Query 018328
Match_columns 358
No_of_seqs 136 out of 160
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 08:04:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 1E-131 3E-136 944.6 26.2 290 21-341 4-293 (294)
2 cd04185 GT_2_like_b Subfamily 94.9 0.098 2.1E-06 45.2 6.9 101 134-279 78-178 (202)
3 cd04186 GT_2_like_c Subfamily 94.3 0.11 2.3E-06 42.3 5.7 92 135-275 74-166 (166)
4 TIGR01556 rhamnosyltran L-rham 93.9 0.22 4.7E-06 46.1 7.4 128 134-275 72-202 (281)
5 cd02510 pp-GalNAc-T pp-GalNAc- 90.8 3.6 7.8E-05 38.6 11.3 139 134-276 82-227 (299)
6 cd02526 GT2_RfbF_like RfbF is 90.3 0.6 1.3E-05 41.1 5.4 127 135-275 75-205 (237)
7 cd02520 Glucosylceramide_synth 89.0 0.5 1.1E-05 41.3 3.9 93 134-275 85-177 (196)
8 cd02525 Succinoglycan_BP_ExoA 88.9 1.5 3.3E-05 38.4 6.8 128 134-276 80-210 (249)
9 PF13641 Glyco_tranf_2_3: Glyc 87.5 0.83 1.8E-05 40.1 4.3 128 134-278 85-214 (228)
10 cd06421 CESA_CelA_like CESA_Ce 85.9 0.61 1.3E-05 40.7 2.6 129 134-279 83-216 (234)
11 cd04195 GT2_AmsE_like GT2_AmsE 81.6 1.1 2.4E-05 38.4 2.4 119 133-272 78-199 (201)
12 cd06442 DPM1_like DPM1_like re 80.8 2 4.2E-05 37.4 3.7 36 134-169 77-112 (224)
13 COG1216 Predicted glycosyltran 77.8 11 0.00024 36.0 8.0 138 136-280 85-226 (305)
14 cd06437 CESA_CaSu_A2 Cellulose 77.6 2.4 5.3E-05 37.7 3.4 132 134-279 86-218 (232)
15 PLN02726 dolichyl-phosphate be 76.8 4.5 9.7E-05 36.7 4.9 38 134-171 92-129 (243)
16 cd06433 GT_2_WfgS_like WfgS an 76.1 4.8 0.0001 33.6 4.6 37 134-170 74-111 (202)
17 PF01762 Galactosyl_T: Galacto 66.6 20 0.00043 32.0 6.6 176 43-256 6-185 (195)
18 PF13506 Glyco_transf_21: Glyc 66.0 4.5 9.7E-05 36.2 2.3 125 134-277 30-156 (175)
19 cd04188 DPG_synthase DPG_synth 65.2 4.5 9.8E-05 35.4 2.1 37 134-170 81-117 (211)
20 cd06434 GT2_HAS Hyaluronan syn 65.0 3.6 7.8E-05 36.2 1.5 41 134-174 76-116 (235)
21 PF00535 Glycos_transf_2: Glyc 63.4 5.5 0.00012 31.8 2.2 38 134-171 77-114 (169)
22 cd02522 GT_2_like_a GT_2_like_ 62.5 22 0.00047 30.8 5.9 41 134-174 71-111 (221)
23 cd06913 beta3GnTL1_like Beta 1 62.3 17 0.00036 32.1 5.2 124 133-275 82-210 (219)
24 cd06439 CESA_like_1 CESA_like_ 61.4 6.1 0.00013 35.3 2.3 40 134-173 108-147 (251)
25 cd04187 DPM1_like_bac Bacteria 56.8 12 0.00026 31.7 3.2 34 134-168 79-112 (181)
26 cd06435 CESA_NdvC_like NdvC_li 54.9 7.3 0.00016 34.5 1.6 123 135-271 84-206 (236)
27 PTZ00260 dolichyl-phosphate be 54.7 22 0.00048 35.0 5.1 192 58-269 69-287 (333)
28 PF13632 Glyco_trans_2_3: Glyc 53.8 15 0.00032 31.8 3.3 125 138-278 1-128 (193)
29 PF02434 Fringe: Fringe-like; 50.0 16 0.00034 34.9 3.2 192 62-283 10-216 (252)
30 PF12621 DUF3779: Phosphate me 49.0 15 0.00033 30.4 2.5 52 125-181 34-87 (95)
31 PRK11204 N-glycosyltransferase 44.9 35 0.00075 33.7 4.8 201 58-280 53-266 (420)
32 cd00761 Glyco_tranf_GTA_type G 41.1 24 0.00051 27.2 2.4 36 135-170 77-113 (156)
33 cd06423 CESA_like CESA_like is 39.4 19 0.00041 28.5 1.6 38 135-172 78-116 (180)
34 cd04184 GT2_RfbC_Mx_like Myxoc 38.3 26 0.00056 29.9 2.4 37 134-170 82-119 (202)
35 PF09258 Glyco_transf_64: Glyc 36.4 50 0.0011 31.6 4.2 95 68-163 8-103 (247)
36 cd04192 GT_2_like_e Subfamily 36.1 28 0.00061 30.0 2.3 38 134-171 81-118 (229)
37 PF10111 Glyco_tranf_2_2: Glyc 34.5 69 0.0015 30.4 4.8 95 63-158 2-111 (281)
38 cd04196 GT_2_like_d Subfamily 33.3 33 0.00073 29.2 2.3 47 224-275 158-204 (214)
39 PF12996 DUF3880: DUF based on 32.5 22 0.00048 28.1 1.0 25 130-164 13-37 (79)
40 cd00505 Glyco_transf_8 Members 31.9 96 0.0021 28.7 5.2 89 59-159 30-118 (246)
41 PF09828 Chrome_Resist: Chroma 31.5 31 0.00066 31.1 1.8 55 121-182 15-87 (135)
42 cd06427 CESA_like_2 CESA_like_ 31.1 46 0.00099 30.0 2.9 38 134-171 83-122 (241)
43 PF07976 Phe_hydrox_dim: Pheno 29.7 49 0.0011 29.8 2.8 72 28-108 34-125 (169)
44 TIGR03469 HonB hopene-associat 29.5 51 0.0011 32.7 3.2 33 136-168 134-166 (384)
45 TIGR02165 cas_GSU0054 CRISPR-a 28.2 10 0.00023 39.0 -1.9 33 209-253 75-107 (465)
46 cd06420 GT2_Chondriotin_Pol_N 27.8 42 0.0009 28.1 1.9 26 134-159 78-103 (182)
47 PLN02867 Probable galacturonos 27.2 29 0.00063 37.5 1.1 34 125-159 334-367 (535)
48 PF14538 Raptor_N: Raptor N-te 25.1 38 0.00082 30.6 1.3 11 87-97 90-100 (154)
49 KOG1555 26S proteasome regulat 24.6 39 0.00084 34.3 1.4 41 205-245 80-120 (316)
50 cd06430 GT8_like_2 GT8_like_2 23.1 2.6E+02 0.0055 28.2 6.7 102 61-164 2-124 (304)
51 KOG0163 Myosin class VI heavy 22.6 38 0.00082 38.6 0.9 66 32-97 607-682 (1259)
52 KOG0747 Putative NAD+-dependen 22.3 1E+02 0.0022 31.6 3.7 75 59-133 7-82 (331)
53 KOG2264 Exostosin EXT1L [Signa 22.3 1E+02 0.0023 34.2 4.0 97 67-164 631-753 (907)
54 PRK13863 type IV secretion sys 21.0 1.8E+02 0.0039 31.0 5.3 83 60-168 84-179 (446)
55 cd02515 Glyco_transf_6 Glycosy 20.7 3.5E+02 0.0076 27.1 7.0 95 58-156 34-145 (271)
56 KOG2547 Ceramide glucosyltrans 20.6 1.6E+02 0.0035 31.1 4.9 120 127-266 161-289 (431)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=1.2e-131 Score=944.61 Aligned_cols=290 Identities=64% Similarity=1.171 Sum_probs=279.3
Q ss_pred cCCCCCCCCCCCCccccCCCcceecCCCCCCCCCCCCCCCcEEEEEeccccccchhHHHhcCCCCCcEEEEEEecCccCc
Q 018328 21 QCRLPGTEALPEGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDE 100 (358)
Q Consensus 21 q~~~~~~e~Lp~giv~~~sd~~lr~Lwg~~~~~~~~~~~k~Lla~~VG~kqk~~Vd~~v~kf~~~nF~vmLfhYDg~vd~ 100 (358)
+|+|+|+|+||+|||+++|||+||||||.|+++. +.++|||||||||+|||++||++|+|| ++|||||||||||+||+
T Consensus 4 ~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~-~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~vd~ 81 (294)
T PF05212_consen 4 PCNPRGAERLPPGIVVRESDLELRPLWGNPSEDL-PKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGRVDE 81 (294)
T ss_pred CCCCCccccCCCCccccCCCceeeecCCCccccc-cCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCCcCc
Confidence 8999999999999999999999999999999885 568899999999999999999999999 89999999999999999
Q ss_pred cccccccCceeEEEeecccchhhhccccChhhhccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCccc
Q 018328 101 WKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVH 180 (358)
Q Consensus 101 W~d~ews~~aiHv~a~kqtKwwfakRfLHPdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~ 180 (358)
|++||||++||||++.|||||||||||||||||++|||||||||||+||+|+|+|||+||++||||||||||++++|++|
T Consensus 82 w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~ 161 (294)
T PF05212_consen 82 WDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIH 161 (294)
T ss_pred hhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred ccccccccCcccceeeecccCCCCCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCC
Q 018328 181 HPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRT 260 (358)
Q Consensus 181 h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~ 260 (358)
|+||+|++.++|||. .++.+.|.+++++||||||||||||||||+|||||||||||||+|||||||+|+||+ ++++
T Consensus 162 ~~iT~R~~~~~vhr~---~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~-~~~~ 237 (294)
T PF05212_consen 162 HPITKRRPDSEVHRK---TRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCA-GDRH 237 (294)
T ss_pred eeEEeecCCceeEec---cCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHh-cccc
Confidence 999999999999993 577888889999999999999999999999999999999999999999999999999 6899
Q ss_pred CcEEEEeeeeEEeccCCCCCCCCCcccccccCCCchhhhhccccccCCCCCCCCCChHHHHhhhHHHHHHHHHHHHHhHh
Q 018328 261 KNVGVVDSEYIVHLGLPTLGVTTEPELNTVGQASDDLEQIANPVALAPSQSRRYDNRPEVRRQSYIEMQIFRNRWKHAVE 340 (358)
Q Consensus 261 ~kiGVVDa~~VvH~~iptLg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~r~~~E~~~f~~Rw~~A~~ 340 (358)
+||||||||||+|+++|||||++.++. +.++|.+||+||++||++|++||++|++
T Consensus 238 ~kiGVVDs~~VvH~gvptLG~~~~~~~-------------------------~~~~~~~Vr~r~~~E~~~F~~R~~~a~~ 292 (294)
T PF05212_consen 238 KKIGVVDSQYVVHTGVPTLGGQGNSEK-------------------------GKDPREEVRRRSFAEMRIFQKRWANAVK 292 (294)
T ss_pred ccEEEEeeEEEEEcCCCcCCCcccccc-------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999886642 4578999999999999999999999998
Q ss_pred c
Q 018328 341 D 341 (358)
Q Consensus 341 ~ 341 (358)
+
T Consensus 293 ~ 293 (294)
T PF05212_consen 293 E 293 (294)
T ss_pred c
Confidence 6
No 2
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.87 E-value=0.098 Score=45.20 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=67.9
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 213 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~pp 213 (358)
+.+|||++.|+|..++..-+.++++.+++.++.+..|..-...+ +
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-----------------------------------~ 122 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-----------------------------------S 122 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-----------------------------------c
Confidence 57999999999999998888888887764455444443221110 1
Q ss_pred ccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCCC
Q 018328 214 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTL 279 (358)
Q Consensus 214 cTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~iptL 279 (358)
+.++ +++|++|+.+ . .+.+.-..||=|.-+..-+. ..+.++ .+.+..++|....+.
T Consensus 123 ~~~~------~~~~~~~~~~-g-~~~~~~~~~~eD~~~~~r~~-~~G~~i-~~~~~~~~h~~~~~~ 178 (202)
T cd04185 123 FVGV------LISRRVVEKI-G-LPDKEFFIWGDDTEYTLRAS-KAGPGI-YVPDAVVVHKTAINK 178 (202)
T ss_pred eEEE------EEeHHHHHHh-C-CCChhhhccchHHHHHHHHH-HcCCcE-EecceEEEEcccccc
Confidence 1122 4889999877 3 34454567888887765443 235789 999999999985443
No 3
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.34 E-value=0.11 Score=42.34 Aligned_cols=92 Identities=20% Similarity=0.150 Sum_probs=61.5
Q ss_pred cccEEEEecccccCCCCCHHHHHHHHHHh-CCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCCC
Q 018328 135 EYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 213 (358)
Q Consensus 135 ~YdYIflwDdDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~pp 213 (358)
.+|||++.|+|..++...+.++.+.+.+. +..+..+.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 111 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------------ 111 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------------
Confidence 79999999999999887777777754432 22222222
Q ss_pred ccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEecc
Q 018328 214 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 275 (358)
Q Consensus 214 cTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~ 275 (358)
+=.-+.+|++++++.+ . .+++.-..+|-|..+...+. ..+.+|..+....+.|.+
T Consensus 112 ----~~~~~~~~~~~~~~~~-~-~~~~~~~~~~eD~~~~~~~~-~~g~~i~~~~~~~~~h~~ 166 (166)
T cd04186 112 ----VSGAFLLVRREVFEEV-G-GFDEDFFLYYEDVDLCLRAR-LAGYRVLYVPQAVIYHHG 166 (166)
T ss_pred ----CceeeEeeeHHHHHHc-C-CCChhhhccccHHHHHHHHH-HcCCeEEEccceEEEecC
Confidence 0012558899999876 2 23443334777887765443 235799999999999964
No 4
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=93.87 E-value=0.22 Score=46.09 Aligned_cols=128 Identities=15% Similarity=0.065 Sum_probs=73.4
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHh--CCcccCCCC-CCCCCcccccccccccCcccceeeecccCCCCCCCCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE--GLEISQPAL-DPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 210 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~--gLeISQPAL-d~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~ 210 (358)
+.+|||++.|+|..++.-.+.++++.+++. +.-+..|.+ +.+.. ...+...... ... +.. ... ..+
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~-~~~-------~~~-~~~ 140 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTS-RRLPAIHLDG-LLL-RQI-------SLD-GLT 140 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCc-ccCCceeecc-cce-eee-------ccc-ccC
Confidence 379999999999999998999999988876 567777764 33221 1122111111 000 000 000 001
Q ss_pred CCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEecc
Q 018328 211 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 275 (358)
Q Consensus 211 ~ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~ 275 (358)
.+.-+.++=.-..+++|++++.+ .+ +++..-.++.|.-|..-+. ..+.+|.++....+.|..
T Consensus 141 ~~~~~~~~~~sg~li~~~~~~~i-G~-fde~~fi~~~D~e~~~R~~-~~G~~i~~~~~~~~~H~~ 202 (281)
T TIGR01556 141 TPQKTSFLISSGCLITREVYQRL-GM-MDEELFIDHVDTEWSLRAQ-NYGIPLYIDPDIVLEHRI 202 (281)
T ss_pred CceeccEEEcCcceeeHHHHHHh-CC-ccHhhcccchHHHHHHHHH-HCCCEEEEeCCEEEEEec
Confidence 11111111001236899999988 44 3443334667877754333 235689999999999974
No 5
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=90.75 E-value=3.6 Score=38.63 Aligned_cols=139 Identities=14% Similarity=0.084 Sum_probs=76.6
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCC-ccccccccc-ccC---cccceeeecccCCCCCCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKS-EVHHPITAR-RRN---SKAHRRMYKYKGSGRCDDY 208 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~-~i~h~iT~R-~~~---~~vHr~~~~~~~~~~C~~~ 208 (358)
+..|||++.|.|..++..-++++++.+.+..-.+.-|.+..-.+ .+.+.-... ... ..++...........+...
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 67999999999999999999999999998877777787653221 122221111 000 0001000000000000111
Q ss_pred CCCCCccceEEeecccccHHHHHHHhhhhcCCCcccch-hhhhhh-hhhcCCCCCcEEEEeeeeEEeccC
Q 018328 209 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWG-LDIQLG-YCAQGDRTKNVGVVDSEYIVHLGL 276 (358)
Q Consensus 209 ~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWG-LD~~w~-~c~qg~~~~kiGVVDa~~VvH~~i 276 (358)
+..|..+.++-..+=+|+|++|..+ .. +......|| =|.-+. ++.+ .+.+|-++-...|.|...
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~v-Gg-fDe~~~~~~~ED~Dl~~R~~~--~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLEL-GG-YDEGMDIWGGENLELSFKVWQ--CGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHh-CC-CCCcccccCchhHHHHHHHHH--cCCeEEEeeccEEEEecc
Confidence 1122223333333446889999888 33 444455665 344442 2222 246899999999999864
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=90.27 E-value=0.6 Score=41.12 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=62.6
Q ss_pred cccEEEEecccccCCCCCHHHHH---HHHH-HhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCC
Q 018328 135 EYNYIFLWDEDIGVENFNPRRYL---SIVK-DEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYST 210 (358)
Q Consensus 135 ~YdYIflwDdDL~vd~f~i~ry~---~Ivr-~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~ 210 (358)
.||||++.|+|..++...+.+++ .... ...+-+..|.............. +.....+ . . .. +. ..
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~--~~----~~--~~ 143 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGV-RKSGYKL-R-I--QK----EG--EE 143 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccce-eccCccc-e-e--cc----cc--cC
Confidence 68999999999999988888885 2222 22344555543322111111110 0000000 0 0 00 00 00
Q ss_pred CCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEecc
Q 018328 211 APPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 275 (358)
Q Consensus 211 ~ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~ 275 (358)
...-..++=.-+-+|+|++++.+ ..+ .+.....|-|+.+...+. ..+.++..+....|.|..
T Consensus 144 ~~~~~~~~~~~~~~~rr~~~~~~-ggf-d~~~~~~~eD~d~~~r~~-~~G~~~~~~~~~~v~h~~ 205 (237)
T cd02526 144 GLKEVDFLITSGSLISLEALEKV-GGF-DEDLFIDYVDTEWCLRAR-SKGYKIYVVPDAVLKHEL 205 (237)
T ss_pred CceEeeeeeccceEEcHHHHHHh-CCC-CHHHcCccchHHHHHHHH-HcCCcEEEEcCeEEEecc
Confidence 00000011011125899999888 332 332223355776654443 235689999888888864
No 7
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=89.01 E-value=0.5 Score=41.29 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=54.6
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 213 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~pp 213 (358)
+.+|||++.|.|..++...+.++++.+. +|..+--.+. |
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~-------~~~~~~v~~~--------------------------~-------- 123 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLM-------DPGVGLVTCL--------------------------C-------- 123 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhh-------CCCCCeEEee--------------------------c--------
Confidence 6799999999998887766666665432 2322211110 0
Q ss_pred ccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEecc
Q 018328 214 CIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 275 (358)
Q Consensus 214 cTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~ 275 (358)
++ ..+=+|+|++++.+=. +.....-.+=|+.+...+. ..+.+|.+++.. ++|..
T Consensus 124 ~~----g~~~~~r~~~~~~~gg--f~~~~~~~~eD~~l~~rl~-~~G~~i~~~~~~-~~~~~ 177 (196)
T cd02520 124 AF----GKSMALRREVLDAIGG--FEAFADYLAEDYFLGKLIW-RLGYRVVLSPYV-VMQPL 177 (196)
T ss_pred cc----CceeeeEHHHHHhccC--hHHHhHHHHHHHHHHHHHH-HcCCeEEEcchh-eeccC
Confidence 00 1234788999987722 1222223467888876554 246789888875 44443
No 8
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=88.90 E-value=1.5 Score=38.44 Aligned_cols=128 Identities=9% Similarity=-0.027 Sum_probs=68.9
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCC-C-CC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDY-S-TA 211 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~-~-~~ 211 (358)
+.+|||.+.|+|..++...++++++..++.+..+.++...............+...+.+. ......+... . ..
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 154 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLG-----SGGSAYRGGAVKIGY 154 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhc-----cCCcccccccccccc
Confidence 479999999999999998899999888888877766554321110111000000000000 0000000000 0 00
Q ss_pred CCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhh-hhhcCCCCCcEEEEeeeeEEeccC
Q 018328 212 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLG-YCAQGDRTKNVGVVDSEYIVHLGL 276 (358)
Q Consensus 212 ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~-~c~qg~~~~kiGVVDa~~VvH~~i 276 (358)
....++ | +|+|++|+.+ .. ++.. ...|-|+.+. ++.+ .+.++..+....+.|...
T Consensus 155 ~~~~~~---~--~~~~~~~~~~-g~-~~~~-~~~~eD~~l~~r~~~--~G~~~~~~~~~~~~~~~~ 210 (249)
T cd02525 155 VDTVHH---G--AYRREVFEKV-GG-FDES-LVRNEDAELNYRLRK--AGYKIWLSPDIRVYYYPR 210 (249)
T ss_pred cccccc---c--eEEHHHHHHh-CC-CCcc-cCccchhHHHHHHHH--cCcEEEEcCCeEEEEcCC
Confidence 001111 1 5789999887 32 2222 2346777775 3443 356899999988888763
No 9
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=87.53 E-value=0.83 Score=40.11 Aligned_cols=128 Identities=17% Similarity=0.109 Sum_probs=63.5
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCc--ccceeeecccCCCCCCCCCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNS--KAHRRMYKYKGSGRCDDYSTA 211 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~--~vHr~~~~~~~~~~C~~~~~~ 211 (358)
..+|||++.|+|..++...+.++++.+...+..+.++........ ..++.-.... .-|...+ . .......
T Consensus 85 ~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~--~~~~~~~ 156 (228)
T PF13641_consen 85 ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDR--NWLTRLQDLFFARWHLRFR----S--GRRALGV 156 (228)
T ss_dssp ---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCC--CEEEE-TT--S-EETTTS-----T--T-B----
T ss_pred cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCC--CHHHHHHHHHHhhhhhhhh----h--hhcccce
Confidence 459999999999999999999999999778888888665332211 1111111000 0000000 0 0000011
Q ss_pred CCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCC
Q 018328 212 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPT 278 (358)
Q Consensus 212 ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~ipt 278 (358)
+.++| -+=+|+|++++.+-. ++. ..-|=|+.+...+. ..+.+|.......|.|...++
T Consensus 157 ~~~~G----~~~~~rr~~~~~~g~--fd~--~~~~eD~~l~~r~~-~~G~~~~~~~~~~v~~~~~~~ 214 (228)
T PF13641_consen 157 AFLSG----SGMLFRRSALEEVGG--FDP--FILGEDFDLCLRLR-AAGWRIVYAPDALVYHEEPSS 214 (228)
T ss_dssp S-B------TEEEEEHHHHHHH-S----S--SSSSHHHHHHHHHH-HTT--EEEEEEEEEEE--SSS
T ss_pred eeccC----cEEEEEHHHHHHhCC--CCC--CCcccHHHHHHHHH-HCCCcEEEECCcEEEEeCCCC
Confidence 11222 123689999988832 344 44457888864433 246789999988888886444
No 10
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=85.95 E-value=0.61 Score=40.73 Aligned_cols=129 Identities=13% Similarity=0.005 Sum_probs=72.3
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHH-hCCcccCCCCC--CCCCccccccccccc--CcccceeeecccCCCCCCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKD-EGLEISQPALD--PVKSEVHHPITARRR--NSKAHRRMYKYKGSGRCDDY 208 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~-~gLeISQPALd--~~s~~i~h~iT~R~~--~~~vHr~~~~~~~~~~C~~~ 208 (358)
+.+|||++.|+|..++.-.+.++++.+.+ .++.+.++... .... .. .+..... ...+.+.+.. +...+
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~--~~~~~--- 155 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDP-FD-WLADGAPNEQELFYGVIQP--GRDRW--- 155 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCc-ch-hHHHHHHHHHHHHHHHHHH--HHhhc---
Confidence 48999999999999999999999999987 77777776521 1111 10 0111000 0000000000 00000
Q ss_pred CCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCCC
Q 018328 209 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTL 279 (358)
Q Consensus 209 ~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~iptL 279 (358)
++ .++=.+.=+|+|++++.+-. + ++ ...+-|+.+..-+. ..+.+|..++...+.|...+++
T Consensus 156 ----~~-~~~~g~~~~~r~~~~~~ig~-~-~~--~~~~eD~~l~~r~~-~~g~~i~~~~~~~~~~~~~~~~ 216 (234)
T cd06421 156 ----GA-AFCCGSGAVVRREALDEIGG-F-PT--DSVTEDLATSLRLH-AKGWRSVYVPEPLAAGLAPETL 216 (234)
T ss_pred ----CC-ceecCceeeEeHHHHHHhCC-C-Cc--cceeccHHHHHHHH-HcCceEEEecCccccccCCccH
Confidence 11 12223455789999998833 2 22 34578988874332 2356888888877776654443
No 11
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=81.59 E-value=1.1 Score=38.43 Aligned_cols=119 Identities=12% Similarity=0.049 Sum_probs=63.5
Q ss_pred hccccEEEEecccccCCCCCHHHHHHHHHHh-CCcccCCCCCCC--CCcccccccccccCcccceeeecccCCCCCCCCC
Q 018328 133 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDE-GLEISQPALDPV--KSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYS 209 (358)
Q Consensus 133 v~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~--s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~ 209 (358)
.+.+|||++.|+|..++.-.+++.++.+.++ +..|..+....- .+...+... .+.. .+..+.. ....|.
T Consensus 78 ~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~-~~~~~~--- 149 (201)
T cd04195 78 HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR--LPTS--HDDILKF-ARRRSP--- 149 (201)
T ss_pred hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc--CCCC--HHHHHHH-hccCCC---
Confidence 3689999999999999888888888887653 566665543211 111111111 0100 0000000 001111
Q ss_pred CCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEE
Q 018328 210 TAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIV 272 (358)
Q Consensus 210 ~~ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~Vv 272 (358)
+..++=+|.|+++..+-. +... -.+-|+.+...+- ..+.++..+....+.
T Consensus 150 --------~~~~~~~~rr~~~~~~g~--~~~~--~~~eD~~~~~r~~-~~g~~~~~~~~~~~~ 199 (201)
T cd04195 150 --------FNHPTVMFRKSKVLAVGG--YQDL--PLVEDYALWARML-ANGARFANLPEILVK 199 (201)
T ss_pred --------CCChHHhhhHHHHHHcCC--cCCC--CCchHHHHHHHHH-HcCCceecccHHHhh
Confidence 111123688999988733 2333 5677888765442 235678777655443
No 12
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=80.81 E-value=2 Score=37.43 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=26.4
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQ 169 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQ 169 (358)
+..|||++.|+|..++.-.+.++++.+.+.+..+..
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 456999999999888777777777776555555443
No 13
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=77.81 E-value=11 Score=35.97 Aligned_cols=138 Identities=15% Similarity=0.038 Sum_probs=83.7
Q ss_pred ccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCC----CCC
Q 018328 136 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDY----STA 211 (358)
Q Consensus 136 YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~----~~~ 211 (358)
|+|++++++|..++...++++++.+++.+-...=+++-.+... .-.+..+.......... .....+... ..-
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 160 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDE-SLYIDRRGGESDGLTGG---WRASPLLEIAPDLSSY 160 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCC-Ccchheecccccccccc---ceecccccccccccch
Confidence 5599999999999999999999999999887777765443221 11111111111000000 000011110 111
Q ss_pred CCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCCCC
Q 018328 212 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLG 280 (358)
Q Consensus 212 ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~iptLg 280 (358)
+.+-+++..-+-+++|++++.+ .. +...-=...-|.-|.+-+. ..+.+|..+=+-.|.|..--+-+
T Consensus 161 ~~~~~~~~G~~~li~~~~~~~v-G~-~de~~F~y~eD~D~~~R~~-~~G~~i~~~p~a~i~H~~g~s~~ 226 (305)
T COG1216 161 LEVVASLSGACLLIRREAFEKV-GG-FDERFFIYYEDVDLCLRAR-KAGYKIYYVPDAIIYHKIGSSKG 226 (305)
T ss_pred hhhhhhcceeeeEEcHHHHHHh-CC-CCcccceeehHHHHHHHHH-HcCCeEEEeeccEEEEeccCCCC
Confidence 2233356776788999999988 33 4555566667777765553 23458999999999998744444
No 14
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=77.65 E-value=2.4 Score=37.67 Aligned_cols=132 Identities=15% Similarity=0.062 Sum_probs=69.7
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCccccccc-ccccCcccceeeecccCCCCCCCCCCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPIT-ARRRNSKAHRRMYKYKGSGRCDDYSTAP 212 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT-~R~~~~~vHr~~~~~~~~~~C~~~~~~p 212 (358)
+.+|||++.|.|..++...++++..++...+..+.|+-+......-++ ++ .+.-....|-. .+..+. ..+
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~-----~~~ 156 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSL-LTRVQAMSLDYHFT---IEQVAR-----SST 156 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCch-hhHhhhhhHHhhhh---HhHhhH-----hhc
Confidence 589999999999999988888887777666666666643210000000 10 00000000000 000000 000
Q ss_pred CccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCCC
Q 018328 213 PCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTL 279 (358)
Q Consensus 213 pcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~iptL 279 (358)
.+...+=.++-+|+|++|+.+-. + .+. ..+=|+.+...+. .++.++..+....|.|...+|+
T Consensus 157 ~~~~~~~g~~~~~rr~~~~~vgg-~-~~~--~~~ED~~l~~rl~-~~G~~~~~~~~~~v~~~~~~~~ 218 (232)
T cd06437 157 GLFFNFNGTAGVWRKECIEDAGG-W-NHD--TLTEDLDLSYRAQ-LKGWKFVYLDDVVVPAELPASM 218 (232)
T ss_pred CCeEEeccchhhhhHHHHHHhCC-C-CCC--cchhhHHHHHHHH-HCCCeEEEeccceeeeeCCcCH
Confidence 01111112223799999988832 2 332 2457887765443 3457899998888777765544
No 15
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=76.78 E-value=4.5 Score=36.74 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=31.3
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 171 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPA 171 (358)
+..|||++.|.|..++...++++++.+.+.+..+....
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 129 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGT 129 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEc
Confidence 57899999999999988888999988877776665443
No 16
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=76.12 E-value=4.8 Score=33.62 Aligned_cols=37 Identities=8% Similarity=-0.049 Sum_probs=27.2
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHH-HHhCCcccCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQP 170 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Iv-r~~gLeISQP 170 (358)
+..|||++.|+|..++.-.+.+.++.. ...+..+..+
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g 111 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYG 111 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEe
Confidence 468999999999999988888888444 3334554443
No 17
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=66.60 E-value=20 Score=32.02 Aligned_cols=176 Identities=18% Similarity=0.220 Sum_probs=92.4
Q ss_pred eecCCCCCCCCCCCCCCCcEEEEEecccc--ccchhHHHhcCCCCCcEEEEEEecCccCccccccccCceeEEEeecccc
Q 018328 43 MRPLWSSPSKLNNQRPPMNLLAIAAGIKQ--KKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTK 120 (358)
Q Consensus 43 lr~Lwg~~~~~~~~~~~k~Lla~~VG~kq--k~~Vd~~v~kf~~~nF~vmLfhYDg~vd~W~d~ews~~aiHv~a~kqtK 120 (358)
+|.-||++..-. ..+.-+.+=+|... ...++..|.+-....=||+++-+ +|.+..+. .+.+. ..+
T Consensus 6 IR~TW~~~~~~~---~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt--~K~~~-----~~~ 72 (195)
T PF01762_consen 6 IRETWGNQRNFK---GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLT--LKTLA-----GLK 72 (195)
T ss_pred HHHHHhcccccC---CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhh--HHHHH-----HHH
Confidence 467788777532 24556667778877 45566766653223337877654 34444331 01111 223
Q ss_pred hhhhccccChhhhccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCccc--ceeeec
Q 018328 121 WWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKA--HRRMYK 198 (358)
Q Consensus 121 wwfakRfLHPdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~v--Hr~~~~ 198 (358)
|- .+.+ ..++||+..|||+-| ++.++++..++.-.+.+.+.+... .....-..|.+.++. ....|
T Consensus 73 w~-~~~c------~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g~--~~~~~~~~r~~~~kw~v~~~~y- 139 (195)
T PF01762_consen 73 WA-SKHC------PNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYGG--CIKNGPPIRDPSSKWYVSEEEY- 139 (195)
T ss_pred HH-HhhC------CchhheeecCcEEEE---ehHHhhhhhhhcccCccccccccc--cccCCccccccccCceeeeeec-
Confidence 32 2211 258999999999988 566777766666333333333321 122222334333321 11111
Q ss_pred ccCCCCCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhc
Q 018328 199 YKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQ 256 (358)
Q Consensus 199 ~~~~~~C~~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~q 256 (358)
....-|| |....+=++|+++.+.+.... .....-+-=|--+|.|++
T Consensus 140 --------~~~~yP~---y~~G~~yvls~~~v~~i~~~~-~~~~~~~~eDv~iGi~~~ 185 (195)
T PF01762_consen 140 --------PDDYYPP---YCSGGGYVLSSDVVKRIYKAS-SHTPFFPLEDVFIGILAE 185 (195)
T ss_pred --------ccccCCC---cCCCCeEEecHHHHHHHHHHh-hcCCCCCchHHHHHHHHH
Confidence 0112333 444677789999998885432 233333344555688886
No 18
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=66.00 E-value=4.5 Score=36.24 Aligned_cols=125 Identities=19% Similarity=0.108 Sum_probs=74.4
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHH--hCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKD--EGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTA 211 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~--~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~ 211 (358)
+.||||++.|+|+.++.-.+.++..-+.. .||-=+-|-.-+..+- .-.+-.-...+|-.++..
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~---~~~l~~~~~~~~~~~~~a------------ 94 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGF---WSRLEAAFFNFLPGVLQA------------ 94 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCH---HHHHHHHHHhHHHHHHHH------------
Confidence 79999999999999998888887765554 4443233333332221 111111011122222111
Q ss_pred CCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCC
Q 018328 212 PPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLP 277 (358)
Q Consensus 212 ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~ip 277 (358)
..-+.|+=.|+=.|+|++++.+ . -++.+.+.-.=||.++..+. ..+.+|...... |+++.+|
T Consensus 95 ~~~~~~~~G~~m~~rr~~L~~~-G-G~~~l~~~ladD~~l~~~~~-~~G~~v~~~~~~-v~~~~~~ 156 (175)
T PF13506_consen 95 LGGAPFAWGGSMAFRREALEEI-G-GFEALADYLADDYALGRRLR-ARGYRVVLSPYP-VVQTSVP 156 (175)
T ss_pred hcCCCceecceeeeEHHHHHHc-c-cHHHHhhhhhHHHHHHHHHH-HCCCeEEEcchh-eeecccC
Confidence 0124567778888999999876 2 24566667788999998775 346677666543 4455433
No 19
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=65.24 E-value=4.5 Score=35.42 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=27.4
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQP 170 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQP 170 (358)
+..|||++.|.|...+.-.+.++++.+...+..+...
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 3569999999998888777888777765555555443
No 20
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=65.03 E-value=3.6 Score=36.16 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=36.0
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDP 174 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 174 (358)
+.+|||++.|+|..++...+.+.++.+...++.+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 58999999999999999999999999988888888877544
No 21
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=63.41 E-value=5.5 Score=31.82 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=29.9
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 171 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPA 171 (358)
+..+||++.|+|..++.-.+.++++.+++.+-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 56779999999999999999999999999776554443
No 22
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=62.53 E-value=22 Score=30.81 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=32.5
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDP 174 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~ 174 (358)
+..|||++.|+|..++...+++++..+...+..++.+....
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 111 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRF 111 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeee
Confidence 45899999999999999888888777777776666655443
No 23
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=62.29 E-value=17 Score=32.07 Aligned_cols=124 Identities=16% Similarity=0.031 Sum_probs=63.7
Q ss_pred hccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCC--CCCCc--cc-ccccccccCcccceeeecccCCCCCCC
Q 018328 133 VAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD--PVKSE--VH-HPITARRRNSKAHRRMYKYKGSGRCDD 207 (358)
Q Consensus 133 v~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd--~~s~~--i~-h~iT~R~~~~~vHr~~~~~~~~~~C~~ 207 (358)
.+..|||++.|.|..++...+.+.+..+.+....+.-+... +.... +. +..++.. ..+....+ +
T Consensus 82 ~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~-- 150 (219)
T cd06913 82 QSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERYTRWINTLTR--EQLLTQVY-------T-- 150 (219)
T ss_pred hcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhhHHHHHhcCH--HHHHHHHH-------h--
Confidence 36799999999999998888888877776654333222211 11000 00 0000000 00000000 0
Q ss_pred CCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEecc
Q 018328 208 YSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 275 (358)
Q Consensus 208 ~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~ 275 (358)
+++| ++ -+-+-+++|++|+.+ .. +++..-+.+=|+-+.+.+. ..+.+|.-++...+.++.
T Consensus 151 -~~~~-~~---~~~~~~~rr~~~~~~-g~-f~~~~~~~~eD~~l~~r~~-~~g~~i~~~~~~~~~yr~ 210 (219)
T cd06913 151 -SHGP-TV---IMPTWFCSREWFSHV-GP-FDEGGKGVPEDLLFFYEHL-RKGGGVYRVDRCLLLYRY 210 (219)
T ss_pred -hcCC-cc---ccccceeehhHHhhc-CC-ccchhccchhHHHHHHHHH-HcCCceEEEcceeeeeee
Confidence 1111 11 111124789999877 33 3443335567887765432 235789999886665554
No 24
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=61.38 E-value=6.1 Score=35.29 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=32.2
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALD 173 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd 173 (358)
+..|||++.|+|..++...+.++++.+...+..+.++...
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 3569999999999999888888888887666777666543
No 25
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=56.85 E-value=12 Score=31.73 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=25.0
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCccc
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 168 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeIS 168 (358)
+..|||++.|+|...+.-.+.++++.+ +.+.++.
T Consensus 79 a~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~v 112 (181)
T cd04187 79 ARGDAVITMDADLQDPPELIPEMLAKW-EEGYDVV 112 (181)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHH-hCCCcEE
Confidence 345999999999998877778887763 3444443
No 26
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=54.85 E-value=7.3 Score=34.46 Aligned_cols=123 Identities=15% Similarity=0.039 Sum_probs=63.9
Q ss_pred cccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCCCc
Q 018328 135 EYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPPC 214 (358)
Q Consensus 135 ~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~ppc 214 (358)
.||||++.|.|..++.--+.++++.+...+..+.++...-..+. ..+..... .... ...+..... +.. ...+
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~--~~~---~~~~ 155 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGE-ESLFKRMC-YAEY-KGFFDIGMV--SRN---ERNA 155 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCC-ccHHHHHH-hHHH-HHHHHHHhc--ccc---ccCc
Confidence 49999999999999998889998888766777766542211110 01111000 0000 000000000 000 0011
Q ss_pred cceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeE
Q 018328 215 IGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYI 271 (358)
Q Consensus 215 TgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~V 271 (358)
.++-..+-+|+|++++.+ .. +++... +=|+.+..-+. ..+.++..++...+
T Consensus 156 -~~~~g~~~~~rr~~~~~i-Gg-f~~~~~--~eD~dl~~r~~-~~G~~~~~~~~~~~ 206 (236)
T cd06435 156 -IIQHGTMCLIRRSALDDV-GG-WDEWCI--TEDSELGLRMH-EAGYIGVYVAQSYG 206 (236)
T ss_pred -eEEecceEEEEHHHHHHh-CC-CCCccc--cchHHHHHHHH-HCCcEEEEcchhhc
Confidence 122233347999999998 33 233222 45887765543 23578888776433
No 27
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=54.69 E-value=22 Score=35.00 Aligned_cols=192 Identities=17% Similarity=0.172 Sum_probs=94.2
Q ss_pred CCCcEEEEEeccccccchhHHHhcC-----------CCCCcEEEEEEecCccCcccc--ccccCc------eeEEEe--e
Q 018328 58 PPMNLLAIAAGIKQKKIVDQIVRKF-----------PSKDFVVMLFHYDGVVDEWKD--LVWADR------AIHVSA--A 116 (358)
Q Consensus 58 ~~k~Lla~~VG~kqk~~Vd~~v~kf-----------~~~nF~vmLfhYDg~vd~W~d--~ews~~------aiHv~a--~ 116 (358)
.+.--|++|+ ++...++..+++.- +..++.|++. -||+.|+=.+ -++.+. .+++.. .
T Consensus 69 ~~~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVV-DDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 69 DVDLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIV-NDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CeEEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEE-eCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 3445666775 55555666555432 1225665554 6888775222 111111 244432 3
Q ss_pred cccchhhhccccChhhhccccEEEEecccccCCCCCHHHHHHHHHH---hCCcccCCCCCCC-CC-ccccccccccc-Cc
Q 018328 117 NQTKWWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKD---EGLEISQPALDPV-KS-EVHHPITARRR-NS 190 (358)
Q Consensus 117 kqtKwwfakRfLHPdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr~---~gLeISQPALd~~-s~-~i~h~iT~R~~-~~ 190 (358)
|+.|-.=.+.=+ -.+..|||++.|.|...+..++.++++.+++ .+.++..-+.... .+ ....+--.|+- ..
T Consensus 147 N~G~~~A~~~Gi---~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~ 223 (333)
T PTZ00260 147 NKGKGGAVRIGM---LASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMY 223 (333)
T ss_pred CCChHHHHHHHH---HHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHH
Confidence 444432111111 1357899999999999999999999998875 4555444332211 11 01111111111 11
Q ss_pred ccceeeecccCCCCCCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeee
Q 018328 191 KAHRRMYKYKGSGRCDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSE 269 (358)
Q Consensus 191 ~vHr~~~~~~~~~~C~~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~ 269 (358)
.+|... +.-.+..-.| ..+||- +|+|++++-+.. +-...+|+.|.-+-..+. ..+.+|+-|--.
T Consensus 224 ~~~~l~-~~~~~~~i~D-----~~~Gfk-----~~~r~~~~~i~~---~~~~~~~~fd~Ell~~a~-~~g~~I~EvPv~ 287 (333)
T PTZ00260 224 GFHFIV-NTICGTNLKD-----TQCGFK-----LFTRETARIIFP---SLHLERWAFDIEIVMIAQ-KLNLPIAEVPVN 287 (333)
T ss_pred HHHHHH-HHHcCCCccc-----CCCCeE-----EEeHHHHHHHhh---hccccCccchHHHHHHHH-HcCCCEEEEcee
Confidence 112110 0000000011 222333 789999987632 223458888888877765 223445544333
No 28
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=53.81 E-value=15 Score=31.75 Aligned_cols=125 Identities=18% Similarity=0.134 Sum_probs=67.8
Q ss_pred EEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCccc--ceeee-cccCCCCCCCCCCCCCc
Q 018328 138 YIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKA--HRRMY-KYKGSGRCDDYSTAPPC 214 (358)
Q Consensus 138 YIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~v--Hr~~~-~~~~~~~C~~~~~~ppc 214 (358)
||.+.|+|-.++.....+..+.++.-+..+.|+...... ....+|.-...... |.... .....+.|.
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 70 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPL-------- 70 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCc--------
Confidence 789999999999988888888888558888888876532 11112221111100 00000 000111111
Q ss_pred cceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCC
Q 018328 215 IGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPT 278 (358)
Q Consensus 215 TgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~ipt 278 (358)
++=.-.=+|++++++.+ . -.+ ..--.|=|+.++.-+. ..+.+++.++...+.|...+|
T Consensus 71 --~~~G~~~~~r~~~l~~v-g-~~~-~~~~~~ED~~l~~~l~-~~G~~~~~~~~~~~~~~~p~t 128 (193)
T PF13632_consen 71 --FLSGSGMLFRREALREV-G-GFD-DPFSIGEDMDLGFRLR-RAGYRIVYVPDAIVYTEAPPT 128 (193)
T ss_pred --cccCcceeeeHHHHHHh-C-ccc-ccccccchHHHHHHHH-HCCCEEEEecccceeeeCCCC
Confidence 11133457899999877 2 122 1123335666653221 235789999988554444333
No 29
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=50.04 E-value=16 Score=34.87 Aligned_cols=192 Identities=18% Similarity=0.170 Sum_probs=77.5
Q ss_pred EEEEEeccccccchhHHHhcCCCCCcEEEEE-EecCccCccccccccCceeEEEeeccc-----chhhhcc-cc-Chhhh
Q 018328 62 LLAIAAGIKQKKIVDQIVRKFPSKDFVVMLF-HYDGVVDEWKDLVWADRAIHVSAANQT-----KWWFAKR-FL-HPDIV 133 (358)
Q Consensus 62 Lla~~VG~kqk~~Vd~~v~kf~~~nF~vmLf-hYDg~vd~W~d~ews~~aiHv~a~kqt-----KwwfakR-fL-HPdiv 133 (358)
..++|...--+..+..+.+.|.. ..+-.+| .-|..-.+.... ...|+...+.. |++..+. +. +--+-
T Consensus 10 i~V~T~~k~h~tR~~~I~~TW~~-~~~~~~~ifsd~~d~~l~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~y~~~~~ 84 (252)
T PF02434_consen 10 IAVKTTKKFHKTRAPAIKQTWAK-RCNKQTFIFSDAEDPSLPTV----TGVHLVNPNCDAGHCRKTLSCKMAYEYDHFLN 84 (252)
T ss_dssp EEEE--GGGTTTTHHHHHHTGGG-GSGGGEEEEESS--HHHHHH----HGGGEEE-------------HHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHHHHh-hcCCceEEecCccccccccc----cccccccCCCcchhhHHHHHHHHHHHHHhhhc
Confidence 34445544456677777777743 2232333 344432222211 12244433322 1111121 11 11233
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCCCCCCCCcccccccccccCcccceeeecccCCCCCCCCCCCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPALDPVKSEVHHPITARRRNSKAHRRMYKYKGSGRCDDYSTAPP 213 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~s~~i~h~iT~R~~~~~vHr~~~~~~~~~~C~~~~~~pp 213 (358)
..+||+++.|||.-| ++++++++...++ -+||-.=...+ ..++++.-.+.. .+ + ..+.
T Consensus 85 ~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~--~~~~~yiG~~~-~~~~~~~~~~~~-~~------~---------~~~~ 142 (252)
T PF02434_consen 85 SDKDWFCFADDDTYV---NVENLRRLLSKYD--PSEPIYIGRPS-GDRPIEIIHRFN-PN------K---------SKDS 142 (252)
T ss_dssp HT-SEEEEEETTEEE----HHHHHHHHTTS---TTS--EEE-EE------------------------------------
T ss_pred CCceEEEEEeCCcee---cHHHHHHHHhhCC--CccCEEeeeec-cCccceeecccc-cc------c---------cCcC
Confidence 578999999999987 7778888777654 23443211111 122222211000 00 0 0001
Q ss_pred ccceEEe-ecccccHHHHHHH--hh----hhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCCCCCCC
Q 018328 214 CIGWVEM-MAPVFSRAAWRCA--WY----MIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLGVTT 283 (358)
Q Consensus 214 cTgFVEi-MaPVFSR~Awrcv--w~----miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~iptLg~~~ 283 (358)
+-.|.-+ -.=|+||.+.+.+ |. .++.+....+.=|..+|+|++. --+|-++++ .-.|.-.|.|....
T Consensus 143 ~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~--~lgv~lt~s-~~fhs~~~~l~~~~ 216 (252)
T PF02434_consen 143 GFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIEN--LLGVPLTHS-PLFHSHLENLQDYN 216 (252)
T ss_dssp ---EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHH--TT---EEE--TT---SSS-GGG--
T ss_pred ceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHh--cCCcceeec-hhhcccCcccccCC
Confidence 1122222 2247899998877 32 2333444467889999999973 235555665 55788888876554
No 30
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=49.03 E-value=15 Score=30.43 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=38.8
Q ss_pred ccccChhhhccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCC--CCCCCCcccc
Q 018328 125 KRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA--LDPVKSEVHH 181 (358)
Q Consensus 125 kRfLHPdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPA--Ld~~s~~i~h 181 (358)
.-|+||.+.++--.|||+-|++||.... ++-.++.|+.||.-+ |+. +|++.|
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~gA~lde-kgkv~~ 87 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEGATLDE-KGKVVW 87 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCCeEEcc-CCCEEE
Confidence 3499999999999999999999997644 455677778888655 444 344444
No 31
>PRK11204 N-glycosyltransferase; Provisional
Probab=44.94 E-value=35 Score=33.70 Aligned_cols=201 Identities=15% Similarity=0.093 Sum_probs=96.1
Q ss_pred CCCcEEEEEeccccccchhHHHhcCC---CCCcEEEEEEecCccCccccc--cccCc--eeEEEe--ecccchhhhcccc
Q 018328 58 PPMNLLAIAAGIKQKKIVDQIVRKFP---SKDFVVMLFHYDGVVDEWKDL--VWADR--AIHVSA--ANQTKWWFAKRFL 128 (358)
Q Consensus 58 ~~k~Lla~~VG~kqk~~Vd~~v~kf~---~~nF~vmLfhYDg~vd~W~d~--ews~~--aiHv~a--~kqtKwwfakRfL 128 (358)
.++.-+.+|+=.. .+.+.+.++... -.+++|++.. ||..|+=.+. ++..+ -+++.. .+..|=.=.+
T Consensus 53 ~p~vsViIp~yne-~~~i~~~l~sl~~q~yp~~eiiVvd-D~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln--- 127 (420)
T PRK11204 53 YPGVSILVPCYNE-GENVEETISHLLALRYPNYEVIAIN-DGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALN--- 127 (420)
T ss_pred CCCEEEEEecCCC-HHHHHHHHHHHHhCCCCCeEEEEEE-CCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHH---
Confidence 4567777776544 345555554321 2368887765 5665542221 11111 133322 2333311111
Q ss_pred ChhhhccccEEEEecccccCCCCCHHHHHHHHH-HhCCcccC--CCCCCCCCcccccccccccCc-ccceeeecccCCCC
Q 018328 129 HPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVK-DEGLEISQ--PALDPVKSEVHHPITARRRNS-KAHRRMYKYKGSGR 204 (358)
Q Consensus 129 HPdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr-~~gLeISQ--PALd~~s~~i~h~iT~R~~~~-~vHr~~~~~~~~~~ 204 (358)
.-=-.+.||||++.|.|..++...++++++.++ ..+..+.| |......+-+.+..+..-... ...++.. ...+
T Consensus 128 ~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~- 204 (420)
T PRK11204 128 TGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQ--RVYG- 204 (420)
T ss_pred HHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHH--HHhC-
Confidence 111126899999999999999888888888874 33444444 222211110111000000000 0000000 0000
Q ss_pred CCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEeccCCCCC
Q 018328 205 CDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLGLPTLG 280 (358)
Q Consensus 205 C~~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~iptLg 280 (358)
....+-.++=+|+|+++..+ ..+..+.. +=|+.+..-+. ..+.++..+....+.|....|+.
T Consensus 205 ---------~~~~~~G~~~~~rr~~l~~v-gg~~~~~~---~ED~~l~~rl~-~~G~~i~~~p~~~~~~~~p~t~~ 266 (420)
T PRK11204 205 ---------RVFTVSGVITAFRKSALHEV-GYWSTDMI---TEDIDISWKLQ-LRGWDIRYEPRALCWILMPETLK 266 (420)
T ss_pred ---------CceEecceeeeeeHHHHHHh-CCCCCCcc---cchHHHHHHHH-HcCCeEEeccccEEEeECcccHH
Confidence 00112234457899999877 22222222 35776654443 23568888887777776655554
No 32
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=41.05 E-value=24 Score=27.23 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=24.2
Q ss_pred cccEEEEecccccCCCCCHHHH-HHHHHHhCCcccCC
Q 018328 135 EYNYIFLWDEDIGVENFNPRRY-LSIVKDEGLEISQP 170 (358)
Q Consensus 135 ~YdYIflwDdDL~vd~f~i~ry-~~Ivr~~gLeISQP 170 (358)
.+||+++.|+|..++...+.++ .......+..+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG 113 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEec
Confidence 7999999999999888777766 22233333444433
No 33
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=39.43 E-value=19 Score=28.53 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=26.3
Q ss_pred cccEEEEecccccCCCCCHHHH-HHHHHHhCCcccCCCC
Q 018328 135 EYNYIFLWDEDIGVENFNPRRY-LSIVKDEGLEISQPAL 172 (358)
Q Consensus 135 ~YdYIflwDdDL~vd~f~i~ry-~~Ivr~~gLeISQPAL 172 (358)
.+|||++.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 8999999999998887777777 3434444444444443
No 34
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=38.25 E-value=26 Score=29.91 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=29.6
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHH-HHhCCcccCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIV-KDEGLEISQP 170 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Iv-r~~gLeISQP 170 (358)
+.+|||++.|+|-.++...++++++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 578999999999999888888888887 5555655544
No 35
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=36.36 E-value=50 Score=31.57 Aligned_cols=95 Identities=12% Similarity=0.212 Sum_probs=52.4
Q ss_pred ccccccchhHHHhcCCC-CCcEEEEEEecCccCccccccccCceeEEEeecccchhhhccccChhhhccccEEEEecccc
Q 018328 68 GIKQKKIVDQIVRKFPS-KDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNYIFLWDEDI 146 (358)
Q Consensus 68 G~kqk~~Vd~~v~kf~~-~nF~vmLfhYDg~vd~W~d~ews~~aiHv~a~kqtKwwfakRfLHPdiv~~YdYIflwDdDL 146 (358)
..+......++|+.... ..-.=+++...+...--....|....+-|....+++=-+-.||+..+ .-+=|.||..|||+
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~-~i~T~AVl~~DDDv 86 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDP-EIETDAVLSLDDDV 86 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--T-T--SSEEEEEETTE
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCcc-ccCcceEEEecCCc
Confidence 45555555666665422 22332333333322222235565555666666666666778888543 33579999999999
Q ss_pred cCCCCCHHHHHHHHHHh
Q 018328 147 GVENFNPRRYLSIVKDE 163 (358)
Q Consensus 147 ~vd~f~i~ry~~Ivr~~ 163 (358)
.++..+++.=|+.-+++
T Consensus 87 ~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREF 103 (247)
T ss_dssp EE-HHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 99999999989888754
No 36
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.07 E-value=28 Score=30.01 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.2
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHhCCcccCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEISQPA 171 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeISQPA 171 (358)
+.+|||++.|+|..++.--++++++.+.+.+-.+.+.+
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGP 118 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeee
Confidence 57999999999999988888888886666554444433
No 37
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=34.47 E-value=69 Score=30.37 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=52.1
Q ss_pred EEEEecccccc-----chhHHH---hcC-CCCCcEEEEEEecCccCccc-cc-cccC--cee-EEEeecccc-hhhhccc
Q 018328 63 LAIAAGIKQKK-----IVDQIV---RKF-PSKDFVVMLFHYDGVVDEWK-DL-VWAD--RAI-HVSAANQTK-WWFAKRF 127 (358)
Q Consensus 63 la~~VG~kqk~-----~Vd~~v---~kf-~~~nF~vmLfhYDg~vd~W~-d~-ews~--~ai-Hv~a~kqtK-wwfakRf 127 (358)
+++||..+... .+..++ +++ +..+|.|++..++.. +++. .+ +... ..+ .+....+.+ |=.++-.
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSS-DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCc-hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 67899888742 332223 332 346888888887664 3341 11 1111 122 111111111 2222211
Q ss_pred cChhhhccccEEEEecccccCCCCCHHHHHH
Q 018328 128 LHPDIVAEYNYIFLWDEDIGVENFNPRRYLS 158 (358)
Q Consensus 128 LHPdiv~~YdYIflwDdDL~vd~f~i~ry~~ 158 (358)
---=-.+.-|||+++|-|+.++...+.+++.
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 0112237899999999999999888888888
No 38
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=33.28 E-value=33 Score=29.23 Aligned_cols=47 Identities=21% Similarity=0.094 Sum_probs=31.6
Q ss_pred cccHHHHHHHhhhhcCCCcccchhhhhhhhhhcCCCCCcEEEEeeeeEEecc
Q 018328 224 VFSRAAWRCAWYMIQNDLIHAWGLDIQLGYCAQGDRTKNVGVVDSEYIVHLG 275 (358)
Q Consensus 224 VFSR~Awrcvw~miqNDLvhGWGLD~~w~~c~qg~~~~kiGVVDa~~VvH~~ 275 (358)
+|+|++++.+- . +... ..|+-|+.+..++.. ..++.+++...+.|+.
T Consensus 158 ~~r~~~~~~~~-~-~~~~-~~~~~D~~~~~~~~~--~~~~~~~~~~~~~~r~ 204 (214)
T cd04196 158 AFNRELLELAL-P-FPDA-DVIMHDWWLALLASA--FGKVVFLDEPLILYRQ 204 (214)
T ss_pred eEEHHHHHhhc-c-cccc-ccccchHHHHHHHHH--cCceEEcchhHHHHhc
Confidence 69999998872 2 2222 267778777665542 4579999888776665
No 39
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=32.49 E-value=22 Score=28.08 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=19.4
Q ss_pred hhhhccccEEEEecccccCCCCCHHHHHHHHHHhC
Q 018328 130 PDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 164 (358)
Q Consensus 130 Pdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~g 164 (358)
..+...|||||++|.+ +++-.|+.|
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G 37 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLG 37 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcC
Confidence 4788899999999975 455666666
No 40
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=31.90 E-value=96 Score=28.73 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=54.1
Q ss_pred CCcEEEEEeccccccchhHHHhcCCCCCcEEEEEEecCccCccccccccCceeEEEeecccchhhhccccChhhhccccE
Q 018328 59 PMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVMLFHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIVAEYNY 138 (358)
Q Consensus 59 ~k~Lla~~VG~kqk~~Vd~~v~kf~~~nF~vmLfhYDg~vd~W~d~ews~~aiHv~a~kqtKwwfakRfLHPdiv~~YdY 138 (358)
+-.+..++-|++.. +.+++-+-....++.+-+..++- .++..+++.. -| -++.-|+ ||+=|+++..||-
T Consensus 30 ~~~~~il~~~is~~-~~~~L~~~~~~~~~~i~~~~~~~--~~~~~~~~~~--~~-----~~~~~y~-RL~i~~llp~~~k 98 (246)
T cd00505 30 PLRFHVLTNPLSDT-FKAALDNLRKLYNFNYELIPVDI--LDSVDSEHLK--RP-----IKIVTLT-KLHLPNLVPDYDK 98 (246)
T ss_pred CeEEEEEEccccHH-HHHHHHHHHhccCceEEEEeccc--cCcchhhhhc--Cc-----cccceeH-HHHHHHHhhccCe
Confidence 34577777776653 44433222222467777766642 3444443320 01 1333344 4555999888999
Q ss_pred EEEecccccCCCCCHHHHHHH
Q 018328 139 IFLWDEDIGVENFNPRRYLSI 159 (358)
Q Consensus 139 IflwDdDL~vd~f~i~ry~~I 159 (358)
|...|.|+.|- -+++.++++
T Consensus 99 vlYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 99 ILYVDADILVL-TDIDELWDT 118 (246)
T ss_pred EEEEcCCeeec-cCHHHHhhc
Confidence 99999999986 688888865
No 41
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=31.52 E-value=31 Score=31.14 Aligned_cols=55 Identities=20% Similarity=0.513 Sum_probs=37.1
Q ss_pred hhhhccccChhhhccccEEEEeccc-------ccCCCCCHH-----------HHHHHHHHhCCcccCCCCCCCCCccccc
Q 018328 121 WWFAKRFLHPDIVAEYNYIFLWDED-------IGVENFNPR-----------RYLSIVKDEGLEISQPALDPVKSEVHHP 182 (358)
Q Consensus 121 wwfakRfLHPdiv~~YdYIflwDdD-------L~vd~f~i~-----------ry~~Ivr~~gLeISQPALd~~s~~i~h~ 182 (358)
=|+++||+-|+- +++|+.++. .+--.||+. .|=-++++||| ..|||..= ++|-|.
T Consensus 15 ~WLIrRFIDp~A----~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~l-a~IV~~ 87 (135)
T PF09828_consen 15 PWLIRRFIDPEA----EFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALARL-AAIVRG 87 (135)
T ss_pred HHHHHHhcCCCc----eEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHHH-HHHHHH
Confidence 499999998863 677887766 122234332 46678899999 89999763 345443
No 42
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=31.08 E-value=46 Score=30.01 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=29.7
Q ss_pred ccccEEEEecccccCCCCCHHHHHHHHHHh--CCcccCCC
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSIVKDE--GLEISQPA 171 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~--gLeISQPA 171 (358)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 678999999999999988888888877643 44455554
No 43
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=29.71 E-value=49 Score=29.82 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=37.6
Q ss_pred CCCCCCccccCCCcceecCCCCCCCCCCCC-CCCcEEEEEecccccc---chh----------HHHhcCCC------CCc
Q 018328 28 EALPEGIVSKTSNLEMRPLWSSPSKLNNQR-PPMNLLAIAAGIKQKK---IVD----------QIVRKFPS------KDF 87 (358)
Q Consensus 28 e~Lp~giv~~~sd~~lr~Lwg~~~~~~~~~-~~k~Lla~~VG~kqk~---~Vd----------~~v~kf~~------~nF 87 (358)
++||+.-|.+-+|-....|-.. .+. .+=.|++++--+.... .++ .++++|.. .-|
T Consensus 34 ~Rlp~~~v~r~aD~~p~~l~~~-----l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~~ 108 (169)
T PF07976_consen 34 RRLPSAKVVRHADGNPVHLQDD-----LPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSVF 108 (169)
T ss_dssp CB----EEEETTTTEEEEGGGG-------SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSSE
T ss_pred cccCCceEEEEcCCCChhHhhh-----cccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCee
Confidence 4789999999999887777431 222 3335666663333322 122 34556643 339
Q ss_pred EEEEEEecCccCccccccccC
Q 018328 88 VVMLFHYDGVVDEWKDLVWAD 108 (358)
Q Consensus 88 ~vmLfhYDg~vd~W~d~ews~ 108 (358)
+++|+| -..+.++||.+
T Consensus 109 ~~~~I~----~~~~~~~e~~d 125 (169)
T PF07976_consen 109 DVLLIH----SSPRDEVELFD 125 (169)
T ss_dssp EEEEEE----SS-CCCS-GGG
T ss_pred EEEEEe----cCCCCceeHHH
Confidence 999999 24566777754
No 44
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=29.48 E-value=51 Score=32.73 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=29.7
Q ss_pred ccEEEEecccccCCCCCHHHHHHHHHHhCCccc
Q 018328 136 YNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 168 (358)
Q Consensus 136 YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeIS 168 (358)
+|||++.|.|..++...++++++.+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999999999999999988776654
No 45
>TIGR02165 cas_GSU0054 CRISPR-associated protein, GSU0054 family. This model represents a rare CRISPR-associated protein. So far, members are found in Geobacter sulfurreducens and in two unpublished genomes: Gemmata obscuriglobus and Actinomyces naeslundii.CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.
Probab=28.23 E-value=10 Score=39.04 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=23.9
Q ss_pred CCCCCccceEEeecccccHHHHHHHhhhhcCCCcccchhhhhhhh
Q 018328 209 STAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAWGLDIQLGY 253 (358)
Q Consensus 209 ~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGWGLD~~w~~ 253 (358)
++.|.++.++|+.+ .|-||=.+-|||+|++.|.
T Consensus 75 ~~~pe~a~~~e~iv------------~~A~~i~hLGWGiDmv~G~ 107 (465)
T TIGR02165 75 PTAPEFADHKEAIV------------EAAQNINHLGWGIDMVAGD 107 (465)
T ss_pred CCCchHHHHHHHHH------------HHHhhccccccchhhcccc
Confidence 45555555555533 6789999999999999864
No 46
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=27.78 E-value=42 Score=28.12 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=19.9
Q ss_pred ccccEEEEecccccCCCCCHHHHHHH
Q 018328 134 AEYNYIFLWDEDIGVENFNPRRYLSI 159 (358)
Q Consensus 134 ~~YdYIflwDdDL~vd~f~i~ry~~I 159 (358)
+.+|||+++|+|..++..-+.+.++.
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~ 103 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIEL 103 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHH
Confidence 67999999999998866555555544
No 47
>PLN02867 Probable galacturonosyltransferase
Probab=27.22 E-value=29 Score=37.49 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=30.1
Q ss_pred ccccChhhhccccEEEEecccccCCCCCHHHHHHH
Q 018328 125 KRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSI 159 (358)
Q Consensus 125 kRfLHPdiv~~YdYIflwDdDL~vd~f~i~ry~~I 159 (358)
-||+=||++.++|-|+..|+|+-|.. |+..+++|
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqg-DLseLwdi 367 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQH-DLSSLWEL 367 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcC-chHHHHhC
Confidence 45667999999999999999999988 88888876
No 48
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=25.11 E-value=38 Score=30.58 Aligned_cols=11 Identities=45% Similarity=0.751 Sum_probs=9.6
Q ss_pred cEEEEEEecCc
Q 018328 87 FVVMLFHYDGV 97 (358)
Q Consensus 87 F~vmLfhYDg~ 97 (358)
-+-+||||-|.
T Consensus 90 ~~RvLFHYnGh 100 (154)
T PF14538_consen 90 DERVLFHYNGH 100 (154)
T ss_pred CceEEEEECCC
Confidence 49999999994
No 49
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=24.57 E-value=39 Score=34.33 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=33.3
Q ss_pred CCCCCCCCCccceEEeecccccHHHHHHHhhhhcCCCcccc
Q 018328 205 CDDYSTAPPCIGWVEMMAPVFSRAAWRCAWYMIQNDLIHAW 245 (358)
Q Consensus 205 C~~~~~~ppcTgFVEiMaPVFSR~Awrcvw~miqNDLvhGW 245 (358)
|+-+..+.-.|.|||-+-|||++.+..-+-.-.+-.++-||
T Consensus 80 ~am~~sg~~is~~~e~~d~V~q~q~~~~l~~tGrp~~VVGW 120 (316)
T KOG1555|consen 80 FAMPQSGTGISKFVEAVDPVFQTQMMDLLKQTGRPELVVGW 120 (316)
T ss_pred eccccccceecccchhccHHHHHHHHHHHHhcCCcceEEee
Confidence 44445556688999999999999999888766777788888
No 50
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=23.13 E-value=2.6e+02 Score=28.21 Aligned_cols=102 Identities=18% Similarity=0.241 Sum_probs=63.5
Q ss_pred cEEEEEeccccccchhHHHh--cCCCCCcEEEEEEecCccCcccc--------c--cccCceeEEEeeccc---chhh--
Q 018328 61 NLLAIAAGIKQKKIVDQIVR--KFPSKDFVVMLFHYDGVVDEWKD--------L--VWADRAIHVSAANQT---KWWF-- 123 (358)
Q Consensus 61 ~Lla~~VG~kqk~~Vd~~v~--kf~~~nF~vmLfhYDg~vd~W~d--------~--ews~~aiHv~a~kqt---Kwwf-- 123 (358)
.|..+++|..-...+..+.+ .+....+.+.+|.-| ...+|.. . +.....+|-.....+ .|-.
T Consensus 2 ~~~vv~~g~~~~~~~~~lkSil~~n~~~l~Fhi~~d~-~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l~ 80 (304)
T cd06430 2 HLAVVACGERLEETLTMLKSAIVFSQKPLRFHIFAED-QLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKLF 80 (304)
T ss_pred EEEEEEcCCcHHHHHHHHHHHHHhCCCCEEEEEEECC-ccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhcc
Confidence 46788889874333333333 334457888888844 3333332 1 222334454433333 3422
Q ss_pred ----hccccChhhhccccEEEEecccccCCCCCHHHHHHHHHHhC
Q 018328 124 ----AKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 164 (358)
Q Consensus 124 ----akRfLHPdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~g 164 (358)
..|++=|+++.++|-|.-.|-|+.+ .-++..++++.+.++
T Consensus 81 ~~~~y~RL~ip~lLp~~dkvLYLD~Dii~-~~dI~eL~~~~~df~ 124 (304)
T cd06430 81 KPCAAQRLFLPSLLPDVDSLLYVDTDILF-LRPVEEIWSFLKKFN 124 (304)
T ss_pred cHHHHHHHHHHHHhhhhceEEEeccceee-cCCHHHHHHHHhhcC
Confidence 3467779999999999999999988 468999999866553
No 51
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=22.65 E-value=38 Score=38.63 Aligned_cols=66 Identities=24% Similarity=0.423 Sum_probs=49.4
Q ss_pred CCccccCCCcceecCCCCCCCCCCCCCCCcEEEEEeccccccchhHHHhcCCC--CCcEEEE--------EEecCc
Q 018328 32 EGIVSKTSNLEMRPLWSSPSKLNNQRPPMNLLAIAAGIKQKKIVDQIVRKFPS--KDFVVML--------FHYDGV 97 (358)
Q Consensus 32 ~giv~~~sd~~lr~Lwg~~~~~~~~~~~k~Lla~~VG~kqk~~Vd~~v~kf~~--~nF~vmL--------fhYDg~ 97 (358)
.|+|...++--++.|.++.+.-.......-|-+++||.|.|.-.+.++.|..+ .+|--|+ +|+||.
T Consensus 607 e~Li~es~~~ll~sLF~S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs 682 (1259)
T KOG0163|consen 607 EGLIEESDNPLLVSLFPSGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGS 682 (1259)
T ss_pred HHHHHhccchHHHHHccCCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHH
Confidence 35667777777889998865543345566799999999999999999998643 3555444 899996
No 52
>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]
Probab=22.27 E-value=1e+02 Score=31.61 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=61.2
Q ss_pred CCcEEEEEeccccccchhHHHhcCCCCCcEEEE-EEecCccCccccccccCceeEEEeecccchhhhccccChhhh
Q 018328 59 PMNLLAIAAGIKQKKIVDQIVRKFPSKDFVVML-FHYDGVVDEWKDLVWADRAIHVSAANQTKWWFAKRFLHPDIV 133 (358)
Q Consensus 59 ~k~Lla~~VG~kqk~~Vd~~v~kf~~~nF~vmL-fhYDg~vd~W~d~ews~~aiHv~a~kqtKwwfakRfLHPdiv 133 (358)
...|++-.+|.--...++.++.++++.+|..++ +-|-+....=....||-+.--+....-.-|-+.+-|+||+|-
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id 82 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEID 82 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchh
Confidence 457889999999999999999999988887766 677676666667888888888887777779899999998653
No 53
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.26 E-value=1e+02 Score=34.25 Aligned_cols=97 Identities=21% Similarity=0.302 Sum_probs=69.1
Q ss_pred eccccccchhHHHhcCCCCCcEEEEEEecCc-------------------c-------CccccccccCceeEEEeecccc
Q 018328 67 AGIKQKKIVDQIVRKFPSKDFVVMLFHYDGV-------------------V-------DEWKDLVWADRAIHVSAANQTK 120 (358)
Q Consensus 67 VG~kqk~~Vd~~v~kf~~~nF~vmLfhYDg~-------------------v-------d~W~d~ews~~aiHv~a~kqtK 120 (358)
+|..-|+.-.++=-..+.++|+||++-|.-. | +--+|+-|-+-.+-|....-.|
T Consensus 631 ~gGsGkEF~~aLGGN~pREQFTvVmLTYERe~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~WPdigvPv~viR~~~ 710 (907)
T KOG2264|consen 631 AGGSGKEFSKALGGNRPREQFTVVMLTYEREAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLTWPDIGVPVEVIRVAE 710 (907)
T ss_pred CCCchHHHHHHhcCCCccceEEEEEEEehHHHHHHHHHHHhhCCcccceEEEEeCCCCCChhcccCcCCCCceEEEEccc
Confidence 3455666666666667889999999988532 2 2234778877666666666666
Q ss_pred hhhhccccChhhhccccEEEEecccccCCCCCHHHHHHHHHHhC
Q 018328 121 WWFAKRFLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEG 164 (358)
Q Consensus 121 wwfakRfLHPdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~g 164 (358)
==+-+|||-.|.++ =+.|.=.|||..+-|..|-==|..-|+..
T Consensus 711 NsLNNRFlPwd~IE-TEAvLS~DDDahLrhdEI~fgFRVWRE~R 753 (907)
T KOG2264|consen 711 NSLNNRFLPWDRIE-TEAVLSLDDDAHLRHDEIIFGFRVWRENR 753 (907)
T ss_pred ccccccccCchhhh-heeeeecccchhhhhhheeeeeehhhhcc
Confidence 66889999888774 68999999999998887755555555543
No 54
>PRK13863 type IV secretion system T-DNA border endonuclease VirD2; Provisional
Probab=21.03 E-value=1.8e+02 Score=30.98 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=50.9
Q ss_pred CcEEEEEeccccccchhH---HH-hcCCC----CCcEEEE-EEecCccCccccccccCceeEEEee---cccc-hhhhcc
Q 018328 60 MNLLAIAAGIKQKKIVDQ---IV-RKFPS----KDFVVML-FHYDGVVDEWKDLVWADRAIHVSAA---NQTK-WWFAKR 126 (358)
Q Consensus 60 k~Lla~~VG~kqk~~Vd~---~v-~kf~~----~nF~vmL-fhYDg~vd~W~d~ews~~aiHv~a~---kqtK-wwfakR 126 (358)
.-||.||.|-+..+..++ +. ++|.+ .+|++|+ ||-|-. -..+||++. +..| |-++.+
T Consensus 84 NIVLSMPaGTd~eAVrdAARefA~E~FgsG~~G~~~dYV~AlH~D~d----------HPHVHLvVnrRd~~G~~~lri~~ 153 (446)
T PRK13863 84 HIIVSFPAGTSQVAAYAASREWAAEMFGSGAGGGRYNYLTAFHIDRD----------HPHLHVVVNRRELLGHGWLKISR 153 (446)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhCCCCCCCceeEEEEEecCCC----------CCeEEEEEEeecCCCCceeeecC
Confidence 368899999877766552 33 46764 3677655 787762 358899877 4444 544332
Q ss_pred ccChhhhccccEEEEecccccCCCCCHHHHHHHHHHhCCccc
Q 018328 127 FLHPDIVAEYNYIFLWDEDIGVENFNPRRYLSIVKDEGLEIS 168 (358)
Q Consensus 127 fLHPdiv~~YdYIflwDdDL~vd~f~i~ry~~Ivr~~gLeIS 168 (358)
.|+++- |+ ---++|-++.+++|+++-
T Consensus 154 -rk~dlN--ld-------------~~Re~FAE~LRe~GIeae 179 (446)
T PRK13863 154 -RHPQLN--YD-------------ALRIKMAEISLRHGIVLD 179 (446)
T ss_pred -CCcccc--HH-------------HHHHHHHHHHHhcCceee
Confidence 233320 10 012578889999998873
No 55
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=20.74 E-value=3.5e+02 Score=27.12 Aligned_cols=95 Identities=19% Similarity=0.314 Sum_probs=55.4
Q ss_pred CCCcEEEEEeccccccchhHHHh---cCCCCCcEEEEEEecCccCcccccccc----CceeEEEeecccchh-hh--cc-
Q 018328 58 PPMNLLAIAAGIKQKKIVDQIVR---KFPSKDFVVMLFHYDGVVDEWKDLVWA----DRAIHVSAANQTKWW-FA--KR- 126 (358)
Q Consensus 58 ~~k~Lla~~VG~kqk~~Vd~~v~---kf~~~nF~vmLfhYDg~vd~W~d~ews----~~aiHv~a~kqtKww-fa--kR- 126 (358)
..--|+.+++|.=.. ..+..++ |+...++.|.-|-+= |.-..++.- .+-+.|...++.+.| .. .|
T Consensus 34 ~tIgl~vfatGkY~~-f~~~F~~SAEk~Fm~g~~v~YyVFT---D~~~~~p~v~lg~~r~~~V~~v~~~~~W~~~sl~Rm 109 (271)
T cd02515 34 ITIGLTVFAVGKYTE-FLERFLESAEKHFMVGYRVIYYIFT---DKPAAVPEVELGPGRRLTVLKIAEESRWQDISMRRM 109 (271)
T ss_pred CEEEEEEEEeccHHH-HHHHHHHHHHHhccCCCeeEEEEEe---CCcccCcccccCCCceeEEEEeccccCCcHHHHHHH
Confidence 334689999997443 4333332 334678888777663 333334432 244555555555544 32 22
Q ss_pred --cc-C--hhhhccccEEEEecccccC-CCCCHHHH
Q 018328 127 --FL-H--PDIVAEYNYIFLWDEDIGV-ENFNPRRY 156 (358)
Q Consensus 127 --fL-H--Pdiv~~YdYIflwDdDL~v-d~f~i~ry 156 (358)
|+ | -.+..++||+|..|=|... +++..+-+
T Consensus 110 ~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig~E~L 145 (271)
T cd02515 110 KTLADHIADRIGHEVDYLFCMDVDMVFQGPFGVETL 145 (271)
T ss_pred HHHHHHHHHhhcccCCEEEEeeCCceEeecCCHHHh
Confidence 32 2 3367899999999977654 56665554
No 56
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=20.60 E-value=1.6e+02 Score=31.08 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=66.9
Q ss_pred ccChh-hhccccEEEEecccccCCCCCHHHHHHHHH---HhCCcccCCCCCCCCCcccccccccc-cCcccceeeecccC
Q 018328 127 FLHPD-IVAEYNYIFLWDEDIGVENFNPRRYLSIVK---DEGLEISQPALDPVKSEVHHPITARR-RNSKAHRRMYKYKG 201 (358)
Q Consensus 127 fLHPd-iv~~YdYIflwDdDL~vd~f~i~ry~~Ivr---~~gLeISQPALd~~s~~i~h~iT~R~-~~~~vHr~~~~~~~ 201 (358)
.++|- -.+.||||++.|+||.+-..++-.+-.-|. +.+|-=--|-.--..| -.+|+-. .-...|-|.|-.
T Consensus 161 N~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~G---f~atle~~~fgTsh~r~yl~-- 235 (431)
T KOG2547|consen 161 NMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQG---FDATLEQVYFGTSHPRIYLS-- 235 (431)
T ss_pred ccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeecccc---chhhhhheeeccCCceEEEc--
Confidence 34555 358899999999999999998888877776 3333332332211112 1122221 122335454421
Q ss_pred CCCCCCCCCCCCccceEE--eecccccHHHHHHHhhhhcCCCcccchh--hhhhhhhhcCCCCCcEEEE
Q 018328 202 SGRCDDYSTAPPCIGWVE--MMAPVFSRAAWRCAWYMIQNDLIHAWGL--DIQLGYCAQGDRTKNVGVV 266 (358)
Q Consensus 202 ~~~C~~~~~~ppcTgFVE--iMaPVFSR~Awrcvw~miqNDLvhGWGL--D~~w~~c~qg~~~~kiGVV 266 (358)
| +|++|+= .|--...++|+...=.+. ..||=| ||-..+|.- .|+-|.+++
T Consensus 236 -~---------n~~~~~c~tgms~~mrK~~ld~~ggi~----~f~~yLaedyFaaksll-SRG~ksais 289 (431)
T KOG2547|consen 236 -G---------NVLGFNCSTGMSSMMRKEALDECGGIS----AFGGYLAEDYFAAKSLL-SRGWKSAIS 289 (431)
T ss_pred -c---------ccccccccccHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHH-hhhhhhhhc
Confidence 2 5777765 377677778874331221 133333 777788875 456665553
Done!