BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018330
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RD5|A Chain A, Structural Basis For The Regulation Of N-Acetylglutamate
Kinase By Pii In Arabidopsis Thaliana
pdb|2RD5|B Chain B, Structural Basis For The Regulation Of N-Acetylglutamate
Kinase By Pii In Arabidopsis Thaliana
Length = 298
Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/299 (68%), Positives = 232/299 (77%), Gaps = 6/299 (2%)
Query: 61 TSAATAVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAM-KPNQKDNXXXXXXX 119
T + A + +P ++RV+ILSESLPFIQKFRGKTIVVKYGGAAM P K +
Sbjct: 5 TPPSIATGNAPSP-DYRVEILSESLPFIQKFRGKTIVVKYGGAAMTSPELKSSVVSDLVL 63
Query: 120 XXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNK 179
RP+LVHGGGP+IN +LK+ I FRDGLRVTDA TMEIVSMVLVG+VNK
Sbjct: 64 LACVGL----RPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNK 119
Query: 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPV 239
+LVSLIN AGATAVGLSG DGRL TARP PNS +LGFVGEVARVDP+V+ PLV+ G+IPV
Sbjct: 120 NLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPV 179
Query: 240 IASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKG 299
IASVAAD+ GQ+YNINADTV TDVAGILEN+EDP SL+KEIDIKG
Sbjct: 180 IASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIKG 239
Query: 300 VKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
VKKMIEDGKV GGMIPKV CCIRSLAQGV+TASIIDGR +HSLL EI++D GAGTMITG
Sbjct: 240 VKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298
>pdb|2JJ4|A Chain A, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2JJ4|B Chain B, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2JJ4|C Chain C, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2V5H|A Chain A, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|B Chain B, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|C Chain C, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|D Chain D, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|E Chain E, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|F Chain F, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
Length = 321
Score = 313 bits (803), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 164/282 (58%), Positives = 196/282 (69%), Gaps = 4/282 (1%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHG 136
RV ILSE+LP++Q+F G+T+VVKYGGAAMK ++ RPV+VHG
Sbjct: 33 RVRILSEALPYLQQFAGRTVVVKYGGAAMK---QEELKEAVMRDIVFLACVGMRPVVVHG 89
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GGPEIN WL R GIEP F +GLRVTDA+TME+V MVLVGRVNK +VS IN G AVG
Sbjct: 90 GGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFC 149
Query: 197 GMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G DGRL ARP + + +GFVGEV V+ VIEPL+ G+IPVI+SVAADE GQS+NINA
Sbjct: 150 GTDGRLVLARPH-DQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINA 208
Query: 257 DTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
DTV TD GILE+ + P SL+ ++I +++I G VGGGMIPK
Sbjct: 209 DTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPK 268
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
V+CCIRSLAQGVR A IIDGR+ H+LLLEI TDAG GTMI G
Sbjct: 269 VDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVG 310
>pdb|2BTY|A Chain A, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|B Chain B, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|C Chain C, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
Length = 282
Score = 221 bits (562), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 117/279 (41%), Positives = 168/279 (60%), Gaps = 7/279 (2%)
Query: 78 VDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGG 137
V++L E+LP+I++F GKT V+K+GG+AMK ++N +P++VHGG
Sbjct: 6 VNVLLEALPYIKEFYGKTFVIKFGGSAMK---QENAKKAFIQDIILLKYTGIKPIIVHGG 62
Query: 138 GPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSG 197
GP I+ +K GIEPVF++G RVTD TMEIV MVLVG++NK +V +N G AVG+ G
Sbjct: 63 GPAISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICG 122
Query: 198 MDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINAD 257
D +L A +G+VG+V +V+P ++ L+ + +IPVIA V E G SYNINAD
Sbjct: 123 KDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINAD 182
Query: 258 TVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKV 317
T TDV G+L++ + L+ + +++I DG V GGMIPKV
Sbjct: 183 TAAAEIAKSLMAEKLILLTDVDGVLKDGK----LISTLTPDEAEELIRDGTVTGGMIPKV 238
Query: 318 NCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
C + ++ GV II+G +EH++LLEI + G GTMI
Sbjct: 239 ECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMI 277
>pdb|2BUF|A Chain A, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|B Chain B, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|C Chain C, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|D Chain D, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|E Chain E, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|F Chain F, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|G Chain G, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|H Chain H, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|I Chain I, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|J Chain J, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|K Chain K, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|L Chain L, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
Length = 300
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 171/289 (59%), Gaps = 17/289 (5%)
Query: 80 ILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGP 139
+LSE+LP+I++F GKT+V+KYGG AM + + PV+VHGGGP
Sbjct: 13 VLSEALPYIRRFVGKTLVIKYGGNAM---ESEELKAGFARDVVLMKAVGINPVVVHGGGP 69
Query: 140 EINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMD 199
+I LKR IE F DG+RVTDA TM++V MVL G+VNK +V+LIN+ G +A+GL+G D
Sbjct: 70 QIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKD 129
Query: 200 GRLFTA------RPSPNSDK-----LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEF 248
L A R +P K +G VGEV V+ ++ LV IPVIA +
Sbjct: 130 AELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSN 189
Query: 249 GQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDGK 308
G+SYNINAD V T++AG+++ + ++ + + V ++I DG
Sbjct: 190 GESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLT---GLSTEQVNELIADGT 246
Query: 309 VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357
+ GGM+PK+ C + ++ GV +A IIDGRV +++LLEI TD+G GT+I+
Sbjct: 247 IYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLIS 295
>pdb|2AP9|A Chain A, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|B Chain B, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|C Chain C, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|D Chain D, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|E Chain E, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|F Chain F, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
Length = 299
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 161/289 (55%), Gaps = 10/289 (3%)
Query: 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPV 132
P + +L+E+LP++++ GK +VVKYGG A D PV
Sbjct: 5 PTHIKAQVLAEALPWLKQLHGKVVVVKYGGNAXT---DDTLRRAFAADXAFLRNCGIHPV 61
Query: 133 LVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATA 192
+VHGGGP+I L+R GIE F+ G RVT +++ VL G+V + LV+LIN G A
Sbjct: 62 VVHGGGPQITAXLRRLGIEGDFKGGFRVTTPEVLDVARXVLFGQVGRELVNLINAHGPYA 121
Query: 193 VGLSGMDGRLFTA-RPSPNSD----KLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247
VG++G D +LFTA R S D +G VG+V +V+ LV +G IPV++++A D
Sbjct: 122 VGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAXLDLVAAGRIPVVSTLAPDA 181
Query: 248 FGQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307
G +NINADT TD+ G+ D SLV EID + +++
Sbjct: 182 DGVVHNINADTAAAAVAEALGAEKLLXLTDIDGLYTRWPDRDSLVSEIDTGTLAQLLPTL 241
Query: 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
++ G +PKV C+R++ GV +A IIDGRV H +L+E+ TDAG GT +
Sbjct: 242 EL--GXVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKV 288
>pdb|3U6U|A Chain A, Crystal Structure Of The Putative Acetylglutamate Kinase
From Thermus Thermophilus
pdb|3U6U|C Chain C, Crystal Structure Of The Putative Acetylglutamate Kinase
From Thermus Thermophilus
Length = 269
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 112/240 (46%), Gaps = 18/240 (7%)
Query: 132 VLVHGGGPEINFWLKRFGIEPVFRDG-----LRVTDANTMEIVSMVLVGRVNKSLVSLIN 186
+LVHGG E N + G P F R+TD T+EI MV G VNK LV L+
Sbjct: 32 LLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKTLEIFEMVYCGLVNKRLVELLQ 91
Query: 187 KAGATAVGLSGMDGRLFTARPSP----------NSDKLGFVGEVARVDPTVIEPLVNSGH 236
K GA A+GLSG+DGRLF R + + G V V+ +++ L+ +G+
Sbjct: 92 KEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQAGY 151
Query: 237 IPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEID 296
+PV+ A ++ N + D + ++V G+L D SLV+EI
Sbjct: 152 LPVLTPPALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLARYPDEASLVREIP 211
Query: 297 IKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
++ ++ G M KV + ++ GV+ DGRVE+ + + +G GT++
Sbjct: 212 VERIEDPEYLALAQGRMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRAL---SGEGTVV 268
>pdb|3L86|A Chain A, The Crystal Structure Of Smu.665 From Streptococcus Mutans
Ua159
Length = 279
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 132 VLVHGGGPEINFWLKRFGIEPVFR-DGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGA 190
V+VHGGG IN ++ + PV + +GLRVT + M +VS L+ V K+L + +AG
Sbjct: 70 VIVHGGGFAINKLMEENQV-PVKKINGLRVTSKDDMVLVSHALLDLVGKNLQEKLRQAGV 128
Query: 191 TAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQ 250
+ L D + A + D G+VG+V ++ VIE + + IP++AS+ + G
Sbjct: 129 SCQQLKS-DIKHVVAADYLDKDTYGYVGDVTHINKRVIEEFLENRQIPILASLGYSKEGD 187
Query: 251 SYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVG 310
NINAD + T+V G+LEN +++++I V++ I+ +
Sbjct: 188 MLNINADYLATAVAVALAADKLILMTNVKGVLENG----AVLEKITSHQVQEKIDTAVIT 243
Query: 311 GGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLL 343
GMIPK+ +++A GV I D + +L+
Sbjct: 244 AGMIPKIESAAKTVAAGVGQVLIGDNLLTGTLI 276
>pdb|1GS5|A Chain A, N-Acetyl-L-Glutamate Kinase From Escherichia Coli
Complexed With Its Substrate N-Acetylglutamate And Its
Substrate Analog Amppnp
pdb|1OH9|A Chain A, Acetylglutamate Kinase From Escherichia Coli Complexed
With Mgadp, N-Acetyl-L-Glutamate And The
Transition-State Mimic Alf4-
pdb|1OHA|A Chain A, Acetylglutamate Kinase From Escherichia Coli Complexed
With Mgadp And N-Acetyl-L-Glutamate
pdb|1OHB|A Chain A, Acetylglutamate Kinase From Escherichia Coli Complexed
With Adp And Sulphate
pdb|2WXB|A Chain A, Acetylglutamate Kinase From Escherichia Coli Free Of
Substrates
pdb|2WXB|B Chain B, Acetylglutamate Kinase From Escherichia Coli Free Of
Substrates
pdb|2X2W|A Chain A, Acetylglutamate Kinase From Escherichia Coli Bound To N-
Acetyl-L-Glutamyl-5-Phosphate
pdb|2X2W|B Chain B, Acetylglutamate Kinase From Escherichia Coli Bound To N-
Acetyl-L-Glutamyl-5-Phosphate
Length = 258
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 109/207 (52%), Gaps = 10/207 (4%)
Query: 130 RP-VLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKA 188
RP V+VHGGG ++ +K + ++GLRVT A+ ++I++ L G NK+L++ K
Sbjct: 36 RPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKH 95
Query: 189 GATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEF 248
AVGL DG + + + ++LG VG P +I L+ +G++PV++S+ +
Sbjct: 96 QIAAVGLFLGDGD--SVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDE 153
Query: 249 GQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDGK 308
GQ N+NAD +DV+GIL+ + ++ E+ +++IE G
Sbjct: 154 GQLMNVNADQA-ATALAATLGADLILLSDVSGILDGKGQRIA---EMTAAKAEQLIEQGI 209
Query: 309 VGGGMIPKVNCCI---RSLAQGVRTAS 332
+ GMI KVN + R+L + V AS
Sbjct: 210 ITDGMIVKVNAALDAARTLGRPVDIAS 236
>pdb|1GSJ|A Chain A, Selenomethionine Substituted N-Acetyl-L-Glutamate Kinase
From Escherichia Coli Complexed With Its Substrate N-
Acetyl-L-Glutamate And Its Substrate Analog Amppnp
Length = 258
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 10/207 (4%)
Query: 130 RP-VLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKA 188
RP V+VHGGG ++ K + ++GLRVT A+ ++I++ L G NK+L++ K
Sbjct: 36 RPLVIVHGGGCVVDELXKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKH 95
Query: 189 GATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEF 248
AVGL DG + + + ++LG VG P +I L+ +G++PV++S+ +
Sbjct: 96 QIAAVGLFLGDGD--SVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDE 153
Query: 249 GQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDGK 308
GQ N+NAD +DV+GIL+ + ++ E +++IE G
Sbjct: 154 GQLXNVNADQA-ATALAATLGADLILLSDVSGILDGKGQRIA---EXTAAKAEQLIEQGI 209
Query: 309 VGGGMIPKVNCCI---RSLAQGVRTAS 332
+ G I KVN + R+L + V AS
Sbjct: 210 ITDGXIVKVNAALDAARTLGRPVDIAS 236
>pdb|3T7B|A Chain A, Crystal Structure Of N-Acetyl-L-Glutamate Kinase From
Yersinia Pestis
pdb|3T7B|B Chain B, Crystal Structure Of N-Acetyl-L-Glutamate Kinase From
Yersinia Pestis
Length = 260
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 10/207 (4%)
Query: 130 RP-VLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKA 188
RP V+ HGGG ++ KR + V ++GLRVT A+ ++I++ L G NK+L++ K
Sbjct: 38 RPLVIXHGGGCLVDELXKRLALPVVKKNGLRVTPADQIDIITGALAGTANKTLLAWAVKH 97
Query: 189 GATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEF 248
AVGL DG T + +LG VG+ +++ L+ +G+ P+I+S+
Sbjct: 98 QINAVGLCLADGNTVTV--TLLDAELGHVGKAQPGSAALVQTLLAAGYXPIISSIGITVE 155
Query: 249 GQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDGK 308
GQ N+NAD +DV+GIL+ + ++ E + +++I G
Sbjct: 156 GQLXNVNADQA-ATALAATLGADLILLSDVSGILDGKGQRIA---EXTAQKAEQLIAQGI 211
Query: 309 VGGGMIPKVNCCI---RSLAQGVRTAS 332
+ G + KVN + RSL + V AS
Sbjct: 212 ITDGXVVKVNAALDAARSLGRPVDIAS 238
>pdb|3ZZF|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZG|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZH|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
Length = 307
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 15/230 (6%)
Query: 131 PVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGA 190
P+++HG GP++N L+ GIEP + DG+R+TD +TM +V + + N LV+ + + G
Sbjct: 81 PIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQ-NLKLVTALEQLGV 139
Query: 191 TAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQ 250
A ++ +FTA + DK VG + V IE + +G +P++ S+A GQ
Sbjct: 140 RARPIT---SGVFTA-DYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQ 195
Query: 251 SYNINADTVXXXXXXXXXXXXXXXXTDVAGILE----NREDPMSLVKEIDIKGVKKMIED 306
N+NAD + GI+ + ++L +E D +++
Sbjct: 196 MLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYD-----DLMKQ 250
Query: 307 GKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
V G K+ L R++S+ V+ L E+ TD+GAGTMI
Sbjct: 251 SWVKYGTKLKIREIKELLDYLPRSSSVAIINVQ-DLQKELFTDSGAGTMI 299
>pdb|3ZZI|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|4AB7|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
Length = 464
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 15/230 (6%)
Query: 131 PVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGA 190
P+++HG GP++N L+ GIEP + DG+R+TD +TM +V + + N LV+ + + G
Sbjct: 81 PIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQ-NLKLVTALEQLGV 139
Query: 191 TAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQ 250
A ++ +FTA + DK VG + V IE + +G +P++ S+A GQ
Sbjct: 140 RARPIT---SGVFTA-DYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQ 195
Query: 251 SYNINADTVXXXXXXXXXXXXXXXXTDVAGILE----NREDPMSLVKEIDIKGVKKMIED 306
N+NAD + GI+ + ++L +E D +++
Sbjct: 196 MLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKISMINLDEEYD-----DLMKQ 250
Query: 307 GKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
V G K+ L R++S+ V+ L E+ TD+GAGTMI
Sbjct: 251 SWVKYGTKLKIREIKELLDYLPRSSSVAIINVQ-DLQKELFTDSGAGTMI 299
>pdb|3S6K|A Chain A, Crystal Structure Of Xcnags
Length = 467
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 101/229 (44%), Gaps = 14/229 (6%)
Query: 131 PVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGA 190
P+++HG GP+++ L GIE +GLRVT + + IV V N LV + + GA
Sbjct: 94 PIVLHGAGPQLDAELSAAGIEKQTVNGLRVTSPHALAIVRKVFQAS-NLKLVEALQQNGA 152
Query: 191 TAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQ 250
A ++G +F A N D G VGEV V+ IE + +G IPVI S+ GQ
Sbjct: 153 RATSITGG---VFEAE-YLNRDTYGLVGEVKAVNLAPIEASLQAGSIPVITSLGETPSGQ 208
Query: 251 SYNINADTVXXXXXXXXXXXXXXXXTDVAGILENRE---DPMSLVKEIDIKGVKKMIEDG 307
N+NAD T G+L+ D ++L E D + +
Sbjct: 209 ILNVNADFAANELVQELQPYKIIFLTGTGGLLDAEGKLIDSINLSTEYD-----HLXQQP 263
Query: 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
+ GG K+ I+ L + S + L E+ T G+GT++
Sbjct: 264 WINGGXRVKIE-QIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLV 311
>pdb|3S6H|A Chain A, Crystal Structure Of Native MmnagsK
pdb|3S6H|B Chain B, Crystal Structure Of Native MmnagsK
pdb|3S6H|X Chain X, Crystal Structure Of Native MmnagsK
pdb|3S6H|Y Chain Y, Crystal Structure Of Native MmnagsK
Length = 460
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 97/226 (42%), Gaps = 8/226 (3%)
Query: 131 PVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGA 190
PV+VHGGGP+++ L+ I DGLRVT + I+ L + N +LV I AG
Sbjct: 91 PVVVHGGGPQLDAALEAADIPTERVDGLRVTRDEAIPIIRDTLT-QANLALVDAIRDAGG 149
Query: 191 TAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQ 250
A + R ++DKLG VGE + ++ +G ++A + G
Sbjct: 150 RAAAVP----RGVFEADIVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACLGETPDGT 205
Query: 251 SYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVG 310
NINAD T G+L+ D +S + G +++ V
Sbjct: 206 LVNINADVAVRALVHALQPYKVVFLTGTGGLLDEDGDILSSINLATDFG--DLMQADWVN 263
Query: 311 GGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
GGM K+ R L ++S+ R L E+ T AG+GT+I
Sbjct: 264 GGMRLKLEEIKRLLDDLPLSSSVSITR-PSELARELFTHAGSGTLI 308
>pdb|3S7Y|A Chain A, Crystal Structure Of Mmnags In Space Group P3121 At 4.3 A
Resolution
pdb|3S7Y|X Chain X, Crystal Structure Of Mmnags In Space Group P3121 At 4.3 A
Resolution
Length = 461
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 97/226 (42%), Gaps = 8/226 (3%)
Query: 131 PVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGA 190
PV+VHGGGP+++ L+ I DGLRVT + I+ L + N +LV I AG
Sbjct: 91 PVVVHGGGPQLDAALEAADIPTERVDGLRVTRDEAIPIIRDTLT-QANLALVDAIRDAGG 149
Query: 191 TAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQ 250
A + R ++DKLG VGE + ++ +G ++A + G
Sbjct: 150 RAAAVP----RGVFEADIVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACLGETPDGT 205
Query: 251 SYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVG 310
NINAD T G+L+ D +S + G +++ V
Sbjct: 206 LVNINADVAVRALVHALQPYKVVFLTGTGGLLDEDGDILSSINLATDFG--DLMQADWVN 263
Query: 311 GGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
GGM K+ R L ++S+ R L E+ T AG+GT+I
Sbjct: 264 GGMRLKLEEIKRLLDDLPLSSSVSITR-PSELARELFTHAGSGTLI 308
>pdb|3S6G|A Chain A, Crystal Structures Of Seleno-Substituted Mutant Mmnags In
Space Group P212121
pdb|3S6G|B Chain B, Crystal Structures Of Seleno-Substituted Mutant Mmnags In
Space Group P212121
pdb|3S6G|X Chain X, Crystal Structures Of Seleno-Substituted Mutant Mmnags In
Space Group P212121
pdb|3S6G|Y Chain Y, Crystal Structures Of Seleno-Substituted Mutant Mmnags In
Space Group P212121
Length = 460
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 131 PVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGA 190
PV+VHGGGP+++ L+ I DGLRVT I+ L + N +LV I AG
Sbjct: 91 PVVVHGGGPQLDAALEAADIPTERVDGLRVTRDEAXPIIRDTLT-QANLALVDAIRDAGG 149
Query: 191 TAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQ 250
A + R ++DKLG VGE + ++ +G ++A + G
Sbjct: 150 RAAAVP----RGVFEADIVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACLGETPDGT 205
Query: 251 SYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVG 310
NINAD T G+L+ D +S + G + + V
Sbjct: 206 LVNINADVAVRALVHALQPYKVVFLTGTGGLLDEDGDILSSINLATDFG--DLXQADWVN 263
Query: 311 GGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
GG K+ R L ++S+ R L E+ T AG+GT+I
Sbjct: 264 GGXRLKLEEIKRLLDDLPLSSSVSITR-PSELARELFTHAGSGTLI 308
>pdb|2R8V|A Chain A, Native Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae
pdb|3B8G|A Chain A, Crysta Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
N-Acetyl-Glutamate
pdb|3D2P|A Chain A, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2P|B Chain B, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2M|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-Glutamate
pdb|4I49|A Chain A, Structure Of Ngnags Bound With Bisubstrate Analog Coa-Nag
Length = 456
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 117/289 (40%), Gaps = 22/289 (7%)
Query: 74 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVL 133
A FR E+ P+I++ RG T+V G ++ + R VL
Sbjct: 29 AHFR-----EAAPYIRQMRGTTLVAGIDGRLLEGGTLNK----LAADIGLLSQLGIRLVL 79
Query: 134 VHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM---EIVSMVLVGRVNKSLV-SLINKAG 189
+HG ++ G P + GLRVTD ++ + + + R +L S+ A
Sbjct: 80 IHGAYHFLDRLAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTVRSRFEAALCGSVSGFAR 139
Query: 190 ATAVGLSGMDGRLFTARPSPNSD--KLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247
A +V L + G TARP D + + G + + D + +++G+I + +
Sbjct: 140 APSVPL--VSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVWMPPLGHSY 197
Query: 248 FGQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307
G+++N++ T GI +R D +L + + + + + E
Sbjct: 198 GGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGI--SRPDG-TLAETLSAQEAQSLAEHA 254
Query: 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
+ ++ + +L GV I++G + SLL E+ T G GT I
Sbjct: 255 ASETRRL--ISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSI 301
>pdb|2R98|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase (Selenomet
Substituted) From Neisseria Gonorrhoeae
Length = 456
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 115/289 (39%), Gaps = 22/289 (7%)
Query: 74 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVL 133
A FR E+ P+I++ RG T+V G ++ + R VL
Sbjct: 29 AHFR-----EAAPYIRQXRGTTLVAGIDGRLLEGGTLNK----LAADIGLLSQLGIRLVL 79
Query: 134 VHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM---EIVSMVLVGRVNKSLV-SLINKAG 189
+HG ++ G P + GLRVTD ++ + + + R +L S+ A
Sbjct: 80 IHGAYHFLDRLAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTVRSRFEAALCGSVSGFAR 139
Query: 190 ATAVGLSGMDGRLFTARPSPNSD--KLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247
A +V L + G TARP D + G + + D + +++G+I +
Sbjct: 140 APSVPL--VSGNFLTARPIGVIDGTDXEYAGVIRKTDTAALRFQLDAGNIVWXPPLGHSY 197
Query: 248 FGQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307
G+++N++ T GI +R D +L + + + + + E
Sbjct: 198 GGKTFNLDXVQAAASVAVSLQAEKLVYLTLSDGI--SRPDG-TLAETLSAQEAQSLAEHA 254
Query: 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
+ ++ + +L GV I++G + SLL E+ T G GT I
Sbjct: 255 ASETRRL--ISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSI 301
>pdb|3SC7|X Chain X, First Crystal Structure Of An Endo-Inulinase, From
Aspergillus Ficuum: Structural Analysis And Comparison
With Other Gh32 Enzymes.
pdb|3RWK|X Chain X, First Crystal Structure Of An Endo-Inulinase, From
Aspergillus Ficuum: Structural Analysis And Comparison
With Other Gh32 Enzymes
Length = 516
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 132 VLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM----------EIVSMVLVGRVNKSL 181
VL HGG +++FW I ++ L+ T N + ++ + + G +
Sbjct: 191 VLAHGGQDKLSFWTSADTINWTWQSDLKSTSINGLSSDITGWEVPDMFELPVEGTEETTW 250
Query: 182 VSLINKAGATAVGLSG-------MDGRLFTARP 207
V ++ A + G +G DG+ FTA P
Sbjct: 251 VVMMTPAEGSPAGGNGVLAITGSFDGKSFTADP 283
>pdb|1ZNN|A Chain A, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|B Chain B, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|C Chain C, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|D Chain D, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|E Chain E, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|F Chain F, Structure Of The Synthase Subunit Of Plp Synthase
Length = 325
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 218 GEVARV-DPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G VAR+ DPTVIE ++N+ IPV+A V + ++ + A
Sbjct: 87 GGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEA 126
>pdb|3FEM|A Chain A, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|B Chain B, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|C Chain C, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|D Chain D, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|E Chain E, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|F Chain F, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
Length = 297
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 218 GEVARV-DPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G+V R+ DP +I+ ++NS IPV+A V F ++ I A
Sbjct: 55 GKVCRMSDPKMIKDIMNSVSIPVMAKVRIGHFVEAQIIEA 94
>pdb|3O05|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O05|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O05|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O06|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O06|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O06|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O07|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
pdb|3O07|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
pdb|3O07|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
Length = 291
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 218 GEVARV-DPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G+V R+ DP +I+ ++NS IPV+A V F ++ I A
Sbjct: 49 GKVCRMSDPKMIKDIMNSVSIPVMAKVRIGHFVEAQIIEA 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,194,442
Number of Sequences: 62578
Number of extensions: 290450
Number of successful extensions: 713
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 31
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)