BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018328
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 310 QSRRYDNRPEVRRQSYIEMQIFRNRWKHAVEDDKCWVDPYGQ 351
+ RY ++PEV R + + ++ R R KH V DK V G+
Sbjct: 153 NTERY-SKPEVERVARVAFEVARKRRKHVVSVDKANVLEVGE 193
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 310 QSRRYDNRPEVRRQSYIEMQIFRNRWKHAVEDDKCWVDPYGQ 351
+ RY ++PEV R + + ++ R R KH V DK V G+
Sbjct: 153 NTERY-SKPEVERVARVAFELARKRRKHVVSVDKANVLEVGE 193
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 310 QSRRYDNRPEVRRQSYIEMQIFRNRWKHAVEDDKCWVDPYGQ 351
+ RY ++PEV R + + ++ R R KH V DK V G+
Sbjct: 153 NTERY-SKPEVERVARVAFELARKRRKHVVSVDKANVLEVGE 193
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 310 QSRRYDNRPEVRRQSYIEMQIFRNRWKHAVEDDKCWVDPYGQ 351
+ RY ++PEV R + + ++ R R KH V DK V G+
Sbjct: 153 NTERY-SKPEVERVARVAFELARKRRKHVVSVDKANVLEVGE 193
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 310 QSRRYDNRPEVRRQSYIEMQIFRNRWKHAVEDDKCWVDPYGQ 351
+ RY ++PEV R + + ++ R R KH V DK V G+
Sbjct: 153 NTERY-SKPEVERVARVAFELARKRRKHVVSVDKANVLEVGE 193
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 216 GWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 275
GWVE+ P + R I+ D G +I +GD+T +VD + G
Sbjct: 105 GWVELNLPNGEKKKVRIRRLHIEED----AGKNIH-----EGDKT----LVD---LNRAG 148
Query: 276 LPTLGVTTEPELNTVGQASDDLEQIAN 302
P + + TEP++ T +A LE++ N
Sbjct: 149 TPLMEIVTEPDIRTPEEARLFLEKLRN 175
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
pdb|2IBP|B Chain B, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
Length = 409
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 59 PMNLLAIAAGIKQKKIVD---QIVRKFPSKDF-VVMLFHYDGVVDEWKDLVWADRAIHVS 114
P NL AIA+ I+Q+ + Q + +P+ DF + F+Y G+ E+ ++A +
Sbjct: 316 PQNLFAIASAIEQEVLSHPYFQQRKLYPNVDFWSGIAFYYMGIPYEYFTPIFAMSRVVGW 375
Query: 115 AANQTKWWFAKRFLHP 130
A+ ++W R P
Sbjct: 376 VAHVLEYWENNRIFRP 391
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
Length = 350
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 11 SAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIK 70
+ K + LP EA+ EG + N+EM P W++ N R P ++ + G+
Sbjct: 56 TGKSTAVRALAALLPEIEAV-EGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVS 114
Query: 71 QKKIVDQI 78
+ ++V +
Sbjct: 115 EDRVVGAL 122
>pdb|2ERS|A Chain A, Solution Structure Of The Interleukin-15 Receptor Sushi
Domain
Length = 66
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 3 WGLVHSMYSAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPS 51
W +S+YS + C + R GT +L E +++K +N+ W++PS
Sbjct: 15 WVKSYSLYSRERYICNSGFKRKAGTSSLTECVLNKATNVAH---WTTPS 60
>pdb|4GS7|D Chain D, Structure Of The Interleukin-15 Quaternary Complex
Length = 69
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 3 WGLVHSMYSAKPETCKNQQCRLPGTEALPEGIVSKTSNLEMRPLWSSPS 51
W +S+YS + C + R GT +L E +++K +N+ W++PS
Sbjct: 17 WVKSYSLYSRERYICNSGFKRKAGTSSLTECVLNKATNVAH---WTTPS 62
>pdb|1EJ6|A Chain A, Reovirus Core
pdb|2CSE|U Chain U, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1289
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 52 KLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDL 104
K++ PP ++ + + IVD + R FPS D+ + D VVD DL
Sbjct: 537 KISGVPPPSSVRQFGYDVARGAIVD-LARPFPSGDYQFVYSDVDQVVDGHDDL 588
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,664,862
Number of Sequences: 62578
Number of extensions: 489139
Number of successful extensions: 967
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 962
Number of HSP's gapped (non-prelim): 14
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)