BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018329
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/257 (50%), Positives = 172/257 (66%), Gaps = 8/257 (3%)
Query: 36 ADRVRDLPGQPKVEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSS 95
ADR+ LPGQP V+F Y+GY+ + ++LFY EA + PLVLWLNGGPGCSS
Sbjct: 8 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 96 IAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQ 155
+AYGA++ELG F V G+ L N+Y WNK AN+LFL++P GVGFSYTN S D++ GD
Sbjct: 68 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 156 VTANDSYAFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFINLK 215
TA+DSYAFL WF+RFP++K DFYIAGESYAGHYVP+L++L+H K+ INLK
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRS-----KNPVINLK 182
Query: 216 GFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSN--CNDHIRGF 273
GFM+GN +I+D D G ++ W+H I+SD Y+ + + C S I + C+
Sbjct: 183 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVA 241
Query: 274 VEAYAEIDIYSIYSPVC 290
ID+YS+Y+PVC
Sbjct: 242 TAEQGNIDMYSLYTPVC 258
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/257 (50%), Positives = 172/257 (66%), Gaps = 8/257 (3%)
Query: 36 ADRVRDLPGQPKVEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSS 95
ADR+ LPGQP V+F Y+GY+ + ++LFY EA + PLVLWLNGGPGCSS
Sbjct: 3 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 62
Query: 96 IAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQ 155
+AYGA++ELG F V G+ L N+Y WNK AN+LFL++P GVGFSYTN S D++ GD
Sbjct: 63 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 122
Query: 156 VTANDSYAFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFINLK 215
TA+DSYAFL WF+RFP++K DFYIAGESYAGHYVP+L++L+H K+ INLK
Sbjct: 123 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR-----SKNPVINLK 177
Query: 216 GFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSN--CNDHIRGF 273
GFM+GN +I+D D G ++ W+H I+SD Y+ + + C S I + C+
Sbjct: 178 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVA 236
Query: 274 VEAYAEIDIYSIYSPVC 290
ID+YS+Y+PVC
Sbjct: 237 TAEQGNIDMYSLYTPVC 253
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 130/257 (50%), Positives = 172/257 (66%), Gaps = 8/257 (3%)
Query: 36 ADRVRDLPGQPKVEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSS 95
ADR+ LPGQP V+F Y+GY+ + ++LFY EA + PLVLWLNGGPGCSS
Sbjct: 4 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 63
Query: 96 IAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQ 155
+AYGA++ELG F V G+ L N+Y WNK AN+LFL++P GVGFSYTN S D++ GD
Sbjct: 64 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 123
Query: 156 VTANDSYAFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFINLK 215
TA+DSYAFL WF+RFP++K DFYIAGESYAGHYVP+L++L+H K+ INLK
Sbjct: 124 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRS-----KNPVINLK 178
Query: 216 GFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSN--CNDHIRGF 273
GFM+GN +I+D D G ++ W+H I+SD Y+ + + C S I + C+
Sbjct: 179 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVA 237
Query: 274 VEAYAEIDIYSIYSPVC 290
ID+YS+Y+PVC
Sbjct: 238 TAEQGNIDMYSLYTPVC 254
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 265 bits (676), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 130/257 (50%), Positives = 172/257 (66%), Gaps = 8/257 (3%)
Query: 36 ADRVRDLPGQPKVEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSS 95
ADR+ LPGQP V+F Y+GY+ + ++LFY EA + PLVLWLNGGPGCSS
Sbjct: 8 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 96 IAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQ 155
+AYGA++ELG F V G+ L N+Y WNK AN+LFL++P GVGFSYTN S D++ GD
Sbjct: 68 VAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 156 VTANDSYAFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFINLK 215
TA+DSYAFL WF+RFP++K DFYIAGESYAGHYVP+L++L+H K+ INLK
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRS-----KNPVINLK 182
Query: 216 GFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSN--CNDHIRGF 273
GFM+GN +I+D D G ++ W+H I+SD Y+ + + C S I + C+
Sbjct: 183 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVA 241
Query: 274 VEAYAEIDIYSIYSPVC 290
ID+YS+Y+PVC
Sbjct: 242 TAEQGNIDMYSLYTPVC 258
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 161/265 (60%), Gaps = 11/265 (4%)
Query: 30 QTTEADADRVRDLPGQPK-VEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKP-LVLWL 87
Q + + DR+ LPGQP V F Y GYV + N+ +AL+YWF EA + LVLWL
Sbjct: 1 QLQQQEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWL 60
Query: 88 NGGPGCSSIAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSE 147
NGGPGCSSI GA QELG F V NG L N+Y+WNKAAN+LF E+P GVGFSY+N S
Sbjct: 61 NGGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSS 120
Query: 148 DLHKLGDQVTANDSYAFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIHERNIRAG 207
DL +GD A D+Y FL+ WF+RFP++ +FYIAGES GH++PQL+++++ RN
Sbjct: 121 DL-SMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVY-RN--RN 174
Query: 208 KDSFINLKGFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSN-- 265
FIN +G ++ + + ND D G+ + W H +ISD+ K C G S +
Sbjct: 175 NSPFINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCP-GTSFMHPTPE 233
Query: 266 CNDHIRGFVEAYAEIDIYSIYSPVC 290
C + + I+ Y+IY+P C
Sbjct: 234 CTEVWNKALAEQGNINPYTIYTPTC 258
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 134/222 (60%), Gaps = 13/222 (5%)
Query: 35 DADRVRDLPGQPKV-EFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGC 93
D D ++ LPG K F+ Y+GY+K + H L YWF E+QK + P+VLWLNGGPGC
Sbjct: 3 DQDEIQRLPGLAKQPSFRQYSGYLKSSGSKH--LHYWFVESQKDPENSPVVLWLNGGPGC 60
Query: 94 SSIAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLG 153
SS+ G E GPFLV +G L++N YSWN AN+L+LE+P GVGFSY++ + +
Sbjct: 61 SSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATN 117
Query: 154 DQVTANDSYAFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFIN 213
D A ++ L +F+ FP +K++ ++ GESYAG Y+P LA L+ + D +N
Sbjct: 118 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ-------DPSMN 170
Query: 214 LKGFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKEC 255
L+G +GN + + + LV +A+ H ++ ++L+ + C
Sbjct: 171 LQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC 212
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 159/298 (53%), Gaps = 32/298 (10%)
Query: 35 DADRVRDLPGQPKV-EFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGC 93
D D ++ LPG K F+ Y+GY+K + H L YWF E+QK + P+VLWLNGGPGC
Sbjct: 5 DQDEIQRLPGLAKQPSFRQYSGYLKGSGSKH--LHYWFVESQKDPENSPVVLWLNGGPGC 62
Query: 94 SSIAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLG 153
SS+ G E GPFLV +G L++N YSWN AN+L+LE+P GVGFSY++ + +
Sbjct: 63 SSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATN 119
Query: 154 DQVTANDSYAFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFIN 213
D A ++ L +F+ FP +K++ ++ GESYAG Y+P LA L+ + D +N
Sbjct: 120 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ-------DPSMN 172
Query: 214 LKGFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKEC---------DFGQSMIRS 264
L+G +GN + + + LV +A+ H ++ ++L+ + C D +
Sbjct: 173 LQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVT 232
Query: 265 NCNDHIRGFVEAYAEIDIYSIYSPVCLDSLDGKAPPKLMVAPHLLTQHDL---WHRLP 319
N + R + + ++IY++Y+P G P + DL + RLP
Sbjct: 233 NLQEVAR--IVGNSGLNIYNLYAPCA-----GGVPSHFRYEKDTVVVQDLGNIFTRLP 283
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 104/179 (58%), Gaps = 16/179 (8%)
Query: 52 HYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSSIAYGAAQELGPFLVGG 111
Y GY+ + D K F+W FE++ + P++LWLNGGPGCSS+ G ELGP +G
Sbjct: 16 QYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSSIGP 73
Query: 112 NGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQVTA-NDSYAFLIGWFK 170
+ + N YSWN A ++FL+ PV VGFSY+ +S + + V A D Y FL +F
Sbjct: 74 DLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSS----GVSNTVAAGKDVYNFLELFFD 128
Query: 171 RFPNF--KSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFINLKGFMIGNAVINDP 227
+FP + K DF+IAGESYAGHY+P A I + KD NL +IGN + DP
Sbjct: 129 QFPEYVNKGQDFHIAGESYAGHYIPVFA-----SEILSHKDRNFNLTSVLIGNG-LTDP 181
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 102/179 (56%), Gaps = 16/179 (8%)
Query: 52 HYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSSIAYGAAQELGPFLVGG 111
Y GY+ + D K F+W FE++ + P++LWLNGGPGCSS+ G LGP +G
Sbjct: 16 QYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFALGPSSIGP 73
Query: 112 NGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQVTA-NDSYAFLIGWFK 170
+ + N YSWN A ++FL+ PV VGFSY+ +S + + V A D Y FL +F
Sbjct: 74 DLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSS----GVSNTVAAGKDVYNFLELFFD 128
Query: 171 RFPNF--KSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFINLKGFMIGNAVINDP 227
+FP + K DF+IAG SYAGHY+P A I + KD NL +IGN + DP
Sbjct: 129 QFPEYVNKGQDFHIAGASYAGHYIPVFA-----SEILSHKDRNFNLTSVLIGNG-LTDP 181
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 149/327 (45%), Gaps = 38/327 (11%)
Query: 51 KHYAGYVKLRPNDHKA-------LFYWFF--EAQKGVSSKPLVLWLNGGPGCSSIAYGAA 101
+ +AG++ LR D F+W F G +PL++WLNGGPGCSS+ GA
Sbjct: 28 QMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMD-GAL 86
Query: 102 QELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSE----DLHKLGDQVT 157
E GPF V +G +L N+ SW ++LF++ P G GFS N + D +K + +
Sbjct: 87 VESGPFRVNSDG-KLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLE 145
Query: 158 ANDSY--AFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELI--HERNIRAGKDSFIN 213
+ FL +FK FP + ++GESYAG Y+P A I H + + D++ +
Sbjct: 146 DVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTY-D 204
Query: 214 LKGFMIGNAVINDPTDTKGLVDYAWSHAII--SDKLYKDISKECDFGQSMIRSNCNDHIR 271
LK +IGN I+ T + + +A +I S+ +K ++ + Q++I S D
Sbjct: 205 LKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENCQNLINSASTDEAA 264
Query: 272 GFVEAYAEIDIYSIYSPVCLDSLDGKAPPKLMVAPHLLTQHDLWHRLPSGYDPCAED--- 328
F E + + S S G A L ++ L Y C +
Sbjct: 265 HFSYQECENILNLLLSYTRESSQKGTA--------DCLNMYNF--NLKDSYPSCGMNWPK 314
Query: 329 ---YVMKFFNREDVQRALHANITKLSY 352
+V KFF+ V +LH + K+ +
Sbjct: 315 DISFVSKFFSTPGVIDSLHLDSDKIDH 341
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 322 YDPCAEDYVMKFFNREDVQRALHANIT-KLSYPYTTC 357
YDPC E Y ++NR DVQ ALHAN+T ++Y + TC
Sbjct: 4 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATC 40
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 322 YDPCAEDYVMKFFNREDVQRALHANIT-KLSYPYTTC 357
YDPC E Y ++NR DVQ ALHAN+T ++Y + TC
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATC 38
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 322 YDPCAEDYVMKFFNREDVQRALHANIT-KLSYPYTTC 357
YDPC E Y ++NR DVQ ALHAN+T ++Y + TC
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATC 38
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 322 YDPCAEDYVMKFFNREDVQRALHANIT-KLSYPYTTC 357
YDPC E Y ++NR DVQ ALHAN+T ++Y + TC
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATC 38
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 322 YDPCAEDYVMKFFNREDVQRALHANITKL-SYPYTTC 357
YDPCA + + N +VQ ALHAN++ + YP+T C
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVC 40
>pdb|2HWK|A Chain A, Crystal Structure Of Venezuelan Equine Encephalitis
Alphavirus Nsp2 Protease Domain
Length = 320
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 80 SKPLVLWLNGGPGCSSIAYGAAQELGPFLVGGNGSRLKFNKYSWNKAA----NMLFLEAP 135
+K L LN G C SI YG A ++G + KF++ K++ +LF
Sbjct: 237 TKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLF---- 292
Query: 136 VGVGFSYTNNSEDLHKLGDQVT 157
V +G+ + + +KL +T
Sbjct: 293 VFIGYDRKARTHNPYKLSSTLT 314
>pdb|2X8X|X Chain X, Structure Of The N-Terminal Domain Of Omp85 From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus
Length = 235
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 191 YVPQLAELIHERNIRAGKD---SFINLKGFMIGNAVINDPTDTKGLVDYAWSHAIISDKL 247
+ PQ+ ++ R ++AG + +F G+++G V D G+V + ++
Sbjct: 99 FAPQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGVVEQVT 158
Query: 248 YKDISKECD 256
Y+ ++KE +
Sbjct: 159 YRFLNKEGE 167
>pdb|2A3N|A Chain A, Crystal Structure Of A Putative
Glucosamine-fructose-6-phosphate Aminotransferase
(stm4540.s) From Salmonella Typhimurium Lt2 At 1.35 A
Resolution
Length = 355
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 191 YVPQLAELIHERNIRAGKDSFI 212
YV Q AELIH+ N R KDS +
Sbjct: 85 YVEQAAELIHKGNKRLNKDSVV 106
>pdb|2W62|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaripentaose
pdb|2W63|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaritriose And Laminaritetraose
Length = 555
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 17/72 (23%)
Query: 176 KSHDFYIAGESYAGHYV---------------PQLAELIHER--NIRAGKDSFINLKGFM 218
KSHD + S G YV P I ER ++ SF NL G+
Sbjct: 113 KSHDICMEALSAEGMYVLLDLSEPDISINRENPSWDVHIFERYKSVIDAMSSFPNLLGYF 172
Query: 219 IGNAVINDPTDT 230
GN V ND T+T
Sbjct: 173 AGNEVTNDHTNT 184
>pdb|2W61|A Chain A, Saccharomyces Cerevisiae Gas2p Apostructure (E176q Mutant)
Length = 555
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 17/72 (23%)
Query: 176 KSHDFYIAGESYAGHYV---------------PQLAELIHER--NIRAGKDSFINLKGFM 218
KSHD + S G YV P I ER ++ SF NL G+
Sbjct: 113 KSHDICMEALSAEGMYVLLDLSEPDISINRENPSWDVHIFERYKSVIDAMSSFPNLLGYF 172
Query: 219 IGNAVINDPTDT 230
GN V ND T+T
Sbjct: 173 AGNQVTNDHTNT 184
>pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant
Length = 480
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 63 DHKALFYWFFEAQKGVSSKP---LVLWLNGGPGCSSIAYGAAQELGPF---LVGGNGSRL 116
DH + W ++G SS+P L ++ GPG S Y Q G L G NG+ +
Sbjct: 401 DHWDVVGW---TREGSSSRPNSGLATIMSNGPGGSKWMYVGRQNAGQTWTDLTGNNGASV 457
Query: 117 KFNKYSWNK 125
N W +
Sbjct: 458 TINGDGWGE 466
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,471,537
Number of Sequences: 62578
Number of extensions: 509442
Number of successful extensions: 1130
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1088
Number of HSP's gapped (non-prelim): 22
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)