Query 018330
Match_columns 358
No_of_seqs 226 out of 1434
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:06:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0548 ArgB Acetylglutamate k 100.0 9.2E-64 2E-68 465.8 29.8 263 92-358 1-265 (265)
2 CHL00202 argB acetylglutamate 100.0 6E-63 1.3E-67 471.9 32.9 280 74-357 4-283 (284)
3 PLN02512 acetylglutamate kinas 100.0 9E-62 1.9E-66 468.7 35.0 283 73-358 27-309 (309)
4 cd04237 AAK_NAGS-ABP AAK_NAGS- 100.0 3.1E-57 6.7E-62 431.6 30.3 272 76-356 1-280 (280)
5 cd04250 AAK_NAGK-C AAK_NAGK-C: 100.0 7.8E-57 1.7E-61 429.0 29.9 274 80-356 1-279 (279)
6 PRK00942 acetylglutamate kinas 100.0 1.5E-56 3.2E-61 428.0 31.3 279 74-358 4-282 (283)
7 TIGR01890 N-Ac-Glu-synth amino 100.0 1.7E-56 3.6E-61 450.4 30.2 271 77-358 1-279 (429)
8 PLN02825 amino-acid N-acetyltr 100.0 5.9E-56 1.3E-60 450.3 29.6 273 77-358 1-364 (515)
9 PRK05279 N-acetylglutamate syn 100.0 1.8E-54 3.9E-59 437.1 31.1 277 73-358 5-291 (441)
10 cd04252 AAK_NAGK-fArgBP AAK_NA 100.0 1.2E-49 2.6E-54 373.5 27.7 244 97-356 2-248 (248)
11 cd04238 AAK_NAGK-like AAK_NAGK 100.0 6.8E-49 1.5E-53 369.9 27.0 255 96-356 1-256 (256)
12 PRK14058 acetylglutamate/acety 100.0 1.4E-48 3E-53 370.2 27.8 252 95-358 1-267 (268)
13 cd04236 AAK_NAGS-Urea AAK_NAGS 100.0 5.7E-49 1.2E-53 371.2 24.7 245 81-356 16-271 (271)
14 cd04249 AAK_NAGK-NC AAK_NAGK-N 100.0 4.7E-48 1E-52 363.5 27.1 251 96-356 1-252 (252)
15 cd04251 AAK_NAGK-UC AAK_NAGK-U 100.0 5.4E-47 1.2E-51 357.2 25.5 242 96-356 1-257 (257)
16 TIGR00761 argB acetylglutamate 100.0 1E-46 2.2E-51 349.9 25.6 231 95-333 1-231 (231)
17 PRK04531 acetylglutamate kinas 100.0 9.2E-44 2E-48 352.6 25.5 225 81-358 20-249 (398)
18 PRK12352 putative carbamate ki 100.0 4.7E-43 1E-47 337.3 28.3 260 93-358 2-315 (316)
19 cd04241 AAK_FomA-like AAK_FomA 100.0 4.6E-43 1E-47 329.4 24.1 241 95-356 1-252 (252)
20 cd02115 AAK Amino Acid Kinases 100.0 2.6E-38 5.7E-43 295.1 20.9 242 97-356 1-248 (248)
21 PF00696 AA_kinase: Amino acid 100.0 6.6E-37 1.4E-41 284.7 21.6 229 94-335 1-242 (242)
22 KOG2436 Acetylglutamate kinase 100.0 5.7E-36 1.2E-40 294.8 20.2 330 12-358 19-359 (520)
23 cd04256 AAK_P5CS_ProBA AAK_P5C 100.0 6.7E-35 1.4E-39 278.3 24.0 250 93-357 8-284 (284)
24 COG1608 Predicted archaeal kin 100.0 2.5E-35 5.4E-40 267.9 19.9 238 95-358 2-252 (252)
25 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 2.9E-34 6.3E-39 269.8 22.7 239 95-357 1-251 (251)
26 PRK05429 gamma-glutamyl kinase 100.0 7.4E-34 1.6E-38 280.8 25.6 241 94-358 9-261 (372)
27 PRK13402 gamma-glutamyl kinase 100.0 3.1E-34 6.8E-39 282.0 22.7 239 94-358 6-257 (368)
28 COG0263 ProB Glutamate 5-kinas 100.0 5.8E-34 1.3E-38 271.7 23.0 241 94-358 7-259 (369)
29 PRK12314 gamma-glutamyl kinase 100.0 8E-34 1.7E-38 268.8 23.7 241 93-358 9-264 (266)
30 PTZ00489 glutamate 5-kinase; P 100.0 2.1E-33 4.5E-38 265.1 24.1 239 93-358 8-259 (264)
31 PRK12686 carbamate kinase; Rev 100.0 1.7E-34 3.6E-39 276.6 16.6 246 93-357 2-311 (312)
32 PRK12353 putative amino acid k 100.0 4.5E-33 9.7E-38 269.1 25.6 259 92-358 1-314 (314)
33 cd04246 AAK_AK-DapG-like AAK_A 100.0 5.4E-33 1.2E-37 259.3 25.0 229 96-357 2-239 (239)
34 cd04261 AAK_AKii-LysC-BS AAK_A 100.0 9.5E-33 2.1E-37 257.7 24.8 230 95-357 1-239 (239)
35 TIGR01027 proB glutamate 5-kin 100.0 5E-33 1.1E-37 274.0 23.3 240 94-358 1-253 (363)
36 cd04260 AAK_AKi-DapG-BS AAK_AK 100.0 5.8E-32 1.3E-36 253.2 24.6 230 95-357 1-244 (244)
37 TIGR00746 arcC carbamate kinas 100.0 6.4E-32 1.4E-36 259.7 24.8 252 94-357 1-309 (310)
38 PRK12454 carbamate kinase-like 100.0 2.3E-31 5.1E-36 254.6 26.7 246 94-358 3-313 (313)
39 cd04235 AAK_CK AAK_CK: Carbama 100.0 3.1E-30 6.7E-35 247.1 26.2 243 95-357 1-308 (308)
40 PRK00358 pyrH uridylate kinase 100.0 1.9E-29 4E-34 234.3 25.0 222 94-357 1-231 (231)
41 cd04234 AAK_AK AAK_AK: Amino A 100.0 4.6E-30 1E-34 237.9 20.8 217 95-357 1-227 (227)
42 KOG1154 Gamma-glutamyl kinase 100.0 1.7E-30 3.8E-35 234.3 15.6 247 94-357 10-274 (285)
43 PRK08210 aspartate kinase I; R 100.0 1.3E-29 2.8E-34 253.4 22.8 223 94-338 2-238 (403)
44 cd04255 AAK_UMPK-MosAB AAK_UMP 100.0 4.6E-29 9.9E-34 235.5 24.6 217 94-357 31-262 (262)
45 PRK12354 carbamate kinase; Rev 100.0 3.8E-29 8.2E-34 238.8 24.1 243 94-358 1-300 (307)
46 cd04239 AAK_UMPK-like AAK_UMPK 100.0 5.5E-29 1.2E-33 230.9 23.3 221 95-357 1-229 (229)
47 cd04254 AAK_UMPK-PyrH-Ec UMP k 100.0 4.3E-29 9.3E-34 232.0 22.5 222 94-357 1-231 (231)
48 TIGR01092 P5CS delta l-pyrroli 100.0 2.5E-29 5.5E-34 266.8 23.3 251 93-358 7-275 (715)
49 PRK06635 aspartate kinase; Rev 100.0 1.4E-28 3E-33 246.0 24.9 222 94-338 2-233 (404)
50 PRK08841 aspartate kinase; Val 100.0 2.5E-28 5.4E-33 242.8 25.9 222 94-338 2-233 (392)
51 PRK14558 pyrH uridylate kinase 100.0 3.9E-28 8.4E-33 225.6 24.7 222 94-358 1-230 (231)
52 TIGR00656 asp_kin_monofn aspar 100.0 1.8E-28 3.9E-33 245.0 24.1 225 94-339 1-235 (401)
53 PRK09411 carbamate kinase; Rev 100.0 2.6E-28 5.6E-33 231.4 22.8 237 94-357 2-296 (297)
54 PLN02418 delta-1-pyrroline-5-c 100.0 4.9E-28 1.1E-32 256.7 24.0 251 93-358 15-283 (718)
55 cd04253 AAK_UMPK-PyrH-Pf AAK_U 100.0 2.9E-27 6.3E-32 218.3 24.1 213 95-357 1-221 (221)
56 TIGR02075 pyrH_bact uridylate 100.0 9.2E-27 2E-31 216.7 25.9 222 94-357 2-233 (233)
57 PRK07431 aspartate kinase; Pro 100.0 4.3E-27 9.2E-32 245.6 25.0 220 94-337 2-234 (587)
58 TIGR02076 pyrH_arch uridylate 99.9 4.6E-26 1E-30 210.2 24.1 212 96-357 1-221 (221)
59 TIGR00657 asp_kinases aspartat 99.9 8.5E-26 1.8E-30 228.4 20.0 231 95-339 2-274 (441)
60 COG0549 ArcC Carbamate kinase 99.9 1.4E-24 3.1E-29 201.7 24.8 249 94-358 1-312 (312)
61 PRK14556 pyrH uridylate kinase 99.9 3.3E-24 7.1E-29 199.8 24.0 224 94-357 16-247 (249)
62 PRK14557 pyrH uridylate kinase 99.9 1.1E-23 2.3E-28 197.5 26.4 223 94-358 5-238 (247)
63 cd04244 AAK_AK-LysC-like AAK_A 99.9 4.1E-24 9E-29 205.5 17.1 240 95-357 1-298 (298)
64 COG0528 PyrH Uridylate kinase 99.9 1.1E-22 2.4E-27 185.4 23.2 224 92-358 4-238 (238)
65 cd04240 AAK_UC AAK_UC: Unchara 99.9 2.1E-23 4.5E-28 190.3 17.8 195 97-356 1-203 (203)
66 COG0527 LysC Aspartokinases [A 99.9 4.2E-22 9E-27 200.5 22.0 237 95-358 3-289 (447)
67 PRK08373 aspartate kinase; Val 99.9 6.9E-22 1.5E-26 192.6 21.4 236 92-357 2-278 (341)
68 PRK06291 aspartate kinase; Pro 99.9 7E-22 1.5E-26 201.1 21.8 229 95-339 2-294 (465)
69 cd04259 AAK_AK-DapDC AAK_AK-Da 99.9 3.1E-21 6.6E-26 185.2 19.2 239 96-357 2-295 (295)
70 cd04243 AAK_AK-HSDH-like AAK_A 99.8 7.5E-20 1.6E-24 175.5 20.0 155 180-357 130-293 (293)
71 cd04257 AAK_AK-HSDH AAK_AK-HSD 99.8 1E-19 2.2E-24 174.7 19.7 152 180-357 131-294 (294)
72 cd04245 AAK_AKiii-YclM-BS AAK_ 99.8 5.1E-19 1.1E-23 169.2 22.9 161 175-357 119-288 (288)
73 TIGR02078 AspKin_pair Pyrococc 99.8 1.6E-19 3.4E-24 175.2 19.0 221 95-338 1-261 (327)
74 PRK09084 aspartate kinase III; 99.8 3E-18 6.5E-23 173.6 21.5 234 95-357 1-288 (448)
75 PRK05925 aspartate kinase; Pro 99.8 2.2E-18 4.8E-23 173.7 18.5 153 180-357 116-279 (440)
76 PRK09034 aspartate kinase; Rev 99.8 9.2E-18 2E-22 170.4 22.0 153 175-339 119-280 (454)
77 cd04258 AAK_AKiii-LysC-EC AAK_ 99.8 8.9E-18 1.9E-22 160.9 20.4 154 180-357 127-292 (292)
78 PLN02551 aspartokinase 99.8 7.6E-18 1.6E-22 172.9 19.8 236 93-357 51-347 (521)
79 PRK08961 bifunctional aspartat 99.8 5.5E-18 1.2E-22 184.0 16.5 235 94-339 8-296 (861)
80 cd04247 AAK_AK-Hom3 AAK_AK-Hom 99.8 3.9E-17 8.3E-22 157.3 18.4 159 180-358 139-305 (306)
81 PRK09436 thrA bifunctional asp 99.7 1.1E-16 2.3E-21 172.7 20.8 155 180-357 133-296 (819)
82 PRK09466 metL bifunctional asp 99.7 3.6E-16 7.7E-21 167.9 19.7 154 180-357 136-299 (810)
83 COG2054 Uncharacterized archae 99.6 1.3E-13 2.9E-18 120.8 16.4 117 232-358 90-210 (212)
84 PRK09181 aspartate kinase; Val 99.5 5.7E-13 1.2E-17 135.7 18.6 145 181-357 154-310 (475)
85 cd04248 AAK_AK-Ectoine AAK_AK- 99.5 1.2E-12 2.6E-17 125.2 19.2 145 181-357 148-304 (304)
86 KOG0456 Aspartate kinase [Amin 99.1 1.1E-09 2.3E-14 106.3 13.6 110 234-358 258-375 (559)
87 COG5630 ARG2 Acetylglutamate s 86.5 0.41 8.8E-06 47.3 2.0 144 82-243 125-272 (495)
88 COG1778 Low specificity phosph 78.6 2.2 4.8E-05 37.5 3.2 55 274-342 11-65 (170)
89 PF10686 DUF2493: Protein of u 71.8 13 0.00028 28.1 5.6 45 95-145 4-49 (71)
90 PHA03398 viral phosphatase sup 69.7 15 0.00032 35.7 6.8 61 94-154 129-191 (303)
91 TIGR01684 viral_ppase viral ph 69.0 16 0.00034 35.5 6.7 61 94-154 127-189 (301)
92 PF03102 NeuB: NeuB family; I 61.1 1.5E+02 0.0032 27.9 12.1 71 221-305 157-227 (241)
93 PF11814 DUF3335: Peptidase_C3 58.9 50 0.0011 30.3 7.7 65 178-287 98-166 (207)
94 cd04743 NPD_PKS 2-Nitropropane 53.6 87 0.0019 30.7 9.0 94 78-199 39-133 (320)
95 TIGR01689 EcbF-BcbF capsule bi 50.5 53 0.0012 27.6 6.1 45 94-138 2-50 (126)
96 TIGR03849 arch_ComA phosphosul 50.5 2E+02 0.0044 27.0 10.5 27 73-106 10-36 (237)
97 PF02679 ComA: (2R)-phospho-3- 49.3 67 0.0015 30.3 7.2 205 73-348 23-238 (244)
98 PTZ00063 histone deacetylase; 45.5 66 0.0014 33.0 7.0 69 73-141 230-302 (436)
99 PF00850 Hist_deacetyl: Histon 44.0 65 0.0014 31.2 6.5 68 73-140 220-295 (311)
100 PLN02645 phosphoglycolate phos 42.9 68 0.0015 30.9 6.4 60 87-151 24-87 (311)
101 cd07041 STAS_RsbR_RsbS_like Su 38.6 1.9E+02 0.0042 22.6 9.1 72 77-152 24-96 (109)
102 TIGR02726 phenyl_P_delta pheny 36.8 91 0.002 27.4 5.7 65 273-356 9-77 (169)
103 KOG0460 Mitochondrial translat 35.9 1.5E+02 0.0033 29.7 7.4 92 130-239 144-246 (449)
104 PRK14094 psbM photosystem II r 35.8 21 0.00045 24.8 1.1 19 15-33 31-49 (50)
105 PRK10834 vancomycin high tempe 35.7 3.8E+02 0.0082 25.2 11.5 102 95-196 46-168 (239)
106 COG2247 LytB Putative cell wal 34.9 2.6E+02 0.0057 27.5 8.8 42 113-157 63-108 (337)
107 PRK01158 phosphoglycolate phos 34.6 1.1E+02 0.0024 27.4 6.1 57 94-152 4-61 (230)
108 PTZ00346 histone deacetylase; 34.4 1.2E+02 0.0027 30.9 6.9 67 73-139 248-318 (429)
109 PLN02151 trehalose-phosphatase 34.2 2E+02 0.0043 28.7 8.2 67 259-348 86-154 (354)
110 COG1634 Uncharacterized Rossma 34.1 2.1E+02 0.0045 26.8 7.7 22 254-276 158-179 (232)
111 TIGR03151 enACPred_II putative 34.1 3.3E+02 0.0073 26.3 9.7 144 78-276 47-191 (307)
112 KOG1780 Small Nuclear ribonucl 33.5 31 0.00067 26.3 1.9 23 84-106 5-27 (77)
113 COG0329 DapA Dihydrodipicolina 33.4 1.1E+02 0.0023 29.6 6.1 143 179-341 28-195 (299)
114 TIGR01668 YqeG_hyp_ppase HAD s 33.0 1.7E+02 0.0036 25.4 6.9 50 88-138 20-69 (170)
115 TIGR01459 HAD-SF-IIA-hyp4 HAD- 33.0 88 0.0019 28.7 5.3 61 87-152 4-67 (242)
116 TIGR01662 HAD-SF-IIIA HAD-supe 32.9 87 0.0019 25.5 4.8 44 95-138 2-51 (132)
117 TIGR00521 coaBC_dfp phosphopan 32.3 76 0.0017 32.0 5.0 64 73-139 165-236 (390)
118 TIGR02463 MPGP_rel mannosyl-3- 32.0 1.2E+02 0.0025 27.2 5.9 54 96-151 2-56 (221)
119 PRK10513 sugar phosphate phosp 31.7 1.1E+02 0.0025 28.2 5.9 56 94-151 4-60 (270)
120 COG0560 SerB Phosphoserine pho 31.4 68 0.0015 29.3 4.2 33 121-153 86-119 (212)
121 PRK00192 mannosyl-3-phosphogly 31.2 1.2E+02 0.0026 28.4 6.0 58 93-152 4-62 (273)
122 TIGR01487 SPP-like sucrose-pho 30.9 1.5E+02 0.0031 26.5 6.3 56 94-151 2-58 (215)
123 PLN03017 trehalose-phosphatase 30.6 2.1E+02 0.0044 28.7 7.6 65 256-342 96-162 (366)
124 PF03851 UvdE: UV-endonuclease 30.4 1.9E+02 0.0041 27.8 7.1 67 76-143 84-159 (275)
125 PRK15126 thiamin pyrimidine py 30.1 1.3E+02 0.0027 28.0 5.9 57 94-152 3-60 (272)
126 PTZ00174 phosphomannomutase; P 29.9 67 0.0014 29.7 3.9 44 94-139 6-49 (247)
127 cd06259 YdcF-like YdcF-like. Y 29.5 2.3E+02 0.005 23.6 7.0 44 96-139 2-45 (150)
128 PF01872 RibD_C: RibD C-termin 29.1 64 0.0014 28.6 3.6 31 117-147 123-153 (200)
129 PRK10976 putative hydrolase; P 29.0 1.4E+02 0.0029 27.6 5.9 57 94-152 3-60 (266)
130 COG0561 Cof Predicted hydrolas 28.8 1.4E+02 0.003 27.6 5.9 57 94-152 4-61 (264)
131 COG1576 Uncharacterized conser 28.3 2.1E+02 0.0046 25.1 6.4 56 83-145 56-113 (155)
132 PLN02580 trehalose-phosphatase 27.6 2.1E+02 0.0046 28.8 7.2 67 260-348 108-175 (384)
133 TIGR01491 HAD-SF-IB-PSPlk HAD- 27.5 1.2E+02 0.0026 26.3 5.0 37 116-152 84-121 (201)
134 PRK10530 pyridoxal phosphate ( 27.4 83 0.0018 29.0 4.2 57 94-152 4-61 (272)
135 PRK12702 mannosyl-3-phosphogly 27.4 1.6E+02 0.0035 28.7 6.1 59 94-154 2-61 (302)
136 KOG1615 Phosphoserine phosphat 26.3 76 0.0016 29.1 3.4 31 122-152 98-129 (227)
137 PRK12595 bifunctional 3-deoxy- 26.1 6.6E+02 0.014 25.0 14.2 72 223-305 274-348 (360)
138 PRK05579 bifunctional phosphop 25.8 1E+02 0.0022 31.2 4.6 62 73-138 169-238 (399)
139 PRK03669 mannosyl-3-phosphogly 25.5 1.6E+02 0.0035 27.4 5.8 56 94-151 8-64 (271)
140 TIGR02461 osmo_MPG_phos mannos 25.4 1.7E+02 0.0037 26.7 5.8 54 96-152 2-56 (225)
141 TIGR03249 KdgD 5-dehydro-4-deo 24.8 3.7E+02 0.0081 25.6 8.2 130 180-338 30-189 (296)
142 TIGR01490 HAD-SF-IB-hyp1 HAD-s 24.7 1.6E+02 0.0035 25.7 5.3 37 116-152 91-128 (202)
143 TIGR02313 HpaI-NOT-DapA 2,4-di 24.5 3.9E+02 0.0084 25.5 8.3 35 234-276 67-103 (294)
144 TIGR01486 HAD-SF-IIB-MPGP mann 23.9 1.6E+02 0.0035 27.1 5.4 54 96-151 2-56 (256)
145 TIGR01457 HAD-SF-IIA-hyp2 HAD- 23.8 1.2E+02 0.0027 28.1 4.5 55 94-151 2-60 (249)
146 cd01427 HAD_like Haloacid deha 23.5 1.6E+02 0.0034 22.9 4.6 37 115-151 27-64 (139)
147 TIGR01458 HAD-SF-IIA-hyp3 HAD- 23.5 1E+02 0.0022 28.8 4.0 58 94-151 2-64 (257)
148 COG1979 Uncharacterized oxidor 23.5 1.6E+02 0.0035 29.3 5.2 49 94-143 30-100 (384)
149 KOG1783 Small nuclear ribonucl 22.9 81 0.0018 24.0 2.4 22 86-107 9-30 (77)
150 TIGR01488 HAD-SF-IB Haloacid D 22.6 1.6E+02 0.0035 24.9 4.8 35 117-151 78-113 (177)
151 COG1366 SpoIIAA Anti-anti-sigm 22.4 4.1E+02 0.0089 21.3 8.6 76 75-154 25-101 (117)
152 PF02254 TrkA_N: TrkA-N domain 21.8 3.9E+02 0.0086 20.9 6.7 42 224-277 30-71 (116)
153 TIGR00099 Cof-subfamily Cof su 21.6 2.4E+02 0.0053 25.7 6.1 54 96-151 2-56 (256)
154 PRK14501 putative bifunctional 21.5 2.6E+02 0.0056 30.4 7.1 69 259-349 480-551 (726)
155 PF11305 DUF3107: Protein of u 21.4 1.2E+02 0.0025 23.3 3.1 26 255-280 21-47 (74)
156 PRK10444 UMP phosphatase; Prov 21.4 1.6E+02 0.0035 27.4 4.8 55 94-151 2-60 (248)
157 PLN02617 imidazole glycerol ph 20.9 6.4E+02 0.014 26.6 9.5 73 255-334 268-354 (538)
158 PLN02424 ketopantoate hydroxym 20.8 8.2E+02 0.018 24.2 13.1 28 257-284 206-245 (332)
159 TIGR01544 HAD-SF-IE haloacid d 20.5 1.8E+02 0.0038 28.0 4.9 35 117-151 126-161 (277)
160 TIGR01647 ATPase-IIIA_H plasma 20.2 2.7E+02 0.0059 30.6 6.9 40 113-152 443-483 (755)
No 1
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.2e-64 Score=465.81 Aligned_cols=263 Identities=56% Similarity=0.910 Sum_probs=254.9
Q ss_pred cCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHH
Q 018330 92 RGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSM 171 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~ 171 (358)
++|++|||+||++|.+ ++++++++++|++|+..|.++||||||||+++.+++++|++++|++|+|+||+++|++++|
T Consensus 1 ~~k~~VIK~GG~~~~~---~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~m 77 (265)
T COG0548 1 RGKTIVIKLGGSAMED---ENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEM 77 (265)
T ss_pred CCceEEEEECceeecC---chHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHH
Confidence 5799999999999999 8888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCC--CCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCC
Q 018330 172 VLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPN--SDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFG 249 (358)
Q Consensus 172 vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~--~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G 249 (358)
++.|++|+.+++.|+++|..+++++|.|+++++|++... +.|+||+|+++++|++.|+.+|++|+|||++|++.|.+|
T Consensus 78 vl~G~vNk~iva~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G 157 (265)
T COG0548 78 VLGGTVNKEIVARLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDG 157 (265)
T ss_pred HHHHHHHHHHHHHHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCC
Confidence 999999999999999999999999999999999999763 357999999999999999999999999999999999999
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCC
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVR 329 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~ 329 (358)
+++|+|+|++|..+|.+|+|+||+|+|||+||+++.++| ++|++++.+|+++++.+++++|||+||+++|.+|++.|++
T Consensus 158 ~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~~-s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~ 236 (265)
T COG0548 158 ETLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGDP-SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVR 236 (265)
T ss_pred cEEeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCCc-eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999998888 9999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 330 TASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 330 ~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+|||+||+.+++|+.|+|+++++||+|.+
T Consensus 237 ~v~ii~g~~~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 237 RVHIISGRVPHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred eEEEecCCCcchHHHHHhcCCCcceEecC
Confidence 99999999999999999999999999974
No 2
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=100.00 E-value=6e-63 Score=471.89 Aligned_cols=280 Identities=59% Similarity=0.963 Sum_probs=267.2
Q ss_pred hhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcc
Q 018330 74 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153 (358)
Q Consensus 74 ~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~ 153 (358)
..+++++|||++|||++||++++|||+||+++.+ +.+...+++||+.|+..|.++|||||||++++.+++++|++++
T Consensus 4 ~~~~~~~~~~~~pyi~~~~~~~~VIk~gG~~~~~---~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~ 80 (284)
T CHL00202 4 NDERVQVLSEALPYIQKFRGRIMVIKYGGAAMKN---LILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPK 80 (284)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEEEChHHhcC---cchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCE
Confidence 3578999999999999999999999999999988 6666789999999999999999999999999999999999999
Q ss_pred ccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh
Q 018330 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN 233 (358)
Q Consensus 154 ~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~ 233 (358)
|.+|+|+|++++|++++|+++|++|+.+++.|+++|++++++++.|++++++++.. ..|++++|++++++.+.|+.+|+
T Consensus 81 ~~~G~rvT~~~~l~~~~~~l~g~ln~~lv~~L~~~Gv~av~l~~~d~~~i~a~~~~-~~d~~~~G~i~~v~~~~i~~ll~ 159 (284)
T CHL00202 81 FWNGIRVTDKVTMEIVEMVLAGKVNKDLVGSINANGGKAVGLCGKDANLIVARASD-KKDLGLVGEIQQVDPQLIDMLLE 159 (284)
T ss_pred eECCcccCCHHHHHHHHHHHhhHHHHHHHHHHHhCCCCeeeeeeccCCEEEEEeCC-CcccccceeEEecCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999854 46899999999999999999999
Q ss_pred CCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCc
Q 018330 234 SGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGM 313 (358)
Q Consensus 234 ~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM 313 (358)
+|.|||+++++.|.+|+.+|+|+|++|+.+|.+|+|++|+|+|||+|||+++.||+++|++++++|+++++..++++|||
T Consensus 160 ~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~~d~~~~i~~i~~~e~~~l~~~g~~tGGM 239 (284)
T CHL00202 160 KNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADINDPNSLISTLNIKEARNLASTGIISGGM 239 (284)
T ss_pred CCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCCCCCCCccccccHHHHHHHHhcCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998766788999999999999998888999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 314 IPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 314 ~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+||++|.++++.|++++||+||+.|++|+.|+|++++.||+|.
T Consensus 240 ~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 240 IPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 99999999999999999999999999998899999999999985
No 3
>PLN02512 acetylglutamate kinase
Probab=100.00 E-value=9e-62 Score=468.66 Aligned_cols=283 Identities=80% Similarity=1.213 Sum_probs=268.9
Q ss_pred ChhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCc
Q 018330 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEP 152 (358)
Q Consensus 73 ~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~ 152 (358)
++..++++||+++|||++||++++||||||+++++ +++...++++|+.|+..|.++|||||||++++++++++|+++
T Consensus 27 ~~~~~~~~~r~~~pyi~~~~~~tiVIKlGGs~i~d---~~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~ 103 (309)
T PLN02512 27 TNLSRVDILSEALPFIQRFRGKTVVVKYGGAAMKD---PELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEP 103 (309)
T ss_pred chHHHHHHHHHHhHHHHHHCCCeEEEEECCeeccC---hhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCC
Confidence 56799999999999999999999999999999999 555567999999888999999999999999999999999999
Q ss_pred cccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHH
Q 018330 153 VFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLV 232 (358)
Q Consensus 153 ~~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL 232 (358)
+|.+|+|+|+.+++++++|+++|++|+.+++.|+++|+++++++|.|++++++++.....|++++|+++.++.+.|+.+|
T Consensus 104 ~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~~L~~~Gv~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~~~i~~lL 183 (309)
T PLN02512 104 QFKNGLRVTDAETMEVVEMVLVGKVNKSLVSLINKAGGTAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVLRPLV 183 (309)
T ss_pred cCCCCCcCCCHHHHHHHHHHHhhHHHHHHHHHHHHcCCCeEEeehhhCCEEEEEEcCcCccccccceeeecCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987645689999999999999999999
Q ss_pred hCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCC
Q 018330 233 NSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGG 312 (358)
Q Consensus 233 ~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGG 312 (358)
+.|.|||++|++.|+.|+.+++|+|++|+++|.+|+|++|+|+|||+|||+++++++++|++|+++|+++++..++++||
T Consensus 184 ~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~~~~~lI~~i~~~e~~~l~~~~~vtGG 263 (309)
T PLN02512 184 DDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKDDPGSLVKELDIKGVRKLIADGKIAGG 263 (309)
T ss_pred hCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCCCCcCCCcccCHHHHHHHHhCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999876567789999999999999888899999
Q ss_pred cHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 313 MIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 313 M~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
|.+||++|.++++.|++++||+||+.|++|+.++|++++.||+|.|
T Consensus 264 M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~ 309 (309)
T PLN02512 264 MIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMITG 309 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEeC
Confidence 9999999999999999989999999999998999999999999986
No 4
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=3.1e-57 Score=431.64 Aligned_cols=272 Identities=33% Similarity=0.572 Sum_probs=254.6
Q ss_pred hhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcccc
Q 018330 76 FRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFR 155 (358)
Q Consensus 76 ~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~ 155 (358)
+|++|||+++||+++||++++|||+||+++.+ +++ .+++++|+.|++.|+++|||||||+++++++.++|++++|.
T Consensus 1 ~~~~~~~~~~~yi~~~~~~~~VIKlGG~ai~~---~~l-~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~ 76 (280)
T cd04237 1 QFVDWFREAAPYINAHRGKTFVIAFGGEAVAH---PNF-DNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYH 76 (280)
T ss_pred ChHHHHHHHhHHHHHhCCCEEEEEEChHHhcC---chH-HHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcccc
Confidence 58999999999999999999999999999998 655 68999999999999999999999999999999999999999
Q ss_pred CCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeE-----eecCCCccEEEeecCC--CCCCCCcccceeecCHHHH
Q 018330 156 DGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAV-----GLSGMDGRLFTARPSP--NSDKLGFVGEVARVDPTVI 228 (358)
Q Consensus 156 ~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av-----~lsg~d~~ll~a~~~~--~~~d~g~~g~v~~i~~~~I 228 (358)
+|+|+|++++|++++|++ |++|..+++.|++ |++++ ++++.+++++.++|.+ ++.||+++|+++.++.+.|
T Consensus 77 ~G~RvT~~~~l~~~~~~~-g~v~~~l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i 154 (280)
T cd04237 77 RGLRITDAAALECVKEAA-GAVRLEIEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAI 154 (280)
T ss_pred CCcCcCCHHHHHHHHHHH-HHHHHHHHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHH
Confidence 999999999999999995 9999999999965 88887 4566688888998864 2468999999999999999
Q ss_pred HHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCC
Q 018330 229 EPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGK 308 (358)
Q Consensus 229 ~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~ 308 (358)
+++|++|+|||+++++.+.+|+.+|+|+|.+|+.||.+|+|++|+|+|||||||++ ++++|++++.+|+++++..+.
T Consensus 155 ~~lL~~g~ipv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~---~~~~i~~i~~~e~~~l~~~~~ 231 (280)
T cd04237 155 RRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD---DGELIRELTAQEAEALLETGA 231 (280)
T ss_pred HHHHHCCCEEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC---CCCccccCCHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999974 478999999999999998877
Q ss_pred C-CCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 309 V-GGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 309 v-tGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
+ +|||++||++|.++++.|++++||+||+.||+|+.|+|+++|.||+|
T Consensus 232 ~~~ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 232 LLTNDTARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 6 99999999999999999999999999999999999999999999986
No 5
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=100.00 E-value=7.8e-57 Score=429.00 Aligned_cols=274 Identities=62% Similarity=0.985 Sum_probs=259.2
Q ss_pred HHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcc
Q 018330 80 ILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLR 159 (358)
Q Consensus 80 ~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~r 159 (358)
+||+|.|||++||++++||||||+++++ +.....++++|+.++..|.++|||||||++++.++++++++.++.+|+|
T Consensus 1 ~~~~~~~yi~~~~~~~~ViKlGGs~i~~---~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r 77 (279)
T cd04250 1 VLIEALPYIQKFRGKTVVIKYGGNAMKD---EELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLR 77 (279)
T ss_pred ChhhhhHHHHHHcCCEEEEEEChHHhcC---ccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCee
Confidence 3899999999999999999999999999 4445678999998988999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCC-----CCCCCCcccceeecCHHHHHHHHhC
Q 018330 160 VTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSP-----NSDKLGFVGEVARVDPTVIEPLVNS 234 (358)
Q Consensus 160 vt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~-----~~~d~g~~g~v~~i~~~~I~~lL~~ 234 (358)
+|++++++++.+++.|++|..+++.|+++|++++++++.|++++++++.+ +..||+++|+++.++.+.|+.+|++
T Consensus 78 ~t~~~~~~~~~~~~~g~ln~~l~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~ 157 (279)
T cd04250 78 VTDEETMEIVEMVLVGKVNKEIVSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEA 157 (279)
T ss_pred cCCHHHHHHHHHHHcCchHHHHHHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHC
Confidence 99999999999998799999999999999999999999999999999875 2468999999999999999999999
Q ss_pred CCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcH
Q 018330 235 GHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMI 314 (358)
Q Consensus 235 G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~ 314 (358)
|.|||+++++.++.|+.+++|+|.+|+++|.+|+|++|+|+|||||||+++|||+++|++++++|++++...++++|||.
T Consensus 158 g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~~~~~tGgm~ 237 (279)
T cd04250 158 GYIPVIAPVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPNDPGSLISEISLKEAEELIADGIISGGMI 237 (279)
T ss_pred CCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCCCccccccCCHHHHHHHHHcCCCCCchH
Confidence 99999999988989999999999999999999999999999999999999878889999999999999988889999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 315 PKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 315 ~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
+|+++|.+++++|+.+|+|+||+.|++|+.++|++++.||+|
T Consensus 238 ~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 238 PKVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 999999999999999999999999999999999999999986
No 6
>PRK00942 acetylglutamate kinase; Provisional
Probab=100.00 E-value=1.5e-56 Score=427.95 Aligned_cols=279 Identities=56% Similarity=0.916 Sum_probs=264.0
Q ss_pred hhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcc
Q 018330 74 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153 (358)
Q Consensus 74 ~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~ 153 (358)
...++.+||++.|||++||++++||||||+++++ ++....++++|+.|++.|.++|||||||++++.+++++++.+.
T Consensus 4 ~~~~~~~~r~~~~yi~~~~~~~iViK~GGs~l~~---~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~ 80 (283)
T PRK00942 4 ALEKAEVLSEALPYIQRFMGKTIVIKYGGNAMTD---EELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESE 80 (283)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEEEChHHhcC---cchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcE
Confidence 4588999999999999999999999999999999 4445778999999999999999999999999999999999999
Q ss_pred ccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh
Q 018330 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN 233 (358)
Q Consensus 154 ~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~ 233 (358)
+.+|+|+|+.++++++.++++|++|..+++.|+++|++++++++.|++++++++..++.||+++|+++.++.+.|+.+|+
T Consensus 81 ~~~g~~~t~~~~l~~~~~a~~G~l~~~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~ 160 (283)
T PRK00942 81 FVNGLRVTDAETMEVVEMVLAGKVNKELVSLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLE 160 (283)
T ss_pred eeCCEecCCHHHHHHHHHHHcCchHHHHHHHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHH
Confidence 99999999999999999988899999999999999999999999999999999986678999999999999999999999
Q ss_pred CCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCc
Q 018330 234 SGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGM 313 (358)
Q Consensus 234 ~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM 313 (358)
+|.|||+++++++.+|+.+++|+|++|+.+|.+|+|++|+|+|||||||++ ++++|++|+++|++++...++++|||
T Consensus 161 ~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~---~~~~i~~i~~~e~~~~~~~~~~tggm 237 (283)
T PRK00942 161 AGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD---KGQLISELTASEAEELIEDGVITGGM 237 (283)
T ss_pred CCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC---CCcccccCCHHHHHHHHHcCCCCCch
Confidence 999999999999999999999999999999999999999999999999986 47899999999999998888999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 314 IPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 314 ~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+|+++|.++++.|+.+|+|+||+.|++|+.++|+++++||+|.+
T Consensus 238 ~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~ 282 (283)
T PRK00942 238 IPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP 282 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence 999999999999999899999999999988999999999999975
No 7
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=100.00 E-value=1.7e-56 Score=450.39 Aligned_cols=271 Identities=29% Similarity=0.477 Sum_probs=252.0
Q ss_pred hHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccC
Q 018330 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD 156 (358)
Q Consensus 77 ~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~ 156 (358)
|+++|+||+|||++|+|+++|||+||+++++ +.+ .+++++|+.|+..|.++|||||||++++.+++++|++++|.+
T Consensus 1 ~~~~~~~~~~~i~~~~~~~~ViK~GG~~~~~---~~~-~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~ 76 (429)
T TIGR01890 1 FVAWFREAAPYINAHRGKTFVVGLGGELVEG---GNL-GNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHR 76 (429)
T ss_pred ChhHHhhhhHHHHHhCCCEEEEEEChhhccC---ccH-HHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeC
Confidence 5789999999999999999999999999988 444 689999999999999999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeE-----eecCCCccEEEeecCC--CCCCCCcccceeecCHHHHH
Q 018330 157 GLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAV-----GLSGMDGRLFTARPSP--NSDKLGFVGEVARVDPTVIE 229 (358)
Q Consensus 157 g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av-----~lsg~d~~ll~a~~~~--~~~d~g~~g~v~~i~~~~I~ 229 (358)
|+|+|++++|++++|+ +|++|+.+++.|+++ ++++ ++++.|++++.+++.. ++.|+|++|+|++++.+.|+
T Consensus 77 G~RvT~~~~l~~~~~~-~g~vn~~l~~~l~~~-~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~ 154 (429)
T TIGR01890 77 GLRVTDEASLEQAQQA-AGTLRLAIEARLSMS-LSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIR 154 (429)
T ss_pred CcccCCHHHHHHHHHH-hChHHHHHHHHHHhc-CCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHH
Confidence 9999999999999998 999999999999887 4443 4888899999999864 35699999999999999999
Q ss_pred HHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCC
Q 018330 230 PLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKV 309 (358)
Q Consensus 230 ~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~v 309 (358)
.+|+.|+|||++|++++.+|+.+|+|+|.+|+.||.+|+|+||+|+|||||||++ ++++|++|+.+|++++++. +
T Consensus 155 ~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~---~g~~i~~i~~~~~~~l~~~--~ 229 (429)
T TIGR01890 155 RQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDP---DGTLAAELSPQEVESLAER--L 229 (429)
T ss_pred HHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC---CCCCcccCCHHHHHHHHHh--c
Confidence 9999999999999999999999999999999999999999999999999999974 5789999999999999875 4
Q ss_pred CCC-cHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 310 GGG-MIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 310 tGG-M~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.|| |.+|+++|.++++.|++++||+||+.||+|+.|+|+++|.||+|.+
T Consensus 230 ~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~ 279 (429)
T TIGR01890 230 GSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISK 279 (429)
T ss_pred cCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEec
Confidence 456 4999999999999999999999999999999999999999999964
No 8
>PLN02825 amino-acid N-acetyltransferase
Probab=100.00 E-value=5.9e-56 Score=450.26 Aligned_cols=273 Identities=29% Similarity=0.460 Sum_probs=249.8
Q ss_pred hHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccC
Q 018330 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD 156 (358)
Q Consensus 77 ~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~ 156 (358)
+|+|||||+|||++||||++|||+||+++.+ +. +.+++.||++|+..|+++|||||||++++.++++.|++++|++
T Consensus 1 ~v~~fr~a~pYI~~~rgktfVIk~gG~~l~~---~~-~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~ 76 (515)
T PLN02825 1 FVRWFREAWPYIQGHRGSTFVVVISGEVVAG---PH-LDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVG 76 (515)
T ss_pred ChhHHHhhhHHHHHHCCCEEEEEECchhhcC---ch-HHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeC
Confidence 5899999999999999999999999999998 64 4889999999999999999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHHHhhhhHHHHHHHH---------HHcCCee----EeecCCCccEEEeecCC--CCCCCCccccee
Q 018330 157 GLRVTDANTMEIVSMVLVGRVNKSLVSLI---------NKAGATA----VGLSGMDGRLFTARPSP--NSDKLGFVGEVA 221 (358)
Q Consensus 157 g~rvt~~~~~~~v~~vl~g~ln~~lv~~L---------~~~Gi~a----v~lsg~d~~ll~a~~~~--~~~d~g~~g~v~ 221 (358)
|+|+||+++|+++ ++++|++|..+++.| +++|+++ +++++.|+++++++|.+ +++||||+|+|+
T Consensus 77 G~RVTd~~~L~~~-~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~ 155 (515)
T PLN02825 77 AYRITDSAALQAS-MEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVK 155 (515)
T ss_pred CcccCCHHHHHHH-HHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEE
Confidence 9999999999996 677999999999865 8999998 99999999999999975 357999999999
Q ss_pred ecCHHHHHHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHH
Q 018330 222 RVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVK 301 (358)
Q Consensus 222 ~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~ 301 (358)
+||.+.|+.+|++|.|||++|++++.+|+++|+|+|.+|+.+|.+|+|+||||+||++ ++++ ++++|++++.+|++
T Consensus 156 ~Vd~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~-~~~~---~g~li~~l~~~e~~ 231 (515)
T PLN02825 156 KIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGP-ILDE---NGRLIRFMTLEEAD 231 (515)
T ss_pred EEcHHHHHHHHhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcc-eecC---CCCCcCcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999977 5543 47899999999999
Q ss_pred HHHhCC-------------------------C------------------------------------------------
Q 018330 302 KMIEDG-------------------------K------------------------------------------------ 308 (358)
Q Consensus 302 ~l~~~~-------------------------~------------------------------------------------ 308 (358)
++++++ .
T Consensus 232 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (515)
T PLN02825 232 MLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDSVNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEE 311 (515)
T ss_pred HHHHhhhhcchhhhhhhhhccccccccccccccccccccccccccccccccccccccccccccCcccccccccccccchh
Confidence 987531 0
Q ss_pred ---CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 309 ---VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 309 ---vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
-+.+...|+.+|..+++.||+|+|++|++.+++||.|||+.+|+||+|..
T Consensus 312 ~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~ 364 (515)
T PLN02825 312 RLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIAS 364 (515)
T ss_pred hchhhhhHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEecc
Confidence 01223456999999999999999999999999999999999999999963
No 9
>PRK05279 N-acetylglutamate synthase; Validated
Probab=100.00 E-value=1.8e-54 Score=437.07 Aligned_cols=277 Identities=33% Similarity=0.545 Sum_probs=257.4
Q ss_pred ChhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCc
Q 018330 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEP 152 (358)
Q Consensus 73 ~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~ 152 (358)
...+++++|++++|||++||++++|||+||++|++ +++ .+++++|+.|+..|+++|||||||++++.++.++|+++
T Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~~VIk~GG~~l~~---~~~-~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~ 80 (441)
T PRK05279 5 RSTEFVDWFRHSAPYINAHRGKTFVIMLGGEAIAH---GNF-SNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEP 80 (441)
T ss_pred chhHHHHHHHHHhHHHHHhCCCEEEEEECchhccC---hhH-HHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCc
Confidence 34679999999999999999999999999999988 555 58999999999999999999999999999999999999
Q ss_pred cccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEe-----ecCCCccEEEeecCC--CCCCCCcccceeecCH
Q 018330 153 VFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVG-----LSGMDGRLFTARPSP--NSDKLGFVGEVARVDP 225 (358)
Q Consensus 153 ~~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~-----lsg~d~~ll~a~~~~--~~~d~g~~g~v~~i~~ 225 (358)
+|.+|+|+|++++++++.|++ |++|..++++|++ |+++++ +++.|++++.++|.+ ++.|+|++|+++.++.
T Consensus 81 ~~~~G~RvT~~~~l~~~~~~~-g~v~~~l~~~l~~-g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~ 158 (441)
T PRK05279 81 RYHKGLRVTDAAALECVKQAA-GELRLDIEARLSM-GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDA 158 (441)
T ss_pred eecCCcccCCHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeH
Confidence 999999999999999999995 8999999999955 998877 566688889999874 2468999999999999
Q ss_pred HHHHHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHh
Q 018330 226 TVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIE 305 (358)
Q Consensus 226 ~~I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~ 305 (358)
+.|+.+|++|+|||+++++.|.+|+.+|+|+|.+|+.||.+|+|++|+|+|||||||++ ++++|++++.+|+++++.
T Consensus 159 ~~i~~ll~~g~ipV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~---~~~~i~~i~~~~~~~~~~ 235 (441)
T PRK05279 159 EAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE---DGELIRELSPNEAQALLE 235 (441)
T ss_pred HHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC---CCchhhhCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999964 478999999999999987
Q ss_pred ---CCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 306 ---DGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 306 ---~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.++++|||.+||++|++++++|++++||+||+.|++|+.|+|+.+|.||+|++
T Consensus 236 ~~~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~ 291 (441)
T PRK05279 236 ALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVM 291 (441)
T ss_pred hhhcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEec
Confidence 78899999999999999999999999999999999999999998999999974
No 10
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=100.00 E-value=1.2e-49 Score=373.46 Aligned_cols=244 Identities=34% Similarity=0.545 Sum_probs=225.8
Q ss_pred EEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHHhhh
Q 018330 97 VVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGR 176 (358)
Q Consensus 97 VIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl~g~ 176 (358)
|||+||+++++ . +.+++++|+.|+..|.++|||||||++++++++++|++++|.+|+|+|++++++.+++++ ++
T Consensus 2 ViKiGG~~~~~---~--l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al-~~ 75 (248)
T cd04252 2 VIKVGGAIIED---D--LDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVF-LE 75 (248)
T ss_pred EEEEChhhhhc---c--HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHH-HH
Confidence 89999999988 4 478999999999999999999999999999999999999999999999999999999997 49
Q ss_pred hHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCccccCh
Q 018330 177 VNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256 (358)
Q Consensus 177 ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i~s 256 (358)
+|..+++.|+++|++++++++ .++.+++.. +.||||+|++++++.+.|+.+|+.|+|||++|++++.+|+.+|+|+
T Consensus 76 vn~~iv~~l~~~g~~a~~l~~---~~~~a~~~~-~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvna 151 (248)
T cd04252 76 ENLKLVEALERNGARARPITS---GVFEAEYLD-KDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNA 151 (248)
T ss_pred HHHHHHHHHHhCCCCcccccC---ceEEEEECc-CccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECH
Confidence 999999999999999999985 366777754 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccH-HHHHHHHhCCCCCCCcHHHHHHHHHHHHc--CCCEEEE
Q 018330 257 DTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDI-KGVKKMIEDGKVGGGMIPKVNCCIRSLAQ--GVRTASI 333 (358)
Q Consensus 257 D~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~-~e~~~l~~~~~vtGGM~~Kv~aA~~al~~--Gv~~v~I 333 (358)
|.+|+.+|.+|+|+||+|+|||||||++ ++++|++++. +++++++..+++||||++||++|.++++. ++..++|
T Consensus 152 D~~A~~lA~aL~a~kli~ltdv~GV~~~---~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i 228 (248)
T cd04252 152 DVAAGELARVLEPLKIVFLNETGGLLDG---TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSI 228 (248)
T ss_pred HHHHHHHHHHcCCCeEEEEECCcccCCC---CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEE
Confidence 9999999999999999999999999975 4789999997 57888888889999999999998888877 6677999
Q ss_pred EeCCCcchHHHHHHcCCCCceEE
Q 018330 334 IDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 334 i~G~~~~~Ll~el~~~~g~GT~I 356 (358)
++ +++|+.|+|+++|+||+|
T Consensus 229 ~~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 229 TS---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred EC---CchHHHHHhcCCCCCccC
Confidence 88 689999999999999986
No 11
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=6.8e-49 Score=369.91 Aligned_cols=255 Identities=60% Similarity=0.950 Sum_probs=237.9
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHHhh
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVG 175 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl~g 175 (358)
+||||||+++++ ++....++++|+.|+..|.++|||||+|+++|.+++++++..++.+|+|+|++++++.+.+++.+
T Consensus 1 ~ViKlGGs~l~~---~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g 77 (256)
T cd04238 1 VVIKYGGSAMKD---EELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAG 77 (256)
T ss_pred CEEEEChHHhcC---ccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcC
Confidence 589999999999 54457899999999999999999999999999999999999889999999999999999998768
Q ss_pred hhHHHHHHHHHHcCCeeEeecCCCccEEEeecCC-CCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCcccc
Q 018330 176 RVNKSLVSLINKAGATAVGLSGMDGRLFTARPSP-NSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNI 254 (358)
Q Consensus 176 ~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~-~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i 254 (358)
++|..+++.|+++|++++++++.+++++++++.+ +..||+|+|+++.++.+.|+.+|++|.|||+++++.+.+|+.+++
T Consensus 78 ~ln~~i~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~~~~~~g~~~~~ 157 (256)
T cd04238 78 KVNKELVSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDGETYNV 157 (256)
T ss_pred chHHHHHHHHHhCCCCCCCcccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCcEECCCCcEEEE
Confidence 9999999999999999999999999999998863 246899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEE
Q 018330 255 NADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASII 334 (358)
Q Consensus 255 ~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii 334 (358)
|+|++|+++|.+|+|++|+|+|||+|||++ |+++|++++++|+.+++..++++|||.+|+++|.++++.|+.+++|+
T Consensus 158 ~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~---~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~ 234 (256)
T cd04238 158 NADTAAGAIAAALKAEKLILLTDVPGVLDD---PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHII 234 (256)
T ss_pred CHHHHHHHHHHHcCCCEEEEEeCCccccCC---CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEe
Confidence 999999999999999999999999999986 57899999999999998878899999999999999999999889999
Q ss_pred eCCCcchHHHHHHcCCCCceEE
Q 018330 335 DGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 335 ~G~~~~~Ll~el~~~~g~GT~I 356 (358)
||+.|++|+.+++.+++.||+|
T Consensus 235 ~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 235 DGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred CCCCCcHHHHHHhcCCCCCCCC
Confidence 9999999988887667899986
No 12
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=100.00 E-value=1.4e-48 Score=370.21 Aligned_cols=252 Identities=36% Similarity=0.567 Sum_probs=229.5
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccC---C--cccCCHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD---G--LRVTDANTMEIV 169 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~---g--~rvt~~~~~~~v 169 (358)
++||||||+++.+ + ..++++|+.++..|.++|||||||+++|++++++|++++|.+ | +|+|++++|+.+
T Consensus 1 ~~ViK~GG~~l~~---~---~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~ 74 (268)
T PRK14058 1 MIVVKIGGSVGID---P---EDALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVF 74 (268)
T ss_pred CEEEEEChHHhhC---c---HHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHH
Confidence 4899999999998 3 357999999999999999999999999999999999999987 6 899999999999
Q ss_pred HHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCC------C----CCCCCcccceeecCHHHHHHHHhCCCeEE
Q 018330 170 SMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSP------N----SDKLGFVGEVARVDPTVIEPLVNSGHIPV 239 (358)
Q Consensus 170 ~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~------~----~~d~g~~g~v~~i~~~~I~~lL~~G~IPV 239 (358)
.+++. ++|..+++.|+++|++++++++.+.+++++.+.. + ..|++|+|+++.++.+.|+.+|++|.|||
T Consensus 75 ~~a~~-~ln~~lv~~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPV 153 (268)
T PRK14058 75 IMAMA-LINKQLVERLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPV 153 (268)
T ss_pred HHHHH-HHHHHHHHHHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEE
Confidence 99976 9999999999999999999999999998876531 1 25889999999999999999999999999
Q ss_pred EcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHH
Q 018330 240 IASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNC 319 (358)
Q Consensus 240 i~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~a 319 (358)
++|++.+.+|+.+|+|+|.+|+.+|.+|+|++|+|+|||||||+++|+++++|++++.+|++++.. +++|||.+|+++
T Consensus 154 i~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~--~~tGgM~~Kl~a 231 (268)
T PRK14058 154 VAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPDEGSLIERITPEEAEELSK--AAGGGMKKKVLM 231 (268)
T ss_pred EeCceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCCCCcCccCcCHHHHHHHhh--ccCCccHHHHHH
Confidence 999888888999999999999999999999999999999999998766678999999999999864 589999999999
Q ss_pred HHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 320 CIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 320 A~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
|.++++.|++++||+||+.|++|+.++ . |.||+|.+
T Consensus 232 a~~a~~~Gv~~v~I~~g~~~~~l~~~l-~--G~GT~I~~ 267 (268)
T PRK14058 232 AAEAVEGGVGRVIIADANVDDPISAAL-A--GEGTVIVN 267 (268)
T ss_pred HHHHHHcCCCEEEEEcCCCcchHHHHh-C--CCceEEec
Confidence 999999999889999999999986655 4 46999963
No 13
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=100.00 E-value=5.7e-49 Score=371.17 Aligned_cols=245 Identities=18% Similarity=0.287 Sum_probs=224.1
Q ss_pred HHhhhHHHHhhcC-------CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcc
Q 018330 81 LSESLPFIQKFRG-------KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153 (358)
Q Consensus 81 l~~a~pyi~~~~~-------k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~ 153 (358)
-||+..|+++|.. +.+|||+||++|.+ ++.+++++++|++|++.|.++||||||||+++..+. +.+
T Consensus 16 ~~e~~~~l~~f~~~~~~~~~~f~VIK~GG~~~~~---~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~----~~~ 88 (271)
T cd04236 16 PREARYWLTQFQIAMPNDWPAFAVLEVDHSVFRS---LEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS----DLE 88 (271)
T ss_pred HHHHHHHHHHhhccCCCCCCCEEEEEEChhhhcC---chhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc----CCc
Confidence 5899999999975 78999999999987 666689999999999999999999999999988776 222
Q ss_pred ccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh
Q 018330 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN 233 (358)
Q Consensus 154 ~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~ 233 (358)
+ ..+++++. ++|+.+++.|+++|++++++++. ++++++++ ..|++++|+|+++|.+.|+.+|+
T Consensus 89 ~------------~~~~~v~~-~~n~~Lv~~L~~~G~~A~gl~g~-~~~i~a~~---~~d~g~vG~V~~Vd~~~I~~lL~ 151 (271)
T cd04236 89 L------------QAARSRLV-KDCKTLVEALQANSAAAHPLFSG-ESVLQAEE---PEPGASKGPSVSVDTELLQWCLG 151 (271)
T ss_pred c------------hheehhHH-HHHHHHHHHHHhCCCCeeeecCc-cceEEEEE---cccCCccceEEEECHHHHHHHHh
Confidence 2 22456656 89999999999999999999987 58999988 35789999999999999999999
Q ss_pred CCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccH-HHHHHHHhCCCCCCC
Q 018330 234 SGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDI-KGVKKMIEDGKVGGG 312 (358)
Q Consensus 234 ~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~-~e~~~l~~~~~vtGG 312 (358)
+|+|||++|+++|.+|+.+|+|+|.+|+.+|.+|+|+||||+||++||+++ ++++|++|+. +|+++++++++++||
T Consensus 152 ~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~---~g~lI~~l~~~~e~~~li~~g~i~gG 228 (271)
T cd04236 152 SGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQ---KHKVLPQVHLPADLPSLSDAEWLSET 228 (271)
T ss_pred CCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECC---CCCCccccCcHHHHHHHHhCCEEcCC
Confidence 999999999999999999999999999999999999999999999999974 4789999995 999999999999999
Q ss_pred c---HHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 313 M---IPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 313 M---~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
| +||+++|+.++..|++ |+|++ |++|+.|+|++.|.||+|
T Consensus 229 m~~ki~ki~~~l~~l~~g~s-v~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 229 EQNRIQDIATLLNALPSMSS-AVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred eeechHHHHHHHHhcccCCe-EEEeC---hHHHHHHHhccCCCCCcC
Confidence 9 9999999999999999 99998 899999999999999986
No 14
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=4.7e-48 Score=363.49 Aligned_cols=251 Identities=33% Similarity=0.529 Sum_probs=232.8
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhH-hCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHHh
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLS-VVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLV 174 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~-~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl~ 174 (358)
.||||||+++++ +..+.+++++|+.++ ..|.++|||||||++++.++++++++++|.+|+|+|+.++++++.+++.
T Consensus 1 ~ViK~GGs~l~~---~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~ 77 (252)
T cd04249 1 LVIKLGGALLET---EAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALA 77 (252)
T ss_pred CEEEEChHHhcC---hhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHc
Confidence 489999999988 544578999999875 4678999999999999999999999999999999999999999999888
Q ss_pred hhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCcccc
Q 018330 175 GRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNI 254 (358)
Q Consensus 175 g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i 254 (358)
+++|+.+++.|.++|++++++++.|++++++++.+ .|++++|+++.++.+.|+.+|+.|.|||+++++++++|+++|+
T Consensus 78 ~~~n~~lv~~l~~~Gv~a~~l~~~~~~~~~~~~~~--~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~ 155 (252)
T cd04249 78 GTANKQLMAQAIKAGLKPVGLSLADGGMTAVTQLD--PELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLMNV 155 (252)
T ss_pred CcccHHHHHHHHhCCCCceeeeccCCCEEEEEEcC--CCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCEeee
Confidence 89999999999999999999999999999999875 5799999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEE
Q 018330 255 NADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASII 334 (358)
Q Consensus 255 ~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii 334 (358)
|+|++|+++|.+|+|+ ++|+|||+|||++ | +++|++++.+|+++++..++++|||.+|+++|.++++.|+.++||+
T Consensus 156 ~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~--~-~~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~ 231 (252)
T cd04249 156 NADQAATAIAQLLNAD-LVLLSDVSGVLDA--D-KQLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIA 231 (252)
T ss_pred cHHHHHHHHHHHcCCC-EEEEeCCcccCCC--C-CcCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEE
Confidence 9999999999999999 7899999999986 2 4799999999999998888999999999999999999988889999
Q ss_pred eCCCcchHHHHHHcCCCCceEE
Q 018330 335 DGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 335 ~G~~~~~Ll~el~~~~g~GT~I 356 (358)
+|+.|+.| .++|++++.||+|
T Consensus 232 ~g~~~~~l-~~~l~g~~~GT~I 252 (252)
T cd04249 232 SWQYPEQL-TALLAGEPVGTKI 252 (252)
T ss_pred eCCCccHH-HHHHcCCCCCcCC
Confidence 99999975 7899999999986
No 15
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=5.4e-47 Score=357.25 Aligned_cols=242 Identities=40% Similarity=0.677 Sum_probs=221.7
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccC---C--cccCCHHHHHHHH
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD---G--LRVTDANTMEIVS 170 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~---g--~rvt~~~~~~~v~ 170 (358)
+||||||+++++ . ..++++|++| |.++|||||||+++|.+++++|++++|.+ | .|+|++++|+.+.
T Consensus 1 ~VIKlGGs~l~~---~---~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~ 71 (257)
T cd04251 1 IVVKIGGSVVSD---L---DKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFV 71 (257)
T ss_pred CEEEEChHHhhC---h---HHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHH
Confidence 589999999997 2 5689999988 89999999999999999999999999975 7 4999999999999
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecC--------C--CCCCCCcccceeecCHHHHHHHHhCCCeEEE
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPS--------P--NSDKLGFVGEVARVDPTVIEPLVNSGHIPVI 240 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~--------~--~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi 240 (358)
+++ +++|+.+++.|+++|++++++++.++++++++.. + ...|++|+|+++.++.+.|+.+|++|.|||+
T Consensus 72 ~a~-~~ln~~iv~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi 150 (257)
T cd04251 72 MVM-GLINKKIVARLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVV 150 (257)
T ss_pred HHH-HHHHHHHHHHHHhCCCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEE
Confidence 997 9999999999999999999999999999988864 1 1347899999999999999999999999999
Q ss_pred cCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHH
Q 018330 241 ASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCC 320 (358)
Q Consensus 241 ~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA 320 (358)
+|++++.+|+.+|+|+|++|+.+|.+|+|++|+|+|||+|||++ +++|++++++|+++++. +++|||.+|+++|
T Consensus 151 ~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~----~~~i~~i~~~e~~~l~~--~~~ggm~~Kl~aa 224 (257)
T cd04251 151 SPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLD----GRVIERITVSDAESLLE--KAGGGMKRKLLAA 224 (257)
T ss_pred eCcEECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeC----CcccCccCHHHHHHHHh--hCCCchHHHHHHH
Confidence 99999989999999999999999999999999999999999974 68999999999999873 5999999999999
Q ss_pred HHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
.++++.|+.++||+||+.|++| .+++. |.||.|
T Consensus 225 ~~a~~~gv~~v~i~~g~~~~~l-~~~l~--g~gT~i 257 (257)
T cd04251 225 AEAVEGGVREVVIGDARADSPI-SSALN--GGGTVI 257 (257)
T ss_pred HHHHHcCCCEEEEecCCCccHH-HHHHc--CCCcCC
Confidence 9999999999999999999997 55665 469976
No 16
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=100.00 E-value=1e-46 Score=349.93 Aligned_cols=231 Identities=54% Similarity=0.896 Sum_probs=218.7
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHHh
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLV 174 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl~ 174 (358)
++||||||+++++ + +.+++++|+.|+..|.++|||||||++++.++++++++.++.+|+|+|++++++.+.+++.
T Consensus 1 ~~ViK~GGs~l~~---~--~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~ 75 (231)
T TIGR00761 1 TIVIKIGGAAISD---L--LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLI 75 (231)
T ss_pred CEEEEEChHHHhc---c--HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHh
Confidence 5899999999998 4 5789999999999999999999999999999999999988999999999999999999988
Q ss_pred hhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCcccc
Q 018330 175 GRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNI 254 (358)
Q Consensus 175 g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i 254 (358)
|++|+.+++.|+++|++++++++.+++++++++.. ..|++++|+++.++.+.|+.+|++|.|||++|++.+.+|+++|+
T Consensus 76 g~~~~~i~~~L~~~G~~a~~l~~~~~~~it~~~~~-~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~~~~~~g~~~~l 154 (231)
T TIGR00761 76 GQVNKELVALLNKHGINAIGLTGGDGQLFTARSLD-KEDLGYVGEIKKVNKALLEALLKAGYIPVISSLALTAEGQALNV 154 (231)
T ss_pred cchHHHHHHHHHhCCCCcccccCCCCCEEEEEECC-CccCCcccceEEEcHHHHHHHHHCCCeEEECCCccCCCCcEEEe
Confidence 89999999999999999999999999999999865 46799999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEE
Q 018330 255 NADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASI 333 (358)
Q Consensus 255 ~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~I 333 (358)
|+|++|+.+|.+|+|++|+|+|||||||++ ||+++|++|+++|+++++..+++||||++||++|.++++.|++++||
T Consensus 155 ~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~--d~~~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~v~i 231 (231)
T TIGR00761 155 NADTAAGALAAALGAEKLVLLTDVPGILNG--DGQSLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSVHI 231 (231)
T ss_pred CHHHHHHHHHHHcCCCEEEEEECCCCeecC--CCCeeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCEEEC
Confidence 999999999999999999999999999987 56679999999999999988899999999999999999999999986
No 17
>PRK04531 acetylglutamate kinase; Provisional
Probab=100.00 E-value=9.2e-44 Score=352.65 Aligned_cols=225 Identities=34% Similarity=0.531 Sum_probs=206.6
Q ss_pred HHhhhHHHHhhcC----CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccC
Q 018330 81 LSESLPFIQKFRG----KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD 156 (358)
Q Consensus 81 l~~a~pyi~~~~~----k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~ 156 (358)
-||++||+++||+ +++|||+||+++.+ + .+.++++|++|+..|.++|||||||++++.++++.|++++|.+
T Consensus 20 ~~e~~~~l~~F~~~~~~~~~VIKiGG~~l~~---~--~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~ 94 (398)
T PRK04531 20 AKEISQYLKRFSQLDAERFAVIKVGGAVLRD---D--LEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVN 94 (398)
T ss_pred hhhhHHHHHHHhCcCCCcEEEEEEChHHhhc---C--HHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEEC
Confidence 4799999999998 99999999999986 3 3789999999999999999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCC
Q 018330 157 GLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGH 236 (358)
Q Consensus 157 g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~ 236 (358)
|+|+|++++|+++.|++ +++|..+++. |+.+|+.|+
T Consensus 95 G~RVTd~~tl~vv~~~l-~~vn~~lv~~-------------------------------------------I~~~L~~g~ 130 (398)
T PRK04531 95 GLRVTSPEALAIVRKVF-QRSNLDLVEA-------------------------------------------VESSLRAGS 130 (398)
T ss_pred CEecCCHHHHHHHHHHH-HHHHHHHHHH-------------------------------------------HHHHHHCCC
Confidence 99999999999999996 4888766653 788999999
Q ss_pred eEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccH-HHHHHHHhCCCCCCCcHH
Q 018330 237 IPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDI-KGVKKMIEDGKVGGGMIP 315 (358)
Q Consensus 237 IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~-~e~~~l~~~~~vtGGM~~ 315 (358)
|||++|++.+.+|+++|+|+|.+|+.+|.+|+|+||||+||++|||+. ++++|++|+. +|++.++..++++|||++
T Consensus 131 IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~---~g~~i~~i~~~~e~~~l~~~~~vtgGM~~ 207 (398)
T PRK04531 131 IPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDA---DGKLISSINLSTEYDHLMQQPWINGGMKL 207 (398)
T ss_pred EEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC---CCCCcccCCHHHHHHHHHhcCCCCccHHH
Confidence 999999998889999999999999999999999999999999999974 3789999997 688888888899999999
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 316 KVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 316 Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
||++|.++++ +++++|++++..|++|+.|+|+++|.||+|.+
T Consensus 208 KL~~a~~al~-~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~ 249 (398)
T PRK04531 208 KLEQIKELLD-RLPLESSVSITSPSDLAKELFTHKGSGTLVRR 249 (398)
T ss_pred HHHHHHHHHh-CCCcEEEEEecCCCHHHHHHccCCCCCeEEec
Confidence 9999999985 46679999999999999999999999999964
No 18
>PRK12352 putative carbamate kinase; Reviewed
Probab=100.00 E-value=4.7e-43 Score=337.30 Aligned_cols=260 Identities=22% Similarity=0.333 Sum_probs=218.1
Q ss_pred CCeEEEEECCcccCCCChh-------HHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHH-
Q 018330 93 GKTIVVKYGGAAMKPNQKD-------NLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDAN- 164 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~~-------~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~- 164 (358)
.|++||||||++|.+++.. +-...++++|++|++.|+++|||||+||+++.++.+.++.++| +|+|+|+.+
T Consensus 2 ~k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~-~g~rvt~~~~ 80 (316)
T PRK12352 2 KELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHER-EGLPLTPLAN 80 (316)
T ss_pred CcEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCccccc-CCCCCCCHHH
Confidence 3799999999999774311 2236899999999999999999999999999999999999999 699999997
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHcCCee-------EeecCCCccEE-EeecCCC-------------CCCCCcccc----
Q 018330 165 TMEIVSMVLVGRVNKSLVSLINKAGATA-------VGLSGMDGRLF-TARPSPN-------------SDKLGFVGE---- 219 (358)
Q Consensus 165 ~~~~v~~vl~g~ln~~lv~~L~~~Gi~a-------v~lsg~d~~ll-~a~~~~~-------------~~d~g~~g~---- 219 (358)
+.+.....+.+.+|+.|+..|.++|..+ +++++.|++++ .++|.+. ..|++|++.
T Consensus 81 ~v~~~~g~i~~~i~~~L~~~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G 160 (316)
T PRK12352 81 CVADTQGGIGYLIQQALNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRG 160 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCC
Confidence 3333333335788999999999988663 88899999998 6666431 237888555
Q ss_pred ----------eeecCHHHHHHHHhCCCeEEEc-----CCccCCCCC----ccccChHHHHHHHHHHcCCCeEEEeecccc
Q 018330 220 ----------VARVDPTVIEPLVNSGHIPVIA-----SVAADEFGQ----SYNINADTVAGELAAALGAEKLILLTDVAG 280 (358)
Q Consensus 220 ----------v~~i~~~~I~~lL~~G~IPVi~-----gv~~~~~G~----~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~G 280 (358)
++.++.+.|+.||++|+|||.+ |++.+..|+ .+|+|+|.+|+.+|.+|+||+|||+|||+|
T Consensus 161 ~rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~G 240 (316)
T PRK12352 161 YRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEK 240 (316)
T ss_pred eEEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchh
Confidence 9999999999999999996666 665555554 456999999999999999999999999999
Q ss_pred ccccccccC-cccccccHHHHHHHHhCCCC-CCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 281 ILENREDPM-SLVKEIDIKGVKKMIEDGKV-GGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 281 V~~~~~dp~-~lI~~I~~~e~~~l~~~~~v-tGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
||.++++|+ ++|++++.+|++++++++.+ +|||.||+++|+++++.|+.++||++ ++.+ .++|+|+ .||+|.+
T Consensus 241 V~~d~~~~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i-~~al~g~-~GT~I~~ 315 (316)
T PRK12352 241 VCIHFGKPQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECL-PAALRGE-TGTHIIK 315 (316)
T ss_pred hccCCCCCCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHH-HHHHcCC-CCeEEEe
Confidence 998876666 59999999999999988877 48999999999999999999999997 6665 6788877 9999863
No 19
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=4.6e-43 Score=329.39 Aligned_cols=241 Identities=27% Similarity=0.409 Sum_probs=208.5
Q ss_pred eEEEEECCcccCCCCh-----hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQK-----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIV 169 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~-----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v 169 (358)
++|||+||+++++++. ...+++++++|+.++ |+++|||||||++++.+++++|+++ |.|+++++.+..+
T Consensus 1 ~iVIKiGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~~~g~~~----g~~~~~~~~l~~~ 74 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEYGLPD----GDGSFSAEGVAET 74 (252)
T ss_pred CEEEEEeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHHHHhCCCc----CCCchhhhhHHHH
Confidence 4899999999998642 123355666666554 9999999999999999999999986 7789999999988
Q ss_pred HHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccCCC
Q 018330 170 SMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AADEF 248 (358)
Q Consensus 170 ~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~~~ 248 (358)
.+. ++++|..+++.|.++|+++.++++.+. +.++ .|++..++.+.++.+|++|+|||++|. +.+.+
T Consensus 75 ~~~-~~~ln~~~~~~l~~~g~~a~~l~~~~~--~~~~----------~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~ 141 (252)
T cd04241 75 HEA-MLELNSIVVDALLEAGVPAVSVPPSSF--FVTE----------NGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEG 141 (252)
T ss_pred HHH-HHHHHHHHHHHHHHCCCCeEEEChHHe--EEec----------CCeeeeecHHHHHHHHhCCCEEEEcCCeEecCC
Confidence 887 469999999999999999999998553 3322 467788999999999999999999984 46778
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHh-----CCCCCCCcHHHHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIE-----DGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~-----~~~vtGGM~~Kv~aA~~a 323 (358)
|+.+|+|+|++|+.+|.+|+|++|+|+|||||||+++|+++++|++++.+|++++.. .++++|||.+|+++|..+
T Consensus 142 ~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a 221 (252)
T cd04241 142 GGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPPPDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLEL 221 (252)
T ss_pred CCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHH
Confidence 889999999999999999999999999999999998664457999999988988876 467999999999999999
Q ss_pred HHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 324 LAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
++.|++ ++|+||+.|+.| .++++++.+||+|
T Consensus 222 ~~~Gv~-v~I~~g~~~~~l-~~~l~g~~~GT~i 252 (252)
T cd04241 222 ARRGIE-VYIFNGDKPENL-YRALLGNFIGTRI 252 (252)
T ss_pred HhcCCe-EEEEeCCCHHHH-HHHHcCCCCceEC
Confidence 999998 999999999886 6788988999986
No 20
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=100.00 E-value=2.6e-38 Score=295.15 Aligned_cols=242 Identities=28% Similarity=0.453 Sum_probs=213.1
Q ss_pred EEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHHhhh
Q 018330 97 VVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGR 176 (358)
Q Consensus 97 VIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl~g~ 176 (358)
||||||+++++ +..+.+++++|+.++..|+++|||||||++++.++.+++....+..+.++++.+..+++.+. .+.
T Consensus 1 ViKiGGs~l~~---~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 76 (248)
T cd02115 1 VIKFGGSSVSS---EERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMG-EGM 76 (248)
T ss_pred CEeeCccccCC---HHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHH-HHH
Confidence 79999999998 55567899999999888999999999999999999998887777778899998888887776 478
Q ss_pred hHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCC---CCCccc
Q 018330 177 VNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE---FGQSYN 253 (358)
Q Consensus 177 ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~---~G~~~~ 253 (358)
++..+++.|+++|+++.++++.+..+... +++++|.+..++.+.|+.+|+.|.|||++|+.... .++..+
T Consensus 77 ~~~~~~~~l~~~gi~a~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~ 149 (248)
T cd02115 77 SNLLIAAALEQHGIKAVPLDLTQAGFASP-------NQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGR 149 (248)
T ss_pred HHHHHHHHHHhCCCCeEEEchHHcCeEeC-------CCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecC
Confidence 88899999999999999999877766543 36778999999999999999999999999975433 677889
Q ss_pred cChHHHHHHHHHHcCCCeEEEeeccccccccccc--c-CcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCE
Q 018330 254 INADTVAGELAAALGAEKLILLTDVAGILENRED--P-MSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRT 330 (358)
Q Consensus 254 i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p-~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~ 330 (358)
+++|++|+.+|.+|+|++|+|+|||+|||+++|. | +++|++|+++|++++... |+|..|++++..+.+.|++
T Consensus 150 ~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~----g~~~~k~~a~~~~~~~~~~- 224 (248)
T cd02115 150 GGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYA----GAMVLKPKAADPAARAGIP- 224 (248)
T ss_pred CCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHc----CCCccCHHHHHHHHHcCCc-
Confidence 9999999999999999999999999999998542 2 479999999999998753 6799999999999999976
Q ss_pred EEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 331 ASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 331 v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
++|+|++.|++| ++|++++.||+|
T Consensus 225 v~I~~~~~~~~l--~~~~~~~~GT~I 248 (248)
T cd02115 225 VRIANTENPGAL--ALFTPDGGGTLI 248 (248)
T ss_pred EEEEeCCCcccc--cccCCCCCCCCC
Confidence 999999999997 899999999986
No 21
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=100.00 E-value=6.6e-37 Score=284.74 Aligned_cols=229 Identities=39% Similarity=0.623 Sum_probs=204.5
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVL 173 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl 173 (358)
|++||||||+++++++ +. +..++++|+.+...|+++|||||||++++.+++++++.+.+.++.|+++.....++.+.+
T Consensus 1 k~~ViK~GGs~l~~~~-~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 78 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKD-EE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPKFVDGSRVTDIETGLIITMAA 78 (242)
T ss_dssp SEEEEEE-HHGHSSHS-HH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTSEETHHCHBHHHHHHHHHHHH
T ss_pred CeEEEEECchhhCCch-HH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCcccchhhhhhhhhhhHHHHHHH
Confidence 6899999999999922 15 689999999999999999999999999999999999999998899999999888888888
Q ss_pred hhhhHH-----HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCc-cCC
Q 018330 174 VGRVNK-----SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVA-ADE 247 (358)
Q Consensus 174 ~g~ln~-----~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~-~~~ 247 (358)
.+++|+ .++..+..+|+.++++.+.+.++....... ..++.+.|+.+|++|.|||++|+. .+.
T Consensus 79 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~l~~~~ipVv~g~~~~~~ 147 (242)
T PF00696_consen 79 AAELNRDALLDEIVSAGERLGAHAVGLSLSDGGISAAKRDA-----------REVDKEAIRELLEQGIIPVVSGFAGIDD 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTHHEEEHHHTGGTEEEEEEES-----------SEEHHHHHHHHHHTTSEEEEESEEEEET
T ss_pred hhccccchhHHHHHHhhhhhhHHHHhhhhhcccchhhhhhh-----------hhhHHHHHHHHHHCCCEEEEeCCcccCC
Confidence 889998 899999999999999998887776655422 156899999999999999999976 888
Q ss_pred CCCc---cccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHH-hCCCCCCCcHHHHHHH
Q 018330 248 FGQS---YNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMI-EDGKVGGGMIPKVNCC 320 (358)
Q Consensus 248 ~G~~---~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~-~~~~vtGGM~~Kv~aA 320 (358)
+|++ .++++|++|+++|.+|+|++|+|+|||||||+.+|+ |+ ++|++|+++|+.++. ..++++|||.+|+.+|
T Consensus 148 ~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a 227 (242)
T PF00696_consen 148 DGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAA 227 (242)
T ss_dssp TSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHH
T ss_pred CCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 9999 999999999999999999999999999999997542 34 699999999999998 6788999999999999
Q ss_pred HHHHHcCCCEEEEEe
Q 018330 321 IRSLAQGVRTASIID 335 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~ 335 (358)
.++++.|+.+++|+|
T Consensus 228 ~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 228 LEAAEEGGIPVHIIN 242 (242)
T ss_dssp HHHHHHTTSEEEEEE
T ss_pred HHHHHcCCCcEEEeC
Confidence 999999887799986
No 22
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-36 Score=294.83 Aligned_cols=330 Identities=34% Similarity=0.478 Sum_probs=269.6
Q ss_pred cccc-cccccccccccCC-CCCCceeeecC-CccccccccccccccccccccccccccccCCCCChhhhHHHHHhhhHHH
Q 018330 12 APFL-QSQLSFSSKSKAG-SQSPSVFKIKT-PHVENFASNHRTEITKSSRSLTSAATAVTDTQTPAEFRVDILSESLPFI 88 (358)
Q Consensus 12 ~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~pyi 88 (358)
--|+ ++..+|.++.+.+ +..|+++.|.+ .|. +|.-..+..+++... .-. ...++..++.+++|++||+
T Consensus 19 ~s~~s~~~k~~l~~~~s~~~~~~~~~~F~~~~~s---~~~~~st~~~~~~~d---~~i---~~~s~~~~v~~~~e~l~yi 89 (520)
T KOG2436|consen 19 NSFRSRSPKSFLSKNASNKSGSPNTCSFARRGWS---KPANSSTKSSIADRD---ALI---PLVSSDTTVRILRESLPYI 89 (520)
T ss_pred cceeecCcccccCccCCCCcCCCCceeecccccc---ccccccccccccccc---ccc---cCCCChhHHHHHHHHHHHH
Confidence 3466 8888999998886 66699999988 444 443333322222211 000 1236688999999999999
Q ss_pred HhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHH
Q 018330 89 QKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 89 ~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
+.|+++++||+.+|.++.. .+...+++++++|+..|.++|||||+++++++++...|+++.|.+|+|+|+..+|++
T Consensus 90 ~~~~~q~fvV~~~g~~~~t----~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~ 165 (520)
T KOG2436|consen 90 TSFRDQKFVVIKSGEAIST----SLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQA 165 (520)
T ss_pred HHhcCceEEEEeccccccc----chHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHH
Confidence 9999998888888888843 345789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHcCCeeEeecCCC--ccEEEeec--CCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCc
Q 018330 169 VSMVLVGRVNKSLVSLINKAGATAVGLSGMD--GRLFTARP--SPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVA 244 (358)
Q Consensus 169 v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d--~~ll~a~~--~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~ 244 (358)
..+..++|.|..++..|+++|-.+++.++.+ ++++.+++ ..++++|+++|+|.+++.+.|+++++.|.+|+++.++
T Consensus 166 ~~~~~~~E~n~~lv~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla 245 (520)
T KOG2436|consen 166 AKESVSLEANLNLVINLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLA 245 (520)
T ss_pred hhhcchhhhhhHHHHHHHHhhceeccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhc
Confidence 9996688999999999999999999988763 45788887 3457899999999999999999999999999999999
Q ss_pred cCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHH----HHHHHhCCCCCCCcHHHHHHH
Q 018330 245 ADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKG----VKKMIEDGKVGGGMIPKVNCC 320 (358)
Q Consensus 245 ~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e----~~~l~~~~~vtGGM~~Kv~aA 320 (358)
.+.+|+.+|+|+|.+|.++|..|+|+++++++|+ |...+ ..++.++-++.+| ++....+..++++|..++..+
T Consensus 246 ~TaSGqvlnvNa~~~a~elA~~L~~~kli~l~d~-g~~l~--e~ge~~S~l~l~~e~~~l~k~~qq~~~a~~~v~aV~~~ 322 (520)
T KOG2436|consen 246 ATASGQVLNVNADEVAGELALALGPDKLILLMDK-GRILK--ENGEDISSLILQEEDAGLRKPSQQKNIAANNVKAVKDG 322 (520)
T ss_pred ccCccceEEeeHHHHhhHHHhccCcceeEEeccc-ccccc--cCcccccccccchhHhhhhhhhhhcccccccchhhhhh
Confidence 9999999999999999999999999999999997 44432 1134555555443 444445677999999999998
Q ss_pred HHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
..+....... +.++...+++++.++|+++|.||+|.|
T Consensus 323 ~~~~~p~~~s-~~i~~~t~~n~~~~~~te~G~~t~~~~ 359 (520)
T KOG2436|consen 323 IDSSLPRPSS-YNIAITTQQNLIKELFTEKGAGTLISG 359 (520)
T ss_pred eeeccCcCCC-CCcceeecccccceeeccCCCCccccC
Confidence 8875555554 677778888888999999999999875
No 23
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=100.00 E-value=6.7e-35 Score=278.29 Aligned_cols=250 Identities=23% Similarity=0.248 Sum_probs=188.6
Q ss_pred CCeEEEEECCcccCCCCh----hHHHHHHHHHHHHhHhCCCeEE-EEECChHHHhHHHHHcCC-Cccc---cCCcc----
Q 018330 93 GKTIVVKYGGAAMKPNQK----DNLLASVVKDLVLLSVVGLRPV-LVHGGGPEINFWLKRFGI-EPVF---RDGLR---- 159 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~----~~l~~~~~~~Ia~L~~~G~~vV-LVhGgg~~i~~~l~~~gi-~~~~---~~g~r---- 159 (358)
.+++|||+||++|++++. ...+..++++|+.|++.|+++| ++||++.+++..+..++. ...+ ..|..
T Consensus 8 ~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~~~~~ 87 (284)
T cd04256 8 AKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQLKDM 87 (284)
T ss_pred CCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhcccccccCC
Confidence 389999999999998752 2345789999999999999999 666667777877765542 1111 11111
Q ss_pred cCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEE
Q 018330 160 VTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPV 239 (358)
Q Consensus 160 vt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPV 239 (358)
..+....+++..+.+..|...|.+.|+++|+.+ +|++.+++. |.. .+......+.|+.||+.|+|||
T Consensus 88 ~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~-------~q~llt~~d-----~~~-~~~~~~~~~~l~~lL~~g~iPV 154 (284)
T cd04256 88 PQMELDGRACAAVGQSGLMALYEAMFTQYGITV-------AQVLVTKPD-----FYD-EQTRRNLNGTLEELLRLNIIPI 154 (284)
T ss_pred cchhHHHHHHHHcccHHHHHHHHHHHHHcCCcH-------HHeeeeccc-----ccc-HHHHHHHHHHHHHHHHCCCEEE
Confidence 222233455566666788899999999999987 677666542 211 1123345889999999999999
Q ss_pred EcC-Ccc------CCCCCc--cccChHHHHHHHHHHcCCCeEEEeecccccccccc-ccC-cccccccHHHHHHHHh---
Q 018330 240 IAS-VAA------DEFGQS--YNINADTVAGELAAALGAEKLILLTDVAGILENRE-DPM-SLVKEIDIKGVKKMIE--- 305 (358)
Q Consensus 240 i~g-v~~------~~~G~~--~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~-dp~-~lI~~I~~~e~~~l~~--- 305 (358)
+++ ... +++|+. .++|+|++|+++|..++|++|+|+|||||||+++| +|+ ++|++++..+...+..
T Consensus 155 i~~nD~v~~~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~~~~~~ 234 (284)
T cd04256 155 INTNDAVSPPPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTFYPGDQQSITFGTK 234 (284)
T ss_pred EeCCCcccccccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCCCCCCeEcccccHhHHHHhhcccc
Confidence 996 221 122443 35899999999999999999999999999999854 344 6999999877766532
Q ss_pred CCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 306 DGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 306 ~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+.+||||.+||++|..+.+.|++ ++|++|+.|+.| .+++.|+.+||+|.
T Consensus 235 s~~gtGGM~~Kl~Aa~~a~~~Gi~-v~I~~G~~~~~i-~~~l~G~~~GT~~~ 284 (284)
T cd04256 235 SRVGTGGMEAKVKAALWALQGGTS-VVITNGMAGDVI-TKILEGKKVGTFFT 284 (284)
T ss_pred cCcccCCcHHHHHHHHHHHHCCCe-EEEEcCCCccHH-HHHHcCCCCCEEeC
Confidence 345799999999999999999998 999999999996 67889999999984
No 24
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=267.91 Aligned_cols=238 Identities=23% Similarity=0.338 Sum_probs=181.2
Q ss_pred eEEEEECCcccCCCChh-HHHHHHHHHHHH-hH-hCCCeEEEEECChHHHhHHHHHcCCCc--c--ccCCcccCCHHHHH
Q 018330 95 TIVVKYGGAAMKPNQKD-NLLASVVKDLVL-LS-VVGLRPVLVHGGGPEINFWLKRFGIEP--V--FRDGLRVTDANTME 167 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~-~l~~~~~~~Ia~-L~-~~G~~vVLVhGgg~~i~~~l~~~gi~~--~--~~~g~rvt~~~~~~ 167 (358)
.+|+|||||++|+|+.+ .++++.++.++. +. ..-.++|||||||+|+|...++++++. . ...|...|+..
T Consensus 2 ~~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~~~~~~livVHGgGSFGHp~Ak~~~~~~~~~~~s~~G~~~~~~a--- 78 (252)
T COG1608 2 VIILKLGGSVITDKDKPRTVREDRLRRIAREISNGKPEKLIVVHGGGSFGHPAAKEFGLEGLKNYLSPLGFSLTHLA--- 78 (252)
T ss_pred eEEEEecceeeecCCCcchhhHHHHHHHHHHHhcCCcccEEEEecCccccCHHHHHhCccccccccCccchHHHHHH---
Confidence 38999999999999864 344444444443 32 223478999999999999999999931 1 12344444433
Q ss_pred HHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccC
Q 018330 168 IVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAAD 246 (358)
Q Consensus 168 ~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~ 246 (358)
+-+||..+++.|.+.|+++++..+.+.- .+.|++..-..+.++.+|+.|++||++| +..+
T Consensus 79 ------m~~L~~~V~~~l~~~Gv~av~~~P~s~~-------------~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d 139 (252)
T COG1608 79 ------MLELNSIVVDALLDAGVRAVSVVPISFS-------------TFNGRILYTYLEAIKDALEKGFVPVLYGDVVPD 139 (252)
T ss_pred ------HHHHHHHHHHHHHhcCCccccccCccee-------------ecCCceeechHHHHHHHHHcCCEeeeecceEEc
Confidence 3478999999999999998765432111 2345555556899999999999999999 4566
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHH---HhC--CCCCCCcHHHHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKM---IED--GKVGGGMIPKVNCCI 321 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l---~~~--~~vtGGM~~Kv~aA~ 321 (358)
.+..+.++++|.++.+||..|++|+++|+|||||||+.+ |++.++....++++.+ ... .++||||..|++++.
T Consensus 140 ~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~--p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~ 217 (252)
T COG1608 140 DDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRD--PGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALL 217 (252)
T ss_pred CCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecCC--CCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHH
Confidence 666788999999999999999999999999999999983 4433333333444442 222 379999999999999
Q ss_pred HHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 322 RSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 322 ~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+..+.+.+ |+|+||+.|++| .+++.|+.+||.|.+
T Consensus 218 ~~~~~~~~-vyi~ng~~~~ni-~~~l~G~~vGT~I~~ 252 (252)
T COG1608 218 EIARYGKE-VYIFNGNKPENI-YRALRGENVGTRIDG 252 (252)
T ss_pred HHHhcCce-EEEECCCCHHHH-HHHhcCCCCceEecC
Confidence 99888988 999999999997 678899999999975
No 25
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=100.00 E-value=2.9e-34 Score=269.79 Aligned_cols=239 Identities=23% Similarity=0.318 Sum_probs=176.2
Q ss_pred eEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSM 171 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~ 171 (358)
++||||||+++++++. ...+.++++.|+.++..|+++||||||+...+ ...+++...+ ......+.+..
T Consensus 1 ~iViK~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g--~~~~~~~~~~------~~~~~~~~~~~ 72 (251)
T cd04242 1 RIVVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAG--RQRLGLEKRP------KTLPEKQALAA 72 (251)
T ss_pred CEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhC--hhhhccCcCC------CchhHHHHHHH
Confidence 5899999999999752 23457889999999888999999998643322 2234443321 01111222222
Q ss_pred HHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccCCCCC
Q 018330 172 VLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AADEFGQ 250 (358)
Q Consensus 172 vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~~~G~ 250 (358)
+....++..+...|+++|+++. +++.+.. +|.. ........+.|+.+|+.|+|||+++. ... .++
T Consensus 73 ~Gq~~l~~~~~~~l~~~Gi~~~-------q~l~t~~-----~~~~-~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~-~~~ 138 (251)
T cd04242 73 VGQSLLMALYEQLFAQYGIKVA-------QILLTRD-----DFED-RKRYLNARNTLETLLELGVIPIINENDTVA-TEE 138 (251)
T ss_pred HhHHHHHHHHHHHHHHcCCeEE-------EEEEehh-----Hhcc-hHHHHHHHHHHHHHHHCCCEEEEcCCCCee-eec
Confidence 2234677789999999999973 3333221 1211 11111236889999999999999972 221 233
Q ss_pred ccccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-ccccccc--HHHHHHHH---hCCCCCCCcHHHHHHHHH
Q 018330 251 SYNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEID--IKGVKKMI---EDGKVGGGMIPKVNCCIR 322 (358)
Q Consensus 251 ~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~--~~e~~~l~---~~~~vtGGM~~Kv~aA~~ 322 (358)
..++|+|++|+++|.+|+|++|+|+|||||||+++|+ |+ ++|++|+ ++|+.+++ ..++++|||.+|+++|..
T Consensus 139 ~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~ 218 (251)
T cd04242 139 IRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARI 218 (251)
T ss_pred cccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHH
Confidence 5677999999999999999999999999999998653 33 6999999 89999884 345789999999999999
Q ss_pred HHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 323 SLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 323 al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.+.|++ ++|+||+.|+.| .++|+|++.||+|.
T Consensus 219 a~~~gi~-v~I~~g~~~~~i-~~~l~g~~~GT~i~ 251 (251)
T cd04242 219 ATEAGIP-VVIANGRKPDVL-LDILAGEAVGTLFL 251 (251)
T ss_pred HHHCCCc-EEEEcCCCCCHH-HHHHcCCCCCeEeC
Confidence 9999998 999999999886 67889989999984
No 26
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=7.4e-34 Score=280.78 Aligned_cols=241 Identities=23% Similarity=0.337 Sum_probs=183.0
Q ss_pred CeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
+++||||||+++++++. +..+..++++|+.++..|+++||||||+ +...+..+++...+ .+++..+ .+.
T Consensus 9 ~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGa--i~~g~~~l~l~~~~---~~~~~~q---a~a 80 (372)
T PRK05429 9 RRIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGA--VAAGRERLGLPERP---KTLAEKQ---AAA 80 (372)
T ss_pred CEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccH--hhhhHhhcCCCCCC---CchHHHH---HHH
Confidence 78999999999998642 3455789999999999999999999885 33344567765432 1222223 333
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecC-HHHHHHHHhCCCeEEEcCCccCCCC
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVD-PTVIEPLVNSGHIPVIASVAADEFG 249 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~-~~~I~~lL~~G~IPVi~gv~~~~~G 249 (358)
.+....++..|.+.|+++|+++..+ +.++. |+ ..+.+.++ .+.|..||+.|.|||+++...-...
T Consensus 81 avGq~~L~~~~~~~l~~~gi~~~qi-------l~t~~-----d~--~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~ 146 (372)
T PRK05429 81 AVGQSRLMQAYEELFARYGITVAQI-------LLTRD-----DL--EDRERYLNARNTLRTLLELGVVPIINENDTVATD 146 (372)
T ss_pred HHhHHHHHHHHHHHHHHCCCCEEEE-------Eeehh-----Hh--hhhhHhhhHHHHHHHHHHCCCEEEEcCCCcccee
Confidence 3334678889999999999998553 22221 11 11112334 6889999999999999962111122
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccH--HHHHHHHh---CCCCCCCcHHHHHHHH
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDI--KGVKKMIE---DGKVGGGMIPKVNCCI 321 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~--~e~~~l~~---~~~vtGGM~~Kv~aA~ 321 (358)
+..++|+|++|+++|.+|+|++|+|+|||||||+++|+ |+ ++|+++++ +|+++++. .+.++|||.+|+++|.
T Consensus 147 ~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~ 226 (372)
T PRK05429 147 EIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAAR 226 (372)
T ss_pred cccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHH
Confidence 35678999999999999999999999999999998653 44 69999987 67888865 3578999999999999
Q ss_pred HHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 322 RSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 322 ~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+.+.|++ ++|+||+.|+.| .++|+|++.||+|.+
T Consensus 227 ~a~~~Gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 261 (372)
T PRK05429 227 IATRAGIP-VVIASGREPDVL-LRLLAGEAVGTLFLP 261 (372)
T ss_pred HHHHCCCe-EEEEcCCCccHH-HHHhcCCCCCEEEee
Confidence 99999998 999999999976 678899899999964
No 27
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=3.1e-34 Score=282.01 Aligned_cols=239 Identities=23% Similarity=0.356 Sum_probs=187.2
Q ss_pred CeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
+++|||+||+++++.+. +..+..++++|+.|++.|+++||||||+.+++. .+++.. ++.+++..+++..+.
T Consensus 6 kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~--~~l~~~----~~~~~~~~qalaavG 79 (368)
T PRK13402 6 KRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGY--HKLGFI----DRPSVPEKQAMAAAG 79 (368)
T ss_pred cEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCc--cccCCC----CCCCccHHHHHHHhh
Confidence 79999999999997421 355678999999999999999999999987765 344432 344777777777766
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeec-CHHHHHHHHhCCCeEEEcCC-ccCCC
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARV-DPTVIEPLVNSGHIPVIASV-AADEF 248 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i-~~~~I~~lL~~G~IPVi~gv-~~~~~ 248 (358)
|+ .++..|.+.|+++|+++. |++.+.. |+ ..+-+.. -.+.+..||+.|.|||+++. ... .
T Consensus 80 q~---~l~~~~~~~f~~~g~~~a-------qvLlT~~-----d~--~~~~~y~n~~~~l~~LL~~g~IPIinenD~v~-~ 141 (368)
T PRK13402 80 QG---LLMATWSKLFLSHGFPAA-------QLLLTHG-----DL--RDRERYINIRNTINVLLERGILPIINENDAVT-T 141 (368)
T ss_pred HH---HHHHHHHHHHHHCCCeEE-------EEEEecc-----hh--hhHHHHHHHHHHHHHHHHCCcEEEEeCCCcEe-e
Confidence 65 488899999999999984 4433332 11 1110111 14799999999999999962 222 2
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccH--HHHHHHHh---CCCCCCCcHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDI--KGVKKMIE---DGKVGGGMIPKVNCC 320 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~--~e~~~l~~---~~~vtGGM~~Kv~aA 320 (358)
.+..+.|+|++|+++|.+++||.|+|+|||||||+++| +|+ ++|++|+. +|+..+.. .+..||||.+|+++|
T Consensus 142 ~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa 221 (368)
T PRK13402 142 DRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAA 221 (368)
T ss_pred cccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHH
Confidence 45667899999999999999999999999999999865 344 69999986 67777653 245799999999999
Q ss_pred HHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
..+.+.|++ ++|++|+.|+.| .+++.|+..||+|.+
T Consensus 222 ~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 257 (368)
T PRK13402 222 KIAMSHGIE-TFIGNGFTADIF-NQLLKGQNPGTYFTP 257 (368)
T ss_pred HHHHHcCCc-EEEEcCCCchHH-HHHhcCCCCceEEec
Confidence 999999999 899999999886 668888889999964
No 28
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-34 Score=271.72 Aligned_cols=241 Identities=22% Similarity=0.339 Sum_probs=197.8
Q ss_pred CeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
+++|||+|.++|++.+. ...++.++++|+.|++.|+++|||++|+..++ +..+|++. |.++-+..+.+.
T Consensus 7 ~riVvKiGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG--~~~Lg~~~------rp~~l~~kQA~A 78 (369)
T COG0263 7 RRIVVKIGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAG--RTRLGLPK------RPKTLAEKQAAA 78 (369)
T ss_pred eEEEEEECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhC--hhhcCCCC------CCcchHHHHHHH
Confidence 79999999999999742 23457899999999999999999999987665 35678775 455555555566
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecC-HHHHHHHHhCCCeEEEcCCccCCCC
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVD-PTVIEPLVNSGHIPVIASVAADEFG 249 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~-~~~I~~lL~~G~IPVi~gv~~~~~G 249 (358)
.+.+++|+..|.+.|.+||+.+ +|++.++.. + ..+.+..| .++|..||+.|.||||++...-...
T Consensus 79 AVGQ~~Lm~~y~~~f~~~g~~v-------~QiLLTr~D-----~--~~r~ry~Nar~Tl~~Ll~~gvVPIINENDtva~~ 144 (369)
T COG0263 79 AVGQVRLMQLYEELFARYGIKV-------GQILLTRDD-----F--SDRRRYLNARNTLSALLELGVVPIINENDTVATE 144 (369)
T ss_pred HhCHHHHHHHHHHHHHhcCCee-------eEEEeehhh-----h--hhHHHHHHHHHHHHHHHHCCceeeecCCCceeee
Confidence 6666789999999999999997 888776642 2 22234444 8899999999999999996544456
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccH--HHHHHHHh-C--CCCCCCcHHHHHHHH
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDI--KGVKKMIE-D--GKVGGGMIPKVNCCI 321 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~--~e~~~l~~-~--~~vtGGM~~Kv~aA~ 321 (358)
++.+.|+|++++.+|..++||.|++|||+||+|+++| +|+ ++|++++. .|++.+.. . ...||||.+|+.+|.
T Consensus 145 EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~ 224 (369)
T COG0263 145 EIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAK 224 (369)
T ss_pred eeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHH
Confidence 7899999999999999999999999999999999865 576 47777764 47777764 2 357899999999999
Q ss_pred HHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 322 RSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 322 ~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+.+.|++ +.|.+|+.|+.+ .+++.++..||+|.+
T Consensus 225 iA~~aG~~-~iI~~g~~~~~i-~~~~~~~~~GT~F~~ 259 (369)
T COG0263 225 IATRAGVP-VIIASGSKPDVI-LDALEGEAVGTLFEP 259 (369)
T ss_pred HHHHcCCc-EEEecCCCcchH-HHHHhCCCCccEEec
Confidence 99999999 999999999986 567888899999973
No 29
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=100.00 E-value=8e-34 Score=268.84 Aligned_cols=241 Identities=19% Similarity=0.251 Sum_probs=181.6
Q ss_pred CCeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEE-ECChHHHhHHHHHcCCCccccCCcccCCHHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLV-HGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLV-hGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
.+++||||||+++++++. ...+.++++.|+.++..|+++||| ||++.+++..+...+.+ .+....+.
T Consensus 9 ~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~~~---------~~~~~~~a 79 (266)
T PRK12314 9 AKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDKRP---------TSLAEKQA 79 (266)
T ss_pred CCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccccCC---------CCHHHHHH
Confidence 368999999999997641 345578999999999999999987 66677777555332221 12223444
Q ss_pred HHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC---Ccc
Q 018330 169 VSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS---VAA 245 (358)
Q Consensus 169 v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g---v~~ 245 (358)
+..+....++..|.+.|+++|+++ +|++.++. ||. ..++.....+.|+.+|+.|+|||+++ ++.
T Consensus 80 ~aa~Gq~~l~~~~~~~~~~~g~~~-------~q~llT~~-----~~~-~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~ 146 (266)
T PRK12314 80 LAAVGQPELMSLYSKFFAEYGIVV-------AQILLTRD-----DFD-SPKSRANVKNTFESLLELGILPIVNENDAVAT 146 (266)
T ss_pred HHHHhHHHHHHHHHHHHHHcCCeE-------EEEEEecc-----ccc-chHHHHHHHHHHHHHHHCCCEEEEcCCCCeee
Confidence 444445678889999999999986 56555442 221 12233445789999999999999996 334
Q ss_pred CCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccH--HHHHHHHh---CCCCCCCcHHHH
Q 018330 246 DEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDI--KGVKKMIE---DGKVGGGMIPKV 317 (358)
Q Consensus 246 ~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~--~e~~~l~~---~~~vtGGM~~Kv 317 (358)
++.+ ..+.|+|++|+++|.+|+|++|+|+|||||||+++|+ |+ ++|++|++ .+..++.. ..++||||.+|+
T Consensus 147 ~~~~-~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl 225 (266)
T PRK12314 147 DEID-TKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKL 225 (266)
T ss_pred cccc-ceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHH
Confidence 4434 3466899999999999999999999999999998654 44 57888875 44444432 234889999999
Q ss_pred HHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 318 NCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 318 ~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
++|..+.+.|++ ++|+||+.|+.| .++|+|++.||+|.+
T Consensus 226 ~aa~~a~~~gv~-v~I~~g~~~~~i-~~~l~g~~~GT~i~~ 264 (266)
T PRK12314 226 KAAKFLMEAGIK-MVLANGFNPSDI-LDFLEGESIGTLFAP 264 (266)
T ss_pred HHHHHHHHCCCe-EEEEcCCCchHH-HHHHcCCCCceEEcc
Confidence 999999999999 999999999997 678888889999975
No 30
>PTZ00489 glutamate 5-kinase; Provisional
Probab=100.00 E-value=2.1e-33 Score=265.09 Aligned_cols=239 Identities=18% Similarity=0.238 Sum_probs=178.6
Q ss_pred CCeEEEEECCcccCCCChh--HHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQKD--NLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~~--~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
.+++|||+|||++++++.+ ..+..++++++.|++ ++++||||||+...+. ..+++...+ ....+++ .
T Consensus 8 ~~riVIKlG~Svit~~~~~~~~~~~~l~~~i~~l~~-~~~vilVssGava~g~--~~~~~~~~~-----~~~~qa~---a 76 (264)
T PTZ00489 8 VKRIVVKVGSSILVDNQEIAAHRIEALCRFIADLQT-KYEVILVTSGAVAAGY--TKKEMDKSY-----VPNKQAL---A 76 (264)
T ss_pred CCEEEEEeccceeeCCCCcCHHHHHHHHHHHHHHhc-CCeEEEEecChHhcCh--hhcCCCccc-----cHHHHHH---H
Confidence 4789999999999987532 345788888998876 7999999988844332 244544211 1122333 3
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCccccee-ecCHHHHHHHHhCCCeEEEcCCccCCCC
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVA-RVDPTVIEPLVNSGHIPVIASVAADEFG 249 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~-~i~~~~I~~lL~~G~IPVi~gv~~~~~G 249 (358)
.+.+.+||..+.+.|.++|+.+ +|++.+.. |+ ..+.+ ....+.++.||+.|.|||+++.......
T Consensus 77 aiGq~~L~~~y~~~f~~~~~~~-------aqiLlt~~-----d~--~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~ 142 (264)
T PTZ00489 77 SMGQPLLMHMYYTELQKHGILC-------AQMLLAAY-----DL--DSRKRTINAHNTIEVLISHKVIPIINENDATALH 142 (264)
T ss_pred HhCHHHHHHHHHHHHHhCCCeE-------EEeeeecc-----cc--ccchhhHHHHHHHHHHHHCCCEEEECCCCCcccc
Confidence 3334469999999999999998 45544332 11 11112 2348899999999999999996544555
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-c---ccccccHHHHHHHH--hCCCCCCCcHHHHHHHH
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-S---LVKEIDIKGVKKMI--EDGKVGGGMIPKVNCCI 321 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~---lI~~I~~~e~~~l~--~~~~vtGGM~~Kv~aA~ 321 (358)
++.|.|+|.+|+.+|..++||+|+|+|||||||+++| +|+ + .|++++.+++.... ...++||||.+|+++|.
T Consensus 143 e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~ 222 (264)
T PTZ00489 143 ELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQ 222 (264)
T ss_pred eeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHH
Confidence 7888899999999999999999999999999999754 233 2 37888887764432 23568999999999999
Q ss_pred HHHHcCCCEEEEEeCCCcchHHHHHHcCC--CCceEEcC
Q 018330 322 RSLAQGVRTASIIDGRVEHSLLLEILTDA--GAGTMITG 358 (358)
Q Consensus 322 ~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~--g~GT~I~~ 358 (358)
.+.+.|++ ++|++|+.|+.| .+++.++ ..||+|.+
T Consensus 223 ~a~~~Gi~-v~I~~g~~~~~i-~~~l~g~~~~~GT~~~~ 259 (264)
T PTZ00489 223 FLLERGGK-MYLSSGFHLEKA-RDFLIGGSHEIGTLFYP 259 (264)
T ss_pred HHHHCCCC-EEEEeCCCchHH-HHHHcCCCCCCceEEee
Confidence 99999998 999999999987 5677654 38999964
No 31
>PRK12686 carbamate kinase; Reviewed
Probab=100.00 E-value=1.7e-34 Score=276.65 Aligned_cols=246 Identities=27% Similarity=0.380 Sum_probs=169.8
Q ss_pred CCeEEEEECCcccCCCCh-----hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHH-HHHcCCCccc------------
Q 018330 93 GKTIVVKYGGAAMKPNQK-----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW-LKRFGIEPVF------------ 154 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~-----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~-l~~~gi~~~~------------ 154 (358)
.+++||||||++|.+.+. .+.....+++|+.|.+.|+++||+||+||+++.. ++..+..+.+
T Consensus 2 ~~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a~ 81 (312)
T PRK12686 2 KEKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVAM 81 (312)
T ss_pred CCEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhhh
Confidence 479999999999988541 1223678999999999999999999999999954 4344444332
Q ss_pred ---cCCc------------ccCCHHHHHHHHHHHhhhhHHHHHH-------------------HHHHcCCeeEeecCCCc
Q 018330 155 ---RDGL------------RVTDANTMEIVSMVLVGRVNKSLVS-------------------LINKAGATAVGLSGMDG 200 (358)
Q Consensus 155 ---~~g~------------rvt~~~~~~~v~~vl~g~ln~~lv~-------------------~L~~~Gi~av~lsg~d~ 200 (358)
..|+ |.++.+++.+++|++ +|+...+ ...++|+....-.|..+
T Consensus 82 sqg~iGy~~~q~l~~~l~~r~~~~~v~~vvtqv~---Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~ 158 (312)
T PRK12686 82 SQGMIGYWLQNALNNELTERGIDKPVITLVTQVE---VDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGY 158 (312)
T ss_pred ccchhhHHHHHHHHHHHHhcCCCCCceEEEEEEE---ECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCe
Confidence 1122 333343444443332 1111111 11122332222222223
Q ss_pred cEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-----CccCCCCCc----cccChHHHHHHHHHHcCCCe
Q 018330 201 RLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-----VAADEFGQS----YNINADTVAGELAAALGAEK 271 (358)
Q Consensus 201 ~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-----v~~~~~G~~----~~i~sD~~Aa~lA~~L~Adk 271 (358)
..+.++|.|. +.++.+.|+.||++|+|||.++ +.. +++.. .++|+|.+|+.||.+|+||+
T Consensus 159 rrvV~sP~P~----------~ive~~~I~~Ll~~G~IpI~~GgggIPVv~-~~~~~~gv~avid~D~~Aa~LA~~L~Ad~ 227 (312)
T PRK12686 159 RRVVPSPKPQ----------EIIEHDTIRTLVDGGNIVIACGGGGIPVIR-DDNTLKGVEAVIDKDFASEKLAEQIDADL 227 (312)
T ss_pred EEeeCCCCCc----------cccCHHHHHHHHHCCCEEEEeCCCCCCeEe-cCCcEEeeecccCccHHHHHHHHHcCCCE
Confidence 3333333220 2289999999999999999874 222 23333 36799999999999999999
Q ss_pred EEEeeccccccccccccC-cccccccHHHHHHHHhCCC-CCCCcHHHHHHHHHHHHcCC-CEEEEEeCCCcchHHHHHHc
Q 018330 272 LILLTDVAGILENREDPM-SLVKEIDIKGVKKMIEDGK-VGGGMIPKVNCCIRSLAQGV-RTASIIDGRVEHSLLLEILT 348 (358)
Q Consensus 272 Li~lTDV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~-vtGGM~~Kv~aA~~al~~Gv-~~v~Ii~G~~~~~Ll~el~~ 348 (358)
|+|+|||+|||+++++|+ ++|++++.+|++.++.++. .+|||.||+++|.++++.+. .+++|++ ++.+ .+++.
T Consensus 228 LIiLTDVdGVy~~~~~p~ak~I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i-~~aL~ 303 (312)
T PRK12686 228 LIILTGVENVFINFNKPNQQKLDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQA-KEALA 303 (312)
T ss_pred EEEEeCchhhccCCCCCCCeECCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHH-HHHhC
Confidence 999999999999866666 7999999999999988765 45999999999999998754 4577776 4554 56777
Q ss_pred CCCCceEEc
Q 018330 349 DAGAGTMIT 357 (358)
Q Consensus 349 ~~g~GT~I~ 357 (358)
|+ .||+|.
T Consensus 304 G~-~GT~I~ 311 (312)
T PRK12686 304 GN-AGTHIT 311 (312)
T ss_pred CC-CCeEEe
Confidence 76 899985
No 32
>PRK12353 putative amino acid kinase; Reviewed
Probab=100.00 E-value=4.5e-33 Score=269.10 Aligned_cols=259 Identities=26% Similarity=0.325 Sum_probs=181.5
Q ss_pred cCCeEEEEECCcccCCCCh-----hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHH
Q 018330 92 RGKTIVVKYGGAAMKPNQK-----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~-----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~ 166 (358)
+.+++|||+||++|++++. .+.+..++++|+.|+..|+++|||||||++++..+...+....+.. ++++....
T Consensus 1 ~~~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~--~~~~~~~~ 78 (314)
T PRK12353 1 MMKKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKN--KVPAMPLD 78 (314)
T ss_pred CCcEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCC--CCCCchhH
Confidence 3589999999999999752 1234689999999999999999999999998776555444433221 44543322
Q ss_pred HHHHHHHhh----hhHHHHHHHHHHcCCeeEe--------ecCCCccE-EEeecCC--------------CCCCCCc-cc
Q 018330 167 EIVSMVLVG----RVNKSLVSLINKAGATAVG--------LSGMDGRL-FTARPSP--------------NSDKLGF-VG 218 (358)
Q Consensus 167 ~~v~~vl~g----~ln~~lv~~L~~~Gi~av~--------lsg~d~~l-l~a~~~~--------------~~~d~g~-~g 218 (358)
.+....++ .++..+...|..+|+...- +++.|..+ ..++|.+ .+.||.+ .+
T Consensus 79 -~~~a~~qg~l~~~l~~~~~~~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~ 157 (314)
T PRK12353 79 -VCGAMSQGYIGYHLQNALRNELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAG 157 (314)
T ss_pred -HHHHHHhHHHHHHHHHHHHHHHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCC
Confidence 22222233 4566788888888872111 12211112 2222211 0122222 12
Q ss_pred c-eee----------cCHHHHHHHHhCCCeEEEcCCc----cCCCCCc----cccChHHHHHHHHHHcCCCeEEEeeccc
Q 018330 219 E-VAR----------VDPTVIEPLVNSGHIPVIASVA----ADEFGQS----YNINADTVAGELAAALGAEKLILLTDVA 279 (358)
Q Consensus 219 ~-v~~----------i~~~~I~~lL~~G~IPVi~gv~----~~~~G~~----~~i~sD~~Aa~lA~~L~AdkLi~lTDV~ 279 (358)
+ .++ ++.+.|+.||++|.|||++|.+ .++++.. +++|+|++|+++|.+|+||+|+|+||||
T Consensus 158 ~~~r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvd 237 (314)
T PRK12353 158 RGYRRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVD 237 (314)
T ss_pred ceeEeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 2 222 6899999999999999999753 2233333 3589999999999999999999999999
Q ss_pred cccccccccC-cccccccHHHHHHHHhCC-CCCCCcHHHHHHHHHHH-HcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 280 GILENREDPM-SLVKEIDIKGVKKMIEDG-KVGGGMIPKVNCCIRSL-AQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 280 GV~~~~~dp~-~lI~~I~~~e~~~l~~~~-~vtGGM~~Kv~aA~~al-~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
|||+++++|+ ++|++++++|+++++..+ ..+|||.+|+++|.+++ +.+..+++|++ ++.+ .+++.|+ .||.|
T Consensus 238 GVy~~~~~~~a~~i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i-~~~l~g~-~GT~i 312 (314)
T PRK12353 238 KVYINFGKPNQKKLDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKA-KEALEGK-AGTVI 312 (314)
T ss_pred cccCCCCCCCCeECcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHH-HHHhCCC-CCeEe
Confidence 9999766665 699999999999988654 46799999999999999 44434499997 5665 5677777 89999
Q ss_pred cC
Q 018330 357 TG 358 (358)
Q Consensus 357 ~~ 358 (358)
.+
T Consensus 313 ~~ 314 (314)
T PRK12353 313 VK 314 (314)
T ss_pred cC
Confidence 75
No 33
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=100.00 E-value=5.4e-33 Score=259.30 Aligned_cols=229 Identities=21% Similarity=0.268 Sum_probs=189.2
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHHh
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLV 174 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl~ 174 (358)
+||||||+++.+ ++..++++++|+.++..|+++|||||| |+.++.+++..+....+ .+.+.++++..+..
T Consensus 2 iViK~GGs~l~~---~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~------~~~~~~~~i~~~Ge 72 (239)
T cd04246 2 IVQKFGGTSVAD---IERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPR------PSPRELDMLLSTGE 72 (239)
T ss_pred EEEEECccccCC---HHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccC------CCHHHHHHHHHHhH
Confidence 799999999999 777789999999998889999999995 77888887766554322 14556776644322
Q ss_pred hhhHH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccCCCCCcc
Q 018330 175 GRVNK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AADEFGQSY 252 (358)
Q Consensus 175 g~ln~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~~~G~~~ 252 (358)
.+|. .+++.|+++|++++++++.+..+++..+.. .|++..++.+.+.+++++|.|||++|+ +.+++|+++
T Consensus 73 -~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~-------~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~ 144 (239)
T cd04246 73 -QISAALLAMALNRLGIKAISLTGWQAGILTDDHHG-------NARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEIT 144 (239)
T ss_pred -HHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCC-------ceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEE
Confidence 3454 589999999999999999988888765432 467778889999999999999999995 778899999
Q ss_pred cc---ChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHc
Q 018330 253 NI---NADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQ 326 (358)
Q Consensus 253 ~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~ 326 (358)
++ |+|++|+.+|.+|+|++|+|+|||||||+++| +|+ ++|++|+++|+++++.. |.+..|..++..+.+.
T Consensus 145 ~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~----G~~~~~~~a~~~a~~~ 220 (239)
T cd04246 145 TLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASL----GAKVLHPRSVELAKKY 220 (239)
T ss_pred ecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHhC----CCcccCHHHHHHHHHC
Confidence 98 89999999999999999999999999998754 233 69999999999998754 5677888899999999
Q ss_pred CCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 327 GVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 327 Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
|++ ++|.|++.| + .||+|+
T Consensus 221 gi~-i~i~~~~~~----------~-~gt~i~ 239 (239)
T cd04246 221 NVP-LRVRSSFSE----------N-PGTLIT 239 (239)
T ss_pred CCe-EEEecCCCC----------C-CCcEeC
Confidence 999 999998665 3 588874
No 34
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=100.00 E-value=9.5e-33 Score=257.68 Aligned_cols=230 Identities=23% Similarity=0.323 Sum_probs=187.8
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVL 173 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl 173 (358)
.+||||||+++.+ ++.+.+++++|..++..|+++|||||| |..++.+++...... +.++..+++++...
T Consensus 1 ~iViK~GGs~l~~---~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~------~~~~~~~~~~i~a~- 70 (239)
T cd04261 1 LIVQKFGGTSVAS---IERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEIS------PRPPARELDVLLST- 70 (239)
T ss_pred CEEEEECCcccCC---HHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhc------cCCCHHHHHHHHHH-
Confidence 3799999999998 777789999999998899999999998 666666654321111 34566667665332
Q ss_pred hhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccCCCCCc
Q 018330 174 VGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AADEFGQS 251 (358)
Q Consensus 174 ~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~~~G~~ 251 (358)
...+|.. +.+.|+++|++++++++.+..+++...+. .|++..++.+.++.+++.|.|||++|+ +.+++|++
T Consensus 71 Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~-------~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~ 143 (239)
T cd04261 71 GEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHG-------KARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDI 143 (239)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCC-------cceechhhHHHHHHHHHcCCeEEEcCccccCCCCCE
Confidence 2356665 78899999999999999998888765421 567777889999999999999999996 78899999
Q ss_pred ccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 018330 252 YNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLA 325 (358)
Q Consensus 252 ~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~ 325 (358)
+++ |+|++|+.+|.+|+|++|+++|||||||+++|+ |+ ++|++|+++|+++++.. |.+..|..++..+.+
T Consensus 144 ~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~----G~~~~~~~a~~~~~~ 219 (239)
T cd04261 144 TTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASL----GAKVLHPRSVELAKK 219 (239)
T ss_pred EecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhc----cccccCHHHHHHHHH
Confidence 999 999999999999999999999999999987542 33 69999999999998753 557788889888889
Q ss_pred cCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 326 QGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 326 ~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.|++ ++|.|+..| + .||+|+
T Consensus 220 ~~i~-i~I~n~~~~----------~-~gt~i~ 239 (239)
T cd04261 220 YGVP-LRVLSSFSE----------E-PGTLIT 239 (239)
T ss_pred cCCe-EEEecCCCC----------C-CCcEeC
Confidence 9999 999998765 3 688874
No 35
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=100.00 E-value=5e-33 Score=273.96 Aligned_cols=240 Identities=20% Similarity=0.311 Sum_probs=178.3
Q ss_pred CeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
+++|||+||+++++++. ...+..++++|+.++..|+++|||||||... .+..++++.... ++...+++..
T Consensus 1 ~riVIKiGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~~~--g~~~lg~~~~~~---~l~~~qa~aa-- 73 (363)
T TIGR01027 1 QRIVVKVGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGAIAA--GFEALGLPERPK---TLAEKQALAA-- 73 (363)
T ss_pred CeEEEEeccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHHhc--CccccCCCCCcc---chHHHHHHHH--
Confidence 47999999999999653 2345788999999999999999999998543 234455553211 1222333333
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecC-HHHHHHHHhCCCeEEEcC-CccCCC
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVD-PTVIEPLVNSGHIPVIAS-VAADEF 248 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~-~~~I~~lL~~G~IPVi~g-v~~~~~ 248 (358)
+.+..++..+.+.|.++|+++ +|++.++. |+ ..+.+..+ .+.|..||++|.|||+++ .... .
T Consensus 74 -~Gq~~l~~~~~~~l~~~Gi~~-------aqillt~~-----d~--~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~-~ 137 (363)
T TIGR01027 74 -VGQVRLMQLYEQLFSQYGIKV-------AQILLTRA-----DF--SDRERYLNARNTLEALLELGVVPIINENDTVA-T 137 (363)
T ss_pred -hChHHHHHHHHHHHHHcCCeE-------EEEEEecc-----ch--hhHHHHHHHHHHHHHHHhCCCEEEEeCCCcee-e
Confidence 333467889999999999997 44443332 11 11112333 488999999999999995 2221 1
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHH--HHHHHHh---CCCCCCCcHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIK--GVKKMIE---DGKVGGGMIPKVNCC 320 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~--e~~~l~~---~~~vtGGM~~Kv~aA 320 (358)
.+..+.|+|++|+.+|.+|+||+|+|+|||||||+++| +|+ ++|++++.. ++..+.. .++++|||.+|+++|
T Consensus 138 ~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa 217 (363)
T TIGR01027 138 EEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAA 217 (363)
T ss_pred eecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHH
Confidence 23446799999999999999999999999999999865 465 699999863 4444542 347899999999999
Q ss_pred HHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
..+.+.|++ ++|+||+.|+.| .++++|+.+||+|.+
T Consensus 218 ~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 253 (363)
T TIGR01027 218 DLATRAGVP-VIIASGSKPEKI-ADALEGAPVGTLFHA 253 (363)
T ss_pred HHHHHCCCe-EEEEeCCCccHH-HHHhcCCCCcEEEee
Confidence 999999999 999999999886 678898889999964
No 36
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=100.00 E-value=5.8e-32 Score=253.21 Aligned_cols=230 Identities=24% Similarity=0.361 Sum_probs=184.3
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEE-----CChHHHhHHHHHcCCCccccCCcccCCHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVH-----GGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIV 169 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVh-----Ggg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v 169 (358)
.+||||||+++++ ++..++++++|+.+.+.|+++|||| |||++++..+..++.. .|++++.. .++.+
T Consensus 1 ~~ViK~GGs~l~~---~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~----~~~~~t~~-~~~~~ 72 (244)
T cd04260 1 IIVQKFGGTSVST---KERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYA----ENSDISPR-ELDLL 72 (244)
T ss_pred CEEEEECchhcCC---HHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHh----hcCCCCHH-HHHHH
Confidence 3799999999999 7667899999999988899877777 5666776655544322 24566664 56666
Q ss_pred HHHHhhhhHH--HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccC
Q 018330 170 SMVLVGRVNK--SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AAD 246 (358)
Q Consensus 170 ~~vl~g~ln~--~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~ 246 (358)
.+ .|+++. .+++.|+++|++++++++.|..+++...++ .|++..++.+.+..+|+.|.|||++|+ +.+
T Consensus 73 ~~--~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~-------~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~ 143 (244)
T cd04260 73 MS--CGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYS-------NAKIIKVNPKKILSALKEGDVVVVAGFQGVT 143 (244)
T ss_pred HH--HhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCCCC-------ceeeeccCHHHHHHHHhCCCEEEecCCcccC
Confidence 33 577766 599999999999999999999998866432 467778899999999999999999995 788
Q ss_pred CCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--c-CcccccccHHHHHHHHhCCCCCCCcHHHHHHH
Q 018330 247 EFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--P-MSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCC 320 (358)
Q Consensus 247 ~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p-~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA 320 (358)
++|+.+++ ++|++|+.+|.+|+|++++|+|||||||+++|+ | .++|++|+++|+++++..|. -..|..++
T Consensus 144 ~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~----~v~~~~a~ 219 (244)
T cd04260 144 EDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGA----KVIHPRAV 219 (244)
T ss_pred CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCc----hhcCHHHH
Confidence 89999998 699999999999999999999999999987542 3 37999999999999986532 13445566
Q ss_pred HHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
..+.+.+++ ++|.|++.| + .||+|+
T Consensus 220 ~~~~~~~i~-v~I~~~~~~----------~-~gt~i~ 244 (244)
T cd04260 220 EIAMQANIP-IRIRSTMSE----------N-PGTLIT 244 (244)
T ss_pred HHHHHcCCe-EEEecCCCC----------C-CCCEeC
Confidence 666677888 999997654 3 588874
No 37
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=100.00 E-value=6.4e-32 Score=259.74 Aligned_cols=252 Identities=24% Similarity=0.334 Sum_probs=171.5
Q ss_pred CeEEEEECCcccCCCC-h------hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHH
Q 018330 94 KTIVVKYGGAAMKPNQ-K------DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~-~------~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~ 166 (358)
|++|||+||++|.++. . .+....++++|+.|.+.|+++|||||||++++....+....+ ..+...-+
T Consensus 1 ~riViklGgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~------~~~~~~p~ 74 (310)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAAD------SEVPAMPL 74 (310)
T ss_pred CeEEEEECHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhcccccc------ccCCCCcc
Confidence 6899999999998642 1 123467899999999999999999999999986654322111 11111112
Q ss_pred HHHHHHHhhhhHHHHHHHHH----HcCCeeEeecCCCccEEEeecCC---CCC---------------------------
Q 018330 167 EIVSMVLVGRVNKSLVSLIN----KAGATAVGLSGMDGRLFTARPSP---NSD--------------------------- 212 (358)
Q Consensus 167 ~~v~~vl~g~ln~~lv~~L~----~~Gi~av~lsg~d~~ll~a~~~~---~~~--------------------------- 212 (358)
+.+....+|.+...|..+|+ ++|+.. .+...-.|++.+...+ ++.
T Consensus 75 ~~~~A~~qg~lg~~~~~~l~~~l~~~g~~~-~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~ 153 (310)
T TIGR00746 75 DVLGAMSQGMIGYMLQQALNNELPKRGMEK-PVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDA 153 (310)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHhcCCCc-cceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecC
Confidence 33333334455555555554 777532 1111113333332110 000
Q ss_pred CCCcc------cceeecCHHHHHHHHhCCCeEEEcCCc----cCCCC----CccccChHHHHHHHHHHcCCCeEEEeecc
Q 018330 213 KLGFV------GEVARVDPTVIEPLVNSGHIPVIASVA----ADEFG----QSYNINADTVAGELAAALGAEKLILLTDV 278 (358)
Q Consensus 213 d~g~~------g~v~~i~~~~I~~lL~~G~IPVi~gv~----~~~~G----~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV 278 (358)
.++|. -.+..++.+.|+.||++|.|+|.++-+ ..+++ ..+++|+|.+|+.+|.+|+||+|||+|||
T Consensus 154 ~~~~rrvv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDV 233 (310)
T TIGR00746 154 GRGWRRVVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDV 233 (310)
T ss_pred CCcceEeecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 00110 001247899999999999854444321 12333 33489999999999999999999999999
Q ss_pred ccccccccccC-cccccccHHHHHHHHhCC-CCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 279 AGILENREDPM-SLVKEIDIKGVKKMIEDG-KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 279 ~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~-~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
||||+++++|+ ++|++++.+|++++...+ ..+|||.+|+++|+++++.|+.+++|++ ++.| .+++.|+ .||+|
T Consensus 234 dGVy~~~~~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i-~~~l~G~-~GT~I 308 (310)
T TIGR00746 234 DAVYINYGKPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENA-VEALEGK-AGTRV 308 (310)
T ss_pred CceeCCCCCCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHH-HHHHCCC-CCcEE
Confidence 99999866666 699999999999998655 4579999999999999999888899997 5565 6788888 99998
Q ss_pred c
Q 018330 357 T 357 (358)
Q Consensus 357 ~ 357 (358)
.
T Consensus 309 ~ 309 (310)
T TIGR00746 309 T 309 (310)
T ss_pred e
Confidence 6
No 38
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=100.00 E-value=2.3e-31 Score=254.59 Aligned_cols=246 Identities=26% Similarity=0.358 Sum_probs=179.9
Q ss_pred CeEEEEECCcccCCCCh----h-H--HHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccc-c--CCcccCCH
Q 018330 94 KTIVVKYGGAAMKPNQK----D-N--LLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVF-R--DGLRVTDA 163 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----~-~--l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~-~--~g~rvt~~ 163 (358)
+++||+|||++|..++. + + .....++.|+.+.+.|+++||+||+|||++.++.+....... . --+.+...
T Consensus 3 ~~ivvalgGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~a 82 (313)
T PRK12454 3 KRIVIALGGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAGA 82 (313)
T ss_pred ceEEEEeChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhhh
Confidence 69999999999987431 1 1 335678899999999999999999999999776543221110 0 00222223
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHH---------------------------------------------HcCCeeEeecCC
Q 018330 164 NTMEIVSMVLVGRVNKSLVSLIN---------------------------------------------KAGATAVGLSGM 198 (358)
Q Consensus 164 ~~~~~v~~vl~g~ln~~lv~~L~---------------------------------------------~~Gi~av~lsg~ 198 (358)
.+.-.+...+. ..|...|. ++|+..+.-.|.
T Consensus 83 ~sqG~igy~l~----~al~~~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~ 158 (313)
T PRK12454 83 MTQGWIGYMIQ----QALRNELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGR 158 (313)
T ss_pred hhhHHHHHHHH----HHHHHHHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCC
Confidence 33222222211 12223333 345555555565
Q ss_pred CccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCc----cCCCCCccc----cChHHHHHHHHHHcCCC
Q 018330 199 DGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVA----ADEFGQSYN----INADTVAGELAAALGAE 270 (358)
Q Consensus 199 d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~----~~~~G~~~~----i~sD~~Aa~lA~~L~Ad 270 (358)
.++.++++|.| +..++.+.|+.||++|.|||++|.+ ++.+|+.++ +|+|.+|+.+|.+|+||
T Consensus 159 g~RrvV~SP~P----------~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD 228 (313)
T PRK12454 159 GWRRVVPSPDP----------LGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNAD 228 (313)
T ss_pred ceEEEeCCCCC----------ccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCC
Confidence 66666666654 2457899999999999999999643 566776665 57899999999999999
Q ss_pred eEEEeeccccccccccccC-cccccccHHHHHHHHhCCC-CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHc
Q 018330 271 KLILLTDVAGILENREDPM-SLVKEIDIKGVKKMIEDGK-VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILT 348 (358)
Q Consensus 271 kLi~lTDV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~-vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~ 348 (358)
+|+|+|||+|||+++++|+ ++|++++.+|+++++..+. .+|||.+|+++|+++++.|+.+++|++ ++.+ .+++.
T Consensus 229 ~LIiLTdVdGVy~~~~~p~~~~i~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i-~~aL~ 304 (313)
T PRK12454 229 IFIILTDVEKVYLNYGKPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKA-VEALE 304 (313)
T ss_pred EEEEEeCCceeeCCCCCCCCeEccccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHH-HHHHC
Confidence 9999999999999866676 6999999999999987654 569999999999999999988899986 4554 56777
Q ss_pred CCCCceEEcC
Q 018330 349 DAGAGTMITG 358 (358)
Q Consensus 349 ~~g~GT~I~~ 358 (358)
|+ .||+|.+
T Consensus 305 G~-~GT~I~~ 313 (313)
T PRK12454 305 GK-TGTRIIP 313 (313)
T ss_pred CC-CCeEeCC
Confidence 76 8999975
No 39
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=3.1e-30 Score=247.06 Aligned_cols=243 Identities=28% Similarity=0.361 Sum_probs=175.2
Q ss_pred eEEEEECCcccCCCCh-------hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccc--cCCcccCCHHH
Q 018330 95 TIVVKYGGAAMKPNQK-------DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVF--RDGLRVTDANT 165 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~-------~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~--~~g~rvt~~~~ 165 (358)
++||||||++|..++. .+.....++.|+.+.+.|++++||||+|||++.++........- ..++.+...++
T Consensus 1 rivialgGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~~ 80 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMS 80 (308)
T ss_pred CEEEEecHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcchh
Confidence 5899999999976431 12346789999999999999999999999999877653322100 12344445555
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHcCCee---------------------------------------------EeecCCCc
Q 018330 166 MEIVSMVLVGRVNKSLVSLINKAGATA---------------------------------------------VGLSGMDG 200 (358)
Q Consensus 166 ~~~v~~vl~g~ln~~lv~~L~~~Gi~a---------------------------------------------v~lsg~d~ 200 (358)
+-.+..++ ...|...|.++|++. +.-.+..+
T Consensus 81 ~G~ig~~~----~~al~~~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~ 156 (308)
T cd04235 81 QGMIGYML----QQALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGY 156 (308)
T ss_pred hHHHHHHH----HHHHHHHHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCc
Confidence 44443332 234555666666542 11111112
Q ss_pred cEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-----CccCCCCCc----cccChHHHHHHHHHHcCCCe
Q 018330 201 RLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-----VAADEFGQS----YNINADTVAGELAAALGAEK 271 (358)
Q Consensus 201 ~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-----v~~~~~G~~----~~i~sD~~Aa~lA~~L~Adk 271 (358)
+.++++|.| +..++.+.|+.||++|+|||++| +..+ ++.. .++|+|++|+++|.+|+||+
T Consensus 157 rrvV~SP~P----------~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~-~~~~~gveaVid~D~~AallA~~l~Ad~ 225 (308)
T cd04235 157 RRVVPSPKP----------KDIVEIEAIKTLVDNGVIVIAAGGGGIPVVRE-GGGLKGVEAVIDKDLASALLAEEINADL 225 (308)
T ss_pred eeeeCCCCC----------ccccCHHHHHHHHHCCCEEEEECCCccCEEEc-CCceeeeeeccCccHHHHHHHHHcCCCE
Confidence 333333332 13467899999999999999995 3333 2433 35799999999999999999
Q ss_pred EEEeeccccccccccccC-cccccccHHHHHHHHhCCC-CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcC
Q 018330 272 LILLTDVAGILENREDPM-SLVKEIDIKGVKKMIEDGK-VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTD 349 (358)
Q Consensus 272 Li~lTDV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~-vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~ 349 (358)
|+|+|||||||+++++|+ ++|++++++|+.+++.++. .+|||.+|+++|+++++.|..+++|.+ ++.+ .+++.|
T Consensus 226 LiilTdVdGVy~~~~~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i-~~aL~G 301 (308)
T cd04235 226 LVILTDVDNVYINFGKPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITS---LENA-EAALEG 301 (308)
T ss_pred EEEEecCCeEECCCCCCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECC---HHHH-HHHHCC
Confidence 999999999999876675 6999999999999987664 579999999999999999767788876 5555 567777
Q ss_pred CCCceEEc
Q 018330 350 AGAGTMIT 357 (358)
Q Consensus 350 ~g~GT~I~ 357 (358)
+ .||+|.
T Consensus 302 ~-~GT~I~ 308 (308)
T cd04235 302 K-AGTVIV 308 (308)
T ss_pred C-CCeEEC
Confidence 6 899984
No 40
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.97 E-value=1.9e-29 Score=234.26 Aligned_cols=222 Identities=19% Similarity=0.296 Sum_probs=165.9
Q ss_pred CeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHH-cCCCccccCCcccCCHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKR-FGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~-~gi~~~~~~g~rvt~~~~~~~ 168 (358)
+++||||||+++++++ ..+.+.+++++|+.++..|+++|||||||++++.+... .+++ ...++.
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~~~~~~-----------~~~~~~ 69 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGMD-----------RATADY 69 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHhhcCCC-----------hhhHHH
Confidence 4799999999999643 24556789999999988899999999999888765421 2221 123444
Q ss_pred HHHHHhhhhHH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCC
Q 018330 169 VSMVLVGRVNK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247 (358)
Q Consensus 169 v~~vl~g~ln~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~ 247 (358)
+.+ +..++|. .+.+.|+++|+++.-+++ .. +++.+. ....+.+..+|++|.|||+++..
T Consensus 70 ~~~-~~~~l~~~ll~~~l~~~Gi~a~~~~~--------~~------~~~~~~--~~~~~~~~~~l~~g~vPVv~g~~--- 129 (231)
T PRK00358 70 MGM-LATVMNALALQDALERAGVDTRVQSA--------IP------MPQVAE--PYIRRRAIRHLEKGRVVIFAAGT--- 129 (231)
T ss_pred HHH-HHHHHHHHHHHHHHHHcCCCeEEech--------hh------cccccC--cccHHHHHHHHHCCCEEEEECCC---
Confidence 444 3567888 588899999998753322 11 111121 12356788999999999998631
Q ss_pred CCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 018330 248 FGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSL 324 (358)
Q Consensus 248 ~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al 324 (358)
|.. +.++|++|+++|.+|+|++|+|+|||||||+++| +|+ ++|++|+++|+.++ |....++.++..+.
T Consensus 130 -~~~-~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~d~~a~~~a~ 200 (231)
T PRK00358 130 -GNP-FFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEK-------GLKVMDATAISLAR 200 (231)
T ss_pred -CCC-CCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHc-------CCcchhHHHHHHHH
Confidence 222 4589999999999999999999999999999754 244 69999999886654 33445777777777
Q ss_pred HcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 325 AQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 325 ~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.|++ ++|+||+.|+.| .++++|+..||+|.
T Consensus 201 ~~~i~-v~I~~g~~~~~l-~~~l~g~~~GT~i~ 231 (231)
T PRK00358 201 DNKIP-IIVFNMNKPGNL-KRVVKGEHIGTLVS 231 (231)
T ss_pred HcCCc-EEEECCCCchHH-HHHHCCCCCCEEeC
Confidence 88998 999999999997 66888888999984
No 41
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.97 E-value=4.6e-30 Score=237.88 Aligned_cols=217 Identities=21% Similarity=0.295 Sum_probs=174.3
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHHh
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLV 174 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl~ 174 (358)
++|+||||+++.+ ++.+..++++|..+ ..|+++||||||+..++..+..+. .++..
T Consensus 1 ~iViK~GGs~l~~---~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~--------------------~~~s~ 56 (227)
T cd04234 1 MVVQKFGGTSVAS---AERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA--------------------LLLSF 56 (227)
T ss_pred CEEEEECccccCC---HHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH--------------------HHHHH
Confidence 4799999999999 76778999999998 889999999999887766655432 12223
Q ss_pred hh-hHH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhC-CCeEEEcC-CccCCCCC
Q 018330 175 GR-VNK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNS-GHIPVIAS-VAADEFGQ 250 (358)
Q Consensus 175 g~-ln~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~-G~IPVi~g-v~~~~~G~ 250 (358)
|+ +|. .+.+.|+++|+++.++++.+..+.... +++++++..++.+.++.+++. |.|||++| ++.+++|+
T Consensus 57 Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~ 129 (227)
T cd04234 57 GERLSARLLAAALRDRGIKARSLDARQAGITTDD-------NHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGE 129 (227)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCC-------ccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCC
Confidence 33 344 468899999999999998776665432 335667777889999999999 99999999 67888899
Q ss_pred cccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--c-CcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 018330 251 SYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--P-MSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSL 324 (358)
Q Consensus 251 ~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p-~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al 324 (358)
++++ ++|++|+.+|.+|+|++|+|+|||||||+.+|. | .++|++++++|+++++..| .+.| +.+++..+.
T Consensus 130 ~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~G--~~~~--~~~a~~~a~ 205 (227)
T cd04234 130 ITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAYFG--AKVL--HPRAVEPAR 205 (227)
T ss_pred EEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHHhCC--cccc--CHHHHHHHH
Confidence 8887 799999999999999999999999999986542 3 3699999999999997653 3445 556777777
Q ss_pred HcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 325 AQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 325 ~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.|++ ++|.|+..|+ ..||+|.
T Consensus 206 ~~~i~-i~i~~~~~~~----------~~gT~I~ 227 (227)
T cd04234 206 KANIP-IRVKNTFNPE----------APGTLIT 227 (227)
T ss_pred HcCCe-EEEEeCCCCC----------CCCCEeC
Confidence 88998 9999988764 2489874
No 42
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.97 E-value=1.7e-30 Score=234.35 Aligned_cols=247 Identities=23% Similarity=0.296 Sum_probs=185.4
Q ss_pred CeEEEEECCcccCCCCh--hH--HHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCC--CccccCCcccCC-HHHH
Q 018330 94 KTIVVKYGGAAMKPNQK--DN--LLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGI--EPVFRDGLRVTD-ANTM 166 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~--~~--l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi--~~~~~~g~rvt~-~~~~ 166 (358)
+++|||+|.+++++++. +. .+..+++++++|+..|++++||.+||.+.+....++.+ ...+.+-++..+ -...
T Consensus 10 ~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~~~l~e~ 89 (285)
T KOG1154|consen 10 YRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQSELAEK 89 (285)
T ss_pred eEEEEEecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhhhHHHhhhhhccchhHHHhhCCccchhhH
Confidence 69999999999999762 11 23689999999999999999999999877643222222 223322222211 1112
Q ss_pred HHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccce-eecCHHHHHHHHhCCCeEEEcCC-c
Q 018330 167 EIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEV-ARVDPTVIEPLVNSGHIPVIASV-A 244 (358)
Q Consensus 167 ~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v-~~i~~~~I~~lL~~G~IPVi~gv-~ 244 (358)
+.+..+.++.|+..|..+|.|+|+.. +|++.+++... .+- +..-.++|.+||..|.|||++.. +
T Consensus 90 rA~AAvGQ~~Lmalye~lF~Qy~~~i-------AQvLvT~~Di~-------d~~~r~Nl~~Ti~eLL~m~viPIvNeNDa 155 (285)
T KOG1154|consen 90 RACAAVGQSGLMALYETLFTQYGITI-------AQVLVTRNDIL-------DEQQRKNLQNTISELLSMNVIPIVNENDA 155 (285)
T ss_pred HHHHHhCcchHHHHHHHHHHHhccch-------heeeecCcchh-------hHHHHHHHHHHHHHHHhCCceeeecCCCc
Confidence 33445566789999999999999997 78888876321 111 23347899999999999999984 3
Q ss_pred cCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cCcccccccHHHHHHHHh----CCCCCCCcHH
Q 018330 245 ADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PMSLVKEIDIKGVKKMIE----DGKVGGGMIP 315 (358)
Q Consensus 245 ~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~~lI~~I~~~e~~~l~~----~~~vtGGM~~ 315 (358)
.+. -++.+. |+|++|+.+|..++||.||++|||+|+|++||| |..+|+..+..+-..-.. +...||||..
T Consensus 156 vs~-~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~t 234 (285)
T KOG1154|consen 156 VSP-REIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDADPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMET 234 (285)
T ss_pred cCC-cccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCCcceeeeeeccCCCCCccccCccCccCcCcchh
Confidence 332 233444 599999999999999999999999999998764 446888888765442221 2347899999
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 316 KVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 316 Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
||.+|..|+..||. |.|++|..|.++ ..++.+..+||.|+
T Consensus 235 Kv~AA~~A~~~Gv~-viI~~g~~p~~I-~~iv~g~kvgt~f~ 274 (285)
T KOG1154|consen 235 KVKAAVNALNAGVS-VIITNGDAPENI-TDIVEGKKVGTFFE 274 (285)
T ss_pred hHHHHHHHhcCCce-EEEeCCCChHHH-HHHHhhhhhhhhhh
Confidence 99999999999999 999999999986 77888888999875
No 43
>PRK08210 aspartate kinase I; Reviewed
Probab=99.97 E-value=1.3e-29 Score=253.37 Aligned_cols=223 Identities=22% Similarity=0.291 Sum_probs=177.2
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEE-----CChHHHhHHHHHcCCCccccCCcccCCHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVH-----GGGPEINFWLKRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVh-----Ggg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
+++||||||+++++ ++...+++++|+.+.+.|+++|||| ||+++++..+..+..... +.++..+++.
T Consensus 2 ~~iViK~GGs~l~~---~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~-----~~~~~~~~~~ 73 (403)
T PRK08210 2 KIIVQKFGGTSVST---EERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEF-----SEISKREQDL 73 (403)
T ss_pred CeEEEeECCcccCC---HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhc-----cCCChHHHHH
Confidence 58999999999999 6667889999999999999988888 444556555544332211 2345555655
Q ss_pred HHHHHhhhhHHH--HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-cc
Q 018330 169 VSMVLVGRVNKS--LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AA 245 (358)
Q Consensus 169 v~~vl~g~ln~~--lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~ 245 (358)
+ ++.|+++.. +.+.|+++|++++++++.+..+++..... .+++..++.+.|..+++.|.|||++|+ +.
T Consensus 74 l--~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~-------~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~ 144 (403)
T PRK08210 74 L--MSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFT-------NAKIIEVNPDRILEALEEGDVVVVAGFQGV 144 (403)
T ss_pred H--HhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCC-------ceeeehhhHHHHHHHHhcCCEEEeeCeeec
Confidence 4 456888875 78999999999999999988888876432 366777889999999999999999996 78
Q ss_pred CCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--c-CcccccccHHHHHHHHhCCCCCCCcHHHHHH
Q 018330 246 DEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--P-MSLVKEIDIKGVKKMIEDGKVGGGMIPKVNC 319 (358)
Q Consensus 246 ~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p-~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~a 319 (358)
+.+|+++++ ++|++|+.+|.+|+|++++|+|||||||+.+|. | .++|++|+++|+.+++..|. -..+.++
T Consensus 145 ~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~----~v~~~~a 220 (403)
T PRK08210 145 TENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGA----KVIHPRA 220 (403)
T ss_pred CCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCc----cccCHHH
Confidence 889999888 799999999999999999999999999987542 3 36999999999999987542 2234456
Q ss_pred HHHHHHcCCCEEEEEeCCC
Q 018330 320 CIRSLAQGVRTASIIDGRV 338 (358)
Q Consensus 320 A~~al~~Gv~~v~Ii~G~~ 338 (358)
+..+.+.+++ ++|.|...
T Consensus 221 ~~~~~~~~i~-i~i~~~~~ 238 (403)
T PRK08210 221 VEIAMQANIP-LRIRSTYS 238 (403)
T ss_pred HHHHHHCCCe-EEEEecCC
Confidence 6666677888 99998764
No 44
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=4.6e-29 Score=235.52 Aligned_cols=217 Identities=22% Similarity=0.344 Sum_probs=162.4
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHH---HHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWL---KRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l---~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
..+|||+|||++++|+.+ .+..++++|+.+.. +++++||||||++++.+. ..+|++. ...+.+.
T Consensus 31 ~~~ViKiGGSvitdk~~~-~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~-----------~~~~~~~ 97 (262)
T cd04255 31 DLNVVKIGGQSIIDRGAE-AVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPT-----------GVLAKLG 97 (262)
T ss_pred CcEEEEeccceecCCcHH-HHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCc-----------hHHHHHH
Confidence 469999999999997643 45789999998865 789999999999986433 1333322 1222333
Q ss_pred HHHhhhhHHHHH-HHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCc---c-
Q 018330 171 MVLVGRVNKSLV-SLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVA---A- 245 (358)
Q Consensus 171 ~vl~g~ln~~lv-~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~---~- 245 (358)
+. +.++|..+. ++|..+|++++ ...+.+.++.+|+.|.|||++|.. .
T Consensus 98 ~a-a~~ln~lv~~~~l~~~g~~~i---------------------------~~~~~~~l~~lL~~g~vPVi~g~~~~~~~ 149 (262)
T cd04255 98 AS-VSEQNAEMLATLLAKHGGSKV---------------------------GHGDLLQLPTFLKAGRAPVISGMPPYGLW 149 (262)
T ss_pred HH-HHHHHHHHHHHHHHHcCCCcc---------------------------ccccHHHHHHHHHCCCeEEEeCCcCCCee
Confidence 33 456787766 56678887652 112345799999999999999952 1
Q ss_pred ---CCCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--cc-CcccccccHHHHHHHH-hCCCCCCCcHHHHH
Q 018330 246 ---DEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DP-MSLVKEIDIKGVKKMI-EDGKVGGGMIPKVN 318 (358)
Q Consensus 246 ---~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp-~~lI~~I~~~e~~~l~-~~~~vtGGM~~Kv~ 318 (358)
+..|+..++|+|++|+++|.+|+|++|+++|||||||+++| +| .++|++|+++|+.++. ....+++||..|++
T Consensus 150 ~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~ 229 (262)
T cd04255 150 EHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQ 229 (262)
T ss_pred eecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCCCCCcHHHHHHHH
Confidence 23455778999999999999999999999999999999754 23 3799999998888875 33345778888876
Q ss_pred HHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 319 CCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 319 aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+| .++..++|+||+.|++| .+++.++.+||+|.
T Consensus 230 aa-----~~~~~v~I~~g~~~~~L-~~~l~g~~~GT~i~ 262 (262)
T cd04255 230 NA-----RHVKEVQIVNGLVPGNL-TRALRGEHVGTIIR 262 (262)
T ss_pred Hh-----CCCCcEEEEeCCCCCHH-HHHHcCCCCceEeC
Confidence 54 23234999999999986 67888888999984
No 45
>PRK12354 carbamate kinase; Reviewed
Probab=99.97 E-value=3.8e-29 Score=238.83 Aligned_cols=243 Identities=25% Similarity=0.301 Sum_probs=164.6
Q ss_pred CeEEEEECCcccCCCCh---hH----HHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHH---HcCCCccccCCcccCCH
Q 018330 94 KTIVVKYGGAAMKPNQK---DN----LLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLK---RFGIEPVFRDGLRVTDA 163 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~---~~----l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~---~~gi~~~~~~g~rvt~~ 163 (358)
+++||||||++|.+++. .+ .....++.|+.+.+ |+++||+||+|||++.++. ++...+.+ .+.+...
T Consensus 1 ~~iVialGGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~--pl~~~~a 77 (307)
T PRK12354 1 MRIVVALGGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYKDVTPY--PLDVLGA 77 (307)
T ss_pred CeEEEEeccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhcCCCCC--Ccchhcc
Confidence 47999999999998652 11 22467888888876 9999999999999774432 22221111 1111111
Q ss_pred HH----HHHHHHHHhhhh-----H---------------------------H-HHHHHHHHcCCeeEeecCCCccEEEee
Q 018330 164 NT----MEIVSMVLVGRV-----N---------------------------K-SLVSLINKAGATAVGLSGMDGRLFTAR 206 (358)
Q Consensus 164 ~~----~~~v~~vl~g~l-----n---------------------------~-~lv~~L~~~Gi~av~lsg~d~~ll~a~ 206 (358)
.+ --.+++.+..++ + . .-.++..++|+..+.- |..++.++++
T Consensus 78 ~sqg~iGy~l~q~l~~~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~d-g~g~rrVv~S 156 (307)
T PRK12354 78 ETEGMIGYMLEQELGNLLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPD-GDYFRRVVPS 156 (307)
T ss_pred cccchHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeec-CCceEEEecC
Confidence 00 000111111111 0 0 1112223345543332 4445556655
Q ss_pred cCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEc-----CCccCCCCCcc----ccChHHHHHHHHHHcCCCeEEEeec
Q 018330 207 PSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIA-----SVAADEFGQSY----NINADTVAGELAAALGAEKLILLTD 277 (358)
Q Consensus 207 ~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~-----gv~~~~~G~~~----~i~sD~~Aa~lA~~L~AdkLi~lTD 277 (358)
|.+. ..++.+.|+.||++|+|||.+ |+..+.+++.. ++|+|.+|+.||.+|+||+|+|+||
T Consensus 157 P~P~----------~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTd 226 (307)
T PRK12354 157 PRPK----------RIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTD 226 (307)
T ss_pred CCCc----------ceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeC
Confidence 5441 357899999999999998776 44444434443 4699999999999999999999999
Q ss_pred cccccccccccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 278 VAGILENREDPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 278 V~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
|||||+++++|+ ++|++++.+|++++ +..+|||.||+++|+++++.|..+++|.+ ++.+ .++|.|+ .||+|
T Consensus 227 VdGVy~~~~~p~~k~i~~it~~e~~~~---~f~~GgM~pKV~AA~~~~~~gg~~viI~~---~~~l-~~al~G~-~GT~I 298 (307)
T PRK12354 227 VDAVYLDWGKPTQRAIAQATPDELREL---GFAAGSMGPKVEAACEFVRATGKIAGIGS---LEDI-QAILAGE-AGTRI 298 (307)
T ss_pred CcceecCCCCCCCeECCCCCHHHHHhh---CCCcCChHHHHHHHHHHHHhCCCEEEECC---HHHH-HHHHCCC-CceEE
Confidence 999999876776 69999999999988 57899999999999999998877788853 4454 6778775 89999
Q ss_pred cC
Q 018330 357 TG 358 (358)
Q Consensus 357 ~~ 358 (358)
.+
T Consensus 299 ~~ 300 (307)
T PRK12354 299 SP 300 (307)
T ss_pred ec
Confidence 63
No 46
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.97 E-value=5.5e-29 Score=230.95 Aligned_cols=221 Identities=18% Similarity=0.239 Sum_probs=165.0
Q ss_pred eEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHH-hHHHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEI-NFWLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i-~~~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
++||||||+++++++. .+.+..+++.|+.++..|+++|||||||.++ +.....+++.+. ....+.+.
T Consensus 1 ~iViKiGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~~~~~~~--------~~~~~~~~- 71 (229)
T cd04239 1 RIVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPRA--------TADYIGML- 71 (229)
T ss_pred CEEEEECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhhcCCChh--------hHHHHHHH-
Confidence 5799999999999752 2445788888888888899999999998864 443334443321 11222222
Q ss_pred HHHhhhhHHHH-HHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCC
Q 018330 171 MVLVGRVNKSL-VSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFG 249 (358)
Q Consensus 171 ~vl~g~ln~~l-v~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G 249 (358)
..++|..+ ...|.++|+++..+++.+.... ....+.+.+..+++.|.|||++|.. |
T Consensus 72 ---~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~----------------~~~~~~~~l~~~l~~g~ipVi~g~~----g 128 (229)
T cd04239 72 ---ATVMNALALQDALEKLGVKTRVMSAIPMQGV----------------AEPYIRRRAIRHLEKGRIVIFGGGT----G 128 (229)
T ss_pred ---HHHHHHHHHHHHHHHcCCCEEEeCHHHHhhh----------------hccccHHHHHHHHhCCCEEEEeCcc----C
Confidence 33567765 5678999999987765332110 0223678899999999999999964 3
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHc
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQ 326 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~ 326 (358)
. .+.++|++|+++|.+|+|++|+|+|||||||+++|+ |+ ++|++|+++|+.++.. |..++.++..+.+.
T Consensus 129 ~-~~~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~-------~~~~~~a~~~~~~~ 200 (229)
T cd04239 129 N-PGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL-------KVMDATALTLCRRN 200 (229)
T ss_pred C-CCCCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhc-------CCccHHHHHHHHHC
Confidence 3 245899999999999999999999999999988542 33 6999999999888742 44455566566778
Q ss_pred CCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 327 GVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 327 Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
|++ ++|+||+.|+.| .+++++++.||+|.
T Consensus 201 ~i~-v~I~~g~~~~~l-~~~l~g~~~GT~i~ 229 (229)
T cd04239 201 KIP-IIVFNGLKPGNL-LRALKGEHVGTLIE 229 (229)
T ss_pred CCe-EEEECCCChhHH-HHHHcCCCCCeEeC
Confidence 887 999999999996 67888888999984
No 47
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.97 E-value=4.3e-29 Score=231.99 Aligned_cols=222 Identities=18% Similarity=0.262 Sum_probs=166.4
Q ss_pred CeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHH-hHHHHHcCCCccccCCcccCCHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEI-NFWLKRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i-~~~l~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
|++||||||+++++|+ ..+.+.++++.|+.+...|+++|||||||+++ +....+++.. +.+. +.
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~~~~~~~-------~~~~----d~ 69 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMD-------RATA----DY 69 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchhhhcCCC-------chhh----hH
Confidence 5799999999999875 23455788999998888899999999999874 2222333332 2222 22
Q ss_pred HHHHHhhhhHH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCC
Q 018330 169 VSMVLVGRVNK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247 (358)
Q Consensus 169 v~~vl~g~ln~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~ 247 (358)
+.+ +..++|. .+++.|+++|+++..+++.+.+ +.+ ..++.+.++.+|+.|.|||+++.
T Consensus 70 ~g~-~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~--------------~~~--~~~~~~~l~~~l~~g~ipV~~g~---- 128 (231)
T cd04254 70 MGM-LATVINALALQDALESLGVKTRVMSAIPMQ--------------GVA--EPYIRRRAIRHLEKGRVVIFAGG---- 128 (231)
T ss_pred HHH-HHHHHHHHHHHHHHHHcCCCeEEEcHHHhh--------------hhh--cccCHHHHHHHHHCCCEEEEECC----
Confidence 223 3457777 5777999999999888754321 111 23578999999999999999963
Q ss_pred CCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 018330 248 FGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSL 324 (358)
Q Consensus 248 ~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al 324 (358)
.|. ..+++|++|+++|.+|+|++++|+|||||||+++|+ |+ ++|++++++|+.+. + ...-++.++..+.
T Consensus 129 ~G~-~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~---~----~~~~d~~a~~~a~ 200 (231)
T cd04254 129 TGN-PFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---G----LKVMDATAFTLCR 200 (231)
T ss_pred cCC-CCCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhc---c----hhhhHHHHHHHHH
Confidence 243 355899999999999999999999999999997543 34 69999999887653 1 1123666766667
Q ss_pred HcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 325 AQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 325 ~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.|++ ++|+||+.|++| .+++.|+.+||+|+
T Consensus 201 ~~gi~-~~I~~g~~~~~l-~~~l~g~~~GT~i~ 231 (231)
T cd04254 201 DNNLP-IVVFNINEPGNL-LKAVKGEGVGTLIS 231 (231)
T ss_pred HCCCe-EEEEeCCCccHH-HHHHCCCCCCEEeC
Confidence 78988 999999999997 56778888999985
No 48
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.97 E-value=2.5e-29 Score=266.76 Aligned_cols=251 Identities=21% Similarity=0.222 Sum_probs=183.3
Q ss_pred CCeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEE-ECChHHHhHHHHHcCCCcc-ccCCcccCCHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLV-HGGGPEINFWLKRFGIEPV-FRDGLRVTDANTME 167 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLV-hGgg~~i~~~l~~~gi~~~-~~~g~rvt~~~~~~ 167 (358)
.+++|||+||+++++++. ...+.+++++|+.|+..|+++||| ||++.+++..+..++.... +.+-.+......++
T Consensus 7 ~~~iViKiGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~~~q 86 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPELDGK 86 (715)
T ss_pred CCEEEEEeCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchHHHH
Confidence 489999999999999752 234578999999999999999995 5556666666654432211 10001223334455
Q ss_pred HHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-Ccc-
Q 018330 168 IVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAA- 245 (358)
Q Consensus 168 ~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~- 245 (358)
++..+.+..|+..+...|+++++.+ +|++.++.. |. ..+......+.|+.||+.|.|||+++ ...
T Consensus 87 a~aa~gq~~L~~~y~~~f~~~~i~~-------aQ~Llt~~d-----~~-~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~ 153 (715)
T TIGR01092 87 ACAAVGQSGLMALYETMFTQLDITA-------AQILVTDLD-----FR-DEQFRRQLNETVHELLRMNVVPVVNENDAVS 153 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCee-------EEEEechhh-----cc-cHHHHHHHHHHHHHHHHCCCEEEEcCCCccc
Confidence 5555556678888999999999987 566655531 11 11112346889999999999999997 221
Q ss_pred -CC----CCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc-ccC-cccccccHHHHHHHHh----CCCCCCCcH
Q 018330 246 -DE----FGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE-DPM-SLVKEIDIKGVKKMIE----DGKVGGGMI 314 (358)
Q Consensus 246 -~~----~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~-dp~-~lI~~I~~~e~~~l~~----~~~vtGGM~ 314 (358)
.+ +++-+++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++..+.+..+. ..+++|||.
T Consensus 154 ~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~ 233 (715)
T TIGR01092 154 TRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMT 233 (715)
T ss_pred ccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCCCCCCeEeeeecccchhhhhccCcccccCCCCch
Confidence 11 112248899999999999999999999999999999854 343 6899998654442222 235789999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 315 PKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 315 ~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+||++|..+.+.|++ ++|++|+.++.| .+++.|+..||.|.+
T Consensus 234 ~Kl~aa~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~~~~ 275 (715)
T TIGR01092 234 AKVKAAVWAAYGGTP-VIIASGTAPKNI-TKVVEGKKVGTLFHE 275 (715)
T ss_pred HHHHHHHHHHHCCCe-EEEeCCCCcchH-HHHhcCCCCceEecc
Confidence 999999999999998 999999999986 678888889999853
No 49
>PRK06635 aspartate kinase; Reviewed
Probab=99.97 E-value=1.4e-28 Score=246.04 Aligned_cols=222 Identities=21% Similarity=0.288 Sum_probs=175.4
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMV 172 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~v 172 (358)
+++||||||+++.+ ++.+.+++++|..++..|+++|+|||| |..++.+++...... ...+.+.++.+...
T Consensus 2 ~~iViK~GGs~l~~---~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~ 72 (404)
T PRK06635 2 ALIVQKFGGTSVGD---VERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVS------PLPDPRELDMLLST 72 (404)
T ss_pred CeEEEeECCcccCC---HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhc------cCCCHHHHHHHhhh
Confidence 57999999999999 777789999999998889999998887 667676665432111 11244555544433
Q ss_pred Hhh-hhHH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccCCCC
Q 018330 173 LVG-RVNK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAADEFG 249 (358)
Q Consensus 173 l~g-~ln~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G 249 (358)
| .+|. .+.+.|+++|++++++++.+..+++... |+ .+++..++.+.++.+++.|.|||++| ++.+++|
T Consensus 73 --Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~------~~-~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g 143 (404)
T PRK06635 73 --GEQVSVALLAMALQSLGVKARSFTGWQAGIITDSA------HG-KARITDIDPSRIREALDEGDVVVVAGFQGVDEDG 143 (404)
T ss_pred --hHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCC------CC-ceEeeecCHHHHHHHHhCCCEEEecCccEeCCCC
Confidence 4 3444 6888999999999999998888877653 22 46778889999999999999999999 5788999
Q ss_pred Ccccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 250 QSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 250 ~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
+++++ |+|++|+++|..|+|++++++|||||||+++|. |+ ++|++++++|+.+++.. |.+..+..++..+
T Consensus 144 ~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~----g~~~~~~~a~~~~ 219 (404)
T PRK06635 144 EITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASL----GAKVLHPRSVEYA 219 (404)
T ss_pred CEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHc----CCcccCHHHHHHH
Confidence 99998 999999999999999999999999999997542 33 69999999999999754 3334455566666
Q ss_pred HHcCCCEEEEEeCCC
Q 018330 324 LAQGVRTASIIDGRV 338 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~ 338 (358)
.+.|++ ++|.|+..
T Consensus 220 ~~~~i~-~~i~~~~~ 233 (404)
T PRK06635 220 KKYNVP-LRVRSSFS 233 (404)
T ss_pred HHcCce-EEEEcCCC
Confidence 667887 99998764
No 50
>PRK08841 aspartate kinase; Validated
Probab=99.96 E-value=2.5e-28 Score=242.75 Aligned_cols=222 Identities=21% Similarity=0.287 Sum_probs=179.3
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHH-HhHHHHHcCCCccccCCcccCCHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPE-INFWLKRFGIEPVFRDGLRVTDANTMEIVSMV 172 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~-i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~v 172 (358)
+++|+||||+++.+ ++.+..++++|+.+++.|.++|+||||+.. ++.++. +..... +++++..++.+...
T Consensus 2 ~~~V~KfGGtsv~~---~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~-~~~~~~-----~~~~~~~~d~l~s~ 72 (392)
T PRK08841 2 PLIVQKFGGTSVGS---IERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLG-LAKQVD-----SVPTARELDVLLSA 72 (392)
T ss_pred CeEEEeECcccCCC---HHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHH-hhhhhc-----cCCCHHHHHHHHHH
Confidence 47999999999999 777789999999998999999999999874 455443 222211 45566666665443
Q ss_pred Hhhhh--HHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccCCCC
Q 018330 173 LVGRV--NKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AADEFG 249 (358)
Q Consensus 173 l~g~l--n~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~~~G 249 (358)
|+. ...+...|++.|+++.++++.+..+++.... ..+++..++.+.+..+++.|.|||++|+ +.+++|
T Consensus 73 --GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~-------~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g 143 (392)
T PRK08841 73 --GEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQH-------NDATIKHIDTSTITELLEQDQIVIVAGFQGRNENG 143 (392)
T ss_pred --HHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCC-------CCceechhhHHHHHHHHhCCCEEEEeCCcccCCCC
Confidence 433 2346779999999999999988777765432 1366777788999999999999999994 788999
Q ss_pred Ccccc---ChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 250 QSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 250 ~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
+++++ ++|++|+.+|.+|+|++|+++|||||||+++| .|+ ++|++|+++|+.+++.. |.+.-+.+++..+
T Consensus 144 ~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~----Ga~vlhp~ai~~a 219 (392)
T PRK08841 144 DITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARK----GAKVLHLPSVQHA 219 (392)
T ss_pred CEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhc----CccccCHHHHHHH
Confidence 99988 99999999999999999999999999999854 244 69999999999999763 5667777888888
Q ss_pred HHcCCCEEEEEeCCC
Q 018330 324 LAQGVRTASIIDGRV 338 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~ 338 (358)
.+.|++ ++|.|+..
T Consensus 220 ~~~~Ip-i~i~n~~~ 233 (392)
T PRK08841 220 WKHSVP-LRVLSSFE 233 (392)
T ss_pred HHCCCe-EEEEecCC
Confidence 999999 99998754
No 51
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.96 E-value=3.9e-28 Score=225.57 Aligned_cols=222 Identities=21% Similarity=0.253 Sum_probs=162.8
Q ss_pred CeEEEEECCcccCCCCh----hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIV 169 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v 169 (358)
+++|||+|||++++|+. .+.+..++++|+.+++.|+++|||||||.+.+-. ...++ ++ ...+.+
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~-~~~~~----------~~-~~~d~i 68 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGV-ELKEL----------SP-TRADQI 68 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHH-hccCC----------Ch-HHHHHH
Confidence 57999999999998742 2445789999999988899999999999874411 11111 11 122222
Q ss_pred HHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCC
Q 018330 170 SMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEF 248 (358)
Q Consensus 170 ~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~ 248 (358)
.+. .-++|.. +.+.|.++|++++.++. ++. .+ .+.....+.+..+|+.|.|||++|..
T Consensus 69 g~~-~~~ln~~~~~~~l~~~gi~a~~~~~----~~~-~~-----------~~~~~~~~~i~~ll~~g~vpV~~G~~---- 127 (231)
T PRK14558 69 GML-GTVINALYLKDIFEKSGLKAVIVSQ----IVN-LP-----------SVEPINYDDIELYFRAGYIVIFAGGT---- 127 (231)
T ss_pred HHH-HHHHHHHHHHHHHHHcCCCeEEecc----ccc-cc-----------hhhhhhHHHHHHHHHCCCEEEEECCC----
Confidence 221 2346764 68899999999988763 221 11 11234578999999999999999952
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLA 325 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~ 325 (358)
| ..++++|++|+.+|..|+|++++++|||||||+++| +|+ ++|++|+++|+.++ + ...| +..++.-+.+
T Consensus 128 ~-~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~---g--~~~~--d~~a~~~a~~ 199 (231)
T PRK14558 128 S-NPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---G--LKVM--DTEAFSICKK 199 (231)
T ss_pred C-CCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc---C--cccc--cHHHHHHHHH
Confidence 2 335689999999999999999999999999999864 354 69999999888775 1 1223 2345555567
Q ss_pred cCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 326 QGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 326 ~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.|++ ++|+||.+|+.| ..++.|+..||+|.+
T Consensus 200 ~gi~-v~I~ng~~~~~l-~~~l~g~~~GT~i~~ 230 (231)
T PRK14558 200 YGIT-ILVINFFEPGNL-LKALKGENVGTLVVP 230 (231)
T ss_pred CCCC-EEEEeCCCCCHH-HHHHCCCCCcEEeCC
Confidence 7999 999999999997 567788889999975
No 52
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.96 E-value=1.8e-28 Score=244.96 Aligned_cols=225 Identities=20% Similarity=0.252 Sum_probs=180.6
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVL 173 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl 173 (358)
+++|+||||+++.+ ++.+.+++++|+.++..|+++|+||||+..++..+.+++... + ..++++.+...++.+
T Consensus 1 ~~iViK~GGs~~~~---~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~-~--~~~~~~~~~~~i~~~-- 72 (401)
T TIGR00656 1 ELIVQKFGGTSVGS---GERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKA-I--RDAITPRERDELVSH-- 72 (401)
T ss_pred CcEEEEECCcCcCC---HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHH-h--ccCCChHHHHHHhhH--
Confidence 36899999999999 777789999999998899999999999888877665543210 0 014555555554444
Q ss_pred hhh-h-HHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCH-HHHHHHHhCCCeEEEcC-CccCCCC
Q 018330 174 VGR-V-NKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDP-TVIEPLVNSGHIPVIAS-VAADEFG 249 (358)
Q Consensus 174 ~g~-l-n~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~-~~I~~lL~~G~IPVi~g-v~~~~~G 249 (358)
|+ + +..++..|+++|++++++++.+..+++..... .+++..++. +.+..+++.|.|||++| ++.+.+|
T Consensus 73 -Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~-------~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g 144 (401)
T TIGR00656 73 -GERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFG-------NAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKG 144 (401)
T ss_pred -HHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCC-------ceEeeecchHHHHHHHHhCCCEEEecCcceeCCCC
Confidence 33 4 56789999999999999999999888866432 245667777 99999999999999999 6788889
Q ss_pred Ccccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 250 QSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 250 ~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
+++++ ++|++|+.+|.+|+|++|+++|||||||+++|. |+ ++|++++++|+.+++.. |....+.++..-+
T Consensus 145 ~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~----G~~v~~~~a~~~a 220 (401)
T TIGR00656 145 YTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATF----GAKVLHPRTVEPA 220 (401)
T ss_pred CEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHc----CCcccCHHHHHHH
Confidence 98887 699999999999999999999999999987542 34 69999999999999764 3345566677777
Q ss_pred HHcCCCEEEEEeCCCc
Q 018330 324 LAQGVRTASIIDGRVE 339 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~ 339 (358)
.+.+++ ++|.|+..|
T Consensus 221 ~~~~i~-i~i~~~~~~ 235 (401)
T TIGR00656 221 MRSGVP-IEVRSSFDP 235 (401)
T ss_pred HHCCCe-EEEEECCCC
Confidence 888999 999998776
No 53
>PRK09411 carbamate kinase; Reviewed
Probab=99.96 E-value=2.6e-28 Score=231.40 Aligned_cols=237 Identities=26% Similarity=0.331 Sum_probs=168.6
Q ss_pred CeEEEEECCcccCCCCh----h-H--HHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK----D-N--LLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----~-~--l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~ 166 (358)
+++||-+||++|..++. + + .....++.|+.|.+. +++||+||.|||++.++.+...... . ...-|
T Consensus 2 ~~iVvAlGGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~~~------~-~~~pl 73 (297)
T PRK09411 2 KTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAWKE------V-EPYPL 73 (297)
T ss_pred CeEEEEcCchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhhcC------C-CCCCc
Confidence 58999999999987431 1 1 224568888888877 9999999999999987655322111 0 00001
Q ss_pred HHHHHHHhhhhHHHHHHHHHHcC---------------------------------------------CeeEeecCCCcc
Q 018330 167 EIVSMVLVGRVNKSLVSLINKAG---------------------------------------------ATAVGLSGMDGR 201 (358)
Q Consensus 167 ~~v~~vl~g~ln~~lv~~L~~~G---------------------------------------------i~av~lsg~d~~ 201 (358)
+.+..--+|.+-..+.++|...| +..+.- |..++
T Consensus 74 d~~~a~sqG~iGy~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~d-g~g~r 152 (297)
T PRK09411 74 DVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRD-GKYLR 152 (297)
T ss_pred hhhhhhcccHHHHHHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEec-CCceE
Confidence 11110002333334444444443 322221 33333
Q ss_pred EEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEc-----CCccCCCCCccccChHHHHHHHHHHcCCCeEEEee
Q 018330 202 LFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIA-----SVAADEFGQSYNINADTVAGELAAALGAEKLILLT 276 (358)
Q Consensus 202 ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~-----gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lT 276 (358)
.++++|.| +..++.+.|+.||++|+|||.+ |+..+.+|...|+|+|.+|+.||.+|+||+|+|+|
T Consensus 153 rVVpSP~P----------~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLT 222 (297)
T PRK09411 153 RVVASPQP----------RKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILT 222 (297)
T ss_pred EEccCCCC----------cceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEe
Confidence 33333322 1678999999999999998888 45555568889999999999999999999999999
Q ss_pred ccccccccccccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceE
Q 018330 277 DVAGILENREDPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTM 355 (358)
Q Consensus 277 DV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~ 355 (358)
||+|||+++++|+ ++|++++.+|++.++. .+|||.||+++|+++++.+..+++|.+ ++.+ .+++.|+ .||+
T Consensus 223 DVdGV~~n~~~p~~~~I~~it~~e~~~~~~---~~GgM~pKVeAA~~~v~~~g~~a~I~~---l~~~-~~~l~G~-~GT~ 294 (297)
T PRK09411 223 DADAVYENWGTPQQRAIRHATPDELAPFAK---ADGAMGPKVTAVSGYVRSRGKPAWIGA---LSRI-EETLAGE-AGTC 294 (297)
T ss_pred CchhhccCCCCCCCcCCCCcCHHHHHHhcc---CCCCcHHHHHHHHHHHHhCCCeEEECC---hhHH-HHHHCCC-CCeE
Confidence 9999999876776 6999999999988754 689999999999999999877788865 4454 5677776 7999
Q ss_pred Ec
Q 018330 356 IT 357 (358)
Q Consensus 356 I~ 357 (358)
|.
T Consensus 295 I~ 296 (297)
T PRK09411 295 IS 296 (297)
T ss_pred Ee
Confidence 85
No 54
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.96 E-value=4.9e-28 Score=256.70 Aligned_cols=251 Identities=20% Similarity=0.258 Sum_probs=179.4
Q ss_pred CCeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHc-CCCccccCCc-ccCCHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRF-GIEPVFRDGL-RVTDANTME 167 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~-gi~~~~~~g~-rvt~~~~~~ 167 (358)
.+++|||+||+++++.+. ...+..+++.|+.+++.|+++|||.+|....+..+..+ ....+...-+ +.+.....+
T Consensus 15 ~~~iViK~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~q 94 (718)
T PLN02418 15 VKRVVIKVGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLVNSSFADLQKPQMELDGK 94 (718)
T ss_pred CCEEEEEeCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhhhcccccCCCCcchHHHH
Confidence 479999999999998541 12457899999999999999999999976655432221 1100000000 111111112
Q ss_pred HHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccC
Q 018330 168 IVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AAD 246 (358)
Q Consensus 168 ~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~ 246 (358)
.+..+....++..|...|+++|+.+ +|++.++. ||+ ..+......+.|+.||+.|.|||+++. ..+
T Consensus 95 a~aa~Gq~~l~~~~~~~f~~~g~~~-------~qillT~~-----~~~-~~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~ 161 (718)
T PLN02418 95 ACAAVGQSELMALYDTLFSQLDVTA-------SQLLVTDS-----DFR-DPDFRKQLSETVESLLDLRVIPIFNENDAVS 161 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCeE-------EEEEecHh-----Hhc-chhHhHhHHHHHHHHHHCCCEEEEcCCCCcc
Confidence 3334444567888999999999976 56655532 221 112234458999999999999999983 322
Q ss_pred -CC-----CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc-ccC-cccccccHHHHHHHHh----CCCCCCCcH
Q 018330 247 -EF-----GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE-DPM-SLVKEIDIKGVKKMIE----DGKVGGGMI 314 (358)
Q Consensus 247 -~~-----G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~-dp~-~lI~~I~~~e~~~l~~----~~~vtGGM~ 314 (358)
.. +...++|+|++|+++|.+++|++|+|+|||||||+++| +|+ ++|++++..+.+..+. ..+++|||.
T Consensus 162 ~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~ 241 (718)
T PLN02418 162 TRRAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMT 241 (718)
T ss_pred ccccccccccCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCCCCCceEcceecccchhhhhhcccccccCCCCcH
Confidence 11 23368899999999999999999999999999999854 344 6899987654433222 235799999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 315 PKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 315 ~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+|+++|..+.+.|++ ++|+||+.|+.| .++++|+..||+|.+
T Consensus 242 ~Kl~Aa~~a~~~Gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 283 (718)
T PLN02418 242 AKVKAAVNAASAGIP-VVITSGYALDNI-RKVLRGERVGTLFHQ 283 (718)
T ss_pred HHHHHHHHHHHCCCc-EEEeCCCCcchH-HHHhcCCCCceEecc
Confidence 999999999999998 999999999986 678898899999964
No 55
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.96 E-value=2.9e-27 Score=218.28 Aligned_cols=213 Identities=21% Similarity=0.299 Sum_probs=159.5
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHH---cCCCccccCCcccCCHHHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKR---FGIEPVFRDGLRVTDANTMEIVSM 171 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~---~gi~~~~~~g~rvt~~~~~~~v~~ 171 (358)
++||||||+++++++..+.+.++++.|+.+.. |+++|||||||++++.+.+. +++.. ..++.+..
T Consensus 1 ~iViKlGGs~l~~~~~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~-----------~~~d~~g~ 68 (221)
T cd04253 1 RIVISLGGSVLAPEKDADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASE-----------AFLDEIGI 68 (221)
T ss_pred CEEEEeccceeCCCCChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCH-----------HHHHHhcC
Confidence 57999999999874322344677888887654 78999999999998876543 22221 11222222
Q ss_pred HHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCc
Q 018330 172 VLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQS 251 (358)
Q Consensus 172 vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~ 251 (358)
. ..++|..+.+.+..+|++++++ +.+.+..+|+.|.|||++|...
T Consensus 69 ~-~~~ln~~~~~~~l~~~~~~~~~----------------------------~~~~~~~~l~~g~vpv~~G~~~------ 113 (221)
T cd04253 69 M-ATRLNARLLIAALGDAYPPVPT----------------------------SYEEALEAMFTGKIVVMGGTEP------ 113 (221)
T ss_pred H-HHHHHHHHHHHHHhcCCCcCCC----------------------------CHHHHHHHHHcCCeEEEECCCC------
Confidence 2 3478888877776677654321 3466788999999999999531
Q ss_pred cccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhC-CCCCCC-cHHHHHHHHHHHHc
Q 018330 252 YNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIED-GKVGGG-MIPKVNCCIRSLAQ 326 (358)
Q Consensus 252 ~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~-~~vtGG-M~~Kv~aA~~al~~ 326 (358)
.+++|++|+++|.+|+|++|+++|||+|||+++| +|+ ++|++|+++|+.++... +...|+ |..++.++..+.+.
T Consensus 114 -~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~ 192 (221)
T cd04253 114 -GQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERS 192 (221)
T ss_pred -CCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHC
Confidence 3579999999999999999999999999999854 344 69999999999998654 223344 56688777777788
Q ss_pred CCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 327 GVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 327 Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
|++ ++|+||+.|+.| .++|+|+..||.|.
T Consensus 193 gi~-~~I~~g~~p~~l-~~~l~g~~~GT~I~ 221 (221)
T cd04253 193 GIK-TIVVDGRDPENL-ERALKGEFVGTIIE 221 (221)
T ss_pred CCe-EEEECCCCccHH-HHHHCCCCCCeEeC
Confidence 988 999999999987 67888889999984
No 56
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.96 E-value=9.2e-27 Score=216.67 Aligned_cols=222 Identities=18% Similarity=0.219 Sum_probs=164.0
Q ss_pred CeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHH-hHHHHHcCCCccccCCcccCCHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEI-NFWLKRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i-~~~l~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
+++||||||++++++. ..+.+.++++.|+.+...|+++|||||||++. +...++++..... ...+.+
T Consensus 2 ~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~a~~~~~~~~~--------~d~~g~ 73 (233)
T TIGR02075 2 KRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKELGIDRVT--------ADYMGM 73 (233)
T ss_pred CEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHHHHhcCCCCcc--------HHHHHH
Confidence 6899999999999721 13345788999988887889999999999864 3224666654211 112222
Q ss_pred HHHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCC
Q 018330 169 VSMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247 (358)
Q Consensus 169 v~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~ 247 (358)
. ..++|.. +.+.|.++|+++..+++.+.. + .+ .....+.++.+|++|.|||+++.
T Consensus 74 ~----~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~-----~----~~-------~~~~~~~i~~ll~~g~VpV~~g~---- 129 (233)
T TIGR02075 74 L----ATVINGLALRDALEKLGVKTRVLSAISMP-----Q----IC-------ESYIRRKAIKHLEKGKVVIFSGG---- 129 (233)
T ss_pred H----HHHHHHHHHHHHHHhCCCCcEEeccccCC-----C----Cc-------cccCHHHHHHHHHCCCEEEEECC----
Confidence 2 2356665 488999999999888754322 0 00 12347899999999999999863
Q ss_pred CCCccccChHHHHHHHHHHcCCCeEEEeec-cccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 248 FGQSYNINADTVAGELAAALGAEKLILLTD-VAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 248 ~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTD-V~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
.|. .++++|.+|+++|..|+|++|+|+|| |||||+++|. |+ ++|++++++|+.+. + -...++.++..+
T Consensus 130 ~g~-~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~---~----~~~~d~~~~~~a 201 (233)
T TIGR02075 130 TGN-PFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---N----LKVMDLTAFALA 201 (233)
T ss_pred CCC-CCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc---C----HHHHHHHHHHHH
Confidence 232 46799999999999999999999999 9999998653 44 69999999887653 1 012356666666
Q ss_pred HHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 324 LAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+.|++ ++|+||.+|+.| ..++.|+.+||+|.
T Consensus 202 ~~~~i~-v~i~~g~~~~~l-~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 202 RDNNLP-IVVFNIDEPGAL-KKVILGKGIGTLVS 233 (233)
T ss_pred HHCCCe-EEEEeCCCcchH-HHHHCCCCCCEEeC
Confidence 777988 999999999997 56778889999984
No 57
>PRK07431 aspartate kinase; Provisional
Probab=99.96 E-value=4.3e-27 Score=245.63 Aligned_cols=220 Identities=21% Similarity=0.318 Sum_probs=173.7
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMV 172 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~v 172 (358)
+++|+||||+++.+ ++...+++++|+.+...|+++|||||| |...+.++ +++. ++++..+.+...++
T Consensus 2 ~~iViKfGGss~~~---~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~-~~~~--------~~t~~~~~~~~~~~ 69 (587)
T PRK07431 2 ALIVQKFGGTSVGS---VERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELV-KLAK--------EISSNPPRREMDML 69 (587)
T ss_pred CeEEEEECchhcCC---HHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHH-HHHH--------HhccCCCHHHHHHH
Confidence 47899999999998 777789999999998899999999996 55555554 3321 23333334444555
Q ss_pred Hh-h-hhHHHHH-HHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-cc--C
Q 018330 173 LV-G-RVNKSLV-SLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AA--D 246 (358)
Q Consensus 173 l~-g-~ln~~lv-~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~--~ 246 (358)
+. | .++..+. ..|+++|++++++++.+..+++.... + .+++..++.+.++.+++.|.|||++|. +. +
T Consensus 70 ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~------~-~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~ 142 (587)
T PRK07431 70 LSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEH------G-RARILEIKTDRIQRHLDAGKVVVVAGFQGISLS 142 (587)
T ss_pred HHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCC------C-ceeeeeccHHHHHHHHhCCCeEEecCCcCCCCC
Confidence 43 3 4566555 58999999999999988888876532 2 367788889999999999999999984 44 3
Q ss_pred CCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--c-CcccccccHHHHHHHHhCCCCCCCcHHHHHHH
Q 018330 247 EFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--P-MSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCC 320 (358)
Q Consensus 247 ~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p-~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA 320 (358)
..|+++++ ++|++|+.+|.+|+|++++|+|||||||+++|. | .++|++|+++|+.+++..| +++|. .+++
T Consensus 143 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G--~~v~~--~~a~ 218 (587)
T PRK07431 143 SNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLG--ASVLH--PRAV 218 (587)
T ss_pred CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCC--CceEh--HHHH
Confidence 44777765 899999999999999999999999999987542 3 3699999999999997644 46776 5588
Q ss_pred HHHHHcCCCEEEEEeCC
Q 018330 321 IRSLAQGVRTASIIDGR 337 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~G~ 337 (358)
..+.+.|++ ++|.|+.
T Consensus 219 ~~~~~~~i~-i~i~~~~ 234 (587)
T PRK07431 219 EIARNYGVP-LVVRSSW 234 (587)
T ss_pred HHHHHcCCc-EEEecCC
Confidence 888899999 9999875
No 58
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.95 E-value=4.6e-26 Score=210.19 Aligned_cols=212 Identities=20% Similarity=0.277 Sum_probs=153.8
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHH---HcCCCccccCCcccCCHHHHHHHHHH
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLK---RFGIEPVFRDGLRVTDANTMEIVSMV 172 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~---~~gi~~~~~~g~rvt~~~~~~~v~~v 172 (358)
+||||||+++++++..+.+.++++.|+.+... +++|||||||.+++.+++ .++.. ....+.+...
T Consensus 1 iViKlGGs~l~~~~~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~-----------~~~~~~~g~~ 68 (221)
T TIGR02076 1 IVISLGGSVLSPEIDAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGAS-----------ETFLDEIGID 68 (221)
T ss_pred CEEEechhhcCCCCCHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCC-----------HHHHHHhhhH
Confidence 58999999999864224557888888888765 899999999998765532 12221 1122222222
Q ss_pred HhhhhHHHHHHHHH-HcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCc
Q 018330 173 LVGRVNKSLVSLIN-KAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQS 251 (358)
Q Consensus 173 l~g~ln~~lv~~L~-~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~ 251 (358)
..++|..+.+.|. ..++++++. +......+++.|.|||++|.. .
T Consensus 69 -~~~ln~~~l~~ll~~~~~~~~~~----------------------------~~~~~~~~l~~g~ipv~~G~~---~--- 113 (221)
T TIGR02076 69 -ATRLNAMLLIAALGDDAYPKVPE----------------------------NFEEALEAMSLGKIVVMGGTH---P--- 113 (221)
T ss_pred -HHHHHHHHHHHHHHhcCCCCcCC----------------------------CHHHHHHHHHcCCEEEEcCCC---C---
Confidence 3467877665444 455554211 223446678899999999953 1
Q ss_pred cccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCC-CC-CcHHHHHHHHHHHHc
Q 018330 252 YNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKV-GG-GMIPKVNCCIRSLAQ 326 (358)
Q Consensus 252 ~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~v-tG-GM~~Kv~aA~~al~~ 326 (358)
.+++|++|+++|.+|+|++|+|+|||||||+++| +|+ ++|++|+++|+.++..++.. +| +|..|+.++..+.+.
T Consensus 114 -~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~ 192 (221)
T TIGR02076 114 -GHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERS 192 (221)
T ss_pred -CCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHC
Confidence 3689999999999999999999999999998754 344 69999999999998765433 45 456677766666667
Q ss_pred CCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 327 GVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 327 Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
|++ ++|++|+.|+.|. +++.|+..||.|.
T Consensus 193 ~i~-v~I~~g~~~~~l~-~~l~g~~~GT~i~ 221 (221)
T TIGR02076 193 KIR-TIVVNGRDPENLE-KVLKGEHVGTIIE 221 (221)
T ss_pred CCc-EEEECCCCccHHH-HHHCCCCCCeEeC
Confidence 877 9999999999985 5788888999984
No 59
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.94 E-value=8.5e-26 Score=228.39 Aligned_cols=231 Identities=23% Similarity=0.279 Sum_probs=174.2
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCC------c----------
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDG------L---------- 158 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g------~---------- 158 (358)
++|+||||+++.+ ++.+..+++.|......|+++|+|||+...++..|.++.....+..+ +
T Consensus 2 ~~V~KFGGssv~~---~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 78 (441)
T TIGR00657 2 LIVQKFGGTSVGN---AERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIEILER 78 (441)
T ss_pred CEEEEeCcccCCC---HHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 5899999999999 77678889988887778999999999977776666544322211111 0
Q ss_pred -----------ccCCHHHH-----HHHHHHHh-h-hhHH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccc
Q 018330 159 -----------RVTDANTM-----EIVSMVLV-G-RVNK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGE 219 (358)
Q Consensus 159 -----------rvt~~~~~-----~~v~~vl~-g-~ln~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~ 219 (358)
+.++.... ....+++. | +++. .++..|+++|++++++++.+..+++..... ....
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~------~~~~ 152 (441)
T TIGR00657 79 LIPQAIAEELKRLLDAELVLEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFG------RARV 152 (441)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCC------ceee
Confidence 00000000 01233433 6 3455 477899999999999999999898876432 1223
Q ss_pred eeecCHHHHHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-ccc
Q 018330 220 VARVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLV 292 (358)
Q Consensus 220 v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI 292 (358)
+..++.+.+..+++.|.|||++| ++.+.+|++.++ ++|++|+.+|.+|+|++|+++|||||||+++|. |+ +++
T Consensus 153 ~~~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i 232 (441)
T TIGR00657 153 IIEILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRI 232 (441)
T ss_pred cHhhhHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeEC
Confidence 56778999999999999999999 578888998887 799999999999999999999999999997542 33 699
Q ss_pred ccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCc
Q 018330 293 KEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVE 339 (358)
Q Consensus 293 ~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~ 339 (358)
++|+++|+.+++.. |.+..+.+++..+.+.+++ ++|.|+..|
T Consensus 233 ~~is~~ea~el~~~----G~~v~~~~a~~~~~~~~i~-i~i~~~~~~ 274 (441)
T TIGR00657 233 DEISYEEMLELASF----GAKVLHPRTLEPAMRAKIP-IVVKSTFNP 274 (441)
T ss_pred CccCHHHHHHHHhc----CCcccCHHHHHHHHHcCCe-EEEecCCCC
Confidence 99999999999764 3345555666677778998 999998765
No 60
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.94 E-value=1.4e-24 Score=201.67 Aligned_cols=249 Identities=25% Similarity=0.372 Sum_probs=174.2
Q ss_pred CeEEEEECCcccCCCCh----h---HHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK----D---NLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----~---~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~ 166 (358)
+++||-|||++|-.++. + +.....++.|+.|...|+++||.||.||+++.++.+.....+.. +......+++
T Consensus 1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~-~~p~~PLd~~ 79 (312)
T COG0549 1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEK-GVPAYPLDVL 79 (312)
T ss_pred CeEEEEecchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhcccc-CCCCccHHHH
Confidence 57999999999987632 1 12356788899998999999999999999998876543321111 1111111222
Q ss_pred HHHHHHHhhhhH-HHHHHHHHHcC---------------------------------------------CeeEeecCCCc
Q 018330 167 EIVSMVLVGRVN-KSLVSLINKAG---------------------------------------------ATAVGLSGMDG 200 (358)
Q Consensus 167 ~~v~~vl~g~ln-~~lv~~L~~~G---------------------------------------------i~av~lsg~d~ 200 (358)
-..++-+.|.+- ..|...|..+| +......+..+
T Consensus 80 ~AmsQG~IGy~l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~ 159 (312)
T COG0549 80 VAMSQGMIGYMLQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGY 159 (312)
T ss_pred hHhhhhHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCe
Confidence 222222222221 22334444444 33333333333
Q ss_pred cEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-----CccCCC---CCccccChHHHHHHHHHHcCCCeE
Q 018330 201 RLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-----VAADEF---GQSYNINADTVAGELAAALGAEKL 272 (358)
Q Consensus 201 ~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-----v~~~~~---G~~~~i~sD~~Aa~lA~~L~AdkL 272 (358)
+.++++|.+ ++.+..+.|+.|+++|.++|.+| +..+.. |-...||.|..++.||..++||.|
T Consensus 160 RRVVpSP~P----------~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~l 229 (312)
T COG0549 160 RRVVPSPKP----------VRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLL 229 (312)
T ss_pred eEecCCCCC----------ccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEE
Confidence 333333332 23467999999999999999986 223333 445678999999999999999999
Q ss_pred EEeeccccccccccccC-cccccccHHHHHHHHhCCCC-CCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCC
Q 018330 273 ILLTDVAGILENREDPM-SLVKEIDIKGVKKMIEDGKV-GGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDA 350 (358)
Q Consensus 273 i~lTDV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~v-tGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~ 350 (358)
+++||||+||.+.+.|+ +.+++++.+|+++++..+.+ .|.|.|||++|+.+++++-+++.|.+ .+.+ .+++.|
T Consensus 230 iILTdVd~Vy~n~gkp~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~-~~~l~g- 304 (312)
T COG0549 230 IILTDVDAVYVNFGKPNQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENA-EAALEG- 304 (312)
T ss_pred EEEeccchheecCCCccchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHH-HHHhcc-
Confidence 99999999999988887 58999999999999987765 59999999999999999777788876 4443 566664
Q ss_pred CCceEEcC
Q 018330 351 GAGTMITG 358 (358)
Q Consensus 351 g~GT~I~~ 358 (358)
..||.|.+
T Consensus 305 ~~GT~I~~ 312 (312)
T COG0549 305 KAGTVIVP 312 (312)
T ss_pred CCCcEecC
Confidence 58999974
No 61
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.93 E-value=3.3e-24 Score=199.77 Aligned_cols=224 Identities=20% Similarity=0.261 Sum_probs=164.2
Q ss_pred CeEEEEECCcccCCCCh----hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIV 169 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v 169 (358)
+++|+|+||+++..++. ++.+..++++|+.+.+.|+++.||.|||........+.+ .| .++.+.+.+
T Consensus 16 ~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~------~~---~~r~~~D~~ 86 (249)
T PRK14556 16 KRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFG------NK---IRRATADSM 86 (249)
T ss_pred CEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhcc------CC---CchhhhhHH
Confidence 79999999999987531 345678999999999999999999999998754322211 01 122334455
Q ss_pred HHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCC
Q 018330 170 SMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEF 248 (358)
Q Consensus 170 ~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~ 248 (358)
.|. +..+|.. +..+|.+.|+++.-+|. -+.. .+ . ...+.+.+.+.|+.|.|+|+.+. .
T Consensus 87 Gml-aT~iNal~l~~~l~~~~~~~~v~sa--------~~~~---~~---~--e~~~~~~~~~~l~~g~vvi~~gg----~ 145 (249)
T PRK14556 87 GMI-ATMINALALRDMLISEGVDAEVFSA--------KGVD---GL---L--KVASAHEFNQELAKGRVLIFAGG----T 145 (249)
T ss_pred HHH-HHHHHHHHHHHHHHHcCCCeEEeec--------cccC---cC---C--CCCCHHHHHHHHhCCCEEEEECC----C
Confidence 554 6789985 66799999999765553 2211 01 1 12267778888999999998873 2
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLA 325 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~ 325 (358)
|. .++++|++|+++|..++||.|+++|||||||+++| +|+ ++|++|++.|..+.. -. -| +..++..+.+
T Consensus 146 G~-p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~--l~---vm--d~~A~~~a~~ 217 (249)
T PRK14556 146 GN-PFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKE--LN---VM--DLGAFTQCRD 217 (249)
T ss_pred CC-CcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhcccc--hH---hH--HHHHHHHHHH
Confidence 32 35579999999999999999999999999999865 354 599999987765421 01 12 2345666678
Q ss_pred cCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 326 QGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 326 ~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.|++ ++|+||++|++| .+++.|+..||+|.
T Consensus 218 ~gIp-i~I~ng~~~~~L-~~~l~Ge~~GT~i~ 247 (249)
T PRK14556 218 FGIP-IYVFDLTQPNAL-VDAVLDSKYGTWVT 247 (249)
T ss_pred CCCc-EEEECCCCchHH-HHHHcCCCCceEEE
Confidence 8999 999999999997 56778889999985
No 62
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.93 E-value=1.1e-23 Score=197.45 Aligned_cols=223 Identities=14% Similarity=0.224 Sum_probs=155.6
Q ss_pred CeEEEEECCcccCCCCh----hHHHHHHHHHHHHhHhCCCeEEEEECChHHH-hHHHHHcCCCccccCCcccCCHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEI-NFWLKRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i-~~~l~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
+++||||||+++.+++. ++....+++.|+.+...|++++||||||... +...+++++.. ...+.
T Consensus 5 ~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~~a~~~~~~~-----------~~~D~ 73 (247)
T PRK14557 5 KRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDR-----------VEADN 73 (247)
T ss_pred cEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHhcCCCh-----------HHHHH
Confidence 79999999999988642 2345788889988888899999999998744 35556655432 12233
Q ss_pred HHHHHhhhhHHHH-HHHHHHc-CCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccC
Q 018330 169 VSMVLVGRVNKSL-VSLINKA-GATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAAD 246 (358)
Q Consensus 169 v~~vl~g~ln~~l-v~~L~~~-Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~ 246 (358)
+.+. ..++|..+ ..+|+.. ++. ..+++..+.+ ..........+...|++|.|||+.|.
T Consensus 74 ig~~-g~~lna~ll~~~l~~~~~~~--------~~i~t~~~~~--------~~~~~~~~~~~~~~l~~g~VvV~~G~--- 133 (247)
T PRK14557 74 IGTL-GTIINSLMLRGVLTSKTNKE--------VRVMTSIPFN--------AVAEPYIRLRAVHHLDNGYIVIFGGG--- 133 (247)
T ss_pred HHHH-HHHHHHHHHHHHHHhhhCCc--------eeEEeccccc--------cccchhhHHHHHHHHhCCCEEEEECC---
Confidence 3332 45678754 4456653 443 3344443322 11123344556677999999999984
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEe-ecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILL-TDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIR 322 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~l-TDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~ 322 (358)
.|. ..+++|++|+++|..++||.|+++ |||||||+++| +|+ ++|++|++.|+.. .+. .-|. ..++..
T Consensus 134 -~g~-~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~---~~~--~~~~--~~A~~~ 204 (247)
T PRK14557 134 -NGQ-PFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVR---QNI--QVMD--QAALLL 204 (247)
T ss_pred -cCC-CccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhcc---cCH--HHHH--HHHHHH
Confidence 222 345799999999999999999999 59999999865 354 6999999887631 110 0122 235556
Q ss_pred HHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 323 SLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 323 al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+.+.|++ ++|+||++|++| ..++.|+..||+|.+
T Consensus 205 a~~~gi~-v~I~ng~~~~~l-~~~l~g~~~GT~i~~ 238 (247)
T PRK14557 205 ARDYNLP-AHVFNFDEPGVM-RRICLGEHVGTLIND 238 (247)
T ss_pred HHHCCCc-EEEEeCCCChHH-HHHHcCCCCcEEEec
Confidence 6777998 999999999987 567888999999964
No 63
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.92 E-value=4.1e-24 Score=205.47 Aligned_cols=240 Identities=19% Similarity=0.284 Sum_probs=166.6
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCC-----Ccccc-------------
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGI-----EPVFR------------- 155 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi-----~~~~~------------- 155 (358)
++|.||||+++.+ ++.+..+++-|... ..+.++|+|.++ |...+.+++.... .+.+.
T Consensus 1 ~~V~KFGGtSv~~---~~~~~~v~~iI~~~-~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~~~~~~~~l~~i~~~h~~~ 76 (298)
T cd04244 1 RLVMKFGGTSVGS---AERIRHVADLVGTY-AEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIAGVKDFIEILRLRHIKA 76 (298)
T ss_pred CEEEEECcccCCC---HHHHHHHHHHHHHh-hcCCCEEEEEeCCCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 4799999999999 65556666666654 457899999998 4333443321110 00000
Q ss_pred -CCcccCCHH-------------HH---------------HHHHHHH-hhhh-HH-HHHHHHHHcCCeeEeecCCCccEE
Q 018330 156 -DGLRVTDAN-------------TM---------------EIVSMVL-VGRV-NK-SLVSLINKAGATAVGLSGMDGRLF 203 (358)
Q Consensus 156 -~g~rvt~~~-------------~~---------------~~v~~vl-~g~l-n~-~lv~~L~~~Gi~av~lsg~d~~ll 203 (358)
+.+- .+.. .+ ....+++ .|+. +. .+...|+++|+++..+++.++.++
T Consensus 77 ~~~l~-~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~ 155 (298)
T cd04244 77 AKEAI-SDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGII 155 (298)
T ss_pred HHHhh-cchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHccee
Confidence 0000 0000 00 0001121 2444 33 356789999999999999999888
Q ss_pred EeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccc
Q 018330 204 TARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVA 279 (358)
Q Consensus 204 ~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~ 279 (358)
+.....+...+ ++....++. .+..+++.|.|||++| ++.+.+|+++++ ++|++|+.+|.+|+|++++++|||+
T Consensus 156 t~~~~~~a~~~--~~~~~~i~~-~l~~ll~~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~ 232 (298)
T cd04244 156 TDDNFGNARPL--PATYERVRK-RLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVD 232 (298)
T ss_pred ecCcccccccc--hhHHHHHHH-HHHHHhhcCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCC
Confidence 87654321111 233333433 4557888999999999 588889999988 9999999999999999999999999
Q ss_pred cccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 280 GILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 280 GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
|||+.+|+ |+ ++|++|+++|+.+++.. |.+..+.++..-+.+.+++ ++|.|+..| +..||+|
T Consensus 233 Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~----Ga~vlhp~ai~~a~~~~Ip-i~i~n~~~p----------~~~GT~I 297 (298)
T cd04244 233 GVMTADPRIVPEARTIPRLSYAEAMELAYF----GAKVLHPRTVEPAMEKGIP-VRVKNTFNP----------EAPGTLI 297 (298)
T ss_pred CCCCCCCCCCCCCeEcCccCHHHHHHHHhC----CCcccCHHHHHHHHHcCCc-EEEeeCCCC----------CCCCCEe
Confidence 99987542 33 69999999999999764 5677777788888889999 999998766 3579988
Q ss_pred c
Q 018330 357 T 357 (358)
Q Consensus 357 ~ 357 (358)
+
T Consensus 298 ~ 298 (298)
T cd04244 298 T 298 (298)
T ss_pred C
Confidence 4
No 64
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.91 E-value=1.1e-22 Score=185.44 Aligned_cols=224 Identities=19% Similarity=0.254 Sum_probs=166.5
Q ss_pred cCCeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHH-cCCCccccCCcccCCHHHH
Q 018330 92 RGKTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKR-FGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~-~gi~~~~~~g~rvt~~~~~ 166 (358)
+.+++|+|+||+++..++ .++.+.+++++|+.+...|.++.||.|||..++.+... .|++ | .+.
T Consensus 4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~-------r----~~~ 72 (238)
T COG0528 4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMD-------R----VTA 72 (238)
T ss_pred ceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCc-------h----hhh
Confidence 448999999999999864 24667899999999998999999999999987655432 2333 2 234
Q ss_pred HHHHHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCcc
Q 018330 167 EIVSMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAA 245 (358)
Q Consensus 167 ~~v~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~ 245 (358)
+.+.|. +.++|.. +.++|.++|+++.-+|. -..+. + ....+.+...+.|+.|.|+|+.+
T Consensus 73 D~mGml-aTvmNal~L~~aL~~~~~~~~v~sa--------i~~~~------~--~e~~~~~~A~~~l~~grVvIf~g--- 132 (238)
T COG0528 73 DYMGML-ATVMNALALQDALERLGVDTRVQSA--------IAMPQ------V--AEPYSRREAIRHLEKGRVVIFGG--- 132 (238)
T ss_pred hHHHHH-HHHHHHHHHHHHHHhcCCcceeccc--------ccCcc------c--cCccCHHHHHHHHHcCCEEEEeC---
Confidence 444443 5678984 67799999999754442 22220 0 02234556667789999999998
Q ss_pred CCCCCccccChHHHHHHHHHHcCCCeEEEeec-ccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHH
Q 018330 246 DEFGQSYNINADTVAGELAAALGAEKLILLTD-VAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCI 321 (358)
Q Consensus 246 ~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTD-V~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~ 321 (358)
.+|++++ ++|++|+++|..++||-|+..|+ |||||+++| ||+ +++++|+++|+.+..-. =|- ..|.
T Consensus 133 -Gtg~P~f-TTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~-----vmD---~tA~ 202 (238)
T COG0528 133 -GTGNPGF-TTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLK-----VMD---PTAF 202 (238)
T ss_pred -CCCCCCC-chHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcCe-----eec---HHHH
Confidence 3566655 69999999999999999999995 999999865 566 59999999998886310 011 2344
Q ss_pred -HHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 322 -RSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 322 -~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+.+++++ ++++|.+++++| ..++.|+..||.|.+
T Consensus 203 ~l~~~~~i~-i~Vfn~~~~~~l-~~~~~ge~~gT~V~~ 238 (238)
T COG0528 203 SLARDNGIP-IIVFNINKPGNL-KRALKGEEVGTIVEP 238 (238)
T ss_pred HHHHHcCCc-EEEEeCCCCccH-HHHHcCCCCceEecC
Confidence 44566888 999999999996 667789999999974
No 65
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.91 E-value=2.1e-23 Score=190.30 Aligned_cols=195 Identities=26% Similarity=0.411 Sum_probs=137.0
Q ss_pred EEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHH---HHcCCCccccCCcccCCHHHHHHHHHHH
Q 018330 97 VVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWL---KRFGIEPVFRDGLRVTDANTMEIVSMVL 173 (358)
Q Consensus 97 VIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l---~~~gi~~~~~~g~rvt~~~~~~~v~~vl 173 (358)
|||+|||.+.+ ...+.+.+..+. |++++||.|||++++.+. .++|++. .+.+.+.+.
T Consensus 1 vvKiGGsl~~~------~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~~~~g~~~-----------~~ad~mgil- 60 (203)
T cd04240 1 VVKIGGSLIRE------AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQERKGLSD-----------AAAHWMAIL- 60 (203)
T ss_pred CEEEccccccc------HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHHHHcCCCh-----------HHHHHHHHH-
Confidence 79999999765 244555555443 899999999999976654 3444432 222222222
Q ss_pred hhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCcc----CCCC
Q 018330 174 VGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAA----DEFG 249 (358)
Q Consensus 174 ~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~----~~~G 249 (358)
+.++|..+.+ ... + +. ..-+.+.+.+++..|.|||+.|... +..+
T Consensus 61 at~~na~~l~---~~~-~---------------~~------------~~~~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~ 109 (203)
T cd04240 61 AMEQYGYLLA---DLE-P---------------RL------------VARTLAELTDVLERGKIAILLPYRLLLDTDPLP 109 (203)
T ss_pred HHHHHHHHHh---ccC-C---------------cc------------ccCCHHHHHHHHHCCCcEEEeCchhhcccCCCC
Confidence 3345655422 100 0 00 0113567889999999999999654 5677
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCC
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVR 329 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~ 329 (358)
+.+|+|+|++|+++|..|+|++|+++|||||||+++ +++|++++.+|+.. .+.+. +|.+|+ +.+.|++
T Consensus 110 ~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d---a~~i~~i~~~e~~~---~~~id-~~~~~~-----~~~~gi~ 177 (203)
T cd04240 110 HSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD---GKLVNEIAAAELLG---ETSVD-PAFPRL-----LTKYGIR 177 (203)
T ss_pred cccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCC---CcCccccCHHHhCC---CCeeh-hhHHHH-----HHhCCCe
Confidence 889999999999999999999999999999999862 68999999887653 12222 244444 3567885
Q ss_pred EEEEEeCCCcchHHHHHHcCC-CCceEE
Q 018330 330 TASIIDGRVEHSLLLEILTDA-GAGTMI 356 (358)
Q Consensus 330 ~v~Ii~G~~~~~Ll~el~~~~-g~GT~I 356 (358)
++|+||+.|++|...+ .++ ++||.|
T Consensus 178 -v~I~~g~~~~~l~~~l-~g~~~~GT~I 203 (203)
T cd04240 178 -CYVVNGDDPERVLAAL-RGREGVGTRI 203 (203)
T ss_pred -EEEECCCCccHHHHHH-CCCCCCCCCC
Confidence 9999999999986655 556 799976
No 66
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.90 E-value=4.2e-22 Score=200.49 Aligned_cols=237 Identities=21% Similarity=0.252 Sum_probs=168.8
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCCc----------------cccCC
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIEP----------------VFRDG 157 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~~----------------~~~~g 157 (358)
++|.||||+++.+ .+.+..+++-+....+.|.++|+|.+++. ..+.+++-..... +....
T Consensus 3 ~iV~KFGGTSva~---~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~el~~~ 79 (447)
T COG0527 3 LIVQKFGGTSVAD---AERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASELILD 79 (447)
T ss_pred eEEEEeCCcccCC---HHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHHHHhhc
Confidence 7899999999999 66567788888887777999999999976 4444433222100 00000
Q ss_pred c-----------------------ccCCHHHHHHHHHHHhhhhHH--HHHHHHHHcCCeeEeecCCCccEEEeecCCCCC
Q 018330 158 L-----------------------RVTDANTMEIVSMVLVGRVNK--SLVSLINKAGATAVGLSGMDGRLFTARPSPNSD 212 (358)
Q Consensus 158 ~-----------------------rvt~~~~~~~v~~vl~g~ln~--~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~ 212 (358)
. ...++..++.+-. .||... .+...|++.|+++..+++++..+.+....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS--~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~--- 154 (447)
T COG0527 80 PFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLS--LGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHG--- 154 (447)
T ss_pred chhhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHh--hchHHHHHHHHHHHHhCCCceEEEchHHceeeecCccc---
Confidence 0 0112222333222 355443 466789999999999999888887765433
Q ss_pred CCCcccceeecCHHH-HHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc
Q 018330 213 KLGFVGEVARVDPTV-IEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED 287 (358)
Q Consensus 213 d~g~~g~v~~i~~~~-I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d 287 (358)
..++.....+. +..+++.|.|||++| .+.+++|++..+ .+|+.|+.||..|+||++.++|||||||+.+|.
T Consensus 155 ----~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPR 230 (447)
T COG0527 155 ----NARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPR 230 (447)
T ss_pred ----ccccchhhhhhhHHHHhcCCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCC
Confidence 22333445566 888999999999999 578889998876 899999999999999999999999999998542
Q ss_pred --cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 288 --PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 288 --p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
|+ ++|++|+|+|+.+|+..|. -.-.-++..-+.+.+++ ++|.|-..| +..||+|++
T Consensus 231 iVp~Ar~i~~isyeEa~ELA~~GA----kVLHprav~pa~~~~Ip-~~i~~t~~p----------~~~GTlI~~ 289 (447)
T COG0527 231 IVPDARLLPEISYEEALELAYLGA----KVLHPRAVEPAMRSGIP-LRIKNTFNP----------DAPGTLITA 289 (447)
T ss_pred CCCcceEcCccCHHHHHHHHHCCc----hhcCHHHHHHHHhcCCc-EEEEecCCC----------CCCceEEec
Confidence 33 6999999999999987542 01112344455666999 999885544 347888863
No 67
>PRK08373 aspartate kinase; Validated
Probab=99.89 E-value=6.9e-22 Score=192.63 Aligned_cols=236 Identities=17% Similarity=0.210 Sum_probs=159.9
Q ss_pred cCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcC-C-Ccc-----------ccCCc
Q 018330 92 RGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFG-I-EPV-----------FRDGL 158 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~g-i-~~~-----------~~~g~ 158 (358)
.++++|+||||+++.+ . +..+++-|... ..|.++|+|.++-..++..|.++. . ..+ +.+.+
T Consensus 2 ~~~m~V~KFGGsSv~~---~--~~~v~~ii~~~-~~~~~vvVVVSA~~gvTd~L~~l~~~~~~~~l~~i~~~h~~~~~~L 75 (341)
T PRK08373 2 VEKMIVVKFGGSSVRY---D--FEEALELVKYL-SEENEVVVVVSALKGVTDKLLKLAETFDKEALEEIEEIHEEFAKRL 75 (341)
T ss_pred CCCCEEEEECCcchHh---H--HHHHHHHHHHH-hcCCCEEEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 4678999999999987 3 34555555533 458899999999444443332211 0 000 00000
Q ss_pred -------------------ccCCHHHHHHHHHHHhhhh-HH-HHHHHHHHcCCeeEeecCCCccEEEeecCCC-CCCCCc
Q 018330 159 -------------------RVTDANTMEIVSMVLVGRV-NK-SLVSLINKAGATAVGLSGMDGRLFTARPSPN-SDKLGF 216 (358)
Q Consensus 159 -------------------rvt~~~~~~~v~~vl~g~l-n~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~-~~d~g~ 216 (358)
........+.+-. .|+. +. .+...|+++|+++..+++.+. +.+....++ ..|.
T Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~~~~~D~ils--~GE~lSa~lla~~L~~~Gi~a~~l~~~~~-i~t~~~~~~a~i~~-- 150 (341)
T PRK08373 76 GIDLEILSPYLKKLFNSRPDLPSEALRDYILS--FGERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGNAFIDI-- 150 (341)
T ss_pred ccchhhHHHHHHHHHHHhhccCChHHHHHHHH--HHHHHHHHHHHHHHHHCCCceEEEeHHHh-eeecCCccceeech--
Confidence 0111222232222 2333 33 466789999999999987544 333221111 0010
Q ss_pred ccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-c
Q 018330 217 VGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-S 290 (358)
Q Consensus 217 ~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~ 290 (358)
.....+.+.+..+++.|.|||++|+..+.+|.+.++ ++|++|+.+|.+|+|++++++|||||||+++|. |+ +
T Consensus 151 --~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~ 228 (341)
T PRK08373 151 --KKSKRNVKILYELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSAR 228 (341)
T ss_pred --hhhhhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCe
Confidence 112356689999999999999999655778887766 899999999999999999999999999998543 33 5
Q ss_pred ccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 291 LVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 291 lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+|++|+++|+.++. .+||..+...|+..++.+++ ++|.|-..| ..||+|.
T Consensus 229 ~i~~isy~Ea~ela-----~~Gakvlhp~ai~~a~~~Ip-i~v~~t~~~-----------~~GT~I~ 278 (341)
T PRK08373 229 LIPYLSYDEALIAA-----KLGMKALHWKAIEPVKGKIP-IIFGRTRDW-----------RMGTLVS 278 (341)
T ss_pred EcccCCHHHHHHHH-----HCcChhhhHHHHHHHHcCCc-EEEecCCCC-----------CCCcEEe
Confidence 99999999999985 57899999999988877888 888774322 3588884
No 68
>PRK06291 aspartate kinase; Provisional
Probab=99.89 E-value=7e-22 Score=201.07 Aligned_cols=229 Identities=18% Similarity=0.251 Sum_probs=163.1
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCC-----C-ccc-------------
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGI-----E-PVF------------- 154 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi-----~-~~~------------- 154 (358)
++|.||||+++.+ .+.+..+++-|......|.++|+|.++ |...+.+++.... . ..+
T Consensus 2 ~~V~KFGGtSv~~---~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 78 (465)
T PRK06291 2 RLVMKFGGTSVGD---GERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRDIAKVKDFIADLRERHYK 78 (465)
T ss_pred cEEEEeCcccCCC---HHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 5799999999999 655567777666555578899999998 4334443321100 0 000
Q ss_pred -cCCc----------------------------c---cCCHHHHHHHHHHHhhhhH-H-HHHHHHHHcCCeeEeecCCCc
Q 018330 155 -RDGL----------------------------R---VTDANTMEIVSMVLVGRVN-K-SLVSLINKAGATAVGLSGMDG 200 (358)
Q Consensus 155 -~~g~----------------------------r---vt~~~~~~~v~~vl~g~ln-~-~lv~~L~~~Gi~av~lsg~d~ 200 (358)
.+.+ + ...+...+.+ +..|+.. . .+...|+++|+++..+++.+.
T Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i--~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~ 156 (465)
T PRK06291 79 AIEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYI--LSFGERLSAPILSGALRDLGIKSVALTGGEA 156 (465)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHH--HhhhHHHHHHHHHHHHHhCCCCeEEEchHHC
Confidence 0000 0 0001111111 1135553 3 467789999999999999999
Q ss_pred cEEEeecCCCCCCCCcccce--e-ecCHHHHHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEE
Q 018330 201 RLFTARPSPNSDKLGFVGEV--A-RVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLI 273 (358)
Q Consensus 201 ~ll~a~~~~~~~d~g~~g~v--~-~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi 273 (358)
++++....+. .+.. . ....+.+..+++.|.|||++| ++.+.+|++.++ ++|++|+.+|..|+|++++
T Consensus 157 ~i~t~~~~~~------~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~ 230 (465)
T PRK06291 157 GIITDSNFGN------ARPLPKTYERVKERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIW 230 (465)
T ss_pred cEEecCCCCc------eeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEE
Confidence 8988765331 1110 0 111346788899999999999 578889999888 9999999999999999999
Q ss_pred Eeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCc
Q 018330 274 LLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVE 339 (358)
Q Consensus 274 ~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~ 339 (358)
++|||||||+.+|. |+ ++|++++++|+.++.. .|.+..+.+++..+.+.+++ ++|.|+..|
T Consensus 231 i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~----~G~~v~~~~a~~~~~~~~i~-i~i~~~~~~ 294 (465)
T PRK06291 231 IWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSY----FGAKVLHPRTIEPAMEKGIP-VRVKNTFNP 294 (465)
T ss_pred EEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHh----CCCcccCHHHHHHHHHcCCc-EEEecCCCC
Confidence 99999999987542 44 6999999999999964 35678888898888999999 999998776
No 69
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.88 E-value=3.1e-21 Score=185.17 Aligned_cols=239 Identities=17% Similarity=0.226 Sum_probs=159.9
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHH-hHHHHHcCC--Cccc------------------
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEI-NFWLKRFGI--EPVF------------------ 154 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i-~~~l~~~gi--~~~~------------------ 154 (358)
+|.||||+++.+ ++.+..+++-|..-.+.+.++|+|.++-..+ +.+++.... ...+
T Consensus 2 ~V~KFGGtSv~~---~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~l~~i~~~~~~~~~~L 78 (295)
T cd04259 2 VVLKFGGTSVSS---RARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNLAEQL 78 (295)
T ss_pred EEEEeCccccCC---HHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 699999999999 6555666666554334677899999984333 333221100 0000
Q ss_pred ------------------cCCccc---CCHHHHHHHHHHH-hhhhHH--HHHHHHHHcCCeeEeecCCCccEEEeecCCC
Q 018330 155 ------------------RDGLRV---TDANTMEIVSMVL-VGRVNK--SLVSLINKAGATAVGLSGMDGRLFTARPSPN 210 (358)
Q Consensus 155 ------------------~~g~rv---t~~~~~~~v~~vl-~g~ln~--~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~ 210 (358)
.+++.. ..+... .+++ .|+... .+...|++.|+++.-+++++. +++....+.
T Consensus 79 ~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~---d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~~~~~~~~ 154 (295)
T cd04259 79 EVDADALLANDLAQLQRWLTGISLLKQASPRTR---AEVLALGELMSTRLGAAYLEAQGLKVKWLDAREL-LTATPTLGG 154 (295)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhccCCHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHh-eeecccccc
Confidence 001000 011111 1221 355433 356789999999999987554 222222110
Q ss_pred -CCCCCcccce-eecCHHHHHHHHhC-CCeEEEcCC-ccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccc
Q 018330 211 -SDKLGFVGEV-ARVDPTVIEPLVNS-GHIPVIASV-AADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILE 283 (358)
Q Consensus 211 -~~d~g~~g~v-~~i~~~~I~~lL~~-G~IPVi~gv-~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~ 283 (358)
..+|+ ...+ .....+.|.+.+.. +.|||++|+ +.+.+|++.++ ++|++|+.+|..|+|++++++|||+|||+
T Consensus 155 ~~~~~~-~a~v~~~~~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt 233 (295)
T cd04259 155 ETMNYL-SARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFT 233 (295)
T ss_pred cccccc-cceehhhhhHHHHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 11111 1122 12345667766765 679999995 78889998876 99999999999999999999999999999
Q ss_pred cccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 284 NRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 284 ~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+|+ |+ ++|++|+++|+.+++. .|++..+.+++.-+.+.+++ ++|.|+..| +..||+|+
T Consensus 234 ~DP~~~~~a~~i~~ls~~ea~~l~~----~Ga~v~h~~a~~~a~~~~ip-i~i~~~~~p----------~~~GT~I~ 295 (295)
T cd04259 234 ANPHEVPHARLLKRLDYDEAQEIAT----MGAKVLHPRCIPPARRANIP-MVVRSTERP----------ELSGTLIT 295 (295)
T ss_pred CCCCCCCCCeEeceeCHHHHHHHHH----cCCcccCHHHHHHHHHCCCC-EEEEeCCCC----------CCCCcEeC
Confidence 6542 34 6999999999999976 35677788888888899999 999998765 35799884
No 70
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.85 E-value=7.5e-20 Score=175.50 Aligned_cols=155 Identities=22% Similarity=0.275 Sum_probs=114.1
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeec-CHHHHHHHHhC-CCeEEEcC-CccCCCCCcccc--
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARV-DPTVIEPLVNS-GHIPVIAS-VAADEFGQSYNI-- 254 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i-~~~~I~~lL~~-G~IPVi~g-v~~~~~G~~~~i-- 254 (358)
.+...|++.|+++..+++++. +++....+ . ..+... ..+.++.+++. +.|||++| ++.+..|++.++
T Consensus 130 lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~------~-~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ttLGR 201 (293)
T cd04243 130 LMSAYLQEQGLPAAWLDAREL-LLTDDGFL------N-AVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGETTTLGR 201 (293)
T ss_pred HHHHHHHhCCCCcEEEcHHHe-EEecCCCC------c-chhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCEEEeCC
Confidence 356789999999999987543 33322111 1 111111 14578888887 89999999 578889998877
Q ss_pred -ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCE
Q 018330 255 -NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRT 330 (358)
Q Consensus 255 -~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~ 330 (358)
++|++|+.+|..|+|++++++|||||||+++|. |+ ++|++|+++|+.++...|. .-+.|+ +..-+.+.+++
T Consensus 202 ggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Ga--kvl~p~--ai~~a~~~~i~- 276 (293)
T cd04243 202 GGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGA--KVLHPR--TIQPAIRKNIP- 276 (293)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCC--cccCHH--HHHHHHHCCCc-
Confidence 689999999999999999999999999998652 44 6999999999999976441 112222 33456677999
Q ss_pred EEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 331 ASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 331 v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
++|.|+..| +..||+|.
T Consensus 277 i~i~~~~~p----------~~~GT~I~ 293 (293)
T cd04243 277 IFIKNTFNP----------EAPGTLIS 293 (293)
T ss_pred EEEecCCCC----------CCCCCEeC
Confidence 999998766 35799884
No 71
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.84 E-value=1e-19 Score=174.66 Aligned_cols=152 Identities=21% Similarity=0.240 Sum_probs=114.1
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCccccee-ecCHHHHHHHHhC-CCeEEEcCC-ccCCCCCcccc--
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVA-RVDPTVIEPLVNS-GHIPVIASV-AADEFGQSYNI-- 254 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~-~i~~~~I~~lL~~-G~IPVi~gv-~~~~~G~~~~i-- 254 (358)
.+...|++.|+++..+++.+. +++... ++. ..+. ....+.++.++.. +.|||++|+ +.+.+|++..+
T Consensus 131 lla~~L~~~Gi~a~~ld~~~~-i~t~~~------~~~-a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGR 202 (294)
T cd04257 131 LLSALLNQQGLDAAWIDAREL-IVTDGG------YLN-AVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTLGR 202 (294)
T ss_pred HHHHHHHhCCCCeEEEchHHe-eEecCC------CCc-eEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCEEECCC
Confidence 355679999999999998663 333222 111 1221 1235677777776 899999994 77888998876
Q ss_pred -ChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHH---HHHHHHHcC
Q 018330 255 -NADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVN---CCIRSLAQG 327 (358)
Q Consensus 255 -~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~---aA~~al~~G 327 (358)
++|++|+.+|..|+|++++++|||||||+.+| .|+ ++|++|+++|+.++...| + |+. +..-+.+.+
T Consensus 203 GGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~G-----a--kv~h~~~~~~a~~~~ 275 (294)
T cd04257 203 NGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFG-----A--KVLHPKTIQPVAKKN 275 (294)
T ss_pred CchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCC-----C--cccCHHHHHHHHHCC
Confidence 79999999999999999999999999999864 254 599999999999997543 2 333 333566789
Q ss_pred CCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 328 VRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 328 v~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
++ ++|.|+..| +..||+|.
T Consensus 276 Ip-i~i~~~~~p----------~~~GT~I~ 294 (294)
T cd04257 276 IP-ILIKNTFNP----------EAPGTLIS 294 (294)
T ss_pred CC-EEEeeCCCC----------CCCCCEeC
Confidence 99 999998765 35789884
No 72
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.84 E-value=5.1e-19 Score=169.16 Aligned_cols=161 Identities=19% Similarity=0.218 Sum_probs=123.8
Q ss_pred hhh-HHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccCCCCCc
Q 018330 175 GRV-NKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AADEFGQS 251 (358)
Q Consensus 175 g~l-n~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~~~G~~ 251 (358)
|+. +.. +...|++.|+++..+++.+.++++..... ...+.....+.+.++++.+.|||++|+ +.+.+|++
T Consensus 119 GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~-------~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ 191 (288)
T cd04245 119 GEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPG-------NAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDI 191 (288)
T ss_pred hHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCcc-------ccccchhhHHHHHHHHhCCCEEEEeCccccCCCCCE
Confidence 444 443 55688999999999998887777655432 112233467888888999999999994 78889999
Q ss_pred ccc---ChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 018330 252 YNI---NADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLA 325 (358)
Q Consensus 252 ~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~ 325 (358)
.++ .+|+.|+.+|..|+|+.+.++|||||||+++| .|+ +.|++|+|+|+.+++..| ..=|.|+ +..-+.+
T Consensus 192 ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~G--akVlhp~--ai~~a~~ 267 (288)
T cd04245 192 KTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAG--FSVFHDE--ALIPAIE 267 (288)
T ss_pred EEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCC--CcccCHH--HHHHHHH
Confidence 998 99999999999999999999999999999854 244 599999999999997533 1123333 4445567
Q ss_pred cCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 326 QGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 326 ~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+++ ++|.|...| +..||+|.
T Consensus 268 ~~Ip-i~v~n~~~p----------~~~GT~I~ 288 (288)
T cd04245 268 AGIP-INIKNTNHP----------EAPGTLIV 288 (288)
T ss_pred CCCc-EEEeeCCCC----------CCCCceeC
Confidence 7999 999997665 35799884
No 73
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.83 E-value=1.6e-19 Score=175.22 Aligned_cols=221 Identities=19% Similarity=0.254 Sum_probs=143.4
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcC--CC--------ccc---cCCc---
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFG--IE--------PVF---RDGL--- 158 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~g--i~--------~~~---~~g~--- 158 (358)
++|+||||+++.+ . +..+++-|..+. .+.++|+|.|+-..++..|.++. .. ..+ ...+
T Consensus 1 m~V~KFGGsSv~~---~--~~~v~~ii~~~~-~~~~~vVVVSA~~gvTd~L~~~~~~~~~~~l~~i~~~h~~~~~~L~~~ 74 (327)
T TIGR02078 1 MIVVKFGGSSVRY---A--FEEALELVKSLS-EEKRVIVVVSALKGITDCLIRYANTFDKSAALEIEEIYEEFAKELGVD 74 (327)
T ss_pred CEEEEECCcchHH---H--HHHHHHHHHHHh-cCCCEEEEeCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3699999999998 4 355555555433 47799999999433333332211 00 000 0001
Q ss_pred ---------------ccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeec-CCC-CCCCCccccee
Q 018330 159 ---------------RVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP-SPN-SDKLGFVGEVA 221 (358)
Q Consensus 159 ---------------rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~-~~~-~~d~g~~g~v~ 221 (358)
+...+...+. + .-....+...|-..|+++..+++++. +.+.. .++ ..++ +..
T Consensus 75 ~~~~~~~l~~~~~~~~l~~~~~~d~---I--~s~GE~lSa~Lla~gi~a~~vd~~~~--i~t~~~~~~a~~~~----~~~ 143 (327)
T TIGR02078 75 LNILSPYLKELFNPPDLPKEALRDY---I--LSLGERLSAVIFAEGINGKVVDPWDI--FFAKGDFGNAFIDI----KKS 143 (327)
T ss_pred hhhhHHHHHHHHhhhccCChHHHHH---H--HHHHHHHHHHHHHccCCcEEEcHHHH--hccCCcCCceeech----hhh
Confidence 1111111111 1 11233455556667999988887543 33322 110 0111 112
Q ss_pred ecCHHHHHHHHhCCCeEEEcCCccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccc
Q 018330 222 RVDPTVIEPLVNSGHIPVIASVAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEI 295 (358)
Q Consensus 222 ~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I 295 (358)
..+.+.+..+++.|.|||++|+..+.+|...++ ++|++|+.+|..|+|++++++|||||||+++|. |+ ++|+++
T Consensus 144 ~~~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~l 223 (327)
T TIGR02078 144 KRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYL 223 (327)
T ss_pred HhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEcccc
Confidence 456788889999999999999644778877765 899999999999999999999999999998543 33 589999
Q ss_pred cHHHHHHHHhCCCCCCCcH-HHHHHHHHHHHcCCCEEEEEeCCC
Q 018330 296 DIKGVKKMIEDGKVGGGMI-PKVNCCIRSLAQGVRTASIIDGRV 338 (358)
Q Consensus 296 ~~~e~~~l~~~~~vtGGM~-~Kv~aA~~al~~Gv~~v~Ii~G~~ 338 (358)
+++|+.++.. .||. .+.+++..+.+.|++ ++|.|...
T Consensus 224 sy~Ea~ela~-----~Gakvlhp~a~~~a~~~~Ip-i~I~~t~~ 261 (327)
T TIGR02078 224 SYEEIKIAAK-----LGMKALQWKAADLAKEYKIP-VLFGRTRD 261 (327)
T ss_pred CHHHHHHHHH-----CCchhhHHHHHHHHHHCCCe-EEEEeCCC
Confidence 9999988754 3675 566677777778998 99988654
No 74
>PRK09084 aspartate kinase III; Validated
Probab=99.80 E-value=3e-18 Score=173.59 Aligned_cols=234 Identities=19% Similarity=0.234 Sum_probs=149.2
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECCh-HHHhHHHHHcCCC---ccc--------------cC
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGG-PEINFWLKRFGIE---PVF--------------RD 156 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l~~~gi~---~~~--------------~~ 156 (358)
++|.||||+++.+ .+.+..+++-|.. .+.++|+|.++- ...+.+++..... ..+ .+
T Consensus 1 m~V~KFGGtSv~~---~e~i~~v~~ii~~---~~~~~vvVVSA~~~~Td~L~~~~~~~~~~~~~~~~~~~i~~~h~~~~~ 74 (448)
T PRK09084 1 LVVAKFGGTSVAD---FDAMNRSADIVLS---NPNTRLVVLSASAGVTNLLVALAEGAEPGDERLALLDEIRQIQYAILD 74 (448)
T ss_pred CEEEEECccCcCC---HHHHHHHHHHHhc---CCCCEEEEEcCCCCchHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 4799999999999 6544555555442 578899999994 4344433221100 000 00
Q ss_pred Cccc-------------------------CCHHHHHHHHHHH-hhhhHH--HHHHHHHHcCCeeEeecCCCccEEEeecC
Q 018330 157 GLRV-------------------------TDANTMEIVSMVL-VGRVNK--SLVSLINKAGATAVGLSGMDGRLFTARPS 208 (358)
Q Consensus 157 g~rv-------------------------t~~~~~~~v~~vl-~g~ln~--~lv~~L~~~Gi~av~lsg~d~~ll~a~~~ 208 (358)
.+.. .++... .+++ .|+.-. .+...|++.|+++..+++.+. +++....
T Consensus 75 ~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~---d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~-i~t~~~~ 150 (448)
T PRK09084 75 RLGDPNVVREEIERLLENITVLAEAASLATSPALT---DELVSHGELMSTLLFVELLRERGVQAEWFDVRKV-MRTDDRF 150 (448)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHhhhhcCChhhh---hhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHe-EEecCCC
Confidence 0000 011111 1111 344432 467789999999999988554 4433221
Q ss_pred CCC-CCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccc
Q 018330 209 PNS-DKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILE 283 (358)
Q Consensus 209 ~~~-~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~ 283 (358)
+.. .++ ........+.+..+++.+ |||++| ++.+.+|++..+ ++|++|+.+|..|+|+.++++|||||||+
T Consensus 151 ~~~~~~~---~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t 226 (448)
T PRK09084 151 GRAEPDV---AALAELAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYT 226 (448)
T ss_pred CcccccH---HHHHHHHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 110 000 011112234566677888 999999 578899998877 99999999999999999999999999999
Q ss_pred cccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 284 NRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 284 ~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+|. |+ ++|++|+++|+.++...|. .=+.| .+...+.+.+++ ++|.|+..|+ ..||+|.
T Consensus 227 ~dP~~~~~a~~i~~is~~ea~ela~~Ga--~vlh~--~~~~~~~~~~i~-i~i~~~~~~~----------~~GT~I~ 288 (448)
T PRK09084 227 TDPRIVPAAKRIDEISFEEAAEMATFGA--KVLHP--ATLLPAVRSNIP-VFVGSSKDPE----------AGGTWIC 288 (448)
T ss_pred CCCCCCCCCeEcccCCHHHHHHHHhCCC--cccCH--HHHHHHHHcCCc-EEEEeCCCCC----------CCceEEe
Confidence 8642 44 5999999999999976542 00111 233445677999 9999987663 4577764
No 75
>PRK05925 aspartate kinase; Provisional
Probab=99.80 E-value=2.2e-18 Score=173.74 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=112.3
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccce--eecCHHHHHHHHhCCCeEEEcCC-ccCCCCCcccc--
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEV--ARVDPTVIEPLVNSGHIPVIASV-AADEFGQSYNI-- 254 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v--~~i~~~~I~~lL~~G~IPVi~gv-~~~~~G~~~~i-- 254 (358)
.+...|++.|+++..+++++. +++...... .++ ..+........++.+.|||++|+ +.+.+|++..+
T Consensus 116 l~a~~L~~~Gi~a~~ld~~~~-i~t~~~~~~-------a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLgr 187 (440)
T PRK05925 116 LICAYCCTYVLPLEFLEARQV-ILTDDQYLR-------AVPDLALMQTAWHELALQEDAIYIMQGFIGANSSGKTTVLGR 187 (440)
T ss_pred HHHHHHHhCCCCeEEEcHHHh-EeecCCccc-------cccCHHHHHHHHHHhhccCCcEEEecCcceeCCCCCEEEecc
Confidence 356688999999999987654 444332221 111 12223333335567789999995 88899998766
Q ss_pred -ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCC--CCCCcHHHHHHHHHHHHcCC
Q 018330 255 -NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGK--VGGGMIPKVNCCIRSLAQGV 328 (358)
Q Consensus 255 -~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~--vtGGM~~Kv~aA~~al~~Gv 328 (358)
++|++|+.+|..|+|+.++++|||||||+++|. |+ ++|++++++|+.++...|. ..++| ...+.+.|+
T Consensus 188 GgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~------~~~a~~~~I 261 (440)
T PRK05925 188 GGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPM------LKPCVRAGI 261 (440)
T ss_pred CcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHH------HHHHHHCCC
Confidence 999999999999999999999999999998552 44 5999999999999875432 34444 345667899
Q ss_pred CEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 329 RTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 329 ~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+ ++|.|++.|+ ..||+|.
T Consensus 262 p-i~I~~~~~p~----------~~GT~i~ 279 (440)
T PRK05925 262 P-IFVTSTFDVT----------KGGTWIY 279 (440)
T ss_pred c-EEEecCCCCC----------CCccEEe
Confidence 9 9999998774 3577774
No 76
>PRK09034 aspartate kinase; Reviewed
Probab=99.79 E-value=9.2e-18 Score=170.38 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=116.8
Q ss_pred hhh-HH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccCCCCCc
Q 018330 175 GRV-NK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAADEFGQS 251 (358)
Q Consensus 175 g~l-n~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~ 251 (358)
|+. +. .+...|++.|+++..+++.+.++++....+ ...+.....+.+..++..+.|||++| ++.+.+|++
T Consensus 119 GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~-------~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~ 191 (454)
T PRK09034 119 GEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPG-------NAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQI 191 (454)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcC-------ceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCCE
Confidence 544 33 356689999999999998887777654322 12233345677777777888999999 578889998
Q ss_pred ccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 018330 252 YNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLA 325 (358)
Q Consensus 252 ~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~ 325 (358)
.++ ++|+.|+.+|.+|+|+++.++|||||||+.+|. |+ +.+++|+++|+.+|+..|. .=|.|+ +..-+.+
T Consensus 192 ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Ga--kvlhp~--ai~~a~~ 267 (454)
T PRK09034 192 VTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGF--SVFHDE--ALIPAYR 267 (454)
T ss_pred EecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCc--ccCCHH--HHHHHHH
Confidence 877 899999999999999999999999999998542 44 5999999999999976431 123343 4445667
Q ss_pred cCCCEEEEEeCCCc
Q 018330 326 QGVRTASIIDGRVE 339 (358)
Q Consensus 326 ~Gv~~v~Ii~G~~~ 339 (358)
.+++ ++|.|...|
T Consensus 268 ~~Ip-i~v~~~~~p 280 (454)
T PRK09034 268 GGIP-INIKNTNNP 280 (454)
T ss_pred cCCC-EEEEcCCCC
Confidence 7999 999997655
No 77
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.79 E-value=8.9e-18 Score=160.91 Aligned_cols=154 Identities=23% Similarity=0.323 Sum_probs=110.2
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCccccee-----ecCHHHHHHHHhCCCeEEEcC-CccCCCCCccc
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVA-----RVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYN 253 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~-----~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~ 253 (358)
.+...|++.|+++..+++.+. +++... ++. .++. ....+.++. +..+.|||++| ++.+.+|++..
T Consensus 127 lla~~L~~~Gi~a~~ld~~~~-i~t~~~------~~~-a~~~~~~~~~~~~~~~~~-~~~~~v~Vv~Gf~g~~~~G~~tt 197 (292)
T cd04258 127 LFSEALREQGVPAEWFDVRTV-LRTDSR------FGR-AAPDLNALAELAAKLLKP-LLAGTVVVTQGFIGSTEKGRTTT 197 (292)
T ss_pred HHHHHHHhCCCCeEEEchHHe-EEecCC------Ccc-ccccHHHHHHHHHHHHHH-hhcCCEEEECCccccCCCCCEEe
Confidence 356688999999999988665 444322 111 1111 011222333 34678999999 47888899886
Q ss_pred c---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcC
Q 018330 254 I---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQG 327 (358)
Q Consensus 254 i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~G 327 (358)
+ ++|++|+.+|..|+|++++++|||+|||+.+|. |+ ++|++|+++|+.+++..|. .=+.| ++..-+.+.+
T Consensus 198 LGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Ga--kvlhp--~a~~~~~~~~ 273 (292)
T cd04258 198 LGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGA--KVLHP--ATLLPAIRKN 273 (292)
T ss_pred cCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCC--cccCH--HHHHHHHHcC
Confidence 5 899999999999999999999999999998642 44 6999999999999976432 11222 2445566779
Q ss_pred CCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 328 VRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 328 v~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
++ ++|.|...| +..||+|+
T Consensus 274 ip-i~i~~~~~p----------~~~GT~I~ 292 (292)
T cd04258 274 IP-VFVGSSKDP----------EAGGTLIT 292 (292)
T ss_pred Cc-EEEEeCCCC----------CCCCceeC
Confidence 99 999987655 45799885
No 78
>PLN02551 aspartokinase
Probab=99.78 E-value=7.6e-18 Score=172.91 Aligned_cols=236 Identities=19% Similarity=0.282 Sum_probs=153.0
Q ss_pred CCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHc------CCCc-cc----------
Q 018330 93 GKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRF------GIEP-VF---------- 154 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~------gi~~-~~---------- 154 (358)
+.++|.||||+++.+ .+.+..+++-|... .+.++|+|.++ |...+.+++.. +... .+
T Consensus 51 ~~~~V~KFGGtSv~~---~e~i~~v~~iI~~~--~~~~~vVVvSA~~~~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~ 125 (521)
T PLN02551 51 QLTVVMKFGGSSVAS---AERMREVADLILSF--PDERPVVVLSAMGKTTNNLLLAGEKAVSCGVTNVSEIEELSAIREL 125 (521)
T ss_pred CceEEEEECCCccCC---HHHHHHHHHHHHhc--CCCCEEEEEcCCCCchHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 357899999999999 65556666655532 24568888888 44444443210 1000 00
Q ss_pred c-------------------------CCccc---CCHHHHHHHHHHHhhhhH-H-HHHHHHHHcCCeeEeecCCCccEEE
Q 018330 155 R-------------------------DGLRV---TDANTMEIVSMVLVGRVN-K-SLVSLINKAGATAVGLSGMDGRLFT 204 (358)
Q Consensus 155 ~-------------------------~g~rv---t~~~~~~~v~~vl~g~ln-~-~lv~~L~~~Gi~av~lsg~d~~ll~ 204 (358)
+ .|+.. .++...+.+ +-.|+.. . .+...|++.|+++..+++++.++++
T Consensus 126 h~~~~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~i--ls~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t 203 (521)
T PLN02551 126 HLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYL--VSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFIT 203 (521)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHH--HhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEe
Confidence 0 01000 011111111 1124443 2 3556789999999999998887777
Q ss_pred eecCCCCCCCCcccceeecCHHHHHHHH-----hCCCeEEEcC-CccC-CCCCcccc---ChHHHHHHHHHHcCCCeEEE
Q 018330 205 ARPSPNSDKLGFVGEVARVDPTVIEPLV-----NSGHIPVIAS-VAAD-EFGQSYNI---NADTVAGELAAALGAEKLIL 274 (358)
Q Consensus 205 a~~~~~~~d~g~~g~v~~i~~~~I~~lL-----~~G~IPVi~g-v~~~-~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~ 274 (358)
..... ...+.....+.+...+ +.+.|||++| ++.+ .+|++.++ .+|+.|+.+|..|+|+++.+
T Consensus 204 ~~~~~-------~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I 276 (521)
T PLN02551 204 TDDFT-------NADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQV 276 (521)
T ss_pred cCCCC-------ccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEE
Confidence 55332 1222233444454444 3568999999 4788 89999877 89999999999999999999
Q ss_pred eeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCC
Q 018330 275 LTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAG 351 (358)
Q Consensus 275 lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g 351 (358)
+|||||||+.+|. |+ +.|++|+|+|+.+|+..|. .=+.|+ +..-+.+.+++ ++|-|-..| +.
T Consensus 277 ~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~Ga--kVlhp~--ai~pa~~~~Ip-i~vknt~~p----------~~ 341 (521)
T PLN02551 277 WKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGA--QVLHPQ--SMRPAREGDIP-VRVKNSYNP----------TA 341 (521)
T ss_pred EeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCC--cccCHH--HHHHHHHCCce-EEEEecCCC----------CC
Confidence 9999999998542 44 5999999999999976432 112233 44556778999 999885443 45
Q ss_pred CceEEc
Q 018330 352 AGTMIT 357 (358)
Q Consensus 352 ~GT~I~ 357 (358)
.||+|.
T Consensus 342 ~GT~I~ 347 (521)
T PLN02551 342 PGTLIT 347 (521)
T ss_pred CCcEEe
Confidence 677774
No 79
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.77 E-value=5.5e-18 Score=184.05 Aligned_cols=235 Identities=18% Similarity=0.204 Sum_probs=154.9
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECCh-HHHhHHHHHcCC--Cccc--------------cC
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGG-PEINFWLKRFGI--EPVF--------------RD 156 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l~~~gi--~~~~--------------~~ 156 (358)
+++|.||||+++.+ .+.+..+++-|..-.+.|.++|+|.++- ...+.+++.... ...+ .+
T Consensus 8 ~~~V~KFGGtSv~~---~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (861)
T PRK08961 8 RWVVLKFGGTSVSR---RHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGAGDSASRVAAIRQRHRELLA 84 (861)
T ss_pred CcEEEEECccccCC---HHHHHHHHHHHHhhcccCCCEEEEEeCCCCchHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 57899999999999 6555677776665445688999999984 334443222110 0000 00
Q ss_pred CcccCCH----HHHHHHH------------------HH-Hhhhh-HH-HHHHHHHHcCCeeEeecCCCccEEEeecC--C
Q 018330 157 GLRVTDA----NTMEIVS------------------MV-LVGRV-NK-SLVSLINKAGATAVGLSGMDGRLFTARPS--P 209 (358)
Q Consensus 157 g~rvt~~----~~~~~v~------------------~v-l~g~l-n~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~--~ 209 (358)
.+..... +.++.+. ++ ..|+. +. .+...|++.|+++..+++.+. +.+.+. .
T Consensus 85 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~--~~~~~~~~~ 162 (861)
T PRK08961 85 ELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREW--LTALPQPNQ 162 (861)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHh--EeecCcccc
Confidence 0000000 0000000 10 12333 23 356789999999999987555 333221 0
Q ss_pred -CCCCCCcccce-eecCHHHHHHHHhCC-CeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeecccccc
Q 018330 210 -NSDKLGFVGEV-ARVDPTVIEPLVNSG-HIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGIL 282 (358)
Q Consensus 210 -~~~d~g~~g~v-~~i~~~~I~~lL~~G-~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~ 282 (358)
....+. ...+ ...+.+.++.+++.+ .|||++| ++.+.+|++..+ ++|++|+.+|..|+|++++++|||+|||
T Consensus 163 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~ 241 (861)
T PRK08961 163 SEWSQYL-SVSCQWQSDPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMF 241 (861)
T ss_pred ccccccc-cceecHhhHHHHHHHHhccCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence 000010 0011 113455667777766 4999999 478889998776 9999999999999999999999999999
Q ss_pred ccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCc
Q 018330 283 ENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVE 339 (358)
Q Consensus 283 ~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~ 339 (358)
+++|. |+ ++|++|+++|+.+++. .|++..+.+++..+.+.|++ ++|.|+..|
T Consensus 242 t~dP~~~~~a~~i~~ls~~e~~el~~----~g~~v~~~~a~~~a~~~~i~-i~v~~~~~~ 296 (861)
T PRK08961 242 SANPKEVPDARLLTRLDYDEAQEIAT----TGAKVLHPRSIKPCRDAGIP-MAILDTERP 296 (861)
T ss_pred cCCCCCCCCceEecccCHHHHHHHHH----CCCeEECHHHHHHHHHCCCC-EEEEeCCCC
Confidence 97542 44 5999999999999976 36788888899899999999 999998765
No 80
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.76 E-value=3.9e-17 Score=157.33 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=108.3
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh-CCCeEEEcCC-ccCCCCCcccc---
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN-SGHIPVIASV-AADEFGQSYNI--- 254 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~-~G~IPVi~gv-~~~~~G~~~~i--- 254 (358)
.+...|++.|+++..+.+.+ ++.........+-.+. ..+.......+.+ .+.|||++|+ +.+.+|++.++
T Consensus 139 l~a~~L~~~Gi~a~~ld~~~--~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRg 213 (306)
T cd04247 139 FMAAVLRDRGVDAEYVDLSH--IVDLDFSIEALDQTFY---DELAQVLGEKITACENRVPVVTGFFGNVPGGLLSQIGRG 213 (306)
T ss_pred HHHHHHHhCCCCeEEEcHHH--heecCCCccccccchh---HHHHHHHHHHhhccCCceEEeeccEecCCCCCeEEeCCC
Confidence 35668899999998887643 3333320000000000 0111222222332 5789999994 77888998877
Q ss_pred ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEE
Q 018330 255 NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTA 331 (358)
Q Consensus 255 ~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v 331 (358)
++|++|+.+|..|+|++++++|||+|||+.+|+ |+ ++|++|+++|+.+++..|. .=+.| ++..-+.+.+++ +
T Consensus 214 GsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~Ga--kVlHp--~ti~pa~~~~Ip-i 288 (306)
T cd04247 214 YTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGS--EVIHP--FTMEQVIKARIP-I 288 (306)
T ss_pred chHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcC--cccCH--HHHHHHHHcCCc-E
Confidence 899999999999999999999999999998543 44 5999999999999976331 01122 244556678999 9
Q ss_pred EEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 332 SIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 332 ~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+|.|-..| +..||+|++
T Consensus 289 ~i~nt~~P----------~~~GT~I~~ 305 (306)
T cd04247 289 RIKNVENP----------RGEGTVIYP 305 (306)
T ss_pred EEecCCCC----------CCCCcEEcC
Confidence 99885544 467999974
No 81
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.74 E-value=1.1e-16 Score=172.75 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=117.0
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccce-eecCHHHHHHHH-hCCCeEEEcCC-ccCCCCCcccc--
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEV-ARVDPTVIEPLV-NSGHIPVIASV-AADEFGQSYNI-- 254 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v-~~i~~~~I~~lL-~~G~IPVi~gv-~~~~~G~~~~i-- 254 (358)
.+...|++.|+++..+++++. +++... |+ ..++ .....+.+++++ +.+.|||++|+ +.+.+|++.++
T Consensus 133 lla~~L~~~Gi~a~~ld~~~~-i~t~~~------~~-~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGR 204 (819)
T PRK09436 133 IMAAVLEARGHDVTVIDPREL-LLADGH------YL-ESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKGELVTLGR 204 (819)
T ss_pred HHHHHHHhCCCCeEEECHHHe-EEecCC------CC-CceechHhhHHHHHHHHhcCCcEEEecCcccCCCCCCEEEeCC
Confidence 356688999999999987543 333221 21 1122 122345566554 46889999994 77889998887
Q ss_pred -ChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCE
Q 018330 255 -NADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRT 330 (358)
Q Consensus 255 -~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~ 330 (358)
++|++|+.+|..|+|+.++++|||||||+.+| .|+ ++|++++++|+.++... |-+..+.+++.-+.+.+++
T Consensus 205 gGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~----G~kvlhp~a~~~a~~~~Ip- 279 (819)
T PRK09436 205 NGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYF----GAKVLHPRTIAPIAQFQIP- 279 (819)
T ss_pred CCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhc----CCccchHHHHHHHHHCCce-
Confidence 59999999999999999999999999999854 344 59999999999999753 4466788888888999999
Q ss_pred EEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 331 ASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 331 v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
++|.|+..|+ ..||+|.
T Consensus 280 i~i~n~~~p~----------~~GT~I~ 296 (819)
T PRK09436 280 CLIKNTFNPQ----------APGTLIG 296 (819)
T ss_pred EEEccCCCCC----------CCceEEE
Confidence 9999987653 4577764
No 82
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.71 E-value=3.6e-16 Score=167.92 Aligned_cols=154 Identities=15% Similarity=0.203 Sum_probs=113.6
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccce-eecCHHHHHHHHhCC--CeEEEcCC-ccCCCCCcccc-
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEV-ARVDPTVIEPLVNSG--HIPVIASV-AADEFGQSYNI- 254 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v-~~i~~~~I~~lL~~G--~IPVi~gv-~~~~~G~~~~i- 254 (358)
.+...|++.|+++..+++++ ++++.... ...+ .....+.++.++..+ .|||++|+ +.+.+|++.++
T Consensus 136 lla~~L~~~G~~a~~ld~~~--~i~~~~~~-------~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLG 206 (810)
T PRK09466 136 LMAALLNQQGLPAAWLDARS--FLRAERAA-------QPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGETVLLG 206 (810)
T ss_pred HHHHHHHhCCCCcEEEcHHH--heecCCCC-------CcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCEEEcC
Confidence 35668999999999998744 55544321 1222 222467788877654 89999994 78889998877
Q ss_pred --ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCC
Q 018330 255 --NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVR 329 (358)
Q Consensus 255 --~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~ 329 (358)
.+|+.|+.+|..|+|+++.++|||||||+.+|. |+ ++|++|+|+|+.+|+..|. .=+.|+ +..-+.+.+++
T Consensus 207 RGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~Ga--kVlHp~--ti~pa~~~~Ip 282 (810)
T PRK09466 207 RNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAA--PVLHAR--TLQPVSGSDID 282 (810)
T ss_pred CChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCc--cccCHH--HHHHHHHcCCe
Confidence 799999999999999999999999999998542 33 5999999999999987542 112233 44455677999
Q ss_pred EEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 330 TASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 330 ~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
++|.|-..| +..||+|.
T Consensus 283 -i~V~ntf~p----------~~~GT~I~ 299 (810)
T PRK09466 283 -LQLRCSYQP----------EQGSTRIE 299 (810)
T ss_pred -EEEecCCCC----------CCCceEEe
Confidence 999885443 34577773
No 83
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.57 E-value=1.3e-13 Score=120.82 Aligned_cols=117 Identities=23% Similarity=0.390 Sum_probs=90.9
Q ss_pred HhCCCeEEEcCC----ccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCC
Q 018330 232 VNSGHIPVIASV----AADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307 (358)
Q Consensus 232 L~~G~IPVi~gv----~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~ 307 (358)
...+.+||+-|. -.|+--..+-+.+|.++.++|+++++.++++.|||||||+.++++ +++++|+.+|+... .
T Consensus 90 i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~~-kLv~eI~A~dl~~~---~ 165 (212)
T COG2054 90 IKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPKG-KLVREIRASDLKTG---E 165 (212)
T ss_pred cCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCcc-hhhhhhhHhhcccC---c
Confidence 456677888772 256667788899999999999999999999999999999985443 89999998888762 1
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 308 ~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
..-.+..|++. .+.+.. ++++||+.|+++++.+-..+.+||+|.|
T Consensus 166 t~vD~~~P~Ll-----~k~~m~-~~Vvng~~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 166 TSVDPYLPKLL-----VKYKMN-CRVVNGKEPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred ccccchhhHHH-----HHcCCc-eEEECCCCHHHHHHHHhccccceEEEeC
Confidence 23345667753 456767 9999999999987755333458999976
No 84
>PRK09181 aspartate kinase; Validated
Probab=99.52 E-value=5.7e-13 Score=135.74 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=103.8
Q ss_pred HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh----CCCeEEEcCCccCCCCCcccc--
Q 018330 181 LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN----SGHIPVIASVAADEFGQSYNI-- 254 (358)
Q Consensus 181 lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~----~G~IPVi~gv~~~~~G~~~~i-- 254 (358)
+...|++.|+++..++..+++. . .++ . ..+.+...++ .+.|||++|+..+.+|++.++
T Consensus 154 la~~L~~~Gi~a~~ld~~~~~~------~--~~~-------~-~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTLGR 217 (475)
T PRK09181 154 TALLLQNRGVNARFVDLTGWDD------D--DPL-------T-LDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTFDR 217 (475)
T ss_pred HHHHHHhCCCCeEEeccccccC------C--ccc-------c-hHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEecCC
Confidence 4557889999988765322210 0 011 1 2456666555 478999999866678998877
Q ss_pred -ChHHHHHHHHHHcCCCeEEEeeccccccccccc----cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCC
Q 018330 255 -NADTVAGELAAALGAEKLILLTDVAGILENRED----PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGV 328 (358)
Q Consensus 255 -~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d----p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv 328 (358)
.+|+.|+.+|.+|+|+++.+||||+ ||+.+|. |+ +.|++|+|+|+.+|+..|. .=+.| ++..-+.+.++
T Consensus 218 GGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GA--kVLHp--~ti~pa~~~~I 292 (475)
T PRK09181 218 GYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGM--EAIHP--KAAKGLRQAGI 292 (475)
T ss_pred ChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCc--hhcCH--HHHHHHHHcCC
Confidence 8999999999999999999999997 9998542 33 5899999999999986542 11222 24455667899
Q ss_pred CEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 329 RTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 329 ~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+ ++|.|-..| +..||+|.
T Consensus 293 p-i~V~nt~~p----------~~~GT~I~ 310 (475)
T PRK09181 293 P-LRIKNTFEP----------EHPGTLIT 310 (475)
T ss_pred e-EEEecCCCC----------CCCCeEEe
Confidence 9 999885543 34677774
No 85
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=99.51 E-value=1.2e-12 Score=125.25 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=102.1
Q ss_pred HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh----CCCeEEEcCCccCCCCCcccc--
Q 018330 181 LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN----SGHIPVIASVAADEFGQSYNI-- 254 (358)
Q Consensus 181 lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~----~G~IPVi~gv~~~~~G~~~~i-- 254 (358)
+...|++.|+++.-++...++. .. ++ + ..+.+.+.+. .+.|||++|++.+.+|++..+
T Consensus 148 ~a~~L~~~Gi~A~~vD~~~~~~--~~------~~------t--~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itTLGR 211 (304)
T cd04248 148 TALLLQNRGVNARFVDLSGWRD--SG------DM------T--LDERISEAFRDIDPRDELPIVTGYAKCAEGLMREFDR 211 (304)
T ss_pred HHHHHHHCCCCeEEECcccccc--cC------CC------C--cHHHHHHHHHhhccCCcEEEeCCccCCCCCCEEEcCC
Confidence 4457788999887654322210 00 01 0 2234444343 578999999877778998876
Q ss_pred -ChHHHHHHHHHHcCCCeEEEeeccccccccccc----cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCC
Q 018330 255 -NADTVAGELAAALGAEKLILLTDVAGILENRED----PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGV 328 (358)
Q Consensus 255 -~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d----p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv 328 (358)
.+|+.|+.+|..|+|+++.++|||+ ||+.+|. |+ +.|++++|+|+.+|+..|. .-+.|+ +..-+.+.++
T Consensus 212 GGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~Ga--kvLHP~--ai~pa~~~~I 286 (304)
T cd04248 212 GYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGM--EAIHPK--AAKGLRQAGI 286 (304)
T ss_pred CcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcCh--hhcCHH--HHHHHHHcCC
Confidence 8999999999999999999999996 9998542 23 5899999999999976531 112233 5556667799
Q ss_pred CEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 329 RTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 329 ~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+ ++|.|-..| +..||+|+
T Consensus 287 P-i~Vkntf~P----------~~~GTlIt 304 (304)
T cd04248 287 P-LRVKNTFEP----------DHPGTLIT 304 (304)
T ss_pred e-EEEecCCCC----------CCCCceeC
Confidence 9 999885544 45799985
No 86
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=99.11 E-value=1.1e-09 Score=106.30 Aligned_cols=110 Identities=18% Similarity=0.234 Sum_probs=77.4
Q ss_pred CCCeEEEcC-Cc-cCCCCCccc---cChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHh
Q 018330 234 SGHIPVIAS-VA-ADEFGQSYN---INADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIE 305 (358)
Q Consensus 234 ~G~IPVi~g-v~-~~~~G~~~~---i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~ 305 (358)
.+.+||++| ++ .-+.|-... ..+|..|+.+|.+|++|.+-.|.|||||++.+|. |+ +++|-++.+|+.++.-
T Consensus 258 en~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaY 337 (559)
T KOG0456|consen 258 ENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAY 337 (559)
T ss_pred CCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHh
Confidence 457999999 45 234444333 3799999999999999999999999999998542 44 6999999999999864
Q ss_pred CCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 306 DGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 306 ~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
-|. -.-.-..+..+.+..++ ++|-|-..| .+.||.|+|
T Consensus 338 fGa----qVlHP~sM~~~~~~~IP-vRvKN~~NP----------~~~GTvI~~ 375 (559)
T KOG0456|consen 338 FGA----QVLHPFSMRPAREGRIP-VRVKNSYNP----------TAPGTVITP 375 (559)
T ss_pred hhh----hhccccccchhhccCcc-eEeecCCCC----------CCCceEecc
Confidence 331 11111122334455777 888774443 478888875
No 87
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=86.51 E-value=0.41 Score=47.34 Aligned_cols=144 Identities=10% Similarity=-0.120 Sum_probs=83.8
Q ss_pred HhhhHHHHhhcC----CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCC
Q 018330 82 SESLPFIQKFRG----KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDG 157 (358)
Q Consensus 82 ~~a~pyi~~~~~----k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g 157 (358)
|+.+.|...++. ..-+.|+|+.+..+ +. ......+-.+++.++-+++.|||++.-...+-..|.. ..+|
T Consensus 125 r~i~~~~vfs~~~~~~r~~~s~v~~~v~~~---~~--~e~t~s~f~~~~v~~t~ivl~~~~~p~i~e~~i~gn~--i~~G 197 (495)
T COG5630 125 RTGLYHSVFSQESRFFDIGNSNFIPIVKPY---VY--NEETASEFMTKDVVKFMDCLCQGNIPHIDKFFILNNA--IPSG 197 (495)
T ss_pred hhhhhhhhhhhhcccccccccceecccCCC---cc--hhhhHHHHHHHhhhheeeeecCCCCccceeeeecccc--cccc
Confidence 555666554432 45688999988877 31 2234445556678899999999987543322223332 4467
Q ss_pred cccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCe
Q 018330 158 LRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHI 237 (358)
Q Consensus 158 ~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~I 237 (358)
|.+...++. +.+. ...++..+...++..+-+.-+.+ ..+..... ..|++.++++..++ ....+++.-.+
T Consensus 198 -r~~~~h~~~-~~~~-~~~~~~~l~~~~~~~~kR~t~s~---~~l~~~~~---~~de~~~~e~~yh~--~nl~l~r~~l~ 266 (495)
T COG5630 198 -RNDNAHVFI-LSQE-LEHLSSSLSHNISTLTKREPRSQ---NLLHRMEV---KKDEISSLECEYHD--ENLLLMDKVLS 266 (495)
T ss_pred -cccccchhh-HHHH-HHHHHHHHhhccccccccCcccc---chhhhhhh---hhcccccccccccC--hHHHHHHHHhh
Confidence 777777665 4444 23444444444444444332222 22222222 34677788888887 44556787778
Q ss_pred EEEcCC
Q 018330 238 PVIASV 243 (358)
Q Consensus 238 PVi~gv 243 (358)
|+.+..
T Consensus 267 ~l~a~a 272 (495)
T COG5630 267 NLAATA 272 (495)
T ss_pred hcchhh
Confidence 887763
No 88
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=78.57 E-value=2.2 Score=37.47 Aligned_cols=55 Identities=29% Similarity=0.422 Sum_probs=27.8
Q ss_pred EeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchH
Q 018330 274 LLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSL 342 (358)
Q Consensus 274 ~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~L 342 (358)
+++||||++++ ++++-.-.-+|++.+ .+..|+--|. ..+.|++ +.|+.||+...+
T Consensus 11 li~DVDGvLTD----G~ly~~~~Gee~KaF----nv~DG~Gik~-----l~~~Gi~-vAIITGr~s~iv 65 (170)
T COG1778 11 LILDVDGVLTD----GKLYYDENGEEIKAF----NVRDGHGIKL-----LLKSGIK-VAIITGRDSPIV 65 (170)
T ss_pred EEEeccceeec----CeEEEcCCCceeeee----eccCcHHHHH-----HHHcCCe-EEEEeCCCCHHH
Confidence 34699999997 333222222233332 1223433221 2345766 667777765444
No 89
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=71.84 E-value=13 Score=28.06 Aligned_cols=45 Identities=24% Similarity=0.228 Sum_probs=27.2
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECCh-HHHhHHH
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGG-PEINFWL 145 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l 145 (358)
+.|+=-||.-.+| .++ +.+.|..+...--.++|||||. ..++.+.
T Consensus 4 ~rVli~GgR~~~D---~~~---i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA 49 (71)
T PF10686_consen 4 MRVLITGGRDWTD---HEL---IWAALDKVHARHPDMVLVHGGAPKGADRIA 49 (71)
T ss_pred CEEEEEECCcccc---HHH---HHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 4556678888888 443 3334444433335688999998 5555443
No 90
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=69.72 E-value=15 Score=35.73 Aligned_cols=61 Identities=21% Similarity=0.161 Sum_probs=47.5
Q ss_pred CeEEEEECCcccCCCChhHHH-HHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCCCccc
Q 018330 94 KTIVVKYGGAAMKPNQKDNLL-ASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGIEPVF 154 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~-~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi~~~~ 154 (358)
+.+|.-+.|..+++++.-+.+ ..+.+-|..|++.|+++.|+.+| ...+...++.+|+..-|
T Consensus 129 ~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 129 HVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred cEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 689999999999984321222 56777888899999999999977 56677888889987543
No 91
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=68.97 E-value=16 Score=35.53 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=47.1
Q ss_pred CeEEEEECCcccCCCChhHHH-HHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCCccc
Q 018330 94 KTIVVKYGGAAMKPNQKDNLL-ASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIEPVF 154 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~-~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~~~~ 154 (358)
+.+|.=+.|..+++...-+.+ ..+.+.|..|++.|++++|+.+++. .+...++++|+..-|
T Consensus 127 kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 127 HVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred eEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 689999999999994321222 5677888889999999999998754 456778888988544
No 92
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=61.09 E-value=1.5e+02 Score=27.89 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=35.9
Q ss_pred eecCHHHHHHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHH
Q 018330 221 ARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGV 300 (358)
Q Consensus 221 ~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~ 300 (358)
..+|...|..|-+.-.+|| |..-... +..+..+|.+|||.-+-.=-..|-=. +.|+. .-.++++|+
T Consensus 157 e~~NL~~i~~L~~~f~~~v--G~SDHt~--------g~~~~~~AvalGA~vIEKHfTldr~~---~g~Dh-~~Sl~p~el 222 (241)
T PF03102_consen 157 EDVNLRVIPTLKERFGVPV--GYSDHTD--------GIEAPIAAVALGARVIEKHFTLDRNL---KGPDH-KFSLEPDEL 222 (241)
T ss_dssp GG--TTHHHHHHHHSTSEE--EEEE-SS--------SSHHHHHHHHTT-SEEEEEB-S-TTS---CSTTG-CCCB-HHHH
T ss_pred HHcChHHHHHHHHhcCCCE--EeCCCCC--------CcHHHHHHHHcCCeEEEEEEECCCCC---CCCCh-hhcCCHHHH
Confidence 4456677777665544777 4321111 34578899999998554322211101 12333 344788888
Q ss_pred HHHHh
Q 018330 301 KKMIE 305 (358)
Q Consensus 301 ~~l~~ 305 (358)
.++.+
T Consensus 223 ~~lv~ 227 (241)
T PF03102_consen 223 KQLVR 227 (241)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 93
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=58.87 E-value=50 Score=30.34 Aligned_cols=65 Identities=14% Similarity=0.271 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEE--cCCccCCCCCccccC
Q 018330 178 NKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVI--ASVAADEFGQSYNIN 255 (358)
Q Consensus 178 n~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi--~gv~~~~~G~~~~i~ 255 (358)
...+.+.+.+.|++.. + ...+.+.|+..|+.|.+||+ +....+ |+
T Consensus 98 ~~~f~~~a~~~gv~~~--------------------~------~~~~~~~l~~~l~~G~~~lvLIS~y~~~--g~----- 144 (207)
T PF11814_consen 98 HEDFREEAEQAGVPVH--------------------Y------RPLSLADLRAALAAGAIVLVLISTYRMD--GK----- 144 (207)
T ss_pred HHHHHHHHHHCCCcee--------------------c------CCCCHHHHHHHHHCCCEEEEEEeecccC--CC-----
Confidence 3456777788888741 0 23467899999999998874 443333 22
Q ss_pred hHHHHHHHHHHcCCCeEEEeecccc--ccccccc
Q 018330 256 ADTVAGELAAALGAEKLILLTDVAG--ILENRED 287 (358)
Q Consensus 256 sD~~Aa~lA~~L~AdkLi~lTDV~G--V~~~~~d 287 (358)
++-+-|.+|.+|+ ||-++|+
T Consensus 145 ------------k~PHWV~v~g~d~~~vyihDP~ 166 (207)
T PF11814_consen 145 ------------KVPHWVVVTGVDDDFVYIHDPD 166 (207)
T ss_pred ------------CCCeEEEEEEecCCEEEEeCCC
Confidence 4567788887766 5555443
No 94
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=53.61 E-value=87 Score=30.73 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=49.7
Q ss_pred HHHHHhhhHHHHhh-cCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccC
Q 018330 78 VDILSESLPFIQKF-RGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD 156 (358)
Q Consensus 78 ~~~l~~a~pyi~~~-~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~ 156 (358)
.+.+++.+.-++.. .++.+=|-+=+- ..+ +. .. +.+..+.+.+-++|+.++|-|.--..+++.|+..-
T Consensus 39 ~e~l~~~i~~~~~l~tdkPfGVnl~~~-~~~---~~-~~---~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~--- 107 (320)
T cd04743 39 GEQVKALLEETAELLGDKPWGVGILGF-VDT---EL-RA---AQLAVVRAIKPTFALIAGGRPDQARALEAIGISTY--- 107 (320)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEecc-CCC---cc-hH---HHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEE---
Confidence 56677777667664 456655555221 112 11 12 23333445678899988886643345566665521
Q ss_pred CcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCC
Q 018330 157 GLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMD 199 (358)
Q Consensus 157 g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d 199 (358)
..+++.. ....+.+.|.+++-+.|.+
T Consensus 108 -~~v~s~~----------------~A~~a~~~GaD~vVaqG~E 133 (320)
T cd04743 108 -LHVPSPG----------------LLKQFLENGARKFIFEGRE 133 (320)
T ss_pred -EEeCCHH----------------HHHHHHHcCCCEEEEecCc
Confidence 0122221 1233456788887777654
No 95
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=50.54 E-value=53 Score=27.64 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=32.1
Q ss_pred CeEEEEECCcccCCCCh----hHHHHHHHHHHHHhHhCCCeEEEEECCh
Q 018330 94 KTIVVKYGGAAMKPNQK----DNLLASVVKDLVLLSVVGLRPVLVHGGG 138 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg 138 (358)
|.+++=+.|..+.+++. .......++.|..+++.|++++++.|=.
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~ 50 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRN 50 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 67899999999875321 1123466777888888899988887653
No 96
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=50.52 E-value=2e+02 Score=27.00 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=20.2
Q ss_pred ChhhhHHHHHhhhHHHHhhcCCeEEEEECCcccC
Q 018330 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMK 106 (358)
Q Consensus 73 ~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~ 106 (358)
+....-+.|.-+-+||. .+|+|+....
T Consensus 10 ~~~~~~d~Le~~g~yID-------~lKfg~Gt~~ 36 (237)
T TIGR03849 10 PPKFVEDYLKVCGDYIT-------FVKFGWGTSA 36 (237)
T ss_pred CHHHHHHHHHHhhhhee-------eEEecCceEe
Confidence 55677788888999987 7899665433
No 97
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=49.26 E-value=67 Score=30.29 Aligned_cols=205 Identities=19% Similarity=0.271 Sum_probs=95.8
Q ss_pred ChhhhHHHHHhhhHHHHhhcCCeEEEEECCcc--cCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCC
Q 018330 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAA--MKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGI 150 (358)
Q Consensus 73 ~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~--l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi 150 (358)
+....-+.|.-+-+||. .+|||+.. +.+ +.. +-+.|...++.| +-+..|| ........
T Consensus 23 g~~~~~dlLe~ag~yID-------~~K~g~Gt~~l~~---~~~---l~eki~l~~~~g--V~v~~GG-tl~E~a~~---- 82 (244)
T PF02679_consen 23 GLRYLEDLLESAGDYID-------FLKFGWGTSALYP---EEI---LKEKIDLAHSHG--VYVYPGG-TLFEVAYQ---- 82 (244)
T ss_dssp -HHHHHHHHHHHGGG-S-------EEEE-TTGGGGST---CHH---HHHHHHHHHCTT---EEEE-H-HHHHHHHH----
T ss_pred CHHHHHHHHHHhhhhcc-------EEEecCceeeecC---HHH---HHHHHHHHHHcC--CeEeCCc-HHHHHHHh----
Confidence 55777888899999988 78988543 334 222 233444455544 3345544 33222211
Q ss_pred CccccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHH
Q 018330 151 EPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEP 230 (358)
Q Consensus 151 ~~~~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~ 230 (358)
.+.+ ..+.+.+.+.|..++.+|- +-+ ++. ..--.+.|+.
T Consensus 83 -----------------------q~~~-~~yl~~~k~lGf~~IEiSd--Gti----------~l~-----~~~r~~~I~~ 121 (244)
T PF02679_consen 83 -----------------------QGKF-DEYLEECKELGFDAIEISD--GTI----------DLP-----EEERLRLIRK 121 (244)
T ss_dssp -----------------------TT-H-HHHHHHHHHCT-SEEEE----SSS------------------HHHHHHHHHH
T ss_pred -----------------------cChH-HHHHHHHHHcCCCEEEecC--Cce----------eCC-----HHHHHHHHHH
Confidence 1111 3466778899999998872 111 110 1112466777
Q ss_pred HHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHc--CCCeEEEeec---cccccccccccCcccccccHHHHHHHHh
Q 018330 231 LVNSGHIPVIASVAADEFGQSYNINADTVAGELAAAL--GAEKLILLTD---VAGILENREDPMSLVKEIDIKGVKKMIE 305 (358)
Q Consensus 231 lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L--~AdkLi~lTD---V~GV~~~~~dp~~lI~~I~~~e~~~l~~ 305 (358)
+-+.|+. |+++++.-..+.....+.+.....+..-| ||+++|+=.. ..|||++. .++..+.+.+++.
T Consensus 122 ~~~~Gf~-v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~-------g~~r~d~v~~i~~ 193 (244)
T PF02679_consen 122 AKEEGFK-VLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYDND-------GEVRTDLVEKIIE 193 (244)
T ss_dssp HCCTTSE-EEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-TT-------S-B-HHHHHHHHT
T ss_pred HHHCCCE-EeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccCCC-------CCccHHHHHHHHH
Confidence 7777766 66776643333333445556666665555 6676665433 22899863 2333445555543
Q ss_pred CCC----CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHc
Q 018330 306 DGK----VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILT 348 (358)
Q Consensus 306 ~~~----vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~ 348 (358)
.-. +----.++.+ ..-..+-|.. |.+-|-.-.+.+..|-|.
T Consensus 194 ~~~~~~lifEAp~k~qq-~~~I~~~G~~-VNLgNI~~~eVl~LE~LR 238 (244)
T PF02679_consen 194 RLGLEKLIFEAPQKEQQ-EWFIKRFGPN-VNLGNIAPSEVLALETLR 238 (244)
T ss_dssp TS-GGGEEEE--SHHHH-HHHHHHH-TT---EEEEEGGGHHHHHHHH
T ss_pred hCCHhHEEEeCCCHhHH-HHHHHHhCCC-cCcccCCHHHHHHHHHHh
Confidence 210 0001112333 3333455866 888664444555555554
No 98
>PTZ00063 histone deacetylase; Provisional
Probab=45.53 E-value=66 Score=32.96 Aligned_cols=69 Identities=16% Similarity=0.344 Sum_probs=49.3
Q ss_pred ChhhhHHHHHhhh-HHHHhhcCCeEEEEECCcccCCCChhH--H-HHHHHHHHHHhHhCCCeEEEEECChHHH
Q 018330 73 PAEFRVDILSESL-PFIQKFRGKTIVVKYGGAAMKPNQKDN--L-LASVVKDLVLLSVVGLRPVLVHGGGPEI 141 (358)
Q Consensus 73 ~~~~~~~~l~~a~-pyi~~~~~k~iVIKlGGs~l~~k~~~~--l-~~~~~~~Ia~L~~~G~~vVLVhGgg~~i 141 (358)
....+..+|++.+ |.++.|+-..||+-.|.-++..+.... + .+...+-+..+++.+.++++|-|||-..
T Consensus 230 ~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~~ 302 (436)
T PTZ00063 230 DDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYTI 302 (436)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCCc
Confidence 5678899999876 679999999999999999998753211 1 1223333444566788888888887543
No 99
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=43.96 E-value=65 Score=31.19 Aligned_cols=68 Identities=24% Similarity=0.238 Sum_probs=45.5
Q ss_pred ChhhhHHHHHhhh-HHHHhhcCCeEEEEECCcccCCCCh------hHHHHHHHHHHHHhHh-CCCeEEEEECChHH
Q 018330 73 PAEFRVDILSESL-PFIQKFRGKTIVVKYGGAAMKPNQK------DNLLASVVKDLVLLSV-VGLRPVLVHGGGPE 140 (358)
Q Consensus 73 ~~~~~~~~l~~a~-pyi~~~~~k~iVIKlGGs~l~~k~~------~~l~~~~~~~Ia~L~~-~G~~vVLVhGgg~~ 140 (358)
+..++...|++.+ |.+++|+-..+||-.|--....+.. ++....+.+.|..+.. ...++|+|.+||-.
T Consensus 220 ~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~ 295 (311)
T PF00850_consen 220 GDDEYLEAFEEILLPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYN 295 (311)
T ss_dssp BHHHHHHHHHHHHHHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SS
T ss_pred chHHHHHHHhhccccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCC
Confidence 6688999999998 8899999999999999998887531 2222345555554422 22399999999854
No 100
>PLN02645 phosphoglycolate phosphatase
Probab=42.89 E-value=68 Score=30.95 Aligned_cols=60 Identities=22% Similarity=0.387 Sum_probs=43.6
Q ss_pred HHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHH----HhHHHHHcCCC
Q 018330 87 FIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPE----INFWLKRFGIE 151 (358)
Q Consensus 87 yi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~----i~~~l~~~gi~ 151 (358)
++.+| +.+++=+-|..+.+ ........+.|..|++.|++++++.+.+.. .-+.++++|++
T Consensus 24 ~~~~~--~~~~~D~DGtl~~~---~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~ 87 (311)
T PLN02645 24 LIDSV--ETFIFDCDGVIWKG---DKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN 87 (311)
T ss_pred HHHhC--CEEEEeCcCCeEeC---CccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 44455 78999999999887 334456677888898999999999998632 22334667765
No 101
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=38.57 E-value=1.9e+02 Score=22.63 Aligned_cols=72 Identities=24% Similarity=0.403 Sum_probs=48.0
Q ss_pred hHHHHHhhh-HHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCc
Q 018330 77 RVDILSESL-PFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEP 152 (358)
Q Consensus 77 ~~~~l~~a~-pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~ 152 (358)
.++.|++.+ ..+.+-..+.+|+-+.+-..-| ..-...+.+-+..++..|.+++++ |-.+.+.+.++..|+..
T Consensus 24 ~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iD---ssg~~~l~~~~~~~~~~g~~l~l~-g~~~~v~~~l~~~gl~~ 96 (109)
T cd07041 24 RAEQLQERLLEAISRRRARGVIIDLTGVPVID---SAVARHLLRLARALRLLGARTILT-GIRPEVAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEECCCCchhc---HHHHHHHHHHHHHHHHcCCeEEEE-eCCHHHHHHHHHhCCCh
Confidence 355566643 5554445578999998888777 444455566566677788776655 55677788888888764
No 102
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=36.75 E-value=91 Score=27.45 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred EEeeccccccccc----cccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHc
Q 018330 273 ILLTDVAGILENR----EDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILT 348 (358)
Q Consensus 273 i~lTDV~GV~~~~----~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~ 348 (358)
.+++|+|||+++. ...+...+..+..+...+ ..+-+.|++ +.|+++.....+ ..++.
T Consensus 9 ~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~-----------------~~L~~~Gi~-laIiT~k~~~~~-~~~l~ 69 (169)
T TIGR02726 9 LVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGV-----------------IVLQLCGID-VAIITSKKSGAV-RHRAE 69 (169)
T ss_pred EEEEeCceeeECCeEEEcCCCcEEEEEecchHHHH-----------------HHHHHCCCE-EEEEECCCcHHH-HHHHH
Q ss_pred CCCCceEE
Q 018330 349 DAGAGTMI 356 (358)
Q Consensus 349 ~~g~GT~I 356 (358)
.-+..-.+
T Consensus 70 ~lgi~~~f 77 (169)
T TIGR02726 70 ELKIKRFH 77 (169)
T ss_pred HCCCcEEE
No 103
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=35.88 E-value=1.5e+02 Score=29.67 Aligned_cols=92 Identities=21% Similarity=0.384 Sum_probs=51.3
Q ss_pred eEEEEECC-h--HHHhHH---HHHcCCCc--cccCCccc-CCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCc
Q 018330 130 RPVLVHGG-G--PEINFW---LKRFGIEP--VFRDGLRV-TDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDG 200 (358)
Q Consensus 130 ~vVLVhGg-g--~~i~~~---l~~~gi~~--~~~~g~rv-t~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~ 200 (358)
-+++|.+. | ||..+. .++.|++. -|.|-... .|++++++++|- +.++|+.+|.+ |.+.
T Consensus 144 aILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE--------~RElLse~gf~-----Gd~~ 210 (449)
T KOG0460|consen 144 AILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEME--------IRELLSEFGFD-----GDNT 210 (449)
T ss_pred eEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHH--------HHHHHHHcCCC-----CCCC
Confidence 34444433 3 466432 35667764 34454444 488888888774 45677877754 4455
Q ss_pred cEEEeecCCCCCCCCcccceeecCHHHHHHHHhC--CCeEE
Q 018330 201 RLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNS--GHIPV 239 (358)
Q Consensus 201 ~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~--G~IPV 239 (358)
.++..+.+.. ..|+-..+-.+.|.+||+. .+||+
T Consensus 211 PvI~GSAL~A-----Leg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 211 PVIRGSALCA-----LEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred Ceeecchhhh-----hcCCCccccHHHHHHHHHHHhccCCC
Confidence 5555444321 1233345556778888873 45664
No 104
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=35.77 E-value=21 Score=24.82 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=16.8
Q ss_pred ccccccccccccCCCCCCc
Q 018330 15 LQSQLSFSSKSKAGSQSPS 33 (358)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (358)
.|+|++|-|-+.+|++.|.
T Consensus 31 s~~kssf~sd~skg~l~p~ 49 (50)
T PRK14094 31 DGEKSSFYSDSSKGKLGPK 49 (50)
T ss_pred ccCccceeccccCCCCCCC
Confidence 4789999999999999984
No 105
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=35.74 E-value=3.8e+02 Score=25.19 Aligned_cols=102 Identities=12% Similarity=0.047 Sum_probs=52.1
Q ss_pred eEEEEECCcccCCCCh--hHHHHHHHHHHHHhHhCCCeEEEEECChH--------HHhHHHHHcCCCcccc--CCcccCC
Q 018330 95 TIVVKYGGAAMKPNQK--DNLLASVVKDLVLLSVVGLRPVLVHGGGP--------EINFWLKRFGIEPVFR--DGLRVTD 162 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~--~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~--------~i~~~l~~~gi~~~~~--~g~rvt~ 162 (358)
-++|=+|++...+.+. +.+..++-..+...++-..+.+||+||.. ...+++.+.|++++.. +.-...+
T Consensus 46 d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk~gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT 125 (239)
T PRK10834 46 QVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRT 125 (239)
T ss_pred CEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCH
Confidence 3455599886533222 23335555555544444456788888732 1234567789886532 2222333
Q ss_pred HHHHHHHHHHHhhh-h--------HHHHHHHHHHcCCeeEeec
Q 018330 163 ANTMEIVSMVLVGR-V--------NKSLVSLINKAGATAVGLS 196 (358)
Q Consensus 163 ~~~~~~v~~vl~g~-l--------n~~lv~~L~~~Gi~av~ls 196 (358)
.+.+.....++..+ + +..-+..+++.|++++++.
T Consensus 126 ~en~~~a~~i~~~~~~iIVTq~fHm~RA~~ia~~~Gi~~~~~~ 168 (239)
T PRK10834 126 LDSIVRTRKVFDTNDFIIITQRFHCERALFIALHMGIQAQCYA 168 (239)
T ss_pred HHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHcCCceEEEe
Confidence 34343333332110 0 1122335678999988875
No 106
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=34.86 E-value=2.6e+02 Score=27.54 Aligned_cols=42 Identities=29% Similarity=0.334 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhHhCCCeEEEEECChHHH----hHHHHHcCCCccccCC
Q 018330 113 LLASVVKDLVLLSVVGLRPVLVHGGGPEI----NFWLKRFGIEPVFRDG 157 (358)
Q Consensus 113 l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i----~~~l~~~gi~~~~~~g 157 (358)
+.+++.++|..+ +-..||+.||-.++ ...++.+|++-....|
T Consensus 63 ynes~~~eI~~l---npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG 108 (337)
T COG2247 63 YNESVLDEIIEL---NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGG 108 (337)
T ss_pred ccHHHHHHHHhh---CCceEEEECCCCcCChhHHHHHHhCCcEEEEecC
Confidence 345667777765 56788888885544 3456778887554444
No 107
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=34.57 E-value=1.1e+02 Score=27.44 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=41.5
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHH-HhHHHHHcCCCc
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPE-INFWLKRFGIEP 152 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~-i~~~l~~~gi~~ 152 (358)
|.++.=+.|..+.++. .+.....+.|..|++.|++++++.|=... +...++.++++.
T Consensus 4 kli~~DlDGTLl~~~~--~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 4 KAIAIDIDGTITDKDR--RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSG 61 (230)
T ss_pred eEEEEecCCCcCCCCC--ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence 6788899999997632 22245667788888899999999888553 345667777763
No 108
>PTZ00346 histone deacetylase; Provisional
Probab=34.43 E-value=1.2e+02 Score=30.93 Aligned_cols=67 Identities=13% Similarity=0.294 Sum_probs=47.4
Q ss_pred ChhhhHHHHHhhh-HHHHhhcCCeEEEEECCcccCCCChhH--HH-HHHHHHHHHhHhCCCeEEEEECChH
Q 018330 73 PAEFRVDILSESL-PFIQKFRGKTIVVKYGGAAMKPNQKDN--LL-ASVVKDLVLLSVVGLRPVLVHGGGP 139 (358)
Q Consensus 73 ~~~~~~~~l~~a~-pyi~~~~~k~iVIKlGGs~l~~k~~~~--l~-~~~~~~Ia~L~~~G~~vVLVhGgg~ 139 (358)
....+..+|.+.+ |.+++|+-..||+-.|--+...+.... +- +.+..-+..+++.+.++++|-|||-
T Consensus 248 ~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGGY 318 (429)
T PTZ00346 248 TDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGGY 318 (429)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCcC
Confidence 5678889998875 679999999999999999888753211 11 2233333345566889999888884
No 109
>PLN02151 trehalose-phosphatase
Probab=34.17 E-value=2e+02 Score=28.70 Aligned_cols=67 Identities=21% Similarity=0.390 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCCeEEEeeccccccccc-cccCc-ccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeC
Q 018330 259 VAGELAAALGAEKLILLTDVAGILENR-EDPMS-LVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDG 336 (358)
Q Consensus 259 ~Aa~lA~~L~AdkLi~lTDV~GV~~~~-~dp~~-lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G 336 (358)
.-..++...++.+++++.|.||-+... ++|+. . |-+....+++.+..+.. +.|++|
T Consensus 86 ~~~~~~~~~~~~~~ll~lDyDGTL~PIv~~P~~A~---------------------~~~~~~~aL~~La~~~~-vaIvSG 143 (354)
T PLN02151 86 MFEEILHKSEGKQIVMFLDYDGTLSPIVDDPDRAF---------------------MSKKMRNTVRKLAKCFP-TAIVSG 143 (354)
T ss_pred HHHHHHHhhcCCceEEEEecCccCCCCCCCccccc---------------------CCHHHHHHHHHHhcCCC-EEEEEC
Confidence 345556667788999999999988742 23432 2 22334455555555655 888888
Q ss_pred CCcchHHHHHHc
Q 018330 337 RVEHSLLLEILT 348 (358)
Q Consensus 337 ~~~~~Ll~el~~ 348 (358)
|....| .+++.
T Consensus 144 R~~~~l-~~~~~ 154 (354)
T PLN02151 144 RCREKV-SSFVK 154 (354)
T ss_pred CCHHHH-HHHcC
Confidence 887765 55553
No 110
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=34.12 E-value=2.1e+02 Score=26.76 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=18.8
Q ss_pred cChHHHHHHHHHHcCCCeEEEee
Q 018330 254 INADTVAGELAAALGAEKLILLT 276 (358)
Q Consensus 254 i~sD~~Aa~lA~~L~AdkLi~lT 276 (358)
.|+|.+ +.||..|||++++|..
T Consensus 158 TDGDRA-a~LA~~lgA~~I~l~G 179 (232)
T COG1634 158 TDGDRA-AFLAYYLGAEKIRLVG 179 (232)
T ss_pred CCchHH-HHHHHHhCCCeEEEee
Confidence 389985 7899999999999874
No 111
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=34.11 E-value=3.3e+02 Score=26.28 Aligned_cols=144 Identities=26% Similarity=0.338 Sum_probs=71.8
Q ss_pred HHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHH-HhHHHHHcCCCccccC
Q 018330 78 VDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPE-INFWLKRFGIEPVFRD 156 (358)
Q Consensus 78 ~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~-i~~~l~~~gi~~~~~~ 156 (358)
.+.|++.+..++...++.+=| +.+... +.. . +.+..+.+.|.++|.+++|-+. .-..+++.|+.- +
T Consensus 47 ~~~l~~~i~~~~~~t~~pfgv----n~~~~~--~~~-~---~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v-~-- 113 (307)
T TIGR03151 47 PDVVRKEIRKVKELTDKPFGV----NIMLLS--PFV-D---ELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKV-I-- 113 (307)
T ss_pred HHHHHHHHHHHHHhcCCCcEE----eeecCC--CCH-H---HHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEE-E--
Confidence 556667667777665555422 222221 221 2 2233344568899988876553 112233333321 0
Q ss_pred CcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCC
Q 018330 157 GLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGH 236 (358)
Q Consensus 157 g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~ 236 (358)
..+++ ......+.+.|+..+.++|.+.+ ||.|.. -+.+.+.++.+.-.
T Consensus 114 -~~v~s----------------~~~a~~a~~~GaD~Ivv~g~eag-------------Gh~g~~--~~~~ll~~v~~~~~ 161 (307)
T TIGR03151 114 -PVVAS----------------VALAKRMEKAGADAVIAEGMESG-------------GHIGEL--TTMALVPQVVDAVS 161 (307)
T ss_pred -EEcCC----------------HHHHHHHHHcCCCEEEEECcccC-------------CCCCCC--cHHHHHHHHHHHhC
Confidence 01111 12334556778888777654221 233321 14566666666556
Q ss_pred eEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEee
Q 018330 237 IPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLT 276 (358)
Q Consensus 237 IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lT 276 (358)
+||+.. |.+. |...+++.++ +||+-+.+.|
T Consensus 162 iPviaa------GGI~--~~~~~~~al~--~GA~gV~iGt 191 (307)
T TIGR03151 162 IPVIAA------GGIA--DGRGMAAAFA--LGAEAVQMGT 191 (307)
T ss_pred CCEEEE------CCCC--CHHHHHHHHH--cCCCEeecch
Confidence 898764 2221 2444555554 6887665443
No 112
>KOG1780 consensus Small Nuclear ribonucleoprotein G [RNA processing and modification]
Probab=33.52 E-value=31 Score=26.32 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.1
Q ss_pred hhHHHHhhcCCeEEEEECCcccC
Q 018330 84 SLPFIQKFRGKTIVVKYGGAAMK 106 (358)
Q Consensus 84 a~pyi~~~~~k~iVIKlGGs~l~ 106 (358)
+.|-+++|..|.+++|++|+--.
T Consensus 5 g~PeLkkymdKki~lklnG~r~v 27 (77)
T KOG1780|consen 5 GHPELKKYMDKKIVLKLNGGRKV 27 (77)
T ss_pred cCchHHHhhhheEEEEeCCCcEE
Confidence 36788899999999999998644
No 113
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=33.44 E-value=1.1e+02 Score=29.62 Aligned_cols=143 Identities=20% Similarity=0.309 Sum_probs=70.7
Q ss_pred HHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCccccChHH
Q 018330 179 KSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADT 258 (358)
Q Consensus 179 ~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~ 258 (358)
+.+++.+.+.|+..+-+.|..|...+-.. -+-.++ .+...+ .-.|.+|||.|++.+...+. .
T Consensus 28 ~~lv~~li~~Gv~gi~~~GttGE~~~Ls~----------eEr~~v-~~~~v~-~~~grvpviaG~g~~~t~ea------i 89 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVLGTTGESPTLTL----------EERKEV-LEAVVE-AVGGRVPVIAGVGSNSTAEA------I 89 (299)
T ss_pred HHHHHHHHHcCCCEEEECCCCccchhcCH----------HHHHHH-HHHHHH-HHCCCCcEEEecCCCcHHHH------H
Confidence 34677788889887666553332211000 000111 122222 23788999999764322111 1
Q ss_pred HHHHHHHHcCCCeEEEeec------cccccccc--------------cccCcccccccHHHHHHHHhCCCC-----CCCc
Q 018330 259 VAGELAAALGAEKLILLTD------VAGILENR--------------EDPMSLVKEIDIKGVKKMIEDGKV-----GGGM 313 (358)
Q Consensus 259 ~Aa~lA~~L~AdkLi~lTD------V~GV~~~~--------------~dp~~lI~~I~~~e~~~l~~~~~v-----tGGM 313 (358)
--+..|+.+|||-++.++- -.|+|... +-|...-..++.+.+.++.....+ +.|=
T Consensus 90 ~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd 169 (299)
T COG0329 90 ELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGD 169 (299)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCcC
Confidence 1256678889998887742 34444321 013333445667777777663221 2333
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcch
Q 018330 314 IPKVNCCIRSLAQGVRTASIIDGRVEHS 341 (358)
Q Consensus 314 ~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~ 341 (358)
...+...+.. .+.....+.+|.+...
T Consensus 170 ~~~~~~~~~~--~~~~~f~v~~G~d~~~ 195 (299)
T COG0329 170 LDRLEEIIAA--LGDRDFIVLSGDDELA 195 (299)
T ss_pred HHHHHHHHHh--cCccCeeEEeCchHHH
Confidence 3333332222 2221367888866543
No 114
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=33.04 E-value=1.7e+02 Score=25.40 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=35.4
Q ss_pred HHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECCh
Q 018330 88 IQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGG 138 (358)
Q Consensus 88 i~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg 138 (358)
+.+..-+.+|+-+.|.....+.. .+...+.+-|..|++.|++++|+.++.
T Consensus 20 ~~~~~v~~vv~D~Dgtl~~~~~~-~~~pgv~e~L~~Lk~~g~~l~I~Sn~~ 69 (170)
T TIGR01668 20 LKKVGIKGVVLDKDNTLVYPDHN-EAYPALRDWIEELKAAGRKLLIVSNNA 69 (170)
T ss_pred HHHCCCCEEEEecCCccccCCCC-CcChhHHHHHHHHHHcCCEEEEEeCCc
Confidence 34444478999999888766431 233455666777888899999999874
No 115
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=32.99 E-value=88 Score=28.73 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=43.9
Q ss_pred HHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHH-h--HHHHHcCCCc
Q 018330 87 FIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEI-N--FWLKRFGIEP 152 (358)
Q Consensus 87 yi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i-~--~~l~~~gi~~ 152 (358)
++.+| +.+++-+.|..... ........+-|..|++.|+++++|....... . ..++++|++.
T Consensus 4 ~~~~~--~~~~~D~dG~l~~~---~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 4 LINDY--DVFLLDLWGVIIDG---NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINA 67 (242)
T ss_pred hhhcC--CEEEEecccccccC---CccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCc
Confidence 45556 57899999988876 3344566777778888999999998875432 2 4567788764
No 116
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=32.92 E-value=87 Score=25.52 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=28.5
Q ss_pred eEEEEECCcccCCC-----Ch-hHHHHHHHHHHHHhHhCCCeEEEEECCh
Q 018330 95 TIVVKYGGAAMKPN-----QK-DNLLASVVKDLVLLSVVGLRPVLVHGGG 138 (358)
Q Consensus 95 ~iVIKlGGs~l~~k-----~~-~~l~~~~~~~Ia~L~~~G~~vVLVhGgg 138 (358)
.+++=++|..+... .. ..+...+.+-|..|++.|++++|+.++.
T Consensus 2 ~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred EEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCc
Confidence 46666777766321 00 1223456667777888999999998875
No 117
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=32.26 E-value=76 Score=31.97 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=37.5
Q ss_pred ChhhhHHHHHhhhHHHHhhcCCeEEEEECCc--------ccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH
Q 018330 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGA--------AMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP 139 (358)
Q Consensus 73 ~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs--------~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~ 139 (358)
+..+-+..+.+.+..-+.++|+.++|--|+. .|++.+....-..+++ .+...|.+|+++||-+.
T Consensus 165 ~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~---~~~~~Ga~V~~~~g~~~ 236 (390)
T TIGR00521 165 EPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAE---AAYKRGADVTLITGPVS 236 (390)
T ss_pred CHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHH---HHHHCCCEEEEeCCCCc
Confidence 4444445555544433458899988887775 3444332222123333 24567999999997753
No 118
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=31.97 E-value=1.2e+02 Score=27.18 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=37.7
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCC
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIE 151 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~ 151 (358)
++.=+.|..+.++.. ......+.|..|++.|++++++.|-.. .+...++.+++.
T Consensus 2 i~~DlDGTLL~~~~~--~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY--DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCC--CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 566788999976431 112345677778889999999999855 345667777765
No 119
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=31.70 E-value=1.1e+02 Score=28.15 Aligned_cols=56 Identities=21% Similarity=0.393 Sum_probs=41.1
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHH-HhHHHHHcCCC
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPE-INFWLKRFGIE 151 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~-i~~~l~~~gi~ 151 (358)
|.++.-+.|..+.++. .+-+...+.|..+++.|+++++..|=... +...++++++.
T Consensus 4 kli~~DlDGTLl~~~~--~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 4 KLIAIDMDGTLLLPDH--TISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred EEEEEecCCcCcCCCC--ccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 6788899999998632 22244567788888999999999887543 34566777764
No 120
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=31.44 E-value=68 Score=29.31 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=26.1
Q ss_pred HHHhHhCCCeEEEEECChH-HHhHHHHHcCCCcc
Q 018330 121 LVLLSVVGLRPVLVHGGGP-EINFWLKRFGIEPV 153 (358)
Q Consensus 121 Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~~~ 153 (358)
+..+++.|++++||+||-. .++...+++|+...
T Consensus 86 v~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~ 119 (212)
T COG0560 86 VAALKAAGAKVVIISGGFTFLVEPIAERLGIDYV 119 (212)
T ss_pred HHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchh
Confidence 4457788999999999966 55778888988753
No 121
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=31.19 E-value=1.2e+02 Score=28.37 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=42.0
Q ss_pred CCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCCc
Q 018330 93 GKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIEP 152 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~~ 152 (358)
-|.++.=+.|..+.++. ...+...+.|..|++.|++++++.|-.. .+...++++++..
T Consensus 4 ~kli~~DlDGTLl~~~~--~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~ 62 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT--YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLED 62 (273)
T ss_pred ceEEEEcCcccCcCCCC--cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC
Confidence 46888999999998532 1223456667788889999999988753 4566777888764
No 122
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=30.87 E-value=1.5e+02 Score=26.51 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=39.8
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCC
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIE 151 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~ 151 (358)
|.++.=+.|..+.++. .+-....+.|..|++.|++++++.|-.. .+...++.+++.
T Consensus 2 k~v~~DlDGTLl~~~~--~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR--MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred cEEEEecCCCcCCCCc--ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 4678889999997632 2334557778888889999999998854 345556666665
No 123
>PLN03017 trehalose-phosphatase
Probab=30.64 E-value=2.1e+02 Score=28.74 Aligned_cols=65 Identities=20% Similarity=0.371 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeeccccccccc-cccCc-ccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEE
Q 018330 256 ADTVAGELAAALGAEKLILLTDVAGILENR-EDPMS-LVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASI 333 (358)
Q Consensus 256 sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~-~dp~~-lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~I 333 (358)
+-.....++...+..++++++|.||-+... ++|+. .++ +++..+++.+..++. +.|
T Consensus 96 al~~~~~~~~~~~~k~~llflD~DGTL~Piv~~p~~a~i~---------------------~~~~~aL~~La~~~~-vaI 153 (366)
T PLN03017 96 ALEMFEQIMEASRGKQIVMFLDYDGTLSPIVDDPDKAFMS---------------------SKMRRTVKKLAKCFP-TAI 153 (366)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCCcCcCCcCCcccccCC---------------------HHHHHHHHHHhcCCc-EEE
Confidence 445556677777888999999999988732 13432 222 233344444445555 677
Q ss_pred EeCCCcchH
Q 018330 334 IDGRVEHSL 342 (358)
Q Consensus 334 i~G~~~~~L 342 (358)
++||....+
T Consensus 154 vSGR~~~~l 162 (366)
T PLN03017 154 VTGRCIDKV 162 (366)
T ss_pred EeCCCHHHH
Confidence 777766554
No 124
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=30.39 E-value=1.9e+02 Score=27.76 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=32.0
Q ss_pred hhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHH----hHhCCC-----eEEEEECChHHHhH
Q 018330 76 FRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVL----LSVVGL-----RPVLVHGGGPEINF 143 (358)
Q Consensus 76 ~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~----L~~~G~-----~vVLVhGgg~~i~~ 143 (358)
...+.|.+.-.+++++ +.++-..=|--.+-+...++..++-+++|.- |...|. .+|++|+||..+++
T Consensus 84 ~~~~~l~~iG~~~~~~-~iRls~HP~qf~vLnSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK 159 (275)
T PF03851_consen 84 EFAEELAEIGDLAKEN-GIRLSMHPDQFTVLNSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDK 159 (275)
T ss_dssp HHHHHHHHHHHHHHHT-T-EEEE---TT--TT-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-H
T ss_pred HHHHHHHHHHHHHHHc-CCeEEecCCcceeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCCh
Confidence 3445555555566655 6677777775555444345555666666652 334453 58999999987654
No 125
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=30.10 E-value=1.3e+02 Score=28.04 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=42.3
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCCc
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIEP 152 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~~ 152 (358)
|.++.=+.|..+.++. .+.....+.|..|++.|++++++.|=.. .+...++++++..
T Consensus 3 kli~~DlDGTLl~~~~--~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 60 (272)
T PRK15126 3 RLAAFDMDGTLLMPDH--HLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDA 60 (272)
T ss_pred cEEEEeCCCcCcCCCC--cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCC
Confidence 6788899999998632 2224457778888899999999988754 3456677888764
No 126
>PTZ00174 phosphomannomutase; Provisional
Probab=29.89 E-value=67 Score=29.72 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=33.6
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP 139 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~ 139 (358)
|.++.=+.|..+.++.. +.....+.|..+++.|+++++..|-..
T Consensus 6 klia~DlDGTLL~~~~~--is~~~~~ai~~l~~~Gi~~viaTGR~~ 49 (247)
T PTZ00174 6 TILLFDVDGTLTKPRNP--ITQEMKDTLAKLKSKGFKIGVVGGSDY 49 (247)
T ss_pred eEEEEECcCCCcCCCCC--CCHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 67888999999987532 223456778888889999999988643
No 127
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=29.52 E-value=2.3e+02 Score=23.59 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=26.0
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP 139 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~ 139 (358)
++|=+||..-.+...+.+..++-..+..+++...+.||+.||.+
T Consensus 2 ~IvVLG~~~~~~~~~~~~~~R~~~a~~l~~~~~~~~ii~sGg~~ 45 (150)
T cd06259 2 AIVVLGGGVNGDGPSPILAERLDAAAELYRAGPAPKLIVSGGQG 45 (150)
T ss_pred EEEEeCCccCCCCCChHHHHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 46678888877654334444544444444443356777777743
No 128
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=29.11 E-value=64 Score=28.64 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=23.0
Q ss_pred HHHHHHHhHhCCCeEEEEECChHHHhHHHHH
Q 018330 117 VVKDLVLLSVVGLRPVLVHGGGPEINFWLKR 147 (358)
Q Consensus 117 ~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~ 147 (358)
+.+.+..|++.|.+-|+|+||+...+..+++
T Consensus 123 l~~~l~~L~~~g~~~i~v~GG~~l~~~~l~~ 153 (200)
T PF01872_consen 123 LEEALRRLKERGGKDILVEGGGSLNGSFLRA 153 (200)
T ss_dssp HHHHHHHHHHTTTSEEEEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCEEEEechHHHHHHHHhC
Confidence 4555666777799999999998776665543
No 129
>PRK10976 putative hydrolase; Provisional
Probab=28.95 E-value=1.4e+02 Score=27.62 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=41.9
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHH-HhHHHHHcCCCc
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPE-INFWLKRFGIEP 152 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~-i~~~l~~~gi~~ 152 (358)
|.++.=+.|..+.++. .+-....+.|..+++.|++++|..|=... +...++.+++..
T Consensus 3 kli~~DlDGTLl~~~~--~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 60 (266)
T PRK10976 3 QVVASDLDGTLLSPDH--TLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKS 60 (266)
T ss_pred eEEEEeCCCCCcCCCC--cCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCC
Confidence 6788899999998743 22244577788898999999999987553 345667777764
No 130
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=28.75 E-value=1.4e+02 Score=27.60 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=43.9
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCCc
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIEP 152 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~~ 152 (358)
|.+++=+.|..+.++.. ......+.|..+++.|++++|+.|-.. .+...++.+++..
T Consensus 4 kli~~DlDGTLl~~~~~--i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 4 KLLAFDLDGTLLDSNKT--ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred eEEEEcCCCCccCCCCc--cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 67888899999988532 334566677788899999999998865 4567778888875
No 131
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=28.27 E-value=2.1e+02 Score=25.06 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=39.8
Q ss_pred hhhHHHHhhcC--CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHH
Q 018330 83 ESLPFIQKFRG--KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWL 145 (358)
Q Consensus 83 ~a~pyi~~~~~--k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l 145 (358)
|+.....+... ..+++-+-|..+++ +.+++.|..++..|..++++.||....+..+
T Consensus 56 E~~~il~~i~~~~~vi~Ld~~Gk~~sS-------e~fA~~l~~~~~~G~~i~f~IGG~~Gl~~~~ 113 (155)
T COG1576 56 EGEAILAAIPKGSYVVLLDIRGKALSS-------EEFADFLERLRDDGRDISFLIGGADGLSEAV 113 (155)
T ss_pred HHHHHHHhcCCCCeEEEEecCCCcCCh-------HHHHHHHHHHHhcCCeEEEEEeCcccCCHHH
Confidence 44444444433 46777788888888 4567788888888988999999976655544
No 132
>PLN02580 trehalose-phosphatase
Probab=27.56 E-value=2.1e+02 Score=28.80 Aligned_cols=67 Identities=22% Similarity=0.374 Sum_probs=41.9
Q ss_pred HHHHHHHcCCCeEEEeeccccccccc-cccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCC
Q 018330 260 AGELAAALGAEKLILLTDVAGILENR-EDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRV 338 (358)
Q Consensus 260 Aa~lA~~L~AdkLi~lTDV~GV~~~~-~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~ 338 (358)
-..++..-+..+++++.|.||-+... ++|+... |-+.+..+++.+..-.+ |.|++||.
T Consensus 108 ~~~~~~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~--------------------~s~~~~~aL~~La~~~~-VAIVSGR~ 166 (384)
T PLN02580 108 FEQIANFAKGKKIALFLDYDGTLSPIVDDPDRAL--------------------MSDAMRSAVKNVAKYFP-TAIISGRS 166 (384)
T ss_pred HHHHHHHhhcCCeEEEEecCCccCCCCCCccccc--------------------CCHHHHHHHHHHhhCCC-EEEEeCCC
Confidence 34566667788899999999988653 3453211 12333444444444344 89999998
Q ss_pred cchHHHHHHc
Q 018330 339 EHSLLLEILT 348 (358)
Q Consensus 339 ~~~Ll~el~~ 348 (358)
...| .+++.
T Consensus 167 ~~~L-~~~l~ 175 (384)
T PLN02580 167 RDKV-YELVG 175 (384)
T ss_pred HHHH-HHHhC
Confidence 7775 56654
No 133
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=27.54 E-value=1.2e+02 Score=26.33 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=27.7
Q ss_pred HHHHHHHHhHhCCCeEEEEECCh-HHHhHHHHHcCCCc
Q 018330 116 SVVKDLVLLSVVGLRPVLVHGGG-PEINFWLKRFGIEP 152 (358)
Q Consensus 116 ~~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l~~~gi~~ 152 (358)
.+.+-|..|++.|++++||+++- ..+...++.+|+..
T Consensus 84 g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~ 121 (201)
T TIGR01491 84 YAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY 121 (201)
T ss_pred cHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe
Confidence 34555667778899999999984 45677788888764
No 134
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=27.44 E-value=83 Score=28.99 Aligned_cols=57 Identities=16% Similarity=0.396 Sum_probs=41.9
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHH-HhHHHHHcCCCc
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPE-INFWLKRFGIEP 152 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~-i~~~l~~~gi~~ 152 (358)
|.++.=+.|..+.++.. +.....+.|..+++.|++++|..|=... +...++++++..
T Consensus 4 kli~~DlDGTLl~~~~~--i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (272)
T PRK10530 4 RVIALDLDGTLLTPKKT--ILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALDT 61 (272)
T ss_pred cEEEEeCCCceECCCCc--cCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCC
Confidence 68888999999987431 2234567788899999999999887543 345667777753
No 135
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=27.40 E-value=1.6e+02 Score=28.67 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=41.7
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECCh-HHHhHHHHHcCCCccc
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGG-PEINFWLKRFGIEPVF 154 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l~~~gi~~~~ 154 (358)
|.|+.=+.|..+.+++. ..+...+.|..|++.|+.+|+..|-- ..+..+.+++++...+
T Consensus 2 KLIftDLDGTLLd~~~~--~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p~ 61 (302)
T PRK12702 2 RLVLSSLDGSLLDLEFN--SYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHPF 61 (302)
T ss_pred cEEEEeCCCCCcCCCCc--CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeE
Confidence 67888999999986331 22345666888888999999998873 3445666777776433
No 136
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=26.32 E-value=76 Score=29.15 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=25.5
Q ss_pred HHhHhCCCeEEEEECC-hHHHhHHHHHcCCCc
Q 018330 122 VLLSVVGLRPVLVHGG-GPEINFWLKRFGIEP 152 (358)
Q Consensus 122 a~L~~~G~~vVLVhGg-g~~i~~~l~~~gi~~ 152 (358)
..|+..|.++.|++|| -..+.....++|++-
T Consensus 98 ~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 98 SRLHARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred HHHHHcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 3578889999999999 666777788888874
No 137
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=26.10 E-value=6.6e+02 Score=24.98 Aligned_cols=72 Identities=19% Similarity=0.390 Sum_probs=42.8
Q ss_pred cCHHHHHHHHhCCCeEEEcCCccCCCCCccccChHHH--HHHHHHHcCCCeEEEeeccccccccccccC-cccccccHHH
Q 018330 223 VDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV--AGELAAALGAEKLILLTDVAGILENREDPM-SLVKEIDIKG 299 (358)
Q Consensus 223 i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~--Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~-~lI~~I~~~e 299 (358)
.|...|..+-+.-.+||+.....+ .| +.|.+ ++..|.++|||-+++=+.. ++..++ .---.++++|
T Consensus 274 ldl~~i~~lk~~~~~PV~~d~~Hs-~G-----~r~~~~~~a~aAva~GAdg~~iE~H~-----dp~~a~~D~~~sl~p~e 342 (360)
T PRK12595 274 LDISAVPILKQETHLPVMVDVTHS-TG-----RRDLLLPTAKAALAIGADGVMAEVHP-----DPAVALSDSAQQMDIPE 342 (360)
T ss_pred cCHHHHHHHHHHhCCCEEEeCCCC-Cc-----chhhHHHHHHHHHHcCCCeEEEEecC-----CCCCCCCchhhhCCHHH
Confidence 477777776654558887632211 12 35566 7888999999966655443 211111 1235577888
Q ss_pred HHHHHh
Q 018330 300 VKKMIE 305 (358)
Q Consensus 300 ~~~l~~ 305 (358)
+++++.
T Consensus 343 l~~l~~ 348 (360)
T PRK12595 343 FDRFLD 348 (360)
T ss_pred HHHHHH
Confidence 888764
No 138
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=25.81 E-value=1e+02 Score=31.21 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=35.2
Q ss_pred ChhhhHHHHHhhhHHHHhhcCCeEEEEECCc--------ccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECCh
Q 018330 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGA--------AMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGG 138 (358)
Q Consensus 73 ~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs--------~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg 138 (358)
+..+-+..+...+.. +.+.|++++|--||. .+++.+...+-..+++. +...|.++++++|-.
T Consensus 169 ~~~~I~~~~~~~~~~-~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~---l~~~Ga~V~~v~~~~ 238 (399)
T PRK05579 169 EPEEIVAAAERALSP-KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARA---AARRGADVTLVSGPV 238 (399)
T ss_pred CHHHHHHHHHHHhhh-cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHH---HHHCCCEEEEeCCCc
Confidence 444555555555433 557888888876654 23332222222233333 446799999999764
No 139
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=25.51 E-value=1.6e+02 Score=27.44 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=40.8
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCC
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIE 151 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~ 151 (358)
+.++.=+.|..+.++.. .-+...+.|..|++.|+++|+..|-.. .+...++++++.
T Consensus 8 ~lI~~DlDGTLL~~~~~--i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 8 LLIFTDLDGTLLDSHTY--DWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred eEEEEeCccCCcCCCCc--CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 57888999999987432 113455678888899999999998854 345567778774
No 140
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=25.36 E-value=1.7e+02 Score=26.71 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=36.1
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCCc
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIEP 152 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~~ 152 (358)
++.=+.|..+.++. ......+.|..|++.|+++|++.|-.. .+...++++|+..
T Consensus 2 i~~DlDGTLl~~~~---~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~ 56 (225)
T TIGR02461 2 IFTDLDGTLLPPGY---EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEP 56 (225)
T ss_pred EEEeCCCCCcCCCC---CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 55667888887522 123457777788889999999976643 3445566777643
No 141
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=24.80 E-value=3.7e+02 Score=25.59 Aligned_cols=130 Identities=20% Similarity=0.310 Sum_probs=66.5
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCH----HHHHHHHh--CCCeEEEcCCccCCCCCccc
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDP----TVIEPLVN--SGHIPVIASVAADEFGQSYN 253 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~----~~I~~lL~--~G~IPVi~gv~~~~~G~~~~ 253 (358)
.+++.+.+.|+..+-+.|..+.. ...+. +.++...+ .|.+||+.+++.+
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~------------------~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~------- 84 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEF------------------FSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGN------- 84 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCc------------------ccCCHHHHHHHHHHHHHHhCCCCcEEEecCcc-------
Confidence 46667778898876665533322 22221 12222222 6889999997421
Q ss_pred cChHH-HHHHHHHHcCCCeEEEeecc------ccccccccc--cCccc---------ccccHHHHHHHHh-CCC-----C
Q 018330 254 INADT-VAGELAAALGAEKLILLTDV------AGILENRED--PMSLV---------KEIDIKGVKKMIE-DGK-----V 309 (358)
Q Consensus 254 i~sD~-~Aa~lA~~L~AdkLi~lTDV------~GV~~~~~d--p~~lI---------~~I~~~e~~~l~~-~~~-----v 309 (358)
+ .|. -.+..|..+|||.++++... +++++.... ...-+ -.++.+.+.++.+ ... -
T Consensus 85 t-~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKd 163 (296)
T TIGR03249 85 T-SDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKD 163 (296)
T ss_pred H-HHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEe
Confidence 1 122 24567788999988776431 222221100 00001 1456677777765 221 1
Q ss_pred CCCcHHHHHHHHHHHHcCCCEEEEEeCCC
Q 018330 310 GGGMIPKVNCCIRSLAQGVRTASIIDGRV 338 (358)
Q Consensus 310 tGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~ 338 (358)
+.|-..++...++.. + ++..|++|..
T Consensus 164 s~~d~~~~~~~~~~~--~-~~~~v~~G~~ 189 (296)
T TIGR03249 164 GIGDMEQMIEITQRL--G-DRLGYLGGMP 189 (296)
T ss_pred CCCCHHHHHHHHHHc--C-CCeEEEeCCC
Confidence 234445555544322 3 2478999973
No 142
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=24.74 E-value=1.6e+02 Score=25.72 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=25.9
Q ss_pred HHHHHHHHhHhCCCeEEEEECCh-HHHhHHHHHcCCCc
Q 018330 116 SVVKDLVLLSVVGLRPVLVHGGG-PEINFWLKRFGIEP 152 (358)
Q Consensus 116 ~~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l~~~gi~~ 152 (358)
...+-|..+++.|++++||.++- ..+...++++|+..
T Consensus 91 ~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~ 128 (202)
T TIGR01490 91 EARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN 128 (202)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc
Confidence 33444555677899999999874 45677777777764
No 143
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=24.51 E-value=3.9e+02 Score=25.53 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=23.0
Q ss_pred CCCeEEEcCCccCCCCCccccChHHH--HHHHHHHcCCCeEEEee
Q 018330 234 SGHIPVIASVAADEFGQSYNINADTV--AGELAAALGAEKLILLT 276 (358)
Q Consensus 234 ~G~IPVi~gv~~~~~G~~~~i~sD~~--Aa~lA~~L~AdkLi~lT 276 (358)
.|.+||+.+++.. +.+.+ .+.-|..+|||-+++..
T Consensus 67 ~g~~pvi~gv~~~--------~t~~ai~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 67 AGRIPFAPGTGAL--------NHDETLELTKFAEEAGADAAMVIV 103 (294)
T ss_pred CCCCcEEEECCcc--------hHHHHHHHHHHHHHcCCCEEEEcC
Confidence 6889999987532 12222 34557888998877764
No 144
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=23.87 E-value=1.6e+02 Score=27.06 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=37.0
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCC
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIE 151 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~ 151 (358)
++.=+.|..+.++.. ......+.|..|++.|++++++.|-.. .+...++++++.
T Consensus 2 i~~DlDGTll~~~~~--~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 2 IFTDLDGTLLDPHGY--DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred EEEcCCCCCcCCCCc--CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 455677888876321 123346677778888999999987754 345677888875
No 145
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=23.85 E-value=1.2e+02 Score=28.09 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=37.3
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH----HHhHHHHHcCCC
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP----EINFWLKRFGIE 151 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~----~i~~~l~~~gi~ 151 (358)
+.+++=+-|..+... .......+.|..|++.|.+++++.+++. .....++++|++
T Consensus 2 ~~~~~D~DGtl~~~~---~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 2 KGYLIDLDGTMYKGK---ERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred CEEEEeCCCceEcCC---eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 456777888887763 2233456777788889999999998532 333456667765
No 146
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=23.47 E-value=1.6e+02 Score=22.95 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=25.5
Q ss_pred HHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCC
Q 018330 115 ASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIE 151 (358)
Q Consensus 115 ~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~ 151 (358)
..+.+-|..|++.|++++++.|+.. .....++++++.
T Consensus 27 ~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~ 64 (139)
T cd01427 27 PGVKEALKELKEKGIKLALATNKSRREVLELLEELGLD 64 (139)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCc
Confidence 4556666777778999999998854 345556666653
No 147
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=23.47 E-value=1e+02 Score=28.76 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=37.6
Q ss_pred CeEEEEECCcccCCCCh-hHHHHHHHHHHHHhHhCCCeEEEEECChHH----HhHHHHHcCCC
Q 018330 94 KTIVVKYGGAAMKPNQK-DNLLASVVKDLVLLSVVGLRPVLVHGGGPE----INFWLKRFGIE 151 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~-~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~----i~~~l~~~gi~ 151 (358)
+.++.=+-|..+...++ ........+.|..|++.|++++++.+.... ....++++|++
T Consensus 2 k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred CEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 35666677777765220 113455677788888899999999987543 33445666654
No 148
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=23.46 E-value=1.6e+02 Score=29.26 Aligned_cols=49 Identities=24% Similarity=0.450 Sum_probs=36.6
Q ss_pred CeEEEEECCcccCCCCh----------------------hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhH
Q 018330 94 KTIVVKYGGAAMKPNQK----------------------DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINF 143 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----------------------~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~ 143 (358)
+.|.|-+||.++..... |+ .+.+.+.|...++.++.++|-.|||+.++.
T Consensus 30 ~kVLi~YGGGSIKrnGvydqV~~~Lkg~~~~E~~GVEPNP~-~~Tv~kaV~i~kee~idflLAVGGGSViD~ 100 (384)
T COG1979 30 AKVLIVYGGGSIKKNGVYDQVVEALKGIEVIEFGGVEPNPR-LETLMKAVEICKEENIDFLLAVGGGSVIDG 100 (384)
T ss_pred CeEEEEecCccccccchHHHHHHHhcCceEEEecCCCCCch-HHHHHHHHHHHHHcCceEEEEecCcchhhh
Confidence 67777788777765310 22 256788888888999999999999998763
No 149
>KOG1783 consensus Small nuclear ribonucleoprotein F [RNA processing and modification]
Probab=22.89 E-value=81 Score=24.03 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=17.6
Q ss_pred HHHHhhcCCeEEEEECCcccCC
Q 018330 86 PFIQKFRGKTIVVKYGGAAMKP 107 (358)
Q Consensus 86 pyi~~~~~k~iVIKlGGs~l~~ 107 (358)
.++..+.|++++||+-..+.=.
T Consensus 9 ~fl~~iiGr~V~VKl~sgvdyr 30 (77)
T KOG1783|consen 9 EFLKAIIGRTVVVKLNSGVDYR 30 (77)
T ss_pred HHHHHHhCCeEEEEecCCcccc
Confidence 4678899999999998776443
No 150
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=22.56 E-value=1.6e+02 Score=24.90 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=24.0
Q ss_pred HHHHHHHhHhCCCeEEEEECCh-HHHhHHHHHcCCC
Q 018330 117 VVKDLVLLSVVGLRPVLVHGGG-PEINFWLKRFGIE 151 (358)
Q Consensus 117 ~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l~~~gi~ 151 (358)
+.+-+..+++.|++++||+|+- ..+...++.+|+.
T Consensus 78 ~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 78 ARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred HHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 3444455667899999998883 4556667777665
No 151
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=22.42 E-value=4.1e+02 Score=21.27 Aligned_cols=76 Identities=26% Similarity=0.319 Sum_probs=53.3
Q ss_pred hhhHHHHHhhhH-HHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcc
Q 018330 75 EFRVDILSESLP-FIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153 (358)
Q Consensus 75 ~~~~~~l~~a~p-yi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~ 153 (358)
..++.-|+|.+. ++..-..+.+||=+.+-..-| ..-...++.....++..|.+++|+ |--|.+...+...|+...
T Consensus 25 ~~~a~~~~e~~~~~~~~~~~~~ivIDls~v~~~d---S~gl~~L~~~~~~~~~~g~~~~l~-~i~p~v~~~~~~~gl~~~ 100 (117)
T COG1366 25 AARAPALKETLLEVIAASGARGLVIDLSGVDFMD---SAGLGVLVALLKSARLRGVELVLV-GIQPEVARTLELTGLDKS 100 (117)
T ss_pred hHHHHHHHHHHHHHHhcCCCcEEEEECCCCceec---hHHHHHHHHHHHHHHhcCCeEEEE-eCCHHHHHHHHHhCchhh
Confidence 455666777766 666655566999998877777 433456677777778888776665 556788888888888754
Q ss_pred c
Q 018330 154 F 154 (358)
Q Consensus 154 ~ 154 (358)
|
T Consensus 101 ~ 101 (117)
T COG1366 101 F 101 (117)
T ss_pred c
Confidence 3
No 152
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=21.76 E-value=3.9e+02 Score=20.86 Aligned_cols=42 Identities=36% Similarity=0.447 Sum_probs=25.6
Q ss_pred CHHHHHHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeec
Q 018330 224 DPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTD 277 (358)
Q Consensus 224 ~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTD 277 (358)
+.+.++.+.+.| ++++.|...+ .-.-.-|..-+|+.++.+|+
T Consensus 30 d~~~~~~~~~~~-~~~i~gd~~~-----------~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 30 DPERVEELREEG-VEVIYGDATD-----------PEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp SHHHHHHHHHTT-SEEEES-TTS-----------HHHHHHTTGGCESEEEEESS
T ss_pred CcHHHHHHHhcc-cccccccchh-----------hhHHhhcCccccCEEEEccC
Confidence 567788888888 7788875432 11122223346777777776
No 153
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=21.64 E-value=2.4e+02 Score=25.75 Aligned_cols=54 Identities=24% Similarity=0.420 Sum_probs=38.1
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCC
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIE 151 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~ 151 (358)
++.=+.|..+.++. .+-+...+.|..|++.|++++++.|-.. .+...++++++.
T Consensus 2 i~~DlDGTLl~~~~--~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 2 IFIDLDGTLLNDDH--TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred EEEeCCCCCCCCCC--ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 45667888887632 2223456778888889999999998864 345566777776
No 154
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=21.52 E-value=2.6e+02 Score=30.45 Aligned_cols=69 Identities=26% Similarity=0.251 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCCeEEEeeccccccccc-cccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHc--CCCEEEEEe
Q 018330 259 VAGELAAALGAEKLILLTDVAGILENR-EDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQ--GVRTASIID 335 (358)
Q Consensus 259 ~Aa~lA~~L~AdkLi~lTDV~GV~~~~-~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~--Gv~~v~Ii~ 335 (358)
....+...-.+.+-++++|.||-+... .+|... .+-+.+..+++.+.. |+. |.|++
T Consensus 480 ~~~~~~~y~~~~~rLi~~D~DGTL~~~~~~~~~~--------------------~~~~~~~~~L~~L~~d~g~~-V~ivS 538 (726)
T PRK14501 480 AEEIIARYRAASRRLLLLDYDGTLVPFAPDPELA--------------------VPDKELRDLLRRLAADPNTD-VAIIS 538 (726)
T ss_pred HHHHHHHHHhccceEEEEecCccccCCCCCcccC--------------------CCCHHHHHHHHHHHcCCCCe-EEEEe
Confidence 444555556778889999999988752 122110 112334444544444 776 99999
Q ss_pred CCCcchHHHHHHcC
Q 018330 336 GRVEHSLLLEILTD 349 (358)
Q Consensus 336 G~~~~~Ll~el~~~ 349 (358)
||..+.+ .++|..
T Consensus 539 GR~~~~l-~~~~~~ 551 (726)
T PRK14501 539 GRDRDTL-ERWFGD 551 (726)
T ss_pred CCCHHHH-HHHhCC
Confidence 9988876 667653
No 155
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=21.42 E-value=1.2e+02 Score=23.31 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHcCCC-eEEEeecccc
Q 018330 255 NADTVAGELAAALGAE-KLILLTDVAG 280 (358)
Q Consensus 255 ~sD~~Aa~lA~~L~Ad-kLi~lTDV~G 280 (358)
+.|.+...+..+|..+ .++-|||..|
T Consensus 21 s~dev~~~v~~Al~~~~~~l~LtD~kG 47 (74)
T PF11305_consen 21 SADEVEAAVTDALADGSGVLTLTDEKG 47 (74)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEeCCC
Confidence 7999999999999998 8888999887
No 156
>PRK10444 UMP phosphatase; Provisional
Probab=21.41 E-value=1.6e+02 Score=27.44 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=37.8
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHH-HhH---HHHHcCCC
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPE-INF---WLKRFGIE 151 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~-i~~---~l~~~gi~ 151 (358)
+.++.=+-|..+.. ........+.|..|++.|.+++++.+.+.. ... .+.++|++
T Consensus 2 ~~v~~DlDGtL~~~---~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~ 60 (248)
T PRK10444 2 KNVICDIDGVLMHD---NVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD 60 (248)
T ss_pred cEEEEeCCCceEeC---CeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 35677778888777 333455667778888899999999999763 233 34455664
No 157
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=20.92 E-value=6.4e+02 Score=26.61 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCC----CCCCCcHHH----------HHHH
Q 018330 255 NADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDG----KVGGGMIPK----------VNCC 320 (358)
Q Consensus 255 ~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~----~vtGGM~~K----------v~aA 320 (358)
|--.+|.... .-+||.|.|+ |.++-.+.+ ++ +....+-++++.+.- .+.||++.. ++.+
T Consensus 268 dPve~a~~y~-~~Gadel~~~-Di~~~~~~~--~~---~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~ 340 (538)
T PLN02617 268 KPVELAGQYY-KDGADEVAFL-NITGFRDFP--LG---DLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVA 340 (538)
T ss_pred CHHHHHHHHH-HcCCCEEEEE-ECCCCcCCc--cc---chhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHH
Confidence 4444444443 3589999988 888743321 11 111122233333221 234666655 7889
Q ss_pred HHHHHcCCCEEEEE
Q 018330 321 IRSLAQGVRTASII 334 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii 334 (358)
.+.++.|+.+|.|=
T Consensus 341 ~~~l~~GadkV~i~ 354 (538)
T PLN02617 341 SEYFRSGADKISIG 354 (538)
T ss_pred HHHHHcCCCEEEEC
Confidence 99999999987663
No 158
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=20.84 E-value=8.2e+02 Score=24.19 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCC------------eEEEeecccccccc
Q 018330 257 DTVAGELAAALGAE------------KLILLTDVAGILEN 284 (358)
Q Consensus 257 D~~Aa~lA~~L~Ad------------kLi~lTDV~GV~~~ 284 (358)
+.+|..|...+..- .++.+.|.=|++.+
T Consensus 206 ~~la~~It~~l~IPtIGIGAG~~cDGQVLV~~D~LG~~~~ 245 (332)
T PLN02424 206 APVAAAITSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQH 245 (332)
T ss_pred HHHHHHHHHhCCCCEEeecCCCCCCceeEeHHhhcCCCCC
Confidence 34667777766531 45566677777654
No 159
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=20.52 E-value=1.8e+02 Score=28.00 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=26.9
Q ss_pred HHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCCC
Q 018330 117 VVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGIE 151 (358)
Q Consensus 117 ~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi~ 151 (358)
+.+-+..|++.|+++.||+|| +..+...++++|+.
T Consensus 126 ~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~ 161 (277)
T TIGR01544 126 YENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVY 161 (277)
T ss_pred HHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCC
Confidence 444555677889999999999 66778888888774
No 160
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=20.22 E-value=2.7e+02 Score=30.56 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhHhCCCeEEEEECChHHH-hHHHHHcCCCc
Q 018330 113 LLASVVKDLVLLSVVGLRPVLVHGGGPEI-NFWLKRFGIEP 152 (358)
Q Consensus 113 l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i-~~~l~~~gi~~ 152 (358)
.++...+.|..|++.|++++++.|-.+.. ....+++|+..
T Consensus 443 ~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~ 483 (755)
T TIGR01647 443 PRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGT 483 (755)
T ss_pred ChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 45677888889999999999999986644 56778899864
Done!