Query 018330
Match_columns 358
No_of_seqs 226 out of 1434
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 13:35:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rd5_A Acetylglutamate kinase- 100.0 1.3E-60 4.6E-65 457.5 29.8 288 68-358 11-298 (298)
2 2ap9_A NAG kinase, acetylgluta 100.0 2.1E-59 7.2E-64 449.3 32.3 281 73-358 5-290 (299)
3 2v5h_A Acetylglutamate kinase; 100.0 7.5E-59 2.6E-63 449.6 33.1 281 74-358 30-310 (321)
4 2buf_A Acetylglutamate kinase; 100.0 1.3E-57 4.4E-62 437.2 34.8 279 74-358 7-296 (300)
5 2bty_A Acetylglutamate kinase; 100.0 1E-57 3.4E-62 434.1 31.8 277 75-358 3-279 (282)
6 3zzh_A Acetylglutamate kinase; 100.0 1.5E-54 5.1E-59 415.7 23.7 262 81-358 32-301 (307)
7 3d2m_A Putative acetylglutamat 100.0 2.8E-53 9.4E-58 428.3 28.1 273 75-358 25-303 (456)
8 3s6g_A N-acetylglutamate kinas 100.0 3.1E-53 1.1E-57 426.4 22.8 265 80-358 41-310 (460)
9 4ab7_A Protein Arg5,6, mitocho 100.0 1E-52 3.6E-57 422.0 23.8 265 78-358 29-301 (464)
10 3l86_A Acetylglutamate kinase; 100.0 8.9E-52 3E-56 392.0 23.9 234 94-337 37-270 (279)
11 3s6k_A Acetylglutamate kinase; 100.0 3.4E-52 1.2E-56 419.2 11.5 263 82-358 46-313 (467)
12 2egx_A Putative acetylglutamat 100.0 9.4E-49 3.2E-53 370.1 27.1 251 95-357 1-269 (269)
13 1gs5_A Acetylglutamate kinase; 100.0 1.3E-47 4.3E-52 360.1 27.6 254 94-357 3-257 (258)
14 3ll9_A Isopentenyl phosphate k 100.0 2.5E-47 8.6E-52 360.5 17.1 240 93-357 2-266 (269)
15 3k4o_A Isopentenyl phosphate k 100.0 1.4E-43 4.9E-48 334.2 16.3 236 91-358 3-264 (266)
16 2e9y_A Carbamate kinase; trans 100.0 2.9E-42 9.8E-47 332.9 18.9 256 92-358 3-315 (316)
17 3ll5_A Gamma-glutamyl kinase r 100.0 3.8E-42 1.3E-46 321.6 16.1 234 94-357 4-249 (249)
18 3d40_A FOMA protein; fosfomyci 100.0 8.4E-43 2.9E-47 332.2 10.9 246 86-358 17-282 (286)
19 2we5_A Carbamate kinase 1; arg 100.0 3.7E-41 1.3E-45 324.3 17.5 256 93-357 2-309 (310)
20 1e19_A Carbamate kinase-like c 100.0 6.8E-41 2.3E-45 323.0 18.8 256 92-358 1-314 (314)
21 2ogx_A Molybdenum storage prot 100.0 1.4E-38 4.9E-43 301.6 16.2 233 81-358 28-271 (276)
22 2ako_A Glutamate 5-kinase; str 100.0 2.7E-38 9.2E-43 295.4 17.8 233 94-357 2-251 (251)
23 2j5v_A Glutamate 5-kinase; pro 100.0 2.4E-37 8.1E-42 303.8 22.8 242 93-358 4-257 (367)
24 2j4j_A Uridylate kinase; trans 100.0 6E-37 2E-41 282.0 22.0 215 94-358 1-225 (226)
25 4a7w_A Uridylate kinase; trans 100.0 7.3E-37 2.5E-41 284.3 22.8 226 92-357 6-240 (240)
26 4axs_A Carbamate kinase; oxido 100.0 4E-36 1.4E-40 290.5 26.5 260 94-357 25-331 (332)
27 2ogx_B Molybdenum storage prot 100.0 9.7E-37 3.3E-41 288.1 17.8 238 78-358 19-269 (270)
28 2ij9_A Uridylate kinase; struc 100.0 8.6E-36 3E-40 272.9 21.9 212 94-357 1-219 (219)
29 2brx_A Uridylate kinase; UMP k 100.0 3E-36 1E-40 280.7 17.9 216 94-358 20-244 (244)
30 3ek6_A Uridylate kinase; UMPK 100.0 2.3E-34 7.9E-39 267.9 22.6 225 92-358 8-241 (243)
31 1z9d_A Uridylate kinase, UK, U 100.0 4.4E-34 1.5E-38 267.2 24.1 224 93-358 7-240 (252)
32 1ybd_A Uridylate kinase; alpha 100.0 9.6E-34 3.3E-38 262.4 25.5 224 93-358 7-239 (239)
33 2va1_A Uridylate kinase; UMPK, 100.0 3.8E-34 1.3E-38 268.3 22.9 230 85-357 15-255 (256)
34 2a1f_A Uridylate kinase; PYRH, 100.0 1.7E-33 5.8E-38 262.4 24.3 223 93-357 8-239 (247)
35 3kzf_A Carbamate kinase; argin 100.0 3.7E-34 1.3E-38 273.1 18.4 256 92-358 4-316 (317)
36 2jjx_A Uridylate kinase, UMP k 100.0 1.1E-32 3.7E-37 258.2 25.3 224 92-358 11-246 (255)
37 3nwy_A Uridylate kinase; allos 100.0 2.5E-33 8.6E-38 265.6 21.0 223 93-357 50-280 (281)
38 3ab4_A Aspartokinase; aspartat 100.0 6.5E-32 2.2E-36 270.0 24.0 230 94-357 2-242 (421)
39 3l76_A Aspartokinase; alloster 100.0 1.4E-28 4.8E-33 255.4 22.2 230 94-357 2-243 (600)
40 3c1m_A Probable aspartokinase; 100.0 4E-27 1.4E-31 238.5 20.9 238 94-358 1-300 (473)
41 2cdq_A Aspartokinase; aspartat 99.9 1.4E-23 4.8E-28 213.7 22.8 237 92-357 25-322 (510)
42 2j0w_A Lysine-sensitive aspart 99.9 1.3E-23 4.3E-28 211.4 18.8 230 93-357 2-290 (449)
43 3tvi_A Aspartokinase; structur 99.8 3.3E-20 1.1E-24 186.1 15.1 123 220-357 148-277 (446)
44 2pr7_A Haloacid dehalogenase/e 70.0 7.9 0.00027 29.9 5.7 56 94-152 3-59 (137)
45 3men_A Acetylpolyamine aminohy 59.6 20 0.00068 34.4 7.2 70 73-142 272-344 (362)
46 3pdw_A Uncharacterized hydrola 57.8 27 0.00092 30.5 7.4 55 94-151 7-65 (266)
47 3zxn_A RSBS, anti-sigma-factor 53.2 73 0.0025 25.0 8.6 73 75-151 24-97 (123)
48 3q9b_A Acetylpolyamine amidohy 53.1 19 0.00066 34.2 5.8 64 73-139 254-323 (341)
49 3gh1_A Predicted nucleotide-bi 52.3 16 0.00053 36.1 5.1 55 78-140 132-187 (462)
50 2gmw_A D,D-heptose 1,7-bisphos 51.3 11 0.00039 32.2 3.7 55 85-139 15-77 (211)
51 3qgm_A P-nitrophenyl phosphata 50.5 19 0.00066 31.5 5.2 56 94-152 9-68 (268)
52 3max_A HD2, histone deacetylas 41.4 35 0.0012 32.8 5.6 69 73-141 227-299 (367)
53 1zz1_A Histone deacetylase-lik 36.0 1.2E+02 0.004 29.0 8.4 67 73-139 237-312 (369)
54 4a69_A Histone deacetylase 3,; 34.2 47 0.0016 31.9 5.3 69 73-141 228-300 (376)
55 1u83_A Phosphosulfolactate syn 33.3 1.9E+02 0.0066 26.4 9.0 151 72-285 50-205 (276)
56 1qwg_A PSL synthase;, (2R)-pho 32.2 2.2E+02 0.0075 25.7 9.1 206 72-348 23-240 (251)
57 2obb_A Hypothetical protein; s 30.3 27 0.00094 28.7 2.5 45 93-137 3-49 (142)
58 1k1e_A Deoxy-D-mannose-octulos 29.7 67 0.0023 26.4 5.0 61 94-154 9-78 (180)
59 3bq9_A Predicted rossmann fold 27.4 53 0.0018 32.4 4.3 42 92-140 143-185 (460)
60 3fvv_A Uncharacterized protein 27.3 1E+02 0.0035 25.7 5.9 36 116-151 96-132 (232)
61 4dgh_A Sulfate permease family 27.0 2.2E+02 0.0074 21.9 8.0 70 78-152 35-104 (130)
62 2wm8_A MDP-1, magnesium-depend 26.4 75 0.0025 26.1 4.7 40 115-154 71-112 (187)
63 3ib6_A Uncharacterized protein 26.1 91 0.0031 25.7 5.2 38 115-152 37-78 (189)
64 3pgv_A Haloacid dehalogenase-l 26.1 83 0.0028 27.8 5.3 60 91-152 19-79 (285)
65 4fu0_A D-alanine--D-alanine li 25.8 3.9E+02 0.013 24.5 13.6 41 234-274 176-217 (357)
66 2wqp_A Polysialic acid capsule 25.4 3E+02 0.01 25.9 9.2 118 83-273 115-233 (349)
67 3l8h_A Putative haloacid dehal 24.9 60 0.002 26.2 3.8 45 94-138 2-53 (179)
68 2p9j_A Hypothetical protein AQ 24.0 1.2E+02 0.0042 23.9 5.5 61 94-154 10-79 (162)
69 1xpj_A Hypothetical protein; s 22.9 57 0.002 25.5 3.1 45 94-138 2-50 (126)
70 3ew8_A HD8, histone deacetylas 21.7 1.5E+02 0.005 28.6 6.2 69 73-141 236-308 (388)
71 3ghf_A Septum site-determining 21.7 1.2E+02 0.0041 23.9 4.8 54 91-152 45-99 (120)
72 1wr8_A Phosphoglycolate phosph 21.3 1.2E+02 0.004 25.9 5.1 57 94-152 4-61 (231)
73 1xky_A Dihydrodipicolinate syn 20.4 3.6E+02 0.012 24.5 8.5 109 234-354 79-213 (301)
74 4fe3_A Cytosolic 5'-nucleotida 20.4 1E+02 0.0035 27.5 4.7 36 117-152 146-182 (297)
75 1vli_A Spore coat polysacchari 20.2 2.4E+02 0.0081 27.1 7.3 121 82-273 124-245 (385)
76 1rkq_A Hypothetical protein YI 20.0 1.1E+02 0.0039 26.9 4.9 56 94-151 6-62 (282)
No 1
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-60 Score=457.47 Aligned_cols=288 Identities=80% Similarity=1.180 Sum_probs=266.3
Q ss_pred cCCCCChhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHH
Q 018330 68 TDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKR 147 (358)
Q Consensus 68 ~~~~~~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~ 147 (358)
.+...++.++++||+||+|||++|+++++||||||+++++ ++....++++|+.|++.|+++|||||||++++.++++
T Consensus 11 ~~~~~~~~~~~~~~~~a~pyi~~~~~k~iVIKlGGs~l~~---~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~ 87 (298)
T 2rd5_A 11 TGNAPSPDYRVEILSESLPFIQKFRGKTIVVKYGGAAMTS---PELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQ 87 (298)
T ss_dssp -------CHHHHHHHHTHHHHHHTTTCEEEEEECTHHHHC---HHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHHHHhcCCEEEEEECchhhCC---hhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHH
Confidence 3334466899999999999999999999999999999999 7666889999999999999999999999999999999
Q ss_pred cCCCccccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHH
Q 018330 148 FGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTV 227 (358)
Q Consensus 148 ~gi~~~~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~ 227 (358)
++++++|.+|+|+|+++.++.+.++++|++|..++..|+++|++++++++.+++++++++.+..+|++++|+++.++.+.
T Consensus 88 ~~~~~~~~~g~R~t~~~~l~~~~~~~~G~~n~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~~~ 167 (298)
T 2rd5_A 88 LNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSV 167 (298)
T ss_dssp TTCCCCEETTEECBCHHHHHHHHHHHHHTHHHHHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECGGG
T ss_pred cCCCccccCCcccCCHHHHHHHHHHHhchHHHHHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECHHH
Confidence 99999999999999999999999988899999999999999999999999999999998765334788999999999999
Q ss_pred HHHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCC
Q 018330 228 IEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307 (358)
Q Consensus 228 I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~ 307 (358)
|+.+|++|.|||+++++.++.|+.+++|+|++|+++|.+|+||+|+|+|||||||+++|+|.++|++|+++|+++++..+
T Consensus 168 i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~~a~~i~~is~~e~~~~~~~g 247 (298)
T 2rd5_A 168 LRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDG 247 (298)
T ss_dssp HHHHHHTTCEEEEESEEECTTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSCTTSEECEEEHHHHHHHHHTT
T ss_pred HHHHHhCCCEEEEcCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCCCCCCcccCCHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999877678899999999999999888
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 308 ~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+++|||.+|+++|..+++.|+++++|+||+.|++|+.++|+++++||+|.+
T Consensus 248 ~~~gGM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 248 KVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp SSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred CCCCchHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 999999999999999999999999999999999988899999999999975
No 2
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=100.00 E-value=2.1e-59 Score=449.33 Aligned_cols=281 Identities=44% Similarity=0.777 Sum_probs=265.5
Q ss_pred ChhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCc
Q 018330 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEP 152 (358)
Q Consensus 73 ~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~ 152 (358)
++.++++||+||+|||++|+++++||||||+++++ +.....++++|+.|++.|+++|||||||++++.+++++++++
T Consensus 5 ~~~~~~~~~~~a~pyi~~~~~k~iViKlGGs~l~~---~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~ 81 (299)
T 2ap9_A 5 PTHIKAQVLAEALPWLKQLHGKVVVVKYGGNAMTD---DTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEG 81 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCEEEEEECTHHHHS---HHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCC
T ss_pred ChhhHHHHHHHHHHHHHHhCCCeEEEEECchhhCC---chHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCcc
Confidence 56899999999999999999999999999999999 766688999999999999999999999999999999999999
Q ss_pred cccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCC-----CCCCCCcccceeecCHHH
Q 018330 153 VFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSP-----NSDKLGFVGEVARVDPTV 227 (358)
Q Consensus 153 ~~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~-----~~~d~g~~g~v~~i~~~~ 227 (358)
+|.+|+|+|+.++++++.++++|++|..|+++|+++|++++++++.|++++++++.. +..|+|++|+|..++.+.
T Consensus 82 ~~~~g~R~t~~~~l~~~~~~~~G~l~~~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~ 161 (299)
T 2ap9_A 82 DFKGGFRVTTPEVLDVARMVLFGQVGRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAA 161 (299)
T ss_dssp CCSSSSCCBCHHHHHHHHHHHHHTHHHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHH
T ss_pred cccCCcccCCHHHHHHHHHHHhhHHHHHHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHH
Confidence 999999999999999999999999999999999999999999999999999988753 246899999999999999
Q ss_pred HHHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCC
Q 018330 228 IEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307 (358)
Q Consensus 228 I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~ 307 (358)
|+.+|++|.|||++|++.+++|+.+++|+|++|+.+|.+|+||+|+|+|||||||+++|+++++|++|+++|+++++.
T Consensus 162 i~~lL~~g~IpVv~~v~~~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~~~~~i~~is~~e~~~l~~-- 239 (299)
T 2ap9_A 162 MLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDRDSLVSEIDTGTLAQLLP-- 239 (299)
T ss_dssp HHHHHHTTCEEEEESEEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTCTTCEESEEEHHHHHHHGG--
T ss_pred HHHHHhCCCeEEECCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCCCCcChhhcCHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999998766678999999999999976
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 308 ~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.++|||.||+++|..+++.|+++++|+||+.|++|+.++|+++++||+|.+
T Consensus 240 ~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~ 290 (299)
T 2ap9_A 240 TLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVR 290 (299)
T ss_dssp GSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEEC
T ss_pred hhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEec
Confidence 789999999999999999999999999999999988999999999999964
No 3
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=100.00 E-value=7.5e-59 Score=449.58 Aligned_cols=281 Identities=66% Similarity=1.061 Sum_probs=265.8
Q ss_pred hhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcc
Q 018330 74 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153 (358)
Q Consensus 74 ~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~ 153 (358)
..++++||+||+|||++|+++++|||+||+++++ ++....++++|+.|++.|+++|||||||++++..++++|++++
T Consensus 30 ~~~~~~~~~~a~pyi~~~~~k~iVIKlGGs~l~~---~~~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~ 106 (321)
T 2v5h_A 30 AADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQ---EELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQ 106 (321)
T ss_dssp CCCHHHHHHHTHHHHHHTTTCEEEEEECTHHHHS---HHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCC
T ss_pred hhhHHHHHHHHHHHHHHhCCCeEEEEECchhhCC---chHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCcc
Confidence 3589999999999999999999999999999999 7666889999999999999999999999999999999999999
Q ss_pred ccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh
Q 018330 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN 233 (358)
Q Consensus 154 ~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~ 233 (358)
|.+|+|+|++..++.+.++++|++|..++.+|+++|++++++++.+++++.+++.. .+|++++|++..++.+.|+.+|+
T Consensus 107 ~~~g~Rvt~~~~l~~~~~~~~G~in~~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~-~~d~g~~g~v~~v~~~~i~~lL~ 185 (321)
T 2v5h_A 107 FHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHD-QEGIGFVGEVNSVNSEVIEPLLE 185 (321)
T ss_dssp BSSSSBCBCHHHHHHHHHHHHHTHHHHHHHHHHHHTCCEEEECTTGGGSEEEEECS-SCSSBSBEEEEEECGGGTHHHHH
T ss_pred ccCCcccCCHHHHHHHHHHHhChHHHHHHHHHHhCCCCeeeeChhhccEEEeecCC-CccccccceeEEecHHHHHHHHH
Confidence 99999999999999999988899999999999999999999999999999998765 46899999999999999999999
Q ss_pred CCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCc
Q 018330 234 SGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGM 313 (358)
Q Consensus 234 ~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM 313 (358)
+|.|||+++++.++.|+.+++|+|++|+.+|.+|+||+|+|+|||||||+++|++.++|++|+++|+++++..+.++|||
T Consensus 186 ~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~~a~~i~~is~~e~~~l~~~g~~~gGM 265 (321)
T 2v5h_A 186 RGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGM 265 (321)
T ss_dssp TTCEEEEESEEECTTSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTCTTCBCCEEEHHHHHHHHHTTSSCTTH
T ss_pred CCCeEEEeCceECCCCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCCCCeeeeEEcHHHHHHHHhCCCCcCcH
Confidence 99999999999999999999999999999999999999999999999999866667899999999999999888899999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 314 IPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 314 ~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+|+++|..+++.|+++++|+||+.|++|+.++|++++.||+|.+
T Consensus 266 ~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~ 310 (321)
T 2v5h_A 266 IPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVG 310 (321)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEEC
Confidence 999999999999999999999999999998999999999999963
No 4
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=100.00 E-value=1.3e-57 Score=437.19 Aligned_cols=279 Identities=48% Similarity=0.822 Sum_probs=262.4
Q ss_pred hhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcc
Q 018330 74 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153 (358)
Q Consensus 74 ~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~ 153 (358)
+.++++||+||+|||++|+++++|||+||+++++ +.....++++|+.|++.|+++|||||||++++..+++++++++
T Consensus 7 ~~~~~~~~~~a~pyi~~~~~k~iVIKlGGs~l~~---~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~ 83 (300)
T 2buf_A 7 AAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMES---EELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESH 83 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTS---SHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHhHHHHHhcCCeEEEEECchhhCC---chHHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCcc
Confidence 4589999999999999999999999999999999 6656789999999999999999999999999999999999999
Q ss_pred ccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCC-----------CCCCCcccceee
Q 018330 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPN-----------SDKLGFVGEVAR 222 (358)
Q Consensus 154 ~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~-----------~~d~g~~g~v~~ 222 (358)
|.+|+|+|++++++.+.++++|++|..|+++|+++|++++++++.|++++.+++... ..|++++|+|+.
T Consensus 84 ~~~g~rvt~~~~l~~~~~~~~G~~~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~ 163 (300)
T 2buf_A 84 FIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTG 163 (300)
T ss_dssp BSSSSBCBCHHHHHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEE
T ss_pred ccCCeecCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEE
Confidence 999999999999999999988999999999999999999999999999999886431 127899999999
Q ss_pred cCHHHHHHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHH
Q 018330 223 VDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKK 302 (358)
Q Consensus 223 i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~ 302 (358)
++.+.|+.+|++|.|||+++++.++.|+.+++|+|++|+++|.+|+||+|+|+|||||||++ +.++|++++++|+++
T Consensus 164 v~~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~---~a~~i~~i~~~e~~~ 240 (300)
T 2buf_A 164 VNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDK---QGQVLTGLSTEQVNE 240 (300)
T ss_dssp ECHHHHHHHHHTTCEEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCT---TSCBCCEECHHHHHH
T ss_pred ECHHHHHHHHHCCCEEEEcCceeCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECC---CCcChhhCCHHHHHH
Confidence 99999999999999999999998999999999999999999999999999999999999986 478999999999999
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 303 MIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 303 l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
++..+.++|||.+|+++|..+++.|+++++|+||+.|++|+.++|++++.||+|.+
T Consensus 241 ~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~ 296 (300)
T 2buf_A 241 LIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISN 296 (300)
T ss_dssp HHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEEC
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEe
Confidence 99888899999999999999999999999999999999988999999999999963
No 5
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=100.00 E-value=1e-57 Score=434.14 Aligned_cols=277 Identities=48% Similarity=0.837 Sum_probs=261.2
Q ss_pred hhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccc
Q 018330 75 EFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVF 154 (358)
Q Consensus 75 ~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~ 154 (358)
.++++|||||+|||++|+++++||||||+++++ ++....++++|+.|++.|+++|||||||++++.++++++++++|
T Consensus 3 ~~~~~~~~~~~pyi~~~~~~~iViKlGGs~l~~---~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~~~~~~ 79 (282)
T 2bty_A 3 IDTVNVLLEALPYIKEFYGKTFVIKFGGSAMKQ---ENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVF 79 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEECSHHHHS---HHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCB
T ss_pred hHHHHHHHHHHHHHHHhcCCeEEEEECchhhCC---hhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCCccc
Confidence 468999999999999999999999999999998 76668899999999999999999999999999999999999999
Q ss_pred cCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhC
Q 018330 155 RDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNS 234 (358)
Q Consensus 155 ~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~ 234 (358)
.+|+|+|+++.++.+.++++|++|..++++|+++|++++++++.+++++.+++.....|++++|+++.++.+.|+.+|++
T Consensus 80 ~~g~r~t~~~~l~~~~~~~~G~~~~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~~~i~~ll~~ 159 (282)
T 2bty_A 80 KNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIEN 159 (282)
T ss_dssp SSSSBCBCHHHHHHHHHHHHHTHHHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHT
T ss_pred cCCcccCCHHHHHHHHHHHhhHHHHHHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecHHHHHHHHHC
Confidence 99999999999999999988999999999999999999999999999999887532347899999999999999999999
Q ss_pred CCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcH
Q 018330 235 GHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMI 314 (358)
Q Consensus 235 G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~ 314 (358)
|.|||++|++.++.|+.+++|+|++|+.+|.+|+||+|+|+|||||||++ | ++|++++++|+++++..+.++|||.
T Consensus 160 g~IpVi~~v~~~~~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~---~-~~i~~i~~~e~~~~~~~g~~~gGM~ 235 (282)
T 2bty_A 160 DYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD---G-KLISTLTPDEAEELIRDGTVTGGMI 235 (282)
T ss_dssp TCEEEEESEEECSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET---T-EECCEECHHHHHHHHTTTCSCTTHH
T ss_pred CCEEEECCCccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC---c-hhhhhCCHHHHHHHHHcCCCCCcHH
Confidence 99999999999999999999999999999999999999999999999997 5 9999999999999988888999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 315 PKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 315 ~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+|+++|..+++.|+++++|+||+.|++|+.++|++++.||+|.+
T Consensus 236 ~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~ 279 (282)
T 2bty_A 236 PKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKE 279 (282)
T ss_dssp HHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECC
T ss_pred HHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEe
Confidence 99999999999999989999999999988899999999999964
No 6
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=100.00 E-value=1.5e-54 Score=415.75 Aligned_cols=262 Identities=32% Similarity=0.504 Sum_probs=237.6
Q ss_pred HHhhhHHHHhhcC----CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccC
Q 018330 81 LSESLPFIQKFRG----KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD 156 (358)
Q Consensus 81 l~~a~pyi~~~~~----k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~ 156 (358)
+||++||+++|++ +++|||+||+++++ . .++++++|++|+..|.++|||||||++++.+++++|++++|.+
T Consensus 32 ~re~~~yi~~f~~~~~~~~iViK~GGsv~~~---~--~~~~~~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~~~~ 106 (307)
T 3zzh_A 32 KREVEQYLKYFTSVSQQQFAVIKVGGAIISD---N--LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYID 106 (307)
T ss_dssp HHHHHHHHHHHHCCCCSCCEEEEECHHHHHH---S--HHHHHHHHHHHHHBTCCEEEEECCHHHHHHHHHHTTCCCCEET
T ss_pred hhhHHHHHHHHhCCCCCCEEEEEEChHHhhc---h--HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHcCCCccccC
Confidence 4789999999999 99999999998876 2 4789999999999999999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCC
Q 018330 157 GLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGH 236 (358)
Q Consensus 157 g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~ 236 (358)
|+|+|++++|+++.|++ +++|+.++++|+++|++++++++ +++++++.. +.||||+|+|++++.+.|+.+|++|+
T Consensus 107 G~RvTd~~~l~vv~m~~-~~vn~~lv~~L~~~G~~Av~l~g---g~~~a~~~~-~~d~g~~G~i~~v~~~~i~~lL~~g~ 181 (307)
T 3zzh_A 107 GIRITDEHTMAVVRKCF-LEQNLKLVTALEQLGVRARPITS---GVFTADYLD-KDKYKLVGNIKSVTKEPIEASIKAGA 181 (307)
T ss_dssp TEECBCHHHHHHHHHHH-HHHHHHHHHHHHHTTCCEEEECS---SSEEEEESC-HHHHBSBEEEEEECCHHHHHHHHHTC
T ss_pred CeecCCHHHHHHHHHHH-HHHHHHHHHHHHhCCCCeeEEcC---CcEEEEecC-ccccCccccccccCHHHHHHHHHCCC
Confidence 99999999999999995 68999999999999999999986 566888743 56899999999999999999999999
Q ss_pred eEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHH-HHHHHhCCCCCCCcHH
Q 018330 237 IPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKG-VKKMIEDGKVGGGMIP 315 (358)
Q Consensus 237 IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e-~~~l~~~~~vtGGM~~ 315 (358)
|||++|++++.+|+++|+|+|++|+++|.+|+||+|+|+|||||||++ +++++|+++++.| +++++.+++++|||.|
T Consensus 182 IpVi~~~g~~~~G~~~~i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~--~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~ 259 (307)
T 3zzh_A 182 LPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING--STGEKISMINLDEEYDDLMKQSWVKYGTKL 259 (307)
T ss_dssp EEEECCCEECTTCBEEBCCHHHHHHHHHHHHCCSEEEEECSSCSCEET--TTTEECCEEEHHHHHHHHHTSTTSCHHHHH
T ss_pred EEEEeCCeECCCCcEEecCHHHHHHHHHHhCCCCEEEEEeCCcceecC--CCCcCCcccCHHHHHHHHHhCCCCCCcHHH
Confidence 999999998888999999999999999999999999999999999986 2357999999975 7888888889999999
Q ss_pred HHHH---HHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 316 KVNC---CIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 316 Kv~a---A~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
||++ |.++++.|.. ++|++ +++|+.|+|+++++||+|.+
T Consensus 260 Kl~aa~~a~~~v~~g~~-v~I~~---~~~ll~elft~~g~GT~I~~ 301 (307)
T 3zzh_A 260 KIREIKELLDYLPRSSS-VAIIN---VQDLQKELFTDSGAGTMIRR 301 (307)
T ss_dssp HHHHHHHHHHHSCTTCC-EEEEC---GGGHHHHHHSCCCCSEEEEC
T ss_pred HHHHHHHHHHHhccCeE-EEEeC---ccHHHHHHhcCCCCcEEEec
Confidence 9985 4444445755 99998 88988999999999999964
No 7
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=100.00 E-value=2.8e-53 Score=428.28 Aligned_cols=273 Identities=25% Similarity=0.417 Sum_probs=251.5
Q ss_pred hhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccc
Q 018330 75 EFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVF 154 (358)
Q Consensus 75 ~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~ 154 (358)
.+++++|+||+|||++|+++++|||+||+++++ ++ +..++++|+.|++.|+++|||||||++++..+++++++++|
T Consensus 25 ~~~~~~~~~~~~yi~~~~~~~iViK~GG~~l~~---~~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~~~~~~~ 100 (456)
T 3d2m_A 25 DSFVAHFREAAPYIRQMRGTTLVAGIDGRLLEG---GT-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHY 100 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEEECGGGGTS---TH-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTTTCCCCC
T ss_pred hHHHHHHHHhHHHHHHhcCCEEEEEEChHHhcC---ch-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHCCCCCEe
Confidence 678999999999999999999999999999998 55 47899999999999999999999999999999999999999
Q ss_pred cCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCee----EeecCCCccEEEeecCC--CCCCCCcccceeecCHHHH
Q 018330 155 RDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATA----VGLSGMDGRLFTARPSP--NSDKLGFVGEVARVDPTVI 228 (358)
Q Consensus 155 ~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~a----v~lsg~d~~ll~a~~~~--~~~d~g~~g~v~~i~~~~I 228 (358)
.+|+|+|+++.++.+.++. |++|..++++|+ +|+++ +++++.|++++++++.+ +++|++++|+|+.++.+.|
T Consensus 101 ~~g~r~t~~~~l~~~~~~~-G~~~~~l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i 178 (456)
T 3d2m_A 101 CRGLRVTDETSLGQAQQFA-GTVRSRFEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAAL 178 (456)
T ss_dssp GGGCCCBCHHHHHHHHHHH-HHHHHHHHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECHHHH
T ss_pred eCCeecCCHHHHHHHHHHH-hHHHHHHHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECHHHH
Confidence 9999999999999998885 999999999998 99998 99999999999998864 2357899999999999999
Q ss_pred HHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCC
Q 018330 229 EPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGK 308 (358)
Q Consensus 229 ~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~ 308 (358)
+.+|++|.|||++|++.+.+|+++|+|+|++|+.+|.+|+||+|+|+|||||||++ +.++|++|+++|+.+++..+.
T Consensus 179 ~~lL~~g~ipIi~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~---~~~~i~~i~~~e~~~~~~~g~ 255 (456)
T 3d2m_A 179 RFQLDAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRP---DGTLAETLSAQEAQSLAEHAA 255 (456)
T ss_dssp HHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCT---TSCBCSEEEHHHHHHHHTTCC
T ss_pred HHHHHCCCeEEECCcccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCC---CCCccccCCHHHHHHHHhccC
Confidence 99999999999999998999999999999999999999999999999999999986 368999999999999987653
Q ss_pred CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 309 VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 309 vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
|||.||+++|..+++.|+++++|+||+.|++|+.++|++++.||+|.+
T Consensus 256 --ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~ 303 (456)
T 3d2m_A 256 --SETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAK 303 (456)
T ss_dssp --HHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEEC
T ss_pred --CChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeec
Confidence 999999999999999999999999999999998999999999999963
No 8
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=100.00 E-value=3.1e-53 Score=426.42 Aligned_cols=265 Identities=31% Similarity=0.478 Sum_probs=244.7
Q ss_pred HHHhhhHHHHhhcC----CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcccc
Q 018330 80 ILSESLPFIQKFRG----KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFR 155 (358)
Q Consensus 80 ~l~~a~pyi~~~~~----k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~ 155 (358)
.+||++|||++|++ +++|||+||+++++ + +++++++|+.|+..|.++|||||||++++.+++++|++++|+
T Consensus 41 ~~re~~pyi~~f~~~~~~~~iViK~GGsv~~~---~--l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~ 115 (460)
T 3s6g_A 41 DGKEIREYLHRFSGIDQERFAVIKVGGAVIQD---D--LPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAADIPTERV 115 (460)
T ss_dssp THHHHHHHHHHTSSSCGGGSEEEEECHHHHHH---C--HHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHHSCCCCCC
T ss_pred CHHHHHHHHHHHhCCCCCCEEEEEEChHHhhh---H--HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCcccc
Confidence 45799999999998 89999999997775 2 388999999999999999999999999999999999999999
Q ss_pred CCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCC
Q 018330 156 DGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSG 235 (358)
Q Consensus 156 ~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G 235 (358)
+|+|+|++++|+++.|++ +++|..++++|+++|+++++++| +.+++++.. +.|||++|+|++++.+.|+.+|++|
T Consensus 116 ~G~RvTd~~~l~vv~~~l-g~vn~~lv~aL~~~G~~Av~lsg---~~~~a~~~~-~~d~g~~G~I~~v~~~~i~~lL~~g 190 (460)
T 3s6g_A 116 DGLRVTRDEAMPIIRDTL-TQANLALVDAIRDAGGRAAAVPR---GVFEADIVD-ADKLGRVGEPRHIHLDLVGSAARAG 190 (460)
T ss_dssp SSSCCBCTTTHHHHHHHH-HHHHHHHHHHHHHTTCCEEEECS---SSEEEEESC-TTTTBSEEEEEEECCHHHHHHHHTT
T ss_pred CCccCCCHHHHHHHHHHH-HHHHHHHHHHHHhCCCCceEEec---CeEEEEEec-CcccCccCcceEEcHHHHHHHHHCC
Confidence 999999999999999997 69999999999999999999996 444777654 5789999999999999999999999
Q ss_pred CeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHH-HHHHHHhCCCCCCCcH
Q 018330 236 HIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIK-GVKKMIEDGKVGGGMI 314 (358)
Q Consensus 236 ~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~-e~~~l~~~~~vtGGM~ 314 (358)
.|||++|++.+.+|+++|+|+|++|+.+|.+|+||+|+|+|||+|||++ .+++|++|+.. |++.++..++++|||.
T Consensus 191 ~IpVi~p~g~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~---~~~lI~~i~~~~e~~~l~~~~~~tGGM~ 267 (460)
T 3s6g_A 191 QAAILACLGETPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDE---DGDILSSINLATDFGDLMQADWVNGGMR 267 (460)
T ss_dssp CEEEEECEEECTTCCEEEECHHHHHHHHHHHHCCSEEEEECSSCSCBCT---TSSBCCEEEHHHHHHHHHHCSSSCHHHH
T ss_pred cEEEEECceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCCccccCC---CCeecceeCcHHHHHHHHhcCCCCCcHH
Confidence 9999999988889999999999999999999999999999999999985 36899999995 8999988888999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 315 PKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 315 ~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+||++|..+++ |+++++|++|+.|++|+.+||+++++||+|.+
T Consensus 268 ~Kl~aa~~a~~-gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~ 310 (460)
T 3s6g_A 268 LKLEEIKRLLD-DLPLSSSVSITRPSELARELFTHAGSGTLIRR 310 (460)
T ss_dssp HHHHHHHHHHH-TSCTTCEEEEECGGGHHHHHHSSCCSSEEEEC
T ss_pred HHHHHHHHHHh-CCCcEEEEEeCCCcHHHHHHhcCCCCceEEEc
Confidence 99999998887 66669999999999999999999999999964
No 9
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=100.00 E-value=1e-52 Score=421.99 Aligned_cols=265 Identities=31% Similarity=0.500 Sum_probs=226.5
Q ss_pred HHHHHhhhHHHHhhcC----CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcc
Q 018330 78 VDILSESLPFIQKFRG----KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153 (358)
Q Consensus 78 ~~~l~~a~pyi~~~~~----k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~ 153 (358)
+...||++||+++|++ +++|||+||+++++ . .++++++|++|+..|.++|||||||++++.+++++|++++
T Consensus 29 ~~~~re~~~yl~~F~~~~~~~~iVIK~GGsv~~~---~--l~~la~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~ 103 (464)
T 4ab7_A 29 ISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISD---N--LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPD 103 (464)
T ss_dssp --------------------CCEEEEECHHHHHH---C--HHHHHHHHHHHHHTTCCCEEEECCCHHHHHHHHHTTCCCC
T ss_pred cCChhhHHHHHHHHhCCCCCceEEEEECHHHhhc---h--HHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCcc
Confidence 3456899999999998 89999999999876 2 3789999999999999999999999999999999999999
Q ss_pred ccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh
Q 018330 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN 233 (358)
Q Consensus 154 ~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~ 233 (358)
|++|+|+|++++|++++|++ +++|+.++++|+++|+++++++| +++++++.. ++|||++|+|++++.+.|+.+|+
T Consensus 104 f~~G~RvTd~~tl~vv~mv~-~~vn~~lv~~L~~~G~~Avglsg---g~~~a~~~~-~~d~g~vG~I~~v~~~~I~~lL~ 178 (464)
T 4ab7_A 104 YIDGIRITDEHTMAVVRKCF-LEQNLKLVTALEQLGVRARPITS---GVFTADYLD-KDKYKLVGNIKSVTKEPIEASIK 178 (464)
T ss_dssp EETTEECBCHHHHHHHHHHH-HHHHHHHHHHHHHTTCCEEEECS---SSEEEEESC-TTTTBSBEEEEEECCHHHHHHHH
T ss_pred ccCCeecCCHHHHHHHHHHH-HHHHHHHHHHHHhCCCCeEEECC---CcEEEEecC-ccccCCcCcccccCHHHHHHHHH
Confidence 99999999999999999996 68999999999999999999985 567888753 67999999999999999999999
Q ss_pred CCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHH-HHHHHhCCCCCCC
Q 018330 234 SGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKG-VKKMIEDGKVGGG 312 (358)
Q Consensus 234 ~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e-~~~l~~~~~vtGG 312 (358)
+|.|||++|++.+.+|+++|+|+|++|+.+|.+|+|++|+|+|||+|||++ +++++|++|+.+| +++++.++.++||
T Consensus 179 ~G~IPVi~~~g~~~~G~~~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~--~~~~lI~~it~~e~~~~li~~~~~tgG 256 (464)
T 4ab7_A 179 AGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING--STGEKISMINLDEEYDDLMKQSWVKYG 256 (464)
T ss_dssp TTCEEEEESEEECTTCBEEECCHHHHHHHHHHHHCCSEEEEEESSCSEECT--TTCCEECEEEHHHHHHHHHTCSSCCHH
T ss_pred CCcEEEEcCCcCCCCCCEEEecHHHHHHHHHHHcCCCEEEEEecccccccC--CCCcCCcccCHHHHHHHHHhcCCCCCc
Confidence 999999999998889999999999999999999999999999999999986 3468999999975 7888888889999
Q ss_pred cHHHHHHHHHHHH---cCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 313 MIPKVNCCIRSLA---QGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 313 M~~Kv~aA~~al~---~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
|.|||+++..+++ .| ..++|++ +++|+.|+|+++++||+|.+
T Consensus 257 M~pKl~aa~aa~~~v~~g-~~v~I~~---~~~ll~eLft~~g~GT~I~~ 301 (464)
T 4ab7_A 257 TKLKIREIKELLDYLPRS-SSVAIIN---VQDLQKELFTDSGAGTMIRR 301 (464)
T ss_dssp HHHHHHHHHHHHTTSCTT-CEEEEEE---STTHHHHTTSSSTTSEEEEC
T ss_pred HHHHHHHHHHHHHhcccC-cEEEEec---ChHHHHHHhcCCCCceEEec
Confidence 9999995544443 36 5699998 78888999999999999964
No 10
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=100.00 E-value=8.9e-52 Score=392.02 Aligned_cols=234 Identities=33% Similarity=0.489 Sum_probs=223.1
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVL 173 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl 173 (358)
|++||||||+++++ . ..+++++|+.|+..|+++|||||||++++..++++|++++|.+|+|+|++++++++++++
T Consensus 37 k~iVIKiGGs~l~~---~--~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg~~~~~~~G~Rvtd~~~l~~v~~~l 111 (279)
T 3l86_A 37 DIIVIKIGGVASQQ---L--SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQVPVKKINGLRVTSKDDMVLVSHAL 111 (279)
T ss_dssp CEEEEEECTTGGGS---C--CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHHHHHHHH
T ss_pred ceEEEEEChHHHHh---H--HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcCCCCccCCCcccCcHHHHHHHHHHH
Confidence 79999999999987 2 468999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCccc
Q 018330 174 VGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYN 253 (358)
Q Consensus 174 ~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~ 253 (358)
+|++|+.|+++|+++|+++++++|.|+++++++++ ++.||+++|+|++++.+.|+.+|++|+|||++|++++++|+.+|
T Consensus 112 ~G~ln~~i~~~L~~~G~~a~~l~g~dg~llta~~~-~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi~~v~~~~~G~~~~ 190 (279)
T 3l86_A 112 LDLVGKNLQEKLRQAGVSCQQLKSDIKHVVAADYL-DKDTYGYVGDVTHINKRVIEEFLENRQIPILASLGYSKEGDMLN 190 (279)
T ss_dssp HHTTHHHHHHHHHHTTCCEEECSGGGGGTEEEEES-CHHHHBSBEEEEEECHHHHHHHHHTTCEEEEESEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCcCCEEEeecc-CccccCcccccchhhHHHHHHHHhCCcEEEECCcEECCCCCEee
Confidence 99999999999999999999999999999999987 46689999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEE
Q 018330 254 INADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASI 333 (358)
Q Consensus 254 i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~I 333 (358)
+|+|++|+++|.+|+||+|+|+|||||||++ +++|++++++|+++++..++++|||.+|+++|..+++.|++++||
T Consensus 191 i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~d----~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~Gv~~v~I 266 (279)
T 3l86_A 191 INADYLATAVAVALAADKLILMTNVKGVLEN----GAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLI 266 (279)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEECSSSSCEET----TEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEE
T ss_pred cCHHHHHHHHHHHcCCCEEEEEeCCCccccC----CEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999953 689999999999999988889999999999999999999999999
Q ss_pred EeCC
Q 018330 334 IDGR 337 (358)
Q Consensus 334 i~G~ 337 (358)
+|+.
T Consensus 267 ~~~~ 270 (279)
T 3l86_A 267 GDNL 270 (279)
T ss_dssp ESSS
T ss_pred eccC
Confidence 9964
No 11
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.4e-52 Score=419.21 Aligned_cols=263 Identities=33% Similarity=0.518 Sum_probs=241.9
Q ss_pred HhhhHHHHhhcC----CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCC
Q 018330 82 SESLPFIQKFRG----KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDG 157 (358)
Q Consensus 82 ~~a~pyi~~~~~----k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g 157 (358)
||++|||++|++ +++|||+||+++++ + +++++++|+.|+..|.++|||||||++++.+++++|++++|++|
T Consensus 46 re~~pyi~~f~~~~~~~~iViK~GG~v~~~---~--l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~~~gi~~~f~~G 120 (467)
T 3s6k_A 46 KEISQYLKRFSQLDAKRFAVVKVGGAVLRD---D--LEALTSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEKQTVNG 120 (467)
T ss_dssp HHHHHHHHSSSSSCSTTSCCCCCCHHHHTT---C--CHHHHHHHHHHHTTSCCCCCCCCCCHHHHHHHHTTSCCCCCCSS
T ss_pred HHHHHHHHHHhCCCCCcEEEEEEChHHhhh---H--HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCC
Confidence 599999999998 89999999997776 2 37899999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCe
Q 018330 158 LRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHI 237 (358)
Q Consensus 158 ~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~I 237 (358)
+|+|++++|+++.|++ +++|..|+++|+++|+++++++| +.+++++.. +.|||++|+|+.++.+.|+.+|++|.|
T Consensus 121 ~RvTd~~~l~vv~~~~-g~vn~~Lv~aL~~~G~~Av~lsg---~~~~a~~~~-~~d~g~~G~I~~v~~~~i~~lL~~g~I 195 (467)
T 3s6k_A 121 LRVTSPHALAIVRKVF-QASNLKLVEALQQNGARATSITG---GVFEAEYLN-RDTYGLVGEVKAVNLAPIEASLQAGSI 195 (467)
T ss_dssp SCCBCHHHHHHHHHHH-HHHHHHHHHHHHHHTCCBCCCCS---SSBCCCBSC-SSSSBSBBCCCCBCCHHHHTHHHHTCB
T ss_pred ccCCCHHHHHHHHHHH-HHHHHHHHHHHHhCCCCceEEcC---ccEEEEecc-CcccCccceEEEEcHHHHHHHHHCCCE
Confidence 9999999999999996 69999999999999999999986 334666543 578999999999999999999999999
Q ss_pred EEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHH-HHHHHHhCCCCCCCcHHH
Q 018330 238 PVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIK-GVKKMIEDGKVGGGMIPK 316 (358)
Q Consensus 238 PVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~-e~~~l~~~~~vtGGM~~K 316 (358)
||++|++.+.+|+++|+|+|++|+.+|.+|+||+|+|+|||+|||++ .+++|++++.. |++.++..++++|||.+|
T Consensus 196 pVi~pvg~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~---~~~lI~~i~~~~e~~~l~~~~~~tGGM~~K 272 (467)
T 3s6k_A 196 PVITSLGETPSGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDA---EGKLIDSINLSTEYDHLMQQPWINGGMRVK 272 (467)
T ss_dssp CCCCSCCCCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCSSCSCCCS---SCCCCCCCCTTTTTHHHHTSSSCCSHHHHH
T ss_pred EEEECceECCCCcEEecCHHHHHHHHHHhcCCCEEEEEecccceeCC---CCCCccccChHHHHHHHHhcCCCCCchHHH
Confidence 99999988889999999999999999999999999999999999985 36899999985 889998888899999999
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 317 v~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
|++|..+++ |+++++|++|+.|++|+.+||+++++||+|.+
T Consensus 273 l~aa~~a~~-gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~ 313 (467)
T 3s6k_A 273 IEQIKDLLD-RLPLESSVSITRPADLAKELFTHKGSGTLVRR 313 (467)
T ss_dssp HHHHHHHHT-TSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCC
T ss_pred HHHHHHHHh-CCCcEEEEEeCCchHHHHHHhcCCCcceEEeC
Confidence 999988876 66669999999999999999999999999864
No 12
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=100.00 E-value=9.4e-49 Score=370.12 Aligned_cols=251 Identities=36% Similarity=0.553 Sum_probs=218.7
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCC---ccccCCc--ccCCHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIE---PVFRDGL--RVTDANTMEIV 169 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~---~~~~~g~--rvt~~~~~~~v 169 (358)
++||||||++++. +..++++|+.|++.|+++|||||||++++.++++++++ ++|.+|+ |+|+.+.|+++
T Consensus 1 ~iViKlGGs~l~~------~~~~~~~i~~l~~~G~~vViVhGgg~~~~~~~~~~~~~~~~~~~~~g~~~rvt~~~~l~~~ 74 (269)
T 2egx_A 1 MIVVKVGGAEGIN------YEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKTLEIF 74 (269)
T ss_dssp CEEEEECCSTTCC------HHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHHTTCCCCC-------CCCCCCHHHHHHH
T ss_pred CEEEEECHHHHHH------HHHHHHHHHHHHHCCCeEEEEECChHHHHHHHHHcCCccccccccCCccCcCCCHHHHHHH
Confidence 5899999999973 47899999999889999999999999999999999998 6788999 99999999999
Q ss_pred HHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCC----------CCCCCCcccceeecCHHHHHHHHhCCCeEE
Q 018330 170 SMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSP----------NSDKLGFVGEVARVDPTVIEPLVNSGHIPV 239 (358)
Q Consensus 170 ~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~----------~~~d~g~~g~v~~i~~~~I~~lL~~G~IPV 239 (358)
.++++|++|..|+++|+++|+++.++++.|++++++++.+ .++|++|+|++++++.+.|+.+|++|.|||
T Consensus 75 ~~~~~G~i~~~l~~~l~~~G~~a~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~~ll~~g~ipV 154 (269)
T 2egx_A 75 EMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQAGYLPV 154 (269)
T ss_dssp HHHHHTHHHHHHHHHHHHTTCCEEEEETTGGGCEEECBC----------------CCEECCCEECHHHHHHHHHTTCEEE
T ss_pred HHHHHhHHHHHHHHHHHHCCCCeEEeCCCCccceeeeecccccccccccccCCcCCCCCCceEECHHHHHHHHHCCCEEE
Confidence 9999999999999999999999999999999999998753 235789999999999999999999999999
Q ss_pred EcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccccc-CcccccccHHHHH--HHHhCCCCCCCcHHH
Q 018330 240 IASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDP-MSLVKEIDIKGVK--KMIEDGKVGGGMIPK 316 (358)
Q Consensus 240 i~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp-~~lI~~I~~~e~~--~l~~~~~vtGGM~~K 316 (358)
+++++.+++|+++++|+|++|+++|.+|+||+|+|+|||||||++| .| .++|++++++|++ ++ .++++|||.+|
T Consensus 155 i~~v~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~dp-~~~a~~i~~i~~~e~~~~~l--~~~~~ggm~~K 231 (269)
T 2egx_A 155 LTPPALSYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLARY-PDEASLVREIPVERIEDPEY--LALAQGRMKRK 231 (269)
T ss_dssp EECCEEETTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSCBC-------CBCCEECHHHHHCHHH--HTTSCHHHHHH
T ss_pred EcCcEECCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCchhhhcCC-CCCccccccCCHHHhhHHHh--cCCCCCchHHH
Confidence 9999888999999999999999999999999999999999999954 44 4799999999999 88 46789999999
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 317 v~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+++|..+++.|+++++|+||+.|++|+.++ . |.||+|.
T Consensus 232 l~aa~~a~~~gv~~v~I~~g~~~~~l~~~l-~--g~GT~i~ 269 (269)
T 2egx_A 232 VMGAVEAVKGGVKRVVFADGRVENPIRRAL-S--GEGTVVR 269 (269)
T ss_dssp HHHHHHHHHTTCSCEEEEESSSSSHHHHHH-T--TCSEEEC
T ss_pred HHHHHHHHHcCCCeEEEEeCCCchHHHHHh-C--CCCeEEC
Confidence 999999999999669999999999987655 4 4999984
No 13
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=100.00 E-value=1.3e-47 Score=360.07 Aligned_cols=254 Identities=32% Similarity=0.491 Sum_probs=235.0
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCC-eEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGL-RPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMV 172 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~-~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~v 172 (358)
+++||||||+++++ ++.+.+++++|+.+...|. ++|||||||++++.++++++++..+.+|+|+|+.++++.++++
T Consensus 3 ~~~ViK~GGs~l~~---~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~~~~~glr~t~~~~l~~~~~~ 79 (258)
T 1gs5_A 3 NPLIIKLGGVLLDS---EEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGA 79 (258)
T ss_dssp CCEEEEECGGGGGC---HHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCEETTEECBCHHHHHHHHHH
T ss_pred ccEEEEEChhHhCC---hHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCcceeCCEeeCCHHHHHHHHHH
Confidence 57999999999999 7767899999998876655 5899999999999999999999889999999999999999999
Q ss_pred HhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCcc
Q 018330 173 LVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSY 252 (358)
Q Consensus 173 l~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~ 252 (358)
+.+++|+.+++.|+++|++++++++.+++++++++.. .|++++|+++.++.+.|+.+|++|.|||++|++.+.+|+++
T Consensus 80 l~~~~n~~l~~~l~~~G~~a~~l~~~~~~~~~~~~~~--~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g~~~~g~~~ 157 (258)
T 1gs5_A 80 LAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLD--EELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLM 157 (258)
T ss_dssp HHTHHHHHHHHHHHHTTCCEEEECTTGGGCEEEEECC--GGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTTSCEE
T ss_pred HhccchHHHHHHHHHCCCCeEEEeecCCCEEEEEEcC--CCCCCcCceeEECHHHHHHHHHCCCEEEEeCCcCCCCCcEE
Confidence 9999999999999999999999999999999999864 57889999999999999999999999999999888999999
Q ss_pred ccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEE
Q 018330 253 NINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTAS 332 (358)
Q Consensus 253 ~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~ 332 (358)
|+|+|++|+.+|.+|+|| |+|+|||||||+++ +++|++++++|+++++..+.++|||.+|+++|.++++.+..+++
T Consensus 158 ~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d---~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~~~v~ 233 (258)
T 1gs5_A 158 NVNADQAATALAATLGAD-LILLSDVSGILDGK---GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVD 233 (258)
T ss_dssp ECCHHHHHHHHHHHHTCE-EEEEESSSSCBCTT---SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEE
T ss_pred EecHHHHHHHHHHHhCCc-EEEEeCCCceECCC---CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999999 99999999999862 58999999999999998889999999999999999876434599
Q ss_pred EEeCCCcchHHHHHHcCCCCceEEc
Q 018330 333 IIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 333 Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
|+||+.|+.| .++|+++++||+|.
T Consensus 234 I~~~~~~~~l-~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 234 IASWRHAEQL-PALFNGMPMGTRIL 257 (258)
T ss_dssp EEESSCGGGH-HHHHTTCCSSEEEC
T ss_pred EecCCCchHH-HHHhcCCCCcEEEe
Confidence 9999999985 78999999999996
No 14
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2.5e-47 Score=360.47 Aligned_cols=240 Identities=22% Similarity=0.315 Sum_probs=196.9
Q ss_pred CCeEEEEECCcccCCCCh------hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcccc---------CC
Q 018330 93 GKTIVVKYGGAAMKPNQK------DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFR---------DG 157 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~------~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~---------~g 157 (358)
||++||||||++|++++. +..+.+++++|+.++ +.++|||||||++++.+++++|++++|. .|
T Consensus 2 ~k~iVIKlGG~~l~~~~~~~~~~~~~~l~~l~~~i~~l~--~~~~vlVhGGG~~~~~~~~~~gi~~~~~~~~g~~~~~~G 79 (269)
T 3ll9_A 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNAS--PSSLMIVHGAGSFGHPFAGEYRIGSEIENEEDLRRRRFG 79 (269)
T ss_dssp -CCEEEEECHHHHEECCSSSCEECHHHHHHHHHHHHHHC--CSSEEEEECCGGGTHHHHHHHTTTSCCCSHHHHHHHHHH
T ss_pred CCEEEEEEChhheecCccccccccHHHHHHHHHHHHHhc--CCCEEEEECCcHHHHHHHHHcCCCcccccCcccccccch
Confidence 689999999999998652 123467888888775 6899999999999999999999999886 67
Q ss_pred cccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCe
Q 018330 158 LRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHI 237 (358)
Q Consensus 158 ~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~I 237 (358)
+|+|+.++ .++|+.++++|+++|++++++++.+..++. +|+++.++.+.|+.+|++|+|
T Consensus 80 ~rvT~~~~---------~~ln~~l~~~L~~~G~~a~~l~g~~~~~~~------------~g~v~~v~~~~i~~lL~~g~i 138 (269)
T 3ll9_A 80 FALTQNWV---------KKLNSHVCDALLAEGIPAVSMQPSAFIRAH------------AGRISHADISLIRSYLEEGMV 138 (269)
T ss_dssp HHHHHHHH---------HHHHHHHHHHHHHTTCCEEECCGGGTEEEE------------TTEEEEECCHHHHHHHHTTCE
T ss_pred hhHHHHHH---------HHHHHHHHHHHHHCCCcEEEEcchHcCeEe------------cCeeeeecHHHHHHHHHCCCE
Confidence 77776654 378999999999999999999998876654 578889999999999999999
Q ss_pred EEEcC-CccCCC--CCccccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHh---CCC
Q 018330 238 PVIAS-VAADEF--GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIE---DGK 308 (358)
Q Consensus 238 PVi~g-v~~~~~--G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~---~~~ 308 (358)
||++| ++.+.+ |+.+|+|+|++|+++|.+|+||+|+|+|||||||+++|. |+ ++|+++++.|+++++. .++
T Consensus 139 pVi~~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~ 218 (269)
T 3ll9_A 139 PVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTD 218 (269)
T ss_dssp EEEECEEEEBSCTTTSEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC--------------
T ss_pred EEECCCEEecccccCcceecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCc
Confidence 99999 677777 899999999999999999999999999999999987552 44 6899999999988765 457
Q ss_pred CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCC-ceEEc
Q 018330 309 VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGA-GTMIT 357 (358)
Q Consensus 309 vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~-GT~I~ 357 (358)
++|||.+||++|+.+++.|+ ++||+||+.|++|+ ++|+++++ ||+|.
T Consensus 219 ~tgGM~~Kl~aa~~a~~~Gv-~v~I~~g~~~~~l~-~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 219 VTGGMVGKIRELLLLAEKGV-ESEIINAAVPGNIE-RALLGEEVRGTRIT 266 (269)
T ss_dssp -----SHHHHHHHHHHHTTC-CEEEEESSSTTHHH-HHHHTCCCSSEEC-
T ss_pred CcCCcHHHHHHHHHHHhCCC-eEEEEeCCCchHHH-HHHCCCCCCcEEEE
Confidence 89999999999999999999 59999999999985 89999999 99986
No 15
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=100.00 E-value=1.4e-43 Score=334.23 Aligned_cols=236 Identities=22% Similarity=0.281 Sum_probs=200.9
Q ss_pred hcCC-eEEEEECCcccCCCCh-----hHHHHHHHHHHHHhHhCC------CeEEEEECChHHHhHHHHHcCCCcc----c
Q 018330 91 FRGK-TIVVKYGGAAMKPNQK-----DNLLASVVKDLVLLSVVG------LRPVLVHGGGPEINFWLKRFGIEPV----F 154 (358)
Q Consensus 91 ~~~k-~iVIKlGGs~l~~k~~-----~~l~~~~~~~Ia~L~~~G------~~vVLVhGgg~~i~~~l~~~gi~~~----~ 154 (358)
|+|. ++|||+||++|++++. +..+.+++++|+.++..| .++|||||||++++.+++++|+++. |
T Consensus 3 ~~~~m~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~i~~l~~~G~~~~~~~~vVlVhGGG~~~~~~~~~lgi~~~~~~~~ 82 (266)
T 3k4o_A 3 HGGSMLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIF 82 (266)
T ss_dssp ----CEEEEEECTTSSCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHGGGEEECSSSEEE
T ss_pred CCCceEEEEEEchHHeeCCCccCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEeCchHHHHHHHHHcCCCcccCccc
Confidence 6774 5999999999998531 235688999999988878 9999999999999999999999887 7
Q ss_pred c---CCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHH
Q 018330 155 R---DGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPL 231 (358)
Q Consensus 155 ~---~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~l 231 (358)
. .|+|+|+.+++ ++|+.|+++|+++|++++++++.|..++. .| ++++.+.|+.+
T Consensus 83 ~~~~~G~r~T~~a~~---------~ln~~l~~~l~~~G~~a~~l~~~d~~~~~------------~g--~~v~~~~i~~l 139 (266)
T 3k4o_A 83 INMEKGFWEIQRAMR---------RFNNIIIDTLQSYDIPAVSIQPSSFVVFG------------DK--LIFDTSAIKEM 139 (266)
T ss_dssp CCHHHHHHHHHHHHH---------HHHHHHHHHHHTTTCCEEEECGGGTCEES------------SS--CBCCCHHHHHH
T ss_pred ccccCceeHHHHHHH---------HHHHHHHHHHHHCCCcEEEeeHHHcCccc------------Cc--eEecHHHHHHH
Confidence 6 78888776643 68999999999999999999987765542 12 56789999999
Q ss_pred HhCCCeEEEcC-CccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhC----
Q 018330 232 VNSGHIPVIAS-VAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIED---- 306 (358)
Q Consensus 232 L~~G~IPVi~g-v~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~---- 306 (358)
|++|.|||+++ ++.+.+|+.+|+|+|++|+++|.+|+||+|+|+||||||| + || +++++++.+|++++.+.
T Consensus 140 L~~g~ipVi~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~--d~-~~i~~~~~~e~~~l~~~~~~~ 215 (266)
T 3k4o_A 140 LKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVL-I--DN-KPIKRIDKNNIYKILNYLSGS 215 (266)
T ss_dssp HHTTCEEEEECEEEEESSSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSSB-S--SS-SBCSEECTTTHHHHHHHHHST
T ss_pred HHCCCEEEEeCCEEEcCCCCeeeeCHHHHHHHHHHHcCCCEEEEEecCCeEE-e--CC-eecCcCCHHHHHHHHHHhccc
Confidence 99999999999 6777788899999999999999999999999999999999 4 33 78999998777776543
Q ss_pred --CCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 307 --GKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 307 --~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
++++|||.+||++|..+++ +++|+||+.|+.| .++|+++++||+|.+
T Consensus 216 ~~~~~tGGM~~Kv~aa~~a~~----~v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 264 (266)
T 3k4o_A 216 NSIDVTGGMKYKIEMIRKNKC----RGFVFNGNKANNI-YKALLGEVEGTEIDF 264 (266)
T ss_dssp TCSCCSSHHHHHHHHHHHTTC----EEEEEETTSTTHH-HHHHTTCCCSEEEEC
T ss_pred cCCcccCCHHHHHHHHHHHhc----CEEEEeCCCccHH-HHHhCCCCCceEEEe
Confidence 5789999999999998887 6999999999985 789999999999975
No 16
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=100.00 E-value=2.9e-42 Score=332.88 Aligned_cols=256 Identities=22% Similarity=0.292 Sum_probs=209.1
Q ss_pred cCCeEEEEECCcccCCCCh---h----HHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHH
Q 018330 92 RGKTIVVKYGGAAMKPNQK---D----NLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDAN 164 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~---~----~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~ 164 (358)
+++++|||+||++|++++. . +.+..++++|+.|++.|+++|||||||++++.++++++++++| |++.
T Consensus 3 ~~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~~~~~------t~~~ 76 (316)
T 2e9y_A 3 SGRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEALPPE------RPRQ 76 (316)
T ss_dssp -CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHTSCTT------SCCC
T ss_pred CCCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCCCCCC------CCHH
Confidence 3689999999999995431 0 3557899999999999999999999999999999999988754 6666
Q ss_pred HHHHHHHHHhhhh----HHHHHHHHHHcCCee--------EeecCCCccEEEeecC-C---C-------CCCCCcc--cc
Q 018330 165 TMEIVSMVLVGRV----NKSLVSLINKAGATA--------VGLSGMDGRLFTARPS-P---N-------SDKLGFV--GE 219 (358)
Q Consensus 165 ~~~~v~~vl~g~l----n~~lv~~L~~~Gi~a--------v~lsg~d~~ll~a~~~-~---~-------~~d~g~~--g~ 219 (358)
.|+.+.++.+|++ +..|.+.|.++|+++ +++++.|++++.+++. + + ..+++|+ |+
T Consensus 77 ~l~~~~~~~~G~i~~~l~~~l~~~l~~~g~~a~~~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~ 156 (316)
T 2e9y_A 77 PLYIATAMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRD 156 (316)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEEC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCccccceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeecc
Confidence 7888877767766 467778888999987 7999988765433310 0 0 0123443 33
Q ss_pred --------------eeecCHHHHHHHHhCCCeEEEc-----CCccCCCC----CccccChHHHHHHHHHHcCCCeEEEee
Q 018330 220 --------------VARVDPTVIEPLVNSGHIPVIA-----SVAADEFG----QSYNINADTVAGELAAALGAEKLILLT 276 (358)
Q Consensus 220 --------------v~~i~~~~I~~lL~~G~IPVi~-----gv~~~~~G----~~~~i~sD~~Aa~lA~~L~AdkLi~lT 276 (358)
++.++.+.|+.||++|.|||++ +++.+++| ..+|+|+|++|+++|.+|+||+|+|+|
T Consensus 157 ~g~g~r~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~~~~~g~~~g~~~~id~D~~Aa~lA~~l~Ad~LiilT 236 (316)
T 2e9y_A 157 PRGGFRRVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADLLVILT 236 (316)
T ss_dssp TTSSEEEEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEEECTTSCEEECSCCCCHHHHHHHHHHHTTCSEEEEEE
T ss_pred ccccceecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCeeECCCCCeecceeeeCHHHHHHHHHHHcCCCEEEEEe
Confidence 6678999999999999999999 56678888 778899999999999999999999999
Q ss_pred ccccccccccccC-cccccccHHHHHHHHhCCC-CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCce
Q 018330 277 DVAGILENREDPM-SLVKEIDIKGVKKMIEDGK-VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGT 354 (358)
Q Consensus 277 DV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~-vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT 354 (358)
||||||+++++|+ ++|++++++|+++++..+. .+|||.+|+++|..+++.|+++++|++ ++. +.++|++ +.||
T Consensus 237 dVdGVy~dp~~p~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~-l~~~l~g-~~GT 311 (316)
T 2e9y_A 237 DVPGVAVNYGREGERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGS---LEE-ARQVLSL-QAGT 311 (316)
T ss_dssp SSSSCEETTTSTTCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEE---STT-HHHHHTT-SSSE
T ss_pred CchHhhCCCCCCCCcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECc---HHH-HHHHHcC-CCCe
Confidence 9999999766675 7999999999999987665 459999999999999999997799997 444 4788987 8999
Q ss_pred EEcC
Q 018330 355 MITG 358 (358)
Q Consensus 355 ~I~~ 358 (358)
+|.+
T Consensus 312 ~i~~ 315 (316)
T 2e9y_A 312 VVML 315 (316)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9964
No 17
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=100.00 E-value=3.8e-42 Score=321.58 Aligned_cols=234 Identities=20% Similarity=0.273 Sum_probs=186.1
Q ss_pred CeEEEEECCcccCCCCh-----hHHHHHHHHHHHHhHhCCCeEE-EEECChHHHhHHHHHcCCCccccCCcccCCHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK-----DNLLASVVKDLVLLSVVGLRPV-LVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTME 167 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~-----~~l~~~~~~~Ia~L~~~G~~vV-LVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~ 167 (358)
|++||||||+++++++. +..+.+++++|+. |+++| ||||||++++.+++++|+++.|.+ ++...|.
T Consensus 4 k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~----G~~vv~lVhGGG~~~~~~~~~~gi~~~~~~----~d~~gl~ 75 (249)
T 3ll5_A 4 TMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSFGHIKAMEFGLPGPKNP----RSSIGYS 75 (249)
T ss_dssp CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT----CTTEEEEEECCGGGTHHHHHHHTCSEECCH----HHHHHHH
T ss_pred eEEEEEECccEEecCcccccchHHHHHHHHHHHhc----CCceEEEEECccHHHHHHHHHhCCCcCCCc----cccccHH
Confidence 79999999999998531 1345667777764 99999 999999999999999999987643 5667788
Q ss_pred HHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccC
Q 018330 168 IVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAAD 246 (358)
Q Consensus 168 ~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~ 246 (358)
+..+++ .++|+.++++|+++|++++++++.|. +++|++ +.+.|+.+|++|.|||++| ...+
T Consensus 76 ~t~~~~-~~ln~~~v~~l~~~G~~a~~l~~~~~--------------~~~g~v---~~~~i~~ll~~g~ipVi~~~~~~~ 137 (249)
T 3ll5_A 76 IVHRDM-ENLDLMVIDAMIEMGMRPISVPISAL--------------RYDGRF---DYTPLIRYIDAGFVPVSYGDVYIK 137 (249)
T ss_dssp HHHHHH-HHHHHHHHHHHHHTTCCEEECCGGGS--------------CBSSSB---CCHHHHHHHHTTCEEEEECEEEEE
T ss_pred HHHHHH-HHHHHHHHHHHHHCCCcEEEEcHHHc--------------ccccEE---cHHHHHHHHHCCCEEEECCCEEEc
Confidence 777773 58999999999999999999987543 345666 8899999999999999998 3445
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
.+|+.+|+|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|+++. +++......++++|||.+|+++|+.+
T Consensus 138 ~~~~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~~~~~~~~~tGgM~~Kl~aA~~a 216 (249)
T 3ll5_A 138 DEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNITFDRVQNDVTGGIGKKFESMVKM 216 (249)
T ss_dssp ETTEEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC-------------HHHHHHHHHH
T ss_pred CCCceeeecHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHhcccCCCeeECCHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999755 565 5899994 34444445567899999999999999
Q ss_pred -HHcCCCEEEEEeCCCcchHHHHHHcCCCC-ceEEc
Q 018330 324 -LAQGVRTASIIDGRVEHSLLLEILTDAGA-GTMIT 357 (358)
Q Consensus 324 -l~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~-GT~I~ 357 (358)
++.|+ +++|+||+.|++|+. |.++++ ||+|.
T Consensus 217 ~~~~Gv-~v~I~~g~~~~~l~~--l~g~~~~GT~i~ 249 (249)
T 3ll5_A 217 KSSVKN-GVYLINGNHPERIGD--IGKESFIGTVIR 249 (249)
T ss_dssp HTTCTT-CEEEEETTSGGGGGG--TTSTTCCSEEEC
T ss_pred HHhcCC-EEEEEeCCChhHHHH--hCCCCCCCEEeC
Confidence 88899 599999999999876 667888 99984
No 18
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=100.00 E-value=8.4e-43 Score=332.21 Aligned_cols=246 Identities=20% Similarity=0.275 Sum_probs=192.1
Q ss_pred HHHHhhcCCeEEEEECCcccCCCCh-----hHHHHHHHHHHHHhHhCCC-eEEEEECChHHHhHHHHHcCCCccccCCcc
Q 018330 86 PFIQKFRGKTIVVKYGGAAMKPNQK-----DNLLASVVKDLVLLSVVGL-RPVLVHGGGPEINFWLKRFGIEPVFRDGLR 159 (358)
Q Consensus 86 pyi~~~~~k~iVIKlGGs~l~~k~~-----~~l~~~~~~~Ia~L~~~G~-~vVLVhGgg~~i~~~l~~~gi~~~~~~g~r 159 (358)
.|++.+++ ++||||||+++++++. .+.+..++++|+.|++.|+ ++|||||||++++.+++++++++.+.
T Consensus 17 ~~~~~~~~-~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l~~~~~~~~~~---- 91 (286)
T 3d40_A 17 RGSHMTPD-FLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHDSTHAFS---- 91 (286)
T ss_dssp CSTTSCCS-EEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC------------CCT----
T ss_pred hhhccCCC-EEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHcCCCcccc----
Confidence 37777754 9999999999998531 2355889999999988898 79999999999999998888775432
Q ss_pred cCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEE
Q 018330 160 VTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPV 239 (358)
Q Consensus 160 vt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPV 239 (358)
.. ...+. .+++|..|+++|+++|++++++++.+.++ + . .| ++.++.+.|+.+|++|.|||
T Consensus 92 ---~~-~~~vt---~g~l~~~l~~~l~~~G~~a~~l~~~~~~~-t-~----------dg-~~~~~~~~i~~lL~~g~IpV 151 (286)
T 3d40_A 92 ---LA-GLTEA---TFEVKKRWAEKLRGIGVDAFPLQLAAMCT-L-R----------NG-IPQLRSEVLRDVLDHGALPV 151 (286)
T ss_dssp ---TH-HHHHH---HHHHHHHHHHHHHHTTCCEEECCGGGTEE-E-E----------TT-EEEECCSHHHHHHHTTCEEE
T ss_pred ---hh-cchhh---HHHHHHHHHHHHHHcCCcEEEEEeecCCc-c-c----------CC-eEEehHHHHHHHHHCcCEEE
Confidence 11 11112 36789999999999999999999887775 2 1 13 67788999999999999999
Q ss_pred EcC-CccCCCCCccccChHHHHHHHHHH-cCCCeEEEeeccccccccccccCcccccccHHHHHHHHh------CCCCCC
Q 018330 240 IAS-VAADEFGQSYNINADTVAGELAAA-LGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIE------DGKVGG 311 (358)
Q Consensus 240 i~g-v~~~~~G~~~~i~sD~~Aa~lA~~-L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~------~~~vtG 311 (358)
++| ++.+.+|+.+++|+|++|+++|.+ |+||+|+|+|||||||+++|++.++|++|++.|++++.+ .++++|
T Consensus 152 i~gd~~~~~~g~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~~a~~i~~is~~e~~~l~~~~~~~~~~~~tg 231 (286)
T 3d40_A 152 LAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAGGDTILPEVDARSPEQAYAALWGSSEWDATG 231 (286)
T ss_dssp EECEEEEBTTSCEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC---CEECCEEETTSCHHHHHHHHHSCC----C
T ss_pred EcCCeEEcCCCCEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCCCCcCCcccCHHHHHHHHHhhccccCCcccC
Confidence 999 777888988999999999999999 999999999999999998544368999999987666643 456899
Q ss_pred CcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcC-----CCC-ceEEcC
Q 018330 312 GMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTD-----AGA-GTMITG 358 (358)
Q Consensus 312 GM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~-----~g~-GT~I~~ 358 (358)
||.+|+++|..+++.|++ ++|+||+.|++| .++|++ +.+ ||.|.+
T Consensus 232 gM~~Kl~Aa~~a~~~gv~-v~I~~g~~p~~l-~~l~t~~~~~~~~~~~t~i~~ 282 (286)
T 3d40_A 232 AMHTKLDALVTCARRGAE-CFIMRGDPGSDL-EFLTAPFSSWPAHVRSTRITT 282 (286)
T ss_dssp HHHHHHHHHHHHHHTTCE-EEEEECCTTCCC-GGGGSCGGGSCTTCCCEEEEC
T ss_pred cHHHHHHHHHHHHHCCCc-EEEEeCCCCCcH-HHHhcCcccCcccccceeeee
Confidence 999999999999999998 999999999998 889998 776 999964
No 19
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=100.00 E-value=3.7e-41 Score=324.28 Aligned_cols=256 Identities=23% Similarity=0.302 Sum_probs=202.8
Q ss_pred CCeEEEEECCcccCCCC-h-h---HHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQ-K-D---NLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTME 167 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~-~-~---~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~ 167 (358)
++++|||+||++++++. . + +.+..++++|+.|++.|+++|||||||++++.++++++++++| +++.+.++
T Consensus 2 ~k~iVIKlGGs~l~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~~~~~~~~-----~~~~~~l~ 76 (310)
T 2we5_A 2 GKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSE-----KNPAMPLD 76 (310)
T ss_dssp CCEEEEECCGGGGCCSSCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTCSS-----SSCCCCHH
T ss_pred CcEEEEEEChHHhcCCCCChHHHHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhHHHHHcCCCCCC-----CCCHHHHH
Confidence 57999999999998621 1 1 4557899999999999999999999999999999998877654 46777799
Q ss_pred HHHHHHhhhhHHHHH----HHHHHcCCee--------EeecCCCcc------------------EEEeecC--CCCCCCC
Q 018330 168 IVSMVLVGRVNKSLV----SLINKAGATA--------VGLSGMDGR------------------LFTARPS--PNSDKLG 215 (358)
Q Consensus 168 ~v~~vl~g~ln~~lv----~~L~~~Gi~a--------v~lsg~d~~------------------ll~a~~~--~~~~d~g 215 (358)
++.++.+|+++..+. ..|...|++. .+++..|.. ++.+... ......+
T Consensus 77 ~~~a~~~G~l~~~i~~al~~~l~~~g~~~~v~~~l~~~~v~~~d~~f~~~~~~vg~~~t~~da~~l~~~~~~~~~~~~~~ 156 (310)
T 2we5_A 77 TCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRG 156 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCHHHHSCCEEEEEEECHHHHHHHHTTTCCEEECTTSC
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcCCchhhHhhhhhhcccccchhhcccCceeEEeccHHHHHHHHhccccccccCCcc
Confidence 998888898876555 4577788763 344333332 1111000 0000122
Q ss_pred cc---c---ceeecCHHHHHHHHhCCCeEEEc-----CC-ccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccc
Q 018330 216 FV---G---EVARVDPTVIEPLVNSGHIPVIA-----SV-AADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILE 283 (358)
Q Consensus 216 ~~---g---~v~~i~~~~I~~lL~~G~IPVi~-----gv-~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~ 283 (358)
|. | +++.++.+.|+.+|++|+|||++ |+ ..+..|+.+|+|+|++|+++|.+|+||+|+|+|||||||+
T Consensus 157 ~~~vv~sp~~i~~v~~~~i~~lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~ 236 (310)
T 2we5_A 157 WRKVVPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCI 236 (310)
T ss_dssp EEEEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEETTTTEECCCCCCHHHHHHHHHHHTTCSEEEEECSCSSCEE
T ss_pred eeeccCCcccceeehHHHHHHHHHCCCEEEEECCCCCCCcCCCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeCchHhhC
Confidence 31 3 55668999999999999999999 44 4556788999999999999999999999999999999999
Q ss_pred cccccC-cccccccHHHHHHHHhCCCCC-CCcHHHHHHHHHHHHcCCC-EEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 284 NREDPM-SLVKEIDIKGVKKMIEDGKVG-GGMIPKVNCCIRSLAQGVR-TASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 284 ~~~dp~-~lI~~I~~~e~~~l~~~~~vt-GGM~~Kv~aA~~al~~Gv~-~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
++++|+ ++|++++++|+++++..+.++ |||.+|+++|..+++.|+. +++|++ ++. +.++|++++.||+|.
T Consensus 237 dp~~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~-l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 237 NYGKPDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS---LEN-LGSMSGDEIVGTVVT 309 (310)
T ss_dssp STTSTTCEECCEEEHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGG-GGGCBTTBCCSEEEE
T ss_pred CCCCCCCeECCEEcHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECc---HHH-HHHHHcCCCCCeEEe
Confidence 766674 799999999999998877666 9999999999999999994 899997 445 468899989999996
No 20
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=100.00 E-value=6.8e-41 Score=322.96 Aligned_cols=256 Identities=23% Similarity=0.358 Sum_probs=204.5
Q ss_pred cCCeEEEEECCcccCCCCh-------hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHH
Q 018330 92 RGKTIVVKYGGAAMKPNQK-------DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDAN 164 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~-------~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~ 164 (358)
+++++||||||++|++++. .+.+.+++++|+.|++.|+++|||||||++++.++.++++.++| + +++..
T Consensus 1 m~k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~~~-~---~~~~~ 76 (314)
T 1e19_A 1 MGKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQAT-Y---GIPAQ 76 (314)
T ss_dssp -CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHH-H---CCCCC
T ss_pred CCCEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCcccc-C---CCChh
Confidence 3689999999999996431 13457899999999999999999999999999999888877655 2 45666
Q ss_pred HHHHHHHHHhhhhH----HHHHHHHHHcCCee--------EeecCCCccE----------EE---eecCCCCCCCCcc--
Q 018330 165 TMEIVSMVLVGRVN----KSLVSLINKAGATA--------VGLSGMDGRL----------FT---ARPSPNSDKLGFV-- 217 (358)
Q Consensus 165 ~~~~v~~vl~g~ln----~~lv~~L~~~Gi~a--------v~lsg~d~~l----------l~---a~~~~~~~d~g~~-- 217 (358)
.++++.++++|++| ..|.+.|.++|+++ +++++.|+.+ ++ +++.. .|+||+
T Consensus 77 ~l~~~~a~~~G~i~~~l~~~l~~~l~~~gi~a~~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~--~~~g~~~~ 154 (314)
T 1e19_A 77 PMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLA--REKGWIVK 154 (314)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHH--HHHCCEEE
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchhhhhhheeeeecccchhhccccccccceecHHHhhhhh--hhcCcccc
Confidence 78888888778655 45557888999986 6788888533 31 11100 023332
Q ss_pred cc--------------eeecCHHHHHHHHhCCCeEEEc-----CCccCCC---CCccccChHHHHHHHHHHcCCCeEEEe
Q 018330 218 GE--------------VARVDPTVIEPLVNSGHIPVIA-----SVAADEF---GQSYNINADTVAGELAAALGAEKLILL 275 (358)
Q Consensus 218 g~--------------v~~i~~~~I~~lL~~G~IPVi~-----gv~~~~~---G~~~~i~sD~~Aa~lA~~L~AdkLi~l 275 (358)
|+ ++.++.+.|+.||++|+|||++ |++.+.+ |..+|+|+|++|+.+|.+|+||+|+|+
T Consensus 155 g~~~~~~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li~l 234 (314)
T 1e19_A 155 EDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMIL 234 (314)
T ss_dssp ECTTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEE
T ss_pred ccccccccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeEECCCCcceeEEeccHHHHHHHHHHHcCCCEEEEe
Confidence 22 6778999999999999999998 5555555 567899999999999999999999999
Q ss_pred eccccccccccccC-cccccccHHHHHHHHhCCC-CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCc
Q 018330 276 TDVAGILENREDPM-SLVKEIDIKGVKKMIEDGK-VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAG 353 (358)
Q Consensus 276 TDV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~-vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~G 353 (358)
|||||||+++|+|+ ++|++++++|+++++..+. .+|||.+||++|.++++.++.+++|+++ +. +.++|++ +.|
T Consensus 235 TdVdGvy~~~p~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~---~~-l~~~~~g-~~G 309 (314)
T 1e19_A 235 TDVNGAALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHL---EK-AVEALEG-KTG 309 (314)
T ss_dssp ESSSSCEETTTSTTCEECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEG---GG-HHHHHTT-SSS
T ss_pred ccCCEEECCCCCCCCeECCEECHHHHHHHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecH---HH-HHHHHcC-CCC
Confidence 99999999877774 6999999999999987664 5699999999999999988778999984 33 5789987 699
Q ss_pred eEEcC
Q 018330 354 TMITG 358 (358)
Q Consensus 354 T~I~~ 358 (358)
|+|.+
T Consensus 310 T~i~~ 314 (314)
T 1e19_A 310 TQVLP 314 (314)
T ss_dssp EEEEC
T ss_pred eEEcC
Confidence 99975
No 21
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=100.00 E-value=1.4e-38 Score=301.60 Aligned_cols=233 Identities=19% Similarity=0.184 Sum_probs=187.2
Q ss_pred HHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCccc
Q 018330 81 LSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRV 160 (358)
Q Consensus 81 l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rv 160 (358)
=.+++|||+.|++ ++||||||+ +++++ +..+.+++++|+.|+ .|+++|||||||++++.+++ ++.+ .|+
T Consensus 28 ~~~~~pyi~~~~~-~iVIKiGGs-l~~~~-~~~l~~l~~~I~~l~-~G~~vVlV~GGg~~~~~~~~-~~~~----~gl-- 96 (276)
T 2ogx_A 28 PVAGKRPIRLLPW-LQVVKIGGR-VMDRG-ADAILPLVEELRKLL-PEHRLLILTGAGVRARHVFS-VGLD----LGL-- 96 (276)
T ss_dssp ---CCCCCCSSTT-EEEEEECHH-HHTTT-HHHHHHHHHHHHHHT-TTCEEEEEECCTHHHHHHHH-HHHH----TTC--
T ss_pred hcccCchhhhcCC-eEEEEEChh-hcCCC-HHHHHHHHHHHHHHh-CCCeEEEEECcHHHHHHHHh-ccCc----CCC--
Confidence 3589999999999 999999999 88743 345689999999998 79999999999999987766 4432 233
Q ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHH-HcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEE
Q 018330 161 TDANTMEIVSMVLVGRVNKSLVSLIN-KAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPV 239 (358)
Q Consensus 161 t~~~~~~~v~~vl~g~ln~~lv~~L~-~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPV 239 (358)
+..+++.+.+. .+++|..+++.|. .+|++++++ ..+.+.|+.+|++|.|||
T Consensus 97 -~~~~l~~v~~~-~~~~n~~l~~~ll~~~g~~~v~~--------------------------~~~~~~i~~lL~~g~IpV 148 (276)
T 2ogx_A 97 -PVGSLAPLAAS-EAGQNGHILAAMLASEGVSYVEH--------------------------PTVADQLAIHLSATRAVV 148 (276)
T ss_dssp -CHHHHHHHHHH-HHHHHHHHHHHHHGGGTCCBCCH--------------------------HHHHHHHHHHHHHSSEEE
T ss_pred -CHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCcccc--------------------------cChHHHHHHHHhCCCEEE
Confidence 34577877776 4788998887766 777754211 126788999999999999
Q ss_pred EcCC-ccC--CC-CC-ccccChHHHHHHHHHHcCCCeEEEeecccccccccc----ccC-cccccccHHHHHHHHhCCCC
Q 018330 240 IASV-AAD--EF-GQ-SYNINADTVAGELAAALGAEKLILLTDVAGILENRE----DPM-SLVKEIDIKGVKKMIEDGKV 309 (358)
Q Consensus 240 i~gv-~~~--~~-G~-~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~----dp~-~lI~~I~~~e~~~l~~~~~v 309 (358)
++|+ +.+ +. |. .+++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.++. .
T Consensus 149 i~~~~~~~~~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~----g 224 (276)
T 2ogx_A 149 GSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSE----G 224 (276)
T ss_dssp EESSCTTGGGCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSC----S
T ss_pred EcCCcccccccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHh----C
Confidence 9993 343 32 33 489999999999999999999999999999999754 233 799999999998885 5
Q ss_pred CCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 310 GGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 310 tGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+|||.+|+.++..+++.|+ +++|+||+.|++| .++|++++.||+|.+
T Consensus 225 ~ggM~~K~~~~~~~~~~~~-~v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 271 (276)
T 2ogx_A 225 PLPVDRALLDVMATARHIE-RVQVVNGLVPGRL-TAALRGEHVGTLIRT 271 (276)
T ss_dssp CCSSCHHHHHHHHTCSSCC-EEEEEETTSTTHH-HHHHTTCCCSEEEEC
T ss_pred cCChHHHHHHHHHHhcCCC-eEEEEECCCccHH-HHHHcCCCCceEEcc
Confidence 7999999988877766676 5999999999998 567788899999963
No 22
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=100.00 E-value=2.7e-38 Score=295.36 Aligned_cols=233 Identities=16% Similarity=0.180 Sum_probs=184.7
Q ss_pred CeEEEEECCcccCCCC---hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQ---KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~---~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
|++||||||++++ ++ .++.+..++++|+.+++. +++|||||||++ ..+.+++++. .++++.+++..+.
T Consensus 2 k~iViKlGGs~l~-~~~~~~~~~~~~~~~~i~~l~~~-~~vVlVhgGg~~--~~~~~~g~~~-----~~~~~~~~l~~~~ 72 (251)
T 2ako_A 2 KRIVVKVGSHVIS-EENTLSFERLKNLVAFLAKLMEK-YEVILVTSAAIS--AGHTKLDIDR-----KNLINKQVLAAIG 72 (251)
T ss_dssp CEEEEEECHHHHB-CSSSBCHHHHHHHHHHHHHHHHH-SEEEEEECCHHH--HHHHHCCCCS-----SSHHHHHHHHHHH
T ss_pred CEEEEEeCcceeC-CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCHHH--HHHHHhCCcc-----CCchHHHHHHHHH
Confidence 6899999999999 32 145568899999999877 999999999955 5677888875 2555544333332
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCH-HHHHHHHhCCCeEEEcC---CccC
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDP-TVIEPLVNSGHIPVIAS---VAAD 246 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~-~~I~~lL~~G~IPVi~g---v~~~ 246 (358)
...++..+.++|.++|+++..+ ...+ .| +.+++++++. +.|+.+|++|+|||+++ ++.
T Consensus 73 ---q~~l~~~~~~~l~~~G~~~~~i-------~~~~-----~~--~~~~~~~~~~~~~i~~ll~~g~ipVi~~~d~v~~- 134 (251)
T 2ako_A 73 ---QPFLISVYNELLAKFNKLGGQI-------LLTG-----KD--FDSRKATKHAKNAIDMMINLGILPIINENDATAI- 134 (251)
T ss_dssp ---HHHHHHHHHHHHGGGTCCEEEE-------EECT-----GG--GGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCC-
T ss_pred ---HHHHHHHHHHHHHHcCCcEEEE-------Eecc-----ch--hcCcceEehHHHHHHHHHHCCCEEEEeCCCceee-
Confidence 3467888999999999987533 2221 12 4677777776 99999999999999994 433
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHH--HHHHHHh---CCCCCCCcHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIK--GVKKMIE---DGKVGGGMIPKVN 318 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~--e~~~l~~---~~~vtGGM~~Kv~ 318 (358)
++.+++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++ |+.+++. .+.++|||.+|++
T Consensus 135 --~~~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~ 212 (251)
T 2ako_A 135 --EEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLK 212 (251)
T ss_dssp --HHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHH
T ss_pred --cceeecCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHH
Confidence 33478999999999999999999999999999999654 244 799999998 9988876 4578999999999
Q ss_pred HHHHHHHcCCCEEEEEeCCCcchHHHH--HHcCCCCceEEc
Q 018330 319 CCIRSLAQGVRTASIIDGRVEHSLLLE--ILTDAGAGTMIT 357 (358)
Q Consensus 319 aA~~al~~Gv~~v~Ii~G~~~~~Ll~e--l~~~~g~GT~I~ 357 (358)
+|..+++.|++ ++|+||+.|++| .+ +|+++++||+|.
T Consensus 213 aa~~a~~~gv~-v~I~~g~~~~~l-~~~~~~~g~~~GT~i~ 251 (251)
T 2ako_A 213 AAKFLLEHNKK-MFLASGFDLSVA-KTFLLEDKQIGGTLFE 251 (251)
T ss_dssp HHHHHHHTTCE-EEEEESSSCHHH-HHHHHSCCCCSSEEEC
T ss_pred HHHHHHHCCCe-EEEEeCCChhhh-hhhHHhcCCCCceEeC
Confidence 99999999998 999999999998 67 899999999984
No 23
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=100.00 E-value=2.4e-37 Score=303.81 Aligned_cols=242 Identities=20% Similarity=0.307 Sum_probs=166.1
Q ss_pred CCeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIV 169 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v 169 (358)
.+++||||||+++++++. ...+..++++|+.|++.|+++|||||||.+.+ +.+++++. +..+.+.++.+
T Consensus 4 ~k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGgi~~g--~~~lg~~~------~~~~l~~~qa~ 75 (367)
T 2j5v_A 4 SQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAG--REHLGYPE------LPATIASKQLL 75 (367)
T ss_dssp CCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHH--HHHHTSCC------CCSSHHHHHHH
T ss_pred CCEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHH--HHHcCCCC------CCCCHHHHHHH
Confidence 379999999999998531 24558899999999999999999999996644 46777764 23333344444
Q ss_pred HHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCH-HHHHHHHhCCCeEEEcCCccCCC
Q 018330 170 SMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDP-TVIEPLVNSGHIPVIASVAADEF 248 (358)
Q Consensus 170 ~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~-~~I~~lL~~G~IPVi~gv~~~~~ 248 (358)
..+....++..|.+.|+++|+++. +++.... | +.++.++++. +.|+.||++|.|||+++...-..
T Consensus 76 aavGq~~l~~~~~~~l~~~G~~~~-------qvllt~~-----d--~~~~~r~~n~~~~i~~LL~~g~IPIv~end~v~~ 141 (367)
T 2j5v_A 76 AAVGQSRLIQLWEQLFSIYGIHVG-------QMLLTRA-----D--MEDRERFLNARDTLRALLDNNVVPVINENDAVAT 141 (367)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCEE-------EEEECGG-----G--GSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCceE-------EEEEecc-----c--ccCceEEEhHHHHHHHHHHCCCEEEECCCCceec
Confidence 333334578899999999999974 4433331 2 3566677775 89999999999999995322123
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccH--HHHHHHHhC---CCCCCCcHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDI--KGVKKMIED---GKVGGGMIPKVNCC 320 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~--~e~~~l~~~---~~vtGGM~~Kv~aA 320 (358)
++..++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|+++++ +|+++++.. +..+|||.+|+++|
T Consensus 142 ~el~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa 221 (367)
T 2j5v_A 142 AEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAA 221 (367)
T ss_dssp GGGCCCSHHHHHHHHHHHHTCSEEEEEECC------------------------------------------CHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHH
Confidence 45789999999999999999999999999999999754 444 69999999 899998764 46899999999999
Q ss_pred HHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
..+++.|++ ++|+||+.|+.| .++|++++.||+|.+
T Consensus 222 ~~a~~~Gv~-v~I~~g~~~~~L-~~~l~g~~~GT~i~~ 257 (367)
T 2j5v_A 222 DVACRAGID-TIIAAGSKPGVI-GDVMEGISVGTLFHA 257 (367)
T ss_dssp HHHHHTTCE-EEEEETTSTTHH-HHHHHTCCCSEEECC
T ss_pred HHHHHcCCC-EEEEcCCCchHH-HHHhcCCCCcEEEEc
Confidence 999999998 999999999997 789999999999964
No 24
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=100.00 E-value=6e-37 Score=281.99 Aligned_cols=215 Identities=18% Similarity=0.251 Sum_probs=174.9
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHH---HHHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW---LKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~---l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
+++||||||+++++++ ++.+..++++|+.+++.|+++|||||||++++.+ ++++++++ .+++.+.
T Consensus 1 ~~iViK~GGs~l~~~~-~~~~~~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~~g~~~-----------~~~~~~~ 68 (226)
T 2j4j_A 1 MNIILKISGKFFDEDN-VDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGE-----------AYLDLLG 68 (226)
T ss_dssp CEEEEEECTHHHHTCC-HHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTTCCH-----------HHHHHHH
T ss_pred CeEEEEeccccccCCC-HHHHHHHHHHHHHHHhCCCeEEEEECcchHhchhHHHHHHhCCCc-----------ccHHHHH
Confidence 4799999999999431 5566899999999988899999999999999885 67777653 3455554
Q ss_pred HHHhhhhHHHHH-HHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCC
Q 018330 171 MVLVGRVNKSLV-SLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFG 249 (358)
Q Consensus 171 ~vl~g~ln~~lv-~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G 249 (358)
+. ...+|..+. ..|+++|+++ . .++.+.++.+|+.|.|||++| |
T Consensus 69 ~~-~~~~~~~l~~~~l~~~g~~~-------------~---------------~~~~~~i~~ll~~g~ipVi~g------g 113 (226)
T 2j4j_A 69 IW-ASRLNAYLVMFSLQDLAYMH-------------V---------------PQSLEEFIQDWSHGKVVVTGG------F 113 (226)
T ss_dssp HH-HHHHHHHHHHHHHTTSBCSC-------------C---------------CSSHHHHHHHHTTSSBEEECC------C
T ss_pred HH-HHHHHHHHHHHHHHHhCCCC-------------C---------------cCCHHHHHHHHHCCCEEEEcC------C
Confidence 43 567888886 4888888743 0 135778999999999999999 2
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhC-CCCCCCc--HHHHHHHHHH
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIED-GKVGGGM--IPKVNCCIRS 323 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~-~~vtGGM--~~Kv~aA~~a 323 (358)
..++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.+++.. +..+||| .+|+++|..+
T Consensus 114 -~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~~a~~~a 192 (226)
T 2j4j_A 114 -QPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIV 192 (226)
T ss_dssp -STTSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC----------CCSCHHHHHHH
T ss_pred -CCCCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchHHHHHHH
Confidence 348999999999999999999999999999999754 344 79999999999999765 6678999 9999999999
Q ss_pred HHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 324 LAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+.|++ ++|+||+.|+.| .++|+++++||+|.+
T Consensus 193 ~~~gi~-v~I~~~~~~~~l-~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 193 ERSKIR-VIVMNYRKLNRI-IDILKGEEVSSIIEP 225 (226)
T ss_dssp HHTTCE-EEEEEGGGGGGH-HHHHTTCSSCEEEEC
T ss_pred HHCCCe-EEEEeCCChhHH-HHHHcCCCCceEEee
Confidence 999998 999999999998 789999999999975
No 25
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=100.00 E-value=7.3e-37 Score=284.31 Aligned_cols=226 Identities=17% Similarity=0.178 Sum_probs=179.0
Q ss_pred cCCeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCC-cccCCHHHH
Q 018330 92 RGKTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDG-LRVTDANTM 166 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g-~rvt~~~~~ 166 (358)
+.|++|||+||++|++++ .++.+++++++|+.++..|+++|||||||+.++.+... ..| ++.+ ..
T Consensus 6 ~~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~~~-------~~G~~~~~---~~ 75 (240)
T 4a7w_A 6 KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAA-------QGGIIRRT---SG 75 (240)
T ss_dssp CCCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC----------------CCCHH---HH
T ss_pred CCCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhHHH-------hcCCCCCC---CH
Confidence 358999999999999632 25667899999999999999999999999887544321 124 3333 33
Q ss_pred HHHHHHHhhhhHHHHH-HHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCcc
Q 018330 167 EIVSMVLVGRVNKSLV-SLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAA 245 (358)
Q Consensus 167 ~~v~~vl~g~ln~~lv-~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~ 245 (358)
+.+.| +++.+|..++ ++|+++|++++++++.|.... ....+.+.+..+|++|.|||+++.
T Consensus 76 ~~~~~-la~~~n~~l~~~~l~~~G~~av~lt~~d~~~~----------------~~~~~~~~i~~lL~~g~ipVi~~~-- 136 (240)
T 4a7w_A 76 DYMGM-LATVINAVAMQEALEHIGLDTRVQSAIEIKEI----------------CESYIYRKAIRHLEKGRVVIFGAG-- 136 (240)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTTCCEEEEESSCCTTT----------------SEECCHHHHHHHHHTTCEEEEEST--
T ss_pred HHHHH-HHHHHHHHHHHHHHHHCCCCEEEecHHHcCcc----------------cCcCcHHHHHHHHHCCCEEEEeCC--
Confidence 44444 4678899876 899999999999997665321 133578899999999999999982
Q ss_pred CCCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 018330 246 DEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIR 322 (358)
Q Consensus 246 ~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~ 322 (358)
.|.. ++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.+. ..++| |+++|..
T Consensus 137 --~g~~-~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~-----g~~~m--~~~a~~~ 206 (240)
T 4a7w_A 137 --TGNP-FFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG-----DIEVM--DDTAISL 206 (240)
T ss_dssp --TSCT-TSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHHHS-----SCCSS--CHHHHHH
T ss_pred --CCCC-CCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHHhc-----Ccccc--HHHHHHH
Confidence 3443 6899999999999999999999999999999865 455 69999999988764 35788 5789999
Q ss_pred HHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 323 SLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 323 al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.+.|++ +||+||+.|++|+.++++++++||+|.
T Consensus 207 a~~~gv~-v~I~~g~~~~~l~~~l~g~~g~GT~i~ 240 (240)
T 4a7w_A 207 AKDNKLP-IVVCNMFKKGNLLQVIKHQQGVFSMVK 240 (240)
T ss_dssp HHHTTCC-EEEEESSSTTHHHHHHHHSCSSCEEEC
T ss_pred HHHCCCe-EEEECCCCccHHHHHHCCCCCCceeeC
Confidence 9999998 999999999999888888889999984
No 26
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=100.00 E-value=4e-36 Score=290.53 Aligned_cols=260 Identities=18% Similarity=0.252 Sum_probs=186.9
Q ss_pred CeEEEEECCcccCCCChh--HHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKD--NLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSM 171 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~--~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~ 171 (358)
|+|||||||++|.++..+ ++...++++|+.|++.|+++|||||||||++.++.+++....+..+.+......+....+
T Consensus 25 kRIVIklGGnAL~~~~~~q~~~~~~~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~~~~~~~~~~l~~~~a~tq 104 (332)
T 4axs_A 25 SRIVIALGGNALGDNPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAEAGGMSQ 104 (332)
T ss_dssp -CEEEEECGGGGCSSHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTTTTSCCCCCCHHHHHHHHH
T ss_pred ceEEEEEChhhcCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhccccCCCCCchhHHHHHHHH
Confidence 689999999999874322 344678999999999999999999999999887766544433334444444443333332
Q ss_pred HH-hhhhHHHHHHHHHHcCCee--------EeecCCCccEEE-eecC-------------------------CCCCCCCc
Q 018330 172 VL-VGRVNKSLVSLINKAGATA--------VGLSGMDGRLFT-ARPS-------------------------PNSDKLGF 216 (358)
Q Consensus 172 vl-~g~ln~~lv~~L~~~Gi~a--------v~lsg~d~~ll~-a~~~-------------------------~~~~d~g~ 216 (358)
-. ...++..|...|.++|+.. +.++..|..+.. .++. +.+.+..+
T Consensus 105 g~ig~~l~~~l~~~l~~~gi~~~v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~~~~~~~~~~~~~g~rrvV~s 184 (332)
T 4axs_A 105 GYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEANNPNSVIVEDAGRGFRKVVAS 184 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEECCCEEEECTTCHHHHSCCEECSCCCC--------CTTSCCC--------CEECC
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceeeeeeeeeecccchhhhCcCceeccccCHHHHHHHHhcCCEEEEccCCCceEECCC
Confidence 21 1234566777788887642 333333311110 0000 00112234
Q ss_pred ccceeecCHHHHHHHHhCCCeEEEcCC--------ccCCCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccccc
Q 018330 217 VGEVARVDPTVIEPLVNSGHIPVIASV--------AADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDP 288 (358)
Q Consensus 217 ~g~v~~i~~~~I~~lL~~G~IPVi~gv--------~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp 288 (358)
.+.+..++.+.|..|+++|+|||.++. ..+..|..+|+|+|++|+.+|..|+||+|||||||||||+++++|
T Consensus 185 p~p~~ive~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~~ 264 (332)
T 4axs_A 185 PIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNKP 264 (332)
T ss_dssp CCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTST
T ss_pred CCCceeecHHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEEEEecCCceEcCCCCc
Confidence 455567899999999999999887641 123357889999999999999999999999999999999988777
Q ss_pred C-cccccccHHHHHHHHhCCCC-CCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 289 M-SLVKEIDIKGVKKMIEDGKV-GGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 289 ~-~lI~~I~~~e~~~l~~~~~v-tGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+ ++|++++.+|+++++..+.+ +|||.||+++|+++++.|+.+++|+. + ++.+ .+++.|+ .||+|.
T Consensus 265 ~~~~i~~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~-~-~~~~-~~~l~g~-~GT~Iv 331 (332)
T 4axs_A 265 TQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIA-D-LSKV-EDALKGL-SGTKII 331 (332)
T ss_dssp TCEECSSCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEE-C-STTH-HHHTTTS-SSEEEB
T ss_pred chhhcccCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEEC-C-HHHH-HHHHCCC-CCcEEe
Confidence 7 58999999999999988765 69999999999999999887777774 2 3344 6777764 899995
No 27
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=100.00 E-value=9.7e-37 Score=288.13 Aligned_cols=238 Identities=16% Similarity=0.186 Sum_probs=185.8
Q ss_pred HHHHHhhhHHHHh--hcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcccc
Q 018330 78 VDILSESLPFIQK--FRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFR 155 (358)
Q Consensus 78 ~~~l~~a~pyi~~--~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~ 155 (358)
-..|.+++||+++ ++.+++|||+||+++++++ ++.+.+++++|+.+++. +++|||||||++++. +.++++..
T Consensus 19 ~~~~~~~~~~~~~~~~m~~~iVIKlGGs~l~~~~-~~~~~~la~~I~~l~~~-~~vVlVhGGg~~~~~-~~~~~~~~--- 92 (270)
T 2ogx_B 19 DPQLQAAAAAAADFRILPDATVIKIGGQSVIDRG-RAAVYPLVDEIVAARKN-HKLLIGTGAGTRARH-LYSIAAGL--- 92 (270)
T ss_dssp CHHHHHHHHTSCCCCSSTTEEEEEECTTTTGGGC-HHHHHHHHHHHHHHTTT-CEEEEEECCCHHHHH-HHHHHHHT---
T ss_pred chhhhhhhcccchhhhccCeEEEEechHHhCCCC-HHHHHHHHHHHHHHhcC-CcEEEEECChHHHHH-HHHHHHhc---
Confidence 4568999999977 5556999999999999843 34568899999999876 999999999997644 33433321
Q ss_pred CCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCC
Q 018330 156 DGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSG 235 (358)
Q Consensus 156 ~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G 235 (358)
|+ +...++...+..+|+.+..+.++|+++|++. ++..+.+.++.+|++|
T Consensus 93 -g~---~~~~~~~~~~~a~G~~~l~~~~~l~~~G~~~---------------------------vt~~d~~~i~~lL~~g 141 (270)
T 2ogx_B 93 -GL---PAGVLAQLGSSVADQNAAMLGQLLAKHGIPV---------------------------VGGAGLSAVPLSLAEV 141 (270)
T ss_dssp -TC---CHHHHHHHHHHHHHHHHHHHHHHHGGGTCCB---------------------------CCSSTTCHHHHHCTTC
T ss_pred -CC---ChHHHHHHHHHHHHHHHHHHHHHHHhcCCce---------------------------ecHhhHHHHHHHHhCC
Confidence 22 3444555555556766666777788888762 1122344699999999
Q ss_pred CeEEEcCC-ccC--C----CCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHh
Q 018330 236 HIPVIASV-AAD--E----FGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIE 305 (358)
Q Consensus 236 ~IPVi~gv-~~~--~----~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~ 305 (358)
.|||++|+ +++ + .|...++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.++..
T Consensus 142 ~ipVi~g~~g~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~ 221 (270)
T 2ogx_B 142 NAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGL 221 (270)
T ss_dssp CEEEEECSCTTGGGCCCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTC
T ss_pred CEEEEeCCccccccccccccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhc
Confidence 99999985 332 2 355677999999999999999999999999999999754 344 6999999999999876
Q ss_pred CC-CCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 306 DG-KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 306 ~~-~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+ .+.|||.+|+++|. .++ +++|+||+.|++| .++|+++++||+|.+
T Consensus 222 ~g~~~~ggm~~kl~aa~----~~~-~v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 222 HDSILEFPVLDLLQSAQ----HVR-EVQVVNGLVPGNL-TRALAGEHVGTIITA 269 (270)
T ss_dssp CCTTSCHHHHHHHHHCS----SCC-EEEEEETTSTTHH-HHHHTTCCCSEEEEC
T ss_pred CCCcccHHHHHHHHHhh----cCC-cEEEEeCCCchHH-HHHHcCCCCCeEecC
Confidence 54 56799999999875 345 5999999999998 789999999999964
No 28
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=100.00 E-value=8.6e-36 Score=272.87 Aligned_cols=212 Identities=16% Similarity=0.218 Sum_probs=171.2
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhH---HHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINF---WLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~---~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
+++||||||++++++ +..+.+++++|+.+++ |+++|||||||++++. +++++|++ +.+++.+.
T Consensus 1 ~~iViK~GGs~l~~~--~~~~~~~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~~g~~-----------~~~l~~~~ 66 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNE--SEKIREFAKTIESVAQ-QNQVFVVVGGGKLAREYIKSARELGAS-----------ETFCDYIG 66 (219)
T ss_dssp CEEEEEECSSTTTTC--HHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHHTTCC-----------HHHHHHHH
T ss_pred CeEEEEeChhhhCCh--HHHHHHHHHHHHHHcC-CCEEEEEECcchHhcchHHHHHHcCCC-----------ccchHHHH
Confidence 579999999999984 3455789999999988 9999999999999998 56777764 34566666
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCC
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQ 250 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~ 250 (358)
++ .+.+|..+++.+.++++ .+ ..++.+.++.+|++|.|||++| |.
T Consensus 67 ~~-~~~~~~~l~~~~~~~~~---------~~-------------------~~~~~~~i~~ll~~g~ipVi~~------g~ 111 (219)
T 2ij9_A 67 IA-ATRLNAMLLISAIPSAA---------KK-------------------VPVDFMEAEELSKLYRVVVMGG------TF 111 (219)
T ss_dssp HH-HHHHHHHHHHHHCTTBC---------SS-------------------CCSSHHHHHHHHTTCSEEEECC------CS
T ss_pred HH-HHHHHHHHHHHHHHHhc---------CC-------------------CcCCHHHHHHHHHCCCEEEEeC------CC
Confidence 65 66788887765544331 00 1246788999999999999999 45
Q ss_pred ccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhC-CCCCCCcHHHHHHHHHHHHc
Q 018330 251 SYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIED-GKVGGGMIPKVNCCIRSLAQ 326 (358)
Q Consensus 251 ~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~-~~vtGGM~~Kv~aA~~al~~ 326 (358)
.++ |+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.+++.. +..+|||.+|..+|.++++.
T Consensus 112 ~~~-~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~~~a~~~~~~ 190 (219)
T 2ij9_A 112 PGH-TTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIER 190 (219)
T ss_dssp SSS-CTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHH
T ss_pred CCC-CchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchHHHHHHHHHH
Confidence 566 99999999999999999999999999999754 344 79999999999999776 56689988888888888876
Q ss_pred CCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 327 GVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 327 Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+..+++|+|| .|+.| .++|+++++||+|.
T Consensus 191 ~~~~v~I~~g-~~~~l-~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 191 SKIKTYVILG-TPENI-MKAVKGEAVGTVIA 219 (219)
T ss_dssp HTCCEEEEEC-CHHHH-HHHHTTCCCSEEEC
T ss_pred CCCeEEEEEC-CHhHH-HHHHcCCCCCeEeC
Confidence 5555999999 99998 68999999999985
No 29
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=100.00 E-value=3e-36 Score=280.73 Aligned_cols=216 Identities=19% Similarity=0.263 Sum_probs=172.3
Q ss_pred CeEEEEECCcccCCCC-hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhH---HHHHcCCCccccCCcccCCHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQ-KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINF---WLKRFGIEPVFRDGLRVTDANTMEIV 169 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~-~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~---~l~~~gi~~~~~~g~rvt~~~~~~~v 169 (358)
|++||||||+++++++ .++.+..++++|+.+++ |+++|||||||++++. ++++++++ ..+++.+
T Consensus 20 k~iViKlGGs~l~~~~~~~~~i~~~~~~i~~l~~-g~~vViV~GgG~~~~~~~~~~~~~gl~-----------~~~~~~~ 87 (244)
T 2brx_A 20 MRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSS-----------ETFKDFI 87 (244)
T ss_dssp CEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTCC-----------HHHHHHH
T ss_pred cEEEEEechhhcCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECccHHHhchHHHHHHcCCC-----------cccHHHH
Confidence 7999999999999531 04556889999999988 9999999999999988 45665553 3456666
Q ss_pred HHHHhhhhHHHHHH-HHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCC
Q 018330 170 SMVLVGRVNKSLVS-LINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEF 248 (358)
Q Consensus 170 ~~vl~g~ln~~lv~-~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~ 248 (358)
.++ ...+|..+++ .|.++|++. ..++.+.+..+|++|.|||++|
T Consensus 88 ~~~-~~~~~~~l~~~~l~~~g~~~----------------------------~~~~~~~i~~lL~~g~IpVi~g------ 132 (244)
T 2brx_A 88 GIQ-ITRANAMLLIAALREKAYPV----------------------------VVEDFWEAWKAVQLKKIPVMGG------ 132 (244)
T ss_dssp HHH-HHHHHHHHHHHHHGGGBCSS----------------------------CBCSHHHHHHHHHTTCBCEECC------
T ss_pred HHH-HHHHHHHHHHHHHHHcCCCC----------------------------CcCCHHHHHHHHhCCCEEEEcC------
Confidence 665 5678888764 888888542 1236778899999999999999
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhC-CCCCCCcHHHHHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIED-GKVGGGMIPKVNCCIRSL 324 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~-~~vtGGM~~Kv~aA~~al 324 (358)
|..++ |+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++|+++|+.+++.. +..+|||.+|..+|.+++
T Consensus 133 g~~~~-~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~A~~~~ 211 (244)
T 2brx_A 133 THPGH-TTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKII 211 (244)
T ss_dssp CSTTC-CHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHH
T ss_pred CCCCC-CchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHHHHHHH
Confidence 44455 99999999999999999999999999999743 244 69999999999999776 567899999999999888
Q ss_pred HcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 325 AQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 325 ~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+.+..+++|+||+.|+.| .++|+++++||+|.+
T Consensus 212 ~~~~~~v~I~ng~~~~~l-~~~l~g~~~GT~i~~ 244 (244)
T 2brx_A 212 ARSGIKTIVIGKEDAKDL-FRVIKGDHNGTTIEP 244 (244)
T ss_dssp HHHTCCEEEECHHHHTCH-HHHHTTCSSSEEECC
T ss_pred HHCCCeEEEEeCCChhHH-HHHHcCCCCceEecC
Confidence 865555999999999998 789999999999975
No 30
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=100.00 E-value=2.3e-34 Score=267.93 Aligned_cols=225 Identities=20% Similarity=0.224 Sum_probs=177.8
Q ss_pred cCCeEEEEECCcccCCCCh----hHHHHHHHHHHHHhHhCCCeEEEEECChHHH-hHHHHHcCCCccccCCcccCCHHHH
Q 018330 92 RGKTIVVKYGGAAMKPNQK----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEI-NFWLKRFGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i-~~~l~~~gi~~~~~~g~rvt~~~~~ 166 (358)
+.+++|||+||++|++++. +..+++++++|+.++..|+++|||||||+.. +..+.++|++. ...
T Consensus 8 ~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~~~~g~~~-----------~~~ 76 (243)
T 3ek6_A 8 SYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDR-----------VTG 76 (243)
T ss_dssp SCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTTSCSSSCH-----------HHH
T ss_pred cCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCCCC-----------CCH
Confidence 3589999999999998641 3566899999999999999999999998743 33333444432 112
Q ss_pred HHHHHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCcc
Q 018330 167 EIVSMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAA 245 (358)
Q Consensus 167 ~~v~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~ 245 (358)
+.+.|. ..++|.. +.++|+++|++++++++.+...+ ...++.+.+..+|++|.|||++|.
T Consensus 77 d~~g~l-~t~~N~~~l~~al~~~G~~a~~~~~~~~~~v----------------~~~~~~~~~~~lL~~g~IpVv~~~-- 137 (243)
T 3ek6_A 77 DHMGML-ATVINALAMQDALEKLGAKVRVMSAIKINDV----------------CEDFIRRRAIRHLEKGRIAIFAAG-- 137 (243)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHTTCCEEEEESSCBTTT----------------BEECCHHHHHHHHHTTCEEEEEST--
T ss_pred HHHHHH-HHHHHHHHHHHHHHHcCCCeEEechhhcCcc----------------cCcCCHHHHHHHHHCCcEEEEECC--
Confidence 223333 5689987 88899999999999997653211 023467889999999999999992
Q ss_pred CCCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 018330 246 DEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIR 322 (358)
Q Consensus 246 ~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~ 322 (358)
.|. .++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.+. + .+.| |+.+|..
T Consensus 138 --~g~-~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g--~~~~--~~~a~~~ 207 (243)
T 3ek6_A 138 --TGN-PFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQ---G--LEVM--DTAAFAL 207 (243)
T ss_dssp --TSS-TTCCHHHHHHHHHHHHTCSEEEEECSSSSCBSSCGGGCTTCCBCSEECHHHHHHH---T--CCSS--CHHHHHH
T ss_pred --CCC-CcCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceecccccHHHHHhC---C--chhH--HHHHHHH
Confidence 343 35899999999999999999999999999999865 354 69999999987663 2 2455 6789999
Q ss_pred HHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 323 SLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 323 al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+.+.|++ ++|+||+.|++| .++|+|+++||+|.+
T Consensus 208 a~~~gv~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 208 ARDSDLP-LRIFGMSEPGVL-LRILHGAQIGTLVQG 241 (243)
T ss_dssp HHHTTCC-EEEECCCSTTHH-HHHHTTCCCSEEECC
T ss_pred HHHCCCe-EEEEcCCCccHH-HHHHCCCCCceEEee
Confidence 9999998 999999999997 589999999999975
No 31
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=100.00 E-value=4.4e-34 Score=267.20 Aligned_cols=224 Identities=17% Similarity=0.192 Sum_probs=178.7
Q ss_pred CCeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHH-HHHcCCCccccCCcccCCHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW-LKRFGIEPVFRDGLRVTDANTME 167 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~-l~~~gi~~~~~~g~rvt~~~~~~ 167 (358)
.+++||||||+++++++ .++.+..++++|+.++..|+++|||||||+++... ++++|+++.+ .+.+
T Consensus 7 ~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~~~~lg~~~~~--------~~~~- 77 (252)
T 1z9d_A 7 YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQ--------ADYT- 77 (252)
T ss_dssp CSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHH--------HHHH-
T ss_pred CCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccchHHHcCCCCCc--------hHHH-
Confidence 47999999999999632 13456889999999999999999999999876554 6777876521 1122
Q ss_pred HHHHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccC
Q 018330 168 IVSMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAAD 246 (358)
Q Consensus 168 ~v~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~ 246 (358)
+++.+.+|.. ++++|.++|++++++++.+...+. | ..++.+. ..+|+.|.|||++|.
T Consensus 78 ---~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~~--------~-------~~~~~~~-~~lL~~g~IpVi~~~--- 135 (252)
T 1z9d_A 78 ---GMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVA--------E-------PYIRGRA-LRHLEKNRIVVFGAG--- 135 (252)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTTB--------E-------ECCHHHH-HHHHHTTCEEEEEST---
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCCeEEEecccccccc--------C-------cchHHHH-HHHHhCCCEEEEeCC---
Confidence 2345678887 888999999999999875442110 0 1234444 899999999999982
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEee-cccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILLT-DVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIR 322 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lT-DV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~ 322 (358)
.| ..++|+|++|+++|.+|+||+|+|+| ||||||+++| +|+ ++|++|+++|+.+. ..++| |+++|..
T Consensus 136 -~g-~~~~~~D~~Aa~lA~~l~Ad~LiilT~DVdGvy~~dP~~~~~a~~i~~i~~~e~~~~-----~~~~m--k~~aa~~ 206 (252)
T 1z9d_A 136 -IG-SPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKR-----GLKIM--DATASTL 206 (252)
T ss_dssp -TS-CTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHTT-----TCCCS--CHHHHHH
T ss_pred -cC-CCCCChHHHHHHHHHhcCCCEEEEecCCCCeeeCCCCCCCCCCeEeeEecHHHHHhc-----ccccc--CHHHHHH
Confidence 23 35899999999999999999999999 9999999854 344 79999999988763 23788 8889999
Q ss_pred HHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 323 SLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 323 al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+.+.|++ ++|+||+.|+.| .++|+++++||+|.+
T Consensus 207 a~~~gv~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 240 (252)
T 1z9d_A 207 SMDNDID-LVVFNMNEAGNI-QRVVFGEHIGTTVSN 240 (252)
T ss_dssp HHHTTCE-EEEEETTSTTHH-HHHHTTCCCSEEEEC
T ss_pred HHHcCCe-EEEEeCCCchHH-HHHHcCCCCceEEec
Confidence 9999998 999999999997 789999999999964
No 32
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=100.00 E-value=9.6e-34 Score=262.45 Aligned_cols=224 Identities=17% Similarity=0.230 Sum_probs=177.7
Q ss_pred CCeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHH-HHHcCCCccccCCcccCCHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW-LKRFGIEPVFRDGLRVTDANTME 167 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~-l~~~gi~~~~~~g~rvt~~~~~~ 167 (358)
.+++||||||+++++++ ..+.+.+++++|+.+++.|+++|||||||+++... +++++++.. +.+
T Consensus 7 ~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~GgG~~~~g~~~~~~~~~~~-----------~~~ 75 (239)
T 1ybd_A 7 YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRA-----------TAD 75 (239)
T ss_dssp CSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTSCHH-----------HHH
T ss_pred CCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhchhHHHcCCCCc-----------cHH
Confidence 47999999999999742 13456789999999999999999999999987766 577777642 122
Q ss_pred HHHHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccC
Q 018330 168 IVSMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAAD 246 (358)
Q Consensus 168 ~v~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~ 246 (358)
.+.+ +...+|.. +.++|.++|+++.++++.+...+. .+ .++.+.+ .+|+.|.|||+++.
T Consensus 76 ~~~~-~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~-------~~--------~~~~~~~-~ll~~g~ipVv~g~--- 135 (239)
T 1ybd_A 76 YMGM-MATVMNALALKDAFETLGIKARVQSALSMQQIA-------ET--------YARPKAI-QYLEEGKVVIFAAG--- 135 (239)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSC-------EE--------CCHHHHH-HHHHTTCEEEEEST---
T ss_pred HHHH-HHHHHHHHHHHHHHHHcCCCeEEEeeecccccc-------cc--------hhHHHHH-HHHhCCcEEEEECC---
Confidence 2333 24567887 588999999999999876542210 01 2345666 78999999999952
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
.| ..++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.++ ..++| |+++|..+
T Consensus 136 -~g-~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~-----g~~~m--~~~a~~~a 206 (239)
T 1ybd_A 136 -TG-NPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK-----NLKVM--DATAFALC 206 (239)
T ss_dssp -TS-STTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT-----TCCSS--CHHHHHHH
T ss_pred -cc-CCCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh-----ccccc--CHHHHHHH
Confidence 33 346899999999999999999999999999999754 355 59999999998875 23788 66788999
Q ss_pred HHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 324 LAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+.|++ ++|+||+.|+.| .++|+++++||+|.+
T Consensus 207 ~~~gv~-v~I~~~~~~~~l-~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 207 RERKLN-IVVFGIAKEGSL-KRVITGEDEGTLVHC 239 (239)
T ss_dssp HHTTCC-EEEECTTSTTHH-HHHHHTCSCSEEEEC
T ss_pred HHcCCc-EEEEeCCChhHH-HHHHcCCCCCeEEcC
Confidence 999999 999999999997 589999999999975
No 33
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=100.00 E-value=3.8e-34 Score=268.32 Aligned_cols=230 Identities=15% Similarity=0.200 Sum_probs=175.9
Q ss_pred hHHHHhhc-CCeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHH-HHHcCCCccccCCc
Q 018330 85 LPFIQKFR-GKTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW-LKRFGIEPVFRDGL 158 (358)
Q Consensus 85 ~pyi~~~~-~k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~-l~~~gi~~~~~~g~ 158 (358)
.||...++ .|++||||||+++++++ .++.+..++++|+.|+ .|+++|||||||+++... ++++++++..
T Consensus 15 ~~~~~~~~~~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~-~g~~vVlVhGgG~~~~~~~~~~~g~~~~~---- 89 (256)
T 2va1_A 15 VPRGSHMMRKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKIS-KKYIVSIVLGGGNIWRGSIAKELDMDRNL---- 89 (256)
T ss_dssp --------CCSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHT-TTSEEEEEECCTTTCCHHHHHHTTCCHHH----
T ss_pred cchhhhhhhcCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEECCcHHhccchHHHcCCCCCc----
Confidence 34544443 47999999999999752 1345688999999998 899999999999998765 7788876521
Q ss_pred ccCCHHHHHHHHHHHhhhhHHHH-HHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCe
Q 018330 159 RVTDANTMEIVSMVLVGRVNKSL-VSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHI 237 (358)
Q Consensus 159 rvt~~~~~~~v~~vl~g~ln~~l-v~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~I 237 (358)
...+ +++.+.+|..+ +++|.++|++++++++.+.. ++. . ..++.+. ..+|+.|.|
T Consensus 90 ----~~~~----~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~~-----------~~~---~-~~~~~~~-~~lL~~g~I 145 (256)
T 2va1_A 90 ----ADNM----GMMATIINGLALENALNHLNVNTIVLSAIKCD-----------KLV---H-ESSANNI-KKAIEKEQV 145 (256)
T ss_dssp ----HHHH----HHHHHHHHHHHHHHHHHTTTCCEEEEESSCCT-----------TTC---E-ECCHHHH-HHHHHTTCE
T ss_pred ----hhHH----HHHHHHHHHHHHHHHHHHcCCCeEEEeeeecc-----------ccc---c-hhhHHHH-HHHHhCCcE
Confidence 1112 34456788877 89999999999888865321 111 0 1234555 789999999
Q ss_pred EEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeec-ccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCc
Q 018330 238 PVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTD-VAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGM 313 (358)
Q Consensus 238 PVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTD-V~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM 313 (358)
||++| .+|. .++|+|++|+++|.+|+||+|+|+|| |||||+++| +|+ ++|++|+++|+.++ + .|+|
T Consensus 146 pVi~~----~~g~-~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~---~--~~~m 215 (256)
T 2va1_A 146 MIFVA----GTGF-PYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---N--LKVM 215 (256)
T ss_dssp EEEES----TTSS-SSCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHHHH---T--CCSS
T ss_pred EEEEC----CCCC-CCCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHHHh---c--cCCc
Confidence 99999 2343 35789999999999999999999999 999999754 344 69999999999887 2 3889
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 314 IPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 314 ~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
|+++|..+.+.|++ ++|+||+.|++| .++|+++++||+|.
T Consensus 216 --k~~aa~~a~~~gv~-v~I~~g~~~~~l-~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 216 --DATALALCQENNIN-LLVFNIDKPNAI-VDVLEKKNKYTIVS 255 (256)
T ss_dssp --CHHHHHHHHHTTCE-EEEEESSSTTHH-HHHHTTCSCEEEEE
T ss_pred --cHHHHHHHHHCCCe-EEEEeCCCchHH-HHHHcCCCCeEEEe
Confidence 99999999999998 999999999998 58999999999996
No 34
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=100.00 E-value=1.7e-33 Score=262.42 Aligned_cols=223 Identities=17% Similarity=0.189 Sum_probs=174.6
Q ss_pred CCeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHH-HHHcCCCccccCCcccCCHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW-LKRFGIEPVFRDGLRVTDANTME 167 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~-l~~~gi~~~~~~g~rvt~~~~~~ 167 (358)
.+++||||||+++++++ .++.+.+++++|+.+++.|+++|||||||+++... +.+++++.. ..+
T Consensus 8 ~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~~g~~~~-----------~~d 76 (247)
T 2a1f_A 8 YKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRV-----------VGD 76 (247)
T ss_dssp CSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHH-----------HHH
T ss_pred ccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHHcCCCCC-----------cHH
Confidence 47999999999999631 13456889999999998999999999999887555 677777642 122
Q ss_pred HHHHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccC
Q 018330 168 IVSMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAAD 246 (358)
Q Consensus 168 ~v~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~ 246 (358)
.+. ++.+.+|.. ++++|.++|+++.++++.+...+ +. ..++.+ +..+|+.|.|||++|.
T Consensus 77 ~~~-~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~~---------~~------~~~~~~-~~~ll~~g~ipVi~~~--- 136 (247)
T 2a1f_A 77 HMG-MLATVMNGLAMRDSLFRADVNAKLMSAFQLNGI---------CD------TYNWSE-AIKMLREKRVVIFSAG--- 136 (247)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTT---------SE------ECCHHH-HHHHHHTTCEEEEEST---
T ss_pred HHH-HHHHHHHHHHHHHHHHHcCCCeEEecccccccc---------cc------hhhHHH-HHHHHhCCCEEEEeCC---
Confidence 222 335678887 78899999999999987654211 00 123344 4789999999999982
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
.|. .++|+|++|+.+|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.++ ..++| |+++|..+
T Consensus 137 -~g~-~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~dP~~~p~a~~i~~i~~~e~~~~-----g~~~m--~~~aa~~a 207 (247)
T 2a1f_A 137 -TGN-PFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK-----ELKVM--DLSAFTLA 207 (247)
T ss_dssp -TSC-SSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHHT-----TCCSS--CHHHHHHH
T ss_pred -cCC-CCCCcHHHHHHHHHhCCCCEEEEEeCCCcccCCCCCCCCCCeEcccCCHHHHHHc-----Ccccc--CHHHHHHH
Confidence 233 46899999999999999999999999999999754 344 79999999998875 23778 66788899
Q ss_pred HHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 324 LAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+.|++ ++|+||+.|+.| .++++|+.+||+|.
T Consensus 208 ~~~gv~-v~I~~~~~~~~l-~~~l~g~~~GT~~~ 239 (247)
T 2a1f_A 208 RDHGMP-IRVFNMGKPGAL-RQVVTGTEEGTTIC 239 (247)
T ss_dssp HHHTCC-EEEEETTSTTHH-HHHHTCSCSSEEEC
T ss_pred HHcCCc-EEEEeCCCchHH-HHHHcCCCCceEEe
Confidence 999999 999999999997 67889999999985
No 35
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=3.7e-34 Score=273.14 Aligned_cols=256 Identities=20% Similarity=0.285 Sum_probs=175.0
Q ss_pred cCCeEEEEECCcccCCC----Chh-H--HHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHH
Q 018330 92 RGKTIVVKYGGAAMKPN----QKD-N--LLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDAN 164 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k----~~~-~--l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~ 164 (358)
++|++||+|||++|..+ ..+ + .....++.|+.|.+.|+++||+||+|||++.++........ ......-+
T Consensus 4 ~~~~ivvalgGnal~~~g~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~~---~~~~~pld 80 (317)
T 3kzf_A 4 AGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAG---VSPEMPLH 80 (317)
T ss_dssp CCCEEEEECCSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTTS---SSCCCCHH
T ss_pred CCCEEEEEcChhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccc---cCCCCCcc
Confidence 45899999999999542 111 2 23567888999888999999999999999876654332210 00111222
Q ss_pred HHHHHHHHHhhh-hHHHHHHHHHHcCCe--eEeecCCCccEEEe----------ecCC-------------C------CC
Q 018330 165 TMEIVSMVLVGR-VNKSLVSLINKAGAT--AVGLSGMDGRLFTA----------RPSP-------------N------SD 212 (358)
Q Consensus 165 ~~~~v~~vl~g~-ln~~lv~~L~~~Gi~--av~lsg~d~~ll~a----------~~~~-------------~------~~ 212 (358)
.+...+|-+.|. +...|...|.+.|+. +..+- .+.++. +|.+ . .+
T Consensus 81 ~~~A~sqG~igy~l~~al~~~l~~~g~~~~v~t~i---tq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~~~~~e 157 (317)
T 3kzf_A 81 VCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCV---TQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILRE 157 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBC---CEEEECTTCGGGTSCCEECC----------------------
T ss_pred ccCchhhHHHHHHHHHHHHHHHHhcCCCCceeEEE---EEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccCCeEee
Confidence 233333333333 224566777777764 11111 111110 0000 0 00
Q ss_pred C--CCcc------cceeecCHHHHHHHHhCCCeEEEc-----CCccC---CCCCccccChHHHHHHHHHHcCCCeEEEee
Q 018330 213 K--LGFV------GEVARVDPTVIEPLVNSGHIPVIA-----SVAAD---EFGQSYNINADTVAGELAAALGAEKLILLT 276 (358)
Q Consensus 213 d--~g~~------g~v~~i~~~~I~~lL~~G~IPVi~-----gv~~~---~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lT 276 (358)
| .+|. -.++.++.+.|+.||++|+|||++ |+..+ .+|..+|+|+|++|+.+|.+|+||+|+|+|
T Consensus 158 d~grg~RrvV~sP~P~~iVe~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLT 237 (317)
T 3kzf_A 158 DAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILT 237 (317)
T ss_dssp ----CCCCEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECC
T ss_pred cCCCCeeeecCCCCCcceECHHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEec
Confidence 0 0110 113468999999999999998887 44332 346778999999999999999999999999
Q ss_pred ccccccccccccC-cccccccHHHHHHHHhCCC-CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCce
Q 018330 277 DVAGILENREDPM-SLVKEIDIKGVKKMIEDGK-VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGT 354 (358)
Q Consensus 277 DV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~-vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT 354 (358)
||||||+++.+|+ ++|++++.+|+++++..+. .+|||.+|+++|+++++.|+.++||++++ . +.++|+|+ .||
T Consensus 238 DVdGVy~dp~~p~a~~I~~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~~---~-l~~~l~G~-~GT 312 (317)
T 3kzf_A 238 DVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLS---T-AVDALNGK-CGT 312 (317)
T ss_dssp SSSSCEESSSCSSCEECCEEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCGG---G-HHHHHTTS-SSE
T ss_pred CCCeeeCCCCCCCCeECcCcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcchH---H-HHHHHCCC-CCe
Confidence 9999999766776 6999999999999987665 46999999999999999888889999963 3 46788887 899
Q ss_pred EEcC
Q 018330 355 MITG 358 (358)
Q Consensus 355 ~I~~ 358 (358)
+|.+
T Consensus 313 ~I~~ 316 (317)
T 3kzf_A 313 RIIK 316 (317)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9974
No 36
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=100.00 E-value=1.1e-32 Score=258.25 Aligned_cols=224 Identities=15% Similarity=0.225 Sum_probs=173.6
Q ss_pred cCCeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHH-HHHcCCCccccCCcccCCHHHH
Q 018330 92 RGKTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW-LKRFGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~-l~~~gi~~~~~~g~rvt~~~~~ 166 (358)
+++++||||||+++++++ .++.+.+++++|+.+++.|+++|||||||+++... +++++++.. +.+.+
T Consensus 11 ~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~~~~~~~~~g~~~~--------~~~~~ 82 (255)
T 2jjx_A 11 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRV--------EADNI 82 (255)
T ss_dssp BCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHTTCCHH--------HHHHH
T ss_pred cCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHHhhhHHHHcCCCCC--------ChHHH
Confidence 468999999999999741 13455889999999988999999999999987544 677777631 11223
Q ss_pred HHHHHHHhhhhHHH-HHHHHHH-cCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCc
Q 018330 167 EIVSMVLVGRVNKS-LVSLINK-AGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVA 244 (358)
Q Consensus 167 ~~v~~vl~g~ln~~-lv~~L~~-~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~ 244 (358)
+ ++...+|.. +++.|++ +|+++.++++.+...+ .+ .++...+..+|+.|.|||++| +
T Consensus 83 ~----~~~~~~~~~ll~~~l~~~~Gi~a~~l~~~~~~~v--------------~~--~~~~~~~~~lL~~g~IpVi~g-g 141 (255)
T 2jjx_A 83 G----TLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAV--------------AE--PYIRLRAVHHLDNGYIVIFGG-G 141 (255)
T ss_dssp H----HHHHHHHHHHHHHHHHHHCSSCEEEEESSCCCSS--------------SE--ECCHHHHHHHHHTTCEEEEES-T
T ss_pred h----HHHHHHHHHHHHHHHHhhcCCceEEecHHHcCcc--------------cC--cccHHHHHHHHhCCcEEEEeC-C
Confidence 2 234578887 7889999 9999998887554321 11 234444558999999999998 2
Q ss_pred cCCCCCccccChHHHHHHHHHHcCCCeEEEee-cccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHH
Q 018330 245 ADEFGQSYNINADTVAGELAAALGAEKLILLT-DVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCC 320 (358)
Q Consensus 245 ~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lT-DV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA 320 (358)
+|.. ++++|++|+.+|.+|+||+|+|+| ||||||+++| +|+ ++|++|+++|+.++ .+|+|.+ +|
T Consensus 142 ---~g~~-~vttD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~-----G~~~m~~---~a 209 (255)
T 2jjx_A 142 ---NGQP-FVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ-----NIQVMDQ---AA 209 (255)
T ss_dssp ---TSCS-SCCSHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT-----TCCSSCH---HH
T ss_pred ---CCCC-ccchHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc-----CCccCHH---HH
Confidence 3443 578999999999999999999999 9999999854 344 79999999888875 3488975 35
Q ss_pred HHHHH-cCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 321 IRSLA-QGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 321 ~~al~-~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.++++ .|++ ++|+||+.|++| .++|++++.||+|.+
T Consensus 210 ~~~a~~~gi~-v~I~~~~~~~~l-~~~l~g~~~GT~I~~ 246 (255)
T 2jjx_A 210 LLLARDYNLP-AHVFNFDEPGVM-RRICLGEHVGTLIND 246 (255)
T ss_dssp HHHHHHHTCC-EEEEETTSTTHH-HHHHBTCCCSEEEES
T ss_pred HHHHHHcCCe-EEEEeCCCchHH-HHHhcCCCCceEEec
Confidence 55554 7998 999999999997 567799899999964
No 37
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.5e-33 Score=265.61 Aligned_cols=223 Identities=17% Similarity=0.289 Sum_probs=171.2
Q ss_pred CCeEEEEECCcccCCCC---hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHH-HHcCCCccccCCcccCCHHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQ---KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWL-KRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~---~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l-~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
.|++|||+||++|++++ .+..+.+++++|+.+++.|+++|||||||..+..+. ..+|+ +.+....+.
T Consensus 50 ~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~~~gl--------~~~~~d~~g- 120 (281)
T 3nwy_A 50 YSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGM--------ERTRSDYMG- 120 (281)
T ss_dssp CSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTTTTTC--------CHHHHHHHH-
T ss_pred CcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHHhcCC--------CccchhHHH-
Confidence 48999999999999754 245668899999999999999999999887654321 11222 222222233
Q ss_pred HHHHHhhhhHH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCC
Q 018330 169 VSMVLVGRVNK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247 (358)
Q Consensus 169 v~~vl~g~ln~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~ 247 (358)
+ +...+|. .|.++|+++|++++++++.+.+.+. + ..++.+.+ .+|++|.|||+++.
T Consensus 121 --~-lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~~~~-~--------------~~~~~~~l-~lL~~g~IpVv~g~---- 177 (281)
T 3nwy_A 121 --M-LGTVMNSLALQDFLEKEGIVTRVQTAITMGQVA-E--------------PYLPLRAV-RHLEKGRVVIFGAG---- 177 (281)
T ss_dssp --H-HHHHHHHHHHHHHHHHTTCCEEEEESSCCGGGS-E--------------ECCHHHHH-HHHHTTCEEEEEST----
T ss_pred --H-HHHHHHHHHHHHHHHHcCCCEEEEecccccccc-c--------------ccchHHHH-HHHHcCCeEEEECC----
Confidence 3 2456777 6778999999999888876544332 1 22345666 78999999999982
Q ss_pred CCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 018330 248 FGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSL 324 (358)
Q Consensus 248 ~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al 324 (358)
+|. .++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.+ .|+|..|+.+|..+.
T Consensus 178 ~g~-~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~-------~g~~v~k~~Aa~~a~ 249 (281)
T 3nwy_A 178 MGL-PYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLD-------RGLRVADATAFSLCM 249 (281)
T ss_dssp TSS-TTCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-----CCCCBCSEECHHHHHT-------TTCCSSCHHHHHHHH
T ss_pred CCC-CCCCHHHHHHHHHHHcCCCEEEEeeccCccccCCCCcCCCCeEcccccHHHHHH-------cCCCcHHHHHHHHHH
Confidence 343 45899999999999999999999999999999854 455 6999999988643 257888999999999
Q ss_pred HcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 325 AQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 325 ~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.|++ ++|+||+.|++| .++|+|+++||+|.
T Consensus 250 ~~Gi~-v~I~~g~~p~~l-~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 250 DNGMP-ILVFNLLTDGNI-ARAVRGEKIGTLVT 280 (281)
T ss_dssp TTTCC-EEEEETTSTTHH-HHHHHTCCCSEEEC
T ss_pred HCCCe-EEEecCCCchHH-HHHHcCCCCceEEe
Confidence 99998 999999999997 58999999999985
No 38
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=100.00 E-value=6.5e-32 Score=269.96 Aligned_cols=230 Identities=20% Similarity=0.294 Sum_probs=167.7
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEEC-ChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHG-GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMV 172 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhG-gg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~v 172 (358)
+++|+||||+++.+ ++.+.+++++|+.+++.|+++||||| +|+.++.+++..+.... +. +...++.+..+
T Consensus 2 ~~iViK~GGssl~~---~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~-----~~-~~~~~d~~~a~ 72 (421)
T 3ab4_A 2 ALVVQKYGGSSLES---AERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNP-----VP-PAREMDMLLTA 72 (421)
T ss_dssp CEEEEEECSGGGSS---HHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCS-----SC-CHHHHHHHHHH
T ss_pred CeEEEEEChhHhCC---HHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhcc-----CC-CHHHHHHHHHH
Confidence 68999999999998 76678999999999989999999997 68888888776542211 22 35566666543
Q ss_pred Hhhh-hHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccCCC-
Q 018330 173 LVGR-VNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AADEF- 248 (358)
Q Consensus 173 l~g~-ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~~~- 248 (358)
|+ +|.. +...|+++|+++.++++.+..++++++.. .+++..++.+.|+.+|+.|.|||++|+ +.+++
T Consensus 73 --Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~-------~~~v~~~~~~~i~~~l~~g~ipVv~g~~g~~~~~ 143 (421)
T 3ab4_A 73 --GERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHG-------NARIVDVTPGRVREALDEGKICIVAGFQGVNKET 143 (421)
T ss_dssp --HHHHHHHHHHHHHHHTTCCEEECCCC------------------------CCHHHHHHHHHTTCEEEC----------
T ss_pred --HHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCC-------CeeechhhHHHHHHHHhCCCEEEEeCCcCcCCCC
Confidence 54 7774 88899999999999999888777766532 377888899999999999999999996 78888
Q ss_pred CCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 018330 249 GQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIR 322 (358)
Q Consensus 249 G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~ 322 (358)
|+++++ ++|++|+.+|.+|+||+|+++|||||||+++|. |+ ++|++|+++|+.+++..| .+..|.+++..
T Consensus 144 g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~G----a~v~~~~a~~~ 219 (421)
T 3ab4_A 144 RDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVG----SKILVLRSVEY 219 (421)
T ss_dssp --------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTT----CCSSCHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcC----CcCchHHHHHH
Confidence 998888 999999999999999999999999999998542 33 799999999999998753 35567779999
Q ss_pred HHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 323 SLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 323 al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.+.|++ ++|.|+..| +.||+|.
T Consensus 220 a~~~gi~-v~I~n~~~~-----------~~GT~I~ 242 (421)
T 3ab4_A 220 ARAFNVP-LRVRSSYSN-----------DPGTLIA 242 (421)
T ss_dssp HHHTTCC-EEEEESSSC-----------CCCEEEC
T ss_pred HHHcCCC-EEEecCcCC-----------CCCeEEE
Confidence 9999999 999998775 6899886
No 39
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=99.96 E-value=1.4e-28 Score=255.43 Aligned_cols=230 Identities=20% Similarity=0.256 Sum_probs=175.6
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMV 172 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~v 172 (358)
+++|+||||+++.+ ++.+.+++++|+.+++.|+++|||||| |..++.++.... .+. .|. +...++.+..
T Consensus 2 ~~iViK~GGssl~~---~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~---~~~--~~~-~~~~~d~l~s- 71 (600)
T 3l76_A 2 ALIVQKFGGTSVGT---VERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQ---QIS--PNP-CRREMDMLLS- 71 (600)
T ss_dssp CEEEEEECSGGGSS---HHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHH---HHC--SSC-CHHHHHHHHH-
T ss_pred ceEEEEeCCCCcCC---HHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHH---hhc--cCC-CHHHHHHHHH-
Confidence 58999999999999 777789999999999899999999999 888777664211 010 122 2344543322
Q ss_pred Hhhh-hHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccCCCC
Q 018330 173 LVGR-VNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAADEFG 249 (358)
Q Consensus 173 l~g~-ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G 249 (358)
.|+ +|.. +..+|+++|++++++++.+..+++..... .+++..++.+.|+.+|+.|.|||++| .+.+++|
T Consensus 72 -~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~-------~~~~~~~~~~~i~~ll~~g~IpVv~Gf~g~~~~g 143 (600)
T 3l76_A 72 -TGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHS-------RARILEIRPDRLEHHLREGKVVVVAGFQGISSVE 143 (600)
T ss_dssp -HHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC--------------CCEEEECCHHHHHTTTCEEEEECEEEC----
T ss_pred -HhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCC-------CceeccccHHHHHHHHhCCCEEEEECCeecCCCC
Confidence 254 6665 56799999999999999888887755322 23456667789999999999999998 5778888
Q ss_pred --Ccccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHH
Q 018330 250 --QSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCI 321 (358)
Q Consensus 250 --~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~ 321 (358)
.+.++ ++|++|+.+|.+|+||+|+++|||||||+++|. |+ ++|++++++|+.+++.. .+|+|.| +++.
T Consensus 144 ~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~--G~~vm~p--~a~~ 219 (600)
T 3l76_A 144 HLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASL--GAKVLHP--RAVE 219 (600)
T ss_dssp CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGG--GTTTCCH--HHHH
T ss_pred CEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhC--CCCccHH--HHHH
Confidence 44443 599999999999999999999999999998652 43 69999999999998764 4599999 6888
Q ss_pred HHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 322 RSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 322 ~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+.+.|++ ++|.|+..+ ..||+|.
T Consensus 220 ~a~~~gip-v~I~n~~~~-----------~~GT~I~ 243 (600)
T 3l76_A 220 IARNYGIP-LVVRSSWSD-----------EPGTKVV 243 (600)
T ss_dssp HHHHHTCC-EEEEETTCC-----------SCCEEEE
T ss_pred HHHHCCCe-EEEEECCCC-----------CCCeEEe
Confidence 88999999 999997642 4688875
No 40
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=99.95 E-value=4e-27 Score=238.50 Aligned_cols=238 Identities=18% Similarity=0.231 Sum_probs=181.1
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCC-eEEEEECC-hHHHhHHHHHcC------CCccc-----------
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGL-RPVLVHGG-GPEINFWLKRFG------IEPVF----------- 154 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~-~vVLVhGg-g~~i~~~l~~~g------i~~~~----------- 154 (358)
+++|.||||+++.+ .+.+..+++-|... ..|+ ++|+|.++ |...+.++.... .+..+
T Consensus 1 ~~~V~KFGGtSv~~---~~~i~~va~ii~~~-~~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (473)
T 3c1m_A 1 MTTVMKFGGTSVGS---GERIRHVAKIVTKR-KKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKH 76 (473)
T ss_dssp -CEEEEECTTTTSS---HHHHHHHHHHHHHH-HTTCSCEEEEECCSTTHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcccCC---HHHHHHHHHHHHHh-hcCCCCEEEEEcCChhhHHHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 36899999999999 65556777766554 5788 99999999 444444432110 00000
Q ss_pred ---cCCc-------------------------------ccCCHHHHHHHHHHHhhhhHHHH-HHHHHHcCCeeEeecCCC
Q 018330 155 ---RDGL-------------------------------RVTDANTMEIVSMVLVGRVNKSL-VSLINKAGATAVGLSGMD 199 (358)
Q Consensus 155 ---~~g~-------------------------------rvt~~~~~~~v~~vl~g~ln~~l-v~~L~~~Gi~av~lsg~d 199 (358)
.+.+ +..++.+++.+.+. ...+|..+ +..|+++|++++++++.+
T Consensus 77 ~~~~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~-ge~~s~~l~~~~L~~~G~~a~~l~~~~ 155 (473)
T 3c1m_A 77 YKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSF-GERLSSPILSGAIRDLGEKSIALEGGE 155 (473)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCeEEEEchh
Confidence 0000 00123345555554 45667654 689999999999999999
Q ss_pred ccEEEeecCCCCCCCCcccce-eecCHHHHHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEE
Q 018330 200 GRLFTARPSPNSDKLGFVGEV-ARVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLIL 274 (358)
Q Consensus 200 ~~ll~a~~~~~~~d~g~~g~v-~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~ 274 (358)
+++++... |++ +++ ..++.+.|+.+|+.|+|||++| ++.+++|+++++ |+|++|+.+|.+|+|++|++
T Consensus 156 ~~i~t~~~------~~~-~~~~~~~~~~~i~~ll~~g~ipVv~G~~g~~~~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~i 228 (473)
T 3c1m_A 156 AGIITDNN------FGS-ARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEI 228 (473)
T ss_dssp HTEEECSC------TTS-CCEEEECHHHHHHHHHHTTCEEEEESSEEEETTSCEEECCTTTHHHHHHHHHHHTTCSEEEE
T ss_pred eeEEEccC------CCC-ccccHhhhHHHHHHHHhCCcEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEE
Confidence 98988764 444 677 5889999999999999999998 677888988887 99999999999999999999
Q ss_pred eecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCC
Q 018330 275 LTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAG 351 (358)
Q Consensus 275 lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g 351 (358)
+|||||||+++| +|+ ++|++++++|+.++...| .++|.|| ++..+.+.|++ ++|.|++.|+ +
T Consensus 229 ~TDVdGv~~~dP~~~~~a~~i~~is~~e~~~l~~~g--~~~m~~~--a~~~a~~~gi~-v~I~~~~~~~----------~ 293 (473)
T 3c1m_A 229 WTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFG--AKVLHPR--TIEPAMEKGIP-ILVKNTFEPE----------S 293 (473)
T ss_dssp EESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHHHTT--CTTSCGG--GHHHHHHHTCC-EEEEETTSTT----------S
T ss_pred eeCCCcceeCCCCCCCCCeEecccCHHHHHHHHhcC--CcchHHH--HHHHHHHcCCE-EEEEecCCCC----------C
Confidence 999999999865 344 699999999999997644 4899997 77778888999 9999998874 6
Q ss_pred CceEEcC
Q 018330 352 AGTMITG 358 (358)
Q Consensus 352 ~GT~I~~ 358 (358)
.||+|.+
T Consensus 294 ~GT~i~~ 300 (473)
T 3c1m_A 294 EGTLITN 300 (473)
T ss_dssp CCEEEES
T ss_pred ceEEEec
Confidence 8999863
No 41
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=99.92 E-value=1.4e-23 Score=213.73 Aligned_cols=237 Identities=16% Similarity=0.225 Sum_probs=167.1
Q ss_pred cCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECCh-HHHhHHHHHcCC-------Ccccc--------
Q 018330 92 RGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGG-PEINFWLKRFGI-------EPVFR-------- 155 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l~~~gi-------~~~~~-------- 155 (358)
..+++|.||||+++.+ .+.+..+++.|... .++++|+|+++. ...+.+++.... ...+.
T Consensus 25 ~~~~~V~KFGGTSva~---~e~i~~va~iI~~~--~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~~~~~~~~~~~~~i~~ 99 (510)
T 2cdq_A 25 KGITCVMKFGGSSVAS---AERMKEVADLILTF--PEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKE 99 (510)
T ss_dssp CCCCEEEEECTGGGSS---HHHHHHHHHHHHHC--TTCCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCHHHHHHHH
T ss_pred CCCeEEEEECCcccCC---HHHHHHHHHHHHhc--cCCCEEEEEcCCCCCchHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4578999999999999 65556666666432 357889999884 444444321110 00000
Q ss_pred ---------------------------CCc---ccCCHHHHHHHHHHHhhh-hHH-HHHHHHHHcCCeeEeecCCCccEE
Q 018330 156 ---------------------------DGL---RVTDANTMEIVSMVLVGR-VNK-SLVSLINKAGATAVGLSGMDGRLF 203 (358)
Q Consensus 156 ---------------------------~g~---rvt~~~~~~~v~~vl~g~-ln~-~lv~~L~~~Gi~av~lsg~d~~ll 203 (358)
.|. ....+..++.+.+ .|+ ++. .+...|+++|++++++++.+.+++
T Consensus 100 ~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s--~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~ 177 (510)
T 2cdq_A 100 LHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVS--FGECLSTRIFAAYLNTIGVKARQYDAFEIGFI 177 (510)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH--HHHHHHHHHHHHHHHHTTCCEEEECGGGTTCE
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEE
Confidence 000 0001222333322 244 343 467899999999999999998888
Q ss_pred EeecCCCCCCCCcccceeec----CHHHHHH-HHhCCCeEEEcC-CccCC-CCCccccC---hHHHHHHHHHHcCCCeEE
Q 018330 204 TARPSPNSDKLGFVGEVARV----DPTVIEP-LVNSGHIPVIAS-VAADE-FGQSYNIN---ADTVAGELAAALGAEKLI 273 (358)
Q Consensus 204 ~a~~~~~~~d~g~~g~v~~i----~~~~I~~-lL~~G~IPVi~g-v~~~~-~G~~~~i~---sD~~Aa~lA~~L~AdkLi 273 (358)
+...+.. +++..+ ..+.+.. |++.|.|||++| ++.++ +|.+++++ +|++|+.+|..|+|++|+
T Consensus 178 t~~~~~~-------~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~ 250 (510)
T 2cdq_A 178 TTDDFTN-------GDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQ 250 (510)
T ss_dssp ECSCSTT-------CCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEE
T ss_pred EecCCCc-------cchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEE
Confidence 8664331 222222 2345554 779999999999 67788 89998886 999999999999999999
Q ss_pred Eeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCC
Q 018330 274 LLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDA 350 (358)
Q Consensus 274 ~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~ 350 (358)
++|||||||+.+| .|+ ++|++|+++|+.++... .+++|.|| ++..+.+.|++ ++|.|+..|+
T Consensus 251 i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~--Ga~vmh~~--a~~~a~~~gIp-v~I~n~~~p~---------- 315 (510)
T 2cdq_A 251 VWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYF--GAQVLHPQ--SMRPAREGEIP-VRVKNSYNPK---------- 315 (510)
T ss_dssp EEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHH--HSSCCCHH--HHHHHHHHTCC-EEEEETTSTT----------
T ss_pred EEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhc--CcchhHHH--HHHHHHHCCCe-EEEEccCcCC----------
Confidence 9999999999854 234 69999999999999753 34789886 66677788999 9999988773
Q ss_pred CCceEEc
Q 018330 351 GAGTMIT 357 (358)
Q Consensus 351 g~GT~I~ 357 (358)
..||+|.
T Consensus 316 ~~GT~I~ 322 (510)
T 2cdq_A 316 APGTIIT 322 (510)
T ss_dssp SCCEEEE
T ss_pred CCCeEEe
Confidence 5788885
No 42
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=99.91 E-value=1.3e-23 Score=211.40 Aligned_cols=230 Identities=17% Similarity=0.236 Sum_probs=159.7
Q ss_pred CCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCc----------c-------cc
Q 018330 93 GKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEP----------V-------FR 155 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~----------~-------~~ 155 (358)
.+++|.||||+++.+ .+.+..+++.|. ....++|+|+|+...++..|.++.... . ..
T Consensus 2 m~~~V~KFGGTSv~~---~e~i~~va~ii~---~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~i~~i~~~~~~i~ 75 (449)
T 2j0w_A 2 SEIVVSKFGGTSVAD---FDAMNRSADIVL---SDANVRLVVLSASAGITNLLVALAEGLEPGERFEKLDAIRNIQFAIL 75 (449)
T ss_dssp -CCEEEEECSGGGSS---HHHHHHHHHHHT---SCTTEEEEEECCCTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCccCCC---HHHHHHHHHHHH---hcCCCEEEEeCCCCchHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 357999999999999 654455555543 234589999999544544443332110 0 00
Q ss_pred CCcc-------------------------cCCHHHHHHHHHHHhhhh-HH-HHHHHHHHcCCeeEeecCCCccEEEeecC
Q 018330 156 DGLR-------------------------VTDANTMEIVSMVLVGRV-NK-SLVSLINKAGATAVGLSGMDGRLFTARPS 208 (358)
Q Consensus 156 ~g~r-------------------------vt~~~~~~~v~~vl~g~l-n~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~ 208 (358)
+.+. ...+..++.+.+ .|+. +. .++..|+++|++++++++.+. +++...
T Consensus 76 ~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~l~s--~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~- 151 (449)
T 2j0w_A 76 ERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVS--HGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDR- 151 (449)
T ss_dssp TTSSSTHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--HHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSC-
T ss_pred HHhcccHHHHHHHHHHHHHHHHHhhhhccCcCHHHHHHHHH--HHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCC-
Confidence 0110 001223333333 2444 33 578899999999999999887 555332
Q ss_pred CCCCCCCcccceeec-----CHHHHHHHHhCCCeEEEcC-CccCCCCCccccC---hHHHHHHHHHHcCCCeEEEeeccc
Q 018330 209 PNSDKLGFVGEVARV-----DPTVIEPLVNSGHIPVIAS-VAADEFGQSYNIN---ADTVAGELAAALGAEKLILLTDVA 279 (358)
Q Consensus 209 ~~~~d~g~~g~v~~i-----~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i~---sD~~Aa~lA~~L~AdkLi~lTDV~ 279 (358)
|+. +++... ..+.++.|++.+ |||++| ++.+++|.+++++ +|++|+.+|.+|+|++|+++||||
T Consensus 152 -----~~~-~~~~~~~~~~~~~~~l~~l~~~~-IpVv~Gf~g~~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVd 224 (449)
T 2j0w_A 152 -----FGR-AEPDIAALAELAALQLLPRLNEG-LVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVP 224 (449)
T ss_dssp -----TTS-CCBCHHHHHHHHHHHTHHHHHHS-EEEEESSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred -----CCC-ccccHhHhHHHHHHHHHHHhcCC-EEEEeCCeeeCCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccC
Confidence 221 222221 234566666555 999998 6778999998887 999999999999999999999999
Q ss_pred ccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHH---HHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCc
Q 018330 280 GILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKV---NCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAG 353 (358)
Q Consensus 280 GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv---~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~G 353 (358)
|||+++| .|+ ++|++++++|+.+++..| +|+ +++..+.+.|++ ++|.|++.|+ +.|
T Consensus 225 Gv~~~DPr~~~~a~~i~~is~~e~~ela~~G-------~kvlh~~a~~~a~~~gi~-v~I~~~~~p~----------~~G 286 (449)
T 2j0w_A 225 GIYTTDPRVVSAAKRIDEIAFAEAAEMATFG-------AKVLHPATLLPAVRSDIP-VFVGSSKDPR----------AGG 286 (449)
T ss_dssp SEESSCTTTCTTCCEESEEEHHHHHHHHHTT-------CTTSCTTTHHHHHHHTCC-EEEEESSCTT----------SCC
T ss_pred CcCcCCCCCCCCCEEccCccHHHHHHHHhcC-------CccchHHHHHHHHHCCCe-EEEEECCCCC----------CCe
Confidence 9999855 244 699999999999997643 477 566678889998 9999998874 689
Q ss_pred eEEc
Q 018330 354 TMIT 357 (358)
Q Consensus 354 T~I~ 357 (358)
|+|.
T Consensus 287 T~I~ 290 (449)
T 2j0w_A 287 TLVC 290 (449)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 9986
No 43
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=99.83 E-value=3.3e-20 Score=186.08 Aligned_cols=123 Identities=18% Similarity=0.187 Sum_probs=100.9
Q ss_pred eeecCHHHHHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-ccc
Q 018330 220 VARVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLV 292 (358)
Q Consensus 220 v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI 292 (358)
+..++.+.+..+|+.|.|||++| ++.+++|.+.++ ++|++|+.+|.+|+|++++++|||||||+++|. |+ ++|
T Consensus 148 ~~~~~~~~l~~~l~~~~v~Vv~Gf~g~~~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i 227 (446)
T 3tvi_A 148 DEKKSYEKIKEKVLSCNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTI 227 (446)
T ss_dssp CHHHHHHHHHHHTTTCSSEECCCSEEECTTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBC
T ss_pred ehHhhHHHHHHHHhcCCeEEeeCceecCCCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEc
Confidence 34567889999999999999999 577888998877 599999999999999999999999999998542 44 699
Q ss_pred ccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 293 KEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 293 ~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
++++++|+.+++..| .+.| +.+++.-+.+.|++ ++|.|+..|+ ..||+|.
T Consensus 228 ~~is~~e~~ela~~G--a~vl--~~~a~~~a~~~~ip-i~i~~~~~p~----------~~GT~i~ 277 (446)
T 3tvi_A 228 SKISYKELRELSYMG--ATVL--HEEAIFPVKDSGIP-INIKNTNKPS----------DPGTLIL 277 (446)
T ss_dssp SEEEHHHHHHTTTC------C--CSTTTHHHHHSSCC-EEEEETTBTT----------SCCEEEE
T ss_pred ceeCHHHHHHHHhCC--CCcc--hHHHHHHHHHcCCe-EEEecCCCCC----------CCCEEEe
Confidence 999999999996533 3556 34577788889999 9999987763 5688875
No 44
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=69.98 E-value=7.9 Score=29.86 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=40.0
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECCh-HHHhHHHHHcCCCc
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGG-PEINFWLKRFGIEP 152 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l~~~gi~~ 152 (358)
|.++.-+.|..... ..+...+.+-|..|++.|++++|+.++. ..+...++.+++..
T Consensus 3 k~i~~D~DgtL~~~---~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~ 59 (137)
T 2pr7_A 3 RGLIVDYAGVLDGT---DEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNG 59 (137)
T ss_dssp CEEEECSTTTTSSC---HHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTT
T ss_pred cEEEEeccceecCC---CccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHh
Confidence 56788888877333 4455667777788888999999999884 34466667666553
No 45
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=59.60 E-value=20 Score=34.39 Aligned_cols=70 Identities=16% Similarity=0.262 Sum_probs=49.8
Q ss_pred ChhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChh--HHH-HHHHHHHHHhHhCCCeEEEEECChHHHh
Q 018330 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKD--NLL-ASVVKDLVLLSVVGLRPVLVHGGGPEIN 142 (358)
Q Consensus 73 ~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~--~l~-~~~~~~Ia~L~~~G~~vVLVhGgg~~i~ 142 (358)
....+...|.+.+|.++.|+-..|||-.|--+...+... .+- +.+..-...+++.+.++++|.+||-...
T Consensus 272 ~d~~yl~~~~~~l~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~~~~~v~vleGGY~~~ 344 (362)
T 3men_A 272 SEAAFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIE 344 (362)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTTCCCEEEEECCCCCHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHhhCCCEEEEECCCCCHH
Confidence 567889999999999999999999999998777664310 010 2222223345566789999999985443
No 46
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=57.82 E-value=27 Score=30.55 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=42.0
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hH---HHhHHHHHcCCC
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GP---EINFWLKRFGIE 151 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~---~i~~~l~~~gi~ 151 (358)
|.+++=+.|..+.+ ........+.|..+++.|++++++.|. +. .+...+.++|+.
T Consensus 7 kli~~DlDGTLl~~---~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~ 65 (266)
T 3pdw_A 7 KGYLIDLDGTMYNG---TEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65 (266)
T ss_dssp SEEEEECSSSTTCH---HHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCC
T ss_pred CEEEEeCcCceEeC---CEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 78999999998876 445566788888999999999999983 32 334556777775
No 47
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=53.24 E-value=73 Score=24.98 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=53.9
Q ss_pred hhhHHHHHhhh-HHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCC
Q 018330 75 EFRVDILSESL-PFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIE 151 (358)
Q Consensus 75 ~~~~~~l~~a~-pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~ 151 (358)
...++.|++.+ ..+.+.+-+.+|+-+.|-.+-| ......+.+-...++..|.++ ++.|-.|.+.+.+...|+.
T Consensus 24 ~~~a~~l~~~ll~~i~~~~~~~vIlDlsgV~~iD---s~g~~~L~~~~~~~~l~G~~~-~l~Gi~p~va~~l~~~G~~ 97 (123)
T 3zxn_A 24 DQSVIQFKEELLHNITGVAGKGLVIDISALEVVD---EFVTRVLIEISRLAELLGLPF-VLTGIKPAVAITLTEMGLD 97 (123)
T ss_dssp CHHHHHHHHHHHHHHTSSCCSEEEEECTTCSSCC---HHHHHHHHHHHHHHHHHTCCE-EEECCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCccc---HHHHHHHHHHHHHHHHCCCEE-EEEcCCHHHHHHHHHhCCC
Confidence 56667777765 5666666788999999999988 544344555555566678886 5567889999999999986
No 48
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=53.06 E-value=19 Score=34.21 Aligned_cols=64 Identities=22% Similarity=0.320 Sum_probs=47.1
Q ss_pred ChhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCCh------hHHHHHHHHHHHHhHhCCCeEEEEECChH
Q 018330 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQK------DNLLASVVKDLVLLSVVGLRPVLVHGGGP 139 (358)
Q Consensus 73 ~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~------~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~ 139 (358)
....+...|.+.+|-++.|+-..|||-.|--+...+.. ++-...+.+ .+++.+.++++|.+||-
T Consensus 254 ~d~~y~~~~~~~l~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~---~l~~~~~~~v~vleGGY 323 (341)
T 3q9b_A 254 PYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGR---TIAASGVPLLVVMEGGY 323 (341)
T ss_dssp BHHHHHHHHHHHHHHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHH---HHHTTSSCEEEEECCCC
T ss_pred ChHHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHH---HHHHhCCCEEEEECCCC
Confidence 56788999999999999999999999999877766421 111123333 34556789999999984
No 49
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=52.29 E-value=16 Score=36.13 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=36.5
Q ss_pred HHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHH-hHhCCCeEEEEECChHH
Q 018330 78 VDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVL-LSVVGLRPVLVHGGGPE 140 (358)
Q Consensus 78 ~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~-L~~~G~~vVLVhGgg~~ 140 (358)
-++||+| .-++.++.+.+|+=+|++.. + +.. ...+.++.. |.+.|+ .||.|||+.
T Consensus 132 f~~Lrna-~~~~p~r~~~IvV~cGSs~~-~---p~y-ye~A~eLGr~LA~~G~--~LVtGGG~G 187 (462)
T 3gh1_A 132 FGILRNA-GALIPGATPNLVVCWGGHSI-N---EVE-YQYTREVGHELGLREL--NICTGCGPG 187 (462)
T ss_dssp HHHHHHT-TCCCTTCCSCEEEEECCSSC-C---HHH-HHHHHHHHHHHHHTTC--EEEECCSSG
T ss_pred HHHHhhc-cccCCCCCCCEEEEECCCCC-C---HHH-HHHHHHHHHHHHHCCC--EEEeCCcHH
Confidence 3445555 44455677899999999984 5 433 356777765 445665 489999854
No 50
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=51.35 E-value=11 Score=32.24 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=32.7
Q ss_pred hHHHHhhcC--CeEEEEECCcccCCCCh------hHHHHHHHHHHHHhHhCCCeEEEEECChH
Q 018330 85 LPFIQKFRG--KTIVVKYGGAAMKPNQK------DNLLASVVKDLVLLSVVGLRPVLVHGGGP 139 (358)
Q Consensus 85 ~pyi~~~~~--k~iVIKlGGs~l~~k~~------~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~ 139 (358)
.|.++.++. +.+++-+.|..+.++.. ..+...+.+-|..|++.|++++||.++..
T Consensus 15 ~~~~~~m~~~~k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~ 77 (211)
T 2gmw_A 15 VPRGSHMAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSG 77 (211)
T ss_dssp ---------CBCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTH
T ss_pred cccchhhhhcCCEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCC
Confidence 344554432 57899999988766310 01224556667778889999999998864
No 51
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=50.48 E-value=19 Score=31.52 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=41.4
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECCh----HHHhHHHHHcCCCc
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGG----PEINFWLKRFGIEP 152 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg----~~i~~~l~~~gi~~ 152 (358)
|.+++=+.|..+.++. ......+.|..+++.|++++++.|.. ......++.+|+..
T Consensus 9 kli~~DlDGTLl~~~~---~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~~ 68 (268)
T 3qgm_A 9 KGYIIDIDGVIGKSVT---PIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEV 68 (268)
T ss_dssp SEEEEECBTTTEETTE---ECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCCC
T ss_pred CEEEEcCcCcEECCCE---eCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCCC
Confidence 7899999999988732 23446777888889999999999942 23445667777753
No 52
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=41.42 E-value=35 Score=32.77 Aligned_cols=69 Identities=16% Similarity=0.306 Sum_probs=48.5
Q ss_pred ChhhhHHHHHhhh-HHHHhhcCCeEEEEECCcccCCCChhH--H-HHHHHHHHHHhHhCCCeEEEEECChHHH
Q 018330 73 PAEFRVDILSESL-PFIQKFRGKTIVVKYGGAAMKPNQKDN--L-LASVVKDLVLLSVVGLRPVLVHGGGPEI 141 (358)
Q Consensus 73 ~~~~~~~~l~~a~-pyi~~~~~k~iVIKlGGs~l~~k~~~~--l-~~~~~~~Ia~L~~~G~~vVLVhGgg~~i 141 (358)
....+...|.+.+ |-++.|+-..|||-.|--+...+.... + .+.+..-...+++.+.++++|.|||-..
T Consensus 227 ~d~~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~~~~p~v~~~eGGY~~ 299 (367)
T 3max_A 227 DDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTI 299 (367)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTTCCCEEEECCCCCSH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHhcCCCEEEEeCCCCCh
Confidence 5678888998876 589999999999999998887653111 1 0222333344556688999999998644
No 53
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=35.98 E-value=1.2e+02 Score=28.96 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=48.7
Q ss_pred ChhhhHHHHHh-hhHHHHhhcCCeEEEEECCcccCCCCh------hHHHHHHHHHHHHhHh--CCCeEEEEECChH
Q 018330 73 PAEFRVDILSE-SLPFIQKFRGKTIVVKYGGAAMKPNQK------DNLLASVVKDLVLLSV--VGLRPVLVHGGGP 139 (358)
Q Consensus 73 ~~~~~~~~l~~-a~pyi~~~~~k~iVIKlGGs~l~~k~~------~~l~~~~~~~Ia~L~~--~G~~vVLVhGgg~ 139 (358)
....+...|.+ .+|.+++|+-..|||-.|--+..++.. ++-...+.+.|..+.. .+.++|+|.|||-
T Consensus 237 ~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGGY 312 (369)
T 1zz1_A 237 GNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGY 312 (369)
T ss_dssp BHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 56788888888 688999999999999999888876531 2222344455544422 5789999999984
No 54
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=34.19 E-value=47 Score=31.90 Aligned_cols=69 Identities=10% Similarity=0.224 Sum_probs=48.4
Q ss_pred ChhhhHHHHHhhhH-HHHhhcCCeEEEEECCcccCCCChhH--H-HHHHHHHHHHhHhCCCeEEEEECChHHH
Q 018330 73 PAEFRVDILSESLP-FIQKFRGKTIVVKYGGAAMKPNQKDN--L-LASVVKDLVLLSVVGLRPVLVHGGGPEI 141 (358)
Q Consensus 73 ~~~~~~~~l~~a~p-yi~~~~~k~iVIKlGGs~l~~k~~~~--l-~~~~~~~Ia~L~~~G~~vVLVhGgg~~i 141 (358)
....+...|.+.++ -++.|+-..||+-.|--+...+.... + .+.+.+-...+++.+.++++|.|||-..
T Consensus 228 ~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~ 300 (376)
T 4a69_A 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTV 300 (376)
T ss_dssp BHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCSH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCCh
Confidence 56788889988765 68999999999999988887653110 1 0222333344556688999999998644
No 55
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=33.30 E-value=1.9e+02 Score=26.42 Aligned_cols=151 Identities=15% Similarity=0.251 Sum_probs=75.6
Q ss_pred CChhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCC
Q 018330 72 TPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIE 151 (358)
Q Consensus 72 ~~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~ 151 (358)
.+.....+.|.-+-+||. .+|||+....-- ++ +-+.|..+++.|.. +-. ||......+.+
T Consensus 50 lg~~~~~DlLe~ag~yID-------~lKfg~GTs~l~--~~----l~ekI~l~~~~gV~--v~~-GGTlfE~~l~q---- 109 (276)
T 1u83_A 50 YPLQFFKDAIAGASDYID-------FVKFGWGTSLLT--KD----LEEKISTLKEHDIT--FFF-GGTLFEKYVSQ---- 109 (276)
T ss_dssp CCHHHHHHHHHHHGGGCC-------EEEECTTGGGGC--TT----HHHHHHHHHHTTCE--EEE-CHHHHHHHHHT----
T ss_pred CCHHHHHHHHHHhhhhcc-------eEEecCcchhhh--HH----HHHHHHHHHHcCCe--EeC-CcHHHHHHHHc----
Confidence 366777888888999987 789986543220 22 34455556666654 344 44444333221
Q ss_pred ccccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHH
Q 018330 152 PVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPL 231 (358)
Q Consensus 152 ~~~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~l 231 (358)
+ .-..+.+.+.+.|..++.+|- +- .++. ..--.+.|+.+
T Consensus 110 -----------------------g-~~~~yl~~~k~lGF~~IEISd--Gt----------i~l~-----~~~~~~lI~~a 148 (276)
T 1u83_A 110 -----------------------K-KVNEFHRYCTYFGCEYIEISN--GT----------LPMT-----NKEKAAYIADF 148 (276)
T ss_dssp -----------------------T-CHHHHHHHHHHTTCSEEEECC--SS----------SCCC-----HHHHHHHHHHH
T ss_pred -----------------------C-cHHHHHHHHHHcCCCEEEECC--Cc----------ccCC-----HHHHHHHHHHH
Confidence 1 113466778899999998872 10 0110 11123455554
Q ss_pred HhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHc--CCCeEEEee---ccccccccc
Q 018330 232 VNSGHIPVIASVAADEFGQSYNINADTVAGELAAAL--GAEKLILLT---DVAGILENR 285 (358)
Q Consensus 232 L~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L--~AdkLi~lT---DV~GV~~~~ 285 (358)
-+. .-|+++++.-........+.+.....+...| ||+++|+=. ..+|||++.
T Consensus 149 ~~~--f~Vl~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEaRESG~~Gi~~~~ 205 (276)
T 1u83_A 149 SDE--FLVLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEARESGTGGICSSS 205 (276)
T ss_dssp TTT--SEEEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC-------------
T ss_pred Hhh--cEEeeeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEeeeccCCCCccCCC
Confidence 444 6677776532111123345666666665555 667776654 114999863
No 56
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=32.24 E-value=2.2e+02 Score=25.68 Aligned_cols=206 Identities=16% Similarity=0.248 Sum_probs=106.5
Q ss_pred CChhhhHHHHHhhhHHHHhhcCCeEEEEECCcc--cCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcC
Q 018330 72 TPAEFRVDILSESLPFIQKFRGKTIVVKYGGAA--MKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFG 149 (358)
Q Consensus 72 ~~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~--l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~g 149 (358)
.+.....+.|.-+-+||. .+|+|+.. +.+ ++. +-+.|...++.|.. +-.|| ......+.+
T Consensus 23 lg~~~~~d~Le~~g~yID-------~lKfg~Gt~~l~~---~~~---l~eki~l~~~~gV~--v~~GG-Tl~E~~~~q-- 84 (251)
T 1qwg_A 23 LPPKFVEDYLKVCGDYID-------FVKFGWGTSAVID---RDV---VKEKINYYKDWGIK--VYPGG-TLFEYAYSK-- 84 (251)
T ss_dssp CCHHHHHHHHHHHGGGCS-------EEEECTTGGGGSC---HHH---HHHHHHHHHTTTCE--EEECH-HHHHHHHHT--
T ss_pred CCHHHHHHHHHHhhhhcc-------eEEecCceeeecC---HHH---HHHHHHHHHHcCCe--EECCc-HHHHHHHHc--
Confidence 356777888888899987 78998654 333 221 23344445555544 44444 433332221
Q ss_pred CCccccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHH
Q 018330 150 IEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIE 229 (358)
Q Consensus 150 i~~~~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~ 229 (358)
+ .-..+.+.+.+.|..++.+|- +- .++. ..--.+.|+
T Consensus 85 -------------------------g-~~~~yl~~~k~lGf~~iEiS~--G~----------i~l~-----~~~~~~~I~ 121 (251)
T 1qwg_A 85 -------------------------G-KFDEFLNECEKLGFEAVEISD--GS----------SDIS-----LEERNNAIK 121 (251)
T ss_dssp -------------------------T-CHHHHHHHHHHHTCCEEEECC--SS----------SCCC-----HHHHHHHHH
T ss_pred -------------------------C-cHHHHHHHHHHcCCCEEEECC--Cc----------ccCC-----HHHHHHHHH
Confidence 1 112466677888999988872 10 0110 111255777
Q ss_pred HHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHc--CCCeEEEeecc---c-cccccccccCcccccccHHHHHHH
Q 018330 230 PLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAAL--GAEKLILLTDV---A-GILENREDPMSLVKEIDIKGVKKM 303 (358)
Q Consensus 230 ~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L--~AdkLi~lTDV---~-GV~~~~~dp~~lI~~I~~~e~~~l 303 (358)
.+-+.|+.+ +++++.-........+.+.....+...| ||+++|+=... . |||++. .++..+.+.++
T Consensus 122 ~~~~~G~~v-~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~ViiEarEsG~~iGi~~~~-------g~~r~d~v~~i 193 (251)
T 1qwg_A 122 RAKDNGFMV-LTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKE-------GKVKENELDVL 193 (251)
T ss_dssp HHHHTTCEE-EEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCTTTCCSSTTBCTT-------SCBCHHHHHHH
T ss_pred HHHHCCCEE-eeeccccCCcccCCCCHHHHHHHHHHHHHCCCcEEEEeeecccCCcccCCCC-------CCCcHHHHHHH
Confidence 777888776 5555421110112346666666665554 67877765532 1 888763 23333444444
Q ss_pred HhCCC----CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHc
Q 018330 304 IEDGK----VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILT 348 (358)
Q Consensus 304 ~~~~~----vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~ 348 (358)
+..-. +----.++.+. .-..+-|.. |.+.|-.-.+.+-.|-+.
T Consensus 194 ~~~l~~eklifEAp~k~qq~-~fI~~fG~~-VNLgNI~~~eVi~LE~LR 240 (251)
T 1qwg_A 194 AKNVDINKVIFEAPQKSQQV-AFILKFGSS-VNLANIAFDEVISLETLR 240 (251)
T ss_dssp HTTSCGGGEEEECCSHHHHH-HHHHHHCTT-CCEEEEEGGGHHHHHHHH
T ss_pred HHhCChhhEEEECCChHHHH-HHHHHhCCC-ccccCCCHHHHHHHHHHH
Confidence 43110 00111234332 233455766 777553334445555554
No 57
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=30.28 E-value=27 Score=28.67 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=32.2
Q ss_pred CCeEEEEECCcccCCCCh--hHHHHHHHHHHHHhHhCCCeEEEEECC
Q 018330 93 GKTIVVKYGGAAMKPNQK--DNLLASVVKDLVLLSVVGLRPVLVHGG 137 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~--~~l~~~~~~~Ia~L~~~G~~vVLVhGg 137 (358)
.|.+++=+.|.++.+... ........+.|..|++.|++++|+.|=
T Consensus 3 ~k~i~~DlDGTL~~~~~~~i~~~~~~~~~al~~l~~~G~~iii~TgR 49 (142)
T 2obb_A 3 AMTIAVDFDGTIVEHRYPRIGEEIPFAVETLKLLQQEKHRLILWSVR 49 (142)
T ss_dssp CCEEEECCBTTTBCSCTTSCCCBCTTHHHHHHHHHHTTCEEEECCSC
T ss_pred CeEEEEECcCCCCCCCCccccccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888999998886310 011235677788888999999999875
No 58
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=29.71 E-value=67 Score=26.36 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=42.3
Q ss_pred CeEEEEECCcccCCCC-----h---hHHHHHHHHHHHHhHhCCCeEEEEECCh-HHHhHHHHHcCCCccc
Q 018330 94 KTIVVKYGGAAMKPNQ-----K---DNLLASVVKDLVLLSVVGLRPVLVHGGG-PEINFWLKRFGIEPVF 154 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~-----~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l~~~gi~~~~ 154 (358)
|.++.=+.|..+.+.. . ..+.....+-|..|++.|++++|+.|.. ..+...++++|+..-|
T Consensus 9 k~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~ 78 (180)
T 1k1e_A 9 KFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFF 78 (180)
T ss_dssp CEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEE
T ss_pred eEEEEeCCCCcCCCCeeeccCcceeeeeccchHHHHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceee
Confidence 7899999999886521 0 0111233456777888999999999984 4556778888987544
No 59
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=27.35 E-value=53 Score=32.44 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=28.6
Q ss_pred cCCeEEEEECCcccCCCChhHHHHHHHHHHHH-hHhCCCeEEEEECChHH
Q 018330 92 RGKTIVVKYGGAAMKPNQKDNLLASVVKDLVL-LSVVGLRPVLVHGGGPE 140 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~-L~~~G~~vVLVhGgg~~ 140 (358)
+.+.+|+=+||+...+ +.. ..+.++.. |.+.| +.||.|||+.
T Consensus 143 ~~~~ivVv~GSs~~~~---~~Y--e~A~eLGr~LA~~G--~~LVtGGG~G 185 (460)
T 3bq9_A 143 EEPNMVVCWGGHSINE---IEY--KYTKDVGYHIGLRG--LNICTGCGPG 185 (460)
T ss_dssp CCSCEEEEECCSSCCH---HHH--HHHHHHHHHHHHTT--CEEEECCSSG
T ss_pred CCCCEEEEEcCCCCCC---HHH--HHHHHHHHHHHHCC--CEEEeCCcHH
Confidence 4567888899998654 433 56677765 34444 5699999873
No 60
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=27.26 E-value=1e+02 Score=25.71 Aligned_cols=36 Identities=17% Similarity=0.042 Sum_probs=26.7
Q ss_pred HHHHHHHHhHhCCCeEEEEECCh-HHHhHHHHHcCCC
Q 018330 116 SVVKDLVLLSVVGLRPVLVHGGG-PEINFWLKRFGIE 151 (358)
Q Consensus 116 ~~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l~~~gi~ 151 (358)
.+.+-|..|++.|++++||+|+- ..+...++.+|+.
T Consensus 96 g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~ 132 (232)
T 3fvv_A 96 QAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQ 132 (232)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 34455666778899999999884 3556778888886
No 61
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=27.05 E-value=2.2e+02 Score=21.94 Aligned_cols=70 Identities=10% Similarity=0.154 Sum_probs=46.0
Q ss_pred HHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCc
Q 018330 78 VDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEP 152 (358)
Q Consensus 78 ~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~ 152 (358)
++.|++.+..+. -..+.+|+-+.+-..-| ..-...+.+-...++..|.+++++ |-.+.+...++..|+..
T Consensus 35 a~~~~~~l~~~~-~~~~~vvlDls~v~~iD---ssgl~~L~~~~~~~~~~g~~l~l~-~~~~~v~~~l~~~gl~~ 104 (130)
T 4dgh_A 35 AETFERVMGSIQ-ETPQILILRLKWVPFMD---ITGIQTLEEMIQSFHKRGIKVLIS-GANSRVSQKLVKAGIVK 104 (130)
T ss_dssp HHHHHHHHHHSS-SCCSEEEEECTTCCCCC---HHHHHHHHHHHHHHHTTTCEEEEE-CCCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhc-cCCCEEEEECCCCCccc---HHHHHHHHHHHHHHHHCCCEEEEE-cCCHHHHHHHHHcCChh
Confidence 445555544331 23478999999888777 544455566556677888887765 55677778888877653
No 62
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=26.37 E-value=75 Score=26.11 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=29.8
Q ss_pred HHHHHHHHHhHhCCCeEEEEECCh--HHHhHHHHHcCCCccc
Q 018330 115 ASVVKDLVLLSVVGLRPVLVHGGG--PEINFWLKRFGIEPVF 154 (358)
Q Consensus 115 ~~~~~~Ia~L~~~G~~vVLVhGgg--~~i~~~l~~~gi~~~~ 154 (358)
..+.+-|..|++.|++++|+.|+. ..+...++.+|+..-|
T Consensus 71 ~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~~gl~~~f 112 (187)
T 2wm8_A 71 PEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYF 112 (187)
T ss_dssp TTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTTCTTTE
T ss_pred hhHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHHcCcHhhc
Confidence 344555666777899999999986 4567788888887544
No 63
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=26.12 E-value=91 Score=25.65 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=27.5
Q ss_pred HHHHHHHHHhHhCCCeEEEEECCh----HHHhHHHHHcCCCc
Q 018330 115 ASVVKDLVLLSVVGLRPVLVHGGG----PEINFWLKRFGIEP 152 (358)
Q Consensus 115 ~~~~~~Ia~L~~~G~~vVLVhGgg----~~i~~~l~~~gi~~ 152 (358)
..+.+-|..|++.|++++|+.++. ..+...++++|+..
T Consensus 37 ~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~ 78 (189)
T 3ib6_A 37 KNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIID 78 (189)
T ss_dssp TTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGG
T ss_pred cCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchh
Confidence 345666777888899999999885 45556667777654
No 64
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=26.09 E-value=83 Score=27.76 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=42.1
Q ss_pred hcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCCc
Q 018330 91 FRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIEP 152 (358)
Q Consensus 91 ~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~~ 152 (358)
.+-|.++.=+.|..+.++. .+.....+.|..+++.|++++++.|=.. .+..+++.++++.
T Consensus 19 ~~~kli~~DlDGTLl~~~~--~i~~~~~~al~~l~~~G~~v~iaTGR~~~~~~~~~~~l~~~~ 79 (285)
T 3pgv_A 19 GMYQVVASDLDGTLLSPDH--FLTPYAKETLKLLTARGINFVFATGRHYIDVGQIRDNLGIRS 79 (285)
T ss_dssp --CCEEEEECCCCCSCTTS--CCCHHHHHHHHHHHTTTCEEEEECSSCGGGGHHHHHHHCSCC
T ss_pred CcceEEEEeCcCCCCCCCC--cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCCCc
Confidence 3348999999999998743 1223456667778888999999987643 3456667777763
No 65
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=25.80 E-value=3.9e+02 Score=24.49 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=24.0
Q ss_pred CCCeEEEcC-CccCCCCCccccChHHHHHHHHHHcCCCeEEE
Q 018330 234 SGHIPVIAS-VAADEFGQSYNINADTVAGELAAALGAEKLIL 274 (358)
Q Consensus 234 ~G~IPVi~g-v~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~ 274 (358)
-|+=.|+=| .+.+..|....-|.+.+...+..+..-+.-++
T Consensus 176 lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~~~~vl 217 (357)
T 4fu0_A 176 LTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVI 217 (357)
T ss_dssp CCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTTCSEEE
T ss_pred cCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhccCCeEE
Confidence 454233444 33444555455588888888888777654433
No 66
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=25.41 E-value=3e+02 Score=25.91 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred hhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCC
Q 018330 83 ESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTD 162 (358)
Q Consensus 83 ~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~ 162 (358)
+++.++..+ ..=++|+|..-+++ ..+++.++.. .++||+.=|..-+..+...
T Consensus 115 ~svd~l~~~--~v~~~KI~S~~~~n-------~~LL~~va~~----gkPviLstGmat~~Ei~~A--------------- 166 (349)
T 2wqp_A 115 AAALRLQRM--DIPAYKIGSGECNN-------YPLIKLVASF----GKPIILSTGMNSIESIKKS--------------- 166 (349)
T ss_dssp HHHHHHHHH--TCSCEEECGGGTTC-------HHHHHHHHTT----CSCEEEECTTCCHHHHHHH---------------
T ss_pred HHHHHHHhc--CCCEEEECcccccC-------HHHHHHHHhc----CCeEEEECCCCCHHHHHHH---------------
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCC-CeEEEc
Q 018330 163 ANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSG-HIPVIA 241 (358)
Q Consensus 163 ~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G-~IPVi~ 241 (358)
++.+.+.|.+.+-+.+... |.-....+|...|..|-+.- .+||
T Consensus 167 -------------------ve~i~~~G~~iiLlhc~s~---------------Yp~~~~~~nL~ai~~lk~~f~~lpV-- 210 (349)
T 2wqp_A 167 -------------------VEIIREAGVPYALLHCTNI---------------YPTPYEDVRLGGMNDLSEAFPDAII-- 210 (349)
T ss_dssp -------------------HHHHHHHTCCEEEEECCCC---------------SSCCGGGCCTHHHHHHHHHCTTSEE--
T ss_pred -------------------HHHHHHcCCCEEEEeccCC---------------CCCChhhcCHHHHHHHHHHCCCCCE--
Q ss_pred CCccCCCCCccccChHHHHHHHHHHcCCCeEE
Q 018330 242 SVAADEFGQSYNINADTVAGELAAALGAEKLI 273 (358)
Q Consensus 242 gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi 273 (358)
+..-...| ..++..|.++||+ +|
T Consensus 211 g~sdHt~G--------~~~~~AAvAlGA~-iI 233 (349)
T 2wqp_A 211 GLSDHTLD--------NYACLGAVALGGS-IL 233 (349)
T ss_dssp EEECCSSS--------SHHHHHHHHHTCC-EE
T ss_pred EeCCCCCc--------HHHHHHHHHhCCC-EE
No 67
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=24.93 E-value=60 Score=26.24 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=29.5
Q ss_pred CeEEEEECCcccCCCCh-----h--HHHHHHHHHHHHhHhCCCeEEEEECCh
Q 018330 94 KTIVVKYGGAAMKPNQK-----D--NLLASVVKDLVLLSVVGLRPVLVHGGG 138 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~-----~--~l~~~~~~~Ia~L~~~G~~vVLVhGgg 138 (358)
|.+++-+.|..+.+... + .+...+.+-|..|++.|++++|+.++.
T Consensus 2 k~v~~D~DGtL~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~ 53 (179)
T 3l8h_A 2 KLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQS 53 (179)
T ss_dssp CEEEECSBTTTBCCCTTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECT
T ss_pred CEEEEcCCCccccCCCccCCCHHHceECcCHHHHHHHHHHCCCEEEEEECCC
Confidence 45566677776655320 0 122456667778888999999999875
No 68
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=24.01 E-value=1.2e+02 Score=23.89 Aligned_cols=61 Identities=16% Similarity=0.283 Sum_probs=42.0
Q ss_pred CeEEEEECCcccCCCC-----h---hHHHHHHHHHHHHhHhCCCeEEEEECCh-HHHhHHHHHcCCCccc
Q 018330 94 KTIVVKYGGAAMKPNQ-----K---DNLLASVVKDLVLLSVVGLRPVLVHGGG-PEINFWLKRFGIEPVF 154 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~-----~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l~~~gi~~~~ 154 (358)
+.++.=+.|..+.+.. . ..+.....+-|..|++.|++++|+.|.. ..+...++++|+..-|
T Consensus 10 k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~ 79 (162)
T 2p9j_A 10 KLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSAPLITRLKELGVEEIY 79 (162)
T ss_dssp CEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEE
T ss_pred eEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhc
Confidence 7889999999886421 0 0111233566777888899999999884 4567778888887543
No 69
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=22.88 E-value=57 Score=25.49 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=31.1
Q ss_pred CeEEEEECCcccCCCChh----HHHHHHHHHHHHhHhCCCeEEEEECCh
Q 018330 94 KTIVVKYGGAAMKPNQKD----NLLASVVKDLVLLSVVGLRPVLVHGGG 138 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~----~l~~~~~~~Ia~L~~~G~~vVLVhGgg 138 (358)
|.++.=+.|..+.+.... .+.....+.|..+++.|++++++.|-.
T Consensus 2 k~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~l~~l~~~Gi~~~iaTGR~ 50 (126)
T 1xpj_A 2 KKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARN 50 (126)
T ss_dssp CEEEECSTTTTBCCCCSCGGGCCBCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CEEEEecCCCCCCCCCCccccCCCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 467778889888663210 122345667778888899999999764
No 70
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=21.72 E-value=1.5e+02 Score=28.57 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=46.6
Q ss_pred ChhhhHHHHHhhh-HHHHhhcCCeEEEEECCcccCCCChh--HH-HHHHHHHHHHhHhCCCeEEEEECChHHH
Q 018330 73 PAEFRVDILSESL-PFIQKFRGKTIVVKYGGAAMKPNQKD--NL-LASVVKDLVLLSVVGLRPVLVHGGGPEI 141 (358)
Q Consensus 73 ~~~~~~~~l~~a~-pyi~~~~~k~iVIKlGGs~l~~k~~~--~l-~~~~~~~Ia~L~~~G~~vVLVhGgg~~i 141 (358)
....+...|.+.+ |.++.|+-..|||-.|--+...+... .+ .+.+.+-...+.+.+.++++|-|||-..
T Consensus 236 ~d~~y~~~~~~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~~~p~l~~~gGGY~~ 308 (388)
T 3ew8_A 236 QDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNL 308 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCCh
Confidence 5678889998876 56799999999999998887764311 11 0223333344555678888887777543
No 71
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=21.71 E-value=1.2e+02 Score=23.92 Aligned_cols=54 Identities=20% Similarity=0.389 Sum_probs=36.3
Q ss_pred hcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHH-HhHHHHHcCCCc
Q 018330 91 FRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPE-INFWLKRFGIEP 152 (358)
Q Consensus 91 ~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~-i~~~l~~~gi~~ 152 (358)
|++..+||-++.-. .. .++ ..+ +..|++.|..+|=|-|+.+. ....+.+.|++.
T Consensus 45 F~~aPVVlDl~~l~-~~---~dl-~~L---~~~l~~~gl~~vGV~g~~~~~~~~~a~~~GLp~ 99 (120)
T 3ghf_A 45 LKHAPVVINVSGLE-SP---VNW-PEL---HKIVTSTGLRIIGVSGCKDASLKVEIDRMGLPL 99 (120)
T ss_dssp HTTCEEEEEEEECC-SS---CCH-HHH---HHHHHTTTCEEEEEESCCCHHHHHHHHHHTCCE
T ss_pred hCCCcEEEEccccC-Ch---HHH-HHH---HHHHHHcCCEEEEEeCCCcHHHHHHHHHCCCCc
Confidence 78999999997543 22 122 222 34466789999999988644 566677778763
No 72
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=21.28 E-value=1.2e+02 Score=25.86 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=39.9
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCCc
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIEP 152 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~~ 152 (358)
|.++.=+.|..+.++. .+.....+.|..+++.|++++++.|-.. .....++.++++.
T Consensus 4 kli~~DlDGTLl~~~~--~i~~~~~~al~~l~~~G~~v~i~TGR~~~~~~~~~~~l~~~~ 61 (231)
T 1wr8_A 4 KAISIDIDGTITYPNR--MIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSG 61 (231)
T ss_dssp CEEEEESTTTTBCTTS--CBCHHHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHHTCCS
T ss_pred eEEEEECCCCCCCCCC--cCCHHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHcCCCC
Confidence 6788999999988632 1223455667778888999999988754 3345566677653
No 73
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=20.44 E-value=3.6e+02 Score=24.47 Aligned_cols=109 Identities=17% Similarity=0.299 Sum_probs=56.0
Q ss_pred CCCeEEEcCCccCCCCCccccChHHH-HHHHHHHcCCCeEEEeec------ccccccccc--------------ccCccc
Q 018330 234 SGHIPVIASVAADEFGQSYNINADTV-AGELAAALGAEKLILLTD------VAGILENRE--------------DPMSLV 292 (358)
Q Consensus 234 ~G~IPVi~gv~~~~~G~~~~i~sD~~-Aa~lA~~L~AdkLi~lTD------V~GV~~~~~--------------dp~~lI 292 (358)
.|.+||+.|++.... .|.+ -+..|..+|||-++.++- -+|++.... .|..-=
T Consensus 79 ~grvpViaGvg~~~t-------~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg 151 (301)
T 1xky_A 79 DKRVPVIAGTGSNNT-------HASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSI 151 (301)
T ss_dssp TTSSCEEEECCCSCH-------HHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHS
T ss_pred CCCceEEeCCCCCCH-------HHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 578999999753211 2222 245578899998888753 233332110 011111
Q ss_pred ccccHHHHHHHHhCCCC-----CCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCce
Q 018330 293 KEIDIKGVKKMIEDGKV-----GGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGT 354 (358)
Q Consensus 293 ~~I~~~e~~~l~~~~~v-----tGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT 354 (358)
-.++.+.+.++.+...+ +.|-..++...++.. + +...+++|.+.. + ...+.-.+.|.
T Consensus 152 ~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~~~--~-~~f~v~~G~d~~-~-l~~l~~G~~G~ 213 (301)
T 1xky_A 152 VQISVDTVVRLSEIENIVAIKDAGGDVLTMTEIIEKT--A-DDFAVYSGDDGL-T-LPAMAVGAKGI 213 (301)
T ss_dssp SCCCHHHHHHHHTSTTEEEEEECSSCHHHHHHHHHHS--C-TTCEEEESSGGG-H-HHHHHTTCCEE
T ss_pred CCCCHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHhc--C-CCeEEEECcHHH-H-HHHHHcCCCEE
Confidence 23566677777653222 234445655544432 2 236788997653 3 33333234454
No 74
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=20.43 E-value=1e+02 Score=27.54 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=27.6
Q ss_pred HHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCCCc
Q 018330 117 VVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGIEP 152 (358)
Q Consensus 117 ~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi~~ 152 (358)
+.+.+..|+..|++++++.|| ...+...++++|+..
T Consensus 146 ~~e~i~~l~~~gi~v~ivSgg~~~~i~~i~~~~g~~~ 182 (297)
T 4fe3_A 146 YENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYH 182 (297)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCeEEEEeCCcHHHHHHHHHHcCCCc
Confidence 455566788899999999998 556677788887653
No 75
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=20.22 E-value=2.4e+02 Score=27.10 Aligned_cols=121 Identities=21% Similarity=0.222 Sum_probs=0.0
Q ss_pred HhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccC
Q 018330 82 SESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVT 161 (358)
Q Consensus 82 ~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt 161 (358)
.+++.++..+ ..=++|+|..-+++ ..+++.++.. .++||+.=|..-+..+...
T Consensus 124 ~~svd~l~~~--~vd~~KIgS~~~~N-------~pLL~~va~~----gKPViLStGmaTl~Ei~~A-------------- 176 (385)
T 1vli_A 124 EGSADLLQST--SPSAFKIASYEINH-------LPLLKYVARL----NRPMIFSTAGAEISDVHEA-------------- 176 (385)
T ss_dssp HHHHHHHHTT--CCSCEEECGGGTTC-------HHHHHHHHTT----CSCEEEECTTCCHHHHHHH--------------
T ss_pred HHHHHHHHhc--CCCEEEECcccccC-------HHHHHHHHhc----CCeEEEECCCCCHHHHHHH--------------
Q ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCC-CeEEE
Q 018330 162 DANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSG-HIPVI 240 (358)
Q Consensus 162 ~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G-~IPVi 240 (358)
++.+.+.|..-+-|. ..+++.|.+. ..+|...|..|-+.- .+||
T Consensus 177 --------------------ve~i~~~Gn~~iiLl----hc~s~YPtp~----------~~~nL~aI~~Lk~~f~~lpV- 221 (385)
T 1vli_A 177 --------------------WRTIRAEGNNQIAIM----HCVAKYPAPP----------EYSNLSVIPMLAAAFPEAVI- 221 (385)
T ss_dssp --------------------HHHHHTTTCCCEEEE----EECSSSSCCG----------GGCCTTHHHHHHHHSTTSEE-
T ss_pred --------------------HHHHHHCCCCcEEEE----eccCCCCCCh----------hhcCHHHHHHHHHHcCCCCE-
Q ss_pred cCCccCCCCCccccChHHHHHHHHHHcCCCeEE
Q 018330 241 ASVAADEFGQSYNINADTVAGELAAALGAEKLI 273 (358)
Q Consensus 241 ~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi 273 (358)
+..-...|. ..++..|.++||+ +|
T Consensus 222 -G~SdHt~G~-------~~~~~AAvAlGA~-iI 245 (385)
T 1vli_A 222 -GFSDHSEHP-------TEAPCAAVRLGAK-LI 245 (385)
T ss_dssp -EEEECCSSS-------SHHHHHHHHTTCS-EE
T ss_pred -EeCCCCCCc-------hHHHHHHHHcCCC-EE
No 76
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=20.04 E-value=1.1e+02 Score=26.94 Aligned_cols=56 Identities=21% Similarity=0.380 Sum_probs=40.7
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCC
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIE 151 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~ 151 (358)
|.++.=+.|..+.++.. +-+...+.|..+++.|++++++.|-.. .+...++.+++.
T Consensus 6 kli~~DlDGTLl~~~~~--i~~~~~~aL~~l~~~Gi~vviaTGR~~~~~~~~~~~l~l~ 62 (282)
T 1rkq_A 6 KLIAIDMDGTLLLPDHT--ISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHME 62 (282)
T ss_dssp CEEEECCCCCCSCTTSC--CCHHHHHHHHHHHHTTCEEEEECSSCGGGTHHHHHHTTCC
T ss_pred eEEEEeCCCCCCCCCCc--CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 68889999999987431 223456667778889999999998754 345667788775
Done!