEF-ANKPMILHQIEALKA-VGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKII 76 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t-~~~pK~llpi-~g~pli~~~l~~l~~-~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~ 76 (358)
|..||||+|.|+||||++ +..||+||++ ++++|++.+++++.. .+.+++++|+++.+ ..+++.+.++....-..
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~-- 79 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAG-- 79 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccc--
Confidence 679999999999999995 6799999999 569999999999988 56899999999753 45666666533221112
Q ss_pred EeccCCcCCCchHHHHHHhhccCCCCC-cEEEEeCCeeeccC--HHHHHHHHHh---cCCeeEEEe---cCCCCeeeEEE
Q 018327 77 CSQETEPLGTAGPLALARDKLIDDTGE-PFFVLNSDVISEYP--FAEMIEFHKA---HGGEASIMV---DEPSKYGVVVM 147 (358)
Q Consensus 77 ~~~~~~~~g~~~sl~~~~~~i~~~~~~-~~lv~~gD~i~~~~--l~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~ 147 (358)
++.++..++|+-++..+.-.+.+...+ -++++++|++.... +.+.++...+ .+.-.|+.. ....+|||+..
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~ 159 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIET 159 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeec
Confidence 345666788998888877665443322 47899999966533 6666655433 333333333 33478999997
Q ss_pred cCC-----CCcEEEEeecCCCC-------CC-CeEEEEEEEEChhhhh-hccCC-C----------CCc-----c---cc
Q 018327 148 EES-----TGKVEKFVEKPKLF-------VG-NKINAGIYLLNPAVLD-RIELR-P----------TSI-----E---KE 194 (358)
Q Consensus 148 d~~-----~~~v~~~~ek~~~~-------~~-~~~~~Giy~~~~~~l~-~l~~~-~----------~~~-----~---~d 194 (358)
.+. .-+|.+|.|||... .+ .++++|+|+|+...+. .+..- + ... . .+
T Consensus 160 G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e 239 (333)
T COG0836 160 GESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNE 239 (333)
T ss_pred CcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccchhcccHH
Confidence 542 23689999999721 23 5799999999987553 33210 0 000 0 00
Q ss_pred h----------HHHHHhcCceEEEeecCeEEecCCHHHHHHHH
Q 018327 195 V----------FPKIALEGKLFAMVLPGFWMDIGQPRDYITGL 227 (358)
Q Consensus 195 ~----------l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~ 227 (358)
. +.-|.+...+...+.+-.|-|+++...+.+..
T Consensus 240 ~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~ 282 (333)
T COG0836 240 AYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL 282 (333)
T ss_pred HHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence 0 11233445677778887899999988776653
No 64
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.78 E-value=6.1e-18 Score=158.60 Aligned_cols=224 Identities=21% Similarity=0.282 Sum_probs=148.6
Q ss_pred CeEEEEecCCccccCcCCCC-CCCcccccC-CcchHHHHHHHHHHCCCCEEEEEeccC-hHHHHHHHHhhhhccCcEEEE
Q 018327 1 MKALILVGGFGTRLRPLTLS-VPKPLVEFA-NKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIIC 77 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~-~pK~llpi~-g~pli~~~l~~l~~~gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~ 77 (358)
|.+||||||.|+||||++.. .||+|+|+. ++|||+++++++...++.+.++|++.. ...+++.+.++.. ..-.+
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~---~~~~i 82 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK---LTENI 82 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC---ccccE
Confidence 67999999999999999987 799999995 579999999999988888777888863 3455556654321 01133
Q ss_pred eccCCcCCCchHHHHHHhhccCCC---CCcEEEEeCCeeeccC--HHHHHHHHHh---cCCeeEEEe---cCCCCeeeEE
Q 018327 78 SQETEPLGTAGPLALARDKLIDDT---GEPFFVLNSDVISEYP--FAEMIEFHKA---HGGEASIMV---DEPSKYGVVV 146 (358)
Q Consensus 78 ~~~~~~~g~~~sl~~~~~~i~~~~---~~~~lv~~gD~i~~~~--l~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~ 146 (358)
+.++...+|+.++..+...+.+.. +.-++++++|.+.... |.+.++...+ .+.-+|+.. .....|||+.
T Consensus 83 i~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~ 162 (478)
T PRK15460 83 ILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIR 162 (478)
T ss_pred EecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEE
Confidence 456667888888777665554321 2357899999965432 5555554332 233333333 3447899999
Q ss_pred EcCCC--------CcEEEEeecCCC-------CCC-CeEEEEEEEEChhhhh-hccCC-----------------CCC--
Q 018327 147 MEEST--------GKVEKFVEKPKL-------FVG-NKINAGIYLLNPAVLD-RIELR-----------------PTS-- 190 (358)
Q Consensus 147 ~d~~~--------~~v~~~~ek~~~-------~~~-~~~~~Giy~~~~~~l~-~l~~~-----------------~~~-- 190 (358)
.++.. .+|.+|.|||.. ..+ .++++|+|+|+.+.+. .|..- ...
T Consensus 163 ~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~ 242 (478)
T PRK15460 163 RGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDLDFI 242 (478)
T ss_pred eCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhccCcccce
Confidence 76431 269999999972 123 4789999999987554 22110 000
Q ss_pred -cccchHHH----------HHhcCceEEEeecCeEEecCCHHHHHHHH
Q 018327 191 -IEKEVFPK----------IALEGKLFAMVLPGFWMDIGQPRDYITGL 227 (358)
Q Consensus 191 -~~~d~l~~----------l~~~~~v~~~~~~~~~~di~t~~dy~~a~ 227 (358)
+..+.++. |.+...+...+.+--|-|+++..++.+..
T Consensus 243 ~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 243 RVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred eeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 00111111 22334577777777899999998877653
No 65
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.76 E-value=2.5e-17 Score=136.52 Aligned_cols=179 Identities=22% Similarity=0.334 Sum_probs=123.2
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|+|+|||||+|+||++ .||+|+|++|+|||+|+++.+..++++++++++++..+.++.++.+. ...+ ..
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~----~~~~---~~ 69 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSA----YKDY---KN 69 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhc----CcEE---Ee
Confidence 8999999999999976 79999999999999999999999999999999998878888888752 1112 22
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee--eccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEe
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFV 158 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~ 158 (358)
....|...++..+.+.+. ..++|++++||.. ....++.+++.+...+..+..++ ..++ . .
T Consensus 70 ~~g~G~~~~l~~al~~~~--~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~---------~~~~--~-----~ 131 (183)
T TIGR00454 70 ASGKGYIEDLNECIGELY--FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVM---------IPKE--K-----Y 131 (183)
T ss_pred cCCCCHHHHHHHHhhccc--CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEE---------eccc--c-----c
Confidence 445677788888887652 2349999999994 45568999998876554433322 0000 0 0
Q ss_pred ecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHHH
Q 018327 159 EKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGL 227 (358)
Q Consensus 159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~ 227 (358)
.+|.-....++.+|+-++.+..-.+ +++.+ +..+.-...++|++|+..+.
T Consensus 132 ~~~~~~~~~~~p~g~n~~~~~~~~~------------------~~~~~-~~~~~~~~nvnt~~d~~~~~ 181 (183)
T TIGR00454 132 PNPSIDFNGLVPAGVNIVSSKNGYQ------------------EEEII-MVIDELIVNINTKDDLKLAE 181 (183)
T ss_pred CCCccccccEeeeEEEEecCCCccc------------------ceeee-eccccceEecCCHHHHHHhh
Confidence 1111111126889999998752111 00110 22234688999999997664
No 66
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.75 E-value=3.1e-16 Score=135.95 Aligned_cols=206 Identities=19% Similarity=0.228 Sum_probs=137.3
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~ 82 (358)
+||+|+|.|+||. +|+|++++|+|||+|+++.+..+++++++|+++. +++.+++.+ +++.+.......
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~----~g~~~v~~~~~~ 69 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATDD--ESVAQTCQK----FGIEVCMTSKHH 69 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHH----cCCEEEEeCCCC
Confidence 7999999999994 6999999999999999999999899999998864 456555554 355554433333
Q ss_pred cCCCchHHHHHHhhccCCCCCcEEEEeCCee-e-ccCHHHHHHHHHhcCCeeEEEe---cC------CCCeeeEEEcCCC
Q 018327 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVI-S-EYPFAEMIEFHKAHGGEASIMV---DE------PSKYGVVVMEEST 151 (358)
Q Consensus 83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~-~~~l~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~d~~~ 151 (358)
..|+ +++..+.+.+.....+.++++.||.. . ...++++++.+.+...+++.++ .+ |.. ..+..|.+
T Consensus 70 ~~Gt-~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~-vk~v~~~~- 146 (238)
T TIGR00466 70 NSGT-ERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNA-VKVVLDSQ- 146 (238)
T ss_pred CChh-HHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCc-eEEEeCCC-
Confidence 3343 34444444432122336888999993 3 3458899988755444444443 22 222 22333654
Q ss_pred CcEEEEeecCC----C-------CCC--CeEEEEEEEEChhhhhhccCCC-CCcc----cchHHHHHhcCceEEEeecCe
Q 018327 152 GKVEKFVEKPK----L-------FVG--NKINAGIYLLNPAVLDRIELRP-TSIE----KEVFPKIALEGKLFAMVLPGF 213 (358)
Q Consensus 152 ~~v~~~~ek~~----~-------~~~--~~~~~Giy~~~~~~l~~l~~~~-~~~~----~d~l~~l~~~~~v~~~~~~~~ 213 (358)
|++..|...+- . +.. .+...|+|.|++++|+.+..-+ ..++ -+.++.|....++.....++.
T Consensus 147 g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~ 226 (238)
T TIGR00466 147 GYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEV 226 (238)
T ss_pred CeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCC
Confidence 78777766521 1 111 3568999999999999875432 2222 255777777777888777665
Q ss_pred -EEecCCHHHH
Q 018327 214 -WMDIGQPRDY 223 (358)
Q Consensus 214 -~~di~t~~dy 223 (358)
-..+|||+|+
T Consensus 227 ~~~~vdt~~d~ 237 (238)
T TIGR00466 227 PSVGVDTQEDL 237 (238)
T ss_pred CCCCCCChHHc
Confidence 4699999986
No 67
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.71 E-value=1.2e-15 Score=120.42 Aligned_cols=166 Identities=27% Similarity=0.438 Sum_probs=122.4
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|.++|+|+|+|+||.. .-|||++++|||||+|.++.+.+ .++++++.++++.+.++.|+.++ ++++. .
T Consensus 1 m~~iiMAGGrGtRmg~----~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~----gv~vi---~ 68 (177)
T COG2266 1 MMAIIMAGGRGTRMGR----PEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV----GVKVI---E 68 (177)
T ss_pred CceEEecCCcccccCC----CcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc----CceEE---E
Confidence 8899999999999984 46999999999999999999998 79999999999999999999974 45543 2
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-cc-CHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEe
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EY-PFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFV 158 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~ 158 (358)
....|-...+..+.+.+ .. |+|++++|+.+ +. .+..+++.+..-..+...+ -.. |+
T Consensus 69 tpG~GYv~Dl~~al~~l--~~--P~lvvsaDLp~l~~~~i~~vi~~~~~~~~p~~~~------------~~~-G~----- 126 (177)
T COG2266 69 TPGEGYVEDLRFALESL--GT--PILVVSADLPFLNPSIIDSVIDAAASVEVPIVTV------------VKA-GR----- 126 (177)
T ss_pred cCCCChHHHHHHHHHhc--CC--ceEEEecccccCCHHHHHHHHHHHhhccCceeEe------------ecc-Cc-----
Confidence 33458889999999998 43 99999999944 32 3777777765111111110 010 21
Q ss_pred ecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327 159 EKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL 231 (358)
Q Consensus 159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~~l 231 (358)
..+|+-++.+ . + +++.+....++..++++|++|+.++++.+-
T Consensus 127 ----------v~~Glni~~~--~-~------------------~~~~~~i~~~~la~NVNT~eDl~~a~~ll~ 168 (177)
T COG2266 127 ----------VPVGLNIVGG--K-Q------------------EEEILEIDNPELAVNVNTPEDLKKAERLLR 168 (177)
T ss_pred ----------cceeeEeecC--C-C------------------cceeEEeeccceeEecCCHHHHHHHHHHHh
Confidence 4577777775 0 0 123344455567899999999999987654
No 68
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.70 E-value=1.7e-16 Score=135.82 Aligned_cols=119 Identities=11% Similarity=0.195 Sum_probs=94.3
Q ss_pred cccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEe---------ccEEcc
Q 018327 239 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS---------SSIIGW 308 (358)
Q Consensus 239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~---------~~~i~~ 308 (358)
..++.+++.+.++++|++++.|.++ .+..++.||++|.|+.++.|+ ++.||+||.|..++.|. +++|++
T Consensus 100 ~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgD 178 (269)
T TIGR00965 100 GFRVVPGAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 178 (269)
T ss_pred CEEECCCcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECC
Confidence 4445677777777777777777765 455678888888888888888 68889999998888884 379999
Q ss_pred CCEECCccEEcCccEECCCcEECCceEEc-CcEEccCc---eeccCCCCCcccC
Q 018327 309 HSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHK---EIKSSILKPEIVM 358 (358)
Q Consensus 309 ~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~---~i~~~~~~~~~~~ 358 (358)
+|+||+++.|.++++||++++||++++|. +..+.+.+ .+.+++|+++||+
T Consensus 179 nv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~ 232 (269)
T TIGR00965 179 NCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVV 232 (269)
T ss_pred CCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEe
Confidence 99999999999999999999999999996 55555443 4466788887763
No 69
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.68 E-value=1.9e-15 Score=129.75 Aligned_cols=207 Identities=17% Similarity=0.198 Sum_probs=134.4
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHC-CCCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEec
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
.+||||||.|+||+. ..||+|++++|+|||+|+++.+..+ ++++++|++++.. +.+.+.+.. ... +.+..
T Consensus 1 ~aiIlAaG~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~~~--~~~~~ 72 (217)
T TIGR00453 1 SAVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---RAV--PKIVA 72 (217)
T ss_pred CEEEEcCcccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---CCc--EEEeC
Confidence 379999999999975 4799999999999999999999998 7999999998753 344443332 111 22222
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEE
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKF 157 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 157 (358)
. ..+..++++.+++.++ ..+.++++.||. +....++.+++.+.+.+. +.+.+ +...++..+|++ |.+..+
T Consensus 73 ~--~~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~-~~~~~--~~~~~v~~~~~~-g~~~~~ 144 (217)
T TIGR00453 73 G--GDTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKAGA-AILAL--PVADTLKRVEAD-GFIVET 144 (217)
T ss_pred C--CchHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhCCc-EEEeE--eccceEEEEcCC-Cceeec
Confidence 1 2245678888888772 234899999999 334458999988765422 12222 223345555654 777776
Q ss_pred eecCCCCCCCeEEEEEEEEChhhhhhccC---CCCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHH
Q 018327 158 VEKPKLFVGNKINAGIYLLNPAVLDRIEL---RPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLR 228 (358)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~---~~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~ 228 (358)
.++.. -....+ .|.|+.+.+..+.. +......|....+...+ ++..+..+....+++||+|+..+..
T Consensus 145 ~~r~~---~~~~~~-p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 145 VDREG---LWAAQT-PQAFRTELLKKALARAKEEGFEITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred CChHH---eEEEeC-CCcccHHHHHHHHHHHHhcCCCCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence 65321 112333 68999888876532 11222244444444444 4666666666779999999987754
No 70
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.68 E-value=1.5e-15 Score=124.10 Aligned_cols=110 Identities=24% Similarity=0.406 Sum_probs=90.2
Q ss_pred cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327 241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN 320 (358)
Q Consensus 241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 320 (358)
.+.+++.+.++++|++++.|++++.|.++++||++|.|++++.|.+|+|++++.|++++.+.+++|++++.|++++.+.+
T Consensus 25 ~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~ 104 (163)
T cd05636 25 IVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITAN 104 (163)
T ss_pred EECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcc
Confidence 45667777788888888888888888878899999999999999899999999999999998899999999999988743
Q ss_pred ------------------------ccEECCCcEECCceEEc-CcEEccCceeccC
Q 018327 321 ------------------------MTILGEDVHVCDEIYSN-GGVVLPHKEIKSS 350 (358)
Q Consensus 321 ------------------------~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~ 350 (358)
+++|++++.||.++.+. +..+++++.|..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~ag 159 (163)
T cd05636 105 LRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPG 159 (163)
T ss_pred cCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCC
Confidence 47888888888887775 7777777776543
No 71
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.67 E-value=1.1e-15 Score=131.29 Aligned_cols=209 Identities=15% Similarity=0.182 Sum_probs=134.6
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
.+||||||.|+||+. ..||+|+|++|+|||+|+++.+..++ +++++|++++........+..+.. ...+.+...
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~--~~~~~~~~~ 76 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGL--SKVVKIVEG 76 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhccc--CCCeEEECC
Confidence 489999999999976 47999999999999999999999987 999999998765444433322111 112222222
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-e-ccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEe
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-S-EYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFV 158 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~ 158 (358)
+.+...+++.+.+.+.....+.++++.||.. . ...++.+++.+.+.+....+. +...+....|++ |.+.++.
T Consensus 77 --~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~---~~~~~~~~~~~~-g~~~~~~ 150 (218)
T cd02516 77 --GATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAV---PVTDTIKRVDDD-GVVVETL 150 (218)
T ss_pred --chHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEE---eccccEEEecCC-CceeecC
Confidence 2356788999998874113347899999983 3 345899999886554322222 112223334554 7888776
Q ss_pred ecCCCCCCCeEEEEEEEEChhhhhhccCC---CCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHH
Q 018327 159 EKPKLFVGNKINAGIYLLNPAVLDRIELR---PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYIT 225 (358)
Q Consensus 159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~---~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~ 225 (358)
+.. .-....++ ++|+.+.+..+... ...+..|....+.+.+ ++.....+..-.+++||+||..
T Consensus 151 ~r~---~~~~~~~P-~~f~~~~~~~~~~~~~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 151 DRE---KLWAAQTP-QAFRLDLLLKAHRQASEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred ChH---HhhhhcCC-CcccHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 542 22234555 89998888766421 1223344444444443 4666555555569999999853
No 72
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.67 E-value=1.9e-15 Score=119.94 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=96.8
Q ss_pred ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEccCCE
Q 018327 242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHST 311 (358)
Q Consensus 242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~ 311 (358)
+.+++.+.++++|++++.|.+++.+..++.||++|.|+.++.|. ++.|+++|.|++++.|.+ ++|+++++
T Consensus 4 i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~ 83 (139)
T cd03350 4 VPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVF 83 (139)
T ss_pred cCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCE
Confidence 56778888888888888888888888888888888888888887 788999999999998863 68999999
Q ss_pred ECCccEEcCccEECCCcEECCceEEc-CcEE---ccCceeccCCCCC-ccc
Q 018327 312 VGQWARVENMTILGEDVHVCDEIYSN-GGVV---LPHKEIKSSILKP-EIV 357 (358)
Q Consensus 312 ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v---~~~~~i~~~~~~~-~~~ 357 (358)
||.++.|.+++.||+++.|++++.+. +..+ +++..+.||+|+. .+|
T Consensus 84 Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~~~~~~v~~~~~~~~~~~ 134 (139)
T cd03350 84 IGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDRETGEIYYGRVPPGSVVV 134 (139)
T ss_pred ECCCCEECCCCEECCCCEEcCCCEEcCCeEecccCcccEEecccCCCCEEe
Confidence 99999999889999999999998885 3333 6778999999998 443
No 73
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.67 E-value=2.8e-15 Score=129.58 Aligned_cols=212 Identities=15% Similarity=0.146 Sum_probs=132.9
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEe
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICS 78 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~ 78 (358)
|.+||||||.|+||+. ..||+|+|++|+|||+|+++.+..++ +++++|+++... +.+.+.+.. .. ..+...
T Consensus 4 ~~~iILAaG~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~~~~~~ 76 (227)
T PRK00155 4 VYAIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-PKVTVV 76 (227)
T ss_pred eEEEEEcCccccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-CceEEe
Confidence 3699999999999953 57999999999999999999999875 899999998754 333332221 11 122222
Q ss_pred ccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEE
Q 018327 79 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEK 156 (358)
Q Consensus 79 ~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~ 156 (358)
. ...+..+++..+.+.++ ..+.++++.||. +....++.+++.+.+.+. +.++..-...+ ...+++ |.+.+
T Consensus 77 ~--~~~~~~~sv~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~-~~~~~~~~~~~--~~v~~~-g~~~~ 148 (227)
T PRK00155 77 A--GGAERQDSVLNGLQALP--DDDWVLVHDAARPFLTPDDIDRLIEAAEETGA-AILAVPVKDTI--KRSDDG-GGIVD 148 (227)
T ss_pred C--CcchHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhCCC-EEEEEeccccE--EEEcCC-Cceee
Confidence 2 22356889999988873 234889999998 334458999998766532 22222111112 222433 66655
Q ss_pred EeecCCCCCCCeEEEEEEEEChhhhhhccCC---CCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327 157 FVEKPKLFVGNKINAGIYLLNPAVLDRIELR---PTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYL 231 (358)
Q Consensus 157 ~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~---~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~~l 231 (358)
+.+. ..-...-+.|.|+.+.+..+... ...+..|....+...+ ++..+..+..+.+++|++||..+...+.
T Consensus 149 ~~~r----~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 149 TPDR----SGLWAAQTPQGFRIELLREALARALAEGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred cCCh----HHheeeeCCccchHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 5321 11122234789998888765421 1222233333333333 4666665566889999999988876543
No 74
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.66 E-value=3.3e-15 Score=125.32 Aligned_cols=180 Identities=17% Similarity=0.252 Sum_probs=115.7
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~ 82 (358)
+||||||.|+||++ ||+|+|++|+|||+|+++.+.+.++++++|++++..+++.+.+. ..+++.+.... ..
T Consensus 2 ~iIla~G~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~---~~~~v~~v~~~-~~ 72 (188)
T TIGR03310 2 AIILAAGLSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLA---NHSNITLVHNP-QY 72 (188)
T ss_pred eEEECCCCcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhc---cCCCeEEEECc-Ch
Confidence 79999999999963 89999999999999999999998999999999987655444433 22345443322 22
Q ss_pred cCCCchHHHHHHhhccCCCCCcEEEEeCCee--eccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEeec
Q 018327 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFVEK 160 (358)
Q Consensus 83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~ek 160 (358)
..|...+++.+.+.. ...+.+++++||.. ....++.+++.+......+++. ... ..
T Consensus 73 ~~g~~~si~~~l~~~--~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~-----------~~~---------~~ 130 (188)
T TIGR03310 73 AEGQSSSIKLGLELP--VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP-----------LYK---------GK 130 (188)
T ss_pred hcCHHHHHHHHhcCC--CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe-----------ecC---------Cc
Confidence 358888999888722 22348999999993 3345888888776543322221 111 01
Q ss_pred CCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcC--ceEEEee--cCeEEecCCHHHHHH
Q 018327 161 PKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG--KLFAMVL--PGFWMDIGQPRDYIT 225 (358)
Q Consensus 161 ~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~--~v~~~~~--~~~~~di~t~~dy~~ 225 (358)
+..+ .++++..+..+.....+ .-+..++++. ....... .+.+.|+|||+||.+
T Consensus 131 ~~~P---------l~~~~~~~~~l~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~nint~~d~~~ 187 (188)
T TIGR03310 131 RGHP---------VLFPRKLFPELLALTGD---TGGRQILRELPHEVKYVEVKDPGILFDIDTPEDYQA 187 (188)
T ss_pred cCCC---------EEECHHHHHHHHhCCCC---ccHHHHHHhCcccEEEEEcCCCceeECCCCHHHHhh
Confidence 1112 25788877776532111 1123333322 3333333 357899999999963
No 75
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.66 E-value=5.5e-15 Score=120.12 Aligned_cols=185 Identities=18% Similarity=0.311 Sum_probs=131.4
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEecc
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
-+||||||+|+||+ .||.|+|+.|+|++.++++....++.+++++|+++.. +...... ...++.+.++++
T Consensus 7 ~~VvLAAGrssRmG-----~~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~----~~~~~~~v~npd 77 (199)
T COG2068 7 AAVVLAAGRSSRMG-----QPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALL----AQLGVTVVVNPD 77 (199)
T ss_pred EEEEEcccccccCC-----CcceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhh----ccCCeEEEeCcc
Confidence 48999999999997 5999999999999999999999999999999999862 2222222 233566666666
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEEe
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKFV 158 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~ 158 (358)
+. .|...|+..+.+...... +-++++.||. +...++..+++.+.+++ . .+. ..+.
T Consensus 78 ~~-~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~-~v~-------------------p~~~ 134 (199)
T COG2068 78 YA-QGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRARG-A-AVR-------------------PVYG 134 (199)
T ss_pred hh-hhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhccccC-c-eee-------------------eecc
Confidence 55 499999999999986443 4899999999 45566888888876542 1 111 0111
Q ss_pred ecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCce--EEEee-cCeEEecCCHHHHHHHHHHH
Q 018327 159 EKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKL--FAMVL-PGFWMDIGQPRDYITGLRLY 230 (358)
Q Consensus 159 ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v--~~~~~-~~~~~di~t~~dy~~a~~~~ 230 (358)
.+..++ .+|++..|..+..-..+- =.+.++++... ..... .+.-.|+|||+||.+++..+
T Consensus 135 g~rG~P---------v~~~~~~~~~l~~l~GD~---G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~ 197 (199)
T COG2068 135 GARGHP---------VLLSKDLFPALARLSGDV---GARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLL 197 (199)
T ss_pred CCcCCc---------eeechhHHHHHhhcCCch---hHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhh
Confidence 121222 677888887775444331 15566666553 33334 67899999999999998755
No 76
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.66 E-value=1.3e-15 Score=124.29 Aligned_cols=118 Identities=28% Similarity=0.454 Sum_probs=93.2
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~ 82 (358)
+||||||.|+||+ .||+|+|++|+|||+|+++.+...++++|+|++++ +++.+++.. .++++......
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~----~~~~~v~~~~~- 68 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLER----YGIKVVVDPEP- 68 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTT----TTSEEEE-STS-
T ss_pred CEEECCcCcccCC-----CCccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhc----cCceEEEeccc-
Confidence 7999999999995 39999999999999999999999999999999998 556555543 35666544333
Q ss_pred cCCCchHHHHHHhhccCCCCCcEEEEeCCeee-c-cCHHHHHHHHHhcCCeeEE
Q 018327 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-E-YPFAEMIEFHKAHGGEASI 134 (358)
Q Consensus 83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~-~~l~~~~~~~~~~~~~~~~ 134 (358)
..|.+.+++.+...+. ..++|++++||+.+ + ..++.+++.+.+++.++.+
T Consensus 69 ~~G~~~sl~~a~~~~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~ 120 (160)
T PF12804_consen 69 GQGPLASLLAALSQLP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVV 120 (160)
T ss_dssp SCSHHHHHHHHHHTST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEE
T ss_pred cCChHHHHHHHHHhcc--cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEE
Confidence 4799999999998874 33499999999943 3 4589999988776554433
No 77
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.66 E-value=2.5e-15 Score=121.61 Aligned_cols=109 Identities=21% Similarity=0.312 Sum_probs=96.4
Q ss_pred cccccCCcEEecceEECCCCEECCCcEECC---CcEECCCCEECCCcEE-----eeeEECCCcEECCCcEEeccEEccCC
Q 018327 239 SLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL-----SRCTVMRGVRIKKHACISSSIIGWHS 310 (358)
Q Consensus 239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~ig~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~ 310 (358)
...+.+++.+.+++.|++++.|+++++|.+ ++.||++|.|+++|.| .+++|++++.|++++.+.+++||++|
T Consensus 6 ~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~ 85 (155)
T cd04745 6 SSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNA 85 (155)
T ss_pred CeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCC
Confidence 344677888889999999999999999975 4899999999999999 57999999999999999999999999
Q ss_pred EECCccEEcCccEECCCcEECCceEEc-CcEEccCcee
Q 018327 311 TVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEI 347 (358)
Q Consensus 311 ~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i 347 (358)
.||.++.|.+++.|++++.|++++.+. +..+.+++.+
T Consensus 86 ~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v 123 (155)
T cd04745 86 LVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLI 123 (155)
T ss_pred EECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEE
Confidence 999999999999999999999999986 4455555555
No 78
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.65 E-value=2.3e-15 Score=125.07 Aligned_cols=109 Identities=16% Similarity=0.275 Sum_probs=94.5
Q ss_pred cccccCCcEEecceEECCCCEECCCcEECC---CcEECCCCEECCCcEE-----eeeEECCCcEECCCcEEeccEEccCC
Q 018327 239 SLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL-----SRCTVMRGVRIKKHACISSSIIGWHS 310 (358)
Q Consensus 239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~ig~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~ 310 (358)
...+.+++.+.++++|++++.|+++|+|.+ .++||++|.||++|.| .+|+|+++++|++++.|.+|+|+++|
T Consensus 14 ~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~ 93 (192)
T TIGR02287 14 EAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNA 93 (192)
T ss_pred CcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCC
Confidence 345678888889999999999999999974 5799999999999999 37999999999999999999999999
Q ss_pred EECCccEEcCccEECCCcEECCceEEcCcE-EccCcee
Q 018327 311 TVGQWARVENMTILGEDVHVCDEIYSNGGV-VLPHKEI 347 (358)
Q Consensus 311 ~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~-v~~~~~i 347 (358)
.||.++.+.+++.||+++.|++++.+.... +.++..+
T Consensus 94 ~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~ 131 (192)
T TIGR02287 94 LVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLV 131 (192)
T ss_pred EECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEE
Confidence 999999999999999999999999886443 3344443
No 79
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.65 E-value=1.5e-14 Score=124.69 Aligned_cols=201 Identities=19% Similarity=0.233 Sum_probs=131.2
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEec-
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ- 79 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~- 79 (358)
.+||||+|.|+||. +|+|+|++|+|||+|+++.+.+++ +++|+|+++ .+++.+++.++ +..+.+..
T Consensus 3 ~~iIlA~G~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~~----~~~~~~~~~ 70 (223)
T cd02513 3 LAIIPARGGSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARKY----GAEVPFLRP 70 (223)
T ss_pred EEEEecCCCCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHh----CCCceeeCC
Confidence 58999999999994 499999999999999999999987 788877664 35566555542 33222222
Q ss_pred ---cCCcCCCchHHHHHHhhccCC--CCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEe--cCCCCeeeEEEcCC
Q 018327 80 ---ETEPLGTAGPLALARDKLIDD--TGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV--DEPSKYGVVVMEES 150 (358)
Q Consensus 80 ---~~~~~g~~~sl~~~~~~i~~~--~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~ 150 (358)
.....++.+++..+.+.++.. ..+.++++.||. +....++++++.+...+.++++.+ .....+.....+++
T Consensus 71 ~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (223)
T cd02513 71 AELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDDN 150 (223)
T ss_pred hHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheeeccC
Confidence 123457788999998877431 124899999999 444569999999887666655555 22223332222222
Q ss_pred CC-cEEEEeecCC-----CCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecC-eEEecCCHHHH
Q 018327 151 TG-KVEKFVEKPK-----LFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDY 223 (358)
Q Consensus 151 ~~-~v~~~~ek~~-----~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~-~~~di~t~~dy 223 (358)
+ .+..+.+... .+.....++|+|+++++.+...... + .+++..+..+. ...||+|++||
T Consensus 151 -~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~~--------~-----g~~~~~~~~~~~~~~dI~~~~D~ 216 (223)
T cd02513 151 -GLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNSF--------F-----GGKTGPYEMPRERSIDIDTEEDF 216 (223)
T ss_pred -CceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhcCCc--------c-----CCCeEEEEeCccceeCCCCHHHH
Confidence 2 1222211111 1233357889999999977552110 1 44666666654 68999999999
Q ss_pred HHHHH
Q 018327 224 ITGLR 228 (358)
Q Consensus 224 ~~a~~ 228 (358)
..+..
T Consensus 217 ~~ae~ 221 (223)
T cd02513 217 ELAEA 221 (223)
T ss_pred HHHHH
Confidence 87754
No 80
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.64 E-value=3.5e-15 Score=124.89 Aligned_cols=117 Identities=20% Similarity=0.345 Sum_probs=89.2
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|.+||||||.|+||++ ||+|+|++|+|||+|+++.+...++++++|++++......+++.. .++.+... .
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~----~~~~~~~~-~ 70 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG----LPVVVVIN-P 70 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC----CCeEEEeC-C
Confidence 5689999999999976 899999999999999999999988999999998865555444432 23433222 2
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-e-ccCHHHHHHHHHhc
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-S-EYPFAEMIEFHKAH 128 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~-~~~l~~~~~~~~~~ 128 (358)
....|...++..+++.+.. ..+.+++++||+. . ...++.+++.+...
T Consensus 71 ~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 119 (186)
T cd04182 71 DWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFRED 119 (186)
T ss_pred ChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhC
Confidence 2346889999999988843 2348999999993 3 44578888876543
No 81
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.64 E-value=3.6e-15 Score=118.60 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=100.7
Q ss_pred cccccCCcEEecceEECCCCEECCCcEECC---CcEECCCCEECCCcEEe-----eeEECCCcEECCCcEEeccEEccCC
Q 018327 239 SLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHS 310 (358)
Q Consensus 239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~ig~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~ 310 (358)
..++.+++.+-+++.|++++.|+++++|++ .-.||+++.|.+||+|. .+.||++|+||+++.|.+|.|+++|
T Consensus 17 ~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~ 96 (176)
T COG0663 17 TAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNV 96 (176)
T ss_pred ceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCc
Confidence 356788999999999999999999999994 56899999999999996 3799999999999999999999999
Q ss_pred EECCccEEcCccEECCCcEECCceEEcCcEEccCceeccCC
Q 018327 311 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSI 351 (358)
Q Consensus 311 ~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~ 351 (358)
.||-+++|.+|+.||++|.||+++.+..+...|...+.-..
T Consensus 97 lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~ 137 (176)
T COG0663 97 LIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGS 137 (176)
T ss_pred EEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecC
Confidence 99999999999999999999999999876666665554433
No 82
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.64 E-value=2.7e-15 Score=129.84 Aligned_cols=115 Identities=15% Similarity=0.186 Sum_probs=88.4
Q ss_pred CCcEEecceEECCCCEECCCcEEC-----CCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEcc
Q 018327 244 TGANIVGNVLVHESAQIGEGCLIG-----PDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGW 308 (358)
Q Consensus 244 ~~~~i~~~~~i~~~~~i~~~~~i~-----~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~ 308 (358)
+++.+.+++++++++.|+++++|. .+++|+++|.|+.++.|+ +++||++|+|++++.|.+ ++|++
T Consensus 102 ~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgD 181 (272)
T PRK11830 102 AGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIED 181 (272)
T ss_pred CCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcC
Confidence 444455555555555555555544 466777777777777777 568888888888887764 68999
Q ss_pred CCEECCccEEcCccEECCCcEECCceEEc-CcEEcc---CceeccCCCCCcccC
Q 018327 309 HSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLP---HKEIKSSILKPEIVM 358 (358)
Q Consensus 309 ~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~---~~~i~~~~~~~~~~~ 358 (358)
+|.||.++.|..+++||++++|++++.+. +..+.| +..+.+++|++++|+
T Consensus 182 nv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svvv 235 (272)
T PRK11830 182 NCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVV 235 (272)
T ss_pred CCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEEe
Confidence 99999999999999999999999999995 677774 678888999988763
No 83
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.63 E-value=1.1e-14 Score=119.08 Aligned_cols=97 Identities=23% Similarity=0.341 Sum_probs=88.3
Q ss_pred ccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEE
Q 018327 240 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARV 318 (358)
Q Consensus 240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i 318 (358)
..+.+++.+.+++++++++.|++++.|.++++||++|.|++++.|. +++|+++|.|++++.|.++++++++.|+.++.+
T Consensus 6 ~~~~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i 85 (163)
T cd05636 6 GTVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYV 85 (163)
T ss_pred cccCCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEE
Confidence 3467888999999999999999999999999999999999999998 799999999999999999999999999998888
Q ss_pred cCccEECCCcEECCceEEc
Q 018327 319 ENMTILGEDVHVCDEIYSN 337 (358)
Q Consensus 319 ~~~~~i~~~~~i~~~~~i~ 337 (358)
.+ ++|++++.|++++.+.
T Consensus 86 ~~-siIg~~~~I~~~~~i~ 103 (163)
T cd05636 86 GD-SVLGENVNLGAGTITA 103 (163)
T ss_pred ec-CEECCCCEECCCcEEc
Confidence 76 8888888888887663
No 84
>PLN02296 carbonate dehydratase
Probab=99.62 E-value=7.1e-15 Score=128.00 Aligned_cols=108 Identities=18% Similarity=0.249 Sum_probs=94.5
Q ss_pred ccccCCcEEecceEECCCCEECCCcEECCC---cEECCCCEECCCcEEe-----------eeEECCCcEECCCcEEeccE
Q 018327 240 LKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----------RCTVMRGVRIKKHACISSSI 305 (358)
Q Consensus 240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~-----------~~~i~~~~~i~~~~~i~~~~ 305 (358)
..+.+++.+.+++.||+++.|+++|+|.+. ++||++|.|+++|.|. +++||++|+|+++|+|.+++
T Consensus 59 ~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~ 138 (269)
T PLN02296 59 AFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCT 138 (269)
T ss_pred CEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCE
Confidence 446678888889999999999999999855 4999999999999995 58999999999999999999
Q ss_pred EccCCEECCccEEcCccEECCCcEECCceEEcCc-EEccCcee
Q 018327 306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG-VVLPHKEI 347 (358)
Q Consensus 306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~-~v~~~~~i 347 (358)
|+++|.||.++.|.+++.|+++++|++++.+... .+.++..+
T Consensus 139 Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~ 181 (269)
T PLN02296 139 VEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVW 181 (269)
T ss_pred ECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEE
Confidence 9999999999999999999999999999999644 45555544
No 85
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.62 E-value=1.1e-14 Score=118.57 Aligned_cols=109 Identities=11% Similarity=0.096 Sum_probs=93.5
Q ss_pred ccccCCcEEecceEECCCCEECCCcEEC---CCcEECCCCEECCCcEEee-----------eEECCCcEECCCcEEeccE
Q 018327 240 LKLATGANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLSR-----------CTVMRGVRIKKHACISSSI 305 (358)
Q Consensus 240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~ig~~~~i~~-----------~~i~~~~~i~~~~~i~~~~ 305 (358)
..+.+.+.+.++++||+++.|++++.|. ++++||++|.|+++|.|.+ +.||+++.|..++.+.+++
T Consensus 6 ~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~ 85 (164)
T cd04646 6 AVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALK 85 (164)
T ss_pred cEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeE
Confidence 4467888888999999999999999985 4589999999999999974 4689999999999999999
Q ss_pred EccCCEECCccEEcCccEECCCcEECCceEEcCc-EEccCceec
Q 018327 306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG-VVLPHKEIK 348 (358)
Q Consensus 306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~-~v~~~~~i~ 348 (358)
||++|+||.++.|.+++.||++++||+++++... .+.++..+.
T Consensus 86 IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~ 129 (164)
T cd04646 86 IGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIY 129 (164)
T ss_pred ECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEe
Confidence 9999999999999999999999999999999654 444444443
No 86
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.62 E-value=2.7e-14 Score=130.83 Aligned_cols=199 Identities=15% Similarity=0.129 Sum_probs=131.3
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
.+||||||.|+||.. ..||+|+|++|+|||+|+++.|.+.+ +++++|++++...+..+.+.. .... +.++
T Consensus 7 ~aIILAAG~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~---~~~~-v~~v-- 77 (378)
T PRK09382 7 SLVIVAAGRSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP---EIKF-VTLV-- 77 (378)
T ss_pred eEEEECCCCCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc---cCCe-EEEe--
Confidence 599999999999954 68999999999999999999999988 799999998754433332221 1111 2222
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-e-ccCHHHHHHHHHhcCCeeEEEe---cCCCCeeeEEEcCCCCcEE
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-S-EYPFAEMIEFHKAHGGEASIMV---DEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~-~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~v~ 155 (358)
....+..++++.+++.+. . +.+++..+|.. . ...++.+++.+.+. ++++.. .++..++...+|. ..+.
T Consensus 78 ~gG~~r~~SV~~gL~~l~--~-d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~Dtik~~~~tldR--~~l~ 150 (378)
T PRK09382 78 TGGATRQESVRNALEALD--S-EYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVADTLKRANETVDR--EGLK 150 (378)
T ss_pred CCCchHHHHHHHHHHhcC--C-CeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEeccCcEEeeeEcCc--ccEE
Confidence 233456788999998883 3 38899999973 3 34478888776543 344443 5666666544543 3453
Q ss_pred EEeecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHHH
Q 018327 156 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLY 230 (358)
Q Consensus 156 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~~ 230 (358)
.+ ++|..+.... +....+.... ..|..+.+...+ ++..+.-+..|..++||+|+..++..+
T Consensus 151 ~~-QTPQ~f~~~~------------l~~a~~~~~~-~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l 212 (378)
T PRK09382 151 LI-QTPQLSRTKT------------LKAAADGRGD-FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLL 212 (378)
T ss_pred EE-ECCCCCCHHH------------HHHHHhCCCC-cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHh
Confidence 34 6665432221 2111111112 245556665555 577788888999999999999997654
No 87
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.62 E-value=2.1e-14 Score=129.41 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=12.4
Q ss_pred cEEccCceeccCCCCCccc
Q 018327 339 GVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 339 ~~v~~~~~i~~~~~~~~~~ 357 (358)
+.+++++.|.+|+|+++++
T Consensus 278 ~~ig~~s~V~~~v~~~~~~ 296 (324)
T TIGR01853 278 VTIGAKSGVTKSIPPPGVY 296 (324)
T ss_pred CEEccCCEeCCcCCCCcEE
Confidence 4556666777777776654
No 88
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.61 E-value=1.1e-14 Score=122.66 Aligned_cols=106 Identities=25% Similarity=0.394 Sum_probs=81.1
Q ss_pred cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCcc
Q 018327 243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT 322 (358)
Q Consensus 243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~ 322 (358)
++.+++.++++|++++.|++++.|.+++.||++|.|+++|.|.++.|++++.|++++.|.++++++++.|++++.|.+++
T Consensus 7 ~~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~ 86 (193)
T cd03353 7 PETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGT 86 (193)
T ss_pred CCeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCcc
Confidence 45666777788888888888888877888888888888888887788888888888888888888888888888887777
Q ss_pred EECCCcEECCceEEcCcEEccCceec
Q 018327 323 ILGEDVHVCDEIYSNGGVVLPHKEIK 348 (358)
Q Consensus 323 ~i~~~~~i~~~~~i~~~~v~~~~~i~ 348 (358)
+|+++++|++++.+.++.+.++..+.
T Consensus 87 ~Ig~~~~Ig~~~~i~~s~ig~~~~i~ 112 (193)
T cd03353 87 VLGEGVHIGNFVEIKKSTIGEGSKAN 112 (193)
T ss_pred EECCCCEECCcEEEecceEcCCCEec
Confidence 77777777777776655555554443
No 89
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.61 E-value=9.5e-15 Score=121.75 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=89.6
Q ss_pred ccccCCcEEecceEECCCCEECCCcEECCC---cEECCCCEECCCcEEe-----eeEECCCcEECCCcEEeccEEccCCE
Q 018327 240 LKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHST 311 (358)
Q Consensus 240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~~ 311 (358)
..+.+++.+.+++.||+++.|+++++|+++ ++|+++|.||++|.|. +++|++++.|++++.+.+++|+++|.
T Consensus 17 a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~ 96 (196)
T PRK13627 17 AFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDAL 96 (196)
T ss_pred eEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCE
Confidence 456778888888889999999999988753 5888899999999885 47899999999999999999999999
Q ss_pred ECCccEEcCccEECCCcEECCceEEcCcEE
Q 018327 312 VGQWARVENMTILGEDVHVCDEIYSNGGVV 341 (358)
Q Consensus 312 ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v 341 (358)
||.++.+.+++.||++++|++++.+..+..
T Consensus 97 IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ 126 (196)
T PRK13627 97 VGMNSVIMDGAVIGEESIVAAMSFVKAGFQ 126 (196)
T ss_pred ECcCCccCCCcEECCCCEEcCCCEEeCCcC
Confidence 999999999999999999999999875543
No 90
>PLN02472 uncharacterized protein
Probab=99.61 E-value=1.1e-14 Score=125.04 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=95.9
Q ss_pred ccccCCcEEecceEECCCCEECCCcEECCC---cEECCCCEECCCcEEe-----------eeEECCCcEECCCcEEeccE
Q 018327 240 LKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----------RCTVMRGVRIKKHACISSSI 305 (358)
Q Consensus 240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~-----------~~~i~~~~~i~~~~~i~~~~ 305 (358)
..+.+++.+.+++.|++++.|+.+++|.++ .+||++|.|+++|.|. +++||++|+||++|.|.+++
T Consensus 66 ~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~ 145 (246)
T PLN02472 66 AYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCT 145 (246)
T ss_pred CEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeE
Confidence 456788888899999999999999998854 7899999999999994 58999999999999999999
Q ss_pred EccCCEECCccEEcCccEECCCcEECCceEEc-CcEEccCceec
Q 018327 306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIK 348 (358)
Q Consensus 306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~ 348 (358)
|+++|.||.++.|.++++|+++++|++++.+. +..+.++..+.
T Consensus 146 Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~ 189 (246)
T PLN02472 146 IEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWA 189 (246)
T ss_pred EcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEE
Confidence 99999999999999999999999999999986 55565555544
No 91
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.61 E-value=1.7e-14 Score=120.30 Aligned_cols=107 Identities=27% Similarity=0.385 Sum_probs=82.8
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|.+||||||.|+||++ ||+|+|++|+|||+|+++.+... +++++|++++..+. .. ..++.+... .
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~~----~~----~~~~~~v~~-~ 65 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQER----YA----LLGVPVIPD-E 65 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChHH----Hh----hcCCcEeeC-C
Confidence 6799999999999975 89999999999999999999987 89999999986443 11 123444332 2
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-e-ccCHHHHHHHH
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-S-EYPFAEMIEFH 125 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~-~~~l~~~~~~~ 125 (358)
....|...+++.+++.+ .. +.++++.||.. . ...++.+++.+
T Consensus 66 ~~~~G~~~si~~~l~~~--~~-~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 66 PPGKGPLAGILAALRAA--PA-DWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCCCCHHHHHHHHHhc--CC-CeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 24568899999999887 33 38999999994 3 33477777765
No 92
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.3e-15 Score=139.56 Aligned_cols=102 Identities=21% Similarity=0.362 Sum_probs=96.3
Q ss_pred cceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcE
Q 018327 250 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVH 329 (358)
Q Consensus 250 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ 329 (358)
-+++-++.+.+.+.+.++.+++||.++.||.++.|.||+||.||.||+|++|.+|.||.+|+||.||.|.+ |+|+++++
T Consensus 314 ~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~-aii~d~v~ 392 (673)
T KOG1461|consen 314 RNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDH-AIICDDVK 392 (673)
T ss_pred cccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEee-eEeecCcE
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ECCceEE-cCcEEccCceeccCCC
Q 018327 330 VCDEIYS-NGGVVLPHKEIKSSIL 352 (358)
Q Consensus 330 i~~~~~i-~~~~v~~~~~i~~~~~ 352 (358)
|++++.+ .|++++.+.++.++++
T Consensus 393 i~~~~~l~~g~vl~~~VVv~~~~~ 416 (673)
T KOG1461|consen 393 IGEGAILKPGSVLGFGVVVGRNFV 416 (673)
T ss_pred eCCCcccCCCcEEeeeeEeCCCcc
Confidence 9999999 5888888888888844
No 93
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.60 E-value=3.7e-14 Score=114.30 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=96.3
Q ss_pred cccccCCcEEecceEECCCCEECCCcEECCC---cEECCCCEECCCcEEee-----eEECCCcEECCCcEEeccEEccCC
Q 018327 239 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACISSSIIGWHS 310 (358)
Q Consensus 239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~ 310 (358)
...+.+++.+.+++.||+++.|++++.|.+. ++||++|.|+++|.|.. ++|++++.|++++.+.+++|+++|
T Consensus 6 ~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~ 85 (154)
T cd04650 6 KAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYV 85 (154)
T ss_pred CeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCC
Confidence 4457888889999999999999999999865 69999999999999984 899999999999999999999999
Q ss_pred EECCccEEcCccEECCCcEECCceEEc-CcEEccCcee
Q 018327 311 TVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEI 347 (358)
Q Consensus 311 ~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i 347 (358)
.|+.++.+.++++|++++++++++.+. +..+.++..+
T Consensus 86 ~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~ 123 (154)
T cd04650 86 IVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLV 123 (154)
T ss_pred EEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEE
Confidence 999999999999999999999999886 4455555543
No 94
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.59 E-value=1.6e-14 Score=103.15 Aligned_cols=79 Identities=46% Similarity=0.969 Sum_probs=74.1
Q ss_pred ECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECC
Q 018327 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 332 (358)
Q Consensus 254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 332 (358)
++|++.|+++++|+++++|+++|.||++++|.++++++++.|++++.|.++++++++.|++++.+.+++++|++++|++
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIKD 80 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEECC
Confidence 5788999999999999999999999999999999999999999999999999999999999999999888888888864
No 95
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.59 E-value=4.1e-14 Score=118.84 Aligned_cols=120 Identities=15% Similarity=0.211 Sum_probs=84.9
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhh-hhccCcEEEEec
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF-EAKLGIKIICSQ 79 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~-~~~~~~~i~~~~ 79 (358)
+.+||||||.|+||+. ||.|++++|+|||+|+++.+...++++++|++++..+.+. .+.+. ....++.+....
T Consensus 1 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (190)
T TIGR03202 1 IVAIYLAAGQSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYLLADERIMLVCCR 74 (190)
T ss_pred CeEEEEcCCccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhhhcCCCeEEEECC
Confidence 4689999999999965 7999999999999999998888899999999987643321 11111 112234443333
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-ec-cCHHHHHHHHHh
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SE-YPFAEMIEFHKA 127 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~-~~l~~~~~~~~~ 127 (358)
.. ..|...+++.+++.+.....+.++++.||.. .. ..+..+++.+..
T Consensus 75 ~~-~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~ 123 (190)
T TIGR03202 75 DA-CEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKR 123 (190)
T ss_pred Ch-hhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhh
Confidence 32 3478899999988764323348999999993 33 347777776543
No 96
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.59 E-value=2e-14 Score=126.11 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=50.7
Q ss_pred EECCCcEECCCcEECCCCEECCCcEEe-------------eeEECCCcEECCCcEEec--------cEEccCCEECCccE
Q 018327 259 QIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISS--------SIIGWHSTVGQWAR 317 (358)
Q Consensus 259 ~i~~~~~i~~~~~ig~~~~ig~~~~i~-------------~~~i~~~~~i~~~~~i~~--------~~i~~~~~ig~~~~ 317 (358)
.|+++++|.+++.||++|.|++++.|+ .+.||+++.|++++.|.. +.||+++.|+.++.
T Consensus 40 ~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~ 119 (262)
T PRK05289 40 VIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVH 119 (262)
T ss_pred EECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCE
Confidence 333333333444555555555555553 255666666666666653 23555444444444
Q ss_pred EcCccE------------------ECCCcEECCceE------Ec-CcEEccCceeccCCCCCccc
Q 018327 318 VENMTI------------------LGEDVHVCDEIY------SN-GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 318 i~~~~~------------------i~~~~~i~~~~~------i~-~~~v~~~~~i~~~~~~~~~~ 357 (358)
|..+|+ ||+++.||.++. |+ ++.+.+++.|.+|+|+++++
T Consensus 120 I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~di~~~~~~ 184 (262)
T PRK05289 120 VAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQDVPPYVLA 184 (262)
T ss_pred ECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecceeccCCCCeEE
Confidence 433233 333333333322 22 45667777888999987665
No 97
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.59 E-value=4.9e-14 Score=122.00 Aligned_cols=213 Identities=10% Similarity=0.139 Sum_probs=128.9
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEec
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
.+||||||.|+||+. ..||+|++++|+|||+|+++.+..++ +++++|+++... ..+.+++.++.-. ...+..+.
T Consensus 4 ~~iIlAaG~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~-~~~~~~v~ 79 (230)
T PRK13385 4 ELIFLAAGQGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA-DQRVEVVK 79 (230)
T ss_pred EEEEECCeeccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC-CCceEEcC
Confidence 588999999999964 57999999999999999999998765 899999998642 2233344332100 00122221
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-ec-cCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEE
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SE-YPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKF 157 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 157 (358)
...+..+++..+++.+. .++.++++.||.. .. ..++++++.+.+.+....++. -...+...+ + +.+...
T Consensus 80 --~g~~r~~sv~~gl~~~~--~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~---~~dti~~~~-~-~~~~~~ 150 (230)
T PRK13385 80 --GGTERQESVAAGLDRIG--NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVE---VKDTVKRVK-D-KQVIET 150 (230)
T ss_pred --CCchHHHHHHHHHHhcc--CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEe---ccceEEEEc-C-CeeEec
Confidence 22344589999988873 3336788899993 33 348899888776543333331 111222222 2 444333
Q ss_pred eecCCCCCCCeEEEEEEEEChhhhhhccCC---CCCcccchHHHHHhc-CceEEEeecCeEEecCCHHHHHHHHHHHH
Q 018327 158 VEKPKLFVGNKINAGIYLLNPAVLDRIELR---PTSIEKEVFPKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLYL 231 (358)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~---~~~~~~d~l~~l~~~-~~v~~~~~~~~~~di~t~~dy~~a~~~~l 231 (358)
.++. .-+..-+.+.|+.+.+...... ...+..|-...+... .++..+.-+.....++||+|+..+...+.
T Consensus 151 i~r~----~~~~~qtpq~f~~~~l~~~~~~~~~~~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 151 VDRN----ELWQGQTPQAFELKILQKAHRLASEQQFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred cCHH----HHhhhcCCceeeHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 2211 1122234578887766644221 111223433333333 34666666667889999999999976554
No 98
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=3.4e-13 Score=110.44 Aligned_cols=214 Identities=22% Similarity=0.278 Sum_probs=155.9
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~ 82 (358)
++|+|.=.++||.. |+|-.|+|+|||.++.++..++|.++++|.+.. +++.+.+.++ |..+.....+.
T Consensus 6 viIPAR~~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~~~----G~~avmT~~~h 73 (247)
T COG1212 6 VIIPARLASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVATDD--ERIAEAVQAF----GGEAVMTSKDH 73 (247)
T ss_pred EEEecchhcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHHh----CCEEEecCCCC
Confidence 67788888899866 999999999999999999999999999999886 7788887764 77888888888
Q ss_pred cCCCchHHHHHHhhccCCCCCcEEEEeCCeeecc--CHHHHHHHHHhcCCee-EEEe--c------CCCCeeeEEEcCCC
Q 018327 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY--PFAEMIEFHKAHGGEA-SIMV--D------EPSKYGVVVMEEST 151 (358)
Q Consensus 83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~--~l~~~~~~~~~~~~~~-~~~~--~------~~~~~~~~~~d~~~ 151 (358)
++|+ +.+..+.+.+.-..++-++=+.||..+-. .+..+++....+..++ |++. . +|..- -+..|.+
T Consensus 74 ~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~V-KvV~d~~- 150 (247)
T COG1212 74 QSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVV-KVVLDKE- 150 (247)
T ss_pred CCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcE-EEEEcCC-
Confidence 8888 56666666663333324555689995433 3788888877765554 4443 1 22222 3345665
Q ss_pred CcEEEEeecCCCCC-------CCeEEEEEEEEChhhhhhccC-CCCCccc----chHHHHHhcCceEEEeecCeE-EecC
Q 018327 152 GKVEKFVEKPKLFV-------GNKINAGIYLLNPAVLDRIEL-RPTSIEK----EVFPKIALEGKLFAMVLPGFW-MDIG 218 (358)
Q Consensus 152 ~~v~~~~ek~~~~~-------~~~~~~Giy~~~~~~l~~l~~-~~~~~~~----d~l~~l~~~~~v~~~~~~~~~-~di~ 218 (358)
|+.++|+..|-.+. .-+...|+|.+++++++.+.. .+..++. +.|+.|....++++......- .-+|
T Consensus 151 g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVD 230 (247)
T COG1212 151 GYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVD 230 (247)
T ss_pred CcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCC
Confidence 89999998765222 336789999999999997753 3444432 446666677778888887654 8999
Q ss_pred CHHHHHHHHHHHH
Q 018327 219 QPRDYITGLRLYL 231 (358)
Q Consensus 219 t~~dy~~a~~~~l 231 (358)
|++|+.++.+.+.
T Consensus 231 T~EDLe~v~~~~~ 243 (247)
T COG1212 231 TPEDLERVRKILS 243 (247)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999976554
No 99
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.58 E-value=1.1e-13 Score=126.60 Aligned_cols=96 Identities=26% Similarity=0.433 Sum_probs=48.0
Q ss_pred eEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEe--------------------ccEEccCC
Q 018327 252 VLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS--------------------SSIIGWHS 310 (358)
Q Consensus 252 ~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~--------------------~~~i~~~~ 310 (358)
+.||+++.|+++++|++++.||++|.|++++.|. ++.|+++|.|+++|+|. +++|++++
T Consensus 131 ~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v 210 (343)
T PRK00892 131 VVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDV 210 (343)
T ss_pred ceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCc
Confidence 3333333333344444444444445555555554 34466666666666663 25666666
Q ss_pred EECCccEEcC----ccEECCCcEECCceEEc-CcEEccCcee
Q 018327 311 TVGQWARVEN----MTILGEDVHVCDEIYSN-GGVVLPHKEI 347 (358)
Q Consensus 311 ~ig~~~~i~~----~~~i~~~~~i~~~~~i~-~~~v~~~~~i 347 (358)
.||++++|.. +++||++++|++.+.+. ++.+++++.|
T Consensus 211 ~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i 252 (343)
T PRK00892 211 EIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAI 252 (343)
T ss_pred EECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEE
Confidence 6666666632 24555555555544442 4444444433
No 100
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.58 E-value=3.1e-13 Score=115.82 Aligned_cols=200 Identities=22% Similarity=0.209 Sum_probs=133.7
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEec--
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ-- 79 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~-- 79 (358)
|+|+|+|.|+||. +|.++|++|+|||.|+++.+.+++ +++|+|.++. +++.+..++ ++..+.+..
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a~~----~g~~v~~~r~~ 69 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVAKS----YGASVPFLRPK 69 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHHHH----cCCEeEEeChH
Confidence 7999999999994 499999999999999999999987 6777665543 555555543 355554422
Q ss_pred --cCCcCCCchHHHHHHhhccC-CCCCcEEEEeCCeee--ccCHHHHHHHHHhcCCeeEEEe-c--CCCCeeeEEEcCCC
Q 018327 80 --ETEPLGTAGPLALARDKLID-DTGEPFFVLNSDVIS--EYPFAEMIEFHKAHGGEASIMV-D--EPSKYGVVVMEEST 151 (358)
Q Consensus 80 --~~~~~g~~~sl~~~~~~i~~-~~~~~~lv~~gD~i~--~~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~d~~~ 151 (358)
.....++.+++.++++.++. ...+.++++.+|..+ ..+++.+++.+.+.+.+..+.+ + .+..+.. ..+++
T Consensus 70 ~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~~-~~~~~- 147 (222)
T TIGR03584 70 ELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRAF-KLKEN- 147 (222)
T ss_pred HHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHhe-EECCC-
Confidence 23356888999999988742 123479999999943 4569999999887656666655 2 1122222 33443
Q ss_pred CcEEEEeecC----C-C-CCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeecC-eEEecCCHHHHH
Q 018327 152 GKVEKFVEKP----K-L-FVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYI 224 (358)
Q Consensus 152 ~~v~~~~ek~----~-~-~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~~-~~~di~t~~dy~ 224 (358)
|++..+.... + + +.....+.++|+++++.+..- .. + + .++...+.++. ...|||+++||.
T Consensus 148 g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~--~~------~----~-~~~~~~~~m~~~~~iDID~~~D~~ 214 (222)
T TIGR03584 148 GGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLES--GP------I----F-SPHSIPIVLPRHLVQDIDTLEDWE 214 (222)
T ss_pred CcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhc--CC------c----c-CCCcEEEEeCccceeCCCCHHHHH
Confidence 6655444211 1 1 112246889999999877541 00 0 1 34566777664 689999999999
Q ss_pred HHHHH
Q 018327 225 TGLRL 229 (358)
Q Consensus 225 ~a~~~ 229 (358)
.+...
T Consensus 215 ~ae~l 219 (222)
T TIGR03584 215 RAELL 219 (222)
T ss_pred HHHHH
Confidence 88653
No 101
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.58 E-value=1.1e-13 Score=117.18 Aligned_cols=126 Identities=17% Similarity=0.216 Sum_probs=91.6
Q ss_pred CeEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEEC
Q 018327 212 GFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM 290 (358)
Q Consensus 212 ~~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~ 290 (358)
.++..+..+....+....+.. ........+.+.+.+.+++.|++++.|+++++|++++.||++|.|+.++.|. ++.|+
T Consensus 61 ~~iiai~~~~~~~~i~~~l~~-~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig 139 (201)
T TIGR03570 61 DLVVAIGDNKLRRRLFEKLKA-KGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIG 139 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHh-CCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEEC
Confidence 455566555555544443322 2223334456777788888888888888888888888888888888888887 68888
Q ss_pred CCcEECCCcEEec-cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327 291 RGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 338 (358)
Q Consensus 291 ~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 338 (358)
+++.|+.++.+.+ +.++++|.||.++.+.+++.|+++++|++++++.+
T Consensus 140 ~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~ 188 (201)
T TIGR03570 140 DYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTK 188 (201)
T ss_pred CCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECC
Confidence 8888888888885 78888888888888887788888888887777754
No 102
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.58 E-value=5.2e-14 Score=118.41 Aligned_cols=116 Identities=17% Similarity=0.397 Sum_probs=68.1
Q ss_pred ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEccCCEE--------
Q 018327 242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTV-------- 312 (358)
Q Consensus 242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~i-------- 312 (358)
+.+++.+.+++.|++++.|++++.|. ++.|+++|.|++++.|.+++|++++.|++++.|.. +.|++++.|
T Consensus 24 I~~~a~i~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~ 102 (193)
T cd03353 24 IDPGVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKK 102 (193)
T ss_pred ECCCCEEeCcCEECCCCEECCCcEEe-CCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEec
Confidence 44555555666666666666666664 44666777776666666666666666666655542 444444333
Q ss_pred --------------------------CCccEEc-------CccEECCCcEECCc------eEEc-CcEEccCceeccCCC
Q 018327 313 --------------------------GQWARVE-------NMTILGEDVHVCDE------IYSN-GGVVLPHKEIKSSIL 352 (358)
Q Consensus 313 --------------------------g~~~~i~-------~~~~i~~~~~i~~~------~~i~-~~~v~~~~~i~~~~~ 352 (358)
|+++.+. .+++||+++.||.+ +.++ ++.+.+++.|.+++|
T Consensus 103 s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~ 182 (193)
T cd03353 103 STIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVP 182 (193)
T ss_pred ceEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccC
Confidence 3322221 02334444444444 4553 677889999999999
Q ss_pred CCcccC
Q 018327 353 KPEIVM 358 (358)
Q Consensus 353 ~~~~~~ 358 (358)
++++++
T Consensus 183 ~~~~v~ 188 (193)
T cd03353 183 PGALAI 188 (193)
T ss_pred CCCEEE
Confidence 998763
No 103
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.57 E-value=7.3e-14 Score=117.60 Aligned_cols=110 Identities=25% Similarity=0.316 Sum_probs=80.4
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|.+||||||.|+||+. .||+|+|++|+|||+|+++.+. .++++++|+++...+.. .. .++.+.....
T Consensus 4 ~~~vILA~G~s~Rm~~----~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~----~~~~~v~~~~ 70 (193)
T PRK00317 4 ITGVILAGGRSRRMGG----VDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLARY----AA----FGLPVIPDSL 70 (193)
T ss_pred ceEEEEcCCCcccCCC----CCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHHH----Hh----cCCcEEeCCC
Confidence 5799999999999953 6899999999999999999998 67999999988643322 11 2334322222
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHH
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHK 126 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~-~~l~~~~~~~~ 126 (358)
....|...++..+++.. .. +.++++.||. +.. ..++.+++.+.
T Consensus 71 ~~~~g~~~~i~~~l~~~--~~-~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 71 ADFPGPLAGILAGLKQA--RT-EWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred CCCCCCHHHHHHHHHhc--CC-CeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 22367888999888765 33 3899999999 333 34777777654
No 104
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.57 E-value=5.1e-14 Score=122.47 Aligned_cols=20 Identities=5% Similarity=-0.022 Sum_probs=15.6
Q ss_pred CcEEccCceeccCCCCCccc
Q 018327 338 GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 338 ~~~v~~~~~i~~~~~~~~~~ 357 (358)
++.+.+++.|.+|+|+.+++
T Consensus 161 ~a~Vg~gs~V~~dVpp~~i~ 180 (255)
T PRK12461 161 LAMMAGGSRISKDVPPYCMM 180 (255)
T ss_pred CcEECCCceEeccCCCCeEE
Confidence 34567788899999998765
No 105
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.57 E-value=1.6e-13 Score=115.75 Aligned_cols=100 Identities=18% Similarity=0.292 Sum_probs=70.4
Q ss_pred cccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEccCCEECCcc
Q 018327 239 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWA 316 (358)
Q Consensus 239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~ 316 (358)
...+.+.+.+.+++.+++++.|+++++|++++.||++|.|+.++.|. ++.|+++|.|+.++.+.+ +.|+++|+||.++
T Consensus 84 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~ 163 (197)
T cd03360 84 ATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGA 163 (197)
T ss_pred ceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCC
Confidence 33445666667777777777777777777777777777777777776 677777777777777765 6777777777777
Q ss_pred EEcCccEECCCcEECCceEEcC
Q 018327 317 RVENMTILGEDVHVCDEIYSNG 338 (358)
Q Consensus 317 ~i~~~~~i~~~~~i~~~~~i~~ 338 (358)
.+.+++.||++++|++++++..
T Consensus 164 ~v~~~~~ig~~~~v~~~~~v~~ 185 (197)
T cd03360 164 TIIQGVTIGAGAIIGAGAVVTK 185 (197)
T ss_pred EEcCCCEECCCCEECCCCEEcC
Confidence 7777677777776666655543
No 106
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.57 E-value=5.2e-14 Score=123.32 Aligned_cols=116 Identities=14% Similarity=0.206 Sum_probs=75.9
Q ss_pred ccCCcEEecceEECCCCEECCCcEECC------------CcEECCCCEECCCcEEe--------eeEECCCcEECCCcEE
Q 018327 242 LATGANIVGNVLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLS--------RCTVMRGVRIKKHACI 301 (358)
Q Consensus 242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~------------~~~ig~~~~ig~~~~i~--------~~~i~~~~~i~~~~~i 301 (358)
+.+.+.+.+++.||+++.|+++++|+. ++.||++|.|+++|.|. ++.||+++.|++++.|
T Consensus 37 I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I 116 (254)
T TIGR01852 37 LKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHI 116 (254)
T ss_pred ECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEE
Confidence 445555555666666666666666652 46666666666666664 3466666666666666
Q ss_pred e-ccEEccCCEECCccEEcCccEECCCcEECCceEEc-------CcEEccCceeccCCCCCccc
Q 018327 302 S-SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 302 ~-~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~~~~~~~~~ 357 (358)
. ++.|++++.|+.++.+..+++||+++.|++++.+. ++.+.+++.|.+++|+++++
T Consensus 117 ~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~~ 180 (254)
T TIGR01852 117 AHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGLV 180 (254)
T ss_pred ccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeEeeecCCCcEE
Confidence 3 36777777777777777777777777777776653 34566777778888887665
No 107
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.56 E-value=3.6e-14 Score=101.56 Aligned_cols=79 Identities=24% Similarity=0.508 Sum_probs=72.8
Q ss_pred ECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCc
Q 018327 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDE 333 (358)
Q Consensus 254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~ 333 (358)
|++++.|++++.|. ++.|+++|.|+++++|.+++|++++.|+++|.|.++++++++.|++++.+.+ |++|++++|+++
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~-~ii~~~~~i~~~ 79 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKD-CLVGSGYRVEAG 79 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEcc-CEECCCcEeCCC
Confidence 67888899999886 7999999999999999999999999999999999999999999999999987 999999999887
Q ss_pred e
Q 018327 334 I 334 (358)
Q Consensus 334 ~ 334 (358)
+
T Consensus 80 ~ 80 (81)
T cd04652 80 T 80 (81)
T ss_pred C
Confidence 5
No 108
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.56 E-value=3.5e-14 Score=101.22 Aligned_cols=79 Identities=35% Similarity=0.574 Sum_probs=72.1
Q ss_pred EECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECC
Q 018327 253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 332 (358)
Q Consensus 253 ~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 332 (358)
+|++++.|++++.+. +++||++|+|++++.|.+++|++++.|++++.|.++++++++.|+.++.+.++++++++++|++
T Consensus 1 ~ig~~~~I~~~~~i~-~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 1 LIGESTVIGENAIIK-NSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79 (79)
T ss_pred CccCCcEECCCCEEe-CCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence 478889999999997 5999999999999999999999999999999999999999999999999988888888888764
No 109
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.56 E-value=5.2e-14 Score=122.84 Aligned_cols=102 Identities=26% Similarity=0.395 Sum_probs=48.1
Q ss_pred cEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec--------------------c
Q 018327 246 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS--------------------S 304 (358)
Q Consensus 246 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~--------------------~ 304 (358)
+.|.+++.||+++.|+++++|++++.||++|.|.+|+.|. ++.||++|.|+++++|.. +
T Consensus 124 ~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V 203 (338)
T COG1044 124 VVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRV 203 (338)
T ss_pred eEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceE
Confidence 3333333333333333444444444444444444444444 355555555555555532 2
Q ss_pred EEccCCEECCccEEcCc----cEECCCcEECCceEEc-CcEEccCcee
Q 018327 305 IIGWHSTVGQWARVENM----TILGEDVHVCDEIYSN-GGVVLPHKEI 347 (358)
Q Consensus 305 ~i~~~~~ig~~~~i~~~----~~i~~~~~i~~~~~i~-~~~v~~~~~i 347 (358)
+|+++|.||.|++|..+ ++|+++++|.+.+.|. ++.++.++.|
T Consensus 204 ~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I 251 (338)
T COG1044 204 IIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCII 251 (338)
T ss_pred EECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEE
Confidence 35666666666666654 5555555554444443 3444444333
No 110
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.56 E-value=7.9e-14 Score=121.71 Aligned_cols=102 Identities=23% Similarity=0.350 Sum_probs=49.9
Q ss_pred cceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEccCCEECCccEEc-------C
Q 018327 250 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVE-------N 320 (358)
Q Consensus 250 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~-------~ 320 (358)
++++|++++.||++++|.++++||++|.||+++.|. |++|.+++.||.+|.|.. +.||.+.....++.++ +
T Consensus 122 ~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g 201 (338)
T COG1044 122 PNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIG 201 (338)
T ss_pred CCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceec
Confidence 333333334444444444444444444444444444 444444444444444443 3444443333221111 3
Q ss_pred ccEECCCcEECCceEEc-C----cEEccCceeccCC
Q 018327 321 MTILGEDVHVCDEIYSN-G----GVVLPHKEIKSSI 351 (358)
Q Consensus 321 ~~~i~~~~~i~~~~~i~-~----~~v~~~~~i~~~~ 351 (358)
.++|++++.||+++.|. + .++..++.|+...
T Consensus 202 ~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~v 237 (338)
T COG1044 202 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLV 237 (338)
T ss_pred eEEECCceEEcccceeccccccCceecCCcEEccee
Confidence 57888888888888885 4 5666666666553
No 111
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.55 E-value=1.5e-13 Score=112.60 Aligned_cols=108 Identities=19% Similarity=0.338 Sum_probs=93.2
Q ss_pred ccccCCcEEecceEECCCCEECCCcEECC----CcEECCCCEECCCcEEe-----eeEECCCcEECCCcEEec-cEEccC
Q 018327 240 LKLATGANIVGNVLVHESAQIGEGCLIGP----DVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISS-SIIGWH 309 (358)
Q Consensus 240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~ig~~~~i~-----~~~i~~~~~i~~~~~i~~-~~i~~~ 309 (358)
..+.+++.+.+++.+++++.|+++++|.. ++.||++|.|++++.|. ++.|++++.|++++.|.+ +.||++
T Consensus 9 ~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~ 88 (167)
T cd00710 9 AYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN 88 (167)
T ss_pred eEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC
Confidence 34567777888888888888888888865 47899999999999994 688999999999999998 899999
Q ss_pred CEECCccEEcCccEECCCcEECCceEEcCcEEccCceec
Q 018327 310 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK 348 (358)
Q Consensus 310 ~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 348 (358)
|.||.++.|.+ +.||+++.||+++.+.+..+.++..+.
T Consensus 89 ~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~~~~i~~~~~v~ 126 (167)
T cd00710 89 CFIGFRSVVFN-AKVGDNCVIGHNAVVDGVEIPPGRYVP 126 (167)
T ss_pred CEECCCCEEEC-CEECCCCEEcCCCEEeCCEeCCCCEEC
Confidence 99999999986 999999999999999876777777664
No 112
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.55 E-value=9.1e-14 Score=121.81 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=57.5
Q ss_pred ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-------------eeEECCCcEECCCcEEec-----
Q 018327 242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISS----- 303 (358)
Q Consensus 242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-------------~~~i~~~~~i~~~~~i~~----- 303 (358)
+.+.+.+.++++|++++.|+++++|.+++.||++|.|++++.|. +++||++|.|+++|+|..
T Consensus 20 I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~ 99 (254)
T cd03351 20 IGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQG 99 (254)
T ss_pred ECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCC
Confidence 34444444555555555555555555566666666666666664 467777788877777763
Q ss_pred ---cEEccCCEECCccEEcCccEECCCcEECCceEE
Q 018327 304 ---SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS 336 (358)
Q Consensus 304 ---~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 336 (358)
+.||++|.|++++.|..+++||+++.|++++.+
T Consensus 100 ~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i 135 (254)
T cd03351 100 GGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATL 135 (254)
T ss_pred CCceEECCCCEECCCCEECCCCEECCCcEECCCccc
Confidence 566777777666666555555555555444433
No 113
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.54 E-value=9.8e-14 Score=121.59 Aligned_cols=117 Identities=11% Similarity=0.086 Sum_probs=84.8
Q ss_pred cccCCcEEecceEECCCCEECCCcEECC------------CcEECCCCEECCCcEEe--------eeEECCCcEECCCcE
Q 018327 241 KLATGANIVGNVLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLS--------RCTVMRGVRIKKHAC 300 (358)
Q Consensus 241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~------------~~~ig~~~~ig~~~~i~--------~~~i~~~~~i~~~~~ 300 (358)
.+.+.+.|.+++.||+++.|+++++|++ ++.||++|.|+++|.|. .+.||++|.|++++.
T Consensus 37 ~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~ 116 (254)
T cd03351 37 VIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVH 116 (254)
T ss_pred EECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCE
Confidence 3456666667777777777777777764 67788888888888886 377888888888888
Q ss_pred Ee-ccEEccCCEECCccEEcCccEECCCcEECCceEEc-------CcEEccCceeccCCCCCccc
Q 018327 301 IS-SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-------GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 301 i~-~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~~~~~~~~~ 357 (358)
|. ++.||++|.|+.++.+..+++||+++.|++++.+. ++.+.+++.|.+++++++++
T Consensus 117 I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~~ 181 (254)
T cd03351 117 VAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYVIA 181 (254)
T ss_pred ECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeeecCCCeEE
Confidence 84 47888888888877777777777777777766653 34556666777788776554
No 114
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.54 E-value=1.6e-13 Score=110.87 Aligned_cols=109 Identities=20% Similarity=0.307 Sum_probs=94.7
Q ss_pred cccccCCcEEecceEECCCCEECCCcEECCC---cEECCCCEECCCcEEee-----eEECCCcEECCCcEEeccEEccCC
Q 018327 239 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACISSSIIGWHS 310 (358)
Q Consensus 239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~ 310 (358)
...+.+++.+.+++.+++++.|++++.|.++ ++||++|.|+++|+|.. ++|++++.|+.+|.+.+++|++++
T Consensus 5 ~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~ 84 (153)
T cd04645 5 SAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNC 84 (153)
T ss_pred CeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCC
Confidence 3456788899999999999999999998754 69999999999999986 599999999999999999999999
Q ss_pred EECCccEEcCccEECCCcEECCceEEcCc-EEccCcee
Q 018327 311 TVGQWARVENMTILGEDVHVCDEIYSNGG-VVLPHKEI 347 (358)
Q Consensus 311 ~ig~~~~i~~~~~i~~~~~i~~~~~i~~~-~v~~~~~i 347 (358)
.|+.++.+..++++++++.|++++.+... .+.+++.+
T Consensus 85 ~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~ 122 (153)
T cd04645 85 LIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLV 122 (153)
T ss_pred EECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEE
Confidence 99999999988999999999999888643 44444444
No 115
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.54 E-value=1.8e-13 Score=114.53 Aligned_cols=113 Identities=21% Similarity=0.325 Sum_probs=82.8
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|.+||||||.|+||+. .||+|+|++|+|||+|+++.+.. .+++++|+++..... +... ..++.+.....
T Consensus 1 ~~~iILAgG~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~---~~~~~~i~~~~ 69 (186)
T TIGR02665 1 ISGVILAGGRARRMGG----RDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPER---YAQA---GFGLPVVPDAL 69 (186)
T ss_pred CeEEEEcCCccccCCC----CCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc---cCCCcEEecCC
Confidence 5789999999999964 59999999999999999999976 589999888764322 2111 12344433322
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eecc-CHHHHHHHHHh
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFHKA 127 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~~-~l~~~~~~~~~ 127 (358)
....|+..+++.+++.+ .. +.++++.||. +... .++.+++.+.+
T Consensus 70 ~~~~g~~~si~~al~~~--~~-~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 70 ADFPGPLAGILAGLRWA--GT-DWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred CCCCCCHHHHHHHHHhc--CC-CeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 44579999999999887 33 3899999999 3343 37777776543
No 116
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.53 E-value=1.1e-13 Score=116.35 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=77.8
Q ss_pred cccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEecc-EEccCC-------
Q 018327 239 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS-IIGWHS------- 310 (358)
Q Consensus 239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~-~i~~~~------- 310 (358)
...+++++.+. ++.||+++.|++++.|. +++||++|.|+.++.+.++.||++|.|++++.|... ...++.
T Consensus 8 ~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~ 85 (204)
T TIGR03308 8 EPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTY 85 (204)
T ss_pred CCeECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccc
Confidence 34567777785 47888889999988885 899999999999999988999999999999888642 100000
Q ss_pred ------------------EECCccEEcCccEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327 311 ------------------TVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 311 ------------------~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~ 357 (358)
....++.|++++.||.+++|.+++.++ ++.+.+++.|.+++|+++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~ 151 (204)
T TIGR03308 86 RAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIV 151 (204)
T ss_pred ccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEE
Confidence 012334444444444444444444443 45555666677777776654
No 117
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.53 E-value=2.3e-13 Score=107.99 Aligned_cols=104 Identities=20% Similarity=0.208 Sum_probs=65.0
Q ss_pred EEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEc--------cCCEECCcc
Q 018327 247 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIG--------WHSTVGQWA 316 (358)
Q Consensus 247 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~--------~~~~ig~~~ 316 (358)
.|++.+++++++.|++++.|.+.++++.++.||+++.|. ++.|++++.|+++|.|.. +.++ .++.|++++
T Consensus 3 ~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~ 82 (139)
T cd03350 3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDV 82 (139)
T ss_pred ccCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCC
Confidence 455666666666666666666666666666666666666 566666666666666655 5555 235666666
Q ss_pred EEcCccEECCCcEECCceEEc-CcEEccCceeccC
Q 018327 317 RVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSS 350 (358)
Q Consensus 317 ~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~ 350 (358)
.|..+++|..+++|++++.+. ++.+.++..|...
T Consensus 83 ~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~ 117 (139)
T cd03350 83 FIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR 117 (139)
T ss_pred EECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc
Confidence 666666666666666666664 5555555555554
No 118
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.52 E-value=1.2e-13 Score=98.55 Aligned_cols=79 Identities=20% Similarity=0.369 Sum_probs=70.4
Q ss_pred EECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECC
Q 018327 253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 332 (358)
Q Consensus 253 ~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 332 (358)
+|++++.|++++.|. ++.|+++|.|+++++|.+++|++++.|++++.|.++++++++.|++++.+..+++++++++||+
T Consensus 1 ~ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 1 VIGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD 79 (79)
T ss_pred CccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence 368888899998886 7999999999999999999999999999999999999999999999988888888888887764
No 119
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=5e-14 Score=123.63 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=85.7
Q ss_pred cEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEcc
Q 018327 264 CLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP 343 (358)
Q Consensus 264 ~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~ 343 (358)
+.++..++++++|.|++++.|..|+||++|.||+.++|.+|++++++.||+++.|.+ |+||.+++||+++.+.+|.++|
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~Ien-sIIg~gA~Ig~gs~L~nC~Ig~ 407 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIEN-SIIGMGAQIGSGSKLKNCIIGP 407 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceec-ceecccceecCCCeeeeeEecC
Confidence 455567899999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred Cceec-cCCCCCccc
Q 018327 344 HKEIK-SSILKPEIV 357 (358)
Q Consensus 344 ~~~i~-~~~~~~~~~ 357 (358)
+..|+ +..-.++++
T Consensus 408 ~yvVeak~~~~~ev~ 422 (433)
T KOG1462|consen 408 GYVVEAKGKHGGEVL 422 (433)
T ss_pred CcEEcccccccccEe
Confidence 99999 555555543
No 120
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.50 E-value=8.2e-13 Score=111.33 Aligned_cols=111 Identities=17% Similarity=0.231 Sum_probs=84.5
Q ss_pred ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEccCCEECCccEEc
Q 018327 242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVE 319 (358)
Q Consensus 242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~ 319 (358)
+.....+++.+.+++++.++.++.|.++++|+++++||++|.|. +++|++++.|+++|.|.. +.+..++.||+++.|+
T Consensus 81 ~~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig 160 (197)
T cd03360 81 YRFATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIG 160 (197)
T ss_pred CccceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEEC
Confidence 45567778888888888888888888888888888888888886 788888888888777754 6666677777666666
Q ss_pred CccEECCCcEECCceEEcCcEEccCceeccCCCCCccc
Q 018327 320 NMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 320 ~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~~~~ 357 (358)
.++.+..+++||+++. +.+++.|.+++|+++++
T Consensus 161 ~~~~v~~~~~ig~~~~-----v~~~~~v~~~~~~~~~~ 193 (197)
T cd03360 161 AGATIIQGVTIGAGAI-----IGAGAVVTKDVPDGSVV 193 (197)
T ss_pred CCCEEcCCCEECCCCE-----ECCCCEEcCCCCCCCEE
Confidence 6666666666665554 55678888899988775
No 121
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.50 E-value=5e-13 Score=117.12 Aligned_cols=95 Identities=12% Similarity=0.207 Sum_probs=60.0
Q ss_pred ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-------------eeEECCCcEECCCcEEec-----
Q 018327 242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISS----- 303 (358)
Q Consensus 242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-------------~~~i~~~~~i~~~~~i~~----- 303 (358)
+.+.+.+.+++.|++++.|++++.|.+++.||++|.|++++.|. +++||++|.|+++|+|..
T Consensus 19 I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~ 98 (254)
T TIGR01852 19 IGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASG 98 (254)
T ss_pred ECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCC
Confidence 34455555555555555555555565667777777777777775 477888888888888863
Q ss_pred ---cEEccCCEECCccEEcCccEECCCcEECCceEE
Q 018327 304 ---SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS 336 (358)
Q Consensus 304 ---~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 336 (358)
++||+++.|+.++.|..+|+||+++.|++++.+
T Consensus 99 ~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i 134 (254)
T TIGR01852 99 GGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATL 134 (254)
T ss_pred CCcEEECCCCEECCCCEEccCCEECCCCEECCCCEE
Confidence 366666666666655555555555555555444
No 122
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.50 E-value=2.8e-12 Score=111.49 Aligned_cols=207 Identities=14% Similarity=0.188 Sum_probs=118.1
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHC-CCCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEec
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~-gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
.+||||||.|+||+. ..||+|++++|+|+|+|+++.+... ++++++|++++.. +.++..+.+ ++..+.++
T Consensus 26 ~aIILAAG~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~----~~~~i~~v- 97 (252)
T PLN02728 26 SVILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN----IDVPLKFA- 97 (252)
T ss_pred EEEEEcccccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh----cCCceEEc-
Confidence 589999999999964 5899999999999999999999885 7999999999753 333333333 23334333
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCC--e--eeccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEE
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--V--ISEYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVE 155 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD--~--i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~ 155 (358)
....+..++++.+++.+.. + ..+++.+| . +....+..+++...+.+.. +.. -|....+...+++ +.+.
T Consensus 98 -~gg~~r~~SV~~gl~~l~~--~-~~~VlihDaarP~vs~~~i~~li~~~~~~ga~--i~~-~~~~dtik~v~~~-~~v~ 169 (252)
T PLN02728 98 -LPGKERQDSVFNGLQEVDA--N-SELVCIHDSARPLVTSADIEKVLKDAAVHGAA--VLG-VPVKATIKEANSD-SFVV 169 (252)
T ss_pred -CCCCchHHHHHHHHHhccC--C-CCEEEEecCcCCCCCHHHHHHHHHHHhhCCeE--EEe-ecchhhEEEecCC-Ccee
Confidence 2334567889999988742 2 33445555 4 3333478888877665432 222 0222223333332 4332
Q ss_pred EEeecCCCCCCCeEEE-EEEEEChhhhhhcc----CCCCCcccchHHHHHhcC-ceEEEeecCeEEecCCHHHHHHHHHH
Q 018327 156 KFVEKPKLFVGNKINA-GIYLLNPAVLDRIE----LRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRL 229 (358)
Q Consensus 156 ~~~ek~~~~~~~~~~~-Giy~~~~~~l~~l~----~~~~~~~~d~l~~l~~~~-~v~~~~~~~~~~di~t~~dy~~a~~~ 229 (358)
...+ ++.+..+ ---.|+.+.+.... .+.. ...|-...+...| ++....-+..-.-|.||+|+..+...
T Consensus 170 ~t~~-----R~~l~~~QTPQ~F~~~~l~~a~~~~~~~~~-~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~ 243 (252)
T PLN02728 170 KTLD-----RKRLWEMQTPQVIKPELLRRGFELVEREGL-EVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERI 243 (252)
T ss_pred eccC-----hHHeEEEeCCccchHHHHHHHHHHHHhcCC-CcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHH
Confidence 2211 1111111 01234444333221 1111 1233333333333 45554444566778999999888764
Q ss_pred H
Q 018327 230 Y 230 (358)
Q Consensus 230 ~ 230 (358)
+
T Consensus 244 l 244 (252)
T PLN02728 244 L 244 (252)
T ss_pred H
Confidence 4
No 123
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.49 E-value=2.6e-13 Score=129.58 Aligned_cols=116 Identities=17% Similarity=0.399 Sum_probs=68.9
Q ss_pred cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEccCCEECCcc---
Q 018327 241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWA--- 316 (358)
Q Consensus 241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~--- 316 (358)
.+.+++.|.+++.||+++.|++++.|. ++.||++|.|+++|.|.+++|+++|.|+++++|.+ ++|+++|.||.++
T Consensus 269 ~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~ 347 (451)
T TIGR01173 269 EIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETK 347 (451)
T ss_pred EEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeec
Confidence 455666666667777777777766664 56666666666666665555555555555555542 4444333333222
Q ss_pred -------------------------EEcC-------------ccEECCCcEECCc------eEEc-CcEEccCceeccCC
Q 018327 317 -------------------------RVEN-------------MTILGEDVHVCDE------IYSN-GGVVLPHKEIKSSI 351 (358)
Q Consensus 317 -------------------------~i~~-------------~~~i~~~~~i~~~------~~i~-~~~v~~~~~i~~~~ 351 (358)
.|+. +++||+++.||.+ +.|+ ++.+.+++.|.+++
T Consensus 348 ~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v 427 (451)
T TIGR01173 348 NARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDV 427 (451)
T ss_pred CcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEECccC
Confidence 1111 1334444444444 3453 67788999999999
Q ss_pred CCCccc
Q 018327 352 LKPEIV 357 (358)
Q Consensus 352 ~~~~~~ 357 (358)
|+++++
T Consensus 428 ~~~~~~ 433 (451)
T TIGR01173 428 PEGALA 433 (451)
T ss_pred CCCcEE
Confidence 998876
No 124
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.49 E-value=9.3e-13 Score=111.27 Aligned_cols=110 Identities=21% Similarity=0.269 Sum_probs=79.3
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
+.+||||||.|+||+. ||+|+|++|+|||+|+++.+... +++++|++++. +....... .++.+... .
T Consensus 8 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~~~~~-----~~~~~i~~-~ 74 (200)
T PRK02726 8 LVALILAGGKSSRMGQ-----DKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWP-ERYQSLLP-----PGCHWLRE-P 74 (200)
T ss_pred ceEEEEcCCCcccCCC-----CceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCH-HHHHhhcc-----CCCeEecC-C
Confidence 4689999999999954 89999999999999999999764 78998887642 22222111 13333222 2
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee--ccCHHHHHHHHH
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS--EYPFAEMIEFHK 126 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~--~~~l~~~~~~~~ 126 (358)
....|...++..+++.++ . +.++++.||..+ ...++.+++.+.
T Consensus 75 ~~~~G~~~si~~~l~~~~--~-~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 75 PPSQGPLVAFAQGLPQIK--T-EWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred CCCCChHHHHHHHHHhCC--C-CcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 223688899999998883 3 489999999943 334777777654
No 125
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.48 E-value=8.2e-13 Score=111.19 Aligned_cols=96 Identities=13% Similarity=0.143 Sum_probs=66.9
Q ss_pred ECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEc--------------
Q 018327 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE-------------- 319 (358)
Q Consensus 254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~-------------- 319 (358)
+++++.|++++.|. ++.||++|.|+++|+|.+++||+++.|+++|.+.++.||++|.|+++++|.
T Consensus 5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~ 83 (204)
T TIGR03308 5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHF 83 (204)
T ss_pred cCCCCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccc
Confidence 45666666666674 577777777777777777777777777777777777777777777777664
Q ss_pred -----------------------CccEECCCcEECCceEEc-CcEEccCceeccC
Q 018327 320 -----------------------NMTILGEDVHVCDEIYSN-GGVVLPHKEIKSS 350 (358)
Q Consensus 320 -----------------------~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~ 350 (358)
.+++||+++.||.++.+. +..+++++.|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~g 138 (204)
T TIGR03308 84 TYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAG 138 (204)
T ss_pred ccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 246666666666666664 6666666666543
No 126
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.48 E-value=5.9e-13 Score=107.72 Aligned_cols=103 Identities=16% Similarity=0.255 Sum_probs=69.8
Q ss_pred ECCCCEECCCcEECCCcEECCCCEECCCcEEee----eEECCCcEECCCcEE-----eccEEccCCEECCccEEcCccEE
Q 018327 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR----CTVMRGVRIKKHACI-----SSSIIGWHSTVGQWARVENMTIL 324 (358)
Q Consensus 254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~----~~i~~~~~i~~~~~i-----~~~~i~~~~~ig~~~~i~~~~~i 324 (358)
+++++.|+++++|.+++.||++|.|+++|.|.. +.|+++|.|+++|+| .+++|++++.|+.++.+.+ ++|
T Consensus 3 i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~-~~I 81 (155)
T cd04745 3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG-CTI 81 (155)
T ss_pred cCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEEC-CEE
Confidence 355556666666666677777777777777763 788888888888888 4578888888888777655 666
Q ss_pred CCCcEECCceEEc-------CcEEccCceecc--CCCCCccc
Q 018327 325 GEDVHVCDEIYSN-------GGVVLPHKEIKS--SILKPEIV 357 (358)
Q Consensus 325 ~~~~~i~~~~~i~-------~~~v~~~~~i~~--~~~~~~~~ 357 (358)
|+++.|++++.+. ++.+.+++.+.+ +++++.++
T Consensus 82 g~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v 123 (155)
T cd04745 82 GRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLI 123 (155)
T ss_pred CCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEE
Confidence 6666666555442 455566666665 46665543
No 127
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.48 E-value=5.3e-13 Score=116.10 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=9.2
Q ss_pred eEECCCcEECCCcEEe
Q 018327 287 CTVMRGVRIKKHACIS 302 (358)
Q Consensus 287 ~~i~~~~~i~~~~~i~ 302 (358)
..||++++|++++.|.
T Consensus 78 v~IG~~~~I~e~vtI~ 93 (255)
T PRK12461 78 LEIGDRNVIREGVTIH 93 (255)
T ss_pred eEECCceEECCccEEe
Confidence 4455666666666554
No 128
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.48 E-value=6.3e-13 Score=110.85 Aligned_cols=104 Identities=20% Similarity=0.308 Sum_probs=71.0
Q ss_pred EECCCCEECCCcEECCCcEECCCCEECCCcEEee----eEECCCcEECCCcEEec-----cEEccCCEECCccEEcCccE
Q 018327 253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR----CTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVENMTI 323 (358)
Q Consensus 253 ~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~----~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~~~~ 323 (358)
.+++++.|++++.|.+++.||++|.|+.+|+|.. ++|+++|.|+++|+|.. ++|++++.||.++.+.+ ++
T Consensus 12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g-~v 90 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG-CV 90 (196)
T ss_pred ccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEee-EE
Confidence 3455555555555555566666666666666642 57788888888888854 68999999998877665 66
Q ss_pred ECCCcEECCceE------Ec-CcEEccCceeccCC--CCCccc
Q 018327 324 LGEDVHVCDEIY------SN-GGVVLPHKEIKSSI--LKPEIV 357 (358)
Q Consensus 324 i~~~~~i~~~~~------i~-~~~v~~~~~i~~~~--~~~~~~ 357 (358)
||+++.||.++. ++ ++.+.+++.|.+++ |+++++
T Consensus 91 IG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~ 133 (196)
T PRK13627 91 IGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLL 133 (196)
T ss_pred ECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEE
Confidence 666666666544 43 56777888888876 677665
No 129
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.48 E-value=5.1e-13 Score=122.16 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=38.8
Q ss_pred cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-cEEccCCEECCccEE
Q 018327 241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARV 318 (358)
Q Consensus 241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i 318 (358)
.+.+.+.+.+++++++++.|+++++|++++.||++|+|+++|.|. ++.||++|.|+++++|.+ +.||++|.|++++.|
T Consensus 102 ~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I 181 (343)
T PRK00892 102 GIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVI 181 (343)
T ss_pred cCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEE
Confidence 344445555555555555555555555445555555555555554 444555555555555544 335555555555554
No 130
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.47 E-value=5.9e-13 Score=102.92 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=52.9
Q ss_pred CCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccE
Q 018327 244 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTI 323 (358)
Q Consensus 244 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ 323 (358)
+++.+.++++|++++.|++++.|.+++.||++|.|++++.+.++.+. +..+...+.+.+++|+++|+||.++.+.+++.
T Consensus 9 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~-~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ 87 (119)
T cd03358 9 TNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYP-RSKIYRKWELKGTTVKRGASIGANATILPGVT 87 (119)
T ss_pred CCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCC-ccccccccccCCcEECCCcEECcCCEEeCCcE
Confidence 33444444444444444444444444444444444444444433222 22233345566778888888888888877778
Q ss_pred ECCCcEECCceEEcC
Q 018327 324 LGEDVHVCDEIYSNG 338 (358)
Q Consensus 324 i~~~~~i~~~~~i~~ 338 (358)
|++++.|++++.+..
T Consensus 88 ig~~~~i~~~~~v~~ 102 (119)
T cd03358 88 IGEYALVGAGAVVTK 102 (119)
T ss_pred ECCCCEEccCCEEeC
Confidence 888877777766654
No 131
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.47 E-value=1.2e-12 Score=111.19 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=15.0
Q ss_pred CcEEccCceeccCCCCCccc
Q 018327 338 GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 338 ~~~v~~~~~i~~~~~~~~~~ 357 (358)
++.+.+++.+.+++|+++++
T Consensus 174 ~~~i~~~s~v~~~~~~~~~~ 193 (205)
T cd03352 174 GVVIGAGSGVTSIVPPGEYV 193 (205)
T ss_pred CCEEcCCCEEeeECCCCCEE
Confidence 45667778888888888765
No 132
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.47 E-value=5.1e-13 Score=127.47 Aligned_cols=117 Identities=18% Similarity=0.360 Sum_probs=72.9
Q ss_pred ccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEe-cc--------------
Q 018327 240 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SS-------------- 304 (358)
Q Consensus 240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~-~~-------------- 304 (358)
..+++++.|.+++.||+++.|+++|+|. +++||++|.|++++.|.+|+|++++.|++++.|. ++
T Consensus 272 ~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 272 VEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred CEEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 3456677777777777777777777774 6777777777777766666666666666655554 23
Q ss_pred --------------------EEccCCEECCccE-------------EcCccEECCCcEECCceEEc-CcEEccCceeccC
Q 018327 305 --------------------IIGWHSTVGQWAR-------------VENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSS 350 (358)
Q Consensus 305 --------------------~i~~~~~ig~~~~-------------i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~ 350 (358)
.||++|.||+++. |+++++||.++.|..++.|+ ++.+.+++.|.+|
T Consensus 351 ~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~ 430 (456)
T PRK09451 351 KKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRD 430 (456)
T ss_pred eceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccc
Confidence 3344444444332 23333333334444444453 6777889999999
Q ss_pred CCCCccc
Q 018327 351 ILKPEIV 357 (358)
Q Consensus 351 ~~~~~~~ 357 (358)
+|+++++
T Consensus 431 v~~~~~~ 437 (456)
T PRK09451 431 VAENELV 437 (456)
T ss_pred cCCCCEE
Confidence 9998776
No 133
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.47 E-value=1.2e-12 Score=106.49 Aligned_cols=107 Identities=18% Similarity=0.291 Sum_probs=85.4
Q ss_pred ccCCcEEe--cceEECCCCEECCCcEECCC---cEECCCCEECCCcEEee-------------eEECCCcEECCCcEEec
Q 018327 242 LATGANIV--GNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-------------CTVMRGVRIKKHACISS 303 (358)
Q Consensus 242 ~~~~~~i~--~~~~i~~~~~i~~~~~i~~~---~~ig~~~~ig~~~~i~~-------------~~i~~~~~i~~~~~i~~ 303 (358)
++..+.+. ++.++++++.|+++++|.++ +.||++|.|+++|.|.. +.|++++.|++++.+.+
T Consensus 10 i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~ 89 (161)
T cd03359 10 VSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNA 89 (161)
T ss_pred ecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEe
Confidence 44445554 37778888888888887754 58888888888888863 47999999999999999
Q ss_pred cEEccCCEECCccEEcCccEECCCcEECCceEEc-CcEEccCceec
Q 018327 304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIK 348 (358)
Q Consensus 304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~ 348 (358)
+.|++++.||.++.|..+++|++++.|++++.+. +..+.|...+.
T Consensus 90 ~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~ 135 (161)
T cd03359 90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVS 135 (161)
T ss_pred eEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEe
Confidence 9999999999999999999999999999998885 55555555443
No 134
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.46 E-value=7.9e-13 Score=126.25 Aligned_cols=116 Identities=19% Similarity=0.315 Sum_probs=78.8
Q ss_pred cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-c---------------
Q 018327 241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-S--------------- 304 (358)
Q Consensus 241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~--------------- 304 (358)
.+.+++.|.+++.||+++.|+++++|. +++||++|+|+.++.|.+++|++++.|++++++.. +
T Consensus 276 ~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~ 354 (459)
T PRK14355 276 TIYPGVCISGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETK 354 (459)
T ss_pred EEeCCcEEeCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCcccc
Confidence 456677777777777888888888775 78888888888888888888888887776665543 3
Q ss_pred -------------------EEccCCEECCccEEc-------CccEECCCcEECCc------eEEc-CcEEccCceeccCC
Q 018327 305 -------------------IIGWHSTVGQWARVE-------NMTILGEDVHVCDE------IYSN-GGVVLPHKEIKSSI 351 (358)
Q Consensus 305 -------------------~i~~~~~ig~~~~i~-------~~~~i~~~~~i~~~------~~i~-~~~v~~~~~i~~~~ 351 (358)
+|+++|.||+++.+. .+++||+++.||.+ +.|+ ++.+.+++.|.+|+
T Consensus 355 ~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~v 434 (459)
T PRK14355 355 KIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTKDV 434 (459)
T ss_pred CCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcccC
Confidence 444445555443221 12334444444444 4453 67788999999999
Q ss_pred CCCccc
Q 018327 352 LKPEIV 357 (358)
Q Consensus 352 ~~~~~~ 357 (358)
|+++++
T Consensus 435 ~~~~~~ 440 (459)
T PRK14355 435 PPDSLA 440 (459)
T ss_pred CCCcEE
Confidence 998775
No 135
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.46 E-value=2.1e-12 Score=118.90 Aligned_cols=114 Identities=19% Similarity=0.312 Sum_probs=81.7
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|.+||||||.|+||+. .||+|+|++|+|||+|+++.+.. .+++++|+++...+.+.+++. ++.+.....
T Consensus 6 i~~VILAgG~s~Rmgg----~~K~ll~i~Gkpll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~------~~~~i~d~~ 74 (366)
T PRK14489 6 IAGVILAGGLSRRMNG----RDKALILLGGKPLIERVVDRLRP-QFARIHLNINRDPARYQDLFP------GLPVYPDIL 74 (366)
T ss_pred ceEEEEcCCcccCCCC----CCCceeEECCeeHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhcc------CCcEEecCC
Confidence 4699999999999952 58999999999999999999986 499999977765444433322 123322222
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-ec-cCHHHHHHHHHhc
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SE-YPFAEMIEFHKAH 128 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~-~~l~~~~~~~~~~ 128 (358)
....|...+++.+++.+ .. +.+++++||.. .. ..+..+++.+...
T Consensus 75 ~g~~G~~~si~~gl~~~--~~-~~vlv~~~D~P~i~~~~i~~L~~~~~~~ 121 (366)
T PRK14489 75 PGFQGPLSGILAGLEHA--DS-EYLFVVACDTPFLPENLVKRLSKALAIE 121 (366)
T ss_pred CCCCChHHHHHHHHHhc--CC-CcEEEeeCCcCCCCHHHHHHHHHHhhcc
Confidence 33358888999999887 33 37999999983 33 3367777765443
No 136
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.46 E-value=4.1e-12 Score=107.76 Aligned_cols=207 Identities=16% Similarity=0.234 Sum_probs=119.8
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEec
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
.|||+|||.|+||+. ..||++++++|+|+|.|+++.|.+.. +++|+|++.+.. +.+++.+.+ ..+.+.
T Consensus 2 ~aIilAaG~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----~~v~iv--- 71 (221)
T PF01128_consen 2 AAIILAAGSGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----KKVKIV--- 71 (221)
T ss_dssp EEEEEESS-STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----TTEEEE---
T ss_pred EEEEeCCccchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----CCEEEe---
Confidence 589999999999986 78999999999999999999998865 999999999753 333333332 233332
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHh-cCCeeEEEecCCCCeeeEEEcCCCCcEEE
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKA-HGGEASIMVDEPSKYGVVVMEESTGKVEK 156 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~v~~ 156 (358)
.......+|++.++..+.... +.+++..+-- +.. ..+.++++...+ .++....+ |....+...+++ +.+..
T Consensus 72 -~GG~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~---p~~DTik~v~~~-~~v~~ 145 (221)
T PF01128_consen 72 -EGGATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAAREGHGAAIPAL---PVTDTIKRVDDD-GFVTE 145 (221)
T ss_dssp -E--SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEEEE---E-SSEEEEESTT-SBEEE
T ss_pred -cCChhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEEEE---eccccEEEEecC-Ccccc
Confidence 244556789999999886544 3677777766 333 347888888766 33322222 222345555654 66665
Q ss_pred EeecCCCCCCCeEEE-EEEEEChhhhhhccCCC----CCcccchHHHHHh-cCceEEEeecCeEEecCCHHHHHHHHHHH
Q 018327 157 FVEKPKLFVGNKINA-GIYLLNPAVLDRIELRP----TSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRLY 230 (358)
Q Consensus 157 ~~ek~~~~~~~~~~~-Giy~~~~~~l~~l~~~~----~~~~~d~l~~l~~-~~~v~~~~~~~~~~di~t~~dy~~a~~~~ 230 (358)
..+ ++.+..+ ---.|+.+.+....+.. ..+-.|. ..+.. ..+++...-+..-.-+.||+|+..+...+
T Consensus 146 tld-----R~~l~~~QTPQ~F~~~~l~~a~~~a~~~~~~~tDda-sl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 146 TLD-----RSKLWAVQTPQAFRFELLLEAYEKADEEGFEFTDDA-SLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp EET-----GGGEEEEEEEEEEEHHHHHHHHHTHHHHTHHHSSHH-HHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred cCC-----HHHeeeecCCCeecHHHHHHHHHHHHhcCCCccCHH-HHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 543 2333322 22356666555432221 1121222 12222 34465555555667789999998886543
No 137
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.46 E-value=7.9e-13 Score=109.90 Aligned_cols=104 Identities=20% Similarity=0.308 Sum_probs=73.9
Q ss_pred EECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEE-----eccEEccCCEECCccEEcCccE
Q 018327 253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI-----SSSIIGWHSTVGQWARVENMTI 323 (358)
Q Consensus 253 ~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i-----~~~~i~~~~~ig~~~~i~~~~~ 323 (358)
.|++++.|++++.|.+++.||++|.|+.+|.|. ..+||++|.|+++|+| .+++|++++.|+.++.|.+ |+
T Consensus 10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~-si 88 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG-CI 88 (192)
T ss_pred cCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcC-CE
Confidence 446666666666666677777777777777775 4688999999999998 3589999999998887776 77
Q ss_pred ECCCcEECCceEE------c-CcEEccCceecc--CCCCCccc
Q 018327 324 LGEDVHVCDEIYS------N-GGVVLPHKEIKS--SILKPEIV 357 (358)
Q Consensus 324 i~~~~~i~~~~~i------~-~~~v~~~~~i~~--~~~~~~~~ 357 (358)
|++++.||.++.+ + ++.+.+++.|.+ ++|+++++
T Consensus 89 Ig~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~ 131 (192)
T TIGR02287 89 VGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLV 131 (192)
T ss_pred ECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEE
Confidence 7777777665544 2 455566666666 45665543
No 138
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.46 E-value=1.2e-12 Score=106.57 Aligned_cols=104 Identities=19% Similarity=0.287 Sum_probs=54.7
Q ss_pred ECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEecc-----------EEccCCEECCccEE
Q 018327 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISSS-----------IIGWHSTVGQWARV 318 (358)
Q Consensus 254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~~~-----------~i~~~~~ig~~~~i 318 (358)
|++++.|.+++.|.+++.||++|.|++++.|. .++||++|.|+++|+|.++ .||+++.++.++.+
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i 81 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC 81 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence 44555555555555555556666666666553 2466666666666666543 35555555444433
Q ss_pred c-----CccEECCCcEECCceEEc-CcEEccCceeccC--CCCCccc
Q 018327 319 E-----NMTILGEDVHVCDEIYSN-GGVVLPHKEIKSS--ILKPEIV 357 (358)
Q Consensus 319 ~-----~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~--~~~~~~~ 357 (358)
. ++|+||.++.|+.++.|+ ++.+++++.|.++ +|+++++
T Consensus 82 ~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi 128 (164)
T cd04646 82 EALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVI 128 (164)
T ss_pred EeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEE
Confidence 3 333333333333444443 4555556666665 6665543
No 139
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.46 E-value=7.8e-13 Score=102.22 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=68.8
Q ss_pred ECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEcc----------CCEECCccEEcCcc
Q 018327 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGW----------HSTVGQWARVENMT 322 (358)
Q Consensus 254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~----------~~~ig~~~~i~~~~ 322 (358)
+++++.|+++++|.+++.||++|.|++++.|. +++|+++|.|++++.+.++.+.. ++.||+++.|..++
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~ 80 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANA 80 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCC
Confidence 46777777888887788888888888888886 78888888888888888754433 33444444444444
Q ss_pred EECCCcEECCceEEcCcEEccCceeccCCCCCcccC
Q 018327 323 ILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 358 (358)
Q Consensus 323 ~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~~~~~~ 358 (358)
++.++++|++ ++.+.+++.+.+++|++++++
T Consensus 81 ~v~~~~~ig~-----~~~i~~~~~v~~~i~~~~~~~ 111 (119)
T cd03358 81 TILPGVTIGE-----YALVGAGAVVTKDVPPYALVV 111 (119)
T ss_pred EEeCCcEECC-----CCEEccCCEEeCcCCCCeEEe
Confidence 4444444444 455556777888999987763
No 140
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.46 E-value=7.7e-13 Score=94.65 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=70.4
Q ss_pred ECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceeccCC
Q 018327 272 VGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSI 351 (358)
Q Consensus 272 ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~ 351 (358)
||+++.|++++.|.++.|+++|.|++++.|.++++++++.|+.++.+.+ +++++++.|++++.+.+++++++..|..+.
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~-svi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLEN-CIIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEec-cEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 6788888888888888899999999999999999999999999999977 999999999999999999999998887753
No 141
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.46 E-value=1e-12 Score=112.77 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=13.0
Q ss_pred CEECCCcEECCCcEECCCCEECCCcEEe
Q 018327 258 AQIGEGCLIGPDVAVGPGCVVESGVRLS 285 (358)
Q Consensus 258 ~~i~~~~~i~~~~~ig~~~~ig~~~~i~ 285 (358)
+.||+++.|..++.||++|.||+||.|.
T Consensus 130 a~IGeGt~I~~~a~IG~~v~IG~nv~I~ 157 (269)
T TIGR00965 130 AYVDEGTMVDTWATVGSCAQIGKNVHLS 157 (269)
T ss_pred cEECCCCEECCCcEECCCCEECCCCEEc
Confidence 4444444444444444444444444443
No 142
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.45 E-value=1.4e-12 Score=110.48 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=70.3
Q ss_pred cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCc
Q 018327 243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM 321 (358)
Q Consensus 243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~ 321 (358)
...+.+.+++.+++++.|++++.|+++++|++++.||++|.|. +++|++++.|++++.|. .++.++.+++++++
T Consensus 85 ~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~-----~~~~i~~~~~ig~~ 159 (201)
T TIGR03570 85 RFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIA-----PGVTLSGGVVIGEG 159 (201)
T ss_pred cceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEEC-----CCCEEeCCcEECCC
Confidence 3445666777777777777777777777777777777777775 66666666666655554 44444444444444
Q ss_pred cEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327 322 TILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 322 ~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~ 357 (358)
+.||.++++.+++.++ ++.+.+++.+.+++|+++++
T Consensus 160 ~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~~~~~~~~ 196 (201)
T TIGR03570 160 VFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGGVV 196 (201)
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEECCcCCCCCEE
Confidence 5555555555555553 45566678888889988775
No 143
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.44 E-value=8.9e-12 Score=108.15 Aligned_cols=186 Identities=18% Similarity=0.220 Sum_probs=112.1
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccCh--HHHHHHHHhhhhccCcEEEEec
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~--~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
|||||+|.|+||+ +|+|+|++|+|||+|+++.+..++ +++++|+++... +.+.+++.. .++.+....
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~----~~v~~v~~~ 71 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK----LGVKVFRGS 71 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH----cCCeEEECC
Confidence 7999999999993 499999999999999999999988 899999998764 455555543 245443322
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee--ccCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEE
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS--EYPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKF 157 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 157 (358)
. .+.......+.... . .+.++++.||..+ ...++.+++.+...+.+.+.. . +
T Consensus 72 ~---~~~l~~~~~~~~~~--~-~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~------------~---~----- 125 (233)
T cd02518 72 E---EDVLGRYYQAAEEY--N-ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSN------------T---L----- 125 (233)
T ss_pred c---hhHHHHHHHHHHHc--C-CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEec------------C---C-----
Confidence 2 12222222222222 2 3489999999933 345889998876543322110 1 1
Q ss_pred eecCCCCCCCeEEEEEEEEChhhhhhccCCCC-CcccchHHHHHhcCc--eEEEeec--C-----eEEecCCHHHHHHHH
Q 018327 158 VEKPKLFVGNKINAGIYLLNPAVLDRIELRPT-SIEKEVFPKIALEGK--LFAMVLP--G-----FWMDIGQPRDYITGL 227 (358)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~-~~~~d~l~~l~~~~~--v~~~~~~--~-----~~~di~t~~dy~~a~ 227 (358)
+ .+.....+.-+|+...+..+..... ...++.+..++++.. +.....+ + ...|+|||+||..+.
T Consensus 126 --~----~g~Pv~~~~~~~~~~~~~~l~~~~gd~g~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DiDt~eD~~~~~ 199 (233)
T cd02518 126 --P----RTYPDGLDVEVFTRDALERAAAEADDPYEREHVTPYIRRHPELFRIGYLEAPPDRLSDLRLTVDTPEDFELIK 199 (233)
T ss_pred --C----CCCCCceEEEEEEHHHHHHHHHhCCChhhhcCCCHHHHhChHHeEEeeecCCcccCcCceEecCCHHHHHHHH
Confidence 1 1222334567788777776643222 222333322232222 3332222 2 368999999998776
Q ss_pred HHH
Q 018327 228 RLY 230 (358)
Q Consensus 228 ~~~ 230 (358)
..+
T Consensus 200 ~~~ 202 (233)
T cd02518 200 EIY 202 (233)
T ss_pred HHH
Confidence 544
No 144
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.44 E-value=2.8e-12 Score=95.26 Aligned_cols=85 Identities=22% Similarity=0.247 Sum_probs=76.3
Q ss_pred cceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCc
Q 018327 250 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV 328 (358)
Q Consensus 250 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~ 328 (358)
+++++++++.|++++.+.++++||++|.|++++.|. ++.|+++|.|+. .+.+++|++++.++.++.|.+ ++||+++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~-siIg~~v 86 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGH-SYLGSWC 86 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEee-eEECCCC
Confidence 678999999999999998889999999999999998 799999999975 688899999999999999986 9999999
Q ss_pred EECCceEEc
Q 018327 329 HVCDEIYSN 337 (358)
Q Consensus 329 ~i~~~~~i~ 337 (358)
.||+++...
T Consensus 87 ~ig~~~~~~ 95 (101)
T cd05635 87 NLGAGTNNS 95 (101)
T ss_pred EECCCceec
Confidence 999998764
No 145
>PLN02296 carbonate dehydratase
Probab=99.43 E-value=1.8e-12 Score=113.03 Aligned_cols=101 Identities=21% Similarity=0.266 Sum_probs=64.2
Q ss_pred CCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEe-----------ccEEccCCEECCccEEcC
Q 018327 256 ESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACIS-----------SSIIGWHSTVGQWARVEN 320 (358)
Q Consensus 256 ~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~-----------~~~i~~~~~ig~~~~i~~ 320 (358)
+++.|.+++.+.+++.||++|.|+.+|.|. +++||++|.|+++|+|. +++||++|.||.++.|.+
T Consensus 57 ~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g 136 (269)
T PLN02296 57 KDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHG 136 (269)
T ss_pred CCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecC
Confidence 333333334343445555555555555554 35788888888888885 478999999998877644
Q ss_pred ccEECCCcEECCce------EEc-CcEEccCceeccC--CCCCccc
Q 018327 321 MTILGEDVHVCDEI------YSN-GGVVLPHKEIKSS--ILKPEIV 357 (358)
Q Consensus 321 ~~~i~~~~~i~~~~------~i~-~~~v~~~~~i~~~--~~~~~~~ 357 (358)
|+||++|.||.++ .|+ ++.+.+++.|.++ +|+++++
T Consensus 137 -~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~ 181 (269)
T PLN02296 137 -CTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVW 181 (269)
T ss_pred -CEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEE
Confidence 5555555555554 443 5666777788777 7887764
No 146
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.43 E-value=1e-12 Score=98.62 Aligned_cols=79 Identities=23% Similarity=0.437 Sum_probs=70.5
Q ss_pred CEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEc
Q 018327 258 AQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN 337 (358)
Q Consensus 258 ~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 337 (358)
+.|++++.| .+++||++|.|+ ++.|.+|++++++.|+++|.|.++++++++.||.++.+.+ ++|++++.|++++.+.
T Consensus 2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~-siig~~~~Ig~~~~v~ 78 (104)
T cd04651 2 PYIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRR-AIIDKNVVIPDGVVIG 78 (104)
T ss_pred ceecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEe-EEECCCCEECCCCEEC
Confidence 567778878 488999999999 8999999999999999999999999999999999999976 9999999999999987
Q ss_pred Cc
Q 018327 338 GG 339 (358)
Q Consensus 338 ~~ 339 (358)
+.
T Consensus 79 ~~ 80 (104)
T cd04651 79 GD 80 (104)
T ss_pred CC
Confidence 54
No 147
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.43 E-value=1.9e-11 Score=103.14 Aligned_cols=211 Identities=16% Similarity=0.202 Sum_probs=121.3
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEecc-ChHHHHHHHHhhhhccCcEEEEec
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
.+||+|||.|+||.. ..||++++++|+||++|+++.|.... +++|+|+++. ..+.+.++.. ...+..+..+
T Consensus 6 ~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~---~~~~~~v~~v- 78 (230)
T COG1211 6 SAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK---LSADKRVEVV- 78 (230)
T ss_pred EEEEEcCccccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh---hccCCeEEEe-
Confidence 589999999999998 89999999999999999999998887 8999999997 3333333332 1222233222
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe-eec-cCHHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEE
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKF 157 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~-i~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 157 (358)
.+...-.+|++.+++.+.+..++.||+..+-- ++. ..++++++.....++-...+ |-...+...+.+ +.+...
T Consensus 79 -~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~al---pv~DTik~~~~~-~~i~~t 153 (230)
T COG1211 79 -KGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILAL---PVTDTLKRVDAD-GNIVET 153 (230)
T ss_pred -cCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEEe---eccCcEEEecCC-CCeeec
Confidence 34556678999999999542343566665555 333 34788884333232222222 222234444433 555444
Q ss_pred eecCCCCCCCeEEE-EEEEEChhhhhhccC----CCCCcccchHHHHHhcCceEEEeecCeEEecCCHHHHHHHHHH
Q 018327 158 VEKPKLFVGNKINA-GIYLLNPAVLDRIEL----RPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRL 229 (358)
Q Consensus 158 ~ek~~~~~~~~~~~-Giy~~~~~~l~~l~~----~~~~~~~d~l~~l~~~~~v~~~~~~~~~~di~t~~dy~~a~~~ 229 (358)
... +.+.-+ ---.|+.+.|..... ....+-.|.--......++..+.=+-+-.-+.||+|+.-+...
T Consensus 154 ~~R-----~~l~~~QTPQ~F~~~~L~~a~~~a~~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~i 225 (230)
T COG1211 154 VDR-----SGLWAAQTPQAFRLELLKQALARAFAEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAI 225 (230)
T ss_pred cCh-----hhhhhhhCCccccHHHHHHHHHHHHhcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHH
Confidence 322 111100 002344444432211 1122222222111123455555545567789999999887643
No 148
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.42 E-value=2.6e-12 Score=99.60 Aligned_cols=95 Identities=20% Similarity=0.285 Sum_probs=64.3
Q ss_pred ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEccCCE
Q 018327 242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHST 311 (358)
Q Consensus 242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~ 311 (358)
+.+++.+...+.|++++.|.+++++..++.||++|.|.. +|. +++|+++|.|++++.|.. +.||++|+
T Consensus 4 i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~ 81 (147)
T cd04649 4 IADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCL 81 (147)
T ss_pred ecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCE
Confidence 345666666666777777777666666677777777662 232 455566666666666652 46888888
Q ss_pred ECCccEEcCccEECCCcEECCceEEcCcE
Q 018327 312 VGQWARVENMTILGEDVHVCDEIYSNGGV 340 (358)
Q Consensus 312 ig~~~~i~~~~~i~~~~~i~~~~~i~~~~ 340 (358)
||.++.| +..||++++||+++.+....
T Consensus 82 IG~ga~I--gv~IG~~~vIGaGsvV~k~t 108 (147)
T cd04649 82 LGANSGI--GISLGDNCIVEAGLYVTAGT 108 (147)
T ss_pred ECCCCEE--eEEECCCCEECCCCEEeCCe
Confidence 8888888 48888888888888775433
No 149
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.41 E-value=5.6e-12 Score=107.16 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=4.8
Q ss_pred eEECCCcEECCCc
Q 018327 287 CTVMRGVRIKKHA 299 (358)
Q Consensus 287 ~~i~~~~~i~~~~ 299 (358)
+.|++++.|++++
T Consensus 56 ~~Ig~~~~I~~~~ 68 (205)
T cd03352 56 CIIGDRVIIHSGA 68 (205)
T ss_pred CEECCCcEECCCC
Confidence 3333333333333
No 150
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.41 E-value=6e-12 Score=97.61 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=32.4
Q ss_pred EEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEc
Q 018327 247 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIG 307 (358)
Q Consensus 247 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~ 307 (358)
.+.+.+++.+++.|+++++|..++++..++.||++|.|.. .|+.++.|+++|.|.+ +.|.
T Consensus 3 ~i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~ 63 (147)
T cd04649 3 RIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM 63 (147)
T ss_pred EecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE
Confidence 3445555555555555555555555555555555555532 4445566666655555 4444
No 151
>PLN02472 uncharacterized protein
Probab=99.41 E-value=3.1e-12 Score=110.04 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=67.8
Q ss_pred ECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEe-----------ccEEccCCEECCccEE
Q 018327 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACIS-----------SSIIGWHSTVGQWARV 318 (358)
Q Consensus 254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~-----------~~~i~~~~~ig~~~~i 318 (358)
+++++.|.+++++.+++.||++|.|+.+++|. ...||+++.|+++|+|. +++||++|.||.++.|
T Consensus 62 i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L 141 (246)
T PLN02472 62 VAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL 141 (246)
T ss_pred cCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEE
Confidence 34444444444444455555555555555554 25788888888888884 4789999999988887
Q ss_pred cCccEECCCcEECCceEEc-------CcEEccCceec--cCCCCCccc
Q 018327 319 ENMTILGEDVHVCDEIYSN-------GGVVLPHKEIK--SSILKPEIV 357 (358)
Q Consensus 319 ~~~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~--~~~~~~~~~ 357 (358)
.+ |+|++++.||.++++. ++.+.+++.|. .++|+++++
T Consensus 142 ~~-~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~ 188 (246)
T PLN02472 142 RS-CTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELW 188 (246)
T ss_pred CC-eEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEE
Confidence 65 7777777777766653 45566666666 457777654
No 152
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.40 E-value=2.4e-12 Score=106.29 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=19.3
Q ss_pred EEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327 305 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 338 (358)
Q Consensus 305 ~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 338 (358)
.||+++.+..++.|..+|+||++|++.+++.+.|
T Consensus 108 ~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAG 141 (260)
T COG1043 108 RIGDNNLIMAYAHVAHDCVIGNNCILANNATLAG 141 (260)
T ss_pred EECCCCEEEEeeeeeccceecCcEEEecCCeEec
Confidence 3555555555555555566666666555555544
No 153
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.40 E-value=3.2e-12 Score=121.76 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=70.8
Q ss_pred EEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEe-ccEEccCCEECCccEEcCccEEC
Q 018327 247 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVENMTILG 325 (358)
Q Consensus 247 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~i~~~~~i~ 325 (358)
.+++.+.|++++.|+++++|++++.||++|.|+.++.|.+++||++|+|++++.|. +++||++|.||+++.+.+ ++|+
T Consensus 264 ~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~-~~i~ 342 (446)
T PRK14353 264 FFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKN-AKLG 342 (446)
T ss_pred EECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEec-eEEC
Confidence 56678899999999999999999999999999999999999999999999999998 589999999999887754 4444
Q ss_pred CCcEEC
Q 018327 326 EDVHVC 331 (358)
Q Consensus 326 ~~~~i~ 331 (358)
+++.++
T Consensus 343 ~~~~i~ 348 (446)
T PRK14353 343 EGAKVN 348 (446)
T ss_pred CCCEEC
Confidence 443333
No 154
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.40 E-value=2.3e-12 Score=122.96 Aligned_cols=103 Identities=15% Similarity=0.299 Sum_probs=59.4
Q ss_pred CCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC-------ccEECCC
Q 018327 255 HESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------MTILGED 327 (358)
Q Consensus 255 ~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~i~~~ 327 (358)
++++.|++++.|+++++||++|+|+.++.|.+++|++++.|++++.+.+++|+++|.||.++.+.+ +++||++
T Consensus 317 g~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~ 396 (450)
T PRK14360 317 GDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDR 396 (450)
T ss_pred cCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCC
Confidence 333333444444334444444444444444444445555555555555566777777777655432 3555555
Q ss_pred cEECCceE------Ec-CcEEccCceeccCCCCCccc
Q 018327 328 VHVCDEIY------SN-GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 328 ~~i~~~~~------i~-~~~v~~~~~i~~~~~~~~~~ 357 (358)
+.||.++. ++ ++.+.+++.|.+|+|+.+++
T Consensus 397 ~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~ 433 (450)
T PRK14360 397 SKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLA 433 (450)
T ss_pred eEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEE
Confidence 55555544 43 56778899999999998776
No 155
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.38 E-value=5e-12 Score=111.01 Aligned_cols=107 Identities=26% Similarity=0.388 Sum_probs=86.2
Q ss_pred cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec-------------cEE
Q 018327 241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-------------SII 306 (358)
Q Consensus 241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-------------~~i 306 (358)
.+++.+.|++.+.|++++.|+++++|++++.||++|+|++++.|. ++.||++|.|+++++|.+ +.|
T Consensus 4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~I 83 (262)
T PRK05289 4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVI 83 (262)
T ss_pred ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEE
Confidence 467888899999999999999999999999999999999999998 799999999999999974 789
Q ss_pred ccCCEECCccEEcCc-------cEECCCcEECCceEEc-CcEEccCcee
Q 018327 307 GWHSTVGQWARVENM-------TILGEDVHVCDEIYSN-GGVVLPHKEI 347 (358)
Q Consensus 307 ~~~~~ig~~~~i~~~-------~~i~~~~~i~~~~~i~-~~~v~~~~~i 347 (358)
|++|.|+++++|..+ ++||+++.|++++.+. ++.++.+..+
T Consensus 84 G~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i 132 (262)
T PRK05289 84 GDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVIL 132 (262)
T ss_pred CCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEE
Confidence 999999998888753 3677776666666654 4444444443
No 156
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.38 E-value=4.4e-12 Score=90.32 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=68.2
Q ss_pred EECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcC-cEEccCceec
Q 018327 271 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEIK 348 (358)
Q Consensus 271 ~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-~~v~~~~~i~ 348 (358)
+||++|.|++++.|.+++|+++|.|++++.|.+++|++++.|++++.+.+ +++++++.|++++.+.+ +.+.++..+.
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~-svv~~~~~i~~~~~i~~~~~ig~~~~i~ 78 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVD-SIIGDNAVIGENVRVVNLCIIGDDVVVE 78 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEEC-CEECCCCEECCCCEEcCCeEECCCeEEC
Confidence 46788888888888888999999999999999999999999999999987 99999999999999975 8877777664
No 157
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.38 E-value=5.5e-12 Score=109.40 Aligned_cols=91 Identities=16% Similarity=0.243 Sum_probs=68.3
Q ss_pred cCCcEEecceEECCCCEECCCcEECC--CcEECCCCEECCCcEEeeeEECCCcEECC---CcEEeccEEccCCEECCccE
Q 018327 243 ATGANIVGNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKK---HACISSSIIGWHSTVGQWAR 317 (358)
Q Consensus 243 ~~~~~i~~~~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~ig~~~~ 317 (358)
.....+..++.|+++++||+++.|.. +.+||++|+||++|.| +++|+||. .+.....+||++|.||.+++
T Consensus 133 ~~~~~~~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~ 207 (273)
T PRK11132 133 QNQISVAFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAK 207 (273)
T ss_pred hhcceeeeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCE
Confidence 44555567788888888888888863 4566666666666555 66666653 23334579999999999999
Q ss_pred EcCccEECCCcEECCceEEcC
Q 018327 318 VENMTILGEDVHVCDEIYSNG 338 (358)
Q Consensus 318 i~~~~~i~~~~~i~~~~~i~~ 338 (358)
|.+++.||++++||++++|..
T Consensus 208 Ilggv~IG~~a~IGAgSvV~~ 228 (273)
T PRK11132 208 ILGNIEVGRGAKIGAGSVVLQ 228 (273)
T ss_pred EcCCCEECCCCEECCCCEECc
Confidence 999999999999999999865
No 158
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.38 E-value=4.5e-12 Score=121.12 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=23.3
Q ss_pred cEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327 322 TILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 322 ~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~ 357 (358)
+++|.++.|.+++.|+ ++.++|++.|.+|+|+.+++
T Consensus 405 ~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~~ 441 (456)
T PRK14356 405 AFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSLA 441 (456)
T ss_pred cEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcEE
Confidence 3333334444444453 67778899999999998765
No 159
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.37 E-value=6.1e-12 Score=101.63 Aligned_cols=83 Identities=23% Similarity=0.256 Sum_probs=60.9
Q ss_pred ECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEec-----cEEccCCEECCccEEcCccEE
Q 018327 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVENMTIL 324 (358)
Q Consensus 254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~~~~i 324 (358)
+++++.|+++++|.+++.||++|.|+++++|. .++||+++.|+++|.|.+ ++|++++.|+.++.+.+ ++|
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~I 80 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG-CTI 80 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEee-eEE
Confidence 45555666666665666677777777777665 258899999988888887 48888998888888876 777
Q ss_pred CCCcEECCceEEc
Q 018327 325 GEDVHVCDEIYSN 337 (358)
Q Consensus 325 ~~~~~i~~~~~i~ 337 (358)
++++.|++++.+.
T Consensus 81 g~~~~Ig~~~~v~ 93 (153)
T cd04645 81 GDNCLIGMGAIIL 93 (153)
T ss_pred CCCCEECCCCEEc
Confidence 7777777666664
No 160
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.37 E-value=5.2e-12 Score=89.97 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=69.2
Q ss_pred EECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEc-CcEEccCceec
Q 018327 271 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEIK 348 (358)
Q Consensus 271 ~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~ 348 (358)
+||++|+|++++.|.++.|++++.|++++.|.++++++++.|+++++|.+ +++++++.|++++.+. ++.+.++..|.
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~v~~~~~ig 78 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHH-SIVADGAVIGKGCTIPPGSLISFGVVIG 78 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeC-cEEcCCCEECCCCEECCCCEEeCCcEeC
Confidence 47888999999999999999999999999999999999999999999986 9999999999999996 67777776653
No 161
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.37 E-value=9.2e-12 Score=101.96 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=34.9
Q ss_pred cEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEc
Q 018327 270 VAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN 337 (358)
Q Consensus 270 ~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 337 (358)
+.||++|.|+.++.|. ++.|+++|.|+.+|.|.++.||++|.||.++.|.+ +.+++++.+++++.+.
T Consensus 65 v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~-~~i~~~~~v~~~~~v~ 132 (167)
T cd00710 65 VWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDG-VEIPPGRYVPAGAVIT 132 (167)
T ss_pred EEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCCCEEcCCCEEeC-CEeCCCCEECCCCEEc
Confidence 3445555555555554 35555555555555555555555555555555533 4555555555444443
No 162
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.37 E-value=1.9e-11 Score=101.50 Aligned_cols=108 Identities=23% Similarity=0.333 Sum_probs=76.1
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|.+||||+|+|+|| .+|+|++++|+||++|+++.|....- .++|......+. +.. .+.++..-..
T Consensus 5 ~~~vILAGG~srRm------~dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~-----~g~~vv~D~~ 69 (192)
T COG0746 5 MTGVILAGGKSRRM------RDKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRNQGR---YAE-----FGLPVVPDEL 69 (192)
T ss_pred ceEEEecCCccccc------cccccceeCCeEHHHHHHHHhcccCC-EEEEeCCCchhh---hhc-----cCCceeecCC
Confidence 67999999999999 37999999999999999999988644 555555443231 222 2444433222
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-ccC-HHHHHHHHHh
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EYP-FAEMIEFHKA 127 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~~~-l~~~~~~~~~ 127 (358)
... |....++.+++.. .. +.+++++||+.+ ..+ +..+.+...+
T Consensus 70 ~~~-GPL~Gi~~al~~~--~~-~~~~v~~~D~P~i~~~lv~~l~~~~~~ 114 (192)
T COG0746 70 PGF-GPLAGILAALRHF--GT-EWVLVLPCDMPFIPPELVERLLSAFKQ 114 (192)
T ss_pred CCC-CCHHHHHHHHHhC--CC-CeEEEEecCCCCCCHHHHHHHHHhhcc
Confidence 222 9999999999888 44 399999999943 333 4555555443
No 163
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.37 E-value=4.3e-12 Score=108.76 Aligned_cols=105 Identities=19% Similarity=0.321 Sum_probs=80.8
Q ss_pred EECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEe-ccEEccCCEECCccEEcC--------cc
Q 018327 253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVEN--------MT 322 (358)
Q Consensus 253 ~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~i~~--------~~ 322 (358)
+++.++.|++++.|.+++.||++|.|+.++.|. +++||++|.|++++.|. +++||++|.||.++.+.+ ++
T Consensus 82 ~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v 161 (231)
T TIGR03532 82 LKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPV 161 (231)
T ss_pred ccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCe
Confidence 567777888888887788888888888888887 78888888888888886 578888888888877763 35
Q ss_pred EECCCcEECCceE------Ec-CcEEccCceeccCCCCCccc
Q 018327 323 ILGEDVHVCDEIY------SN-GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 323 ~i~~~~~i~~~~~------i~-~~~v~~~~~i~~~~~~~~~~ 357 (358)
+||+++.||+++. |+ ++.+.+++.|.+++|+++++
T Consensus 162 ~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv 203 (231)
T TIGR03532 162 VIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVV 203 (231)
T ss_pred EECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEE
Confidence 5555555555544 43 66778889999999998775
No 164
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.37 E-value=2.5e-11 Score=102.14 Aligned_cols=178 Identities=15% Similarity=0.209 Sum_probs=104.5
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCC-cchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEec
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFAN-KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g-~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
+.+||||||.|+||+. ||+|+|++| +|||+|+++.+... +++++|++++ +.. . ....+....
T Consensus 9 i~~vILAgG~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~-----~~~~~v~d~ 71 (196)
T PRK00560 9 IPCVILAGGKSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKD--KKF----E-----FNAPFLLEK 71 (196)
T ss_pred ceEEEECCcccccCCC-----CceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECc--hhc----c-----cCCcEEecC
Confidence 3589999999999954 899999999 99999999999876 8999988885 111 1 122222211
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-ccC-HHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCcEEEE
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EYP-FAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGKVEKF 157 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 157 (358)
.....|....+..++... .. +.+++++||..+ +.+ ++.+.. +.+. .++....+ ++
T Consensus 72 ~~~~~gpl~gi~~~l~~~--~~-~~vlv~~~D~P~i~~~~i~~l~~---~~~~------------~~~~~~~~-~~---- 128 (196)
T PRK00560 72 ESDLFSPLFGIINAFLTL--QT-PEIFFISVDTPFVSFESIKKLCG---KENF------------SVTYAKSP-TK---- 128 (196)
T ss_pred CCCCCCcHHHHHHHHHhc--CC-CeEEEEecCcCcCCHHHHHHHHh---cCCC------------CEEEEccC-Cc----
Confidence 223346665666555444 33 489999999943 333 445422 1111 11111111 11
Q ss_pred eecCCCCCCCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeec--CeEEecCCHHHHHHHHHHH
Q 018327 158 VEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLRLY 230 (358)
Q Consensus 158 ~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~--~~~~di~t~~dy~~a~~~~ 230 (358)
..--..+++++.+..+......- ..-+..+++...+..+.++ +.+.|+|||+||.++.+.+
T Consensus 129 -----------~~Pl~al~~~~~~~~l~~~l~~~-~~~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~~ 191 (196)
T PRK00560 129 -----------EHYLISLWHQSLLNALIYALKTQ-NYRLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQIL 191 (196)
T ss_pred -----------eeeeEEEEcHHHHHHHHHHHHhC-CccHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHHH
Confidence 11112578888777664211000 0113344444444444443 4678999999998876543
No 165
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.37 E-value=5.9e-12 Score=113.58 Aligned_cols=123 Identities=17% Similarity=0.248 Sum_probs=97.1
Q ss_pred eEEecCCHHHHHHHHHHHHHhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECC
Q 018327 213 FWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMR 291 (358)
Q Consensus 213 ~~~di~t~~dy~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~ 291 (358)
.+.-++.|..-+.....++... ......+++.+.+++++.|++++.|+++++|++++.||++|+|+++|.|+ ++.||+
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~-~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~ 144 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPP-PKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGD 144 (324)
T ss_pred eEEEECCHHHHHHHHHHHhccc-ccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCC
Confidence 4566677765444333333221 12244578899999999999999999999999999999999999999997 899999
Q ss_pred CcEECCCcEEe-ccEEccCCEECCccEEcC--------------------ccEECCCcEECCceEE
Q 018327 292 GVRIKKHACIS-SSIIGWHSTVGQWARVEN--------------------MTILGEDVHVCDEIYS 336 (358)
Q Consensus 292 ~~~i~~~~~i~-~~~i~~~~~ig~~~~i~~--------------------~~~i~~~~~i~~~~~i 336 (358)
+|.|+++++|. +++||++|.|++++.|.. .++||+++.||+++++
T Consensus 145 ~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I 210 (324)
T TIGR01853 145 GSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTI 210 (324)
T ss_pred CceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEE
Confidence 99999999998 589999999999998852 4788888888888876
No 166
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.36 E-value=8.6e-12 Score=100.55 Aligned_cols=92 Identities=18% Similarity=0.115 Sum_probs=65.0
Q ss_pred ECCCCEECCCcEECCCcEECCCCEECCCcEEee----eEECCCcEECCCcEEec-----cEEccCCEECCccEEcCccEE
Q 018327 254 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR----CTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVENMTIL 324 (358)
Q Consensus 254 i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~----~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~~~~i 324 (358)
+.+++.|.++++|.+++.||++|.|++++.|.. .+||++|.|+++|.|.+ ++|++++.|+.++.+.+ ++|
T Consensus 3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~I 81 (154)
T cd04650 3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG-AKV 81 (154)
T ss_pred cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEEC-cEE
Confidence 455566666666666677777777777777763 47888888888888875 68888888888888765 777
Q ss_pred CCCcEECCceEEc-CcEEccCce
Q 018327 325 GEDVHVCDEIYSN-GGVVLPHKE 346 (358)
Q Consensus 325 ~~~~~i~~~~~i~-~~~v~~~~~ 346 (358)
|+++.|++++.+. +..+.++..
T Consensus 82 g~~~~Ig~~~~i~~~~~Ig~~~~ 104 (154)
T cd04650 82 GNYVIVGMGAILLNGAKIGDHVI 104 (154)
T ss_pred CCCCEEcCCCEEeCCCEECCCCE
Confidence 7777777777663 444444333
No 167
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.35 E-value=9.5e-12 Score=119.48 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=46.9
Q ss_pred eeEECCCcEECCCcEEeccEEccCCEECCccEEcC-------ccEECCCcEECCceE------Ec-CcEEccCceeccCC
Q 018327 286 RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------MTILGEDVHVCDEIY------SN-GGVVLPHKEIKSSI 351 (358)
Q Consensus 286 ~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~i~~~~~i~~~~~------i~-~~~v~~~~~i~~~~ 351 (358)
+++|++++.|++.+.+.+++||++|.||.++.+.+ +++||+++.||.++. |+ ++.+++++.|.+++
T Consensus 357 ~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v 436 (482)
T PRK14352 357 NATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDV 436 (482)
T ss_pred ccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCC
Confidence 34444555555555555667777788887765542 255666666555544 53 67778899999999
Q ss_pred CCCccc
Q 018327 352 LKPEIV 357 (358)
Q Consensus 352 ~~~~~~ 357 (358)
|+++++
T Consensus 437 ~~~~~~ 442 (482)
T PRK14352 437 PPGALA 442 (482)
T ss_pred CCCcEE
Confidence 998764
No 168
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=2.4e-12 Score=115.15 Aligned_cols=110 Identities=17% Similarity=0.345 Sum_probs=97.5
Q ss_pred cccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEccCCEECCccE
Q 018327 239 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWAR 317 (358)
Q Consensus 239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~ 317 (358)
-..+.+++.+.+++.||.+++||++|+|. +|.|++++.|-.++.|.+|.|+++|.||+.++++. +.+++++.||..+.
T Consensus 274 DvvI~p~v~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVE 352 (460)
T COG1207 274 DVVIEPNVILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVE 352 (460)
T ss_pred ceEEecCcEEeeeEEECCceEECCCcEEE-eeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEE
Confidence 34467888999999999999999999995 99999999999999999999999999999999997 89999999999999
Q ss_pred EcCccEECCCcEECCceEEcCcEEccCceeccC
Q 018327 318 VENMTILGEDVHVCDEIYSNGGVVLPHKEIKSS 350 (358)
Q Consensus 318 i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~ 350 (358)
+.+ +.||+++++++-+.++++.++.++.|.-+
T Consensus 353 vK~-a~ig~gsKa~HLtYlGDA~iG~~~NiGAG 384 (460)
T COG1207 353 VKK-ATIGKGSKAGHLTYLGDAEIGENVNIGAG 384 (460)
T ss_pred Eec-ccccCCccccceeeeccceecCCceeccc
Confidence 998 88888888888888888777777766543
No 169
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.35 E-value=6.9e-12 Score=99.96 Aligned_cols=109 Identities=23% Similarity=0.267 Sum_probs=78.9
Q ss_pred cEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-----cEEccCCEECCccEEcC
Q 018327 246 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-----SIIGWHSTVGQWARVEN 320 (358)
Q Consensus 246 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-----~~i~~~~~ig~~~~i~~ 320 (358)
..+.++++|.|+|.|-.++.|++++.|++++.|.... ....||.++.|+++|+|.. +.||++|+||.++.|-.
T Consensus 12 P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~--~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHG 89 (176)
T COG0663 12 PKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV--EPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHG 89 (176)
T ss_pred CCCCCceEECCCCEEEEeEEECCCCEECCceEEEccC--CceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEE
Confidence 3455667777777766666666666666666665543 4578999999999999976 58999999999998888
Q ss_pred ccEECCCcEECCceEEc-------CcEEccCceecc--CCCCCccc
Q 018327 321 MTILGEDVHVCDEIYSN-------GGVVLPHKEIKS--SILKPEIV 357 (358)
Q Consensus 321 ~~~i~~~~~i~~~~~i~-------~~~v~~~~~i~~--~~~~~~~~ 357 (358)
|.|+++|.||.++++. ++.+++++.|.. .+|++.++
T Consensus 90 -c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~ 134 (176)
T COG0663 90 -CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLV 134 (176)
T ss_pred -eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEe
Confidence 8888888888887763 345555555555 36665554
No 170
>PLN02694 serine O-acetyltransferase
Probab=99.35 E-value=5.1e-12 Score=109.50 Aligned_cols=86 Identities=22% Similarity=0.209 Sum_probs=66.4
Q ss_pred cceEECCCCEECCCcEECC--CcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECC
Q 018327 250 GNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGE 326 (358)
Q Consensus 250 ~~~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~ 326 (358)
.++.|++++.||+++.|.. +++||++|+||++|.|. +++++.. +..+..++++||++|.||.+++|.+++.||+
T Consensus 159 ~gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilggi~IGd 235 (294)
T PLN02694 159 FAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILGNVKIGE 235 (294)
T ss_pred eeEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECCCCEECC
Confidence 3567777777777777764 67788888888877775 3444432 3445567789999999999999988899999
Q ss_pred CcEECCceEEcC
Q 018327 327 DVHVCDEIYSNG 338 (358)
Q Consensus 327 ~~~i~~~~~i~~ 338 (358)
+++||++++|..
T Consensus 236 ~a~IGAgSVV~k 247 (294)
T PLN02694 236 GAKIGAGSVVLI 247 (294)
T ss_pred CCEECCCCEECC
Confidence 999999999864
No 171
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.34 E-value=1.5e-11 Score=101.64 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=25.3
Q ss_pred cEEccCCEECCccEEcCccEECCCcEECCceEEcC-------------cEEccCceeccCCCCCc
Q 018327 304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-------------GVVLPHKEIKSSILKPE 355 (358)
Q Consensus 304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-------------~~v~~~~~i~~~~~~~~ 355 (358)
+.|..+|.||.+|.+.+++.++.++.||+.+.++| +.++..+.|.+|+|+-.
T Consensus 119 ~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S~v~~DVpPy~ 183 (260)
T COG1043 119 AHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDVPPYV 183 (260)
T ss_pred eeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheeccccccccCCCCeE
Confidence 34444555555555555444444444444444432 23344455566666543
No 172
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.34 E-value=1.4e-11 Score=117.88 Aligned_cols=104 Identities=13% Similarity=0.274 Sum_probs=57.7
Q ss_pred CCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC-------ccEECCC
Q 018327 255 HESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------MTILGED 327 (358)
Q Consensus 255 ~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~-------~~~i~~~ 327 (358)
++++.|++++.|.++++||++|+|+.++.|.+++|++++.+++.+.+.+++||++|.||.++.+.+ ++.||++
T Consensus 320 g~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~ 399 (458)
T PRK14354 320 GDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDN 399 (458)
T ss_pred CCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCC
Confidence 333333344444334444444444444444444455555555555555556666666665544422 2444444
Q ss_pred cEECCc------eEEc-CcEEccCceeccCCCCCcccC
Q 018327 328 VHVCDE------IYSN-GGVVLPHKEIKSSILKPEIVM 358 (358)
Q Consensus 328 ~~i~~~------~~i~-~~~v~~~~~i~~~~~~~~~~~ 358 (358)
+.+|.+ +.|+ ++.+++++.|.+++|++++++
T Consensus 400 ~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~ 437 (458)
T PRK14354 400 AFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDALAI 437 (458)
T ss_pred cEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCEEE
Confidence 444444 4453 677899999999999998763
No 173
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.33 E-value=8.8e-12 Score=118.83 Aligned_cols=57 Identities=11% Similarity=0.198 Sum_probs=35.1
Q ss_pred EeccEEccCCEECCccEEc-------CccEECCCcEECCc------eEEc-CcEEccCceeccCCCCCccc
Q 018327 301 ISSSIIGWHSTVGQWARVE-------NMTILGEDVHVCDE------IYSN-GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 301 i~~~~i~~~~~ig~~~~i~-------~~~~i~~~~~i~~~------~~i~-~~~v~~~~~i~~~~~~~~~~ 357 (358)
+.+++||++|.||.++.+. .+++||+++.||.+ +.|+ ++.+++++.|.+++|+++++
T Consensus 356 ~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~ 426 (448)
T PRK14357 356 LGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLA 426 (448)
T ss_pred ccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEE
Confidence 3344566666666554332 12445555554444 4553 67778888999999998775
No 174
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.32 E-value=1.2e-11 Score=118.35 Aligned_cols=79 Identities=18% Similarity=0.347 Sum_probs=63.8
Q ss_pred ccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEccCCEECCccEE
Q 018327 240 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWARV 318 (358)
Q Consensus 240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i 318 (358)
..+.+++.|.+++.|++++.|+++|+| .+++|+++|.|++++.|.+++|++++.|++++.+.. ++|++++.|+.++.|
T Consensus 277 ~~I~~~~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i 355 (481)
T PRK14358 277 VTIEPGVLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET 355 (481)
T ss_pred CEEeCCcEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence 345667777777778888888888888 478899999999999998889999999999988874 788888888886664
Q ss_pred c
Q 018327 319 E 319 (358)
Q Consensus 319 ~ 319 (358)
.
T Consensus 356 ~ 356 (481)
T PRK14358 356 K 356 (481)
T ss_pred C
Confidence 3
No 175
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.31 E-value=1.9e-11 Score=99.27 Aligned_cols=87 Identities=22% Similarity=0.333 Sum_probs=57.8
Q ss_pred EEecceEECCCCEECCCcEECC--CcEECCCCEECCCcEEeeeEECCCcEECCC---cEEeccEEccCCEECCccEEcCc
Q 018327 247 NIVGNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKKH---ACISSSIIGWHSTVGQWARVENM 321 (358)
Q Consensus 247 ~i~~~~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~---~~i~~~~i~~~~~ig~~~~i~~~ 321 (358)
.+..++.|++++.|++++.|.. +++|+++|+||++|.| +++|+|+.. .....++||++|+||++++|.++
T Consensus 57 ~~~~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I-----~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~ 131 (162)
T TIGR01172 57 RVLTGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTI-----YHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGN 131 (162)
T ss_pred heeeCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccccCCcCCEECCCcEEcCCCEEECC
Confidence 3444566666666666666643 3566666666666655 333444322 11334689999999999999998
Q ss_pred cEECCCcEECCceEEcC
Q 018327 322 TILGEDVHVCDEIYSNG 338 (358)
Q Consensus 322 ~~i~~~~~i~~~~~i~~ 338 (358)
++||+++.|++++++..
T Consensus 132 v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 132 IEVGENAKIGANSVVLK 148 (162)
T ss_pred cEECCCCEECCCCEECC
Confidence 99999999998887764
No 176
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.31 E-value=9.9e-11 Score=97.94 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=64.2
Q ss_pred cceEECCCCEECCCcEE----CCCcEECCCCEECCCcEEe---eeEECCCcEECCCcEEec-------------------
Q 018327 250 GNVLVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACISS------------------- 303 (358)
Q Consensus 250 ~~~~i~~~~~i~~~~~i----~~~~~ig~~~~ig~~~~i~---~~~i~~~~~i~~~~~i~~------------------- 303 (358)
.+..+|+++.++.++.+ .+...||++|.|++++.|. ++.||++|.|++++.|.+
T Consensus 42 ~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~ 121 (192)
T PRK09677 42 GSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPP 121 (192)
T ss_pred CeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccCh
Confidence 45556777777777766 3467788888888888876 578888888888887764
Q ss_pred ---------cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327 304 ---------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 338 (358)
Q Consensus 304 ---------~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 338 (358)
+.|+++|+||.++.|.+++.||+++.|++++.+..
T Consensus 122 ~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~ 165 (192)
T PRK09677 122 DMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTK 165 (192)
T ss_pred hhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECc
Confidence 35677777777777777777777777777777654
No 177
>PRK10502 putative acyl transferase; Provisional
Probab=99.30 E-value=2.1e-11 Score=101.08 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=47.6
Q ss_pred CcEECCCCEECCCcEEe---eeEECCCcEECCCcEEe----------------ccEEccCCEECCccEEcCccEECCCcE
Q 018327 269 DVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACIS----------------SSIIGWHSTVGQWARVENMTILGEDVH 329 (358)
Q Consensus 269 ~~~ig~~~~ig~~~~i~---~~~i~~~~~i~~~~~i~----------------~~~i~~~~~ig~~~~i~~~~~i~~~~~ 329 (358)
+..||++|.|++++.|. .+.||++|.|++++.|. ...||++|+||.++.|.+++.||++++
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~v 150 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAV 150 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCE
Confidence 45555666666666554 35667777777666663 246788888888888877788888887
Q ss_pred ECCceEEcC
Q 018327 330 VCDEIYSNG 338 (358)
Q Consensus 330 i~~~~~i~~ 338 (358)
|++++.+.+
T Consensus 151 Iga~svV~~ 159 (182)
T PRK10502 151 VGARSSVFK 159 (182)
T ss_pred ECCCCEEec
Confidence 777777643
No 178
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.30 E-value=5.7e-11 Score=102.90 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=64.9
Q ss_pred cCCcEEecceEECCCCEECCCcEECCCcEECCCCE-ECCCcE---Ee-eeEECCCcEECCCcEEec---------cEEcc
Q 018327 243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCV-VESGVR---LS-RCTVMRGVRIKKHACISS---------SIIGW 308 (358)
Q Consensus 243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~-ig~~~~---i~-~~~i~~~~~i~~~~~i~~---------~~i~~ 308 (358)
+.++.|.+.++|.+++.+|+|++|.++++|+.++. +|++++ |. .++|+++|.||.+|+|.. +.||+
T Consensus 176 p~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IGe 255 (341)
T TIGR03536 176 PKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVGE 255 (341)
T ss_pred cCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEECC
Confidence 56666666666667777777776666666666666 565555 55 566666777666666633 35777
Q ss_pred CCEECCccEEcCccEECCCcEECCceEEc
Q 018327 309 HSTVGQWARVENMTILGEDVHVCDEIYSN 337 (358)
Q Consensus 309 ~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 337 (358)
+|.||.++.| +..||++|+||+|+++.
T Consensus 256 ~~lIGagA~I--GI~IGd~~iIGAGavVt 282 (341)
T TIGR03536 256 GCLLGANAGI--GIPLGDRCTVEAGLYIT 282 (341)
T ss_pred CcEECCCCEE--eeEECCCCEECCCCEEe
Confidence 8888888887 58888888888888774
No 179
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.28 E-value=9.8e-12 Score=100.20 Aligned_cols=86 Identities=20% Similarity=0.308 Sum_probs=65.7
Q ss_pred EecceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEeeeEECCCcEECCCcE---EeccEEccCCEECCccEEcCcc
Q 018327 248 IVGNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMT 322 (358)
Q Consensus 248 i~~~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~ig~~~~i~~~~ 322 (358)
+...+.|+|+|+||++.+|. .+.+||+.+.||++|.| .++|+||.... -+.-.||+++.||++++|.++.
T Consensus 64 ~~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I-----~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I 138 (194)
T COG1045 64 FLFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTI-----YHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNI 138 (194)
T ss_pred hhcceeeCCCCeECCceEEcCCceEEEcceeEECCCeEE-----EcceEecCCCCcCCCCCCccCCCeEECCCCEEEcce
Confidence 34567777888888887776 35678888888887777 44555544222 2336999999999999999999
Q ss_pred EECCCcEECCceEEcC
Q 018327 323 ILGEDVHVCDEIYSNG 338 (358)
Q Consensus 323 ~i~~~~~i~~~~~i~~ 338 (358)
.||++++||+++++..
T Consensus 139 ~IGd~akIGA~sVVlk 154 (194)
T COG1045 139 EIGDNAKIGAGSVVLK 154 (194)
T ss_pred EECCCCEECCCceEcc
Confidence 9999999999999864
No 180
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.27 E-value=4.1e-11 Score=85.43 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=53.8
Q ss_pred ECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcC-cEEccCceec
Q 018327 272 VGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG-GVVLPHKEIK 348 (358)
Q Consensus 272 ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~-~~v~~~~~i~ 348 (358)
+++++.|++++.|. +++|+++|.|+++|.|.++++++++.|++++.+.+ +++++++.|++++.+.+ ..++++..|+
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~-sii~~~~~v~~~~~~~~~~~ig~~~~i~ 79 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKS-SIVGWNSTVGRWTRLENVTVLGDDVTIK 79 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeC-CEEeCCCEECCCcEEecCEEECCceEEC
Confidence 34555555555554 56667778888888888888888888888888877 78888888888877754 5556655543
No 181
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.27 E-value=6.8e-11 Score=98.86 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=38.1
Q ss_pred eEECCCcEECCCcEEec-------------------cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327 287 CTVMRGVRIKKHACISS-------------------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 338 (358)
Q Consensus 287 ~~i~~~~~i~~~~~i~~-------------------~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 338 (358)
..||++|.|+++|.|.. .+||++|+||.++.|.+++.||++++|++++++..
T Consensus 96 I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~k 166 (203)
T PRK09527 96 VTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTK 166 (203)
T ss_pred EEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 45666666666666641 46888888888888888888888888888887764
No 182
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.27 E-value=2.1e-11 Score=102.91 Aligned_cols=100 Identities=17% Similarity=0.277 Sum_probs=87.6
Q ss_pred ccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEccC
Q 018327 240 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWH 309 (358)
Q Consensus 240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~ 309 (358)
.++.|++.++-.++|++++.+.++++|.-|+.++.+|.|..++.++ -.+||.||.||.++.|.+ .+|+++
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igdn 188 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDN 188 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCc
Confidence 5577888888889999999888888888889999999999988888 578999999999998866 379999
Q ss_pred CEECCccEEcCccEECCCcEECCceEEcCc
Q 018327 310 STVGQWARVENMTILGEDVHVCDEIYSNGG 339 (358)
Q Consensus 310 ~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~ 339 (358)
|.||.|+.+..|+++|++|+|++|++|..+
T Consensus 189 cliGAns~~veGV~vGdg~VV~aGv~I~~~ 218 (271)
T COG2171 189 CLIGANSEVVEGVIVGDGCVVAAGVFITQD 218 (271)
T ss_pred cEeccccceEeeeEeCCCcEEecceEEeCC
Confidence 999999988888999999999999998643
No 183
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.26 E-value=5.3e-11 Score=88.45 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=65.3
Q ss_pred cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327 241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN 320 (358)
Q Consensus 241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 320 (358)
.+.+++.+.++++|++++.|++++.|.+++.||++|+||. .|.+|+|++++.|++++.|.+++|++++.||+++...+
T Consensus 19 ~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 19 VIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNSD 96 (101)
T ss_pred EECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCceecc
Confidence 3556677777888888888888888887888888888875 56799999999999999999999999999999988775
No 184
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.26 E-value=4.3e-11 Score=111.63 Aligned_cols=80 Identities=21% Similarity=0.352 Sum_probs=69.7
Q ss_pred CEECCCcEEC---CCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCc----cEECCCcEE
Q 018327 258 AQIGEGCLIG---PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM----TILGEDVHV 330 (358)
Q Consensus 258 ~~i~~~~~i~---~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~----~~i~~~~~i 330 (358)
+.|+++|.|. .+|+||++|.||++|+|.+|+|+++|.|+++|+|.+|+|++++.|+.++.+.++ .+||++++|
T Consensus 294 ~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~ 373 (380)
T PRK05293 294 SLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEVI 373 (380)
T ss_pred CEECCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCCC
Confidence 3444444443 379999999999999999999999999999999999999999999999999886 789999999
Q ss_pred CCceEEc
Q 018327 331 CDEIYSN 337 (358)
Q Consensus 331 ~~~~~i~ 337 (358)
+++++++
T Consensus 374 ~~~~~~~ 380 (380)
T PRK05293 374 GVGTVIG 380 (380)
T ss_pred CCCcEeC
Confidence 8887763
No 185
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.26 E-value=6.9e-11 Score=97.61 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=54.9
Q ss_pred CcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEe-------------------ccE
Q 018327 245 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-------------------SSI 305 (358)
Q Consensus 245 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~-------------------~~~ 305 (358)
++.+.++..+ .+|.++.|++++.|+.+|+|++.+.| .||++|.|++++.|. .+.
T Consensus 59 ~~~i~~~~~~----~~g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~ 131 (183)
T PRK10092 59 EAYIEPTFRC----DYGYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVT 131 (183)
T ss_pred CEEEeCCEEE----eecCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeE
Confidence 4445554433 34566666666666666666666544 677777777777774 245
Q ss_pred EccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327 306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 338 (358)
Q Consensus 306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 338 (358)
||++|+||.++.|.+++.||++++|++++++..
T Consensus 132 IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~ 164 (183)
T PRK10092 132 IGNNVWIGGRAVINPGVTIGDNVVVASGAVVTK 164 (183)
T ss_pred ECCCcEECCCCEECCCCEECCCCEECCCCEEcc
Confidence 666777777776666666666666666666643
No 186
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.25 E-value=6.3e-11 Score=102.14 Aligned_cols=93 Identities=19% Similarity=0.248 Sum_probs=78.4
Q ss_pred ccccCCcEEecceEECCCCEECCCcEECCCc-EECCCCEECCCcEEe-eeEECCCcEECCCcEEec---------cEEcc
Q 018327 240 LKLATGANIVGNVLVHESAQIGEGCLIGPDV-AVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGW 308 (358)
Q Consensus 240 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~-~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~ 308 (358)
.++.+++.+.-.+++++++.|.++++|..++ .||++ .| +++|. +|+||++|.|+.++.|.+ +.||+
T Consensus 154 VRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe 230 (319)
T TIGR03535 154 VRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGE 230 (319)
T ss_pred cEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECC
Confidence 3456777778888888888888888888888 68885 66 47788 799999999999999555 68999
Q ss_pred CCEECCccEEcCccEECCCcEECCceEEc
Q 018327 309 HSTVGQWARVENMTILGEDVHVCDEIYSN 337 (358)
Q Consensus 309 ~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 337 (358)
+|.||.++.| +..||++|+||+|+++.
T Consensus 231 ~~~IGagA~I--GI~IGd~~VVGAGaVVt 257 (319)
T TIGR03535 231 RCLLGANSGL--GISLGDDCVVEAGLYVT 257 (319)
T ss_pred CcEECCCCEE--CeEECCCCEECCCCEEe
Confidence 9999999999 69999999999999885
No 187
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.25 E-value=6.2e-11 Score=88.89 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=70.6
Q ss_pred cccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327 241 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN 320 (358)
Q Consensus 241 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 320 (358)
.+.+++.+. ++.|++++.|+ ++.|. +++++++|.|++++.|.+|+|++++.|++++.+.+++|++++.|++++.+.+
T Consensus 3 ~i~~~~~i~-~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~ 79 (104)
T cd04651 3 YIGRRGEVK-NSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG 79 (104)
T ss_pred eecCCCEEE-eEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECC
Confidence 456777784 68899999998 88885 9999999999999999999999999999999999999999999999998887
Q ss_pred c
Q 018327 321 M 321 (358)
Q Consensus 321 ~ 321 (358)
.
T Consensus 80 ~ 80 (104)
T cd04651 80 D 80 (104)
T ss_pred C
Confidence 4
No 188
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.25 E-value=1e-10 Score=101.53 Aligned_cols=89 Identities=19% Similarity=0.211 Sum_probs=41.1
Q ss_pred ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECC--------CcEECCCcEEec-cEEccCCE
Q 018327 242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMR--------GVRIKKHACISS-SIIGWHST 311 (358)
Q Consensus 242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~--------~~~i~~~~~i~~-~~i~~~~~ 311 (358)
+.+++.+. +.+++.++.|+++++|..++.||++|.||++|.|. ++.|+. ++.|+++|.|.. +.|.+++.
T Consensus 118 Ig~gavI~-p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~ 196 (272)
T PRK11830 118 IAPNVVLM-PSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVI 196 (272)
T ss_pred ECCCcEEE-EEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCE
Confidence 34444444 23344444555555555555555555555555554 232221 234444444433 34444445
Q ss_pred ECCccEEcCccEECCCcEEC
Q 018327 312 VGQWARVENMTILGEDVHVC 331 (358)
Q Consensus 312 ig~~~~i~~~~~i~~~~~i~ 331 (358)
||+++.|..+++|+.++.|+
T Consensus 197 IGdgavIgag~vV~~gt~I~ 216 (272)
T PRK11830 197 VEEGSVLGMGVFLGQSTKIY 216 (272)
T ss_pred ECCCCEEcCCCEEcCCeEEC
Confidence 55555555555555555555
No 189
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.25 E-value=2.3e-10 Score=103.76 Aligned_cols=108 Identities=15% Similarity=0.204 Sum_probs=76.5
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
+.+||||||+|+||+ .||+|+|+.|+||++|+++.+... +++++|++++.. . .+.. ...+++... .
T Consensus 161 i~~IILAGGkSsRMG-----~dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~~--~-~~~~----~~~v~~I~D-~ 226 (346)
T PRK14500 161 LYGLVLTGGKSRRMG-----KDKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPSQ--W-QGTP----LENLPTLPD-R 226 (346)
T ss_pred ceEEEEeccccccCC-----CCcccceeCCccHHHHHHHHHHhh-CCEEEEEeCchH--h-hhcc----ccCCeEEeC-C
Confidence 358999999999995 399999999999999999988764 888988876431 1 1111 112333222 2
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCee-eccC-HHHHHHHH
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYP-FAEMIEFH 125 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i-~~~~-l~~~~~~~ 125 (358)
....|...+++.++... ..+ .++++.||+. .+.+ +..+++.+
T Consensus 227 ~~~~GPlagI~aaL~~~--~~~-~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 227 GESVGPISGILTALQSY--PGV-NWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCCCChHHHHHHHHHhC--CCC-CEEEEECCcCCCCHHHHHHHHHhh
Confidence 33469999999999876 333 7899999994 3333 66766654
No 190
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.24 E-value=2.3e-10 Score=105.73 Aligned_cols=107 Identities=20% Similarity=0.361 Sum_probs=75.4
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE 80 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~ 80 (358)
|.+||||||+|+||+. +|+|+|++|+|||+|+++.+... +++++|+++.... . .+.. +++.+... .
T Consensus 175 i~~iILAGG~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~~--~-~~~~----~~v~~i~d-~ 240 (369)
T PRK14490 175 LSGLVLAGGRSSRMGS-----DKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQA--E-QYRS----FGIPLITD-S 240 (369)
T ss_pred ceEEEEcCCccccCCC-----CcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCchh--h-HHhh----cCCcEEeC-C
Confidence 3689999999999953 89999999999999999999764 7888887765321 1 1221 24555432 2
Q ss_pred CCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-cc-CHHHHHHH
Q 018327 81 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EY-PFAEMIEF 124 (358)
Q Consensus 81 ~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~~-~l~~~~~~ 124 (358)
....|...++..+.+.. .. +.++++.||+.+ .. .++.+++.
T Consensus 241 ~~~~Gpl~gi~~al~~~--~~-~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 241 YLDIGPLGGLLSAQRHH--PD-AAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred CCCCCcHHHHHHHHHhC--CC-CcEEEEeCCcCCCCHHHHHHHHHh
Confidence 23457778888887665 33 389999999943 32 35666654
No 191
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=99.24 E-value=1.2e-11 Score=108.33 Aligned_cols=166 Identities=18% Similarity=0.219 Sum_probs=112.9
Q ss_pred eEEEEecCCccccCcCCCCCCCcccccC---CcchHHHHHHHHHHC--------CCCEEEEEeccChHHHHHHHHhhhhc
Q 018327 2 KALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV--------GVTEVVLAINYQPEVMLNFLKEFEAK 70 (358)
Q Consensus 2 ~avIla~G~g~rl~~~t~~~pK~llpi~---g~pli~~~l~~l~~~--------gi~~i~vv~~~~~~~i~~~l~~~~~~ 70 (358)
-+++||||.|+||+. +.||+|+|++ |+|+|++.++++.+. ++..+++...+.++++++|+++....
T Consensus 2 a~viLaGG~GtRLg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~ 78 (266)
T cd04180 2 AVVLLAGGLGTRLGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQK 78 (266)
T ss_pred EEEEECCCCccccCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCC
Confidence 378999999999964 8999999999 999999999999862 36666666666778899999985412
Q ss_pred cCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe---------cCCCC
Q 018327 71 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV---------DEPSK 141 (358)
Q Consensus 71 ~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~ 141 (358)
.+..+.+.....|..+.++.....+. ...+.....+||.+.......+++.|.+++.....+. .+|..
T Consensus 79 ~~~v~~f~Q~~~P~~~~~~~~~~~~~---~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~ 155 (266)
T cd04180 79 NSYVITFMQGKLPLKNDDDARDPHNK---TKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLF 155 (266)
T ss_pred CCceEEEEeCCceEEeCCCCcccCCC---CceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHH
Confidence 23333344444455555544321111 1112556778888887777789999988877644443 46777
Q ss_pred eeeEEEcCCCCcEEEEeecCCCCCCCeEEEEEEEECh
Q 018327 142 YGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 178 (358)
Q Consensus 142 ~~~~~~d~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~ 178 (358)
+|++..+.. .....+.+|+... ...|+.+...
T Consensus 156 lG~~~~~~~-~~~~kvv~K~~~d----~k~G~~~~~~ 187 (266)
T cd04180 156 IGIAIQNRK-AINQKVVPKTRNE----ESGGYRIANI 187 (266)
T ss_pred HHHHHHcCC-CEEEEEEECCCCC----CeEEEEEEec
Confidence 787776654 6777888886532 3456655443
No 192
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.23 E-value=9.5e-11 Score=87.58 Aligned_cols=82 Identities=20% Similarity=0.370 Sum_probs=59.9
Q ss_pred eEECCCCEECCCcEECC--CcEECCCCEECCCcEEeeeEECCCcEECCCcE---EeccEEccCCEECCccEEcCccEECC
Q 018327 252 VLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMTILGE 326 (358)
Q Consensus 252 ~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~ig~~~~i~~~~~i~~ 326 (358)
+.|++++.|++++.|.. +++|++++.||++|.| ++++.|++++. +.+++|++++.|+.++.+.+++.|++
T Consensus 3 ~~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~ 77 (101)
T cd03354 3 IDIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGD 77 (101)
T ss_pred eEeCCCCEECCCEEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECC
Confidence 45556666666666653 4456666666666554 66666666664 66789999999999999999899999
Q ss_pred CcEECCceEEcC
Q 018327 327 DVHVCDEIYSNG 338 (358)
Q Consensus 327 ~~~i~~~~~i~~ 338 (358)
++.|++++.+..
T Consensus 78 ~~~i~~~~~i~~ 89 (101)
T cd03354 78 NVKIGANAVVTK 89 (101)
T ss_pred CCEECCCCEECc
Confidence 999988888865
No 193
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=2.9e-10 Score=92.69 Aligned_cols=202 Identities=19% Similarity=0.207 Sum_probs=130.1
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEecc-
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQE- 80 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~- 80 (358)
|+|+|.|.++|... |-+.+++|+|||.|+|+.+..++ +++|+|-+.. +++.+.-.+ +|..+.+...
T Consensus 6 AiIpAR~gSKgI~~------KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs--~~Il~~A~~----ygak~~~~Rp~ 73 (228)
T COG1083 6 AIIPARGGSKGIKN------KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDS--EEILEEAKK----YGAKVFLKRPK 73 (228)
T ss_pred EEEeccCCCCcCCc------cchHHhCCcchHHHHHHHHhcCCccceEEEcCCc--HHHHHHHHH----hCccccccCCh
Confidence 89999999999855 99999999999999999999999 7777665543 556555444 3555532221
Q ss_pred ---CCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHHHhcCCeeEEEecCC--CCeeeEEEcCCCCc
Q 018327 81 ---TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVDEP--SKYGVVVMEESTGK 153 (358)
Q Consensus 81 ---~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~ 153 (358)
...+.+.+++.++.+..+.. ++.++++.+-. ....++++..+.+.+++.+..+.+... ..|--.. +.+ |+
T Consensus 74 ~LA~D~ast~~~~lh~le~~~~~-~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f~-~~~-~~ 150 (228)
T COG1083 74 ELASDRASTIDAALHALESFNID-EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFS-LNN-GE 150 (228)
T ss_pred hhccCchhHHHHHHHHHHHhccc-cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHHHH-hcC-Cc
Confidence 11234446677888777543 32467776666 556679999999998886665555111 1111111 222 67
Q ss_pred EEEEeecCC--CCC-----CCeEEEEEEEEChhhhhhccCCCCCcccchHHHHHhcCceEEEeec-CeEEecCCHHHHHH
Q 018327 154 VEKFVEKPK--LFV-----GNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRDYIT 225 (358)
Q Consensus 154 v~~~~ek~~--~~~-----~~~~~~Giy~~~~~~l~~l~~~~~~~~~d~l~~l~~~~~v~~~~~~-~~~~di~t~~dy~~ 225 (358)
+..+.+.|. .++ ....+..+|+++++.|..-. ..| ..+...|.++ ....|+|+..||..
T Consensus 151 ~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~~---~~f----------~~~~~~y~m~~~~~~DID~~~Dl~i 217 (228)
T COG1083 151 VKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALLEND---CFF----------IPNTILYEMPEDESIDIDTELDLEI 217 (228)
T ss_pred eeecccCCccccccccchhhhhhcCcEEEehHHHHhhcC---cee----------cCCceEEEcCcccccccccHHhHHH
Confidence 777766552 222 22356788999988876521 111 1233344443 35889999999999
Q ss_pred HHHHHHH
Q 018327 226 GLRLYLD 232 (358)
Q Consensus 226 a~~~~l~ 232 (358)
+...+..
T Consensus 218 ae~l~~~ 224 (228)
T COG1083 218 AENLIFL 224 (228)
T ss_pred HHHHhhh
Confidence 9877654
No 194
>PLN02357 serine acetyltransferase
Probab=99.21 E-value=5.4e-11 Score=106.10 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=57.1
Q ss_pred ceEECCCCEECCCcEECC--CcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCC
Q 018327 251 NVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGED 327 (358)
Q Consensus 251 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~ 327 (358)
.+.|++++.||+|+.|.. +++||++|+||++|.|. +++|+.. +......+++||++|.||.+++|.+++.||++
T Consensus 226 ~vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~IlggV~IGdg 302 (360)
T PLN02357 226 AVDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILGNITIGEG 302 (360)
T ss_pred ceeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEECCeEECCC
Confidence 356666666666666653 46666666666666664 3333332 11122345788889999999888888889999
Q ss_pred cEECCceEEcC
Q 018327 328 VHVCDEIYSNG 338 (358)
Q Consensus 328 ~~i~~~~~i~~ 338 (358)
++||++++|..
T Consensus 303 a~IGAgSVV~~ 313 (360)
T PLN02357 303 AKIGAGSVVLK 313 (360)
T ss_pred CEECCCCEECc
Confidence 99988888764
No 195
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.21 E-value=1.3e-10 Score=100.74 Aligned_cols=31 Identities=3% Similarity=0.069 Sum_probs=14.2
Q ss_pred cEEccCCEECCccEEcCccEECCCcEECCceEE
Q 018327 304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS 336 (358)
Q Consensus 304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 336 (358)
|.||.++.| +..|+.+|+||.++.|-+++.|
T Consensus 257 ~lIGagA~I--GI~IGd~~iIGAGavVtagTkI 287 (341)
T TIGR03536 257 CLLGANAGI--GIPLGDRCTVEAGLYITAGTKV 287 (341)
T ss_pred cEECCCCEE--eeEECCCCEECCCCEEeCCcEE
Confidence 344444444 4444444444444444444444
No 196
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.20 E-value=1.9e-10 Score=87.27 Aligned_cols=86 Identities=15% Similarity=0.244 Sum_probs=66.2
Q ss_pred eEECCCCEECCCcEECC--CcEECCCCEECCCcEEeee---EECCCcEECCCcEEeccEEccCCEECCccEEcCccEECC
Q 018327 252 VLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRC---TVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGE 326 (358)
Q Consensus 252 ~~i~~~~~i~~~~~i~~--~~~ig~~~~ig~~~~i~~~---~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~ 326 (358)
..|++++.|++++.|.. ++.||++|.|+++|.|.++ .++.++.+.......+++|+++|.|+.++.+.+++.|++
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~ 81 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGD 81 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECC
Confidence 56788888888888876 7889999999999988743 344444444445566678888888888888887788888
Q ss_pred CcEECCceEEc
Q 018327 327 DVHVCDEIYSN 337 (358)
Q Consensus 327 ~~~i~~~~~i~ 337 (358)
++.+++++.+.
T Consensus 82 ~~~i~~~~~v~ 92 (109)
T cd04647 82 GAVVGAGSVVT 92 (109)
T ss_pred CCEECCCCEEe
Confidence 88888888877
No 197
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.19 E-value=3.2e-10 Score=93.04 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=26.5
Q ss_pred cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327 304 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 338 (358)
Q Consensus 304 ~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 338 (358)
+.||++|+||.++.|.+++.||++++||+++++.+
T Consensus 119 v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~ 153 (169)
T cd03357 119 ITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTK 153 (169)
T ss_pred cEeCCCEEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 57777777777777777777777777777777765
No 198
>PRK10191 putative acyl transferase; Provisional
Probab=99.19 E-value=1.5e-10 Score=91.55 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=49.1
Q ss_pred EecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEE--eccEEccCCEECCccEEcCccEEC
Q 018327 248 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI--SSSIIGWHSTVGQWARVENMTILG 325 (358)
Q Consensus 248 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i--~~~~i~~~~~ig~~~~i~~~~~i~ 325 (358)
|.+.+.+++++.|+++ .+++|+++++||++|.| +++|+||+.+.. ..+.||++|+||+++.+.+++.||
T Consensus 44 I~~~a~Ig~~~~I~~g----~~i~I~~~~~IGd~~~I-----~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG 114 (146)
T PRK10191 44 IQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTI-----RHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIG 114 (146)
T ss_pred cCCCCEECCCeEECCC----CeEEECCCcEECCCCEE-----CCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEEC
Confidence 3334444444444442 13445555555555444 333333332222 225788888888888888888888
Q ss_pred CCcEECCceEEcCc
Q 018327 326 EDVHVCDEIYSNGG 339 (358)
Q Consensus 326 ~~~~i~~~~~i~~~ 339 (358)
+++.|++++.+.++
T Consensus 115 ~~~~Igags~V~~d 128 (146)
T PRK10191 115 NNVTVGAGSVVLDS 128 (146)
T ss_pred CCCEECCCCEECCc
Confidence 88888888887654
No 199
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.19 E-value=4e-10 Score=91.66 Aligned_cols=92 Identities=16% Similarity=0.267 Sum_probs=59.1
Q ss_pred cccCCcEEecc---eEECCCCEECCCcEECC------------CcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccE
Q 018327 241 KLATGANIVGN---VLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSI 305 (358)
Q Consensus 241 ~~~~~~~i~~~---~~i~~~~~i~~~~~i~~------------~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~ 305 (358)
.+.+++.+.++ +.||+++.|+++++|.+ ++.||+++.|++++.+.++.|++++.|++++.|..
T Consensus 29 ~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~-- 106 (161)
T cd03359 29 IIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGR-- 106 (161)
T ss_pred EEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEEcC--
Confidence 34566666654 57788888888887763 34788888888888887777777777777665543
Q ss_pred EccCCEECCccEEcCccEECCCcEECCceEEc
Q 018327 306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSN 337 (358)
Q Consensus 306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 337 (358)
++.|++++.+..++++..+++|++.+.+.
T Consensus 107 ---~~~I~~~~~i~~g~~V~~~~~i~~~~vv~ 135 (161)
T cd03359 107 ---RCIIKDCVKILDGTVVPPDTVIPPYSVVS 135 (161)
T ss_pred ---CCEECCCcEECCCCEECCCCEeCCCCEEe
Confidence 44444444444445555555555555554
No 200
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.18 E-value=1.4e-10 Score=110.14 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=60.4
Q ss_pred EECCCcEEeeeEECCCcEECCCcEEec--------cEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceec
Q 018327 277 VVESGVRLSRCTVMRGVRIKKHACISS--------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK 348 (358)
Q Consensus 277 ~ig~~~~i~~~~i~~~~~i~~~~~i~~--------~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~ 348 (358)
+||..+.|.+|+||++|.||+++.+.+ ++||++|.||.++.|.+++.||+++.||+++.+.+. +.++..+.
T Consensus 333 ~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~-v~~~~~~~ 411 (430)
T PRK14359 333 KAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKD-VPKGSLAI 411 (430)
T ss_pred cccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccc-cCCCcEEE
Confidence 555666677889999999999988863 689999999999999999999999999999999764 44555544
Q ss_pred cCCC
Q 018327 349 SSIL 352 (358)
Q Consensus 349 ~~~~ 352 (358)
+..|
T Consensus 412 ~~~~ 415 (430)
T PRK14359 412 SRAP 415 (430)
T ss_pred eccC
Confidence 4333
No 201
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.14 E-value=3.7e-10 Score=79.98 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=47.8
Q ss_pred EECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECC
Q 018327 253 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 332 (358)
Q Consensus 253 ~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~ 332 (358)
.|++++.|+++++|.+++.||++|.|++++.|.+..... ......|+++++|+.++.+.+++.|++++.|++
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~ 73 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN--------EKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGA 73 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC--------ccCCcEECCCcEECCCCEEeCCCEECCCCEECc
Confidence 455566666666665556666666666666655432221 223367777777777777777777888877777
Q ss_pred ceEE
Q 018327 333 EIYS 336 (358)
Q Consensus 333 ~~~i 336 (358)
++.+
T Consensus 74 ~s~v 77 (78)
T cd00208 74 GAVV 77 (78)
T ss_pred CcEe
Confidence 7765
No 202
>PLN02739 serine acetyltransferase
Probab=99.14 E-value=2.2e-10 Score=101.35 Aligned_cols=84 Identities=20% Similarity=0.292 Sum_probs=55.4
Q ss_pred cceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEeeeEECCCcEECCCcEE---eccEEccCCEECCccEEcCccEE
Q 018327 250 GNVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI---SSSIIGWHSTVGQWARVENMTIL 324 (358)
Q Consensus 250 ~~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i---~~~~i~~~~~ig~~~~i~~~~~i 324 (358)
-++.|++++.||+++.|. .+++||++|+||++|.| .++|+||....- ....||++|.||.+++|.+++.|
T Consensus 204 ~GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I-----~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~I 278 (355)
T PLN02739 204 FGIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSI-----LHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISI 278 (355)
T ss_pred hCcccCCCccccCceEEecCCceEECCCCEECCCCEE-----cCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEE
Confidence 345566666666666664 25566666666665555 444444422111 23688999999999999888999
Q ss_pred CCCcEECCceEEcC
Q 018327 325 GEDVHVCDEIYSNG 338 (358)
Q Consensus 325 ~~~~~i~~~~~i~~ 338 (358)
|++++||++++|..
T Consensus 279 Gd~aiIGAGSVV~k 292 (355)
T PLN02739 279 GAGAMVAAGSLVLK 292 (355)
T ss_pred CCCCEECCCCEECC
Confidence 99999999988764
No 203
>PRK10191 putative acyl transferase; Provisional
Probab=99.13 E-value=5.8e-10 Score=88.22 Aligned_cols=95 Identities=18% Similarity=0.241 Sum_probs=69.9
Q ss_pred cccccCCcEEecceEECC--CCEECCCcEECCCcEECCCCEECCCcEEe--eeEECCCcEECCCcEEec-cEEccCCEEC
Q 018327 239 SLKLATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESGVRLS--RCTVMRGVRIKKHACISS-SIIGWHSTVG 313 (358)
Q Consensus 239 ~~~~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~ig~~~~i~--~~~i~~~~~i~~~~~i~~-~~i~~~~~ig 313 (358)
...+++++.+.+++.|++ ++.|++++.|++++.|+++|+||+..... .+.||++|.|+.++.+.+ +.||+++.||
T Consensus 41 g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Ig 120 (146)
T PRK10191 41 GYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVG 120 (146)
T ss_pred CcccCCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEEC
Confidence 344677788888888888 57888888888888888888888765443 457888888888888876 7888888888
Q ss_pred CccEEcCccEECCCcEECCce
Q 018327 314 QWARVENMTILGEDVHVCDEI 334 (358)
Q Consensus 314 ~~~~i~~~~~i~~~~~i~~~~ 334 (358)
+++.+.+ .+-.....+|..+
T Consensus 121 ags~V~~-dv~~~~~v~G~pA 140 (146)
T PRK10191 121 AGSVVLD-SVPDNALVVGEKA 140 (146)
T ss_pred CCCEECC-ccCCCcEEEccCc
Confidence 8877777 4444444444444
No 204
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.12 E-value=5e-10 Score=91.00 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=33.8
Q ss_pred CcEEecceEECCCCEECC--CcEECCCcEECCCCEECCCcEEee---------eEECCCcEECCCcEEec-cEEccCCEE
Q 018327 245 GANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWHSTV 312 (358)
Q Consensus 245 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~ig~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~~~i 312 (358)
+..+.+.+.|++++.|+. +++|++++.||++|.|+.++.|+. ++|+++|.|+.++.|.+ ++||++|.|
T Consensus 61 ~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~I 140 (162)
T TIGR01172 61 GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKI 140 (162)
T ss_pred CeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEE
Confidence 344444444444444432 244444444444444444444441 24455555555444443 344444444
Q ss_pred CCccEEcC
Q 018327 313 GQWARVEN 320 (358)
Q Consensus 313 g~~~~i~~ 320 (358)
|+++.+.+
T Consensus 141 ga~s~V~~ 148 (162)
T TIGR01172 141 GANSVVLK 148 (162)
T ss_pred CCCCEECC
Confidence 44444433
No 205
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.11 E-value=3.6e-10 Score=106.72 Aligned_cols=79 Identities=10% Similarity=0.277 Sum_probs=68.9
Q ss_pred CCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEcc-------------------CCEECCcc
Q 018327 256 ESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW-------------------HSTVGQWA 316 (358)
Q Consensus 256 ~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~-------------------~~~ig~~~ 316 (358)
+.+.+ .++.+. ++.||++|.| +++.|.+|+||++|.|+++|.|.+|+|++ ++.||++|
T Consensus 297 ~~a~~-~~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~ 373 (429)
T PRK02862 297 PPSKL-LDATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGT 373 (429)
T ss_pred CCccc-cccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCC
Confidence 33444 355664 7999999999 89999999999999999999999999976 69999999
Q ss_pred EEcCccEECCCcEECCceEEcC
Q 018327 317 RVENMTILGEDVHVCDEIYSNG 338 (358)
Q Consensus 317 ~i~~~~~i~~~~~i~~~~~i~~ 338 (358)
.|.+ ++|++++.||+++.+.+
T Consensus 374 ~i~~-~ii~~~~~i~~~~~~~~ 394 (429)
T PRK02862 374 TIKR-AIIDKNARIGNNVRIVN 394 (429)
T ss_pred EEEE-EEECCCcEECCCcEEec
Confidence 9988 99999999999999953
No 206
>PRK10502 putative acyl transferase; Provisional
Probab=99.10 E-value=6.7e-10 Score=92.10 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEECCCCEECCCcEEC--CCcEECCCCEECCCcEEe
Q 018327 252 VLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLS 285 (358)
Q Consensus 252 ~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~ 285 (358)
..||+++.|++++.|. .++.||++|.|++++.|.
T Consensus 72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~ 107 (182)
T PRK10502 72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLC 107 (182)
T ss_pred EEECCCeEECCCceecccCceEECCCcEECCCeEEE
Confidence 4456666666666664 245666666666666653
No 207
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.09 E-value=6.1e-10 Score=96.77 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=44.3
Q ss_pred ccCCcEEecceEECCCCEECC--CcEECCCcEECCCCEECCCcEEee---------eEECCCcEECCCcEEec-cEEccC
Q 018327 242 LATGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWH 309 (358)
Q Consensus 242 ~~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~ig~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~ 309 (358)
+..+..|++.+.||+++.|+. +++|++++.||++|.|..++.|++ ..|+++|.||.+|.|.+ +.||++
T Consensus 138 ~~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~ 217 (273)
T PRK11132 138 VAFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRG 217 (273)
T ss_pred eeeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCC
Confidence 345555666666666666653 456666677777777777766652 35555666655555544 344444
Q ss_pred CEECCccEEc
Q 018327 310 STVGQWARVE 319 (358)
Q Consensus 310 ~~ig~~~~i~ 319 (358)
|.||+++.+.
T Consensus 218 a~IGAgSvV~ 227 (273)
T PRK11132 218 AKIGAGSVVL 227 (273)
T ss_pred CEECCCCEEC
Confidence 4444444443
No 208
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.08 E-value=9.2e-10 Score=104.23 Aligned_cols=79 Identities=18% Similarity=0.347 Sum_probs=66.7
Q ss_pred CCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEcc----------------C---CEECCc
Q 018327 255 HESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW----------------H---STVGQW 315 (358)
Q Consensus 255 ~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~----------------~---~~ig~~ 315 (358)
-+++.+ .++.+. +|+|+++|+|+ +|.|.+|+|+++|.|+++|+|.+++++. + +.||++
T Consensus 303 ~~~~~~-~~~~i~-~s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~ 379 (436)
T PLN02241 303 LPPSKI-EDCRIT-DSIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGEN 379 (436)
T ss_pred CCCcEe-cCCeEE-EeEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCC
Confidence 355666 466675 49999999999 9999999999999999999999987755 3 389999
Q ss_pred cEEcCccEECCCcEECCceEEc
Q 018327 316 ARVENMTILGEDVHVCDEIYSN 337 (358)
Q Consensus 316 ~~i~~~~~i~~~~~i~~~~~i~ 337 (358)
+.+.+ ++|++++.||+++.+.
T Consensus 380 ~~i~~-~vI~~~v~Ig~~~~i~ 400 (436)
T PLN02241 380 TKIRN-AIIDKNARIGKNVVII 400 (436)
T ss_pred CEEcc-eEecCCCEECCCcEEe
Confidence 99986 8999999999988885
No 209
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.08 E-value=2.2e-09 Score=80.96 Aligned_cols=87 Identities=23% Similarity=0.240 Sum_probs=55.5
Q ss_pred ceEECCCCEECCCcEEC--CCcEECCCCEECCCcEEeeeEECCCcEECCCcEEe-ccEEccCCEECCccEEcCccEECCC
Q 018327 251 NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVENMTILGED 327 (358)
Q Consensus 251 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~~~~i~~~~~i~~~ 327 (358)
+..||+++.|+++++|. +...||++|.|++++.|... .++........+. ...|+++|+||.++.|.+++.||++
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~--~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~ 80 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTG--SHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEG 80 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecC--CCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCC
Confidence 45566666666666664 34666777777766666421 0111111222222 3688888888888888888888888
Q ss_pred cEECCceEEcCc
Q 018327 328 VHVCDEIYSNGG 339 (358)
Q Consensus 328 ~~i~~~~~i~~~ 339 (358)
+.|++++.+.+.
T Consensus 81 ~~i~~gs~v~~~ 92 (107)
T cd05825 81 AVVGARSVVVRD 92 (107)
T ss_pred CEECCCCEEeCc
Confidence 888888888653
No 210
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.05 E-value=5e-09 Score=87.69 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=23.6
Q ss_pred cCccEECCCcEECCceEEc-CcEEccCceeccCCCCCccc
Q 018327 319 ENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 319 ~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~~ 357 (358)
++++.||.++.|.+++.|+ ++.+++++.|.+++|+++++
T Consensus 134 g~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~ 173 (192)
T PRK09677 134 GQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVI 173 (192)
T ss_pred cCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCcEE
Confidence 3344444445555555553 56667777777788777654
No 211
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.05 E-value=2.1e-09 Score=89.99 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=6.9
Q ss_pred cEECCCCEECCCcEE
Q 018327 270 VAVGPGCVVESGVRL 284 (358)
Q Consensus 270 ~~ig~~~~ig~~~~i 284 (358)
+.||++|.|+++|.|
T Consensus 96 I~IGd~v~Ig~~v~I 110 (203)
T PRK09527 96 VTIGDNVLIAPNVTL 110 (203)
T ss_pred EEECCCCEECCCCEE
Confidence 344444444444444
No 212
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.03 E-value=2.3e-09 Score=75.81 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=42.2
Q ss_pred EECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEc---cCCEECCccEEcCccEECCCcEECCceEEc
Q 018327 271 AVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIG---WHSTVGQWARVENMTILGEDVHVCDEIYSN 337 (358)
Q Consensus 271 ~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~---~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 337 (358)
+||++|.|++++.|. +++|++++.|++++.|.+.... ..+.||+++.+..++++..+++|++++.+.
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~ 72 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIG 72 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEEC
Confidence 455555555555555 3666777777777777665432 346666666666666666666666666665
No 213
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.03 E-value=3.1e-09 Score=80.22 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=56.9
Q ss_pred CcEECCCCEECCCcEEe---eeEECCCcEECCCcEEecc----EEccCCEECCccEEcCccEECCCcEECCceEEc-CcE
Q 018327 269 DVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACISSS----IIGWHSTVGQWARVENMTILGEDVHVCDEIYSN-GGV 340 (358)
Q Consensus 269 ~~~ig~~~~ig~~~~i~---~~~i~~~~~i~~~~~i~~~----~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~-~~~ 340 (358)
+..||++|.|++++.|. ...||++|.|++++.|... .......+...+.|+++|+||.++.|..++.++ ++.
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~ 82 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAV 82 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCE
Confidence 34455555555555554 3577888888888777541 111223344556666666666666666666664 677
Q ss_pred EccCceeccCCCCCccc
Q 018327 341 VLPHKEIKSSILKPEIV 357 (358)
Q Consensus 341 v~~~~~i~~~~~~~~~~ 357 (358)
+.+++.|.+++|+++++
T Consensus 83 i~~gs~v~~~~~~~~~~ 99 (107)
T cd05825 83 VGARSVVVRDLPAWTVY 99 (107)
T ss_pred ECCCCEEeCcCCCCCEE
Confidence 77788888899988765
No 214
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2e-09 Score=98.79 Aligned_cols=89 Identities=22% Similarity=0.371 Sum_probs=68.8
Q ss_pred ECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECC-----c
Q 018327 260 IGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD-----E 333 (358)
Q Consensus 260 i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~-----~ 333 (358)
+.. +.+.++++||++|.|+.++.|. +++||++|+|++++.|.+|+|+++|.|+.++.+.+ ++||++|+||+ +
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~-sIi~~~~~ig~~~~i~d 330 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGD-SIIGENCKIGASLIIGD 330 (358)
T ss_pred ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEee-eEEcCCcEECCceeecc
Confidence 444 6667788888888888888888 78888889998889999999999999999999888 88888888885 2
Q ss_pred eEEc-CcEEccCceeccC
Q 018327 334 IYSN-GGVVLPHKEIKSS 350 (358)
Q Consensus 334 ~~i~-~~~v~~~~~i~~~ 350 (358)
+.++ ++.+.|+..+..+
T Consensus 331 ~~~g~~~~i~~g~~~~~~ 348 (358)
T COG1208 331 VVIGINSEILPGVVVGPG 348 (358)
T ss_pred eEecCceEEcCceEeCCC
Confidence 3333 4555666666544
No 215
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.02 E-value=5e-09 Score=90.55 Aligned_cols=101 Identities=17% Similarity=0.162 Sum_probs=67.5
Q ss_pred cCCcEEecceEECCCCEECCCcEECCCcEECCCC-EECCCcEEeeeEECCCcEECCCcEEec-cEEcc----C----CEE
Q 018327 243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGC-VVESGVRLSRCTVMRGVRIKKHACISS-SIIGW----H----STV 312 (358)
Q Consensus 243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~-~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~----~----~~i 312 (358)
+++..|.+...+--+|.+++|++|...++|..++ +||++ .| ++.|.++|.||+++.|.. +.|+. + +.|
T Consensus 151 p~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~I 228 (319)
T TIGR03535 151 PTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISI 228 (319)
T ss_pred CCccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE-EEEEccCCEECCCCEECCCceecceecCCCcccEEE
Confidence 5677777777777777777777777777777777 67775 44 677777777777777776 44444 4 666
Q ss_pred CCccEEcCccEECCCcEECCceEEc-CcEEccCcee
Q 018327 313 GQWARVENMTILGEDVHVCDEIYSN-GGVVLPHKEI 347 (358)
Q Consensus 313 g~~~~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i 347 (358)
|++|.|+.++.| +..||++++|+ |+.|..+..|
T Consensus 229 Ge~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v 262 (319)
T TIGR03535 229 GERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKV 262 (319)
T ss_pred CCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEE
Confidence 666666666666 56666666664 5555544443
No 216
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.01 E-value=1.6e-09 Score=101.70 Aligned_cols=71 Identities=27% Similarity=0.400 Sum_probs=65.8
Q ss_pred EecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327 248 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN 320 (358)
Q Consensus 248 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 320 (358)
+.++++|++++.|+ ++.|. +|+||++|+|+++|+|.+|+|+++|.|+++|+|.+|+|++++.|++++++..
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 45678999999998 89996 8999999999999999999999999999999999999999999999888876
No 217
>PLN02694 serine O-acetyltransferase
Probab=99.00 E-value=1.9e-09 Score=93.72 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=48.9
Q ss_pred EEecceEECCCCEECC--CcEECCCcEECCCCEECCCcEEe---------eeEECCCcEECCCcEEe-ccEEccCCEECC
Q 018327 247 NIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACIS-SSIIGWHSTVGQ 314 (358)
Q Consensus 247 ~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~ig~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~ig~ 314 (358)
.|++.+.||+++.|.. +++|+++++||++|.|..++.++ +++|+++|.||.++.|. ++.||++|.||+
T Consensus 162 dI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGA 241 (294)
T PLN02694 162 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGA 241 (294)
T ss_pred EeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEECC
Confidence 3455555555555544 56666666666666666666664 46888888888888874 467777777777
Q ss_pred ccEEcC
Q 018327 315 WARVEN 320 (358)
Q Consensus 315 ~~~i~~ 320 (358)
++.+.+
T Consensus 242 gSVV~k 247 (294)
T PLN02694 242 GSVVLI 247 (294)
T ss_pred CCEECC
Confidence 777665
No 218
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.98 E-value=3.6e-09 Score=97.67 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=27.9
Q ss_pred cEEeeeEECCCcEECCC-cEEeccEEccCCEECCccEEcC--ccEECCCcEEC
Q 018327 282 VRLSRCTVMRGVRIKKH-ACISSSIIGWHSTVGQWARVEN--MTILGEDVHVC 331 (358)
Q Consensus 282 ~~i~~~~i~~~~~i~~~-~~i~~~~i~~~~~ig~~~~i~~--~~~i~~~~~i~ 331 (358)
|.|.+|+|++++.|+.+ +++.++++++++.|++++++.. +.++|++++|+
T Consensus 300 ~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 300 AEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred eEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCceec
Confidence 33345666666666555 3556666666666666666653 24455555443
No 219
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.98 E-value=2.4e-09 Score=100.98 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=65.5
Q ss_pred ecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccE
Q 018327 249 VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTI 323 (358)
Q Consensus 249 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~ 323 (358)
..+++|+++|.| +++.|. +|+|+++|.||++|+|.+|+|+++|.|+++|+|.+|+|+++|.|++++.|+.++.
T Consensus 325 ~~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~~~ 397 (425)
T PRK00725 325 AINSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGEDPE 397 (425)
T ss_pred EEeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEECCCCC
Confidence 347899999999 788886 8999999999999999999999999999999999999999999988877765443
No 220
>PLN02357 serine acetyltransferase
Probab=98.97 E-value=4.5e-09 Score=93.95 Aligned_cols=91 Identities=20% Similarity=0.243 Sum_probs=63.2
Q ss_pred cEEecceEECCCCEECC--CcEECCCcEECCCCEECCCcEEe---------eeEECCCcEECCCcEEe-ccEEccCCEEC
Q 018327 246 ANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACIS-SSIIGWHSTVG 313 (358)
Q Consensus 246 ~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~ig~~~~i~---------~~~i~~~~~i~~~~~i~-~~~i~~~~~ig 313 (358)
..|++.+.||+++.+.. +++|+++++||++|.|+.++.|+ +++||++|.||.++.|. ++.||+++.||
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IG 306 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIG 306 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEEC
Confidence 44555555666665554 45666666666666666666664 37899999999998885 47899999999
Q ss_pred CccEEcCccEECCCcEECCceEEc
Q 018327 314 QWARVENMTILGEDVHVCDEIYSN 337 (358)
Q Consensus 314 ~~~~i~~~~~i~~~~~i~~~~~i~ 337 (358)
.++.+.+ -+-...+++|.=+.+-
T Consensus 307 AgSVV~~-dVP~~~~v~G~PArvv 329 (360)
T PLN02357 307 AGSVVLK-DVPPRTTAVGNPARLI 329 (360)
T ss_pred CCCEECc-ccCCCcEEECCCeEEE
Confidence 9998887 4555555556555553
No 221
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=2.5e-09 Score=95.91 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=59.5
Q ss_pred cceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCc
Q 018327 250 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM 321 (358)
Q Consensus 250 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~ 321 (358)
.+..++.+|.|.. .+ .||+|+.+++|+++|.|.+|+|+++|.||++|+|++++|..+|.|++|++|+..
T Consensus 295 ~nSLv~~GciI~G--~V-~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 295 SNSLVAGGCIISG--TV-ENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred eeeeeeCCeEEEe--EE-EeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 3455555555544 33 499999999999999999999999999999999999999999999999999885
No 222
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.97 E-value=3.3e-09 Score=98.25 Aligned_cols=68 Identities=24% Similarity=0.339 Sum_probs=55.8
Q ss_pred ceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327 251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN 320 (358)
Q Consensus 251 ~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 320 (358)
++.|+++|.|+++ .+. +++|+++|+|+++|+|.+|+|++++.|+++|.|.+|+||+++.|+.++.|++
T Consensus 294 ~~~ig~~~~I~~~-~v~-~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 294 DSLVSEGCIISGA-TVS-HSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CCEECCCCEECCC-EEE-ccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 3445555555544 342 8999999999999999999999999999999999999999999988887764
No 223
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.95 E-value=9.2e-09 Score=84.38 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=38.8
Q ss_pred eEECCCcEECCCcEEecc-------------EEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCceeccCCCC
Q 018327 287 CTVMRGVRIKKHACISSS-------------IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILK 353 (358)
Q Consensus 287 ~~i~~~~~i~~~~~i~~~-------------~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~~~~ 353 (358)
..||++|.|+++|.|... ..+..+.||+++.|+.+++|..+++||+ ++.+++++.|.+++|+
T Consensus 83 i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~-----~~~VgagavV~~~vp~ 157 (169)
T cd03357 83 VTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGD-----NSVIGAGSVVTKDIPA 157 (169)
T ss_pred EEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECC-----CCEECCCCEEccccCC
Confidence 466777777777777531 2334445555444444444444444444 4555557777888988
Q ss_pred Cccc
Q 018327 354 PEIV 357 (358)
Q Consensus 354 ~~~~ 357 (358)
++++
T Consensus 158 ~~vv 161 (169)
T cd03357 158 NVVA 161 (169)
T ss_pred CcEE
Confidence 8775
No 224
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.95 E-value=9.9e-09 Score=76.62 Aligned_cols=78 Identities=24% Similarity=0.272 Sum_probs=39.2
Q ss_pred cCCcEEecceEECC--CCEECCCcEECCCcEECCCCEECCCcE---EeeeEECCCcEECCCcEEec-cEEccCCEECCcc
Q 018327 243 ATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESGVR---LSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWA 316 (358)
Q Consensus 243 ~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~ig~~~~---i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~ 316 (358)
.+++.+.++++++. ++.|++++.|++++.|+.++.|+.++. +.+++|++++.|+.++.+.. +.|+++++|++++
T Consensus 6 ~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~ 85 (101)
T cd03354 6 HPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANA 85 (101)
T ss_pred CCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCC
Confidence 34444444444443 334444444444444555555554443 23455666666666666655 4555555555555
Q ss_pred EEcC
Q 018327 317 RVEN 320 (358)
Q Consensus 317 ~i~~ 320 (358)
.|.+
T Consensus 86 ~i~~ 89 (101)
T cd03354 86 VVTK 89 (101)
T ss_pred EECc
Confidence 4443
No 225
>PLN02739 serine acetyltransferase
Probab=98.95 E-value=2.9e-09 Score=94.33 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=48.5
Q ss_pred CcEEecceEECCCCEEC--CCcEECCCcEECCCCEECCCcEEe---------eeEECCCcEECCCcEEec-cEEccCCEE
Q 018327 245 GANIVGNVLVHESAQIG--EGCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACISS-SIIGWHSTV 312 (358)
Q Consensus 245 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~ig~~~~i~---------~~~i~~~~~i~~~~~i~~-~~i~~~~~i 312 (358)
+..|++.+.||+++.|. .+++|+++++||++|.|..++.|+ +..||++|.||.++.|-+ +.||+++.|
T Consensus 205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiI 284 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMV 284 (355)
T ss_pred CcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEE
Confidence 44455555666666664 366777777777777777777775 356777777777777655 566666666
Q ss_pred CCccEEcC
Q 018327 313 GQWARVEN 320 (358)
Q Consensus 313 g~~~~i~~ 320 (358)
|.++.+..
T Consensus 285 GAGSVV~k 292 (355)
T PLN02739 285 AAGSLVLK 292 (355)
T ss_pred CCCCEECC
Confidence 66655554
No 226
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.92 E-value=1.6e-08 Score=83.62 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=43.9
Q ss_pred ecceEECCCCEECCCcEECCCc--EECCCCEECCCcEEee-------------eEECCCcEECCCcEEec-cEEccCCEE
Q 018327 249 VGNVLVHESAQIGEGCLIGPDV--AVGPGCVVESGVRLSR-------------CTVMRGVRIKKHACISS-SIIGWHSTV 312 (358)
Q Consensus 249 ~~~~~i~~~~~i~~~~~i~~~~--~ig~~~~ig~~~~i~~-------------~~i~~~~~i~~~~~i~~-~~i~~~~~i 312 (358)
..++.||+++.|+.+++|...+ .||++|.|+++|.|.. ..+...+.||++|.|.. ++|.+++.|
T Consensus 71 g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~I 150 (183)
T PRK10092 71 GYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTI 150 (183)
T ss_pred cCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEE
Confidence 4566666666666666665433 6677777777666641 12233444444444432 344444444
Q ss_pred CCccEEcCccEECCCcEECCceEE
Q 018327 313 GQWARVENMTILGEDVHVCDEIYS 336 (358)
Q Consensus 313 g~~~~i~~~~~i~~~~~i~~~~~i 336 (358)
|+++.|..+++|..+ |.+++++
T Consensus 151 G~~~vIgagsvV~~d--i~~~~i~ 172 (183)
T PRK10092 151 GDNVVVASGAVVTKD--VPDNVVV 172 (183)
T ss_pred CCCCEECCCCEEccc--cCCCcEE
Confidence 444444444444443 3444444
No 227
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.89 E-value=4.5e-09 Score=79.45 Aligned_cols=93 Identities=20% Similarity=0.351 Sum_probs=73.1
Q ss_pred ceEECCCCEECCCcEEC---CCcEECCCCEECCCcEEe-------------eeEECCCcEECCCcEEeccEEccCCEECC
Q 018327 251 NVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISSSIIGWHSTVGQ 314 (358)
Q Consensus 251 ~~~i~~~~~i~~~~~i~---~~~~ig~~~~ig~~~~i~-------------~~~i~~~~~i~~~~~i~~~~i~~~~~ig~ 314 (358)
+..+.-.+.+..+++|+ .++.+|..|+++++|.|. +..||+++.|+++|++..+.||..+.+|.
T Consensus 33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gk 112 (184)
T KOG3121|consen 33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGK 112 (184)
T ss_pred eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecc
Confidence 44555555566666666 478888888888888882 46899999999999999999999998888
Q ss_pred ccEEcCccEECCCcEECCceEEcCcEEcc
Q 018327 315 WARVENMTILGEDVHVCDEIYSNGGVVLP 343 (358)
Q Consensus 315 ~~~i~~~~~i~~~~~i~~~~~i~~~~v~~ 343 (358)
++.|+.+|++.+-|+|-+++++....+.|
T Consensus 113 naviGrrCVlkdCc~ild~tVlPpet~vp 141 (184)
T KOG3121|consen 113 NAVIGRRCVLKDCCRILDDTVLPPETLVP 141 (184)
T ss_pred ceeEcCceEhhhheeccCCcccCcccccC
Confidence 88888888888888888888886444433
No 228
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.89 E-value=1.1e-08 Score=86.72 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=37.3
Q ss_pred cCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEec
Q 018327 243 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS 303 (358)
Q Consensus 243 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~ 303 (358)
.+++.|.|++++-.++.|++++++.+.++|.-|+.+++++-|. +.++|..++||.||+|++
T Consensus 106 ~~g~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higg 167 (271)
T COG2171 106 PEGVRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGG 167 (271)
T ss_pred cCceeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCC
Confidence 3446666666666666666666665556666666666666665 566666666666666554
No 229
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.89 E-value=7.5e-09 Score=96.17 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=64.2
Q ss_pred cccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEE
Q 018327 239 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV 318 (358)
Q Consensus 239 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i 318 (358)
+..+++++.+ +++.|+++|.|+ ..+ ++|+|+++|+|+++|+|.+|+|++++.|++++.+.+|+|++++.|++++++
T Consensus 278 p~~i~~~~~i-~~~~Ig~~~~i~--~~v-~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~ 353 (369)
T TIGR02092 278 PTYYAENSKV-ENSLVANGCIIE--GKV-ENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKI 353 (369)
T ss_pred CcEEcCCCEE-EEeEEcCCCEEe--eEE-eCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEe
Confidence 3345556655 556667777665 234 489999999999999999999999999999999999999999999999888
Q ss_pred cC
Q 018327 319 EN 320 (358)
Q Consensus 319 ~~ 320 (358)
.+
T Consensus 354 ~~ 355 (369)
T TIGR02092 354 AG 355 (369)
T ss_pred CC
Confidence 66
No 230
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.87 E-value=1.3e-08 Score=77.07 Aligned_cols=6 Identities=0% Similarity=-0.003 Sum_probs=2.4
Q ss_pred cCCCCC
Q 018327 349 SSILKP 354 (358)
Q Consensus 349 ~~~~~~ 354 (358)
+++|++
T Consensus 93 ~~i~~~ 98 (109)
T cd04647 93 KDVPPN 98 (109)
T ss_pred eECCCC
Confidence 344443
No 231
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.83 E-value=5.9e-08 Score=83.21 Aligned_cols=116 Identities=24% Similarity=0.279 Sum_probs=80.9
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET 81 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~ 81 (358)
|||+|.+.++|+.. |.|++++|+|||+|+++.+.+++ +++|+|.+.. +++.+.+.++ +..+......
T Consensus 2 aiIpAR~gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~~~----g~~v~~~~~~ 69 (217)
T PF02348_consen 2 AIIPARGGSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAEEY----GAKVIFRRGS 69 (217)
T ss_dssp EEEEE-SSSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHT----TSEEEE--TT
T ss_pred EEEecCCCCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHHHc----CCeeEEcChh
Confidence 79999999999977 99999999999999999999987 7898877765 6677777665 4666555444
Q ss_pred CcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-c-cCHHHHHHHHHhcCCe
Q 018327 82 EPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-E-YPFAEMIEFHKAHGGE 131 (358)
Q Consensus 82 ~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~-~~l~~~~~~~~~~~~~ 131 (358)
...++. +...+........++.++.+.||..+ . ..+.++++.+.+...+
T Consensus 70 ~~~~~~-r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 70 LADDTD-RFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp SSSHHH-HHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred hcCCcc-cHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 433333 33344333322233367888899943 3 3488999998887664
No 232
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.81 E-value=1.1e-07 Score=85.74 Aligned_cols=157 Identities=23% Similarity=0.291 Sum_probs=100.4
Q ss_pred CeEEEEecCCccccCcCCCCCCCcccccC---CcchHHHHHHHHHHCC-----------CCEEEEEec-cChHHHHHHHH
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAVG-----------VTEVVLAIN-YQPEVMLNFLK 65 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi~---g~pli~~~l~~l~~~g-----------i~~i~vv~~-~~~~~i~~~l~ 65 (358)
|.+||||||.|+||. ...||+|+|++ |+|++++.++.+.+.+ .-.+++.++ +.++++.++++
T Consensus 16 va~viLaGG~GTRLg---~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~~~ 92 (323)
T cd04193 16 VAVLLLAGGQGTRLG---FDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKFFK 92 (323)
T ss_pred EEEEEECCCcccccC---CCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHHHH
Confidence 458999999999994 48899999998 7999999999998842 123457777 56788999998
Q ss_pred hhhhccCc---EEEEecc---------------------CCcCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeecc
Q 018327 66 EFEAKLGI---KIICSQE---------------------TEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEY 116 (358)
Q Consensus 66 ~~~~~~~~---~i~~~~~---------------------~~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~~~ 116 (358)
+ ...+|+ .+.+..| ..|.|.++-.... ++.+....-+.+.+...|.+...
T Consensus 93 ~-~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~ 171 (323)
T cd04193 93 E-NNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVK 171 (323)
T ss_pred h-CCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccccc
Confidence 7 233343 3443322 1244655433222 23332233348999999995433
Q ss_pred C-HHHHHHHHHhcCCeeEEEe---c-CCCCeeeEEEc-CCCCcEEEEeecCC
Q 018327 117 P-FAEMIEFHKAHGGEASIMV---D-EPSKYGVVVME-ESTGKVEKFVEKPK 162 (358)
Q Consensus 117 ~-l~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~d-~~~~~v~~~~ek~~ 162 (358)
. -..++-.+.+++.++.+-+ . ..+.-|.+... .. -.+.++.+-|.
T Consensus 172 ~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~-~~vvEysel~~ 222 (323)
T cd04193 172 VADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGK-PQVVEYSEISD 222 (323)
T ss_pred ccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCe-EEEEEeecCCH
Confidence 2 3677778788888877755 2 23455665543 22 34556666543
No 233
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.81 E-value=4e-08 Score=78.07 Aligned_cols=87 Identities=16% Similarity=0.225 Sum_probs=53.6
Q ss_pred EECCCCEECC-CcEECC-CcEECCCCEECCCcEEeee--EECCC-----cEE-----------CCCcEEeccEEccCCEE
Q 018327 253 LVHESAQIGE-GCLIGP-DVAVGPGCVVESGVRLSRC--TVMRG-----VRI-----------KKHACISSSIIGWHSTV 312 (358)
Q Consensus 253 ~i~~~~~i~~-~~~i~~-~~~ig~~~~ig~~~~i~~~--~i~~~-----~~i-----------~~~~~i~~~~i~~~~~i 312 (358)
.||.++.|+. .+.+.. .+.||++|.|++++.|... .-.++ -.+ .......+++||++|+|
T Consensus 3 ~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I 82 (145)
T cd03349 3 SVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWI 82 (145)
T ss_pred EEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCCEE
Confidence 3444444544 333332 5666666666666666421 11110 011 11223445789999999
Q ss_pred CCccEEcCccEECCCcEECCceEEcCc
Q 018327 313 GQWARVENMTILGEDVHVCDEIYSNGG 339 (358)
Q Consensus 313 g~~~~i~~~~~i~~~~~i~~~~~i~~~ 339 (358)
|.++.+.+++.||++++|++++.+...
T Consensus 83 g~~~~i~~gv~Ig~~~vIgags~V~~~ 109 (145)
T cd03349 83 GHGATILPGVTIGDGAVIAAGAVVTKD 109 (145)
T ss_pred CCCCEEeCCCEECCCCEECCCCEEccc
Confidence 999999888999999999999888653
No 234
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.80 E-value=1.1e-08 Score=83.79 Aligned_cols=81 Identities=22% Similarity=0.307 Sum_probs=59.1
Q ss_pred eEECCCCEECCCcEEC--CCcEECCCCEECCCcEEeeeEECCCcEECC---CcEEeccEEccCCEECCccEEcCccEECC
Q 018327 252 VLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKK---HACISSSIIGWHSTVGQWARVENMTILGE 326 (358)
Q Consensus 252 ~~i~~~~~i~~~~~i~--~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~ig~~~~i~~~~~i~~ 326 (358)
+-|+|.++||+|..+. -+.+||+-++||.++.| ++++++|. ++--+.-.||++|+||.+++|.+++.||+
T Consensus 149 vdihpaa~ig~gilldhatgvvigeTAvvg~~vSi-----lH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGe 223 (269)
T KOG4750|consen 149 VDIHPAAKIGKGILLDHATGVVIGETAVVGDNVSI-----LHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGE 223 (269)
T ss_pred ccccchhhcccceeeccccceeecceeEeccceee-----ecceeeccccccccccCCcccCCeEEccccEEeCCeeECC
Confidence 4577888888887775 24566666666666555 55555543 22223358999999999999999999999
Q ss_pred CcEECCceEEc
Q 018327 327 DVHVCDEIYSN 337 (358)
Q Consensus 327 ~~~i~~~~~i~ 337 (358)
|++|++|+.+.
T Consensus 224 gavIaAGsvV~ 234 (269)
T KOG4750|consen 224 GAVIAAGSVVL 234 (269)
T ss_pred CcEEeccceEE
Confidence 99999988764
No 235
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.72 E-value=1.5e-08 Score=77.34 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=82.7
Q ss_pred cCCcEEecceEECCCCEECCCcEEC---CCcEECCCCEECCCcEEee--------------eEECCCcEECCCcEEeccE
Q 018327 243 ATGANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLSR--------------CTVMRGVRIKKHACISSSI 305 (358)
Q Consensus 243 ~~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~ig~~~~i~~--------------~~i~~~~~i~~~~~i~~~~ 305 (358)
...+.|++.+.|++++++++.+++. +.-+||+|+.|.+.+.|.| -+||.+-...-+|..+...
T Consensus 18 CvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~k 97 (190)
T KOG4042|consen 18 CVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKK 97 (190)
T ss_pred EEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhh
Confidence 3445566888888888888888776 4669999999999988865 2556655555566666668
Q ss_pred EccCCEECCccEEcCccEECCCcEECCceEEcCcEEccCcee
Q 018327 306 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI 347 (358)
Q Consensus 306 i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~~~i 347 (358)
+|++..|+..+.+++|+.+.++|.||+++.+.+....|..++
T Consensus 98 vGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~ 139 (190)
T KOG4042|consen 98 VGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTS 139 (190)
T ss_pred hcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcce
Confidence 999999999999999999999999999999987776665543
No 236
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.69 E-value=9.6e-08 Score=80.09 Aligned_cols=89 Identities=18% Similarity=0.167 Sum_probs=56.5
Q ss_pred cceEECCCCEECCCcEE--CCCcEECCCCEECCCcEEe-eeEECCCcEECCC--cEEeccEEccCCEECCccEEcCccEE
Q 018327 250 GNVLVHESAQIGEGCLI--GPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKH--ACISSSIIGWHSTVGQWARVENMTIL 324 (358)
Q Consensus 250 ~~~~i~~~~~i~~~~~i--~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~--~~i~~~~i~~~~~ig~~~~i~~~~~i 324 (358)
....+|..+.++.++.+ ..+..||+++.++.++.|. ++..++...-..+ .....++||++|+||.+++|.+|+.|
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~I 145 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTI 145 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEE
Confidence 34455555555555442 2344566666666666665 3344433333332 11223789999999999999999999
Q ss_pred CCCcEECCceEEcC
Q 018327 325 GEDVHVCDEIYSNG 338 (358)
Q Consensus 325 ~~~~~i~~~~~i~~ 338 (358)
|++++||+++++.+
T Consensus 146 G~gavigagsVVtk 159 (190)
T COG0110 146 GEGAVIGAGSVVTK 159 (190)
T ss_pred CCCcEEeeCCEEeC
Confidence 99999999988765
No 237
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.67 E-value=1.9e-07 Score=75.61 Aligned_cols=78 Identities=26% Similarity=0.285 Sum_probs=59.9
Q ss_pred cCCcEEecceEECCCCEECC--CcEECCCcEECCCCEECCCcEEee---------eEECCCcEECCCcEEec-cEEccCC
Q 018327 243 ATGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWHS 310 (358)
Q Consensus 243 ~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~ig~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~~ 310 (358)
.-+..|+|.+.||++..|.. +.+|++.++||++|.|-.+++|+. =.|+++|.||.+|.|-+ -.||+++
T Consensus 65 ~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~a 144 (194)
T COG1045 65 LFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNA 144 (194)
T ss_pred hcceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCC
Confidence 35666677777777777755 567888888888888888888862 27899999999888876 4788888
Q ss_pred EECCccEEcC
Q 018327 311 TVGQWARVEN 320 (358)
Q Consensus 311 ~ig~~~~i~~ 320 (358)
.||+|+++..
T Consensus 145 kIGA~sVVlk 154 (194)
T COG1045 145 KIGAGSVVLK 154 (194)
T ss_pred EECCCceEcc
Confidence 8888888876
No 238
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.65 E-value=2.6e-06 Score=70.25 Aligned_cols=184 Identities=16% Similarity=0.279 Sum_probs=109.9
Q ss_pred CeEEEEecCCc-cccCcCCCCCCCcccccCCcchHHHHHHHHHHCC-CCEEEEEeccCh--HHHHHHHHhhhhccCcEEE
Q 018327 1 MKALILVGGFG-TRLRPLTLSVPKPLVEFANKPMILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEAKLGIKII 76 (358)
Q Consensus 1 m~avIla~G~g-~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~g-i~~i~vv~~~~~--~~i~~~l~~~~~~~~~~i~ 76 (358)
|-++|+.|..| +||.. |.|+|+++.|||+|+|+++..+. .++++|.++... +.+..+.. +.|..+.
T Consensus 3 ~I~~IiQARmgStRLpg------KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~----~~G~~vf 72 (241)
T COG1861 3 MILVIIQARMGSTRLPG------KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCR----SHGFYVF 72 (241)
T ss_pred cEEEEeeecccCccCCc------chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHH----HcCeeEe
Confidence 45677777655 55644 99999999999999999999987 788888888743 33444444 4455552
Q ss_pred EeccCCcCCCchHHH-HHHhhccCCCCCcEEEEeCCeee-ccC-HHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCc
Q 018327 77 CSQETEPLGTAGPLA-LARDKLIDDTGEPFFVLNSDVIS-EYP-FAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGK 153 (358)
Q Consensus 77 ~~~~~~~~g~~~sl~-~~~~~i~~~~~~~~lv~~gD~i~-~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 153 (358)
.|+.+.+. +....++.-..+.++=+.||..+ ..+ ++.+++.|.+++++ ++... +.
T Consensus 73 -------rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaD------------Y~s~~---~~ 130 (241)
T COG1861 73 -------RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGAD------------YVSNT---GA 130 (241)
T ss_pred -------cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCc------------ccccc---CC
Confidence 35544333 22233322233367778999944 333 68899999887653 11111 10
Q ss_pred EEEEeecCCCCCCCeEEEEEEEEChhhhhhccCCC--CCcccchHHHHHhcCceEEEe---ec------CeEEecCCHHH
Q 018327 154 VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP--TSIEKEVFPKIALEGKLFAMV---LP------GFWMDIGQPRD 222 (358)
Q Consensus 154 v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~~~~--~~~~~d~l~~l~~~~~v~~~~---~~------~~~~di~t~~d 222 (358)
..-+++-+|+...|+...... .+..+..-+++-++-+.+... .+ ++-..++|.+|
T Consensus 131 --------------p~G~~vEV~~a~~L~~a~k~~~e~~~rEhvT~yi~n~P~~fk~~~l~~p~~~~~~~~RltvDt~eD 196 (241)
T COG1861 131 --------------PLGTDVEVMKARALKKAAKEALEAYYREHVTPYIRNNPERFKVAYLEAPEAWKRPDYRLTVDTQED 196 (241)
T ss_pred --------------ccccceeeeehHHHHHhHhhccchhhhhccCHHHHhCCceEEEEeecChhhccCCceEEEeccHHH
Confidence 122455677777777543221 112233334444443333322 22 35567899999
Q ss_pred HHHHHHHH
Q 018327 223 YITGLRLY 230 (358)
Q Consensus 223 y~~a~~~~ 230 (358)
|.-++..+
T Consensus 197 ~~~~~~vy 204 (241)
T COG1861 197 FALAKAVY 204 (241)
T ss_pred HHHHHHHH
Confidence 98776554
No 239
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=6.1e-08 Score=82.91 Aligned_cols=78 Identities=22% Similarity=0.207 Sum_probs=57.2
Q ss_pred ECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEEccC
Q 018327 266 IGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH 344 (358)
Q Consensus 266 i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v~~~ 344 (358)
|.++++|.+++++-..++|+ |..||.+++||++++|.+|+|.++|+|.+|+.+.+ |+||-++.||.=+.+.+..+.|.
T Consensus 285 IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~-sIigw~s~iGrWaRVe~~pv~~s 363 (407)
T KOG1460|consen 285 IIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLH-SIIGWKSSIGRWARVEGIPVEPS 363 (407)
T ss_pred EEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEe-eeecccccccceeeecccccccC
Confidence 44566666666666666666 66678888888888888888888888888888888 88888888886666655444443
No 240
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.64 E-value=2.4e-07 Score=73.62 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=16.6
Q ss_pred EEcCccEECCCcEECCceEEc-CcEEccCceeccCCCCCcc
Q 018327 317 RVENMTILGEDVHVCDEIYSN-GGVVLPHKEIKSSILKPEI 356 (358)
Q Consensus 317 ~i~~~~~i~~~~~i~~~~~i~-~~~v~~~~~i~~~~~~~~~ 356 (358)
.|+++|.||.++.|.+++.|+ ++.+++++.|.+++|+.++
T Consensus 75 ~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v 115 (145)
T cd03349 75 IIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAI 115 (145)
T ss_pred EECCCCEECCCCEEeCCCEECCCCEECCCCEEccccCCCeE
Confidence 333333333333333333332 3344444444555555443
No 241
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.61 E-value=1.9e-06 Score=81.25 Aligned_cols=180 Identities=21% Similarity=0.313 Sum_probs=108.4
Q ss_pred CeEEEEecCCccccCcCCCCCCCccccc---CCcchHHHHHHHHHHC------------C-CCEEEEEec-cChHHHHHH
Q 018327 1 MKALILVGGFGTRLRPLTLSVPKPLVEF---ANKPMILHQIEALKAV------------G-VTEVVLAIN-YQPEVMLNF 63 (358)
Q Consensus 1 m~avIla~G~g~rl~~~t~~~pK~llpi---~g~pli~~~l~~l~~~------------g-i~~i~vv~~-~~~~~i~~~ 63 (358)
|.+||||||.|+||+. ..||+|+|+ .|+|+++++++++... + .-.++|+++ +..+.+++|
T Consensus 107 vavViLAGG~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~ 183 (482)
T PTZ00339 107 VAVLILAGGLGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQF 183 (482)
T ss_pred eEEEEECCCCcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHH
Confidence 4589999999999975 899999999 4999999999999875 1 124455544 567889999
Q ss_pred HHhhhhccCc---EEEEecc----------------------CCcCCCchHHHHH-----HhhccCCCCCcEEEEeCCee
Q 018327 64 LKEFEAKLGI---KIICSQE----------------------TEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVI 113 (358)
Q Consensus 64 l~~~~~~~~~---~i~~~~~----------------------~~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i 113 (358)
+++. ..+|+ .+.+..| ..|.|.++-.... ++.+....-+++.+...|.+
T Consensus 184 f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~ 262 (482)
T PTZ00339 184 LEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNI 262 (482)
T ss_pred HHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcc
Confidence 9862 12221 1221111 1234665433221 23333333348889999997
Q ss_pred eccC-HHHHHHHHHhcCC-eeEEEe---cCCCCeeeEEEcCCCCcEEEEeecCC-------CCCC----CeEEEEEEEEC
Q 018327 114 SEYP-FAEMIEFHKAHGG-EASIMV---DEPSKYGVVVMEESTGKVEKFVEKPK-------LFVG----NKINAGIYLLN 177 (358)
Q Consensus 114 ~~~~-l~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~d~~~~~v~~~~ek~~-------~~~~----~~~~~Giy~~~ 177 (358)
.... =..++-.+..++. +++-.+ ...+.-|++......-.+.++.|-+. ...+ ...++...+|+
T Consensus 263 L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~~h~fs 342 (482)
T PTZ00339 263 LAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNICSHIFS 342 (482)
T ss_pred cccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccceEEEEEE
Confidence 5433 2566666666666 554443 33355566654321024666665332 1111 23567888899
Q ss_pred hhhhhhc
Q 018327 178 PAVLDRI 184 (358)
Q Consensus 178 ~~~l~~l 184 (358)
-++++++
T Consensus 343 l~fl~~~ 349 (482)
T PTZ00339 343 LDFLKKV 349 (482)
T ss_pred HHHHHHH
Confidence 8888755
No 242
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.51 E-value=3.9e-05 Score=71.90 Aligned_cols=177 Identities=18% Similarity=0.230 Sum_probs=110.7
Q ss_pred EEEEecCCccccCcCCCCCCCccccc-CCcchHHHHHHHHHHC----CC-CEEEEEecc-ChHHHHHHHHhhhhccCcEE
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEF-ANKPMILHQIEALKAV----GV-TEVVLAINY-QPEVMLNFLKEFEAKLGIKI 75 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi-~g~pli~~~l~~l~~~----gi-~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i 75 (358)
+|.||||.|+||+- ..||.++|+ .|+++++..++.+... |. =..++.++. .+++++++++++.. .+..+
T Consensus 82 vlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~-~~~~i 157 (469)
T PLN02474 82 VLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTN-SNIEI 157 (469)
T ss_pred EEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCC-Cccce
Confidence 67799999999987 789999999 5889988887766543 32 234666666 46789999997532 22233
Q ss_pred EEecc------------------------CCcCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeeccCHHHHHHHHH
Q 018327 76 ICSQE------------------------TEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHK 126 (358)
Q Consensus 76 ~~~~~------------------------~~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~ 126 (358)
.+..| ..|.|.++-.... ++.+....-+++.+.+.|.+...-=..++.++.
T Consensus 158 ~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg~~~ 237 (469)
T PLN02474 158 HTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILNHLI 237 (469)
T ss_pred EEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHHHHH
Confidence 22211 1234554422211 233333333489999999964322256777778
Q ss_pred hcCCeeEEEe----cCCCCeeeEEE-cCCCCcEEEEeecCCC--------CCCCeEEEEEEEEChhhhhhc
Q 018327 127 AHGGEASIMV----DEPSKYGVVVM-EESTGKVEKFVEKPKL--------FVGNKINAGIYLLNPAVLDRI 184 (358)
Q Consensus 127 ~~~~~~~~~~----~~~~~~~~~~~-d~~~~~v~~~~ek~~~--------~~~~~~~~Giy~~~~~~l~~l 184 (358)
.++.+.++-+ .....-|.+.. |.. -++.++.+-|.+ ..-...++..++|+-++++++
T Consensus 238 ~~~~e~~~ev~~Kt~~d~kgG~l~~~dgk-~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~ 307 (469)
T PLN02474 238 QNKNEYCMEVTPKTLADVKGGTLISYEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (469)
T ss_pred hcCCceEEEEeecCCCCCCccEEEEECCE-EEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHH
Confidence 7877777665 22233455553 322 346777776642 133468999999999888876
No 243
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.50 E-value=1.9e-07 Score=81.28 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=51.7
Q ss_pred ECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEE-cCcEEcc
Q 018327 266 IGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS-NGGVVLP 343 (358)
Q Consensus 266 i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i-~~~~v~~ 343 (358)
+.++..+.+-..+|++|.|+ |++||.+|+|++++.|++|.+..+..++..+.|.. +++|-++.||.++.+ +.+.++.
T Consensus 261 i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s-~ivg~~~~IG~~~~id~~a~lG~ 339 (371)
T KOG1322|consen 261 IVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISS-SIVGWNVPIGIWARIDKNAVLGK 339 (371)
T ss_pred ccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHh-hhccccccccCceEEecccEecc
Confidence 33445555555555666666 46778888888888888888888887776666665 555555555555555 2444444
Q ss_pred Ccee
Q 018327 344 HKEI 347 (358)
Q Consensus 344 ~~~i 347 (358)
+..|
T Consensus 340 nV~V 343 (371)
T KOG1322|consen 340 NVIV 343 (371)
T ss_pred ceEE
Confidence 4443
No 244
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.47 E-value=3.5e-07 Score=91.00 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=55.8
Q ss_pred EecceEECCCCEECCCcEECCC-------cEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327 248 IVGNVLVHESAQIGEGCLIGPD-------VAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN 320 (358)
Q Consensus 248 i~~~~~i~~~~~i~~~~~i~~~-------~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 320 (358)
+.+......+++||+++.|+.. +.||++|.|+++|.|.. ...++.. -.+.++.||++|.||.+++|.+
T Consensus 588 ~~~~~lr~lGa~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~-h~~~~~~----~~~~~v~IG~~~~IG~~a~V~~ 662 (695)
T TIGR02353 588 FLPAILRLLGVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQT-HLFEDRV----MKSDTVTIGDGATLGPGAIVLY 662 (695)
T ss_pred HHHHHHHHCCCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEe-ccccccc----cccCCeEECCCCEECCCCEECC
Confidence 3344444455555555555432 35555555555555532 1111111 1244578888888888888888
Q ss_pred ccEECCCcEECCceEEc-CcEEccCce
Q 018327 321 MTILGEDVHVCDEIYSN-GGVVLPHKE 346 (358)
Q Consensus 321 ~~~i~~~~~i~~~~~i~-~~~v~~~~~ 346 (358)
++.||++++|++++.+. +..+.|++.
T Consensus 663 g~~IGd~a~Ig~~SvV~~g~~vp~~s~ 689 (695)
T TIGR02353 663 GVVMGEGSVLGPDSLVMKGEEVPAHTR 689 (695)
T ss_pred CCEECCCCEECCCCEEcCCcccCCCCE
Confidence 88888888888888874 445555543
No 245
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.45 E-value=5.9e-07 Score=89.42 Aligned_cols=65 Identities=15% Similarity=0.259 Sum_probs=45.5
Q ss_pred CCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEccCCEECCccEEcCccEECCCcEECCceEEcC
Q 018327 268 PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 338 (358)
Q Consensus 268 ~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~ 338 (358)
+...||+||.|+++|.+.+..+ ..+....+ .+||++|.||.+++|.+++.||++++|++++.+.+
T Consensus 130 ~li~IG~~~~I~~~v~l~~~~~------~~~~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~ 195 (695)
T TIGR02353 130 DLLTIGAGTIVRKEVMLLGYRA------ERGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQG 195 (695)
T ss_pred CceEECCCCEECCCCEEEcccC------CCCceeecCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecC
Confidence 3455677777777666643222 23333333 58899999999999988899999999999988864
No 246
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.39 E-value=5.2e-06 Score=68.76 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=60.2
Q ss_pred CCCcccccCC--cchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327 21 VPKPLVEFAN--KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI 98 (358)
Q Consensus 21 ~pK~llpi~g--~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~ 98 (358)
.+|+|+++.| +|||+|+++.+. ..+++++|++++. +.. . ..++.+.. ......|...++..+.....
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~-~~~----~----~~~~~~i~-d~~~g~gpl~~~~~gl~~~~ 71 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPG-QPL----P----ELPAPVLR-DELRGLGPLPATGRGLRAAA 71 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCC-ccc----c----cCCCCEec-cCCCCCCcHHHHHHHHHHHH
Confidence 4899999999 999999999776 4589999999864 211 1 11333322 22333466665655554331
Q ss_pred CCCCCcEEEEeCCee-eccC-HHHHHHHHH
Q 018327 99 DDTGEPFFVLNSDVI-SEYP-FAEMIEFHK 126 (358)
Q Consensus 99 ~~~~~~~lv~~gD~i-~~~~-l~~~~~~~~ 126 (358)
....+.++++.||+. ...+ +..+++.+.
T Consensus 72 ~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 72 EAGARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred hcCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 122348999999993 3333 667666543
No 247
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=98.28 E-value=5.3e-06 Score=68.51 Aligned_cols=107 Identities=16% Similarity=0.280 Sum_probs=79.2
Q ss_pred cCCcEEe-cceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEec-cEEccCCEECCccEEcC
Q 018327 243 ATGANIV-GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVEN 320 (358)
Q Consensus 243 ~~~~~i~-~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~~i~~ 320 (358)
++.+.+. ..+...-...||+++.+. ..++++...+|+++.|...++..++.|+.+|.+.+ .+...+++||.++.|..
T Consensus 7 Pp~Tr~e~~~ivv~gdViIG~nS~l~-~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~g 85 (277)
T COG4801 7 PPNTRVEEAIIVVKGDVIIGKNSMLK-YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKG 85 (277)
T ss_pred CCCCceeeeeEEEeccEEEcccceee-eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeee
Confidence 4444443 223333334445555553 55788888888999998888889999999999987 68888899999999999
Q ss_pred ccEECCCcEECCceEEcCcEEccCceeccC
Q 018327 321 MTILGEDVHVCDEIYSNGGVVLPHKEIKSS 350 (358)
Q Consensus 321 ~~~i~~~~~i~~~~~i~~~~v~~~~~i~~~ 350 (358)
..++..+-.||+++.|+++.+..+-.+.++
T Consensus 86 kl~v~gdLdig~dV~Ieggfva~g~Ivirn 115 (277)
T COG4801 86 KLTVIGDLDIGADVIIEGGFVAKGWIVIRN 115 (277)
T ss_pred eEEEecccccccceEEecCeeecceEEEcC
Confidence 888888899999999888887666555443
No 248
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.27 E-value=1.5e-06 Score=66.03 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=45.4
Q ss_pred ccCCcEEe---cceEECCCCEECCCcEECC------------CcEECCCCEECCCcEEeeeEECCCcEECCCcEEec
Q 018327 242 LATGANIV---GNVLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS 303 (358)
Q Consensus 242 ~~~~~~i~---~~~~i~~~~~i~~~~~i~~------------~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~ 303 (358)
+.+++.|. .++.+|..++++.+++|++ +..||+++.|++.|++.-+.||..+.+|.+|+|++
T Consensus 42 v~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGr 118 (184)
T KOG3121|consen 42 VEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGR 118 (184)
T ss_pred EeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccceeEcC
Confidence 34666665 3677777778888777774 35788888888888888788888888777665544
No 249
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.16 E-value=1.8e-05 Score=74.15 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=33.1
Q ss_pred ECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccC
Q 018327 260 IGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWH 309 (358)
Q Consensus 260 i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~ 309 (358)
+.+++.|- ||++..++.+|++++|.+|.|+.++.||++|.|.++-+...
T Consensus 276 ~~~~~~Vi-nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~ 324 (414)
T PF07959_consen 276 SEASSCVI-NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSW 324 (414)
T ss_pred cCCCeeEE-EeEecCCceECCCCEEEeeecCCCCEECCCCEEECCccccc
Confidence 34444443 77777777777777777777777777777777777644443
No 250
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.14 E-value=0.00012 Score=65.12 Aligned_cols=177 Identities=21% Similarity=0.281 Sum_probs=110.7
Q ss_pred EEEEecCCccccCcCCCCCCCccccc-CCcchHHHHHHHHHHC----C-CCEEEEEecc-ChHHHHHHHHhhhhccCcEE
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEF-ANKPMILHQIEALKAV----G-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKI 75 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi-~g~pli~~~l~~l~~~----g-i~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i 75 (358)
+|+||||.|+||+- ..||.|+|+ .|+++++..++.+... + .=..+|.++. .++++.++++++.. ....+
T Consensus 6 vl~LaGG~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~-~~~~v 81 (300)
T cd00897 6 VLKLNGGLGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG-VNVDI 81 (300)
T ss_pred EEEecCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC-CccCe
Confidence 57899999999976 789999999 5889999998888653 3 2245666666 46789999987531 11111
Q ss_pred EEec------------------------cCCcCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeeccCHHHHHHHHH
Q 018327 76 ICSQ------------------------ETEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHK 126 (358)
Q Consensus 76 ~~~~------------------------~~~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~ 126 (358)
.+.. ...|.|.++-.... ++.+....-+++.+.+.|.+...-=..++..+.
T Consensus 82 ~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg~~~ 161 (300)
T cd00897 82 HTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILNHMV 161 (300)
T ss_pred EEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHHHHH
Confidence 1111 11234554422211 122222333489999999964322256778888
Q ss_pred hcCCeeEEEe---cCC-CCeeeEEE-cCCCCcEEEEeecCCCC--------CCCeEEEEEEEEChhhhhhc
Q 018327 127 AHGGEASIMV---DEP-SKYGVVVM-EESTGKVEKFVEKPKLF--------VGNKINAGIYLLNPAVLDRI 184 (358)
Q Consensus 127 ~~~~~~~~~~---~~~-~~~~~~~~-d~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~l~~l 184 (358)
.++.+.++-+ ..+ +.-|.+.. |.. -++.++.+-|.+. .-.+.++..++|+-++++.+
T Consensus 162 ~~~~~~~~evv~Kt~~dek~G~l~~~~g~-~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~ 231 (300)
T cd00897 162 DNKAEYIMEVTDKTRADVKGGTLIQYEGK-LRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRV 231 (300)
T ss_pred hcCCceEEEEeecCCCCCcccEEEEECCE-EEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHH
Confidence 8888887755 222 35555554 322 3467777766421 23367888889998887765
No 251
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=98.05 E-value=1.4e-05 Score=66.01 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=59.8
Q ss_pred CcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEcCcEE
Q 018327 269 DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 341 (358)
Q Consensus 269 ~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~~~~v 341 (358)
+.++...+.||.|+.+.-.++++.+.+|+++.|.+.+++.++.|+.||++..+++++.++.||..+.+++..+
T Consensus 16 ~ivv~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~ 88 (277)
T COG4801 16 IIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLT 88 (277)
T ss_pred eEEEeccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEE
Confidence 4455666777778888877888888889999999988888888888888888888888888888888877555
No 252
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=98.05 E-value=5.3e-06 Score=48.91 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=14.7
Q ss_pred EEccCCEECCccEEcCccEECCCcEECCceEE
Q 018327 305 IIGWHSTVGQWARVENMTILGEDVHVCDEIYS 336 (358)
Q Consensus 305 ~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i 336 (358)
.|++++.|++++.|.+++.||+++.|++++.|
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 34444444444444444444444444444444
No 253
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.97 E-value=8.1e-06 Score=48.09 Aligned_cols=11 Identities=9% Similarity=-0.037 Sum_probs=3.7
Q ss_pred ECCCcEECCCc
Q 018327 289 VMRGVRIKKHA 299 (358)
Q Consensus 289 i~~~~~i~~~~ 299 (358)
|++++.|++++
T Consensus 22 Ig~~~~I~~~~ 32 (36)
T PF00132_consen 22 IGDNCVIGPGV 32 (36)
T ss_dssp E-TTEEEETTE
T ss_pred ECCCCEEcCCC
Confidence 33333333333
No 254
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=97.93 E-value=0.00017 Score=60.60 Aligned_cols=86 Identities=16% Similarity=0.263 Sum_probs=60.5
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEe
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN 109 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~ 109 (358)
-+|||+|+++.+..+++++++++++. +++.++... +++.+. .+.. .|..+++..+.+.+.... +.++++.
T Consensus 29 ~~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~----~~v~~i--~~~~-~G~~~si~~al~~~~~~~-~~vlv~~ 98 (195)
T TIGR03552 29 ALAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN----LGAPVL--RDPG-PGLNNALNAALAEAREPG-GAVLILM 98 (195)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh----cCCEEE--ecCC-CCHHHHHHHHHHHhhccC-CeEEEEe
Confidence 47999999999999887888888774 445544433 245443 3333 388999999988774322 3799999
Q ss_pred CCee--eccCHHHHHHHH
Q 018327 110 SDVI--SEYPFAEMIEFH 125 (358)
Q Consensus 110 gD~i--~~~~l~~~~~~~ 125 (358)
+|.. ....++++++.+
T Consensus 99 ~D~P~l~~~~i~~l~~~~ 116 (195)
T TIGR03552 99 ADLPLLTPRELKRLLAAA 116 (195)
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 9993 344577777765
No 255
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.82 E-value=4.1e-05 Score=58.82 Aligned_cols=53 Identities=25% Similarity=0.223 Sum_probs=40.1
Q ss_pred ceEECCCCEECCCcEECCCcEECCCCEECCCcEEe----eeEECCCcEECCCcEEec
Q 018327 251 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS 303 (358)
Q Consensus 251 ~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~----~~~i~~~~~i~~~~~i~~ 303 (358)
.+.|.|++.++..+-|++.+.|+++|+|-+.+++. -.+||+|+.|.+.+.|.+
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRN 64 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHh
Confidence 36677777777777777788888888888877775 357888888877777765
No 256
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.74 E-value=5.1e-05 Score=62.57 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=37.1
Q ss_pred ecceEECCCCEECC--CcEECCCcEECCCCEECCCcEEee---------eEECCCcEECCCcEEec-cEEccCCEECCcc
Q 018327 249 VGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACISS-SIIGWHSTVGQWA 316 (358)
Q Consensus 249 ~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~ig~~~~i~~---------~~i~~~~~i~~~~~i~~-~~i~~~~~ig~~~ 316 (358)
+|.+.||.+-.+.. +++|++-++||++|.|..++.++. =.||+||.||.++.|-+ ..||++++|++++
T Consensus 152 hpaa~ig~gilldhatgvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGs 231 (269)
T KOG4750|consen 152 HPAAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGS 231 (269)
T ss_pred cchhhcccceeeccccceeecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEEeccc
Confidence 34444444444332 556666666666666666666641 24566666665554433 3444454444444
Q ss_pred EEc
Q 018327 317 RVE 319 (358)
Q Consensus 317 ~i~ 319 (358)
.+.
T Consensus 232 vV~ 234 (269)
T KOG4750|consen 232 VVL 234 (269)
T ss_pred eEE
Confidence 444
No 257
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.69 E-value=0.00061 Score=64.47 Aligned_cols=178 Identities=20% Similarity=0.249 Sum_probs=109.4
Q ss_pred EEEEecCCccccCcCCCCCCCcccccC---CcchHHHHHHHHHHC--------------C-CCEEEEEecc-ChHHHHHH
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV--------------G-VTEVVLAINY-QPEVMLNF 63 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~---g~pli~~~l~~l~~~--------------g-i~~i~vv~~~-~~~~i~~~ 63 (358)
+|+||||.|+||+- ..||.|++|+ ++++++...+++.+. + .=..+|.++. .+++++++
T Consensus 119 vvlLAGGqGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~f 195 (493)
T PLN02435 119 VVLLSGGQGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKF 195 (493)
T ss_pred EEEeCCCcccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHH
Confidence 56789999999987 8999999885 899999998876432 1 1144777776 46789999
Q ss_pred HHhhhhccCc---EEEEecc---------------------CCcCCCchHHHHH-----HhhccCCCCCcEEEEeCCeee
Q 018327 64 LKEFEAKLGI---KIICSQE---------------------TEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVIS 114 (358)
Q Consensus 64 l~~~~~~~~~---~i~~~~~---------------------~~~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~ 114 (358)
+++. ..+|. .+.+..| ..|.|.++-.... ++.+....-+.+.+...|.+.
T Consensus 196 f~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L 274 (493)
T PLN02435 196 FESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNAL 274 (493)
T ss_pred HHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEeccccc
Confidence 9862 22222 2222211 2345665532222 233322333488899999964
Q ss_pred ccC-HHHHHHHHHhcCCeeEEEe---cCC-CCeeeEEEcCCCCc--EEEEeecCCC------C-CC----CeEEEEEEEE
Q 018327 115 EYP-FAEMIEFHKAHGGEASIMV---DEP-SKYGVVVMEESTGK--VEKFVEKPKL------F-VG----NKINAGIYLL 176 (358)
Q Consensus 115 ~~~-l~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~d~~~~~--v~~~~ek~~~------~-~~----~~~~~Giy~~ 176 (358)
... -..++-.+..++.++.+-+ ..+ +.-|.++....+|+ |.++.|-+.. . .+ ...+...++|
T Consensus 275 ~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~f 354 (493)
T PLN02435 275 VRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMF 354 (493)
T ss_pred ccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccchhhHHHhhc
Confidence 333 3677777777887777655 223 45577765211144 6666654421 1 12 3356778889
Q ss_pred Chhhhhhc
Q 018327 177 NPAVLDRI 184 (358)
Q Consensus 177 ~~~~l~~l 184 (358)
+-++++.+
T Consensus 355 s~~fL~~~ 362 (493)
T PLN02435 355 TLDFLNQV 362 (493)
T ss_pred cHHHHHHH
Confidence 98888876
No 258
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=97.65 E-value=0.00044 Score=70.35 Aligned_cols=199 Identities=12% Similarity=0.163 Sum_probs=112.4
Q ss_pred cEEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe-----cCCCCeeeEEEcCCC-CcEEEEeecCC--------CCCCCeE
Q 018327 104 PFFVLNSDVISEYPFAEMIEFHKAHGGEASIMV-----DEPSKYGVVVMEEST-GKVEKFVEKPK--------LFVGNKI 169 (358)
Q Consensus 104 ~~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~-~~v~~~~ek~~--------~~~~~~~ 169 (358)
.++|..||.+..++ ..+... ...+++... +-..++|++..|.+. +++..+..||. ....-+.
T Consensus 154 g~li~~gDv~~~f~--~~~~~~--~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~l~ 229 (974)
T PRK13412 154 HTLIASGDVYIRSE--QPLQDI--PEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLFLM 229 (974)
T ss_pred ceEEEecchhhhcc--ccccCC--CccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeEEE
Confidence 58999999855432 111111 112332222 445789999988752 57788888886 1223368
Q ss_pred EEEEEEEChhhhhhccCC------CC----CcccchHHHHH----------hcCceEEEeec-CeEEecCCHHHHHHHHH
Q 018327 170 NAGIYLLNPAVLDRIELR------PT----SIEKEVFPKIA----------LEGKLFAMVLP-GFWMDIGQPRDYITGLR 228 (358)
Q Consensus 170 ~~Giy~~~~~~l~~l~~~------~~----~~~~d~l~~l~----------~~~~v~~~~~~-~~~~di~t~~dy~~a~~ 228 (358)
++|+|+|+.++.+.|... +. ++..||+..|- +.-++....++ +.++.++|-.+|+...-
T Consensus 230 D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~~~~ 309 (974)
T PRK13412 230 DIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELISSTL 309 (974)
T ss_pred eeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhcCch
Confidence 999999999888765421 11 22234443322 12234444443 57999999998886432
Q ss_pred HHHHhhcccCcccccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcE-EeeeEECCCcEECCCcEEeccE-E
Q 018327 229 LYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVR-LSRCTVMRGVRIKKHACISSSI-I 306 (358)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~-i~~~~i~~~~~i~~~~~i~~~~-i 306 (358)
.+.+...- ....++.. +.+ .+.+.+ -|+++.+++.+++++. |++|.|+.+++||++|+|.++. .
T Consensus 310 ~~q~~~~~-~~~i~~~~--~~~----------~~~~~v-~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~ 375 (974)
T PRK13412 310 AVQNLVTD-QRRIMHRK--VKP----------HPAMFV-QNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPEN 375 (974)
T ss_pred hHHHHhhh-hhhhhccc--cCC----------CCceEE-EeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEeccccc
Confidence 22211110 00111110 010 111223 3788888888888744 6688888888888888888863 3
Q ss_pred ccCCEECCccEEcC
Q 018327 307 GWHSTVGQWARVEN 320 (358)
Q Consensus 307 ~~~~~ig~~~~i~~ 320 (358)
.-+..|-+++.|-.
T Consensus 376 ~~~~~vP~~~ci~~ 389 (974)
T PRK13412 376 SWNLDLPEGVCIDV 389 (974)
T ss_pred ccceecCCCcEEEE
Confidence 33455556555554
No 259
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.62 E-value=0.00052 Score=57.38 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=60.6
Q ss_pred CCcEECCCCEECCCcEEe---eeEECCCcEECCCcEEec-cEEccCCEE-------CCccEEcCccEECCCcEECCceEE
Q 018327 268 PDVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACISS-SIIGWHSTV-------GQWARVENMTILGEDVHVCDEIYS 336 (358)
Q Consensus 268 ~~~~ig~~~~ig~~~~i~---~~~i~~~~~i~~~~~i~~-~~i~~~~~i-------g~~~~i~~~~~i~~~~~i~~~~~i 336 (358)
.+..+|.+|.++.++.+. +..|++++.+++++.|.. +..++...- ...++|+++++||.+++|-.|++|
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~I 145 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTI 145 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEE
Confidence 355666666666666643 455777777777777775 233222211 224677777777777777777777
Q ss_pred c-CcEEccCceeccCCCCCccc
Q 018327 337 N-GGVVLPHKEIKSSILKPEIV 357 (358)
Q Consensus 337 ~-~~~v~~~~~i~~~~~~~~~~ 357 (358)
+ |++++.++.+.+|+|+.+|+
T Consensus 146 G~gavigagsVVtkdvp~~~iv 167 (190)
T COG0110 146 GEGAVIGAGSVVTKDVPPYGIV 167 (190)
T ss_pred CCCcEEeeCCEEeCccCCCeEE
Confidence 5 77778899999999998775
No 260
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.57 E-value=0.0048 Score=57.77 Aligned_cols=177 Identities=24% Similarity=0.304 Sum_probs=106.1
Q ss_pred EEEEecCCccccCcCCCCCCCccccc-CCcchHHHHHHHHHH----CC-CCEEEEEecc-ChHHHHHHHHhhhhccCcEE
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEF-ANKPMILHQIEALKA----VG-VTEVVLAINY-QPEVMLNFLKEFEAKLGIKI 75 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi-~g~pli~~~l~~l~~----~g-i~~i~vv~~~-~~~~i~~~l~~~~~~~~~~i 75 (358)
+++||||.|+||+- ..||.++|+ .++.+++..++.+.. .+ .-..+|.++. .+++++++++++... +..+
T Consensus 59 vl~LaGGlGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~-~~~v 134 (420)
T PF01704_consen 59 VLKLAGGLGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL-DVDV 134 (420)
T ss_dssp EEEEEESBSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS-SCCE
T ss_pred EEEEcCcccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC-Ccce
Confidence 56799999999987 789999999 577788888776664 23 2345666666 578899999984321 1122
Q ss_pred EEecc-----------------C--C-------cCCCchHHHHH-----HhhccCCCCCcEEEEeCCeeeccCHHHHHHH
Q 018327 76 ICSQE-----------------T--E-------PLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEYPFAEMIEF 124 (358)
Q Consensus 76 ~~~~~-----------------~--~-------~~g~~~sl~~~-----~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~ 124 (358)
.+..| . . |-|.++-.... ++.+....-+.+.+.+.|.+...-=..++..
T Consensus 135 ~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~~lG~ 214 (420)
T PF01704_consen 135 FFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPVFLGY 214 (420)
T ss_dssp EEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HHHHHH
T ss_pred EEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHHHHHH
Confidence 21110 0 0 23565522221 1223223334999999999443222467788
Q ss_pred HHhcCCeeEEEe---cCC-CCeeeEEEcCCCCc--EEEEeecCCC--------CCCCeEEEEEEEEChhhhhhcc
Q 018327 125 HKAHGGEASIMV---DEP-SKYGVVVMEESTGK--VEKFVEKPKL--------FVGNKINAGIYLLNPAVLDRIE 185 (358)
Q Consensus 125 ~~~~~~~~~~~~---~~~-~~~~~~~~d~~~~~--v~~~~ek~~~--------~~~~~~~~Giy~~~~~~l~~l~ 185 (358)
+.+++.+..+-+ ..+ ..-|++...+ |+ +.++.+-|.+ ......+++-.+|+-++++.+.
T Consensus 215 ~~~~~~~~~~evv~Kt~~dek~Gvl~~~~--G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~~ 287 (420)
T PF01704_consen 215 MIEKNADFGMEVVPKTSPDEKGGVLCRYD--GKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRLL 287 (420)
T ss_dssp HHHTT-SEEEEEEE-CSTTTSSEEEEEET--TEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHHH
T ss_pred HHhccchhheeeeecCCCCCceeEEEEeC--CccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHHH
Confidence 888888777666 222 4556666432 54 5555554431 1234678888899988888663
No 261
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.006 Score=56.67 Aligned_cols=176 Identities=24% Similarity=0.293 Sum_probs=104.2
Q ss_pred EEEEecCCccccCcCCCCCCCcccccC-CcchHHHHHHHHHHC----CC-CEEEEEeccChHHHHHHHHhhhhccCc---
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFA-NKPMILHQIEALKAV----GV-TEVVLAINYQPEVMLNFLKEFEAKLGI--- 73 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~-g~pli~~~l~~l~~~----gi-~~i~vv~~~~~~~i~~~l~~~~~~~~~--- 73 (358)
++.||||.|+||+- ..||.+++|. |+++++.+.+.++.+ ++ -..++.++...++...++... +.++.
T Consensus 108 vl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~-~Y~~~~k~ 183 (472)
T COG4284 108 VLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSN-DYFGLDKE 183 (472)
T ss_pred EEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhh-hhcCCCHH
Confidence 57799999999988 7899999998 999998887766554 32 244666666666777776641 11111
Q ss_pred EEEEec-----------------------cCCcCCCch---HHHH--HHhhccCCCCCcEEEEeCCeeeccCH-HHHHHH
Q 018327 74 KIICSQ-----------------------ETEPLGTAG---PLAL--ARDKLIDDTGEPFFVLNSDVISEYPF-AEMIEF 124 (358)
Q Consensus 74 ~i~~~~-----------------------~~~~~g~~~---sl~~--~~~~i~~~~~~~~lv~~gD~i~~~~l-~~~~~~ 124 (358)
.|.+.. ..-|.|.++ ++.. ..+.+...+-+.+.|.+.|.+ ...+ -.++.+
T Consensus 184 ~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL-~~~vD~~~lg~ 262 (472)
T COG4284 184 DIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNL-GATVDLKFLGF 262 (472)
T ss_pred HeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEeccccc-ccccCHHHHHH
Confidence 111110 112345543 3332 222222233348889999993 3333 356677
Q ss_pred HHhcCCeeEEEe----cCCCCeeeEE-EcCCCCcEEEEeecCCCC----CCC------eEE-EEEEEEChhhhhhc
Q 018327 125 HKAHGGEASIMV----DEPSKYGVVV-MEESTGKVEKFVEKPKLF----VGN------KIN-AGIYLLNPAVLDRI 184 (358)
Q Consensus 125 ~~~~~~~~~~~~----~~~~~~~~~~-~d~~~~~v~~~~ek~~~~----~~~------~~~-~Giy~~~~~~l~~l 184 (358)
+.+.+.+.++-+ +....-|++. .|.. -+++++.+-|... .+. ..+ .++++++-+.+...
T Consensus 263 ~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~~g~-~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~~ 337 (472)
T COG4284 263 MAETNYEYLMETTDKTKADEKVGILVTYDGK-LRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFLKEA 337 (472)
T ss_pred HHhcCcceeEEEeecccccccceEEEEeCCc-eEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHHHhh
Confidence 777777776665 2234556665 6665 6888888776521 111 123 66777766665543
No 262
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.06 E-value=0.0016 Score=58.17 Aligned_cols=140 Identities=14% Similarity=0.195 Sum_probs=84.9
Q ss_pred EEEEecCCccccCcCCCCCCCccccc---CCcchHHHHHHHHHHCC---------CCEEEEEecc-ChHHHHHHHHhhhh
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEF---ANKPMILHQIEALKAVG---------VTEVVLAINY-QPEVMLNFLKEFEA 69 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi---~g~pli~~~l~~l~~~g---------i~~i~vv~~~-~~~~i~~~l~~~~~ 69 (358)
+|+||+|.|+||+- +.||.++|+ .|+++++...+++.+.. .=..+|.++. .++++++++++..
T Consensus 3 ~vllaGG~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~- 78 (315)
T cd06424 3 FVLVAGGLGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENN- 78 (315)
T ss_pred EEEecCCCccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCC-
Confidence 68899999999987 799999999 49999999988776532 2355777776 4688999998621
Q ss_pred ccCc---EEEEec------------------------cCCcCCCchHHHHHH------hhccCCCCCcEEEEeCCeeecc
Q 018327 70 KLGI---KIICSQ------------------------ETEPLGTAGPLALAR------DKLIDDTGEPFFVLNSDVISEY 116 (358)
Q Consensus 70 ~~~~---~i~~~~------------------------~~~~~g~~~sl~~~~------~~i~~~~~~~~lv~~gD~i~~~ 116 (358)
.+|. .+.+.. ...|-|.++ ++.++ +.+.+..-+.+.+...|.+...
T Consensus 79 yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGd-iy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 79 YFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGD-VHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred ccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchH-HHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 1111 111111 122445554 33322 2232233337778788875443
Q ss_pred C-HHHHHHHHHhcCCeeEEEe---cCCCCeeeEEE
Q 018327 117 P-FAEMIEFHKAHGGEASIMV---DEPSKYGVVVM 147 (358)
Q Consensus 117 ~-l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 147 (358)
. ...++-.+.+.+.++...+ ...+.-|+++.
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~~E~vG~~~~ 192 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKPKEAIGALCK 192 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCCCCceeeEEE
Confidence 3 3455555555666665544 33356676653
No 263
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=96.69 E-value=0.028 Score=43.95 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=68.0
Q ss_pred cccCC-cchHHHHHHHHHHCC--CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327 26 VEFAN-KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (358)
Q Consensus 26 lpi~g-~pli~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~ 102 (358)
+|..| .+++.++++++.+.+ ..+++++.+...++..+.+.++.+. ...+.........|.+.++..+.+.. ..
T Consensus 3 i~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~--~~- 78 (156)
T cd00761 3 IPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAA--RG- 78 (156)
T ss_pred EeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHh--cC-
Confidence 34444 479999999999997 7888888888777777777765332 12233344555668888888888777 33
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHH
Q 018327 103 EPFFVLNSDVISEYP-FAEMIEFHK 126 (358)
Q Consensus 103 ~~~lv~~gD~i~~~~-l~~~~~~~~ 126 (358)
+.++++.+|.++..+ +..++..+.
T Consensus 79 d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 79 EYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred CEEEEECCCCccCccHHHHHHHHHh
Confidence 389999999987766 555544443
No 264
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.58 E-value=0.046 Score=53.60 Aligned_cols=140 Identities=15% Similarity=0.205 Sum_probs=87.6
Q ss_pred EEEEecCCccccCcCCCCCCCcccccC---CcchHHHHHHHHHHC--------C----CCEEEEEecc-ChHHHHHHHHh
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV--------G----VTEVVLAINY-QPEVMLNFLKE 66 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~---g~pli~~~l~~l~~~--------g----i~~i~vv~~~-~~~~i~~~l~~ 66 (358)
+|+||+|.|+||+- ..||.++|++ |+++++..++.+.+. + .-..+|.++. .++++.+++++
T Consensus 131 vllLaGGlGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~ 207 (615)
T PLN02830 131 FVLVAGGLGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLER 207 (615)
T ss_pred EEEecCCcccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHH
Confidence 57799999999987 7899999983 999999999887654 1 2246777776 46789999997
Q ss_pred hhhccCc---EEEEecc------------------------CCcCCCchHHHHHH------hhccCCCCCcEEEEeCCee
Q 018327 67 FEAKLGI---KIICSQE------------------------TEPLGTAGPLALAR------DKLIDDTGEPFFVLNSDVI 113 (358)
Q Consensus 67 ~~~~~~~---~i~~~~~------------------------~~~~g~~~sl~~~~------~~i~~~~~~~~lv~~gD~i 113 (358)
. ..+|. .+.+..| ..|-|.++ ++.++ +.+....-+++.+...|.+
T Consensus 208 n-~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGd-i~~aL~~sGlLd~l~~~G~~yi~v~~vDN~ 285 (615)
T PLN02830 208 N-DYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGD-VHALLYSSGLLDKWLSAGKKWVVFFQDTNG 285 (615)
T ss_pred C-CccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccH-HHHHHHHCCCHHHHHHcCCEEEEEEeccch
Confidence 3 12221 1221111 12334444 22222 2232233348889999994
Q ss_pred ecc-CHHHHHHHHHhcCCeeEEEe--c-CCCCeeeEEE
Q 018327 114 SEY-PFAEMIEFHKAHGGEASIMV--D-EPSKYGVVVM 147 (358)
Q Consensus 114 ~~~-~l~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~ 147 (358)
... ....++-.+..++.++.+.+ . ..+.-|+++.
T Consensus 286 L~~~Adp~flG~~~~~~~d~~~kvv~K~~~E~vGvi~~ 323 (615)
T PLN02830 286 LVFKAIPAALGVSATKGFDMNSLAVPRKAKEAIGAIAK 323 (615)
T ss_pred hhhcccHHHhHHHHhcCCceEEEEEECCCCcccceEEE
Confidence 332 24778888888877776665 2 2345565554
No 265
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=96.44 E-value=0.022 Score=45.62 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=72.4
Q ss_pred cccCCcc-hHHHHHHHHHHC--CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327 26 VEFANKP-MILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l~~~--gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~ 102 (358)
+|.-|++ .|..+|+.+.+. ...+++|+-+...++..+.++++.+ .+..+.+....+..|...+...+.+.. ..+
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a--~~~ 80 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHA--KGE 80 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH----SS
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-ccccccccccccccccccccccccccc--cee
Confidence 5666664 899999999887 3556666665555667777777544 234455555555558888888888887 444
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEEE
Q 018327 103 EPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIM 135 (358)
Q Consensus 103 ~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~~ 135 (358)
.++++..|.+...+ +..+++.+.+.+.++.+.
T Consensus 81 -~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~ 113 (169)
T PF00535_consen 81 -YILFLDDDDIISPDWLEELVEALEKNPPDVVIG 113 (169)
T ss_dssp -EEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEE
T ss_pred -EEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEE
Confidence 89999999988777 899999988866654444
No 266
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=95.89 E-value=0.018 Score=54.11 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=46.4
Q ss_pred CCCEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCc
Q 018327 274 PGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV 328 (358)
Q Consensus 274 ~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~ 328 (358)
..+.+...+.|.||++..++.++++++|++|.++.++.||++|.|.+ +.+..+.
T Consensus 272 ~~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisG-v~~~~~~ 325 (414)
T PF07959_consen 272 TPSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISG-VDINSWS 325 (414)
T ss_pred cccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEEC-Ccccccc
Confidence 44567888899999999999999999999999999999999999998 6554443
No 267
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=95.57 E-value=0.18 Score=40.28 Aligned_cols=100 Identities=24% Similarity=0.255 Sum_probs=66.7
Q ss_pred cccCCcc-hHHHHHHHHHHCC--CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327 26 VEFANKP-MILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~ 102 (358)
+|.-|++ .|..+|+.+.+.. ..+++|+-+...+...+.+.++.......+.+....+..|.+.+...+.+.. ..+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~--~~~ 80 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHA--KGD 80 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhc--CCC
Confidence 5665664 8889999998875 4566666555555666666665433223344455556678888888888877 443
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327 103 EPFFVLNSDVISEYP-FAEMIEFHKAH 128 (358)
Q Consensus 103 ~~~lv~~gD~i~~~~-l~~~~~~~~~~ 128 (358)
.++++.+|.+...+ +..++..+.+.
T Consensus 81 -~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 81 -IVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred -EEEEECCCCCcChHHHHHHHHHhccC
Confidence 88999999977655 67775555443
No 268
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=95.45 E-value=0.024 Score=48.00 Aligned_cols=108 Identities=23% Similarity=0.339 Sum_probs=49.7
Q ss_pred CeEEEEecCCc---cccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEE
Q 018327 1 MKALILVGGFG---TRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIIC 77 (358)
Q Consensus 1 m~avIla~G~g---~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~ 77 (358)
|++||+.-..+ |||.+.- +..--.=.-+-|+..++..+.. ++ +++|+.. +.+..+-. ...++.+..
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L---~~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d--~~v~~~a~---~~~g~~vl~ 69 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVL---SPEEREALALAMLRDVLAALRA--VD-VVVVSRD--PEVAALAR---ARLGAEVLP 69 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS----HHHHHHHHHHHHHHHHHHHHH---S-EEEEES----S-TTTTT------SSEEEE
T ss_pred CeEEEEcCCCCccccccCccC---CHHHHHHHHHHHHHHHHHHHHh--cC-eEEeccc--hhhhhhhh---hccCCeEec
Confidence 88999886555 6776531 1111111134588999999977 66 6666553 22221111 144666543
Q ss_pred eccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHH
Q 018327 78 SQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFH 125 (358)
Q Consensus 78 ~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~ 125 (358)
+. ..|.-.++.++.... .. ++++++++|+ +...++..+++..
T Consensus 70 --d~-~~gLN~Al~~a~~~~--~~-~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 70 --DP-GRGLNAALNAALAAA--GD-DPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp ------S-HHHHHHHHHH-H-----S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred --CC-CCCHHHHHHHHHhcc--CC-CceEEeecCCccCCHHHHHHHHhcc
Confidence 22 457777888774333 33 4999999999 5556677777653
No 269
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=95.37 E-value=0.31 Score=39.82 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=62.1
Q ss_pred CeEEEEec---CCccccCcCCC-CCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEE
Q 018327 1 MKALILVG---GFGTRLRPLTL-SVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKII 76 (358)
Q Consensus 1 m~avIla~---G~g~rl~~~t~-~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~ 76 (358)
|.+||+-. +.=+||.|.-+ +.-+.|+ .-|+..++..+... +.+|.|++.. +++..+..+ .++
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~-~~~i~Vvtpd--e~~~~~a~~------~~v- 66 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV-LGEITVVTPD--EEVLVPATK------LEV- 66 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh-cCCceEEcCC--hHhhhhccc------cee-
Confidence 77888654 55677776522 1111111 24788888888765 7889988875 233222222 122
Q ss_pred EeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--eeccCHHHHHHHH
Q 018327 77 CSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFH 125 (358)
Q Consensus 77 ~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i~~~~l~~~~~~~ 125 (358)
... .+.-.++.++.+.+... +.++|+.+|+ +...+++++++..
T Consensus 67 -l~d---~dLN~Ai~aa~~~~~~p--~~v~vvmaDLPLl~~~~i~~~~~~~ 111 (210)
T COG1920 67 -LAD---PDLNTAINAALDEIPLP--SEVIVVMADLPLLSPEHIERALSAA 111 (210)
T ss_pred -eec---cchHHHHHHHHhhCCCC--cceEEEecccccCCHHHHHHHHHhc
Confidence 111 22456788888777432 3799999999 3444577777653
No 270
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=95.14 E-value=0.37 Score=41.66 Aligned_cols=107 Identities=9% Similarity=0.124 Sum_probs=69.4
Q ss_pred cccCCcc-hHHHHHHHHHHCCCC----EEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCC
Q 018327 26 VEFANKP-MILHQIEALKAVGVT----EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDD 100 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l~~~gi~----~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~ 100 (358)
+|.-|.+ .|..+|+++.+.... +++||.+...+...+.++++.......+.........|.+.++..+.+.. .
T Consensus 7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a--~ 84 (241)
T cd06427 7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFA--R 84 (241)
T ss_pred EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhc--C
Confidence 4555554 788899999876432 45565555556666666665322234555544445557788888888776 4
Q ss_pred CCCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEEE
Q 018327 101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIM 135 (358)
Q Consensus 101 ~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~~ 135 (358)
. +.++++.+|.....+ +..+++.+.+...+..++
T Consensus 85 g-d~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 85 G-EYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred C-CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 4 388899999987766 788888876543444333
No 271
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.03 E-value=0.47 Score=39.50 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=65.3
Q ss_pred ccccCCcc---hHHHHHHHHHHCCC--CEEEEEeccC-hHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327 25 LVEFANKP---MILHQIEALKAVGV--TEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI 98 (358)
Q Consensus 25 llpi~g~p---li~~~l~~l~~~gi--~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~ 98 (358)
++|..|.. .|+.+|+++.+... .+++||-+.. .+.+.+.++++.+..+ +.+.......|.+.+...+....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a- 79 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHC- 79 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhc-
Confidence 45666553 89999999988752 4555554443 4566666666655444 33333344467788887777765
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327 99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAH 128 (358)
Q Consensus 99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~ 128 (358)
.. +.++++.+|.+...+ ++.+++.+.++
T Consensus 80 -~g-d~i~~lD~Dd~~~~~~l~~~~~~~~~~ 108 (201)
T cd04195 80 -TY-DWVARMDTDDISLPDRFEKQLDFIEKN 108 (201)
T ss_pred -CC-CEEEEeCCccccCcHHHHHHHHHHHhC
Confidence 34 388899999977766 78888876543
No 272
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.73 E-value=0.63 Score=37.02 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=64.3
Q ss_pred cccCCcc-hHHHHHHHHHHCC--CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327 26 VEFANKP-MILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~ 102 (358)
+|.-|++ ++..+++++.+.. ..+++|+-+...+...+.+.++.. .+.+.......|.+.+...+.+.. ..+
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~~~~g~~~a~n~~~~~~--~~~ 76 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNGENLGFGAGNNQGIREA--KGD 76 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecCCCcChHHHhhHHHhhC--CCC
Confidence 4555554 8999999998764 456666666555666666665322 333344455668888888888877 443
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327 103 EPFFVLNSDVISEYP-FAEMIEFHKAH 128 (358)
Q Consensus 103 ~~~lv~~gD~i~~~~-l~~~~~~~~~~ 128 (358)
.++++..|.+...+ +..+.+.+.+.
T Consensus 77 -~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 77 -YVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred -EEEEECCCcEECccHHHHHHHHHHhC
Confidence 78888888877665 77777765543
No 273
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=94.41 E-value=0.54 Score=38.44 Aligned_cols=106 Identities=13% Similarity=0.156 Sum_probs=68.3
Q ss_pred cccCCcc-hHHHHHHHHHHCC----CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCC
Q 018327 26 VEFANKP-MILHQIEALKAVG----VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDD 100 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l~~~g----i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~ 100 (358)
+|..|.+ .|..+|+.+.+.. ..+++|+-+...+...+.++++..... .+.+....+..|.+.+...+.+.. .
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a--~ 79 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAA--R 79 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHh--c
Confidence 4555554 7788888887773 566666665555556666665443332 223444555668888888888877 4
Q ss_pred CCCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEEE
Q 018327 101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIM 135 (358)
Q Consensus 101 ~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~~ 135 (358)
. +.++++.+|.....+ +..+++.....+.++.+.
T Consensus 80 g-d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 80 G-DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred C-CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 4 388999999866655 788888755555444433
No 274
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=94.20 E-value=0.56 Score=39.53 Aligned_cols=106 Identities=11% Similarity=0.101 Sum_probs=65.6
Q ss_pred cccCCcc-hHHHHHHHHHHC------CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327 26 VEFANKP-MILHQIEALKAV------GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI 98 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l~~~------gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~ 98 (358)
+|.-|.. .|..+|+.+.+. ..-+++|+-+...+...+.++++....+..+.+.......|.+.++..+.+..
T Consensus 3 ip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a- 81 (211)
T cd04188 3 IPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAA- 81 (211)
T ss_pred EcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHh-
Confidence 4454433 667777777654 23456665554555666666665444333234444555568888898888877
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEE
Q 018327 99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASI 134 (358)
Q Consensus 99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~ 134 (358)
.. +.++++.+|.....+ +..+++...+.+.++.+
T Consensus 82 -~g-d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 116 (211)
T cd04188 82 -RG-DYILFADADLATPFEELEKLEEALKTSGYDIAI 116 (211)
T ss_pred -cC-CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 44 388999999977655 78888775554444433
No 275
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=93.88 E-value=0.89 Score=39.36 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=69.2
Q ss_pred CCCCCC--cccccCCcc-hHHHHHHHHHHCCC----CEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHH
Q 018327 18 TLSVPK--PLVEFANKP-MILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPL 90 (358)
Q Consensus 18 t~~~pK--~llpi~g~p-li~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl 90 (358)
....|+ -++|..|.. .|..+|+.+..... -+++|+.+...+...+.++++... + +.+.......|.+.++
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~--v~~i~~~~~~g~~~a~ 101 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK-G--VKLLRFPERRGKAAAL 101 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC-c--EEEEEcCCCCChHHHH
Confidence 344555 566776665 78888988877642 256666666556677777765433 3 3333444556778888
Q ss_pred HHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHH
Q 018327 91 ALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHK 126 (358)
Q Consensus 91 ~~~~~~i~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~ 126 (358)
..+.+.. .. +.++++.+|.+...+ ++.+++.+.
T Consensus 102 n~gi~~a--~~-d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 102 NRALALA--TG-EIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred HHHHHHc--CC-CEEEEEccccCcCHHHHHHHHHHhc
Confidence 8888777 33 489999999977765 788888764
No 276
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.77 E-value=0.85 Score=38.18 Aligned_cols=100 Identities=16% Similarity=0.175 Sum_probs=63.9
Q ss_pred cccCCcc-hHHHHHHHHHHCCC--CEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327 26 VEFANKP-MILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~ 102 (358)
+|.-|.+ .|..+|+++.+... -+++|+-+...+...+.++++....+..+.+.......|.+.++..+.... ..
T Consensus 4 Ip~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~--~g- 80 (214)
T cd04196 4 MATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAA--DG- 80 (214)
T ss_pred EEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhC--CC-
Confidence 4555555 78899999887653 245555444445566666665544433444455555667777777776555 34
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327 103 EPFFVLNSDVISEYP-FAEMIEFHKAH 128 (358)
Q Consensus 103 ~~~lv~~gD~i~~~~-l~~~~~~~~~~ 128 (358)
+.++++..|.+...+ +..+++...+.
T Consensus 81 ~~v~~ld~Dd~~~~~~l~~~~~~~~~~ 107 (214)
T cd04196 81 DYVFFCDQDDIWLPDKLERLLKAFLKD 107 (214)
T ss_pred CEEEEECCCcccChhHHHHHHHHHhcC
Confidence 388888889876655 78888774443
No 277
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=93.23 E-value=1 Score=38.16 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=65.6
Q ss_pred cccCCcc-hHHHHHHHHHHCC---CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCC
Q 018327 26 VEFANKP-MILHQIEALKAVG---VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT 101 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l~~~g---i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~ 101 (358)
+|.-|.+ .|..+|+.+...- .-+++||-+...+...+.++++.+... .+.+.......|.+.++..+.+.. ..
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~~a--~g 79 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFKAA--RG 79 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCC-ceEEEecCCCCChHHHHHHHHHHc--CC
Confidence 4555554 7888888887653 345555554444556666666544332 223344455568888888888777 34
Q ss_pred CCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeE
Q 018327 102 GEPFFVLNSDVISEYP-FAEMIEFHKAHGGEAS 133 (358)
Q Consensus 102 ~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~ 133 (358)
+.++++.+|.....+ +..+++.....+.++.
T Consensus 80 -d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 80 -DVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred -CEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 388899999876655 7888887555544443
No 278
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=93.18 E-value=1.9 Score=36.74 Aligned_cols=98 Identities=13% Similarity=0.190 Sum_probs=63.8
Q ss_pred ccccCCcc--hHHHHHHHHHHCCCC----EEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCC-CchHHHHHHhhc
Q 018327 25 LVEFANKP--MILHQIEALKAVGVT----EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLG-TAGPLALARDKL 97 (358)
Q Consensus 25 llpi~g~p--li~~~l~~l~~~gi~----~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g-~~~sl~~~~~~i 97 (358)
.+|.-|.+ ++..+|+.+...... +++||-+...+...+.++++.....+.+. ......| .+.++..+.+..
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~n~~~~~a 83 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYL--TRPDNRHAKAGNLNNALAHT 83 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEE--EeCCCCCCcHHHHHHHHHhC
Confidence 35666653 789999999887643 56666665667777777776543333332 2222223 455566777665
Q ss_pred cCCCCCcEEEEeCCeeeccC-HHHHHHHHHh
Q 018327 98 IDDTGEPFFVLNSDVISEYP-FAEMIEFHKA 127 (358)
Q Consensus 98 ~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~ 127 (358)
..+ .++++..|.+.+.+ +..+++.+.+
T Consensus 84 --~~d-~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 84 --TGD-FVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred --CCC-EEEEEccccCcCccHHHHHHHHHhc
Confidence 443 88899999988777 7888887765
No 279
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.16 E-value=2 Score=35.27 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=60.1
Q ss_pred cccCCcc-hHHHHHHHHHHCCCC--EEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327 26 VEFANKP-MILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~ 102 (358)
+|.-|.+ .|+.+|+.+.+.... +++||-+...+...+.++++... +.+....+..|.+.++..+.+.. ..
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~----~~~~~~~~~~g~~~a~n~~~~~a--~~- 76 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK----ITYWISEPDKGIYDAMNKGIALA--TG- 76 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh----cEEEEecCCcCHHHHHHHHHHHc--CC-
Confidence 3444444 889999999877655 45555443445666666664332 22223344557788888888776 33
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327 103 EPFFVLNSDVISEYP-FAEMIEFHKAH 128 (358)
Q Consensus 103 ~~~lv~~gD~i~~~~-l~~~~~~~~~~ 128 (358)
+.++++..|.....+ +..++..+.+.
T Consensus 77 ~~v~~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 77 DIIGFLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred CEEEEeCCCcccCchHHHHHHHHHHhC
Confidence 388889999866554 77777554443
No 280
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=92.12 E-value=1.7 Score=37.33 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=63.0
Q ss_pred cccCCc-chHHHHHHHHHHCCC----CEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCC
Q 018327 26 VEFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDD 100 (358)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~ 100 (358)
+|.-|. +.+..+|+.+.+... -+++|+-+...++..+.++.+.... ..+.+... ...|.+.++..+.+.. .
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~-~~v~~i~~-~~~~~~~a~N~g~~~a--~ 81 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKD-PRIRLIDN-PKRIQSAGLNIGIRNS--R 81 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcC-CeEEEEeC-CCCCchHHHHHHHHHh--C
Confidence 344444 478888999987654 3566666655666777777654432 23333333 3346667777777776 3
Q ss_pred CCCcEEEEeCCeeeccC-HHHHHHHHHhcC
Q 018327 101 TGEPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (358)
Q Consensus 101 ~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~ 129 (358)
. +.++++.+|.....+ +..+++.+.+.+
T Consensus 82 ~-d~v~~lD~D~~~~~~~l~~~~~~~~~~~ 110 (249)
T cd02525 82 G-DIIIRVDAHAVYPKDYILELVEALKRTG 110 (249)
T ss_pred C-CEEEEECCCccCCHHHHHHHHHHHhcCC
Confidence 4 388899999977655 788887665443
No 281
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.94 E-value=1.9 Score=35.83 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=60.9
Q ss_pred ccCCc-chHHHHHHHHHHCCC--CEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCC
Q 018327 27 EFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGE 103 (358)
Q Consensus 27 pi~g~-pli~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~ 103 (358)
|--|. ..|..+|+.+.+... .+++|+-+...+...+.++++....+ +.+....+..|.+.++-.+.+.......+
T Consensus 4 ~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~~n~g~~~~~n~~~~~a~~~~~d 81 (202)
T cd04185 4 VTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLPENLGGAGGFYEGVRRAYELGYD 81 (202)
T ss_pred EeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECccccchhhHHHHHHHHHhccCCC
Confidence 34344 378999999987642 35666555555677777777544433 33444444556666666555544222234
Q ss_pred cEEEEeCCeeeccC-HHHHHHHHH
Q 018327 104 PFFVLNSDVISEYP-FAEMIEFHK 126 (358)
Q Consensus 104 ~~lv~~gD~i~~~~-l~~~~~~~~ 126 (358)
.++++..|.+...+ ++.+++...
T Consensus 82 ~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 82 WIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred EEEEeCCCCCcChHHHHHHHHHHh
Confidence 78888999988766 677777665
No 282
>PRK11204 N-glycosyltransferase; Provisional
Probab=91.93 E-value=1.9 Score=40.70 Aligned_cols=100 Identities=19% Similarity=0.194 Sum_probs=66.6
Q ss_pred ccccCCc-chHHHHHHHHHHCCC--CEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCC
Q 018327 25 LVEFANK-PMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT 101 (358)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~ 101 (358)
++|.-|. ..|..+++++.+..- -+++|+-+...++..+.++++.+... .+.+....+..|.+.++..+.+.. ..
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~-~v~~i~~~~n~Gka~aln~g~~~a--~~ 135 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIP-RLRVIHLAENQGKANALNTGAAAA--RS 135 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-cEEEEEcCCCCCHHHHHHHHHHHc--CC
Confidence 4566555 489999999887652 35666555455666666666544322 234444344567888888888776 44
Q ss_pred CCcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327 102 GEPFFVLNSDVISEYP-FAEMIEFHKAH 128 (358)
Q Consensus 102 ~~~~lv~~gD~i~~~~-l~~~~~~~~~~ 128 (358)
|.++++.+|.+...+ +.++++.+.+.
T Consensus 136 -d~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 136 -EYLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred -CEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 389999999987766 78888877554
No 283
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=91.89 E-value=0.55 Score=34.61 Aligned_cols=82 Identities=13% Similarity=0.166 Sum_probs=35.7
Q ss_pred EECCCcEECCCcEECCCCEECCCcEEe-eeEECCCcEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCceEEc
Q 018327 259 QIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN 337 (358)
Q Consensus 259 ~i~~~~~i~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~~i~ 337 (358)
.|++++.+.++......+.|... +. +......+.|+.++.+.+.+-.+++.|... +.......+...|...+.+.
T Consensus 4 ~I~~~~~i~G~i~~~~~v~i~G~--v~G~i~~~g~v~i~~~~~v~G~i~~~~~~i~G~--v~G~v~a~~~v~i~~~~~v~ 79 (101)
T PF04519_consen 4 IIGKGTKIEGDISSDGDVRIDGR--VEGNIKAEGKVKIGGNGEVKGDIKADDVIISGS--VDGNVEASGKVEIYGTARVE 79 (101)
T ss_pred EECCCCEEEEEEEECcEEEEEEE--EEEEEEEceEEEEcCCCEEEEEEEEeEEEEcCE--EeEEEEECceEEEeCCEEEE
Confidence 34444444434444444444332 33 333333555555555555544444444322 33323333444455555554
Q ss_pred CcEEccC
Q 018327 338 GGVVLPH 344 (358)
Q Consensus 338 ~~~v~~~ 344 (358)
|.+..+.
T Consensus 80 G~i~~~~ 86 (101)
T PF04519_consen 80 GDITAGK 86 (101)
T ss_pred EEEEECE
Confidence 4443333
No 284
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=91.64 E-value=1.8 Score=35.24 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=60.1
Q ss_pred cccCCcc-hHHHHHHHHHHC-----CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccC
Q 018327 26 VEFANKP-MILHQIEALKAV-----GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLID 99 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l~~~-----gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~ 99 (358)
+|.-|.+ .|..+++.+... ..-+++|+-+...+...+.++++..... .+.+....+..|.+.++..+....
T Consensus 3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~i~~i~~~~n~G~~~a~n~g~~~a-- 79 (181)
T cd04187 3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDP-RVKVIRLSRNFGQQAALLAGLDHA-- 79 (181)
T ss_pred EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEEecCCCCcHHHHHHHHHhc--
Confidence 3444444 455555555332 2336666666555666666666543322 333344445568888888887776
Q ss_pred CCCCcEEEEeCCeeeccC-HHHHHHHHHhcCCee
Q 018327 100 DTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEA 132 (358)
Q Consensus 100 ~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~ 132 (358)
.. +.++++.+|.....+ ++.+++. .+.+.++
T Consensus 80 ~~-d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~ 111 (181)
T cd04187 80 RG-DAVITMDADLQDPPELIPEMLAK-WEEGYDV 111 (181)
T ss_pred CC-CEEEEEeCCCCCCHHHHHHHHHH-HhCCCcE
Confidence 33 388999999977655 7788776 3334443
No 285
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=91.34 E-value=3.2 Score=37.20 Aligned_cols=102 Identities=13% Similarity=0.139 Sum_probs=63.2
Q ss_pred cccCCc--chHHHHHHHHHHCCC----CEEEEEeccChHHHHHHHHh-hhhccCcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327 26 VEFANK--PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKE-FEAKLGIKIICSQETEPLGTAGPLALARDKLI 98 (358)
Q Consensus 26 lpi~g~--pli~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~-~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~ 98 (358)
+|.-|. ..|..+|+++.+... .+|+||=+...+.....+.+ ........+.++......|-+.+.-.+.+..
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A- 82 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAA- 82 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHc-
Confidence 345444 488899999876542 26666655544544444433 1112222344444455567777777777666
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCC
Q 018327 99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGG 130 (358)
Q Consensus 99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~ 130 (358)
..+ .++++.+|.....+ +..+++.+.+...
T Consensus 83 -~gd-~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 83 -TGD-VLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred -cCC-EEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 443 89999999977666 8999988776543
No 286
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=91.14 E-value=2.9 Score=35.75 Aligned_cols=101 Identities=21% Similarity=0.277 Sum_probs=59.7
Q ss_pred ccccCCc-c-hHHHHHHHHHHCCC--CEEEEEeccChHH-HHHHHHhhhhccCcEEEEeccCCcCC-CchHHHHHHhhcc
Q 018327 25 LVEFANK-P-MILHQIEALKAVGV--TEVVLAINYQPEV-MLNFLKEFEAKLGIKIICSQETEPLG-TAGPLALARDKLI 98 (358)
Q Consensus 25 llpi~g~-p-li~~~l~~l~~~gi--~~i~vv~~~~~~~-i~~~l~~~~~~~~~~i~~~~~~~~~g-~~~sl~~~~~~i~ 98 (358)
++|.-|. | +|..+|+.+.+... -+++||-+...+. ..+.++++.+..+..+.++......| .+.++-.+.+...
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~ 82 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTA 82 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcC
Confidence 3566665 3 79999999988763 3555555443332 22333333322333343333333345 3677777777663
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHHH
Q 018327 99 DDTGEPFFVLNSDVISEYP-FAEMIEFHK 126 (358)
Q Consensus 99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~ 126 (358)
... +.++++..|.....+ +..+++.+.
T Consensus 83 ~~~-d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 83 PDA-EIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred CCC-CEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 223 388999999977666 788887764
No 287
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=91.04 E-value=4.2 Score=33.22 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=62.1
Q ss_pred ccccCCc-chHHHHHHHHHHCCC----CEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhcc-
Q 018327 25 LVEFANK-PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI- 98 (358)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~- 98 (358)
++|.-|. ..|..+|+.+.+... .+++|+.+...+...+.++++ +..+.........|.+.++..+.....
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~----~~~~~~~~~~~~~gk~~aln~g~~~a~~ 77 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA----GATVLERHDPERRGKGYALDFGFRHLLN 77 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc----CCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 3456554 488888999877643 356666666556666665543 233333223344577777777776652
Q ss_pred -CCCCCcEEEEeCCeeeccC-HHHHHHHHHh
Q 018327 99 -DDTGEPFFVLNSDVISEYP-FAEMIEFHKA 127 (358)
Q Consensus 99 -~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~ 127 (358)
....+.++++.+|.....+ +..++..+.+
T Consensus 78 ~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 78 LADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred cCCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 1123378899999988766 7888877654
No 288
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=90.81 E-value=3.8 Score=34.86 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=60.4
Q ss_pred chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCC
Q 018327 32 PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 111 (358)
Q Consensus 32 pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD 111 (358)
+.|..+|+.+.+....+++||.+...+...+.+....+...+.+. . .+..|...++..+.+.. ..+ .++++.+|
T Consensus 14 ~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~--~-~~~~g~~~a~n~g~~~a--~~d-~v~~lD~D 87 (235)
T cd06434 14 DVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKYGGIFVI--T-VPHPGKRRALAEGIRHV--TTD-IVVLLDSD 87 (235)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccCCcEEEE--e-cCCCChHHHHHHHHHHh--CCC-EEEEECCC
Confidence 589999999988766777777776666666665432222222332 2 23347777777777666 443 88999999
Q ss_pred eeeccC-HHHHHHHHH
Q 018327 112 VISEYP-FAEMIEFHK 126 (358)
Q Consensus 112 ~i~~~~-l~~~~~~~~ 126 (358)
.....+ ++.+++.+.
T Consensus 88 ~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 88 TVWPPNALPEMLKPFE 103 (235)
T ss_pred ceeChhHHHHHHHhcc
Confidence 988776 788887765
No 289
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=90.57 E-value=14 Score=34.23 Aligned_cols=60 Identities=30% Similarity=0.447 Sum_probs=40.4
Q ss_pred EecCCccccCcCCCCCCCccccc-CCcchHHH---HHHHHHHC-CCC-EEEEEecc-ChHHHHHHHHhhh
Q 018327 6 LVGGFGTRLRPLTLSVPKPLVEF-ANKPMILH---QIEALKAV-GVT-EVVLAINY-QPEVMLNFLKEFE 68 (358)
Q Consensus 6 la~G~g~rl~~~t~~~pK~llpi-~g~pli~~---~l~~l~~~-gi~-~i~vv~~~-~~~~i~~~l~~~~ 68 (358)
|-||.|+-|+= ..||.+.++ .|...++- +++.|.+. +++ ..++.-+. ..++..++++++.
T Consensus 109 LNGGlGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~ 175 (498)
T KOG2638|consen 109 LNGGLGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA 175 (498)
T ss_pred ecCCcCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc
Confidence 77999999987 789999999 57776654 45555433 333 23444443 3577888888753
No 290
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.17 E-value=3.1 Score=35.16 Aligned_cols=100 Identities=15% Similarity=0.217 Sum_probs=58.4
Q ss_pred cccCCcc-hHHHHHHHHHHCCC----CEEEEEeccChHHHHHHHHhhh-hccCcEEEEeccC--CcCCCchHHHHHHhhc
Q 018327 26 VEFANKP-MILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFE-AKLGIKIICSQET--EPLGTAGPLALARDKL 97 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l~~~gi----~~i~vv~~~~~~~i~~~l~~~~-~~~~~~i~~~~~~--~~~g~~~sl~~~~~~i 97 (358)
+|..|.+ .|..+|+.+..... -+|+||-+...+...+.+. +. ...+..+...... ...|...++..+....
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~ 81 (229)
T cd04192 3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSRVSISGKKNALTTAIKAA 81 (229)
T ss_pred EEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccCcccchhHHHHHHHHHHh
Confidence 5665555 78999999877643 2455555444444444444 11 1222333333332 2345556666666554
Q ss_pred cCCCCCcEEEEeCCeeeccC-HHHHHHHHHhcC
Q 018327 98 IDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (358)
Q Consensus 98 ~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~ 129 (358)
.. +.++++.+|.+...+ ++.+++.+.+..
T Consensus 82 --~~-d~i~~~D~D~~~~~~~l~~l~~~~~~~~ 111 (229)
T cd04192 82 --KG-DWIVTTDADCVVPSNWLLTFVAFIQKEQ 111 (229)
T ss_pred --cC-CEEEEECCCcccCHHHHHHHHHHhhcCC
Confidence 33 388899999977766 788888665543
No 291
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=90.03 E-value=3.7 Score=35.44 Aligned_cols=107 Identities=12% Similarity=0.154 Sum_probs=63.7
Q ss_pred ccccCCc-chHHHHHHHHHHCC----CCEEEEEeccChHHHHHHHHhhhhccC-cEEEEeccCCcCCCchHHHHHHhhcc
Q 018327 25 LVEFANK-PMILHQIEALKAVG----VTEVVLAINYQPEVMLNFLKEFEAKLG-IKIICSQETEPLGTAGPLALARDKLI 98 (358)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~g----i~~i~vv~~~~~~~i~~~l~~~~~~~~-~~i~~~~~~~~~g~~~sl~~~~~~i~ 98 (358)
.+|.-|. ..|..+++.+.+.- --+++|+-+...+...+.++++.+.++ ..+.........|.+.++..+....
T Consensus 14 vIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a- 92 (243)
T PLN02726 14 IVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHA- 92 (243)
T ss_pred EEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHc-
Confidence 3444444 46677776665421 225555555445666666666544332 2343444444567777888777766
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEE
Q 018327 99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASI 134 (358)
Q Consensus 99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~ 134 (358)
..+ .++++.+|...+.+ +..+++...+.+.++..
T Consensus 93 -~g~-~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 127 (243)
T PLN02726 93 -SGD-FVVIMDADLSHHPKYLPSFIKKQRETGADIVT 127 (243)
T ss_pred -CCC-EEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence 343 88899999976654 78888876655554443
No 292
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=89.94 E-value=3.3 Score=33.58 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=58.5
Q ss_pred cccCCcc-hHHHHHHHHHHCC--CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC-CcCCCchHHHHHHhhccCCC
Q 018327 26 VEFANKP-MILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET-EPLGTAGPLALARDKLIDDT 101 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~-~~~g~~~sl~~~~~~i~~~~ 101 (358)
+|.-|.+ .+..+|+++.+.. ..+++|+-+...+...+.++++....+..+...... ...+.+.+...+.+.. ..
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a--~g 80 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA--KG 80 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHh--cC
Confidence 4555555 7889999997753 346666655556667777776544333333333222 2234445555555555 33
Q ss_pred CCcEEEEeCCeeeccC-HHHHHHHH
Q 018327 102 GEPFFVLNSDVISEYP-FAEMIEFH 125 (358)
Q Consensus 102 ~~~~lv~~gD~i~~~~-l~~~~~~~ 125 (358)
+.++++..|.+...+ +..+++.+
T Consensus 81 -~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 81 -DYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred -CEEEEEcCCcccCHHHHHHHHHHh
Confidence 388899999977665 67777655
No 293
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=89.40 E-value=5.8 Score=32.86 Aligned_cols=97 Identities=11% Similarity=0.178 Sum_probs=55.6
Q ss_pred cccCC-cchHHHHHHHHHHCC--CCEEEEEeccChHHHHHHHHhhhhccC-cEEEEeccCCcCCC---chHHHHHHhhcc
Q 018327 26 VEFAN-KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLG-IKIICSQETEPLGT---AGPLALARDKLI 98 (358)
Q Consensus 26 lpi~g-~pli~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~-~~i~~~~~~~~~g~---~~sl~~~~~~i~ 98 (358)
+|.-| .+.|..+|+++.+.. .-+++||.+...+...+.++++.+.+. ..+.+.......|. +.++..+.+..
T Consensus 7 ip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a- 85 (196)
T cd02520 7 KPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEA- 85 (196)
T ss_pred EecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhC-
Confidence 45543 347888999988754 235666666555555566655433322 33333333322232 33444555554
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHH
Q 018327 99 DDTGEPFFVLNSDVISEYP-FAEMIEFH 125 (358)
Q Consensus 99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~ 125 (358)
.. +.++++.+|.....+ +..+++.+
T Consensus 86 -~~-d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 86 -RY-DILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred -CC-CEEEEECCCceEChhHHHHHHHHh
Confidence 33 388888999977665 77777764
No 294
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=89.36 E-value=3.7 Score=39.25 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=64.8
Q ss_pred cccccCCcc-hHHHHHHHHHHCCC--CEEEEEeccChHHHHHHHHhhhhcc-CcEEEEeccCCcCCCchHHHHHHhhccC
Q 018327 24 PLVEFANKP-MILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLID 99 (358)
Q Consensus 24 ~llpi~g~p-li~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~-~~~i~~~~~~~~~g~~~sl~~~~~~i~~ 99 (358)
-++|..|.+ .|..+++++.+..- -+++++-+...++..+.++++.+.. .+.+. ...+..|.+.++..+....
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv--~~~~n~Gka~AlN~gl~~a-- 154 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVI--HLAHNQGKAIALRMGAAAA-- 154 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEE--EeCCCCCHHHHHHHHHHhC--
Confidence 566776665 78899999887642 3666665555555666666544332 34433 3233457777777777665
Q ss_pred CCCCcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327 100 DTGEPFFVLNSDVISEYP-FAEMIEFHKAH 128 (358)
Q Consensus 100 ~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~ 128 (358)
.. |.++++.+|.+.+.+ +..+++.+.+.
T Consensus 155 ~~-d~iv~lDAD~~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 155 RS-EYLVCIDGDALLDKNAVPYLVAPLIAN 183 (444)
T ss_pred CC-CEEEEECCCCCcCHHHHHHHHHHHHhC
Confidence 34 389999999988766 77887776544
No 295
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=88.18 E-value=5.8 Score=37.86 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=64.5
Q ss_pred ccccCCcc-hHHHHHHHHHHCCC--C--EEEEEeccChHHHHHHHHhhhhcc-CcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327 25 LVEFANKP-MILHQIEALKAVGV--T--EVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLI 98 (358)
Q Consensus 25 llpi~g~p-li~~~l~~l~~~gi--~--~i~vv~~~~~~~i~~~l~~~~~~~-~~~i~~~~~~~~~g~~~sl~~~~~~i~ 98 (358)
++|.-|.. .|..+++++.+... + +|+|+-+...++..+.++++.+.. ++.+... ....|-+.++-.+.+..
T Consensus 54 IIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~--~~~~Gka~AlN~gl~~s- 130 (439)
T TIGR03111 54 IIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYM--NSDQGKAKALNAAIYNS- 130 (439)
T ss_pred EEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEe--CCCCCHHHHHHHHHHHc-
Confidence 45665544 88999999987753 2 355555545566666666543332 3444333 23357788888888776
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327 99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAH 128 (358)
Q Consensus 99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~ 128 (358)
.. +.++++.+|.+.+.+ ++.+++.+.+.
T Consensus 131 -~g-~~v~~~DaD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 131 -IG-KYIIHIDSDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred -cC-CEEEEECCCCCcChHHHHHHHHHHHhC
Confidence 34 388899999988766 78888877644
No 296
>PRK10073 putative glycosyl transferase; Provisional
Probab=87.19 E-value=8.4 Score=35.13 Aligned_cols=105 Identities=9% Similarity=0.067 Sum_probs=64.2
Q ss_pred ccccCCc-chHHHHHHHHHHCCCC--EEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCC
Q 018327 25 LVEFANK-PMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT 101 (358)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~ 101 (358)
.+|.-|. ..|..+|+++.+.... +++||-+...+...+.++++..... .+.+..+ +..|.+.+.-.+.+.. .+
T Consensus 11 IIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~-~i~vi~~-~n~G~~~arN~gl~~a--~g 86 (328)
T PRK10073 11 IIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYP-HVRLLHQ-ANAGVSVARNTGLAVA--TG 86 (328)
T ss_pred EEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEEC-CCCChHHHHHHHHHhC--CC
Confidence 3566454 4899999999887543 4444444344455555555433321 2333333 3457777777777766 44
Q ss_pred CCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEE
Q 018327 102 GEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASI 134 (358)
Q Consensus 102 ~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~ 134 (358)
+ .++++.+|.....+ +..+++...+.+.+..+
T Consensus 87 ~-yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 87 K-YVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred C-EEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 3 88999999976655 78888876655555443
No 297
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=87.03 E-value=9.9 Score=31.32 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHCCCC--EEEEEeccChH-HHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEE
Q 018327 32 PMILHQIEALKAVGVT--EVVLAINYQPE-VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL 108 (358)
Q Consensus 32 pli~~~l~~l~~~gi~--~i~vv~~~~~~-~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~ 108 (358)
..+..+|+++.+.... +++|+-+...+ .+...++.+.... ..+.+.......|.+.+.-.+.+.. .. +.++++
T Consensus 15 ~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~a~n~g~~~a--~~-d~i~~l 90 (202)
T cd04184 15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQD-PRIKVVFREENGGISAATNSALELA--TG-EFVALL 90 (202)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcC-CCEEEEEcccCCCHHHHHHHHHHhh--cC-CEEEEE
Confidence 6788889998876533 55555443323 3444444432221 1233333444557777777777766 33 388888
Q ss_pred eCCeeeccC-HHHHHHHHHh
Q 018327 109 NSDVISEYP-FAEMIEFHKA 127 (358)
Q Consensus 109 ~gD~i~~~~-l~~~~~~~~~ 127 (358)
..|.....+ +..+++.+..
T Consensus 91 d~D~~~~~~~l~~~~~~~~~ 110 (202)
T cd04184 91 DHDDELAPHALYEVVKALNE 110 (202)
T ss_pred CCCCcCChHHHHHHHHHHHh
Confidence 999977766 7888887743
No 298
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=86.67 E-value=5.2 Score=31.66 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=53.4
Q ss_pred ccCCcEEecceEECCCCEECCCcEECCCcEECCC-CEECCCcEEeeeEECCCcEECCCcEEeccEEccCCEECCccEEcC
Q 018327 242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPG-CVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN 320 (358)
Q Consensus 242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~-~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ig~~~~i~~ 320 (358)
+..++.+.+.......-.|.. .+. +.+..++ +.|++..+|...+.-+...| ++.+..+....+.+.|...+++.+
T Consensus 26 i~~g~~f~G~l~f~~~l~IdG--~~~-G~v~s~~~iiv~~~g~V~gei~a~~~iv-~G~v~Gni~~a~~Vei~~~g~v~G 101 (146)
T COG1664 26 IGAGTTFKGELVFEGPLRIDG--TFE-GDVHSDGGIVVGESGRVEGEIEAEHLIV-EGKVEGNILAAERVELYPGGRVIG 101 (146)
T ss_pred EecCCEEEEEEEecceEEEeE--EEE-EEEEeCCCEEECCccEEEEEEEeCEEEE-eeEEEEEEEEeeEEEEcCCcEEee
Confidence 344444444444444333322 232 3333333 77777777765555555555 556666666666777777776666
Q ss_pred ccEECCCcEECCceEEcCcEE
Q 018327 321 MTILGEDVHVCDEIYSNGGVV 341 (358)
Q Consensus 321 ~~~i~~~~~i~~~~~i~~~~v 341 (358)
-+=++...+..++.+.|...
T Consensus 102 -dI~~~~i~v~~Ga~f~G~~~ 121 (146)
T COG1664 102 -DITTKEITVEEGAIFEGDCE 121 (146)
T ss_pred -eecccEEEEccCCEEEeEEE
Confidence 55555666666677665444
No 299
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=85.93 E-value=9 Score=32.62 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=55.2
Q ss_pred cccCCc-chHHHHHHHHHHCCCC---EEEEEeccChHHHHHHHHhhhh---ccCcEEEEeccCCcCC-CchHHHHHHhhc
Q 018327 26 VEFANK-PMILHQIEALKAVGVT---EVVLAINYQPEVMLNFLKEFEA---KLGIKIICSQETEPLG-TAGPLALARDKL 97 (358)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~gi~---~i~vv~~~~~~~i~~~l~~~~~---~~~~~i~~~~~~~~~g-~~~sl~~~~~~i 97 (358)
+|.-|. ..|..+|+.+.+.... -.++|+....+...+.++++.+ ..+.++.+.......| .+.++..+.+..
T Consensus 7 Ip~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a 86 (232)
T cd06437 7 LPVFNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVA 86 (232)
T ss_pred EecCCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhC
Confidence 455444 4889999999876432 1233444444443333333221 1234555444443345 456677777666
Q ss_pred cCCCCCcEEEEeCCeeeccC-HHHHHHHH
Q 018327 98 IDDTGEPFFVLNSDVISEYP-FAEMIEFH 125 (358)
Q Consensus 98 ~~~~~~~~lv~~gD~i~~~~-l~~~~~~~ 125 (358)
..+ .++++.+|.+...+ +..+...+
T Consensus 87 --~~~-~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 87 --KGE-YVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred --CCC-EEEEEcCCCCCChHHHHHhhhhh
Confidence 443 89999999988766 67755443
No 300
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=85.90 E-value=2 Score=31.55 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=55.2
Q ss_pred ccCCcEEecceEECCCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCCcEECCCcEEeccEEc-cCCEECCccEEcC
Q 018327 242 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIG-WHSTVGQWARVEN 320 (358)
Q Consensus 242 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~i~-~~~~ig~~~~i~~ 320 (358)
+.+++.+.++.....+..+... +.++........|++++.|...+-.+.+.|. +. +.+.+.. +...|...+.+..
T Consensus 5 I~~~~~i~G~i~~~~~v~i~G~--v~G~i~~~g~v~i~~~~~v~G~i~~~~~~i~-G~-v~G~v~a~~~v~i~~~~~v~G 80 (101)
T PF04519_consen 5 IGKGTKIEGDISSDGDVRIDGR--VEGNIKAEGKVKIGGNGEVKGDIKADDVIIS-GS-VDGNVEASGKVEIYGTARVEG 80 (101)
T ss_pred ECCCCEEEEEEEECcEEEEEEE--EEEEEEEceEEEEcCCCEEEEEEEEeEEEEc-CE-EeEEEEECceEEEeCCEEEEE
Confidence 4566677776666666555433 3334444446677777777644555566663 33 5554444 5566777777776
Q ss_pred ccEECCCcEECCceEEcCc
Q 018327 321 MTILGEDVHVCDEIYSNGG 339 (358)
Q Consensus 321 ~~~i~~~~~i~~~~~i~~~ 339 (358)
-+-.+...|..++.+.|.
T Consensus 81 -~i~~~~l~v~~ga~i~G~ 98 (101)
T PF04519_consen 81 -DITAGKLEVEGGASINGN 98 (101)
T ss_pred -EEEECEEEEeCCCEEEEE
Confidence 444555777777776653
No 301
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=85.58 E-value=8 Score=35.96 Aligned_cols=99 Identities=9% Similarity=0.152 Sum_probs=58.2
Q ss_pred ccccCC-cchHHHHHHHHHHCCC--CEEEEEeccChHHHHHHHHhhhhcc-CcEEEEeccCCcCCC---chHHHHHHhhc
Q 018327 25 LVEFAN-KPMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGT---AGPLALARDKL 97 (358)
Q Consensus 25 llpi~g-~pli~~~l~~l~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~-~~~i~~~~~~~~~g~---~~sl~~~~~~i 97 (358)
++|..| .+.|..+|+++.+..- -+|+++.+...+...+.++++.+.+ +.++.++...++.|. ..++.++.+..
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a 125 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHA 125 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhc
Confidence 566654 4589999999988763 3555554444344445555443322 234444433333343 34454444444
Q ss_pred cCCCCCcEEEEeCCeeeccC-HHHHHHHHH
Q 018327 98 IDDTGEPFFVLNSDVISEYP-FAEMIEFHK 126 (358)
Q Consensus 98 ~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~ 126 (358)
.. |.++++.+|.....+ ++.++..+.
T Consensus 126 --~g-e~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 126 --RH-DILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred --cC-CEEEEECCCCCcChhHHHHHHHHhc
Confidence 33 388999999987776 788877764
No 302
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=84.69 E-value=9.4 Score=34.78 Aligned_cols=102 Identities=12% Similarity=0.156 Sum_probs=59.8
Q ss_pred cccCCcc-hHHHHHHHH----HHCCCC-EEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccC
Q 018327 26 VEFANKP-MILHQIEAL----KAVGVT-EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLID 99 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l----~~~gi~-~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~ 99 (358)
+|.-|.. -|..+++.+ .....+ ++++|-+...+...+.++++.+..+.++.........|.+.++..+.+..
T Consensus 12 IP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A-- 89 (325)
T PRK10714 12 IPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHV-- 89 (325)
T ss_pred EcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhC--
Confidence 4554432 455555544 333333 55555444455566666654443344444333444568888888888776
Q ss_pred CCCCcEEEEeCCeeecc-CHHHHHHHHHhcCCe
Q 018327 100 DTGEPFFVLNSDVISEY-PFAEMIEFHKAHGGE 131 (358)
Q Consensus 100 ~~~~~~lv~~gD~i~~~-~l~~~~~~~~~~~~~ 131 (358)
..+ .++++.+|.-.+. .+.++++...+ +.+
T Consensus 90 ~gd-~vv~~DaD~q~~p~~i~~l~~~~~~-~~D 120 (325)
T PRK10714 90 TGD-LIITLDADLQNPPEEIPRLVAKADE-GYD 120 (325)
T ss_pred CCC-EEEEECCCCCCCHHHHHHHHHHHHh-hCC
Confidence 443 8889999996654 48888887653 344
No 303
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=83.55 E-value=1.9 Score=36.61 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=52.5
Q ss_pred ccccCCc-chHHHHHHHHHHCC--CCEEEEEeccChHHHHHHHHhhhhccC-cEEEEeccCCc---CCCchHHHHHHhhc
Q 018327 25 LVEFANK-PMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLG-IKIICSQETEP---LGTAGPLALARDKL 97 (358)
Q Consensus 25 llpi~g~-pli~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~-~~i~~~~~~~~---~g~~~sl~~~~~~i 97 (358)
++|..|. +.+..+|+.+.+.. --+++|+.+...++..+.++.+.+.++ ..+.++..... .+...++..+.+..
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~ 85 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAA 85 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH-
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhc
Confidence 4566555 58899999988653 345566565444444444444333222 22333333322 23566777777776
Q ss_pred cCCCCCcEEEEeCCeeeccC-HHHHHHHH
Q 018327 98 IDDTGEPFFVLNSDVISEYP-FAEMIEFH 125 (358)
Q Consensus 98 ~~~~~~~~lv~~gD~i~~~~-l~~~~~~~ 125 (358)
.. +.++++..|.+.+.+ +..+++.+
T Consensus 86 --~~-d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 86 --RG-DYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp -----SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred --CC-CEEEEECCCcEECHHHHHHHHHHH
Confidence 33 388999999988766 88888888
No 304
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=83.48 E-value=1.2 Score=41.81 Aligned_cols=61 Identities=28% Similarity=0.410 Sum_probs=44.2
Q ss_pred EEEEecCCccccCcCCCCCCCcccccC---CcchHHHHHHHHHHC----------CC-CEEEEEecc-ChHHHHHHHHh
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFA---NKPMILHQIEALKAV----------GV-TEVVLAINY-QPEVMLNFLKE 66 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~---g~pli~~~l~~l~~~----------gi-~~i~vv~~~-~~~~i~~~l~~ 66 (358)
++++|+|.|+|++- ..||.+.|++ |+.+++...+.+... +. =..+|.++. -.+...+|++.
T Consensus 100 ~~llaGgqgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~f~~ 175 (477)
T KOG2388|consen 100 VVLLAGGQGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEYFES 175 (477)
T ss_pred EEEeccCceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhHHhh
Confidence 68899999999987 7999999997 666888776654332 21 133566665 45778888874
No 305
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=83.17 E-value=13 Score=34.74 Aligned_cols=107 Identities=12% Similarity=0.133 Sum_probs=63.6
Q ss_pred ccccCC-cchHHHHHHHHHHCCC---CEEEEEeccChHHHHHHHHhhhhccC--cEEEEeccC-Cc---CCCchHHHHHH
Q 018327 25 LVEFAN-KPMILHQIEALKAVGV---TEVVLAINYQPEVMLNFLKEFEAKLG--IKIICSQET-EP---LGTAGPLALAR 94 (358)
Q Consensus 25 llpi~g-~pli~~~l~~l~~~gi---~~i~vv~~~~~~~i~~~l~~~~~~~~--~~i~~~~~~-~~---~g~~~sl~~~~ 94 (358)
.+|.-| .+.|..+|+.+.+... -+|+||-+...+...+.++++.+... ..+..+... .+ .|...++.++.
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~ 124 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGI 124 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHH
Confidence 455544 5589999999987653 25666665555555555555433221 123323221 12 35555677776
Q ss_pred hhccCCC--CCcEEEEeCCeeeccC-HHHHHHHHHhcCCe
Q 018327 95 DKLIDDT--GEPFFVLNSDVISEYP-FAEMIEFHKAHGGE 131 (358)
Q Consensus 95 ~~i~~~~--~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~ 131 (358)
+...... .|.++++.+|...+.+ +.++++...+.+.+
T Consensus 125 ~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~ 164 (384)
T TIGR03469 125 AAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLD 164 (384)
T ss_pred HHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCC
Confidence 6653111 2388999999987766 78888887765443
No 306
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=82.31 E-value=2.7 Score=43.76 Aligned_cols=56 Identities=5% Similarity=0.031 Sum_probs=38.1
Q ss_pred cEEeeeEECCCcEECCCcE-EeccEEccCCEECCccEEcCccE-ECCCcEECCceEEcC
Q 018327 282 VRLSRCTVMRGVRIKKHAC-ISSSIIGWHSTVGQWARVENMTI-LGEDVHVCDEIYSNG 338 (358)
Q Consensus 282 ~~i~~~~i~~~~~i~~~~~-i~~~~i~~~~~ig~~~~i~~~~~-i~~~~~i~~~~~i~~ 338 (358)
+.+.||++..++.++++.. |++|.|+.+..||++++|.+ +. ..-+..|.+++++-.
T Consensus 332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisg-v~~~~~~~~vP~~~ci~~ 389 (974)
T PRK13412 332 MFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITG-VPENSWNLDLPEGVCIDV 389 (974)
T ss_pred eEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEec-ccccccceecCCCcEEEE
Confidence 3455777788888877744 77778888888887777777 44 333466777766543
No 307
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=81.84 E-value=15 Score=32.42 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=55.8
Q ss_pred chHHHHHHHHHHCCCCEEEEEeccC-h-HHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEe
Q 018327 32 PMILHQIEALKAVGVTEVVLAINYQ-P-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN 109 (358)
Q Consensus 32 pli~~~l~~l~~~gi~~i~vv~~~~-~-~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~ 109 (358)
..|..+++.+... ..+|+||=+.. . +.+.+.+.+ . ..+.++...+..|-+.+.-.+.+.......+.++++.
T Consensus 8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~---~--~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD 81 (281)
T TIGR01556 8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR---G--QKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLD 81 (281)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc---C--CCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEEC
Confidence 4778888888775 44555544432 2 233333332 1 2344455555668888888877665322334899999
Q ss_pred CCeeeccC-HHHHHHHHHhc
Q 018327 110 SDVISEYP-FAEMIEFHKAH 128 (358)
Q Consensus 110 gD~i~~~~-l~~~~~~~~~~ 128 (358)
.|.....+ +..+++...+.
T Consensus 82 ~D~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 82 QDSRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99977665 77888776554
No 308
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=80.93 E-value=7.8 Score=30.68 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=42.6
Q ss_pred CCCEECCCcEECCCcEECCCCEECCCcEEeeeEECCC-cEECCCcEEeccEEccCCEECCccEEcCccEECCCcEECCce
Q 018327 256 ESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG-VRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEI 334 (358)
Q Consensus 256 ~~~~i~~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~-~~i~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~i~~~~ 334 (358)
+++.|+.++.+.++........|.. .+...+..+. +.|+...+|.+.+..+...|.. ...++ ....+.+.|..+.
T Consensus 22 ~~tli~~g~~f~G~l~f~~~l~IdG--~~~G~v~s~~~iiv~~~g~V~gei~a~~~iv~G-~v~Gn-i~~a~~Vei~~~g 97 (146)
T COG1664 22 PETLIGAGTTFKGELVFEGPLRIDG--TFEGDVHSDGGIVVGESGRVEGEIEAEHLIVEG-KVEGN-ILAAERVELYPGG 97 (146)
T ss_pred CCeEEecCCEEEEEEEecceEEEeE--EEEEEEEeCCCEEECCccEEEEEEEeCEEEEee-EEEEE-EEEeeEEEEcCCc
Confidence 4555666666654444445555655 5554444444 7777777777755555544422 22222 4444555555555
Q ss_pred EEcCc
Q 018327 335 YSNGG 339 (358)
Q Consensus 335 ~i~~~ 339 (358)
.+.|.
T Consensus 98 ~v~Gd 102 (146)
T COG1664 98 RVIGD 102 (146)
T ss_pred EEeee
Confidence 55443
No 309
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=80.88 E-value=16 Score=34.44 Aligned_cols=199 Identities=14% Similarity=0.187 Sum_probs=108.5
Q ss_pred ccccCC-cc-hHHHHHHHHHHCCCC--EEEEEeccChHHHHHHHHhhhhcc--CcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327 25 LVEFAN-KP-MILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKL--GIKIICSQETEPLGTAGPLALARDKLI 98 (358)
Q Consensus 25 llpi~g-~p-li~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~--~~~i~~~~~~~~~g~~~sl~~~~~~i~ 98 (358)
+.|.-| .+ .++.+++++.+.... +++++.+...++..+.+++..... .+.+.+. .....|.+.++..++...
T Consensus 59 iiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~gK~~al~~~l~~~- 136 (439)
T COG1215 59 IIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYP-EKKNGGKAGALNNGLKRA- 136 (439)
T ss_pred EEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEec-cccCccchHHHHHHHhhc-
Confidence 445534 45 899999999998743 777777766788888888765554 2333311 134457778888888776
Q ss_pred CCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCCeeEEEecCCCCeeeEE-EcCCCCcEEEEee-------cCC---CCCC
Q 018327 99 DDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMVDEPSKYGVVV-MEESTGKVEKFVE-------KPK---LFVG 166 (358)
Q Consensus 99 ~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~v~~~~e-------k~~---~~~~ 166 (358)
.. |-++++.+|.+...| +.+++..+...... .++..+....... ..- -+++..+.. .+. ....
T Consensus 137 -~~-d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~--~v~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~g~~ 211 (439)
T COG1215 137 -KG-DVVVILDADTVPEPDALRELVSPFEDPPVG--AVVGTPRIRNRPDPSNL-LGRIQAIEYLSAFYFRLRAASKGGLI 211 (439)
T ss_pred -CC-CEEEEEcCCCCCChhHHHHHHhhhcCCCee--EEeCCceeeecCChhhh-cchhcchhhhhhHHHhhhhhhhcCCe
Confidence 34 388899999988877 78888887654433 1221111100000 000 011111111 111 0112
Q ss_pred CeEEEEEEEEChhhhhhcc-CCCCCcccch-HHHHH-hcCceEEEe-ecCeEEe-cCCHHHHHHHHHHH
Q 018327 167 NKINAGIYLLNPAVLDRIE-LRPTSIEKEV-FPKIA-LEGKLFAMV-LPGFWMD-IGQPRDYITGLRLY 230 (358)
Q Consensus 167 ~~~~~Giy~~~~~~l~~l~-~~~~~~~~d~-l~~l~-~~~~v~~~~-~~~~~~d-i~t~~dy~~a~~~~ 230 (358)
...+...+.+++++++... .......+|. +...+ ..|--..+. -.-.|.+ ..|..++.+....+
T Consensus 212 ~~~~G~~~~~rr~aL~~~g~~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW 280 (439)
T COG1215 212 SFLSGSSSAFRRSALEEVGGWLEDTITEDADLTLRLHLRGYRVVYVPEAIVWTEAPETLKELWRQRLRW 280 (439)
T ss_pred EEEcceeeeEEHHHHHHhCCCCCCceeccHHHHHHHHHCCCeEEEeecceEeeeCcccHHHHHHHHHHH
Confidence 3456778899999999875 3344444443 33322 333322222 2213333 35666665554433
No 310
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=80.23 E-value=17 Score=30.84 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=52.5
Q ss_pred CCc-chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEE
Q 018327 29 ANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (358)
Q Consensus 29 ~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv 107 (358)
.+. ..|..+|+.+.+. ..+++||=+...+...... +. .. ..+.++......|-+.+...+.+.....+.+.+++
T Consensus 7 n~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~-~~-~~--~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~ 81 (237)
T cd02526 7 NPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRL-RL-NS--EKIELIHLGENLGIAKALNIGIKAALENGADYVLL 81 (237)
T ss_pred cCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHh-hc-cC--CcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEE
Confidence 455 6889999998877 5555555433323222222 21 12 23333444445677777777776653212348999
Q ss_pred EeCCeeeccC-HHHHH
Q 018327 108 LNSDVISEYP-FAEMI 122 (358)
Q Consensus 108 ~~gD~i~~~~-l~~~~ 122 (358)
+..|...+.+ +..++
T Consensus 82 lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 82 FDQDSVPPPDMVEKLL 97 (237)
T ss_pred ECCCCCcCHhHHHHHH
Confidence 9999987665 67774
No 311
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=79.04 E-value=26 Score=32.05 Aligned_cols=95 Identities=11% Similarity=0.118 Sum_probs=57.7
Q ss_pred CcchHHHHHHHHHHC----------CCCEEEEEeccChHHHHHHHHhhhhcc---CcEEEEeccCCcCCCchHHHHHHhh
Q 018327 30 NKPMILHQIEALKAV----------GVTEVVLAINYQPEVMLNFLKEFEAKL---GIKIICSQETEPLGTAGPLALARDK 96 (358)
Q Consensus 30 g~pli~~~l~~l~~~----------gi~~i~vv~~~~~~~i~~~l~~~~~~~---~~~i~~~~~~~~~g~~~sl~~~~~~ 96 (358)
..+-|..+|+.+.+. +.-++++|-+...+...+.++++.+.. +..+..+...+..|.+.++..+...
T Consensus 81 e~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~Gi~~ 160 (333)
T PTZ00260 81 EEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGMLA 160 (333)
T ss_pred CHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 445677777766442 134566665544555555555544331 2234444455556888888888876
Q ss_pred ccCCCCCcEEEEeCCeeeccC-HHHHHHHHHh
Q 018327 97 LIDDTGEPFFVLNSDVISEYP-FAEMIEFHKA 127 (358)
Q Consensus 97 i~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~ 127 (358)
. .. +.++.+.+|...+.+ +..+++...+
T Consensus 161 a--~g-d~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 161 S--RG-KYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred c--cC-CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5 34 388899999866544 7777776543
No 312
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=78.89 E-value=31 Score=28.92 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=57.3
Q ss_pred cccCC-cchHHHHHHHHHHCCC---CEEEEEeccChHHHHHHHHhhhhc---cCcEEEEec--cCCcCCCchHHHHHHhh
Q 018327 26 VEFAN-KPMILHQIEALKAVGV---TEVVLAINYQPEVMLNFLKEFEAK---LGIKIICSQ--ETEPLGTAGPLALARDK 96 (358)
Q Consensus 26 lpi~g-~pli~~~l~~l~~~gi---~~i~vv~~~~~~~i~~~l~~~~~~---~~~~i~~~~--~~~~~g~~~sl~~~~~~ 96 (358)
+|.-| ...|..+|+.+..... -+++||-+...+...+.++++..+ .++.+.... .....|.+.+.-.+.+.
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~ 82 (219)
T cd06913 3 LPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQ 82 (219)
T ss_pred EeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHh
Confidence 34443 3489999999987643 255555444444444445544322 123332222 12234666666666655
Q ss_pred ccCCCCCcEEEEeCCeeeccC-HHHHHHHHHhcC
Q 018327 97 LIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (358)
Q Consensus 97 i~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~ 129 (358)
. .. +.++++.+|.+...+ +..++....+..
T Consensus 83 a--~g-d~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 83 S--SG-RYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred c--CC-CEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 5 34 388899999876655 777777665543
No 313
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=78.04 E-value=33 Score=28.40 Aligned_cols=104 Identities=15% Similarity=0.214 Sum_probs=61.2
Q ss_pred CcchHHHHHH-HHHHCCCCEEEEEecc-ChHHHHHHHHhhhhccC-cEEEEeccCCcCCCchHHHHHHhhccCCCCCcEE
Q 018327 30 NKPMILHQIE-ALKAVGVTEVVLAINY-QPEVMLNFLKEFEAKLG-IKIICSQETEPLGTAGPLALARDKLIDDTGEPFF 106 (358)
Q Consensus 30 g~pli~~~l~-~l~~~gi~~i~vv~~~-~~~~i~~~l~~~~~~~~-~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~l 106 (358)
|-|++-|.+. .+...+.+.=+|++.. ..+-.++..+.+.+.++ -++...+.....|.+.+..++.... ..+ .++
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a--~g~-fiv 93 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHA--TGD-FIV 93 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhc--cCC-eEE
Confidence 5666767665 5556676655555554 33333333333222222 3444455666789999999998877 332 556
Q ss_pred EEeCCeeecc-CHHHHHHHHHhcCCeeEEEe
Q 018327 107 VLNSDVISEY-PFAEMIEFHKAHGGEASIMV 136 (358)
Q Consensus 107 v~~gD~i~~~-~l~~~~~~~~~~~~~~~~~~ 136 (358)
+..+|+--+. -+.++++..++.+-+.++.+
T Consensus 94 iMDaDlsHhPk~ipe~i~lq~~~~~div~GT 124 (238)
T KOG2978|consen 94 IMDADLSHHPKFIPEFIRLQKEGNYDIVLGT 124 (238)
T ss_pred EEeCccCCCchhHHHHHHHhhccCcceeeee
Confidence 6677773332 27888887666655655554
No 314
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=77.99 E-value=28 Score=29.61 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=57.5
Q ss_pred cccCC-cchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCc
Q 018327 26 VEFAN-KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEP 104 (358)
Q Consensus 26 lpi~g-~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~ 104 (358)
+|.-| ...|..+|+++... .++++|+-+...+...+.+++ +++.+... ...|.+.+...+.+.. ..+ .
T Consensus 6 i~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~----~~~~v~~~---~~~g~~~~~n~~~~~a--~~d-~ 74 (229)
T cd02511 6 IITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKE----YGAKVYQR---WWDGFGAQRNFALELA--TND-W 74 (229)
T ss_pred EEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHH----cCCEEEEC---CCCChHHHHHHHHHhC--CCC-E
Confidence 34433 34788889888654 367777766655555555553 35555433 4446666666677666 343 8
Q ss_pred EEEEeCCeeeccC-HHHHHHHHHhc
Q 018327 105 FFVLNSDVISEYP-FAEMIEFHKAH 128 (358)
Q Consensus 105 ~lv~~gD~i~~~~-l~~~~~~~~~~ 128 (358)
++++.+|.+...+ +..+.+...+.
T Consensus 75 vl~lDaD~~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 75 VLSLDADERLTPELADEILALLATD 99 (229)
T ss_pred EEEEeCCcCcCHHHHHHHHHHHhCC
Confidence 8999999987666 55566554443
No 315
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=76.63 E-value=34 Score=35.55 Aligned_cols=98 Identities=13% Similarity=0.119 Sum_probs=62.0
Q ss_pred cccccCCcc--hHHHHHHHHHHCC-C-C--EEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC-cCCCchHHHHHHhh
Q 018327 24 PLVEFANKP--MILHQIEALKAVG-V-T--EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE-PLGTAGPLALARDK 96 (358)
Q Consensus 24 ~llpi~g~p--li~~~l~~l~~~g-i-~--~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~-~~g~~~sl~~~~~~ 96 (358)
-++|.-|.+ ++..++..+.+.. . + +|+|+-+...++..+..++. ++.. ....+ ..+.++++-.+.+.
T Consensus 264 ViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~----~v~y--I~R~~n~~gKAGnLN~aL~~ 337 (852)
T PRK11498 264 IFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEV----GVKY--IARPTHEHAKAGNINNALKY 337 (852)
T ss_pred EEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHC----CcEE--EEeCCCCcchHHHHHHHHHh
Confidence 356666877 6778888876654 2 2 45665554567776666542 4443 33222 23456777777776
Q ss_pred ccCCCCCcEEEEeCCeeeccC-HHHHHHHHHhcCC
Q 018327 97 LIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGG 130 (358)
Q Consensus 97 i~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~~ 130 (358)
. +.+ .++++.+|.+...+ ++.++..+.++..
T Consensus 338 a--~GE-yIavlDAD~ip~pdfL~~~V~~f~~dP~ 369 (852)
T PRK11498 338 A--KGE-FVAIFDCDHVPTRSFLQMTMGWFLKDKK 369 (852)
T ss_pred C--CCC-EEEEECCCCCCChHHHHHHHHHHHhCCC
Confidence 6 443 89999999987766 6777776655433
No 316
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=76.10 E-value=32 Score=35.15 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=59.9
Q ss_pred ccccCCcc--hHHHHHHHHHHCC-C-C--EEEEEeccChHH--------------HHHHHHhhhhccCcEEEEeccCC-c
Q 018327 25 LVEFANKP--MILHQIEALKAVG-V-T--EVVLAINYQPEV--------------MLNFLKEFEAKLGIKIICSQETE-P 83 (358)
Q Consensus 25 llpi~g~p--li~~~l~~l~~~g-i-~--~i~vv~~~~~~~--------------i~~~l~~~~~~~~~~i~~~~~~~-~ 83 (358)
++|..|.+ +++.+++.+.+.. . + +|+|+-+...+. -++.++++.+..++.. ....+ .
T Consensus 136 iIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~y--i~r~~n~ 213 (713)
T TIGR03030 136 FIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNY--ITRPRNV 213 (713)
T ss_pred EEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEE--EECCCCC
Confidence 56777876 6678899887765 2 2 445543321111 1234444444445544 33222 2
Q ss_pred CCCchHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHHhcC
Q 018327 84 LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (358)
Q Consensus 84 ~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~ 129 (358)
-+.++++..+.+.. +.+ .++++.+|.+...+ +++++..+.+..
T Consensus 214 ~~KAgnLN~al~~a--~gd-~Il~lDAD~v~~pd~L~~~v~~f~~dp 257 (713)
T TIGR03030 214 HAKAGNINNALKHT--DGE-LILIFDADHVPTRDFLQRTVGWFVEDP 257 (713)
T ss_pred CCChHHHHHHHHhc--CCC-EEEEECCCCCcChhHHHHHHHHHHhCC
Confidence 24467787777766 443 89999999988777 788887765543
No 317
>PRK10018 putative glycosyl transferase; Provisional
Probab=75.04 E-value=30 Score=30.77 Aligned_cols=96 Identities=8% Similarity=0.073 Sum_probs=58.4
Q ss_pred cccCCcc-hHHHHHHHHHHCCCC--EEEEEeccCh--HHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCC
Q 018327 26 VEFANKP-MILHQIEALKAVGVT--EVVLAINYQP--EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDD 100 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l~~~gi~--~i~vv~~~~~--~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~ 100 (358)
+|.-|.+ .|..+|+++.+.... +++||-+... +.+.++..++ ....+.+.......|.+.+.-.+.+.. .
T Consensus 11 ip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~---~~~ri~~i~~~~n~G~~~a~N~gi~~a--~ 85 (279)
T PRK10018 11 MPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTAL---NDPRITYIHNDINSGACAVRNQAIMLA--Q 85 (279)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHc---CCCCEEEEECCCCCCHHHHHHHHHHHc--C
Confidence 4554544 788999998877544 4444333222 3344444432 123455555555667777777777766 4
Q ss_pred CCCcEEEEeCCeeeccC-HHHHHHHHHh
Q 018327 101 TGEPFFVLNSDVISEYP-FAEMIEFHKA 127 (358)
Q Consensus 101 ~~~~~lv~~gD~i~~~~-l~~~~~~~~~ 127 (358)
.+ .++++.+|.....+ +..+++...+
T Consensus 86 g~-~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 86 GE-YITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred CC-EEEEECCCCCCCccHHHHHHHHHHh
Confidence 43 88899999876655 7888876554
No 318
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=72.77 E-value=32 Score=24.59 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=48.0
Q ss_pred cchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC-cCCCchHHHHHH-hhccCCCCCcEEEE
Q 018327 31 KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE-PLGTAGPLALAR-DKLIDDTGEPFFVL 108 (358)
Q Consensus 31 ~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~-~~g~~~sl~~~~-~~i~~~~~~~~lv~ 108 (358)
-++|...|......|+++++|+.+...+...+.++++. ++.+....... ........+... +.. ...+-++.+
T Consensus 4 ~~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~~---~v~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~dWvl~~ 78 (97)
T PF13704_consen 4 ADYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRALP---GVGIIRWVDPYRDERRQRAWRNALIERA--FDADWVLFL 78 (97)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhCC---CcEEEEeCCCccchHHHHHHHHHHHHhC--CCCCEEEEE
Confidence 35888999999999999999998877777777777652 24443332211 111111222222 222 233478888
Q ss_pred eCCeeec
Q 018327 109 NSDVISE 115 (358)
Q Consensus 109 ~gD~i~~ 115 (358)
.+|-+..
T Consensus 79 D~DEfl~ 85 (97)
T PF13704_consen 79 DADEFLV 85 (97)
T ss_pred eeeEEEe
Confidence 8888543
No 319
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=69.04 E-value=38 Score=28.17 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=54.4
Q ss_pred cccCCcc-hHHHHHHHHHHCC--CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327 26 VEFANKP-MILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (358)
Q Consensus 26 lpi~g~p-li~~~l~~l~~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~ 102 (358)
+|.-|.+ .|..+|+++.+.- ..+++|+-+...+...+.+++ ..+.+... ..|.+.+.-.+.... ..
T Consensus 5 i~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~------~~~~~~~~--~~g~~~a~n~g~~~a--~~- 73 (221)
T cd02522 5 IPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS------AGVVVISS--PKGRARQMNAGAAAA--RG- 73 (221)
T ss_pred EEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc------CCeEEEeC--CcCHHHHHHHHHHhc--cC-
Confidence 4565554 7888898887764 345555544444555555554 12223322 235566666666666 33
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327 103 EPFFVLNSDVISEYP-FAEMIEFHKAH 128 (358)
Q Consensus 103 ~~~lv~~gD~i~~~~-l~~~~~~~~~~ 128 (358)
+.++++..|.....+ ++.++......
T Consensus 74 ~~i~~~D~D~~~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 74 DWLLFLHADTRLPPDWDAAIIETLRAD 100 (221)
T ss_pred CEEEEEcCCCCCChhHHHHHHHHhhcC
Confidence 388899999977655 66665554433
No 320
>PRK10063 putative glycosyl transferase; Provisional
Probab=67.69 E-value=82 Score=27.29 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=53.8
Q ss_pred CcchHHHHHHHHHHC----CCC-EEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCc
Q 018327 30 NKPMILHQIEALKAV----GVT-EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEP 104 (358)
Q Consensus 30 g~pli~~~l~~l~~~----gi~-~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~ 104 (358)
....|..+|+.+... ..+ +++|+=+...+...+.++++.....+. ++.+. ..|.+.++-.+.+.. ..+ .
T Consensus 12 ~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~~i~--~i~~~-~~G~~~A~N~Gi~~a--~g~-~ 85 (248)
T PRK10063 12 NLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIFNLR--FVSEP-DNGIYDAMNKGIAMA--QGR-F 85 (248)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccCCEE--EEECC-CCCHHHHHHHHHHHc--CCC-E
Confidence 344788888888642 222 444443334466666676654322333 33333 348888888888776 443 8
Q ss_pred EEEEeCCeeeccCHHHHHHHHHhc
Q 018327 105 FFVLNSDVISEYPFAEMIEFHKAH 128 (358)
Q Consensus 105 ~lv~~gD~i~~~~l~~~~~~~~~~ 128 (358)
++.+.+|.+...+..+++.+....
T Consensus 86 v~~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 86 ALFLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred EEEEeCCcccCcCHHHHHHHHHhC
Confidence 888887776655544445554433
No 321
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=66.91 E-value=91 Score=27.55 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=45.4
Q ss_pred HHHHHHC--CCCEEEEEecc-ChHHHHHHHHhhhhccCcE-EEEec-cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe
Q 018327 38 IEALKAV--GVTEVVLAINY-QPEVMLNFLKEFEAKLGIK-IICSQ-ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV 112 (358)
Q Consensus 38 l~~l~~~--gi~~i~vv~~~-~~~~i~~~l~~~~~~~~~~-i~~~~-~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~ 112 (358)
|..+... ..+--+||+.. ..+...+.+.++.+..+.. ..... .....+.+.+.-.+.... ..+ -++++.+|.
T Consensus 23 l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A--~~d-~l~flD~D~ 99 (281)
T PF10111_consen 23 LESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYA--RGD-YLIFLDADC 99 (281)
T ss_pred HHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHc--CCC-EEEEEcCCe
Confidence 5556552 23333444444 3344445555554444433 22222 222346666655556555 333 888999999
Q ss_pred eeccC-HHHHHH
Q 018327 113 ISEYP-FAEMIE 123 (358)
Q Consensus 113 i~~~~-l~~~~~ 123 (358)
+...+ +..+++
T Consensus 100 i~~~~~i~~~~~ 111 (281)
T PF10111_consen 100 IPSPDFIEKLLN 111 (281)
T ss_pred eeCHHHHHHHHH
Confidence 88766 777777
No 322
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=65.83 E-value=55 Score=29.33 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=64.8
Q ss_pred cccCCcchHHHHHHHHHHCCCCEEEE-Eec-cChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCC
Q 018327 26 VEFANKPMILHQIEALKAVGVTEVVL-AIN-YQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGE 103 (358)
Q Consensus 26 lpi~g~pli~~~l~~l~~~gi~~i~v-v~~-~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~ 103 (358)
...+....+..+++.+.+.......+ ++. ...+...+.++... ...+.++...+-.|-+.+.-++.........+
T Consensus 10 v~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~---~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~ 86 (305)
T COG1216 10 VTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF---FPNVRLIENGENLGFAGGFNRGIKYALAKGDD 86 (305)
T ss_pred EecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc---CCcEEEEEcCCCccchhhhhHHHHHHhcCCCc
Confidence 33456668888899888887443333 344 34555555555411 12344455555556666555555544322221
Q ss_pred cEEEEeCCeeeccC-HHHHHHHHHhcCCeeEEE
Q 018327 104 PFFVLNSDVISEYP-FAEMIEFHKAHGGEASIM 135 (358)
Q Consensus 104 ~~lv~~gD~i~~~~-l~~~~~~~~~~~~~~~~~ 135 (358)
.+++++-|++.+.+ ++++++.+.+.+..+.+.
T Consensus 87 ~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~ 119 (305)
T COG1216 87 YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVG 119 (305)
T ss_pred EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEee
Confidence 59999999888776 899999988776544443
No 323
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=63.91 E-value=57 Score=26.71 Aligned_cols=99 Identities=10% Similarity=0.119 Sum_probs=56.1
Q ss_pred cccC-CcchHHHHHHHHHHCCC-CEEEEEeccChHHHHHHHHhhh-hccCcEEEEec-cCCcCCCchHHHHHHhhccCC-
Q 018327 26 VEFA-NKPMILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFE-AKLGIKIICSQ-ETEPLGTAGPLALARDKLIDD- 100 (358)
Q Consensus 26 lpi~-g~pli~~~l~~l~~~gi-~~i~vv~~~~~~~i~~~l~~~~-~~~~~~i~~~~-~~~~~g~~~sl~~~~~~i~~~- 100 (358)
+|.- ....|..+|+++.+... .+|+|+-+...+...+.++ +. ...++.+.... .....|-+.++..+.+.+...
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~-~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~ 81 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR-LAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQIL 81 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh-heecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhc
Confidence 3443 34488899999987652 2455555545555555555 11 11223332211 123347777888777765311
Q ss_pred -------CCCcEEEEeCCeeeccC-HHHHHHHH
Q 018327 101 -------TGEPFFVLNSDVISEYP-FAEMIEFH 125 (358)
Q Consensus 101 -------~~~~~lv~~gD~i~~~~-l~~~~~~~ 125 (358)
..+.++++.+|.....+ +..+...+
T Consensus 82 ~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 82 IEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred cccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 11368899999987766 66655544
No 324
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=63.32 E-value=80 Score=26.94 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=58.8
Q ss_pred EEEEecCCccccCcCCCCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC
Q 018327 3 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE 82 (358)
Q Consensus 3 avIla~G~g~rl~~~t~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~ 82 (358)
.++||.|.=..|.. +.| -+ --..+|...+..+... .++-|++.. .+++.+..++|.. .+.++.+.....
T Consensus 91 illlCTG~F~~l~~---~~~-ll---eP~ril~~lV~al~~~--~~vGVivP~-~eQ~~~~~~kW~~-l~~~~~~a~asP 159 (221)
T PF07302_consen 91 ILLLCTGEFPGLTA---RNP-LL---EPDRILPPLVAALVGG--HQVGVIVPL-PEQIAQQAEKWQP-LGNPVVVAAASP 159 (221)
T ss_pred EEEeccCCCCCCCC---Ccc-ee---ehHHhHHHHHHHhcCC--CeEEEEecC-HHHHHHHHHHHHh-cCCCeEEEEeCC
Confidence 35566665444433 233 22 2345677777766543 777777765 3556666677643 344454444444
Q ss_pred cCCCchHHHHHHhhccCCCCCcEEEEeCCeee
Q 018327 83 PLGTAGPLALARDKLIDDTGEPFFVLNSDVIS 114 (358)
Q Consensus 83 ~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~ 114 (358)
..++.+.+..+...+...+. +++++.|=-++
T Consensus 160 y~~~~~~l~~Aa~~L~~~ga-dlIvLDCmGYt 190 (221)
T PF07302_consen 160 YEGDEEELAAAARELAEQGA-DLIVLDCMGYT 190 (221)
T ss_pred CCCCHHHHHHHHHHHHhcCC-CEEEEECCCCC
Confidence 44788888888888864455 88887664444
No 325
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=61.42 E-value=88 Score=28.18 Aligned_cols=99 Identities=8% Similarity=0.028 Sum_probs=57.0
Q ss_pred cccCCc-chHHHHHHHHHHC----CCCEEEEEeccChHHHHHHHHhhhhccCcEEEEec-cCCcCCCchHHHHHHhhccC
Q 018327 26 VEFANK-PMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ-ETEPLGTAGPLALARDKLID 99 (358)
Q Consensus 26 lpi~g~-pli~~~l~~l~~~----gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~-~~~~~g~~~sl~~~~~~i~~ 99 (358)
+|.-|. ..|..+|+.+.+. ...+|+||-+...+...+.++++....--...... .....|.+.++..+....
T Consensus 37 IPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~~g~~~a-- 114 (306)
T PRK13915 37 LPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGKGEALWRSLAAT-- 114 (306)
T ss_pred EecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhhhccccCCCHHHHHHHHHHhc--
Confidence 344344 4788888888753 24566666555556666666553211000000001 123457778888777665
Q ss_pred CCCCcEEEEeCCee-eccC-HHHHHHHHHh
Q 018327 100 DTGEPFFVLNSDVI-SEYP-FAEMIEFHKA 127 (358)
Q Consensus 100 ~~~~~~lv~~gD~i-~~~~-l~~~~~~~~~ 127 (358)
.. +.++++.+|.. .+.+ +..+++.+..
T Consensus 115 ~g-d~vv~lDaD~~~~~p~~l~~l~~~l~~ 143 (306)
T PRK13915 115 TG-DIVVFVDADLINFDPMFVPGLLGPLLT 143 (306)
T ss_pred CC-CEEEEEeCccccCCHHHHHHHHHHHHh
Confidence 33 38899999995 5444 7888887653
No 326
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=61.10 E-value=99 Score=26.77 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCC-------cCCCchHHHHHHhhccCCCCCcE
Q 018327 33 MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETE-------PLGTAGPLALARDKLIDDTGEPF 105 (358)
Q Consensus 33 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~-------~~g~~~sl~~~~~~i~~~~~~~~ 105 (358)
-..-.++.|...|+++|.+++.|. +++.+.+.++....|+++.-..... ..=+.+++..+...+...+. +.
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~-~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~a-DA 184 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYT-PETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDA-DA 184 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCc-HHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCC-CE
Confidence 455668899999999999999986 5566666665555677664332111 01223455555544422333 66
Q ss_pred EEEeCCeeeccC
Q 018327 106 FVLNSDVISEYP 117 (358)
Q Consensus 106 lv~~gD~i~~~~ 117 (358)
+++.|-.+-..+
T Consensus 185 ifisCTnLrt~~ 196 (239)
T TIGR02990 185 LFLSCTALRAAT 196 (239)
T ss_pred EEEeCCCchhHH
Confidence 666676655434
No 327
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=59.73 E-value=1.2e+02 Score=26.46 Aligned_cols=103 Identities=14% Similarity=0.149 Sum_probs=55.7
Q ss_pred ccccCCcc--hHHHHHHHHHH----CC---CCEEEEEeccC-hHHHHH----HHHhhhhcc--CcEEEEeccCCcCCC-c
Q 018327 25 LVEFANKP--MILHQIEALKA----VG---VTEVVLAINYQ-PEVMLN----FLKEFEAKL--GIKIICSQETEPLGT-A 87 (358)
Q Consensus 25 llpi~g~p--li~~~l~~l~~----~g---i~~i~vv~~~~-~~~i~~----~l~~~~~~~--~~~i~~~~~~~~~g~-~ 87 (358)
|+|+.|-+ ++.-+|+.+.+ .. --+| ++++.. .+++.. .+.++.+.+ +..+.+....+..|. +
T Consensus 4 liP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~Ka 82 (254)
T cd04191 4 VMPVYNEDPARVFAGLRAMYESLAKTGLADHFDF-FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRKA 82 (254)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEE-EEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCccH
Confidence 57887777 46777776653 22 2355 444443 223221 122222211 355555554444444 3
Q ss_pred hHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHHhcC
Q 018327 88 GPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG 129 (358)
Q Consensus 88 ~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~~ 129 (358)
..+..++....... +.++++.+|.....+ |..++..+....
T Consensus 83 g~l~~~~~~~~~~~-~~i~~~DaD~~~~p~~l~~~v~~~~~~~ 124 (254)
T cd04191 83 GNIADFCRRWGSRY-DYMVVLDADSLMSGDTIVRLVRRMEANP 124 (254)
T ss_pred HHHHHHHHHhCCCC-CEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 45555554321123 389999999987766 788888776443
No 328
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=58.72 E-value=84 Score=26.21 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.5
Q ss_pred CeEEEEecCCccccCc
Q 018327 1 MKALILVGGFGTRLRP 16 (358)
Q Consensus 1 m~avIla~G~g~rl~~ 16 (358)
|+.+||+.|.||.|..
T Consensus 1 ~ki~VlaSG~GSNlqa 16 (200)
T COG0299 1 KKIAVLASGNGSNLQA 16 (200)
T ss_pred CeEEEEEeCCcccHHH
Confidence 6789999999999844
No 329
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=56.66 E-value=41 Score=28.24 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=12.4
Q ss_pred CeEEEEecCCccccCc
Q 018327 1 MKALILVGGFGTRLRP 16 (358)
Q Consensus 1 m~avIla~G~g~rl~~ 16 (358)
|+.+|+|.|.|+-+.+
T Consensus 2 ~ki~vl~sg~gs~~~~ 17 (200)
T PRK05647 2 KRIVVLASGNGSNLQA 17 (200)
T ss_pred ceEEEEEcCCChhHHH
Confidence 6788888888877744
No 330
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=55.22 E-value=1.9e+02 Score=29.60 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=58.4
Q ss_pred cccccCCcch------HHHHHHHHHHCCC---CEEEEEeccChHHHHH----HHHhhhhcc--CcEEEEeccCC-cCCCc
Q 018327 24 PLVEFANKPM------ILHQIEALKAVGV---TEVVLAINYQPEVMLN----FLKEFEAKL--GIKIICSQETE-PLGTA 87 (358)
Q Consensus 24 ~llpi~g~pl------i~~~l~~l~~~gi---~~i~vv~~~~~~~i~~----~l~~~~~~~--~~~i~~~~~~~-~~g~~ 87 (358)
-++|+.|.+. |+-+++.+.+.+- -+++++.+...+++.. .+.++.+++ +..+.+..... .-..+
T Consensus 128 VliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~Ka 207 (691)
T PRK05454 128 ILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKA 207 (691)
T ss_pred EEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccH
Confidence 4678888773 6666777766542 2566665554444321 233333333 23455543222 11234
Q ss_pred hHHHHHHhhccCCCCCcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327 88 GPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAH 128 (358)
Q Consensus 88 ~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~-l~~~~~~~~~~ 128 (358)
..+....+...... |.++++.+|.+...| +.+++..+..+
T Consensus 208 GNl~~~~~~~~~~~-eyivvLDADs~m~~d~L~~lv~~m~~d 248 (691)
T PRK05454 208 GNIADFCRRWGGAY-DYMVVLDADSLMSGDTLVRLVRLMEAN 248 (691)
T ss_pred HHHHHHHHhcCCCc-CEEEEEcCCCCCCHHHHHHHHHHHhhC
Confidence 45655555543233 499999999987766 78888776543
No 331
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=52.25 E-value=88 Score=25.99 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=12.1
Q ss_pred CeEEEEecCCccccCc
Q 018327 1 MKALILVGGFGTRLRP 16 (358)
Q Consensus 1 m~avIla~G~g~rl~~ 16 (358)
|+..||+.|.|+-+.+
T Consensus 1 ~riail~sg~gs~~~~ 16 (190)
T TIGR00639 1 KRIVVLISGNGSNLQA 16 (190)
T ss_pred CeEEEEEcCCChhHHH
Confidence 6778888888877744
No 332
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=50.99 E-value=1.4e+02 Score=28.82 Aligned_cols=96 Identities=25% Similarity=0.408 Sum_probs=55.0
Q ss_pred CCCCcccccC------CcchHHHHHHHHH---HCCCCEEEEEeccC-hHHHHHHHHh----hhhccCcE--EEEeccCCc
Q 018327 20 SVPKPLVEFA------NKPMILHQIEALK---AVGVTEVVLAINYQ-PEVMLNFLKE----FEAKLGIK--IICSQETEP 83 (358)
Q Consensus 20 ~~pK~llpi~------g~pli~~~l~~l~---~~gi~~i~vv~~~~-~~~i~~~l~~----~~~~~~~~--i~~~~~~~~ 83 (358)
.+||.|||+. -.|+=+|..+... ..|.-++...+++. .+..++.+.+ +.+.+++. |.|..|...
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~~g~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v~f~IsfS~Qk~s 244 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAALYAKSNGKANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGVKFEISFSEQKPS 244 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHHHHhcCCeEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCceEEEEecccCCC
Confidence 4899999997 3579999988543 22466777777763 3444455443 33344443 334333211
Q ss_pred -----------------------CCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCH
Q 018327 84 -----------------------LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPF 118 (358)
Q Consensus 84 -----------------------~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l 118 (358)
-|-.+||...+..+ +. |-++|=+.|.+....+
T Consensus 245 TDTIAv~~dN~pFR~~dG~LlFRPgGHGALieNLN~l--da-DiIFIKNIDNVvpd~~ 299 (513)
T PF14134_consen 245 TDTIAVDPDNTPFRNEDGSLLFRPGGHGALIENLNDL--DA-DIIFIKNIDNVVPDRL 299 (513)
T ss_pred CCeeEECCCCCccCCCCCCEEeCCCcchHHHhhhccc--cC-CEEEEeCccccCCccc
Confidence 13335666666555 32 2556667888775544
No 333
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=49.60 E-value=97 Score=26.59 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=20.6
Q ss_pred CcEEEEeCCeeeccC-HHHHHHHHHhc
Q 018327 103 EPFFVLNSDVISEYP-FAEMIEFHKAH 128 (358)
Q Consensus 103 ~~~lv~~gD~i~~~~-l~~~~~~~~~~ 128 (358)
+.++++.+|.+...+ +..+++.+.+.
T Consensus 75 e~i~~~DaD~~~~~~~l~~l~~~~~~~ 101 (244)
T cd04190 75 EFILLVDADTKFDPDSIVQLYKAMDKD 101 (244)
T ss_pred CEEEEECCCCcCCHhHHHHHHHHHHhC
Confidence 488999999988877 78888776543
No 334
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=48.74 E-value=35 Score=23.09 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=31.4
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHh
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE 66 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~ 66 (358)
|+.|+++.++.+.+.|++.+.+.+........+++++
T Consensus 43 g~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k 79 (83)
T PF00583_consen 43 GSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK 79 (83)
T ss_dssp HHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH
T ss_pred chhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH
Confidence 6779999999999999999999999877766666654
No 335
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=47.39 E-value=90 Score=29.04 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=54.2
Q ss_pred ccCCcc---hHHHHHHHHHHCC-CCEEEEEeccCh--HHHHHHHHhhhhc-cCcEEEEe--ccCCcCCCchHHHHHHhhc
Q 018327 27 EFANKP---MILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEAK-LGIKIICS--QETEPLGTAGPLALARDKL 97 (358)
Q Consensus 27 pi~g~p---li~~~l~~l~~~g-i~~i~vv~~~~~--~~i~~~l~~~~~~-~~~~i~~~--~~~~~~g~~~sl~~~~~~i 97 (358)
=+|=|| -+.-.+..+.+.+ ++.++++++.+. +...++++.+.-. .+.....- .++-..-++..+....+.+
T Consensus 9 I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl 88 (383)
T COG0381 9 IFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVL 88 (383)
T ss_pred EEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHH
Confidence 334455 3344577888887 999999999876 6666677654211 11111111 1111112233333334444
Q ss_pred cCCCCCcEEEEeCCeeeccCHHHHHHHHHhcCC
Q 018327 98 IDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGG 130 (358)
Q Consensus 98 ~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~~~ 130 (358)
.+... +++++.||+-+. |...+..+..+-+
T Consensus 89 ~~~kP-D~VlVhGDT~t~--lA~alaa~~~~Ip 118 (383)
T COG0381 89 EEEKP-DLVLVHGDTNTT--LAGALAAFYLKIP 118 (383)
T ss_pred HhhCC-CEEEEeCCcchH--HHHHHHHHHhCCc
Confidence 43334 899999999653 5544444444433
No 336
>PRK10481 hypothetical protein; Provisional
Probab=46.20 E-value=1.9e+02 Score=24.78 Aligned_cols=86 Identities=12% Similarity=0.146 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe
Q 018327 33 MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV 112 (358)
Q Consensus 33 li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~ 112 (358)
+|...+..+.. -+++-|++.+. +++.++.++|... +.++.+.......++.+.+..+...+..... +++++.|=-
T Consensus 118 ~i~~lv~Al~~--g~riGVitP~~-~qi~~~~~kw~~~-G~~v~~~~aspy~~~~~~l~~aa~~L~~~ga-D~Ivl~C~G 192 (224)
T PRK10481 118 ILPPLVAAIVG--GHQVGVIVPVE-EQLAQQAQKWQVL-QKPPVFALASPYHGSEEELIDAGKELLDQGA-DVIVLDCLG 192 (224)
T ss_pred hHHHHHHHhcC--CCeEEEEEeCH-HHHHHHHHHHHhc-CCceeEeecCCCCCCHHHHHHHHHHhhcCCC-CEEEEeCCC
Confidence 44555566543 48888887764 6677777777554 7666554433333566677777776654444 888888877
Q ss_pred eeccCHHHHHHH
Q 018327 113 ISEYPFAEMIEF 124 (358)
Q Consensus 113 i~~~~l~~~~~~ 124 (358)
+.. ...+.++.
T Consensus 193 ~~~-~~~~~le~ 203 (224)
T PRK10481 193 YHQ-RHRDLLQK 203 (224)
T ss_pred cCH-HHHHHHHH
Confidence 764 34444444
No 337
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=45.88 E-value=2.4e+02 Score=25.85 Aligned_cols=102 Identities=15% Similarity=0.132 Sum_probs=53.1
Q ss_pred ccccCCcc-hHHHHHHHHHHC--C--CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcC------------CCc
Q 018327 25 LVEFANKP-MILHQIEALKAV--G--VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPL------------GTA 87 (358)
Q Consensus 25 llpi~g~p-li~~~l~~l~~~--g--i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~------------g~~ 87 (358)
++...|+| -+.++|+.|.++ + ..+++|...-..++..+.++.+. ..+........... +.+
T Consensus 5 lv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~--~~i~~i~~~~~~~~~~~~~~~~~~y~~ia 82 (334)
T cd02514 5 LVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFG--DGVTHIQHPPISIKNVNPPHKFQGYYRIA 82 (334)
T ss_pred EEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhc--cccEEEEcccccccccCcccccchhhHHH
Confidence 45567999 799999999987 3 45566664444444555555532 12221111111111 112
Q ss_pred hHHHHHHhhccC-CCCCcEEEEeCCeeeccCH----HHHHHHHHhc
Q 018327 88 GPLALARDKLID-DTGEPFFVLNSDVISEYPF----AEMIEFHKAH 128 (358)
Q Consensus 88 ~sl~~~~~~i~~-~~~~~~lv~~gD~i~~~~l----~~~~~~~~~~ 128 (358)
.....++..+-. ...+.++++-.|++...++ +.++..+...
T Consensus 83 ~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D 128 (334)
T cd02514 83 RHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEED 128 (334)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcC
Confidence 211123333211 1224899999999887773 4444444433
No 338
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=45.72 E-value=1.8e+02 Score=26.00 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=19.2
Q ss_pred HHHHHHHHHHCCC-CEEEEEeccChHHHHHHHHhhhhccCcEEEEe
Q 018327 34 ILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFEAKLGIKIICS 78 (358)
Q Consensus 34 i~~~l~~l~~~gi-~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 78 (358)
++..++......+ -+|.+|++++.+ ..++ .+..+++..+.
T Consensus 107 l~al~~~~~~~~l~~~i~~visn~~~-~~~~----A~~~gIp~~~~ 147 (289)
T PRK13010 107 LNDLLYRWRMGELDMDIVGIISNHPD-LQPL----AVQHDIPFHHL 147 (289)
T ss_pred HHHHHHHHHCCCCCcEEEEEEECChh-HHHH----HHHcCCCEEEe
Confidence 3445555554432 455555555533 2322 33446666544
No 339
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=45.24 E-value=1.5e+02 Score=27.64 Aligned_cols=85 Identities=9% Similarity=0.108 Sum_probs=50.3
Q ss_pred CCcchHHHHHHHHHHCCCCEEEEEeccChHH--HHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEE
Q 018327 29 ANKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFF 106 (358)
Q Consensus 29 ~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~l 106 (358)
-|+-.+...-+.+.+.|.+++.|+++....+ +.+.+.+..+..++.+......++.-+.+.+..+.+..++... +++
T Consensus 12 fG~g~l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-D~I 90 (379)
T TIGR02638 12 FGAGAIEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGA-DYL 90 (379)
T ss_pred ECcCHHHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCC-CEE
Confidence 3666788888888888999999999864222 2223333223335555444444444556777777777654444 555
Q ss_pred E-EeCCeee
Q 018327 107 V-LNSDVIS 114 (358)
Q Consensus 107 v-~~gD~i~ 114 (358)
| +-|-.+.
T Consensus 91 iaiGGGSvi 99 (379)
T TIGR02638 91 IAIGGGSPI 99 (379)
T ss_pred EEeCChHHH
Confidence 5 4444443
No 340
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=44.58 E-value=2.4e+02 Score=25.55 Aligned_cols=94 Identities=15% Similarity=0.189 Sum_probs=58.5
Q ss_pred CCcchHHHHHHHHHHC--CCCEEEEEeccCh---HHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCC
Q 018327 29 ANKPMILHQIEALKAV--GVTEVVLAINYQP---EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGE 103 (358)
Q Consensus 29 ~g~pli~~~l~~l~~~--gi~~i~vv~~~~~---~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~ 103 (358)
.+..-++.+++.+... +.++|.++.+++. ..+.+.+.+..+..|+++....-+.. .. +..+...+. +..
T Consensus 140 sD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~-nd---i~~a~~~l~-g~~- 213 (322)
T COG2984 140 SDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSV-ND---IPRAVQALL-GKV- 213 (322)
T ss_pred CCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcc-cc---cHHHHHHhc-CCC-
Confidence 3555688888877554 6899989998864 44555555556677888764433222 11 233333332 222
Q ss_pred cEEEEeCCeeeccCHHHHHHHHHhc
Q 018327 104 PFFVLNSDVISEYPFAEMIEFHKAH 128 (358)
Q Consensus 104 ~~lv~~gD~i~~~~l~~~~~~~~~~ 128 (358)
+++..+.|.....-+..+++...+.
T Consensus 214 d~i~~p~dn~i~s~~~~l~~~a~~~ 238 (322)
T COG2984 214 DVIYIPTDNLIVSAIESLLQVANKA 238 (322)
T ss_pred cEEEEecchHHHHHHHHHHHHHHHh
Confidence 8889999996655677777765543
No 341
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=43.50 E-value=46 Score=30.62 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=43.6
Q ss_pred cccCcCCCCCCCcccccCCcc-hHHHHHHHHHHC-CCCEEEEEeccC--hHHHHHHHHh
Q 018327 12 TRLRPLTLSVPKPLVEFANKP-MILHQIEALKAV-GVTEVVLAINYQ--PEVMLNFLKE 66 (358)
Q Consensus 12 ~rl~~~t~~~pK~llpi~g~p-li~~~l~~l~~~-gi~~i~vv~~~~--~~~i~~~l~~ 66 (358)
..++|+....+.-++.+.+|| .+.+.|+.|.++ ||++..+|.+++ .+++.+.+++
T Consensus 23 ~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~ 81 (356)
T PF05060_consen 23 DKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQS 81 (356)
T ss_pred hhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHh
Confidence 345666666677788889999 899999999777 699999999974 4777777775
No 342
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=43.03 E-value=1e+02 Score=23.14 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHCCCCEEEEEeccC--hHHHHHHHHhhhhccCcEEEEec
Q 018327 32 PMILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 32 pli~~~l~~l~~~gi~~i~vv~~~~--~~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
.-|+..++++.+.++++|++.+++. .+.+..|+.+..+..++++..+-
T Consensus 43 l~i~~L~~ri~~~~i~EVIlA~~pt~EGe~Ta~yi~~~l~~~~~kvsRlA 92 (112)
T cd01025 43 LNIDKLLERIAKGQVKEVILATNPTVEGEATALYIAKLLKDFGVKVTRLA 92 (112)
T ss_pred cCHHHHHHHHhcCCCcEEEEecCCCchHHHHHHHHHHHHhHcCCCeEEEE
Confidence 3677777888888899999999984 46778888876666666665443
No 343
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=41.13 E-value=2.7e+02 Score=27.25 Aligned_cols=98 Identities=8% Similarity=0.069 Sum_probs=56.9
Q ss_pred cccccCCc-chHHHHHHHH-HHCCC--CEEEEEeccChHHHHHHHHhhhhcc-CcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327 24 PLVEFANK-PMILHQIEAL-KAVGV--TEVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLI 98 (358)
Q Consensus 24 ~llpi~g~-pli~~~l~~l-~~~gi--~~i~vv~~~~~~~i~~~l~~~~~~~-~~~i~~~~~~~~~g~~~sl~~~~~~i~ 98 (358)
-++|-.|- ..|..+++++ .+..- -+|+|+.....++..+-++++.+++ ++.+.......+.+.+.++-.+.+.+.
T Consensus 70 IlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~ 149 (504)
T PRK14716 70 IFVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIF 149 (504)
T ss_pred EEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 35555444 4899999975 44432 2566665444455555555543332 355444444555667788877765541
Q ss_pred ---CCC---CCcEEEEeCCeeeccC-HHHH
Q 018327 99 ---DDT---GEPFFVLNSDVISEYP-FAEM 121 (358)
Q Consensus 99 ---~~~---~~~~lv~~gD~i~~~~-l~~~ 121 (358)
+.. -|-+++..+|.+.+.+ ++.+
T Consensus 150 ~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~ 179 (504)
T PRK14716 150 AFERERGIRFAIIVLHDAEDVIHPLELRLY 179 (504)
T ss_pred HhhhhcCCCcCEEEEEcCCCCcCccHHHHH
Confidence 111 1478899999988777 4443
No 344
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=39.76 E-value=1.7e+02 Score=22.39 Aligned_cols=100 Identities=11% Similarity=0.117 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHCC-CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC----CcCCCchHHH--HHHhhccCCCCCc
Q 018327 32 PMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET----EPLGTAGPLA--LARDKLIDDTGEP 104 (358)
Q Consensus 32 pli~~~l~~l~~~g-i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~----~~~g~~~sl~--~~~~~i~~~~~~~ 104 (358)
+-....++.+...| +..+.+..+...+...++... .+..++.+...... .....++... .+.....+...+.
T Consensus 20 ~~~~~l~~~i~~~~~~~~~~~y~~~~~~~~~~~~~~-L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~ 98 (146)
T PF01936_consen 20 IDFERLLEEIRKYGPLVRIRAYGNWDDPNQKSFQEA-LQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDT 98 (146)
T ss_dssp B-HHHHHHHHTTTEEEEEEEEEE----HHHHHHHHH-HHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeeccccchhhHHHH-HHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCE
Confidence 34555666666654 445666666333333333332 24446665544331 1222222211 2222332121248
Q ss_pred EEEEeCCeeeccCHHHHHHHHHhcCCeeEEEe
Q 018327 105 FFVLNSDVISEYPFAEMIEFHKAHGGEASIMV 136 (358)
Q Consensus 105 ~lv~~gD~i~~~~l~~~~~~~~~~~~~~~~~~ 136 (358)
++++.||. |+..+++..++.+....++.
T Consensus 99 ivLvSgD~----Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 99 IVLVSGDS----DFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp EEEE---G----GGHHHHHHHHHH--EEEEEE
T ss_pred EEEEECcH----HHHHHHHHHHHcCCEEEEEE
Confidence 99999994 78888888887776555553
No 345
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=39.07 E-value=1e+02 Score=21.36 Aligned_cols=37 Identities=8% Similarity=0.164 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHCCCCEEEEEeccC----hHHHHHHHHhhh
Q 018327 32 PMILHQIEALKAVGVTEVVLAINYQ----PEVMLNFLKEFE 68 (358)
Q Consensus 32 pli~~~l~~l~~~gi~~i~vv~~~~----~~~i~~~l~~~~ 68 (358)
..++..|+.+...+.+.+.|+++.. ...+++.+.+|.
T Consensus 13 ~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L 53 (83)
T PF01713_consen 13 RALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWL 53 (83)
T ss_dssp HHHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHH
Confidence 4678888999899999999999987 444666666654
No 346
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=38.96 E-value=49 Score=25.19 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=18.1
Q ss_pred CcchHHHHHHHHHHCCCCEEEEE
Q 018327 30 NKPMILHQIEALKAVGVTEVVLA 52 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv 52 (358)
+.|-++..++.+.+.|.++++|+
T Consensus 44 ~~P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 44 NEPTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Confidence 56888888888888888877764
No 347
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=37.95 E-value=2.5e+02 Score=26.58 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=46.3
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccCh------HHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCC
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQP------EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGE 103 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~------~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~ 103 (358)
|+-.++..-+.+.+.|.+++.|+++... +.+.+.|+ ..++.+......++.-+.+.+..+.+..++...
T Consensus 7 G~g~~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~----~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~- 81 (414)
T cd08190 7 GPGVTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLE----AAGINFEVYDDVRVEPTDESFKDAIAFAKKGQF- 81 (414)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHH----HcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCC-
Confidence 5556778878888888899999998642 33333333 234554433333333456677777777654444
Q ss_pred cEEEE-eCCee
Q 018327 104 PFFVL-NSDVI 113 (358)
Q Consensus 104 ~~lv~-~gD~i 113 (358)
+++|- -|-.+
T Consensus 82 D~IIaiGGGSv 92 (414)
T cd08190 82 DAFVAVGGGSV 92 (414)
T ss_pred CEEEEeCCccH
Confidence 55444 34433
No 348
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=37.07 E-value=2.6e+02 Score=25.96 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=48.6
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccChHH--HHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEE
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv 107 (358)
|+-.+++.-+.+...|.+++.||++....+ ..+.+.+..+..++.+......++.-+.+.+..+.+.+++... +++|
T Consensus 10 G~g~l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-d~II 88 (374)
T cd08189 10 GSGSLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGC-DAIL 88 (374)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCC-CEEE
Confidence 566788887888888889999998864322 1122222222335555444344444556677777777655444 5655
Q ss_pred -EeCCeee
Q 018327 108 -LNSDVIS 114 (358)
Q Consensus 108 -~~gD~i~ 114 (358)
+-|-.+.
T Consensus 89 aiGGGS~~ 96 (374)
T cd08189 89 AVGGGSVI 96 (374)
T ss_pred EeCCccHH
Confidence 4444443
No 349
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=36.84 E-value=2.5e+02 Score=23.67 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=11.1
Q ss_pred eEEEEecCCccccCc
Q 018327 2 KALILVGGFGTRLRP 16 (358)
Q Consensus 2 ~avIla~G~g~rl~~ 16 (358)
+.+|||.|.|+.|..
T Consensus 1 ki~vl~Sg~Gsn~~a 15 (207)
T PLN02331 1 KLAVFVSGGGSNFRA 15 (207)
T ss_pred CEEEEEeCCChhHHH
Confidence 457888888888743
No 350
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=36.32 E-value=2.5e+02 Score=26.12 Aligned_cols=83 Identities=11% Similarity=0.110 Sum_probs=47.4
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccChHH--HHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEE
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv 107 (358)
|+-.++..-+.+...|.+++.|+++....+ ..+.+.+..+..++.+......++.-+.+.+..+.+..+.... +++|
T Consensus 12 G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~-D~II 90 (377)
T cd08176 12 GAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGC-DFII 90 (377)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCC-CEEE
Confidence 666788888888888889999998864322 2223333223335555443333333455667777766654444 5555
Q ss_pred E-eCCee
Q 018327 108 L-NSDVI 113 (358)
Q Consensus 108 ~-~gD~i 113 (358)
- -|-.+
T Consensus 91 avGGGS~ 97 (377)
T cd08176 91 SIGGGSP 97 (377)
T ss_pred EeCCcHH
Confidence 4 44343
No 351
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=35.94 E-value=99 Score=28.38 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=45.8
Q ss_pred cccCCcc---hHHHHHHHHHHC-CCCEEEEEeccChHHHHHHHHhhhhccCcE--EEEeccCCcCCC----chHHHHHHh
Q 018327 26 VEFANKP---MILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEAKLGIK--IICSQETEPLGT----AGPLALARD 95 (358)
Q Consensus 26 lpi~g~p---li~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~--i~~~~~~~~~g~----~~sl~~~~~ 95 (358)
+-.+.+| ++...+..|.+. +++..+++++.+...+.+.++.+ ++. +.........+. +..+....+
T Consensus 5 ~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (365)
T TIGR00236 5 IVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLF----HLPPDYDLNIMSPGQTLGEITSNMLEGLEE 80 (365)
T ss_pred EEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhc----CCCCCeeeecCCCCCCHHHHHHHHHHHHHH
Confidence 3445565 666778888875 68889999998765444444432 322 211111111222 223333444
Q ss_pred hccCCCCCcEEEEeCCee
Q 018327 96 KLIDDTGEPFFVLNSDVI 113 (358)
Q Consensus 96 ~i~~~~~~~~lv~~gD~i 113 (358)
.++.... +++++.||..
T Consensus 81 ~l~~~~p-Div~~~gd~~ 97 (365)
T TIGR00236 81 LLLEEKP-DIVLVQGDTT 97 (365)
T ss_pred HHHHcCC-CEEEEeCCch
Confidence 4544344 8899999973
No 352
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=35.74 E-value=2.3e+02 Score=25.23 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHCCC-CEEEEEeccChHHHHHHHHhhhhccCcEEEEec
Q 018327 33 MILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 33 li~~~l~~l~~~gi-~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
-++..++....-.. -+|.+|++++. ....+ .++.+++..+..
T Consensus 97 nl~~l~~~~~~g~l~~~i~~visn~~-~~~~~----A~~~gIp~~~~~ 139 (280)
T TIGR00655 97 CLGDLLWRWYSGELDAEIALVISNHE-DLRSL----VERFGIPFHYIP 139 (280)
T ss_pred hHHHHHHHHHcCCCCcEEEEEEEcCh-hHHHH----HHHhCCCEEEcC
Confidence 34445555544332 35555555542 23332 234466665443
No 353
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=35.12 E-value=2.9e+02 Score=25.56 Aligned_cols=84 Identities=7% Similarity=0.025 Sum_probs=46.7
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccChHH--HHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEE
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv 107 (358)
|+-.+...-+.+...|.++++|+++....+ ..+.+.+..+..++.+......++.-+.+.+..+.+..+.... +++|
T Consensus 8 G~g~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-d~II 86 (370)
T cd08192 8 GAGAIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGC-DGVI 86 (370)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCC-CEEE
Confidence 555677777888888889999998864221 1222332222234554433333344455667777776654444 6665
Q ss_pred -EeCCeee
Q 018327 108 -LNSDVIS 114 (358)
Q Consensus 108 -~~gD~i~ 114 (358)
+-|-.+.
T Consensus 87 aiGGGSvi 94 (370)
T cd08192 87 AFGGGSAL 94 (370)
T ss_pred EeCCchHH
Confidence 4444443
No 354
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=34.72 E-value=3.2e+02 Score=25.37 Aligned_cols=80 Identities=9% Similarity=0.001 Sum_probs=45.3
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccChHH--HHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEE
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv 107 (358)
|+-.++..-+.+...+.+++.||++....+ ..+.+.+..+..++.+.......+.-+.+.+..+.+..+.... +++|
T Consensus 7 G~g~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-D~II 85 (375)
T cd08194 7 GEGAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGC-DVII 85 (375)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCC-CEEE
Confidence 556677777777777888999999864322 2222333223335555433333333456667777766654444 5555
Q ss_pred EeC
Q 018327 108 LNS 110 (358)
Q Consensus 108 ~~g 110 (358)
--|
T Consensus 86 aiG 88 (375)
T cd08194 86 ALG 88 (375)
T ss_pred EeC
Confidence 433
No 355
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=34.56 E-value=2.9e+02 Score=23.43 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=32.2
Q ss_pred cCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee-ccC-HHHHHHHHHhcCCeeEEEe
Q 018327 80 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EYP-FAEMIEFHKAHGGEASIMV 136 (358)
Q Consensus 80 ~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~-~~~-l~~~~~~~~~~~~~~~~~~ 136 (358)
.....+.+.+.-++.+.- +. +.++.+.-|+.. +.+ +.++++.+.+...-..+.+
T Consensus 36 ~~~~~s~~~~yN~a~~~a--~~-~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGv 91 (217)
T PF13712_consen 36 VRNAKSMAAAYNEAMEKA--KA-KYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGV 91 (217)
T ss_dssp SSS-S-TTTHHHHHGGG----S-SEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEES
T ss_pred cCCCcCHHHHHHHHHHhC--CC-CEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEe
Confidence 334467777777777664 33 388889999955 456 6888888766555444444
No 356
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=34.32 E-value=3.3e+02 Score=26.55 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=51.1
Q ss_pred ccccCCc--chHHHHHHHHHHCC------CCEEEEEecc--Ch---HHHHHHHHhhhhcc-CcEEEEeccC-CcCCCchH
Q 018327 25 LVEFANK--PMILHQIEALKAVG------VTEVVLAINY--QP---EVMLNFLKEFEAKL-GIKIICSQET-EPLGTAGP 89 (358)
Q Consensus 25 llpi~g~--pli~~~l~~l~~~g------i~~i~vv~~~--~~---~~i~~~l~~~~~~~-~~~i~~~~~~-~~~g~~~s 89 (358)
.+|+.|+ .-+.+.|+++.+.- ..-++|+... +. .++++.+.++.+++ ...+.++... +....+.+
T Consensus 252 IvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~ 331 (499)
T PF05679_consen 252 IVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAA 331 (499)
T ss_pred EEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHH
Confidence 5788887 58888888887762 2223333332 11 23445666655443 3455555444 55567777
Q ss_pred HHHHHhhccCCCCCcEEEEeCCeeeccCH
Q 018327 90 LALARDKLIDDTGEPFFVLNSDVISEYPF 118 (358)
Q Consensus 90 l~~~~~~i~~~~~~~~lv~~gD~i~~~~l 118 (358)
+..+.+.+ ..++=++++..|+.++.++
T Consensus 332 Ld~g~~~~--~~d~L~f~~Dvd~~f~~~f 358 (499)
T PF05679_consen 332 LDVGAKKF--PPDSLLFFCDVDMVFTSDF 358 (499)
T ss_pred HHhhcccC--CCCcEEEEEeCCcccCHHH
Confidence 77777766 3322344445555555443
No 357
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=34.29 E-value=51 Score=24.25 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.7
Q ss_pred CcchHHHHHHHHHHCCCCEEEEE
Q 018327 30 NKPMILHQIEALKAVGVTEVVLA 52 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv 52 (358)
+.|-++..++.+...|.++|+++
T Consensus 40 ~~P~i~~~l~~l~~~G~~~i~lv 62 (103)
T cd03413 40 GYPGLDDVLAKLKKAGIKKVTLM 62 (103)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Confidence 78889999999999898888765
No 358
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=34.11 E-value=3.4e+02 Score=25.08 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=45.1
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccChH---HHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEE
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQPE---VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFF 106 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~---~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~l 106 (358)
|.=.+++.-+.+...|.+++.||++.... .+.+.++ ..++.+......++.-+.+.+..+.+.+++... +++
T Consensus 7 G~g~l~~l~~~~~~~g~~~~livtd~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~-D~I 81 (367)
T cd08182 7 GRGAIAKLPSLLKGLGGKRVLLVTGPRSAIASGLTDILK----PLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGP-DAV 81 (367)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEeCchHHHHHHHHHHHH----HcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCc-CEE
Confidence 44456777777777788999999987533 3333333 234444433333344456677777777754444 566
Q ss_pred EEeCC
Q 018327 107 VLNSD 111 (358)
Q Consensus 107 v~~gD 111 (358)
|.-|.
T Consensus 82 IavGG 86 (367)
T cd08182 82 LAVGG 86 (367)
T ss_pred EEeCC
Confidence 64443
No 359
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=33.96 E-value=1.2e+02 Score=26.04 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHCCCCEEEEEeccCh--HHHHHHHHhhhhc-cCcEEEEe
Q 018327 33 MILHQIEALKAVGVTEVVLAINYQP--EVMLNFLKEFEAK-LGIKIICS 78 (358)
Q Consensus 33 li~~~l~~l~~~gi~~i~vv~~~~~--~~i~~~l~~~~~~-~~~~i~~~ 78 (358)
++..++++|.+.|+++++++-++.. ..+....+++.++ .++.+...
T Consensus 87 ~l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~~l~~~~~~~~v~~~ 135 (237)
T PF02633_consen 87 LLRDILRSLARHGFRRIVIVNGHGGNIAALEAAARELRQEYPGVKVFVI 135 (237)
T ss_dssp HHHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHHHHHHHGCC-EEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 6777788999999999999999842 3455666666555 56665443
No 360
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=33.81 E-value=63 Score=23.00 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=23.3
Q ss_pred cccCCcchHHHHHHHHHH--CCCCEEEEEecc
Q 018327 26 VEFANKPMILHQIEALKA--VGVTEVVLAINY 55 (358)
Q Consensus 26 lpi~g~pli~~~l~~l~~--~gi~~i~vv~~~ 55 (358)
.-+++||++.|.+.-+.. .|.+++++-..-
T Consensus 4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKarG 35 (87)
T TIGR00285 4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKARG 35 (87)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 347899999999987764 578888886654
No 361
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=33.74 E-value=2.1e+02 Score=21.71 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=36.7
Q ss_pred HHHHHHHCCCCEEEEEeccC-hHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCe--e
Q 018327 37 QIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--I 113 (358)
Q Consensus 37 ~l~~l~~~gi~~i~vv~~~~-~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~--i 113 (358)
+|+.+.+...-+++|..... .......+.. ..+..+ ..| ...+.++.+.++.+......+ .++++-+|. +
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~--~~Q-~g~dLG~Rm~~a~~~~~~g~~-~vvliGsD~P~l 73 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDHAAFRQLWL---PSGFSF--FPQ-QGGDLGERMANAFQQAARGYE-PVVLIGSDCPDL 73 (122)
T ss_dssp -------TSSSEEEEEE----TTHHHHHHHH----TTSEE--EE---SSSHHHHHHHHHHHHHTT-S-EEEEE-SS-TT-
T ss_pred CccccccCCCcCEEEEEcCCccHHHHhcccc---CCCCEE--eec-CCCCHHHHHHHHHHHHHcCCC-cEEEEcCCCCCC
Confidence 35666666666666666653 2222222111 112333 344 334667888888877743444 999999999 4
Q ss_pred eccCHHHHHHHHH
Q 018327 114 SEYPFAEMIEFHK 126 (358)
Q Consensus 114 ~~~~l~~~~~~~~ 126 (358)
....+.+..+...
T Consensus 74 ~~~~l~~A~~~L~ 86 (122)
T PF09837_consen 74 TPDDLEQAFEALQ 86 (122)
T ss_dssp -HHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhc
Confidence 4444555555543
No 362
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=33.61 E-value=3.4e+02 Score=25.07 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=46.6
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccChHH--HHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEE
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv 107 (358)
|.-.++..-+.+...|.+++.|+++....+ ..+.+.+..+..++.+......++.-+.+.+..+.+.++.... +++|
T Consensus 7 G~g~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~-d~Ii 85 (370)
T cd08551 7 GAGAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGC-DGVI 85 (370)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCC-CEEE
Confidence 455677888888888889999999874322 2222222222224444433333333456667777766654444 5555
Q ss_pred -EeCCeee
Q 018327 108 -LNSDVIS 114 (358)
Q Consensus 108 -~~gD~i~ 114 (358)
+-|-.+.
T Consensus 86 aiGGGs~~ 93 (370)
T cd08551 86 AVGGGSVL 93 (370)
T ss_pred EeCCchHH
Confidence 4444444
No 363
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=32.82 E-value=1.8e+02 Score=21.65 Aligned_cols=71 Identities=15% Similarity=0.068 Sum_probs=33.5
Q ss_pred HHHHHHHHCCCCEEEEEeccChHH---HHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEE
Q 018327 36 HQIEALKAVGVTEVVLAINYQPEV---MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (358)
Q Consensus 36 ~~l~~l~~~gi~~i~vv~~~~~~~---i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv 107 (358)
.-+..+.+.|++.|+-.-....+. ....+++..+..|+...+++-....-+.+.+....+.+.... .++|+
T Consensus 18 ~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~-~Pvl~ 91 (110)
T PF04273_consen 18 EDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLP-KPVLA 91 (110)
T ss_dssp HHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTT-TSEEE
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCC-CCEEE
Confidence 446788899999988776543211 112233444566888777765544344555666666664433 37654
No 364
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=32.68 E-value=3.4e+02 Score=25.22 Aligned_cols=81 Identities=7% Similarity=0.088 Sum_probs=44.8
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccChHH--HHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEE
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv 107 (358)
|.-.+.+.-+.+...|.+++.||++..... ..+.+.+..+..++.+.......+.-+.+.+..+.+..+.... +++|
T Consensus 12 G~g~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-d~II 90 (377)
T cd08188 12 GRGALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGC-DVII 90 (377)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCC-CEEE
Confidence 666778877778888889999998864222 2222332222234444433323333345566666666654444 5555
Q ss_pred EeCC
Q 018327 108 LNSD 111 (358)
Q Consensus 108 ~~gD 111 (358)
.-|-
T Consensus 91 aiGG 94 (377)
T cd08188 91 AVGG 94 (377)
T ss_pred EeCC
Confidence 4433
No 365
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=32.18 E-value=3.5e+02 Score=25.32 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=48.7
Q ss_pred CCcchHHHHHHHHHHCCCCEEEEEeccC------hHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327 29 ANKPMILHQIEALKAVGVTEVVLAINYQ------PEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (358)
Q Consensus 29 ~g~pli~~~l~~l~~~gi~~i~vv~~~~------~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~ 102 (358)
-|.=-+.+..+.....|.+++.||++.. .+.+.+.|+. .++.......-.+.=+.+.+..+.+..++...
T Consensus 12 fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~----~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~ 87 (377)
T COG1454 12 FGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDA----AGIEYEVFDEVEPEPTIETVEAGAEVAREFGP 87 (377)
T ss_pred ecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHh----cCCeEEEecCCCCCCCHHHHHHHHHHHHhcCC
Confidence 3666788888888888999999999984 2344444443 24454444444444456677777777765555
Q ss_pred CcEEEEeC
Q 018327 103 EPFFVLNS 110 (358)
Q Consensus 103 ~~~lv~~g 110 (358)
+++|.-|
T Consensus 88 -D~iIalG 94 (377)
T COG1454 88 -DTIIALG 94 (377)
T ss_pred -CEEEEeC
Confidence 5555433
No 366
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=31.49 E-value=5e+02 Score=26.78 Aligned_cols=100 Identities=10% Similarity=0.092 Sum_probs=59.5
Q ss_pred ccccCCcc-hHHHHHHHHH-HCC--CCEEEEEeccChHHHHHHHHhhhhcc-CcEEEEeccCCcCCCchHHHHHHhhccC
Q 018327 25 LVEFANKP-MILHQIEALK-AVG--VTEVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLID 99 (358)
Q Consensus 25 llpi~g~p-li~~~l~~l~-~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~-~~~i~~~~~~~~~g~~~sl~~~~~~i~~ 99 (358)
|.|..|-. .|..+++++. ... --+|++++....+...+.++++.+.+ .+.+.......+.|-+.++-.+.+.+.+
T Consensus 68 lVPa~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN~~l~~~~~ 147 (727)
T PRK11234 68 MVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQ 147 (727)
T ss_pred EEecCcchhhHHHHHHHHHHhCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 44665554 8889999775 333 23666665444344555556554433 3444444444567888899888877632
Q ss_pred C----C--CCcEEEEeCCeeeccC-HHHHHHHH
Q 018327 100 D----T--GEPFFVLNSDVISEYP-FAEMIEFH 125 (358)
Q Consensus 100 ~----~--~~~~lv~~gD~i~~~~-l~~~~~~~ 125 (358)
. . -+-+++..+|.+...+ |+ ++...
T Consensus 148 ~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l 179 (727)
T PRK11234 148 FERSANFAFAGFILHDAEDVISPMELR-LFNYL 179 (727)
T ss_pred hhcccCCcccEEEEEcCCCCCChhHHH-HHHhh
Confidence 1 1 1246788999988877 55 44443
No 367
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.37 E-value=1.6e+02 Score=24.54 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHCCCCEEEEEeccC--hHHHHHHHHhhhhccCcEEEEe
Q 018327 33 MILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEAKLGIKIICS 78 (358)
Q Consensus 33 li~~~l~~l~~~gi~~i~vv~~~~--~~~i~~~l~~~~~~~~~~i~~~ 78 (358)
-|+..++++.+.++++|++.+++. .+.+..|+.+..+.+++++..+
T Consensus 122 ~i~~L~~Ri~~~~v~EVIlAt~~tvEGe~Ta~yi~~~lk~~~ikvtRl 169 (195)
T TIGR00615 122 TIAALLKRLQEESVKEVILATNPTVEGEATALYIARLLQPFGVKVTRI 169 (195)
T ss_pred CHHHHHHHHhcCCCcEEEEeCCCCchHHHHHHHHHHHhhhcCCcEEee
Confidence 577778888887899999999984 5678888888666666666544
No 368
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=31.30 E-value=3.7e+02 Score=24.97 Aligned_cols=80 Identities=13% Similarity=0.034 Sum_probs=45.5
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccChHH--HHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEE
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv 107 (358)
|+-.++..-+.+...|.+++.|+++....+ ..+.+.+..+..++.+......++.-+.+.+..+.+.+++... +++|
T Consensus 10 G~g~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-D~II 88 (376)
T cd08193 10 GAGSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGA-DGVI 88 (376)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCC-CEEE
Confidence 555677777778877889999998864211 2222322222334555433334444566677777777654444 5555
Q ss_pred EeC
Q 018327 108 LNS 110 (358)
Q Consensus 108 ~~g 110 (358)
--|
T Consensus 89 aiG 91 (376)
T cd08193 89 GFG 91 (376)
T ss_pred EeC
Confidence 443
No 369
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=30.47 E-value=4e+02 Score=23.90 Aligned_cols=88 Identities=13% Similarity=0.187 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHCC-----CCEEEEEecc-ChHHHHHHHHhhhhccC-cEEEEeccCCcCCCchHHHHHHhhccCCCCCcE
Q 018327 33 MILHQIEALKAVG-----VTEVVLAINY-QPEVMLNFLKEFEAKLG-IKIICSQETEPLGTAGPLALARDKLIDDTGEPF 105 (358)
Q Consensus 33 li~~~l~~l~~~g-----i~~i~vv~~~-~~~~i~~~l~~~~~~~~-~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~ 105 (358)
|++-+++.|..-- ++.=++|++. ..+...+..-+++++.+ -.+....+.+..|-+++++...-.. .++ ..
T Consensus 85 mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~--rG~-~i 161 (323)
T KOG2977|consen 85 MLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSS--RGQ-KI 161 (323)
T ss_pred HHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhc--cCc-eE
Confidence 8999999886542 3444444554 56777777777775555 3444455556677778888776555 333 67
Q ss_pred EEEeCCeeecc-CHHHHHH
Q 018327 106 FVLNSDVISEY-PFAEMIE 123 (358)
Q Consensus 106 lv~~gD~i~~~-~l~~~~~ 123 (358)
++..+|--+.. |+..+.+
T Consensus 162 lfadAdGaTkf~d~ekLe~ 180 (323)
T KOG2977|consen 162 LFADADGATKFADLEKLEK 180 (323)
T ss_pred EEEcCCCCccCCCHHHHHH
Confidence 77777775443 3444333
No 370
>PLN02828 formyltetrahydrofolate deformylase
Probab=29.91 E-value=1.7e+02 Score=25.94 Aligned_cols=10 Identities=10% Similarity=0.282 Sum_probs=6.1
Q ss_pred cCCHHHHHHH
Q 018327 217 IGQPRDYITG 226 (358)
Q Consensus 217 i~t~~dy~~a 226 (358)
-+|++++.+.
T Consensus 227 ~dt~~~L~~r 236 (268)
T PLN02828 227 RDNLRSFVQK 236 (268)
T ss_pred CCCHHHHHHH
Confidence 3677777544
No 371
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=29.60 E-value=3.4e+02 Score=24.22 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=5.8
Q ss_pred CCHHHHHHHH
Q 018327 218 GQPRDYITGL 227 (358)
Q Consensus 218 ~t~~dy~~a~ 227 (358)
+|++++.+.-
T Consensus 246 dt~~~L~~r~ 255 (286)
T PRK13011 246 YSPEDLVAKG 255 (286)
T ss_pred CCHHHHHHHH
Confidence 5666665543
No 372
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=29.54 E-value=3.9e+02 Score=24.92 Aligned_cols=83 Identities=7% Similarity=0.090 Sum_probs=47.4
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccChHH--HHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEE
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV 107 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~--i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv 107 (358)
|+-.++..-+.+...|.+++.|+++....+ +.+.+.+..+..++.+......++.-+.+.+..+.+.+++... +++|
T Consensus 14 G~g~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-D~II 92 (382)
T PRK10624 14 GRGAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGA-DYLI 92 (382)
T ss_pred CcCHHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCC-CEEE
Confidence 666788888888888889999998863221 2222332223335555443333333445677777766654444 5655
Q ss_pred -EeCCee
Q 018327 108 -LNSDVI 113 (358)
Q Consensus 108 -~~gD~i 113 (358)
+-|-.+
T Consensus 93 aiGGGS~ 99 (382)
T PRK10624 93 AIGGGSP 99 (382)
T ss_pred EeCChHH
Confidence 444343
No 373
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=29.03 E-value=2.8e+02 Score=21.85 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=53.1
Q ss_pred ccCCc-chHHHHHHHHHHCCCC--EEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCC
Q 018327 27 EFANK-PMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGE 103 (358)
Q Consensus 27 pi~g~-pli~~~l~~l~~~gi~--~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~ 103 (358)
|.-|. ..|..+|+.+.+.... +++||-+...+...+.+.++.... ..+.........|...+...+.... .. +
T Consensus 10 p~~n~~~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~--~~-~ 85 (291)
T COG0463 10 PTYNEEEYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKD-VRVIRLINERNGGLGAARNAGLEYA--RG-D 85 (291)
T ss_pred eccchhhhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhc-ceEEEeecccCCChHHHHHhhHHhc--cC-C
Confidence 44344 4888889988877633 455544444555555555543221 1233333344567777888777777 33 3
Q ss_pred cEEEEeCCeeeccC-HHH
Q 018327 104 PFFVLNSDVISEYP-FAE 120 (358)
Q Consensus 104 ~~lv~~gD~i~~~~-l~~ 120 (358)
.++.+.+|.+ ..+ +..
T Consensus 86 ~~~~~d~d~~-~~~~~~~ 102 (291)
T COG0463 86 YIVFLDADDQ-HPPELIP 102 (291)
T ss_pred EEEEEccCCC-CCHHHHH
Confidence 8888889988 654 444
No 374
>PRK04946 hypothetical protein; Provisional
Probab=28.56 E-value=1.1e+02 Score=25.35 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=39.1
Q ss_pred CCCcccccCCc------chHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhcc
Q 018327 21 VPKPLVEFANK------PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKL 71 (358)
Q Consensus 21 ~pK~llpi~g~------pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~ 71 (358)
.|..-|.+.|. ..|...|+.+...|+..+.|+-+.+...+++++..|.+..
T Consensus 93 ~~~~~LDLhG~~~eeA~~~L~~fl~~a~~~g~r~v~IIHGkG~gvLk~~V~~wL~q~ 149 (181)
T PRK04946 93 SPELFLDLHGLTQLQAKQELGALIAACRKEHVFCACVMHGHGKHILKQQTPLWLAQH 149 (181)
T ss_pred CCceEEECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHhHHHHHHHHHHcCC
Confidence 34455566554 4677788888888999999999998888999999886543
No 375
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=28.26 E-value=3.4e+02 Score=22.29 Aligned_cols=138 Identities=20% Similarity=0.162 Sum_probs=59.9
Q ss_pred CCCCEEEEEeccC--hHHHHHHHHhhhhccC-c-EEEEeccCC--cCCCchHHHHHHhhccCCCCCcEEEEeCCeeeccC
Q 018327 44 VGVTEVVLAINYQ--PEVMLNFLKEFEAKLG-I-KIICSQETE--PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP 117 (358)
Q Consensus 44 ~gi~~i~vv~~~~--~~~i~~~l~~~~~~~~-~-~i~~~~~~~--~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~ 117 (358)
.+++.++++.... .+.+.+.+.+....++ + ...+..... +.-+...+..+.+... ..+.++.+.-|++.+.+
T Consensus 19 ~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~--~~~~v~k~DDD~~vn~~ 96 (195)
T PF01762_consen 19 VRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCP--NAKYVLKVDDDVFVNPD 96 (195)
T ss_pred CcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCC--chhheeecCcEEEEehH
Confidence 3466666665554 4556666665444333 2 112222211 1123344444554442 12256666666777654
Q ss_pred -HHHHHHHHHhcCCeeEEEecCCCCeeeEEEcCCCCc-EEEEeecCCCCCCCeEEEEEEEEChhhhhhcc
Q 018327 118 -FAEMIEFHKAHGGEASIMVDEPSKYGVVVMEESTGK-VEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE 185 (358)
Q Consensus 118 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~l~ 185 (358)
+...+...........+....... +....+.. ++ -....+-|...-..++..+.|+++.++++.+.
T Consensus 97 ~l~~~L~~~~~~~~~~~~~g~~~~~-~~~~r~~~-~kw~v~~~~y~~~~yP~y~~G~~yvls~~~v~~i~ 164 (195)
T PF01762_consen 97 RLVSFLKSLKQDPSKNSIYGGCIKN-GPPIRDPS-SKWYVSEEEYPDDYYPPYCSGGGYVLSSDVVKRIY 164 (195)
T ss_pred HhhhhhhhcccCccccccccccccC-Cccccccc-cCceeeeeecccccCCCcCCCCeEEecHHHHHHHH
Confidence 555555441111111111100000 01111221 11 01111112222344667899999999998774
No 376
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=27.45 E-value=4.4e+02 Score=23.39 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=44.3
Q ss_pred CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC---C-----cCCCch-H---HHHHH-hhccCCCCCcEEEEeCCe
Q 018327 46 VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET---E-----PLGTAG-P---LALAR-DKLIDDTGEPFFVLNSDV 112 (358)
Q Consensus 46 i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~---~-----~~g~~~-s---l~~~~-~~i~~~~~~~~lv~~gD~ 112 (358)
.-++.|++....++..+.+.+.....+.++.+.... . +..... . .+... +.+.+. -+.+|.+.+|+
T Consensus 30 ~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~s~~y~y~RL~ip~llp~~-~dkvLYLD~Di 108 (280)
T cd06431 30 PLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEALPSD-LEKVIVLDTDI 108 (280)
T ss_pred CEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhhhhccCcccchhhHHHHHHHHHHHhchhh-cCEEEEEcCCE
Confidence 357788877655555555543223334555443321 1 001111 1 22223 344322 34999999999
Q ss_pred eeccCHHHHHHHH
Q 018327 113 ISEYPFAEMIEFH 125 (358)
Q Consensus 113 i~~~~l~~~~~~~ 125 (358)
++.-++.++.+.+
T Consensus 109 iv~~di~eL~~~~ 121 (280)
T cd06431 109 TFATDIAELWKIF 121 (280)
T ss_pred EEcCCHHHHHHHh
Confidence 9999999999875
No 377
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=27.37 E-value=1.2e+02 Score=27.66 Aligned_cols=43 Identities=21% Similarity=0.420 Sum_probs=33.3
Q ss_pred cccccCCcc-hHHHHHHHHHHC-CCCEEEEEeccC--hHHHHHHHHh
Q 018327 24 PLVEFANKP-MILHQIEALKAV-GVTEVVLAINYQ--PEVMLNFLKE 66 (358)
Q Consensus 24 ~llpi~g~p-li~~~l~~l~~~-gi~~i~vv~~~~--~~~i~~~l~~ 66 (358)
--+.+.||| .+.+++++|.+. ||++..++.+++ .+++-+.+++
T Consensus 121 lV~qVHnRp~Ylr~lveSlrk~kGI~~tLlifSHD~~~~eiN~~I~~ 167 (455)
T KOG2791|consen 121 LVLQVHNRPQYLRVLVESLRKVKGISETLLIFSHDGYFEEINRIIES 167 (455)
T ss_pred EEEEEcCcHHHHHHHHHHHHhccCccceEEEEeccchHHHHHHHHhh
Confidence 445678999 888899999877 699999988874 3566666664
No 378
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=27.23 E-value=1.1e+02 Score=24.20 Aligned_cols=50 Identities=16% Similarity=0.350 Sum_probs=27.3
Q ss_pred cCCcchH---HHHHHHHHHCCCCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEe
Q 018327 28 FANKPMI---LHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICS 78 (358)
Q Consensus 28 i~g~pli---~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~ 78 (358)
+.+.|.+ +...+.+.+.+++++++...... +.+.+.++. .+..++++..+
T Consensus 121 ~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~-~~~~~v~v~~v 174 (175)
T PF13727_consen 121 IDGVPVLGDLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEE-LENHGVRVRVV 174 (175)
T ss_dssp ETTEEEE--GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHH-HHTTT-EEEE-
T ss_pred ccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHH-HHhCCCEEEEe
Confidence 3455644 56677778888999999888753 445444444 45667776543
No 379
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=27.02 E-value=2.8e+02 Score=27.12 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=26.0
Q ss_pred CcchH-HHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhc
Q 018327 30 NKPMI-LHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAK 70 (358)
Q Consensus 30 g~pli-~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~ 70 (358)
||+.| ..+|-+-...++.-|++.++....++.++++++...
T Consensus 173 GKt~Lal~~i~~~~~~dv~~V~~~IGer~rev~e~~~~~~~~ 214 (501)
T TIGR00962 173 GKTAVAIDTIINQKDSDVYCVYVAIGQKASTVAQVVRKLEEH 214 (501)
T ss_pred CccHHHHHHHHhhcCCCeEEEEEEccCChHHHHHHHHHHHhc
Confidence 67755 233333334445456777888888999888876543
No 380
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=26.36 E-value=1.3e+02 Score=23.83 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHCCCCEEEEEecc---ChHHHHHHHH
Q 018327 33 MILHQIEALKAVGVTEVVLAINY---QPEVMLNFLK 65 (358)
Q Consensus 33 li~~~l~~l~~~gi~~i~vv~~~---~~~~i~~~l~ 65 (358)
-++++-++|..+|+++++.+... +-+++++||+
T Consensus 107 ~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 107 NIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred hHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 56777889999999999776665 3466777765
No 381
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=25.69 E-value=2.4e+02 Score=24.59 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHCCCCEEEEEeccCh-HHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhcc
Q 018327 33 MILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLI 98 (358)
Q Consensus 33 li~~~l~~l~~~gi~~i~vv~~~~~-~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~ 98 (358)
.+...-+.+.+.+.+++.+|++... +...+.+.+..+..++++..........+.+.+....+.++
T Consensus 6 a~~~l~~~l~~~~~~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 72 (250)
T PF13685_consen 6 ALDKLPEILSELGLKKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALR 72 (250)
T ss_dssp -GGGHHHHHGGGT-SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS-
T ss_pred HHHHHHHHHHhcCCCcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhc
Confidence 4555566777778899999999863 33334444433444666654433233356677777777763
No 382
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=25.30 E-value=5.1e+02 Score=23.40 Aligned_cols=91 Identities=12% Similarity=-0.019 Sum_probs=48.5
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccChH-HHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEE
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL 108 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~-~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~ 108 (358)
|+-.++..-+.+...|.++++||++.... .+.+.+.+..+.. +.+.......+.-+.+.+..+.+.+++... +++|.
T Consensus 7 G~g~l~~l~~~~~~~g~~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~-d~IIa 84 (332)
T cd07766 7 GEGAIEKIGEEIKRGGFDRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEV-DAVIA 84 (332)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCc-CEEEE
Confidence 45567777777777788999999987432 2333333322221 333222222333466677777776654434 66664
Q ss_pred eCC-eeeccCHHHHHHH
Q 018327 109 NSD-VISEYPFAEMIEF 124 (358)
Q Consensus 109 ~gD-~i~~~~l~~~~~~ 124 (358)
-|. .+. |...++..
T Consensus 85 iGGGs~~--D~aK~ia~ 99 (332)
T cd07766 85 VGGGSTL--DTAKAVAA 99 (332)
T ss_pred eCCchHH--HHHHHHHH
Confidence 444 443 34444443
No 383
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=25.01 E-value=3.5e+02 Score=23.50 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=46.9
Q ss_pred CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC-------CcCCC--chHHH-HHHh-hccCCCCCcEEEEeCCeee
Q 018327 46 VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET-------EPLGT--AGPLA-LARD-KLIDDTGEPFFVLNSDVIS 114 (358)
Q Consensus 46 i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~-------~~~g~--~~sl~-~~~~-~i~~~~~~~~lv~~gD~i~ 114 (358)
.-+++|+.+.-.++-++.+.+..+.++..+.+.... .+... ..+.+ ...+ .+.+.- +.+|.+.+|+++
T Consensus 30 ~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~~~~lLP~~v-dkvLYLD~Dilv 108 (248)
T cd06432 30 PVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLHKQTEKQRIIWGYKILFLDVLFPLNV-DKVIFVDADQIV 108 (248)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhhcccccchhHHHHHHHHHHHhhhhcc-CEEEEEcCCcee
Confidence 457788887766777777777655555544332211 01111 11122 2233 554333 499999999999
Q ss_pred ccCHHHHHHH
Q 018327 115 EYPFAEMIEF 124 (358)
Q Consensus 115 ~~~l~~~~~~ 124 (358)
.-++.++.+.
T Consensus 109 ~~dL~eL~~~ 118 (248)
T cd06432 109 RTDLKELMDM 118 (248)
T ss_pred cccHHHHHhc
Confidence 9899998876
No 384
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=24.38 E-value=4.2e+02 Score=24.73 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=47.3
Q ss_pred CCcchHHHHHHHHHHCCCCEEEEEeccCh------HHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCC
Q 018327 29 ANKPMILHQIEALKAVGVTEVVLAINYQP------EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTG 102 (358)
Q Consensus 29 ~g~pli~~~l~~l~~~gi~~i~vv~~~~~------~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~ 102 (358)
-|+=-+.+.-+.+...|.+++.|+++... +.+.+.|++ .++.+.......+.-+.+.+..+.+..++...
T Consensus 14 ~G~g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~----~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~ 89 (383)
T PRK09860 14 IGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEE----RNIFSVIYDGTQPNPTTENVAAGLKLLKENNC 89 (383)
T ss_pred ECcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHH----cCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCC
Confidence 36667788888888889999999988632 234444432 34554333333334456677777777765544
Q ss_pred CcEEEEeC
Q 018327 103 EPFFVLNS 110 (358)
Q Consensus 103 ~~~lv~~g 110 (358)
+++|--|
T Consensus 90 -D~IiaiG 96 (383)
T PRK09860 90 -DSVISLG 96 (383)
T ss_pred -CEEEEeC
Confidence 6666433
No 385
>PRK13844 recombination protein RecR; Provisional
Probab=24.36 E-value=2.6e+02 Score=23.46 Aligned_cols=45 Identities=27% Similarity=0.268 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHCCCCEEEEEeccC--hHHHHHHHHhhhhccCcEEEEe
Q 018327 33 MILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEAKLGIKIICS 78 (358)
Q Consensus 33 li~~~l~~l~~~gi~~i~vv~~~~--~~~i~~~l~~~~~~~~~~i~~~ 78 (358)
-|+..++++.+.++++|++.+++. .+....|+.+..+. ++++..+
T Consensus 126 ~i~~L~~Ri~~~~v~EVIlAt~~t~EGe~Ta~yi~~~lk~-~vkvtRl 172 (200)
T PRK13844 126 KLDILQQIIADRKIDEVILAISPTVEGETTAHFISQMIAK-DIKISRI 172 (200)
T ss_pred CHHHHHHHHhcCCCcEEEEeCCCCccHHHHHHHHHHHhcC-CCcEEee
Confidence 577777888777899999999984 56788888886655 6666544
No 386
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.63 E-value=4.4e+02 Score=22.73 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=21.7
Q ss_pred cCCcchHHHHHHHHHHCCCCEEEEEecc
Q 018327 28 FANKPMILHQIEALKAVGVTEVVLAINY 55 (358)
Q Consensus 28 i~g~pli~~~l~~l~~~gi~~i~vv~~~ 55 (358)
..+........+.|.+.|.+++.++.+.
T Consensus 100 ~d~~~~~~~a~~~L~~~G~~~I~~i~~~ 127 (269)
T cd06287 100 LQSAATARMLLEHLRAQGARQIALIVGS 127 (269)
T ss_pred eCcHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 3456677888889999999999888654
No 387
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=23.62 E-value=5.9e+02 Score=23.69 Aligned_cols=80 Identities=16% Similarity=0.129 Sum_probs=44.5
Q ss_pred CcchHHHHHHHHHHC---CCCEEEEEeccCh-------HHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccC
Q 018327 30 NKPMILHQIEALKAV---GVTEVVLAINYQP-------EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLID 99 (358)
Q Consensus 30 g~pli~~~l~~l~~~---gi~~i~vv~~~~~-------~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~ 99 (358)
|+-.++..-+.+... |.+++.|+++... +.+.+.++ ..++.+......++.-+.+.+..+.+.++.
T Consensus 7 G~g~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~----~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~ 82 (383)
T cd08186 7 GVGAIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALD----EHGIEYVLYNKVTPNPTVDQVDEAAKLGRE 82 (383)
T ss_pred CcCHHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHH----HcCCeEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 344556655556555 7789999998642 23333443 235555444334444566677777776654
Q ss_pred CCCCcEEE-EeCCeee
Q 018327 100 DTGEPFFV-LNSDVIS 114 (358)
Q Consensus 100 ~~~~~~lv-~~gD~i~ 114 (358)
... +++| +-|-.+.
T Consensus 83 ~~~-D~IIaiGGGS~i 97 (383)
T cd08186 83 FGA-QAVIAIGGGSPI 97 (383)
T ss_pred cCC-CEEEEeCCccHH
Confidence 444 5555 4444443
No 388
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=23.41 E-value=1.3e+02 Score=21.19 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=28.9
Q ss_pred HHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEe
Q 018327 37 QIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICS 78 (358)
Q Consensus 37 ~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 78 (358)
+++.+.+ |--..+++...-.+.+.+.+.++++..++++.+.
T Consensus 16 vlkaIk~-gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~ 56 (82)
T PRK13601 16 TLKAITN-CNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYI 56 (82)
T ss_pred HHHHHHc-CCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 4455544 5555666666666889999998888888888554
No 389
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=23.38 E-value=1.3e+02 Score=21.93 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=23.4
Q ss_pred cCCcchHHHHHHHHHHCCCCEEEEEecc
Q 018327 28 FANKPMILHQIEALKAVGVTEVVLAINY 55 (358)
Q Consensus 28 i~g~pli~~~l~~l~~~gi~~i~vv~~~ 55 (358)
.+|+|+.++.++.+.+.|+.-.++.-+-
T Consensus 16 ~~g~~l~~~ll~~~~~~gi~GaTV~rgi 43 (101)
T PF02641_consen 16 WGGKPLYEWLLERAREAGIAGATVFRGI 43 (101)
T ss_dssp ETTEEHHHHHHHHHHHTT-SEEEEEE-S
T ss_pred cCceEHHHHHHHHHHHCCCCeEEEEcce
Confidence 5799999999999999999998887663
No 390
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=23.21 E-value=4.8e+02 Score=22.34 Aligned_cols=78 Identities=9% Similarity=0.081 Sum_probs=43.4
Q ss_pred CCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccC-----------CcCCCchHHHHHH-hhccCCCCCcEEEEeCCee
Q 018327 46 VTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET-----------EPLGTAGPLALAR-DKLIDDTGEPFFVLNSDVI 113 (358)
Q Consensus 46 i~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~-----------~~~g~~~sl~~~~-~~i~~~~~~~~lv~~gD~i 113 (358)
.-+++|+...-.++.++.+.++.+..+..+.+.... .......-.+... +.++ .- +.+|.+.+|++
T Consensus 30 ~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~i~~llp-~~-~kvlYLD~D~i 107 (246)
T cd00505 30 PLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLHLPNLVP-DY-DKILYVDADIL 107 (246)
T ss_pred CeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCccccceeHHHHHHHHhh-cc-CeEEEEcCCee
Confidence 346677766655667777776544334443332211 1111111112222 3342 23 49999999999
Q ss_pred eccCHHHHHHHH
Q 018327 114 SEYPFAEMIEFH 125 (358)
Q Consensus 114 ~~~~l~~~~~~~ 125 (358)
+..++.++.+.-
T Consensus 108 v~~di~~L~~~~ 119 (246)
T cd00505 108 VLTDIDELWDTP 119 (246)
T ss_pred eccCHHHHhhcc
Confidence 998999998753
No 391
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=23.02 E-value=5.7e+02 Score=23.73 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=45.6
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccCh---HHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEE
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQP---EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFF 106 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~---~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~l 106 (358)
|+-.++..-+.+...| +++.||++... ..+.+.+.+..+..++.+......++.-+.+.+..+.+..++... +++
T Consensus 10 G~g~l~~l~~~~~~~g-~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~-D~I 87 (380)
T cd08185 10 GAGKLNELGEEALKPG-KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGC-DFV 87 (380)
T ss_pred CcCHHHHHHHHHHhcC-CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCC-CEE
Confidence 5567777777777767 89999998643 112223332222335555433333333455667766666654444 566
Q ss_pred E-EeCCeee
Q 018327 107 V-LNSDVIS 114 (358)
Q Consensus 107 v-~~gD~i~ 114 (358)
| +-|-.+.
T Consensus 88 iavGGGS~i 96 (380)
T cd08185 88 VGLGGGSSM 96 (380)
T ss_pred EEeCCccHH
Confidence 5 4444433
No 392
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=22.93 E-value=1.3e+02 Score=26.28 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=25.5
Q ss_pred EEEEecCCccccCcCC-------------------------CCCCCcccccCCcchHHHHHHHHHHCCCCEEEEEeccC
Q 018327 3 ALILVGGFGTRLRPLT-------------------------LSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQ 56 (358)
Q Consensus 3 avIla~G~g~rl~~~t-------------------------~~~pK~llpi~g~pli~~~l~~l~~~gi~~i~vv~~~~ 56 (358)
-|++|.|++.||..+. +.....+-+=.|+.=|.-.++|+...|+.++-++...-
T Consensus 32 tiliA~Gf~rrmdh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~eftms~g~~sL~~V~dwl~~~g~~~~GLIAaSL 110 (294)
T PF02273_consen 32 TILIAPGFARRMDHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDINEFTMSIGKASLLTVIDWLATRGIRRIGLIAASL 110 (294)
T ss_dssp EEEEE-TT-GGGGGGHHHHHHHHTTT--EEEE---B-------------HHHHHHHHHHHHHHHHHTT---EEEEEETT
T ss_pred eEEEecchhHHHHHHHHHHHHHhhCCeEEEeccccccccCCCCChhhcchHHhHHHHHHHHHHHHhcCCCcchhhhhhh
Confidence 5899999999996531 01111111112344455666666666666666666553
No 393
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.63 E-value=4.1e+02 Score=21.40 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=49.1
Q ss_pred HHHHHHHHHHCC-CCEEEEEec-cChHHHHHHHHhhhhccCcEEEEeccCCcCCCch--HHHHHHhhccCCCCCcEEEEe
Q 018327 34 ILHQIEALKAVG-VTEVVLAIN-YQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAG--PLALARDKLIDDTGEPFFVLN 109 (358)
Q Consensus 34 i~~~l~~l~~~g-i~~i~vv~~-~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~--sl~~~~~~i~~~~~~~~lv~~ 109 (358)
++..++.+...| +..-.+..+ +..+.+++.+.+ .|.+..+. .|..+ =...+.+.+....-+.|++++
T Consensus 43 ~~~i~~~ls~~G~i~~~R~Y~~a~a~~~l~~~l~~----~Gf~pv~~-----kG~~Dv~laIDame~~~~~~iD~~vLvS 113 (160)
T TIGR00288 43 LDEIREILSEYGDIKIGKVLLNQYASDKLIEAVVN----QGFEPIIV-----AGDVDVRMAVEAMELIYNPNIDAVALVT 113 (160)
T ss_pred HHHHHHHHHhcCCeEEEEEEechhccHHHHHHHHH----CCceEEEe-----cCcccHHHHHHHHHHhccCCCCEEEEEe
Confidence 567788888887 333333334 233444444443 35543321 23222 122233333112224899999
Q ss_pred CCeeeccCHHHHHHHHHhcCCeeEEE
Q 018327 110 SDVISEYPFAEMIEFHKAHGGEASIM 135 (358)
Q Consensus 110 gD~i~~~~l~~~~~~~~~~~~~~~~~ 135 (358)
||. |+..+++..++.+....++
T Consensus 114 gD~----DF~~Lv~~lre~G~~V~v~ 135 (160)
T TIGR00288 114 RDA----DFLPVINKAKENGKETIVI 135 (160)
T ss_pred ccH----hHHHHHHHHHHCCCEEEEE
Confidence 998 7889999988877655544
No 394
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=22.61 E-value=5e+02 Score=24.02 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=55.4
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccChHHH---HHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEE
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVM---LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFF 106 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~~~i---~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~l 106 (358)
|+-.+..+-..+...|.+.+.+|+......+ +..... ..+.++++..-+...+.-+..+++++.++.+...-|.|+
T Consensus 54 G~gv~~Evg~dikn~gaKk~llvTDkni~~~~~~~~a~~~-L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~v 132 (465)
T KOG3857|consen 54 GKGVLAEVGDDIKNLGAKKTLLVTDKNIAKLGLVKVAQDS-LEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFV 132 (465)
T ss_pred cchhHHHHHHHHHhcCccceEEeeCCChhhcccHHHHHHH-HHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEE
Confidence 6778888889999999999999999764332 111111 123366666555555556778899999988765554666
Q ss_pred EEeCCe
Q 018327 107 VLNSDV 112 (358)
Q Consensus 107 v~~gD~ 112 (358)
-+-|-.
T Consensus 133 aiGGGS 138 (465)
T KOG3857|consen 133 AIGGGS 138 (465)
T ss_pred EEcCcc
Confidence 665554
No 395
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=22.43 E-value=4.6e+02 Score=26.88 Aligned_cols=101 Identities=8% Similarity=0.041 Sum_probs=60.3
Q ss_pred ccccCCcc-hHHHHHHHHH-HCC--CCEEEEEeccChHHHHHHHHhhhhcc-CcEEEEeccCCcCCCchHHHHHHhhccC
Q 018327 25 LVEFANKP-MILHQIEALK-AVG--VTEVVLAINYQPEVMLNFLKEFEAKL-GIKIICSQETEPLGTAGPLALARDKLID 99 (358)
Q Consensus 25 llpi~g~p-li~~~l~~l~-~~g--i~~i~vv~~~~~~~i~~~l~~~~~~~-~~~i~~~~~~~~~g~~~sl~~~~~~i~~ 99 (358)
|+|.-|-. +|..+++++. +.. --+|++++..+..+....++++...+ .+.+..++...+.|.+.++-.+...+.+
T Consensus 76 lVPa~nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~ALN~~l~~~~~ 155 (703)
T PRK15489 76 MVPAWKEYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADCLNWIIQAIFR 155 (703)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 45555555 9999999864 434 23444444233345555566544333 3555556667778889999888876521
Q ss_pred C----CC--CcEEEEeCCeeeccC-HHHHHHHHH
Q 018327 100 D----TG--EPFFVLNSDVISEYP-FAEMIEFHK 126 (358)
Q Consensus 100 ~----~~--~~~lv~~gD~i~~~~-l~~~~~~~~ 126 (358)
. .. +-+++..+|.+.+.+ ++ .++.+.
T Consensus 156 ~e~~~~~~fa~vvi~DAEd~~~P~~L~-~~~~~~ 188 (703)
T PRK15489 156 YEAGHGIEFAGVILHDSEDVLHPLELK-YFNYLL 188 (703)
T ss_pred hhhhccCccceEEEEcCCCCCChhHHH-HHHhhc
Confidence 1 11 126888999988777 54 345444
No 396
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=22.39 E-value=1.3e+02 Score=28.36 Aligned_cols=10 Identities=40% Similarity=0.484 Sum_probs=5.8
Q ss_pred cEEEEeCCee
Q 018327 104 PFFVLNSDVI 113 (358)
Q Consensus 104 ~~lv~~gD~i 113 (358)
.++|.+.|.+
T Consensus 240 ylFVSNiDNL 249 (498)
T KOG2638|consen 240 YLFVSNIDNL 249 (498)
T ss_pred EEEEeccccc
Confidence 5556666654
No 397
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=22.23 E-value=4.1e+02 Score=21.23 Aligned_cols=88 Identities=15% Similarity=0.045 Sum_probs=46.4
Q ss_pred HHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCCcEEEEeCCeee
Q 018327 35 LHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS 114 (358)
Q Consensus 35 ~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~ 114 (358)
++.++.|.+.|+++++-+.+...-.+.+.+.+ ..++++...... ..+.....+...... ...-+++..|--.+
T Consensus 4 ~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~---~~~i~~v~~rhE---~~A~~mA~gyar~tg-~~~v~~~t~GpG~~ 76 (164)
T cd07039 4 DVIVETLENWGVKRVYGIPGDSINGLMDALRR---EGKIEFIQVRHE---EAAAFAASAEAKLTG-KLGVCLGSSGPGAI 76 (164)
T ss_pred HHHHHHHHHCCCCEEEEcCCCchHHHHHHHhh---cCCCeEEEeCCH---HHHHHHHHHHHHHhC-CCEEEEECCCCcHH
Confidence 67889999999999999999866555555532 224555433222 112222223333321 11123333444444
Q ss_pred ccCHHHHHHHHHhcCC
Q 018327 115 EYPFAEMIEFHKAHGG 130 (358)
Q Consensus 115 ~~~l~~~~~~~~~~~~ 130 (358)
+ -+..+.+.+.++-+
T Consensus 77 n-~~~~l~~A~~~~~P 91 (164)
T cd07039 77 H-LLNGLYDAKRDRAP 91 (164)
T ss_pred H-HHHHHHHHHhcCCC
Confidence 3 24566666665443
No 398
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=21.83 E-value=1.4e+02 Score=20.84 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=30.3
Q ss_pred HHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEec
Q 018327 36 HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ 79 (358)
Q Consensus 36 ~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 79 (358)
.++..+. .|--..+++..+-.+.+.+.+..+++..++++.+..
T Consensus 18 ~v~kai~-~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 18 QTVKALK-RGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred HHHHHHH-cCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 3455554 466666777777667899999888888888886654
No 399
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=21.31 E-value=6.7e+02 Score=23.52 Aligned_cols=76 Identities=8% Similarity=-0.065 Sum_probs=45.7
Q ss_pred CcchHHHHHHHHHHCCCCEEEEEeccCh------HHHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccCCCCC
Q 018327 30 NKPMILHQIEALKAVGVTEVVLAINYQP------EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGE 103 (358)
Q Consensus 30 g~pli~~~l~~l~~~gi~~i~vv~~~~~------~~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~~~~~ 103 (358)
|+--+...-+.+.+.|.+++.|+++... +++.+.|++ .++.+.......+.-+.+.+..+.+..++...
T Consensus 33 G~g~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~----~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~- 107 (395)
T PRK15454 33 GPGAVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAV----KGIAMTLWPCPVGEPCITDVCAAVAQLRESGC- 107 (395)
T ss_pred CcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHH----cCCeEEEECCCCCCcCHHHHHHHHHHHHhcCc-
Confidence 6777788878888889999998887532 334444433 35555433333333445567777766655444
Q ss_pred cEEEEeC
Q 018327 104 PFFVLNS 110 (358)
Q Consensus 104 ~~lv~~g 110 (358)
+++|--|
T Consensus 108 D~IiavG 114 (395)
T PRK15454 108 DGVIAFG 114 (395)
T ss_pred CEEEEeC
Confidence 5555544
No 400
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=20.85 E-value=1.3e+02 Score=21.42 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHHCCCCEEEEEec
Q 018327 31 KPMILHQIEALKAVGVTEVVLAIN 54 (358)
Q Consensus 31 ~pli~~~l~~l~~~gi~~i~vv~~ 54 (358)
.|.++..++.+...|+++++++--
T Consensus 44 ~P~i~~~l~~l~~~g~~~vvvvPl 67 (101)
T cd03409 44 GPDTEEAIRELAEEGYQRVVIVPL 67 (101)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEeC
Confidence 799999999999999999887644
No 401
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=20.78 E-value=2.3e+02 Score=25.16 Aligned_cols=94 Identities=17% Similarity=0.293 Sum_probs=48.8
Q ss_pred ccccCCcchHHHHHHHHHHC--CCCEEEEEeccChH---HHHHHHHhhhhccCcEEEEeccCCcCCCchHHHHHHhhccC
Q 018327 25 LVEFANKPMILHQIEALKAV--GVTEVVLAINYQPE---VMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLID 99 (358)
Q Consensus 25 llpi~g~pli~~~l~~l~~~--gi~~i~vv~~~~~~---~i~~~l~~~~~~~~~~i~~~~~~~~~g~~~sl~~~~~~i~~ 99 (358)
+-=+...+.+...++.+.+. ..+++.++.+.... ...+.+++..+..++++...... +...+..+.+.+..
T Consensus 108 vTGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~----~~~~~~~~~~~l~~ 183 (294)
T PF04392_consen 108 VTGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVP----SSEDLEQALEALAE 183 (294)
T ss_dssp EEEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEES----SGGGHHHHHHHHCT
T ss_pred EEEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecC----cHhHHHHHHHHhhc
Confidence 33445677889999988776 37899787776532 34445555556678776543322 22334455555533
Q ss_pred CCCCcEEEEeCCeeeccCHHHHHHH
Q 018327 100 DTGEPFFVLNSDVISEYPFAEMIEF 124 (358)
Q Consensus 100 ~~~~~~lv~~gD~i~~~~l~~~~~~ 124 (358)
.. +.+++..|.........++..
T Consensus 184 ~~--da~~~~~~~~~~~~~~~i~~~ 206 (294)
T PF04392_consen 184 KV--DALYLLPDNLVDSNFEAILQL 206 (294)
T ss_dssp T---SEEEE-S-HHHHHTHHHHHHH
T ss_pred cC--CEEEEECCcchHhHHHHHHHH
Confidence 22 667777777554445555543
No 402
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=20.78 E-value=5.7e+02 Score=22.70 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=23.2
Q ss_pred CcchH-HHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhh
Q 018327 30 NKPMI-LHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE 68 (358)
Q Consensus 30 g~pli-~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~ 68 (358)
||+.| ...+-+-...++.-|++.++...+++.++++++.
T Consensus 81 GKt~L~l~~i~~~~~~~v~~V~~~iGer~~ev~e~~~~~~ 120 (274)
T cd01132 81 GKTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLE 120 (274)
T ss_pred CccHHHHHHHHHhcCCCeEEEEEecccchHHHHHHHHHHH
Confidence 67754 2233222233444566777788888888888754
No 403
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=20.53 E-value=5.7e+02 Score=22.21 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=37.6
Q ss_pred cccccCCcc----hHHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEe
Q 018327 24 PLVEFANKP----MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICS 78 (358)
Q Consensus 24 ~llpi~g~p----li~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~ 78 (358)
|+-|+-+.. .|...|+.....|++++++......+.+.+.|+.+.+...+++...
T Consensus 6 Cv~pl~~~~~~~~~l~e~ie~~~~~G~~~~~~Y~~~~~~~~~~vL~~Y~~~g~v~~~~w 64 (285)
T PF01697_consen 6 CVSPLFGNEDDWLQLIEWIEYHRLLGVDHFYFYDNSSSPSVRKVLKEYERSGYVEVIPW 64 (285)
T ss_pred EccchhcccccHHHHHHHHHHHHHhCCCEEEEEEccCCHHHHHhHHHHhhcCeEEEEEc
Confidence 555665422 5666667777779999999999877888888887654433555443
No 404
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=20.52 E-value=1.4e+02 Score=21.06 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=34.3
Q ss_pred HHHHHHHHHHCCCCEEEEEeccChHHHHHHHHhhhhccCcEEEEeccCCcCCC
Q 018327 34 ILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGT 86 (358)
Q Consensus 34 i~~~l~~l~~~gi~~i~vv~~~~~~~i~~~l~~~~~~~~~~i~~~~~~~~~g~ 86 (358)
+..+++.+.+...+.+++-.+-. +.+.+++..++...++++.|++.....|.
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~-~~vv~~l~~lceek~Ip~v~V~s~~~LGk 69 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVE-VYLMTRVLSQINQKNIPVSFFKSKHALGK 69 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEECCHHHHHH
Confidence 34566777664455444444434 66788999888888999988876554443
No 405
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=20.22 E-value=1.9e+02 Score=26.48 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=23.2
Q ss_pred cccccCCcchHHHHHHHHHHCCCCEEEEEe
Q 018327 24 PLVEFANKPMILHQIEALKAVGVTEVVLAI 53 (358)
Q Consensus 24 ~llpi~g~pli~~~l~~l~~~gi~~i~vv~ 53 (358)
++|.+. .|-|...++.|.+.|.++++|+=
T Consensus 43 aFLE~~-ePsl~eal~~l~~~G~~~IvVvP 71 (335)
T PRK05782 43 TYNEFA-EPNWRSLLNEIIKEGYRRVIIAL 71 (335)
T ss_pred EEeccC-CCCHHHHHHHHHHCCCCEEEEec
Confidence 455554 59999999999999999987654
No 406
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=20.06 E-value=4.9e+02 Score=21.25 Aligned_cols=45 Identities=29% Similarity=0.346 Sum_probs=30.5
Q ss_pred CCCchHHHHHHhhccCCCCCcEEEEeCCeeeccCHHHHHHHHHhc
Q 018327 84 LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAH 128 (358)
Q Consensus 84 ~g~~~sl~~~~~~i~~~~~~~~lv~~gD~i~~~~l~~~~~~~~~~ 128 (358)
.|-.-|=+.+.+.+-+.+.++.+|+--|.....++.+.++...+.
T Consensus 68 iGC~lSH~~~w~~~v~~~~~~~lIlEDDv~~~~~f~~~l~~~~~~ 112 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVDSGLEYALILEDDVIFDPDFKEFLEEILSH 112 (200)
T ss_pred EeehhhHHHHHHHHHHcCCCeEEEEeccccccccHHHHHHHHHhh
Confidence 444445455544443344358999999999988888888876655
Done!