Query 018332
Match_columns 358
No_of_seqs 382 out of 3358
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:07:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03009 TryX_like_TryX_NRX Try 99.9 1.8E-24 4E-29 173.6 12.8 129 154-283 2-131 (131)
2 cd03008 TryX_like_RdCVF Trypar 99.9 2.2E-24 4.9E-29 173.4 10.2 120 161-280 16-141 (146)
3 cd02964 TryX_like_family Trypa 99.9 8.8E-23 1.9E-27 163.9 12.1 122 161-283 8-132 (132)
4 KOG2501 Thioredoxin, nucleored 99.8 2.2E-20 4.7E-25 148.5 11.9 121 157-278 19-142 (157)
5 PF08534 Redoxin: Redoxin; In 99.8 7.3E-20 1.6E-24 149.7 11.3 117 147-268 2-131 (146)
6 PF13905 Thioredoxin_8: Thiore 99.8 9.4E-20 2E-24 137.7 10.7 93 170-264 1-95 (95)
7 cd02967 mauD Methylamine utili 99.8 1.7E-19 3.7E-24 141.0 12.0 110 152-268 1-112 (114)
8 PRK14018 trifunctional thiored 99.8 4.6E-19 1E-23 169.5 14.4 115 148-267 35-155 (521)
9 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 3.2E-19 6.9E-24 141.6 9.0 116 147-267 1-124 (124)
10 PRK15412 thiol:disulfide inter 99.8 4.5E-19 9.8E-24 150.5 10.4 116 145-268 39-159 (185)
11 PTZ00102 disulphide isomerase; 99.8 2.3E-18 4.9E-23 168.0 14.9 94 169-301 374-467 (477)
12 cd03010 TlpA_like_DsbE TlpA-li 99.8 9.2E-19 2E-23 139.6 9.8 112 150-267 2-116 (127)
13 cd02969 PRX_like1 Peroxiredoxi 99.8 3.8E-18 8.2E-23 143.3 13.8 146 148-303 1-156 (171)
14 PLN02399 phospholipid hydroper 99.8 2.5E-18 5.4E-23 149.4 12.5 120 145-268 73-217 (236)
15 cd03012 TlpA_like_DipZ_like Tl 99.8 1.3E-18 2.8E-23 138.5 9.7 105 160-268 13-122 (126)
16 PRK03147 thiol-disulfide oxido 99.8 4.1E-18 8.8E-23 143.4 13.2 118 146-267 36-154 (173)
17 PLN02412 probable glutathione 99.8 2.1E-18 4.6E-23 143.8 10.6 116 149-268 7-147 (167)
18 TIGR00385 dsbE periplasmic pro 99.8 3.3E-18 7.1E-23 143.8 10.9 116 145-268 34-154 (173)
19 TIGR02661 MauD methylamine deh 99.8 8.8E-18 1.9E-22 143.0 13.2 113 146-267 47-162 (189)
20 TIGR02187 GlrX_arch Glutaredox 99.8 4E-18 8.8E-23 148.2 11.3 172 39-263 16-197 (215)
21 cd00340 GSH_Peroxidase Glutath 99.8 2.2E-18 4.8E-23 141.7 8.6 113 151-268 2-139 (152)
22 PTZ00056 glutathione peroxidas 99.8 5.1E-18 1.1E-22 145.2 11.0 118 147-268 15-161 (199)
23 PRK00522 tpx lipid hydroperoxi 99.7 1.4E-17 2.9E-22 139.0 11.9 116 147-268 20-147 (167)
24 cd03014 PRX_Atyp2cys Peroxired 99.7 1.9E-17 4E-22 134.9 12.0 116 147-268 2-126 (143)
25 cd03015 PRX_Typ2cys Peroxiredo 99.7 3.5E-17 7.5E-22 137.6 13.4 119 147-268 1-136 (173)
26 TIGR03137 AhpC peroxiredoxin. 99.7 2.7E-17 5.9E-22 139.7 12.3 120 146-268 3-135 (187)
27 KOG0190 Protein disulfide isom 99.7 2.7E-17 5.9E-22 154.5 12.9 58 41-98 41-98 (493)
28 PRK09437 bcp thioredoxin-depen 99.7 2.6E-17 5.7E-22 135.8 11.0 116 147-267 6-135 (154)
29 cd03017 PRX_BCP Peroxiredoxin 99.7 2.8E-17 6.2E-22 133.3 11.0 113 150-267 2-125 (140)
30 PRK10382 alkyl hydroperoxide r 99.7 7.3E-17 1.6E-21 136.2 12.5 120 146-268 3-135 (187)
31 cd03018 PRX_AhpE_like Peroxire 99.7 6.5E-17 1.4E-21 132.6 11.9 117 147-268 3-130 (149)
32 PTZ00256 glutathione peroxidas 99.7 7.7E-17 1.7E-21 136.5 12.5 117 148-268 17-164 (183)
33 cd02966 TlpA_like_family TlpA- 99.7 8.4E-17 1.8E-21 125.2 10.6 110 154-267 2-113 (116)
34 TIGR02540 gpx7 putative glutat 99.7 8.5E-17 1.8E-21 132.5 10.8 112 153-268 4-136 (153)
35 KOG0191 Thioredoxin/protein di 99.7 5.3E-17 1.1E-21 153.5 10.3 175 41-263 46-230 (383)
36 PRK13190 putative peroxiredoxi 99.7 3.8E-16 8.2E-21 134.2 12.9 118 147-268 4-133 (202)
37 cd02971 PRX_family Peroxiredox 99.7 3.2E-16 6.9E-21 127.1 11.5 114 151-268 2-126 (140)
38 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 2.3E-16 5E-21 125.0 10.4 106 152-267 1-108 (123)
39 PRK13599 putative peroxiredoxi 99.7 5.7E-16 1.2E-20 133.8 12.5 119 146-267 3-134 (215)
40 cd02968 SCO SCO (an acronym fo 99.7 5.2E-16 1.1E-20 126.1 11.5 116 151-267 2-139 (142)
41 PRK15000 peroxidase; Provision 99.7 8.2E-16 1.8E-20 131.6 12.7 120 146-268 3-141 (200)
42 COG1225 Bcp Peroxiredoxin [Pos 99.7 1.4E-15 2.9E-20 122.5 12.7 116 147-267 6-135 (157)
43 TIGR01626 ytfJ_HI0045 conserve 99.7 6.9E-16 1.5E-20 128.6 10.8 119 160-298 49-182 (184)
44 cd02950 TxlA TRX-like protein 99.7 1.5E-15 3.2E-20 123.0 12.3 97 168-303 18-114 (142)
45 PLN02919 haloacid dehalogenase 99.7 7.2E-16 1.6E-20 161.4 13.0 117 147-267 393-518 (1057)
46 cd02970 PRX_like2 Peroxiredoxi 99.6 8.1E-16 1.8E-20 126.0 9.7 113 151-268 2-146 (149)
47 PRK13191 putative peroxiredoxi 99.6 3.6E-15 7.9E-20 128.9 13.0 119 146-268 8-140 (215)
48 cd03016 PRX_1cys Peroxiredoxin 99.6 4.1E-15 8.9E-20 128.0 13.1 118 147-268 1-133 (203)
49 PTZ00137 2-Cys peroxiredoxin; 99.6 3.1E-15 6.8E-20 131.7 12.6 121 145-268 68-204 (261)
50 PRK13728 conjugal transfer pro 99.6 9.4E-16 2E-20 127.0 8.6 96 149-266 53-151 (181)
51 cd03009 TryX_like_TryX_NRX Try 99.6 1.2E-15 2.6E-20 122.3 8.0 97 26-122 1-102 (131)
52 PTZ00253 tryparedoxin peroxida 99.6 9.7E-15 2.1E-19 125.4 13.9 119 146-267 7-142 (199)
53 cd03008 TryX_like_RdCVF Trypar 99.6 2.8E-15 6.2E-20 120.7 8.0 89 35-123 18-116 (146)
54 PRK13189 peroxiredoxin; Provis 99.6 1.8E-14 4E-19 125.3 13.3 118 146-267 10-141 (222)
55 KOG0910 Thioredoxin-like prote 99.6 1.1E-14 2.4E-19 114.9 9.3 77 169-280 60-136 (150)
56 cd02954 DIM1 Dim1 family; Dim1 99.6 1.7E-14 3.7E-19 110.6 9.8 72 169-268 13-84 (114)
57 cd02985 TRX_CDSP32 TRX family, 99.6 4.4E-14 9.5E-19 108.1 10.8 74 168-267 13-86 (103)
58 TIGR01130 ER_PDI_fam protein d 99.6 7.6E-14 1.7E-18 135.6 15.2 58 41-98 17-74 (462)
59 PRK10606 btuE putative glutath 99.5 2.9E-13 6.3E-18 113.6 14.8 73 150-226 4-84 (183)
60 cd02964 TryX_like_family Trypa 99.5 2.3E-14 5E-19 114.9 7.6 97 27-123 2-103 (132)
61 PHA02278 thioredoxin-like prot 99.5 8.8E-14 1.9E-18 105.8 9.3 75 169-267 13-87 (103)
62 TIGR02738 TrbB type-F conjugat 99.5 1.1E-13 2.4E-18 112.8 10.3 80 170-266 50-133 (153)
63 KOG2501 Thioredoxin, nucleored 99.5 2.3E-14 5E-19 114.2 6.1 97 26-122 15-118 (157)
64 cd02948 TRX_NDPK TRX domain, T 99.5 1.9E-13 4.2E-18 104.4 10.2 71 169-267 16-86 (102)
65 cd02963 TRX_DnaJ TRX domain, D 99.5 1.8E-13 4E-18 106.1 10.1 73 168-267 22-94 (111)
66 cd02956 ybbN ybbN protein fami 99.5 3.7E-13 8.1E-18 101.6 10.0 71 169-267 11-81 (96)
67 cd02999 PDI_a_ERp44_like PDIa 99.5 1.9E-13 4.2E-18 103.8 8.4 69 166-261 14-82 (100)
68 KOG0907 Thioredoxin [Posttrans 99.5 3.7E-13 8E-18 102.4 9.5 69 170-267 21-89 (106)
69 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 7.7E-13 1.7E-17 100.9 9.4 72 168-267 16-87 (101)
70 cd02951 SoxW SoxW family; SoxW 99.4 1E-12 2.2E-17 104.3 10.2 85 169-267 12-101 (125)
71 KOG0908 Thioredoxin-like prote 99.4 2.7E-13 5.8E-18 114.6 7.0 89 168-300 19-107 (288)
72 PRK09381 trxA thioredoxin; Pro 99.4 1.9E-12 4E-17 100.2 10.8 71 169-267 20-90 (109)
73 COG3118 Thioredoxin domain-con 99.4 7E-13 1.5E-17 115.9 9.0 70 169-266 42-111 (304)
74 cd02953 DsbDgamma DsbD gamma f 99.4 1.3E-12 2.8E-17 100.2 9.4 76 169-267 10-89 (104)
75 COG0450 AhpC Peroxiredoxin [Po 99.4 3.1E-12 6.7E-17 105.3 11.8 120 145-267 3-139 (194)
76 cd02999 PDI_a_ERp44_like PDIa 99.4 1.2E-13 2.6E-18 105.0 2.9 64 38-124 14-77 (100)
77 PRK14018 trifunctional thiored 99.4 1.1E-12 2.3E-17 126.1 10.0 96 24-123 38-143 (521)
78 cd03006 PDI_a_EFP1_N PDIa fami 99.4 6.3E-13 1.4E-17 102.8 6.1 62 40-124 27-89 (113)
79 PRK10996 thioredoxin 2; Provis 99.4 4.5E-12 9.8E-17 102.3 11.0 71 169-267 51-121 (139)
80 cd02959 ERp19 Endoplasmic reti 99.4 1.1E-12 2.3E-17 102.6 7.1 76 166-267 15-92 (117)
81 cd02967 mauD Methylamine utili 99.4 2E-12 4.4E-17 100.8 8.5 64 28-95 5-70 (114)
82 TIGR02740 TraF-like TraF-like 99.4 1.9E-12 4E-17 115.9 9.1 88 161-266 157-244 (271)
83 cd03013 PRX5_like Peroxiredoxi 99.4 4.1E-12 8.9E-17 104.5 10.4 117 147-268 1-137 (155)
84 cd03006 PDI_a_EFP1_N PDIa fami 99.4 2.5E-12 5.5E-17 99.4 8.5 68 169-264 28-96 (113)
85 PF13098 Thioredoxin_2: Thiore 99.4 2.8E-12 6.1E-17 99.7 8.9 95 169-267 4-98 (112)
86 PF13905 Thioredoxin_8: Thiore 99.4 1.6E-12 3.4E-17 97.9 7.2 80 42-122 1-85 (95)
87 cd03010 TlpA_like_DsbE TlpA-li 99.4 1.9E-12 4.2E-17 103.0 8.1 93 25-122 4-103 (127)
88 cd02962 TMX2 TMX2 family; comp 99.4 4.2E-12 9.1E-17 103.3 9.4 73 169-268 46-124 (152)
89 cd02957 Phd_like Phosducin (Ph 99.4 2.8E-12 6E-17 99.9 7.9 68 170-267 24-91 (113)
90 cd03012 TlpA_like_DipZ_like Tl 99.3 2E-12 4.3E-17 102.8 6.9 88 33-122 13-108 (126)
91 cd02986 DLP Dim1 family, Dim1- 99.3 3.7E-12 8.1E-17 96.9 7.9 69 169-265 13-81 (114)
92 cd02985 TRX_CDSP32 TRX family, 99.3 1.3E-12 2.7E-17 100.0 5.3 64 39-123 12-75 (103)
93 KOG0910 Thioredoxin-like prote 99.3 5.7E-13 1.2E-17 105.3 3.3 60 41-123 60-119 (150)
94 cd02994 PDI_a_TMX PDIa family, 99.3 1.2E-11 2.6E-16 94.2 10.4 68 169-264 16-83 (101)
95 cd03003 PDI_a_ERdj5_N PDIa fam 99.3 1.3E-12 2.8E-17 99.6 5.0 61 40-123 16-76 (101)
96 cd02992 PDI_a_QSOX PDIa family 99.3 1.2E-11 2.6E-16 96.3 10.4 77 170-269 19-95 (114)
97 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 5.9E-12 1.3E-16 96.5 8.5 72 169-267 18-89 (104)
98 cd02989 Phd_like_TxnDC9 Phosdu 99.3 1.7E-11 3.6E-16 95.3 10.9 70 169-267 21-90 (113)
99 cd02954 DIM1 Dim1 family; Dim1 99.3 2.4E-12 5.2E-17 98.7 5.9 59 41-122 13-71 (114)
100 cd03002 PDI_a_MPD1_like PDI fa 99.3 9.1E-12 2E-16 96.2 9.2 70 169-263 17-86 (109)
101 PF08534 Redoxin: Redoxin; In 99.3 6.7E-12 1.5E-16 102.4 8.8 87 29-118 14-104 (146)
102 PRK03147 thiol-disulfide oxido 99.3 7.2E-12 1.6E-16 105.3 9.1 95 26-122 43-141 (173)
103 cd03065 PDI_b_Calsequestrin_N 99.3 1.7E-11 3.7E-16 95.5 10.4 72 170-267 27-102 (120)
104 cd02965 HyaE HyaE family; HyaE 99.3 1.3E-11 2.9E-16 94.0 9.3 71 169-267 26-98 (111)
105 cd03000 PDI_a_TMX3 PDIa family 99.3 2.2E-11 4.9E-16 93.3 10.8 70 169-263 14-83 (104)
106 cd02949 TRX_NTR TRX domain, no 99.3 2.2E-11 4.7E-16 92.1 10.1 71 169-267 12-82 (97)
107 PF00085 Thioredoxin: Thioredo 99.3 3E-11 6.4E-16 92.1 10.9 70 170-267 17-86 (103)
108 cd02993 PDI_a_APS_reductase PD 99.3 9.6E-12 2.1E-16 96.2 8.0 71 169-264 20-91 (109)
109 cd03005 PDI_a_ERp46 PDIa famil 99.3 1.1E-11 2.4E-16 94.5 8.2 71 172-267 18-88 (102)
110 cd02963 TRX_DnaJ TRX domain, D 99.3 5.5E-12 1.2E-16 97.8 5.8 63 39-123 21-83 (111)
111 PLN00410 U5 snRNP protein, DIM 99.3 4.2E-11 9.2E-16 95.5 10.8 71 169-267 22-94 (142)
112 cd02996 PDI_a_ERp44 PDIa famil 99.3 2.6E-11 5.7E-16 93.6 9.4 72 169-264 17-90 (108)
113 PRK15412 thiol:disulfide inter 99.3 1.6E-11 3.5E-16 104.2 8.6 99 18-122 38-145 (185)
114 TIGR01126 pdi_dom protein disu 99.3 2.8E-11 6E-16 92.2 9.0 70 169-263 12-81 (102)
115 PHA02278 thioredoxin-like prot 99.3 5.7E-12 1.2E-16 95.8 5.1 63 41-122 13-75 (103)
116 PTZ00056 glutathione peroxidas 99.3 1.4E-11 3.1E-16 105.5 8.0 60 25-86 20-81 (199)
117 PLN02412 probable glutathione 99.3 1.4E-11 3.1E-16 102.6 7.8 60 25-86 10-71 (167)
118 PF00578 AhpC-TSA: AhpC/TSA fa 99.3 1.8E-11 3.8E-16 96.9 7.9 93 23-118 4-101 (124)
119 PF02630 SCO1-SenC: SCO1/SenC; 99.3 7.9E-11 1.7E-15 98.8 12.2 120 147-267 28-170 (174)
120 cd02966 TlpA_like_family TlpA- 99.2 3.8E-11 8.3E-16 93.0 8.6 93 28-122 4-100 (116)
121 TIGR01068 thioredoxin thioredo 99.2 9.4E-11 2E-15 89.0 10.5 70 170-267 14-83 (101)
122 cd02997 PDI_a_PDIR PDIa family 99.2 5.5E-11 1.2E-15 90.9 9.2 75 169-267 16-90 (104)
123 cd00340 GSH_Peroxidase Glutath 99.2 2.6E-11 5.7E-16 99.6 7.6 56 28-86 7-63 (152)
124 cd02984 TRX_PICOT TRX domain, 99.2 5.3E-11 1.2E-15 89.9 8.4 70 170-267 14-83 (97)
125 cd03004 PDI_a_ERdj5_C PDIa fam 99.2 1.7E-11 3.8E-16 93.9 5.7 60 41-123 18-77 (104)
126 cd02956 ybbN ybbN protein fami 99.2 1.8E-11 3.9E-16 92.3 5.7 61 40-123 10-70 (96)
127 cd02996 PDI_a_ERp44 PDIa famil 99.2 2.3E-11 5E-16 93.9 6.4 63 41-123 17-82 (108)
128 cd02948 TRX_NDPK TRX domain, T 99.2 1.9E-11 4.2E-16 93.3 5.9 59 41-122 16-74 (102)
129 cd02987 Phd_like_Phd Phosducin 99.2 4.8E-11 1E-15 99.9 8.7 68 170-267 83-150 (175)
130 cd03000 PDI_a_TMX3 PDIa family 99.2 1.3E-11 2.7E-16 94.7 4.7 64 41-124 14-77 (104)
131 PTZ00443 Thioredoxin domain-co 99.2 7.3E-11 1.6E-15 102.1 9.8 70 170-267 52-121 (224)
132 cd02950 TxlA TRX-like protein 99.2 1.9E-11 4E-16 99.0 5.7 63 40-123 18-80 (142)
133 PTZ00051 thioredoxin; Provisio 99.2 4.2E-11 9.1E-16 90.6 7.3 70 169-267 17-86 (98)
134 cd03011 TlpA_like_ScsD_MtbDsbE 99.2 3.5E-11 7.7E-16 95.1 7.1 88 28-122 5-96 (123)
135 TIGR02540 gpx7 putative glutat 99.2 4.6E-11 9.9E-16 98.3 7.8 56 28-85 7-63 (153)
136 cd03002 PDI_a_MPD1_like PDI fa 99.2 2.4E-11 5.2E-16 93.9 5.3 62 41-123 17-78 (109)
137 cd02993 PDI_a_APS_reductase PD 99.2 3.8E-11 8.2E-16 92.8 6.0 63 40-123 19-82 (109)
138 cd02952 TRP14_like Human TRX-r 99.2 6.3E-11 1.4E-15 92.0 7.0 79 169-267 20-106 (119)
139 cd02992 PDI_a_QSOX PDIa family 99.2 4.7E-11 1E-15 93.0 6.3 64 42-123 19-82 (114)
140 cd02955 SSP411 TRX domain, SSP 99.2 6.1E-10 1.3E-14 87.4 12.4 85 166-269 11-98 (124)
141 KOG0907 Thioredoxin [Posttrans 99.2 2.5E-11 5.5E-16 92.4 4.4 64 36-123 15-78 (106)
142 TIGR00385 dsbE periplasmic pro 99.2 1E-10 2.3E-15 98.2 8.3 95 22-122 38-140 (173)
143 cd03001 PDI_a_P5 PDIa family, 99.2 3.4E-10 7.5E-15 86.3 10.1 65 170-261 18-82 (103)
144 PLN02399 phospholipid hydroper 99.2 1.1E-10 2.3E-15 101.8 8.0 62 23-86 78-141 (236)
145 TIGR02661 MauD methylamine deh 99.1 1.5E-10 3.3E-15 98.5 8.7 70 23-98 51-124 (189)
146 cd03005 PDI_a_ERp46 PDIa famil 99.1 5.5E-11 1.2E-15 90.6 5.3 60 44-123 18-77 (102)
147 cd02994 PDI_a_TMX PDIa family, 99.1 7.7E-11 1.7E-15 89.7 5.9 60 41-123 16-75 (101)
148 cd02969 PRX_like1 Peroxiredoxi 99.1 1.4E-10 3.1E-15 97.2 8.0 60 26-87 6-68 (171)
149 cd02986 DLP Dim1 family, Dim1- 99.1 7E-11 1.5E-15 89.9 5.4 60 41-123 13-72 (114)
150 cd02998 PDI_a_ERp38 PDIa famil 99.1 2.9E-10 6.2E-15 87.0 8.8 72 170-265 18-89 (105)
151 cd02961 PDI_a_family Protein D 99.1 1.7E-10 3.7E-15 87.2 7.3 72 169-265 14-85 (101)
152 KOG0190 Protein disulfide isom 99.1 8E-11 1.7E-15 111.2 5.9 73 6-90 356-429 (493)
153 cd02975 PfPDO_like_N Pyrococcu 99.1 7.2E-10 1.6E-14 86.1 10.3 64 170-261 22-85 (113)
154 cd02962 TMX2 TMX2 family; comp 99.1 1E-10 2.2E-15 95.2 5.6 49 40-90 45-93 (152)
155 cd02988 Phd_like_VIAF Phosduci 99.1 3.1E-10 6.6E-15 96.3 8.7 88 170-296 102-189 (192)
156 PLN00410 U5 snRNP protein, DIM 99.1 1.2E-10 2.6E-15 92.9 5.7 48 40-90 21-68 (142)
157 cd02968 SCO SCO (an acronym fo 99.1 1.7E-10 3.8E-15 93.5 6.4 73 25-97 3-82 (142)
158 PRK00522 tpx lipid hydroperoxi 99.1 1.8E-10 4E-15 96.0 6.6 93 24-121 24-123 (167)
159 PTZ00062 glutaredoxin; Provisi 99.1 1.5E-09 3.2E-14 92.5 12.0 30 43-72 18-47 (204)
160 cd03017 PRX_BCP Peroxiredoxin 99.1 3.1E-10 6.6E-15 91.8 7.3 94 25-121 4-102 (140)
161 PTZ00256 glutathione peroxidas 99.1 3.4E-10 7.4E-15 95.9 7.8 60 25-86 21-83 (183)
162 COG1999 Uncharacterized protei 99.1 4.8E-09 1E-13 90.2 14.7 115 153-267 49-186 (207)
163 KOG4277 Uncharacterized conser 99.1 3E-11 6.6E-16 104.8 0.8 64 42-125 43-106 (468)
164 COG3118 Thioredoxin domain-con 99.1 8.2E-11 1.8E-15 103.1 3.3 51 37-90 38-88 (304)
165 PF00085 Thioredoxin: Thioredo 99.0 3.8E-10 8.3E-15 85.9 5.8 60 41-123 16-75 (103)
166 PTZ00062 glutaredoxin; Provisi 99.0 9.1E-10 2E-14 93.8 8.5 60 171-267 18-77 (204)
167 cd03014 PRX_Atyp2cys Peroxired 99.0 4.1E-10 8.9E-15 91.5 6.1 61 24-88 6-69 (143)
168 PRK09381 trxA thioredoxin; Pro 99.0 4.7E-10 1E-14 86.7 6.2 59 41-122 20-78 (109)
169 cd03018 PRX_AhpE_like Peroxire 99.0 7.8E-10 1.7E-14 90.4 7.8 65 28-95 12-79 (149)
170 PRK09437 bcp thioredoxin-depen 99.0 7E-10 1.5E-14 91.3 7.6 92 25-119 11-107 (154)
171 cd02953 DsbDgamma DsbD gamma f 99.0 7E-10 1.5E-14 84.9 6.7 66 40-124 9-77 (104)
172 PTZ00443 Thioredoxin domain-co 99.0 3E-10 6.5E-15 98.3 5.2 59 42-123 52-110 (224)
173 cd02971 PRX_family Peroxiredox 99.0 8.8E-10 1.9E-14 89.1 7.6 91 28-121 7-102 (140)
174 TIGR01295 PedC_BrcD bacterioci 99.0 1.3E-09 2.8E-14 85.7 8.2 79 169-267 22-105 (122)
175 TIGR03137 AhpC peroxiredoxin. 99.0 4.6E-10 9.9E-15 95.4 5.9 67 20-88 4-76 (187)
176 PRK10606 btuE putative glutath 99.0 1E-09 2.2E-14 92.3 7.5 56 28-86 10-66 (183)
177 cd03015 PRX_Typ2cys Peroxiredo 99.0 1.1E-09 2.4E-14 92.0 7.8 92 25-118 6-112 (173)
178 TIGR00424 APS_reduc 5'-adenyly 99.0 1.3E-09 2.7E-14 103.8 9.0 68 169-260 370-437 (463)
179 PRK13728 conjugal transfer pro 99.0 1.2E-09 2.5E-14 90.8 7.5 55 24-88 55-110 (181)
180 TIGR00411 redox_disulf_1 small 99.0 4.9E-09 1.1E-13 76.4 10.1 62 173-264 2-63 (82)
181 TIGR00424 APS_reduc 5'-adenyly 99.0 3.5E-10 7.7E-15 107.5 5.0 66 39-124 368-433 (463)
182 cd03001 PDI_a_P5 PDIa family, 99.0 6.8E-10 1.5E-14 84.7 5.6 59 42-123 18-76 (103)
183 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 1.3E-09 2.9E-14 83.1 7.2 67 170-262 18-84 (104)
184 PRK10996 thioredoxin 2; Provis 99.0 8.1E-10 1.8E-14 89.1 6.2 60 41-123 51-110 (139)
185 COG1225 Bcp Peroxiredoxin [Pos 99.0 1.7E-09 3.6E-14 87.4 7.2 95 22-119 8-107 (157)
186 TIGR02187 GlrX_arch Glutaredox 99.0 1.3E-09 2.8E-14 94.8 6.9 70 169-265 18-90 (215)
187 cd02997 PDI_a_PDIR PDIa family 99.0 1.1E-09 2.4E-14 83.6 5.4 64 41-123 16-79 (104)
188 PLN02919 haloacid dehalogenase 98.9 1.5E-09 3.3E-14 114.3 8.0 90 31-122 407-505 (1057)
189 cd02947 TRX_family TRX family; 98.9 7.2E-09 1.6E-13 76.7 9.3 68 171-267 11-78 (93)
190 PRK00293 dipZ thiol:disulfide 98.9 5.2E-09 1.1E-13 103.5 10.6 74 168-265 472-548 (571)
191 cd02970 PRX_like2 Peroxiredoxi 98.9 2.5E-09 5.3E-14 87.3 7.0 91 26-119 4-100 (149)
192 KOG2792 Putative cytochrome C 98.9 1.2E-08 2.6E-13 87.3 11.1 119 152-270 120-260 (280)
193 KOG0191 Thioredoxin/protein di 98.9 5.2E-10 1.1E-14 105.9 3.2 136 42-198 162-315 (383)
194 cd02995 PDI_a_PDI_a'_C PDIa fa 98.9 1.7E-09 3.8E-14 82.5 5.5 61 41-123 17-77 (104)
195 TIGR01126 pdi_dom protein disu 98.9 1.7E-09 3.8E-14 82.1 5.5 62 41-123 12-73 (102)
196 TIGR01626 ytfJ_HI0045 conserve 98.9 2.5E-09 5.3E-14 89.4 6.7 102 16-123 29-149 (184)
197 cd02957 Phd_like Phosducin (Ph 98.9 1.6E-09 3.5E-14 84.3 5.1 57 42-123 24-80 (113)
198 cd02998 PDI_a_ERp38 PDIa famil 98.9 2.5E-09 5.4E-14 81.7 6.1 63 41-123 17-79 (105)
199 TIGR02738 TrbB type-F conjugat 98.9 1.6E-09 3.4E-14 88.5 4.8 47 33-88 44-91 (153)
200 KOG0908 Thioredoxin-like prote 98.9 1.2E-09 2.5E-14 92.8 4.1 64 35-122 14-77 (288)
201 COG0386 BtuE Glutathione perox 98.9 3.6E-08 7.8E-13 77.9 12.0 111 153-267 7-142 (162)
202 cd02959 ERp19 Endoplasmic reti 98.9 1.7E-09 3.6E-14 84.5 4.3 52 35-89 12-63 (117)
203 cd02949 TRX_NTR TRX domain, no 98.9 3.2E-09 6.9E-14 80.1 5.8 60 41-123 12-71 (97)
204 cd02951 SoxW SoxW family; SoxW 98.9 2.5E-09 5.3E-14 84.8 5.3 73 40-122 11-87 (125)
205 cd02984 TRX_PICOT TRX domain, 98.9 3.2E-09 7E-14 80.0 5.7 59 42-123 14-72 (97)
206 PTZ00051 thioredoxin; Provisio 98.9 2.6E-09 5.7E-14 80.7 4.9 59 41-123 17-75 (98)
207 PRK10382 alkyl hydroperoxide r 98.9 5.1E-09 1.1E-13 88.5 7.1 80 35-117 24-110 (187)
208 cd02960 AGR Anterior Gradient 98.9 8.9E-09 1.9E-13 80.8 7.8 101 167-299 20-123 (130)
209 PLN02309 5'-adenylylsulfate re 98.9 1.4E-08 3.1E-13 96.6 10.7 68 169-261 364-432 (457)
210 cd02952 TRP14_like Human TRX-r 98.8 3.9E-09 8.4E-14 82.0 5.2 69 40-124 19-95 (119)
211 cd02989 Phd_like_TxnDC9 Phosdu 98.8 1.1E-08 2.3E-13 79.5 7.7 51 41-95 21-71 (113)
212 PRK13190 putative peroxiredoxi 98.8 5.9E-09 1.3E-13 89.6 6.8 64 23-88 7-72 (202)
213 PRK13599 putative peroxiredoxi 98.8 5.9E-09 1.3E-13 90.2 6.7 97 19-117 3-109 (215)
214 PTZ00102 disulphide isomerase; 98.8 9E-09 2E-13 100.6 8.9 72 169-264 48-119 (477)
215 cd03065 PDI_b_Calsequestrin_N 98.8 3.4E-09 7.5E-14 82.6 4.7 61 42-124 27-92 (120)
216 KOG0912 Thiol-disulfide isomer 98.8 2.6E-09 5.6E-14 93.2 4.4 91 42-150 13-105 (375)
217 TIGR01068 thioredoxin thioredo 98.8 5.5E-09 1.2E-13 79.1 5.7 58 42-122 14-71 (101)
218 PLN02309 5'-adenylylsulfate re 98.8 4.2E-09 9.2E-14 100.2 5.9 63 41-124 364-427 (457)
219 KOG0852 Alkyl hydroperoxide re 98.8 7.3E-08 1.6E-12 77.5 11.5 115 150-267 9-139 (196)
220 cd02973 TRX_GRX_like Thioredox 98.8 3.1E-08 6.7E-13 69.2 8.2 63 174-267 3-65 (67)
221 cd02958 UAS UAS family; UAS is 98.8 6.5E-08 1.4E-12 75.3 10.8 76 167-267 14-93 (114)
222 TIGR01130 ER_PDI_fam protein d 98.8 3.1E-08 6.8E-13 96.3 11.1 71 169-264 17-87 (462)
223 cd02965 HyaE HyaE family; HyaE 98.8 6.7E-09 1.5E-13 79.2 4.9 60 41-123 26-87 (111)
224 PRK15000 peroxidase; Provision 98.8 1.1E-08 2.3E-13 87.8 6.7 94 22-117 6-116 (200)
225 KOG1731 FAD-dependent sulfhydr 98.8 1.1E-09 2.4E-14 103.4 -0.1 64 43-124 58-121 (606)
226 PHA02125 thioredoxin-like prot 98.8 2.2E-08 4.8E-13 71.6 6.5 57 174-267 2-58 (75)
227 TIGR00412 redox_disulf_2 small 98.8 3.3E-08 7.2E-13 70.9 7.4 60 175-267 3-62 (76)
228 cd02961 PDI_a_family Protein D 98.7 1.6E-08 3.4E-13 76.3 5.6 62 41-123 14-75 (101)
229 KOG4277 Uncharacterized conser 98.7 7.1E-09 1.5E-13 90.3 3.9 79 171-273 44-122 (468)
230 cd02982 PDI_b'_family Protein 98.7 3E-08 6.5E-13 75.6 6.9 64 170-260 12-77 (103)
231 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 6.1E-08 1.3E-12 71.6 8.2 71 166-267 8-78 (89)
232 cd02975 PfPDO_like_N Pyrococcu 98.7 3.7E-08 8.1E-13 76.5 7.4 58 42-123 22-79 (113)
233 PRK13191 putative peroxiredoxi 98.7 2.1E-08 4.6E-13 86.8 6.5 96 20-117 9-114 (215)
234 cd03007 PDI_a_ERp29_N PDIa fam 98.7 5.5E-08 1.2E-12 75.0 7.8 70 169-262 17-90 (116)
235 PTZ00137 2-Cys peroxiredoxin; 98.7 2.3E-08 5E-13 88.4 6.4 96 20-117 70-180 (261)
236 TIGR02740 TraF-like TraF-like 98.7 1.1E-08 2.4E-13 91.6 4.3 75 35-123 159-233 (271)
237 cd03016 PRX_1cys Peroxiredoxin 98.7 3.3E-08 7.2E-13 85.1 6.9 63 24-88 5-70 (203)
238 cd03007 PDI_a_ERp29_N PDIa fam 98.7 6.4E-09 1.4E-13 80.1 2.1 62 41-127 17-88 (116)
239 PTZ00253 tryparedoxin peroxida 98.7 4.1E-08 9E-13 84.3 6.8 58 30-89 23-82 (199)
240 cd02987 Phd_like_Phd Phosducin 98.7 3.6E-08 7.7E-13 82.6 5.8 57 42-123 83-139 (175)
241 KOG0912 Thiol-disulfide isomer 98.7 9E-08 1.9E-12 83.7 8.2 75 170-267 13-87 (375)
242 PRK13189 peroxiredoxin; Provis 98.6 7.3E-08 1.6E-12 84.0 7.1 67 21-89 12-81 (222)
243 TIGR00411 redox_disulf_1 small 98.6 4.5E-08 9.7E-13 71.2 4.9 56 45-123 2-57 (82)
244 PF07649 C1_3: C1-like domain; 98.6 8.2E-09 1.8E-13 59.5 0.7 29 323-351 1-30 (30)
245 TIGR01295 PedC_BrcD bacterioci 98.6 8.3E-08 1.8E-12 75.4 5.9 43 41-88 22-64 (122)
246 KOG1651 Glutathione peroxidase 98.6 5.4E-07 1.2E-11 72.2 10.3 112 153-267 16-151 (171)
247 PHA02125 thioredoxin-like prot 98.6 2.2E-08 4.8E-13 71.6 2.2 50 46-124 2-51 (75)
248 KOG0855 Alkyl hydroperoxide re 98.6 1.8E-07 3.9E-12 74.6 7.4 118 141-263 59-186 (211)
249 PF13098 Thioredoxin_2: Thiore 98.6 3.8E-08 8.3E-13 76.2 3.1 83 40-123 3-86 (112)
250 cd03013 PRX5_like Peroxiredoxi 98.5 1.6E-07 3.5E-12 77.2 6.5 92 24-118 5-109 (155)
251 PF13728 TraF: F plasmid trans 98.5 4.8E-07 1E-11 78.3 9.6 85 165-267 115-199 (215)
252 cd02947 TRX_family TRX family; 98.5 2.3E-07 5E-12 68.4 5.8 57 42-122 10-66 (93)
253 cd02955 SSP411 TRX domain, SSP 98.5 2E-07 4.2E-12 73.3 5.0 50 35-87 8-60 (124)
254 cd02982 PDI_b'_family Protein 98.5 1.6E-07 3.5E-12 71.5 4.3 58 42-122 12-71 (103)
255 PF02630 SCO1-SenC: SCO1/SenC; 98.5 7.6E-07 1.7E-11 74.7 8.8 66 23-88 31-99 (174)
256 smart00594 UAS UAS domain. 98.5 1.4E-06 3E-11 68.7 9.7 70 168-262 25-97 (122)
257 cd02988 Phd_like_VIAF Phosduci 98.4 2.7E-07 5.8E-12 78.4 5.1 41 42-86 102-142 (192)
258 TIGR02739 TraF type-F conjugat 98.4 1.5E-06 3.3E-11 76.5 9.9 106 165-301 145-250 (256)
259 KOG0854 Alkyl hydroperoxide re 98.4 3.1E-06 6.7E-11 68.2 10.5 118 147-267 8-146 (224)
260 TIGR00412 redox_disulf_2 small 98.4 3.1E-07 6.7E-12 65.8 4.4 36 46-86 2-37 (76)
261 PF14595 Thioredoxin_9: Thiore 98.4 5.1E-07 1.1E-11 71.5 5.8 75 165-267 36-113 (129)
262 cd02973 TRX_GRX_like Thioredox 98.4 3.9E-07 8.5E-12 63.5 4.4 54 46-123 3-56 (67)
263 COG2077 Tpx Peroxiredoxin [Pos 98.4 4.6E-06 9.9E-11 65.9 10.5 116 147-268 20-147 (158)
264 PRK13703 conjugal pilus assemb 98.4 2.1E-06 4.5E-11 75.2 9.4 106 165-301 138-243 (248)
265 PF13899 Thioredoxin_7: Thiore 98.4 6.4E-07 1.4E-11 65.2 4.9 65 168-260 15-82 (82)
266 PRK00293 dipZ thiol:disulfide 98.3 6.1E-07 1.3E-11 89.0 5.2 69 35-123 467-538 (571)
267 TIGR03143 AhpF_homolog putativ 98.3 1.8E-05 3.8E-10 78.8 15.3 177 38-267 362-542 (555)
268 PF03107 C1_2: C1 domain; Int 98.2 5.7E-07 1.2E-11 51.6 1.9 29 323-351 1-30 (30)
269 PF00255 GSHPx: Glutathione pe 98.2 9.8E-06 2.1E-10 61.7 8.6 60 153-216 3-63 (108)
270 COG1999 Uncharacterized protei 98.2 3.2E-06 6.9E-11 72.8 6.1 65 26-90 49-117 (207)
271 KOG1731 FAD-dependent sulfhydr 98.2 2E-06 4.4E-11 81.7 4.8 69 171-261 58-126 (606)
272 cd01659 TRX_superfamily Thiore 98.1 1.3E-05 2.9E-10 54.2 7.5 63 174-261 1-63 (69)
273 COG0526 TrxA Thiol-disulfide i 98.1 8.6E-06 1.9E-10 62.6 7.3 68 165-258 27-96 (127)
274 cd03026 AhpF_NTD_C TRX-GRX-lik 98.1 3E-06 6.5E-11 62.6 4.2 63 37-123 7-69 (89)
275 PF13899 Thioredoxin_7: Thiore 98.1 5E-06 1.1E-10 60.5 4.7 49 36-87 11-62 (82)
276 KOG0855 Alkyl hydroperoxide re 98.0 1.1E-05 2.3E-10 64.6 6.0 99 23-124 68-172 (211)
277 PF00837 T4_deiodinase: Iodoth 98.0 1.9E-05 4.1E-10 67.9 7.9 117 145-269 73-218 (237)
278 PF03190 Thioredox_DsbH: Prote 98.0 3.1E-05 6.6E-10 63.2 7.6 87 162-268 29-119 (163)
279 cd02960 AGR Anterior Gradient 97.9 1.2E-05 2.5E-10 63.3 4.6 47 35-86 16-65 (130)
280 COG2143 Thioredoxin-related pr 97.9 0.00012 2.7E-09 58.1 10.3 88 167-267 39-131 (182)
281 COG0526 TrxA Thiol-disulfide i 97.9 3E-05 6.5E-10 59.5 6.9 52 36-90 26-78 (127)
282 cd02958 UAS UAS family; UAS is 97.9 1E-05 2.3E-10 62.8 3.5 68 35-123 10-80 (114)
283 PRK15317 alkyl hydroperoxide r 97.9 0.00032 6.9E-09 69.3 14.8 166 38-267 15-182 (517)
284 PRK11509 hydrogenase-1 operon 97.9 0.00012 2.6E-09 57.7 9.0 88 172-300 36-125 (132)
285 COG4232 Thiol:disulfide interc 97.9 2.4E-05 5.2E-10 75.4 5.8 75 169-265 473-548 (569)
286 COG0450 AhpC Peroxiredoxin [Po 97.8 4.3E-05 9.2E-10 63.5 6.2 69 18-88 3-78 (194)
287 TIGR02200 GlrX_actino Glutared 97.8 9.8E-05 2.1E-09 52.6 7.5 63 174-267 2-65 (77)
288 KOG0914 Thioredoxin-like prote 97.8 3.8E-05 8.3E-10 64.3 5.3 93 169-290 143-242 (265)
289 smart00594 UAS UAS domain. 97.8 2.1E-05 4.5E-10 61.9 3.6 69 35-124 20-91 (122)
290 cd02991 UAS_ETEA UAS family, E 97.8 0.00022 4.8E-09 55.4 9.0 74 168-267 15-95 (116)
291 cd02340 ZZ_NBR1_like Zinc fing 97.7 1.6E-05 3.4E-10 49.7 1.6 30 324-353 2-32 (43)
292 TIGR03140 AhpF alkyl hydropero 97.7 0.0012 2.5E-08 65.3 15.4 164 38-266 15-182 (515)
293 PF06110 DUF953: Eukaryotic pr 97.7 0.00013 2.8E-09 56.5 6.9 77 169-265 18-103 (119)
294 TIGR02196 GlrX_YruB Glutaredox 97.7 0.00019 4E-09 50.4 7.0 55 174-257 2-56 (74)
295 TIGR02180 GRX_euk Glutaredoxin 97.7 0.00011 2.5E-09 53.3 5.9 60 174-257 1-60 (84)
296 PF00255 GSHPx: Glutathione pe 97.7 0.00024 5.2E-09 54.1 7.5 56 28-86 6-62 (108)
297 KOG2792 Putative cytochrome C 97.6 7.2E-05 1.6E-09 64.4 5.0 89 14-103 111-205 (280)
298 PRK11657 dsbG disulfide isomer 97.6 0.0012 2.6E-08 58.7 12.0 94 168-267 115-235 (251)
299 PRK10877 protein disulfide iso 97.6 0.0015 3.3E-08 57.3 12.4 88 169-265 106-214 (232)
300 PF13192 Thioredoxin_3: Thiore 97.5 0.00083 1.8E-08 47.9 8.0 58 178-268 6-63 (76)
301 TIGR02196 GlrX_YruB Glutaredox 97.3 0.00045 9.7E-09 48.4 5.2 36 46-90 2-37 (74)
302 COG0386 BtuE Glutathione perox 97.3 0.0011 2.3E-08 52.9 7.4 71 28-101 10-88 (162)
303 cd02339 ZZ_Mind_bomb Zinc fing 97.3 0.00011 2.4E-09 46.2 1.5 30 324-353 2-33 (45)
304 cd02342 ZZ_UBA_plant Zinc fing 97.3 0.00012 2.6E-09 44.8 1.3 30 324-353 2-33 (43)
305 PF00462 Glutaredoxin: Glutare 97.3 0.0016 3.5E-08 44.0 7.0 55 174-257 1-55 (60)
306 cd03020 DsbA_DsbC_DsbG DsbA fa 97.3 0.0031 6.7E-08 53.9 10.4 94 164-265 71-184 (197)
307 KOG3425 Uncharacterized conser 97.2 0.00086 1.9E-08 50.9 5.6 72 169-260 24-104 (128)
308 TIGR02180 GRX_euk Glutaredoxin 97.2 0.00041 9E-09 50.3 3.9 40 46-90 1-40 (84)
309 PRK11200 grxA glutaredoxin 1; 97.2 0.0025 5.4E-08 46.5 8.0 65 174-265 3-69 (85)
310 PF13728 TraF: F plasmid trans 97.1 0.00056 1.2E-08 59.2 4.6 48 35-87 113-160 (215)
311 COG4232 Thiol:disulfide interc 97.1 0.00048 1E-08 66.6 4.3 66 39-122 471-537 (569)
312 cd02344 ZZ_HERC2 Zinc finger, 97.1 0.00026 5.6E-09 44.5 1.6 29 324-352 2-32 (45)
313 cd01659 TRX_superfamily Thiore 97.1 0.0014 2.9E-08 43.9 5.1 41 46-90 1-41 (69)
314 cd02343 ZZ_EF Zinc finger, ZZ 97.0 0.00025 5.5E-09 44.9 1.1 28 324-351 2-30 (48)
315 KOG0852 Alkyl hydroperoxide re 97.0 0.0014 3E-08 53.3 5.0 87 29-117 19-115 (196)
316 KOG0911 Glutaredoxin-related p 97.0 0.0019 4.2E-08 54.8 6.0 31 41-71 16-46 (227)
317 cd02341 ZZ_ZZZ3 Zinc finger, Z 96.9 0.00042 9E-09 44.3 1.5 31 323-353 1-35 (48)
318 cd02334 ZZ_dystrophin Zinc fin 96.9 0.00048 1E-08 44.2 1.7 29 324-352 2-32 (49)
319 KOG1651 Glutathione peroxidase 96.9 0.0015 3.2E-08 52.8 4.7 57 28-86 19-76 (171)
320 cd02249 ZZ Zinc finger, ZZ typ 96.9 0.00046 9.9E-09 43.9 1.4 32 323-354 1-33 (46)
321 PF03190 Thioredox_DsbH: Prote 96.8 0.00049 1.1E-08 56.2 1.1 50 35-89 30-82 (163)
322 PF02114 Phosducin: Phosducin; 96.8 0.0042 9.1E-08 55.4 7.0 68 170-267 146-213 (265)
323 TIGR02200 GlrX_actino Glutared 96.7 0.0035 7.7E-08 44.4 5.3 36 46-90 2-37 (77)
324 KOG0914 Thioredoxin-like prote 96.7 0.0012 2.5E-08 55.7 2.8 60 41-122 143-202 (265)
325 smart00291 ZnF_ZZ Zinc-binding 96.7 0.00091 2E-08 42.1 1.6 32 322-353 4-36 (44)
326 KOG0911 Glutaredoxin-related p 96.7 0.0033 7.1E-08 53.4 5.3 69 169-266 16-84 (227)
327 cd03419 GRX_GRXh_1_2_like Glut 96.6 0.0041 9E-08 44.7 5.0 63 174-265 2-64 (82)
328 PF00569 ZZ: Zinc finger, ZZ t 96.6 0.00056 1.2E-08 43.5 0.1 31 322-352 4-36 (46)
329 cd02972 DsbA_family DsbA famil 96.5 0.0062 1.3E-07 44.9 5.6 82 174-259 1-91 (98)
330 cd02345 ZZ_dah Zinc finger, ZZ 96.4 0.0022 4.9E-08 41.3 1.9 29 324-352 2-32 (49)
331 PF14595 Thioredoxin_9: Thiore 96.3 0.0026 5.6E-08 50.4 2.5 51 37-91 36-86 (129)
332 cd02976 NrdH NrdH-redoxin (Nrd 96.3 0.018 3.8E-07 40.0 6.6 55 174-257 2-56 (73)
333 cd02338 ZZ_PCMF_like Zinc fing 96.3 0.0025 5.3E-08 41.1 1.9 30 324-353 2-33 (49)
334 cd02066 GRX_family Glutaredoxi 96.3 0.027 5.8E-07 38.8 7.5 60 174-265 2-61 (72)
335 cd02335 ZZ_ADA2 Zinc finger, Z 96.3 0.0024 5.3E-08 41.2 1.7 31 323-353 1-33 (49)
336 cd03019 DsbA_DsbA DsbA family, 96.3 0.045 9.7E-07 45.7 9.9 41 169-213 14-54 (178)
337 PF04592 SelP_N: Selenoprotein 96.3 0.03 6.5E-07 48.2 8.6 114 150-267 9-125 (238)
338 KOG0913 Thiol-disulfide isomer 96.2 0.00061 1.3E-08 58.1 -2.0 58 44-123 41-98 (248)
339 PF11009 DUF2847: Protein of u 96.1 0.03 6.4E-07 42.2 7.0 74 170-267 19-93 (105)
340 cd03023 DsbA_Com1_like DsbA fa 96.1 0.012 2.7E-07 47.6 5.3 41 41-85 4-44 (154)
341 TIGR02190 GlrX-dom Glutaredoxi 96.0 0.023 5E-07 40.7 6.1 63 170-265 6-68 (79)
342 TIGR02183 GRXA Glutaredoxin, G 96.0 0.015 3.3E-07 42.4 5.1 60 174-257 2-63 (86)
343 PF09695 YtfJ_HI0045: Bacteria 96.0 0.11 2.3E-06 42.1 10.2 120 161-296 28-158 (160)
344 TIGR02739 TraF type-F conjugat 96.0 0.0081 1.8E-07 53.1 4.2 49 35-88 143-191 (256)
345 PF13848 Thioredoxin_6: Thiore 96.0 0.022 4.8E-07 47.7 6.8 97 140-264 64-164 (184)
346 PRK13703 conjugal pilus assemb 96.0 0.0075 1.6E-07 53.0 3.9 47 36-87 137-183 (248)
347 PF06110 DUF953: Eukaryotic pr 96.0 0.021 4.7E-07 44.2 6.0 44 40-86 17-67 (119)
348 KOG3425 Uncharacterized conser 95.9 0.022 4.8E-07 43.4 5.5 44 41-87 24-75 (128)
349 cd03418 GRX_GRXb_1_3_like Glut 95.7 0.054 1.2E-06 38.0 6.8 60 174-265 2-62 (75)
350 TIGR02181 GRX_bact Glutaredoxi 95.7 0.036 7.9E-07 39.5 5.8 54 175-257 2-55 (79)
351 COG1331 Highly conserved prote 95.6 0.064 1.4E-06 53.2 8.8 109 166-296 39-151 (667)
352 PRK11200 grxA glutaredoxin 1; 95.5 0.032 6.9E-07 40.5 5.1 39 46-88 3-41 (85)
353 TIGR02189 GlrX-like_plant Glut 95.5 0.049 1.1E-06 40.9 6.1 63 174-265 10-72 (99)
354 KOG4582 Uncharacterized conser 95.4 0.0063 1.4E-07 54.7 1.2 32 322-353 152-185 (278)
355 cd03027 GRX_DEP Glutaredoxin ( 95.4 0.083 1.8E-06 37.0 6.8 55 174-257 3-57 (73)
356 cd02337 ZZ_CBP Zinc finger, ZZ 95.4 0.0055 1.2E-07 37.7 0.5 30 323-353 1-31 (41)
357 PHA03050 glutaredoxin; Provisi 95.4 0.031 6.7E-07 42.7 4.7 66 174-265 15-80 (108)
358 PF05988 DUF899: Bacterial pro 95.3 0.099 2.1E-06 44.4 8.0 110 151-265 46-168 (211)
359 cd02991 UAS_ETEA UAS family, E 95.2 0.012 2.7E-07 45.6 2.1 67 35-123 10-80 (116)
360 cd03029 GRX_hybridPRX5 Glutare 95.2 0.086 1.9E-06 36.8 6.2 59 174-265 3-61 (72)
361 cd03419 GRX_GRXh_1_2_like Glut 95.1 0.033 7.2E-07 39.9 4.2 36 46-88 2-37 (82)
362 KOG3414 Component of the U4/U6 95.1 0.12 2.6E-06 39.8 7.0 63 169-258 22-84 (142)
363 cd02976 NrdH NrdH-redoxin (Nrd 95.1 0.066 1.4E-06 37.0 5.5 36 46-90 2-37 (73)
364 PF00462 Glutaredoxin: Glutare 95.1 0.066 1.4E-06 35.9 5.3 35 46-89 1-35 (60)
365 PRK10638 glutaredoxin 3; Provi 95.0 0.14 3.1E-06 36.9 7.2 60 174-265 4-63 (83)
366 cd03028 GRX_PICOT_like Glutare 95.0 0.11 2.4E-06 38.2 6.5 65 169-265 6-74 (90)
367 PF13462 Thioredoxin_4: Thiore 94.9 0.11 2.4E-06 42.4 7.2 53 35-88 5-57 (162)
368 cd03023 DsbA_Com1_like DsbA fa 94.8 0.062 1.3E-06 43.4 5.4 41 169-214 4-44 (154)
369 COG4545 Glutaredoxin-related p 94.8 0.074 1.6E-06 36.9 4.6 70 175-266 5-77 (85)
370 TIGR02194 GlrX_NrdH Glutaredox 94.7 0.13 2.7E-06 36.0 6.0 53 175-257 2-54 (72)
371 cd03020 DsbA_DsbC_DsbG DsbA fa 94.7 0.064 1.4E-06 45.8 5.4 32 35-66 70-101 (197)
372 PRK10329 glutaredoxin-like pro 94.7 0.17 3.7E-06 36.4 6.7 54 174-257 3-56 (81)
373 TIGR00365 monothiol glutaredox 94.6 0.16 3.4E-06 38.0 6.7 64 170-265 11-78 (97)
374 PF13462 Thioredoxin_4: Thiore 94.6 0.12 2.7E-06 42.2 6.7 51 163-215 5-55 (162)
375 COG2143 Thioredoxin-related pr 94.5 0.11 2.3E-06 41.8 5.6 48 38-88 38-88 (182)
376 KOG0913 Thiol-disulfide isomer 94.3 0.022 4.8E-07 48.8 1.5 69 171-266 40-108 (248)
377 cd03019 DsbA_DsbA DsbA family, 94.1 0.072 1.6E-06 44.4 4.4 32 41-72 14-45 (178)
378 TIGR02190 GlrX-dom Glutaredoxi 93.8 0.079 1.7E-06 37.9 3.5 38 43-89 7-44 (79)
379 PF05176 ATP-synt_10: ATP10 pr 93.7 0.82 1.8E-05 40.6 10.4 132 151-295 101-249 (252)
380 PF13192 Thioredoxin_3: Thiore 93.7 0.15 3.2E-06 36.2 4.7 51 47-123 3-53 (76)
381 cd02066 GRX_family Glutaredoxi 93.5 0.19 4.1E-06 34.4 4.9 36 46-90 2-37 (72)
382 KOG1672 ATP binding protein [P 93.0 0.15 3.1E-06 42.6 4.2 70 169-267 83-152 (211)
383 COG0695 GrxC Glutaredoxin and 92.8 0.53 1.2E-05 33.7 6.5 20 174-193 3-22 (80)
384 PRK10329 glutaredoxin-like pro 92.5 0.23 5E-06 35.7 4.2 37 46-91 3-39 (81)
385 PF00130 C1_1: Phorbol esters/ 92.5 0.097 2.1E-06 34.2 2.1 35 320-354 9-46 (53)
386 cd03027 GRX_DEP Glutaredoxin ( 92.1 0.5 1.1E-05 32.9 5.5 36 46-90 3-38 (73)
387 TIGR02183 GRXA Glutaredoxin, G 91.6 0.35 7.6E-06 35.1 4.4 39 46-88 2-40 (86)
388 cd00029 C1 Protein kinase C co 91.6 0.17 3.7E-06 32.4 2.4 35 321-355 10-47 (50)
389 TIGR02189 GlrX-like_plant Glut 91.6 0.29 6.2E-06 36.7 4.0 34 46-88 10-43 (99)
390 COG0678 AHP1 Peroxiredoxin [Po 91.6 1.1 2.4E-05 35.9 7.3 116 147-268 5-145 (165)
391 cd02972 DsbA_family DsbA famil 91.5 0.29 6.4E-06 35.6 4.1 38 46-86 1-38 (98)
392 KOG1752 Glutaredoxin and relat 91.5 0.87 1.9E-05 34.4 6.5 65 171-265 14-78 (104)
393 TIGR03143 AhpF_homolog putativ 91.5 0.88 1.9E-05 45.5 8.5 69 167-263 363-431 (555)
394 KOG0854 Alkyl hydroperoxide re 91.4 0.71 1.5E-05 37.9 6.2 67 20-88 8-77 (224)
395 PRK10824 glutaredoxin-4; Provi 91.1 0.26 5.6E-06 38.1 3.3 64 170-265 14-81 (115)
396 COG4312 Uncharacterized protei 90.8 0.43 9.4E-06 40.6 4.6 93 152-249 53-153 (247)
397 cd03418 GRX_GRXb_1_3_like Glut 90.7 0.89 1.9E-05 31.7 5.7 36 46-90 2-37 (75)
398 TIGR02181 GRX_bact Glutaredoxi 90.6 0.6 1.3E-05 33.1 4.8 36 47-91 2-37 (79)
399 PF02966 DIM1: Mitosis protein 90.6 1.4 3.1E-05 34.5 7.0 62 169-258 19-80 (133)
400 PRK10954 periplasmic protein d 90.2 0.32 7E-06 41.8 3.6 33 40-72 35-70 (207)
401 PF05768 DUF836: Glutaredoxin- 90.1 0.56 1.2E-05 33.6 4.2 56 174-259 2-57 (81)
402 TIGR02194 GlrX_NrdH Glutaredox 90.0 0.79 1.7E-05 31.9 4.9 38 47-93 2-39 (72)
403 cd02336 ZZ_RSC8 Zinc finger, Z 90.0 0.23 4.9E-06 31.2 1.8 30 323-352 1-31 (45)
404 cd03029 GRX_hybridPRX5 Glutare 89.9 0.48 1E-05 32.9 3.7 35 46-89 3-37 (72)
405 KOG2603 Oligosaccharyltransfer 89.6 4.4 9.5E-05 36.6 10.1 104 141-265 28-141 (331)
406 cd02983 P5_C P5 family, C-term 89.3 3.7 8E-05 32.4 8.7 51 187-263 41-93 (130)
407 PF02966 DIM1: Mitosis protein 88.9 5.9 0.00013 31.1 9.2 58 40-101 18-75 (133)
408 smart00109 C1 Protein kinase C 88.7 0.18 4E-06 31.9 0.7 36 320-355 9-46 (49)
409 PRK10877 protein disulfide iso 88.6 1.3 2.9E-05 38.8 6.3 46 35-86 100-145 (232)
410 PHA03050 glutaredoxin; Provisi 88.4 0.44 9.6E-06 36.3 2.8 21 46-66 15-35 (108)
411 PF00837 T4_deiodinase: Iodoth 87.9 0.57 1.2E-05 40.7 3.4 64 20-86 75-143 (237)
412 PF04592 SelP_N: Selenoprotein 87.7 1 2.2E-05 39.0 4.8 58 29-86 13-71 (238)
413 PRK11509 hydrogenase-1 operon 87.7 0.6 1.3E-05 36.9 3.1 60 42-123 34-95 (132)
414 COG2077 Tpx Peroxiredoxin [Pos 87.2 2.4 5.2E-05 34.0 6.2 62 22-87 22-86 (158)
415 PRK10954 periplasmic protein d 86.3 0.83 1.8E-05 39.3 3.6 41 169-213 36-79 (207)
416 PRK10638 glutaredoxin 3; Provi 86.2 2 4.4E-05 30.7 5.1 35 46-89 4-38 (83)
417 KOG3414 Component of the U4/U6 85.5 1.9 4.2E-05 33.4 4.7 46 39-87 20-65 (142)
418 KOG4236 Serine/threonine prote 85.0 0.14 3E-06 49.5 -2.0 48 310-357 143-194 (888)
419 PRK15317 alkyl hydroperoxide r 84.7 1.3 2.9E-05 43.8 4.7 60 39-122 113-172 (517)
420 PF07449 HyaE: Hydrogenase-1 e 84.6 1.1 2.4E-05 34.0 3.1 27 240-267 71-97 (107)
421 cd03073 PDI_b'_ERp72_ERp57 PDI 84.2 4.5 9.7E-05 31.0 6.4 51 186-262 34-88 (111)
422 PRK12759 bifunctional gluaredo 83.2 2.1 4.5E-05 41.0 5.2 35 174-218 4-38 (410)
423 cd03060 GST_N_Omega_like GST_N 83.2 7.2 0.00016 26.7 6.7 59 176-266 3-61 (71)
424 cd03028 GRX_PICOT_like Glutare 82.8 3.7 8E-05 30.0 5.3 40 41-89 6-49 (90)
425 PF02114 Phosducin: Phosducin; 82.5 3 6.6E-05 37.3 5.6 42 41-86 145-186 (265)
426 COG4312 Uncharacterized protei 81.9 2.4 5.1E-05 36.3 4.3 57 28-86 57-121 (247)
427 COG0695 GrxC Glutaredoxin and 81.4 4.1 9E-05 29.0 5.0 34 46-88 3-36 (80)
428 TIGR00365 monothiol glutaredox 81.3 3.7 8.1E-05 30.5 4.9 39 42-89 11-53 (97)
429 PHA03075 glutaredoxin-like pro 79.6 2.2 4.7E-05 32.5 3.0 85 171-268 2-87 (123)
430 PRK11657 dsbG disulfide isomer 78.4 3.2 6.9E-05 36.9 4.3 30 40-69 115-144 (251)
431 KOG1752 Glutaredoxin and relat 77.7 6.9 0.00015 29.6 5.3 36 46-88 16-51 (104)
432 PF05768 DUF836: Glutaredoxin- 77.6 2.7 5.8E-05 30.1 3.0 41 46-91 2-42 (81)
433 KOG4301 Beta-dystrobrevin [Cyt 76.5 0.74 1.6E-05 41.7 -0.2 69 285-353 200-273 (434)
434 PF06953 ArsD: Arsenical resis 76.2 22 0.00049 27.7 7.9 62 188-268 25-86 (123)
435 PF13778 DUF4174: Domain of un 76.1 20 0.00044 27.6 7.8 89 165-267 3-94 (118)
436 KOG3170 Conserved phosducin-li 75.6 11 0.00023 32.0 6.2 94 170-302 111-204 (240)
437 PF01216 Calsequestrin: Calseq 75.5 20 0.00042 33.2 8.4 72 171-269 52-129 (383)
438 TIGR03140 AhpF alkyl hydropero 74.8 4.6 0.0001 40.0 4.8 61 38-122 113-173 (515)
439 KOG3507 DNA-directed RNA polym 74.5 1.4 3.1E-05 28.9 0.8 26 321-346 19-47 (62)
440 PF13832 zf-HC5HC2H_2: PHD-zin 74.4 1.9 4.2E-05 32.8 1.6 34 321-355 54-89 (110)
441 cd02977 ArsC_family Arsenate R 73.1 5.7 0.00012 29.9 3.9 32 47-87 2-33 (105)
442 KOG2640 Thioredoxin [Function 72.9 0.7 1.5E-05 41.6 -1.3 124 43-198 77-202 (319)
443 cd03060 GST_N_Omega_like GST_N 72.8 6.9 0.00015 26.8 4.0 34 47-87 2-35 (71)
444 cd03072 PDI_b'_ERp44 PDIb' fam 72.1 18 0.00039 27.6 6.5 50 186-262 30-84 (111)
445 KOG2640 Thioredoxin [Function 70.6 0.9 2E-05 40.9 -1.1 75 171-272 77-151 (319)
446 PRK12759 bifunctional gluaredo 70.5 6.7 0.00015 37.6 4.6 35 46-89 4-38 (410)
447 cd03031 GRX_GRX_like Glutaredo 70.3 21 0.00045 28.9 6.7 14 181-194 15-28 (147)
448 KOG2507 Ubiquitin regulatory p 69.9 36 0.00079 32.3 8.9 28 240-267 66-93 (506)
449 cd02978 KaiB_like KaiB-like fa 69.6 23 0.0005 24.7 5.9 63 172-260 2-64 (72)
450 COG1331 Highly conserved prote 68.7 3.9 8.5E-05 41.0 2.7 55 30-89 29-88 (667)
451 PF05988 DUF899: Bacterial pro 68.5 9.6 0.00021 32.6 4.6 58 28-87 51-116 (211)
452 TIGR01617 arsC_related transcr 68.5 11 0.00025 28.9 4.8 33 47-88 2-34 (117)
453 cd03036 ArsC_like Arsenate Red 67.0 8.6 0.00019 29.3 3.8 33 47-88 2-34 (111)
454 cd03036 ArsC_like Arsenate Red 66.9 3.4 7.3E-05 31.6 1.5 20 175-194 2-21 (111)
455 PRK01655 spxA transcriptional 66.9 11 0.00024 29.7 4.5 34 46-88 2-35 (131)
456 cd03067 PDI_b_PDIR_N PDIb fami 66.7 10 0.00022 28.3 3.8 54 43-118 20-73 (112)
457 PF13743 Thioredoxin_5: Thiore 66.4 10 0.00023 31.6 4.5 36 48-86 2-37 (176)
458 KOG0541 Alkyl hydroperoxide re 66.2 17 0.00036 29.6 5.2 101 162-268 34-151 (171)
459 cd03035 ArsC_Yffb Arsenate Red 64.6 9.9 0.00022 28.7 3.7 31 47-86 2-32 (105)
460 PF10571 UPF0547: Uncharacteri 63.9 4.1 8.9E-05 22.3 1.0 23 324-346 2-24 (26)
461 COG1651 DsbG Protein-disulfide 63.8 19 0.00042 31.5 5.9 46 28-73 69-115 (244)
462 cd03041 GST_N_2GST_N GST_N fam 63.8 41 0.0009 23.3 6.6 20 175-194 3-22 (77)
463 cd02977 ArsC_family Arsenate R 62.9 12 0.00025 28.1 3.8 20 175-194 2-21 (105)
464 PRK09301 circadian clock prote 61.8 38 0.00083 25.4 6.1 67 169-261 4-70 (103)
465 COG1651 DsbG Protein-disulfide 61.8 21 0.00045 31.3 5.8 45 157-201 71-115 (244)
466 KOG4286 Dystrophin-like protei 61.3 3 6.5E-05 42.0 0.3 28 324-351 605-634 (966)
467 KOG3171 Conserved phosducin-li 60.8 15 0.00034 31.3 4.3 67 170-266 159-225 (273)
468 PRK12496 hypothetical protein; 60.5 6.2 0.00014 32.5 2.0 10 334-343 125-134 (164)
469 PF00628 PHD: PHD-finger; Int 60.1 8.8 0.00019 24.4 2.3 30 325-354 2-32 (51)
470 KOG4236 Serine/threonine prote 59.4 1.3 2.9E-05 43.0 -2.4 42 313-354 269-313 (888)
471 PRK12559 transcriptional regul 59.3 16 0.00035 28.8 4.1 32 46-86 2-33 (131)
472 TIGR02654 circ_KaiB circadian 59.2 48 0.001 24.1 6.1 65 171-261 3-67 (87)
473 PHA03075 glutaredoxin-like pro 58.7 17 0.00037 27.8 3.8 37 43-86 2-38 (123)
474 cd03032 ArsC_Spx Arsenate Redu 58.7 22 0.00048 27.2 4.7 32 47-87 3-34 (115)
475 PF13909 zf-H2C2_5: C2H2-type 58.4 5.7 0.00012 20.8 1.0 9 337-345 1-9 (24)
476 PRK11788 tetratricopeptide rep 58.1 20 0.00044 33.6 5.4 32 321-352 353-386 (389)
477 PRK10824 glutaredoxin-4; Provi 57.5 9.2 0.0002 29.5 2.4 25 42-66 14-42 (115)
478 PF06764 DUF1223: Protein of u 57.3 54 0.0012 28.1 7.2 70 174-257 2-76 (202)
479 cd03059 GST_N_SspA GST_N famil 57.3 13 0.00028 25.3 3.0 33 47-86 2-34 (73)
480 KOG4498 Uncharacterized conser 57.2 23 0.0005 29.7 4.7 56 156-214 35-92 (197)
481 PF13911 AhpC-TSA_2: AhpC/TSA 57.1 21 0.00047 27.1 4.5 53 193-250 3-55 (115)
482 KOG1672 ATP binding protein [P 56.7 21 0.00045 30.2 4.4 60 41-124 83-142 (211)
483 cd03035 ArsC_Yffb Arsenate Red 56.3 18 0.00039 27.3 3.8 20 175-194 2-21 (105)
484 COG2761 FrnE Predicted dithiol 56.2 34 0.00074 29.7 5.8 30 44-73 5-35 (225)
485 PF13848 Thioredoxin_6: Thiore 56.0 7.5 0.00016 32.1 1.8 70 16-89 67-139 (184)
486 TIGR01617 arsC_related transcr 55.8 21 0.00046 27.4 4.2 32 176-217 3-34 (117)
487 cd03040 GST_N_mPGES2 GST_N fam 55.8 64 0.0014 22.1 6.6 20 175-194 3-22 (77)
488 KOG4498 Uncharacterized conser 55.5 21 0.00045 30.0 4.2 56 28-85 34-92 (197)
489 smart00249 PHD PHD zinc finger 54.4 12 0.00027 22.7 2.2 30 325-354 2-32 (47)
490 PF04134 DUF393: Protein of un 53.8 25 0.00055 26.6 4.4 19 177-195 2-20 (114)
491 PRK01655 spxA transcriptional 53.5 24 0.00053 27.8 4.3 43 174-226 2-47 (131)
492 PF13743 Thioredoxin_5: Thiore 53.5 20 0.00044 29.8 4.0 35 176-214 2-36 (176)
493 PF06053 DUF929: Domain of unk 53.1 32 0.0007 30.4 5.3 33 169-201 57-89 (249)
494 cd03037 GST_N_GRX2 GST_N famil 52.6 58 0.0013 21.9 5.7 18 176-193 3-20 (71)
495 cd02981 PDI_b_family Protein D 52.5 85 0.0018 22.6 7.6 28 170-200 17-44 (97)
496 PF11672 DUF3268: Protein of u 51.8 12 0.00025 28.2 2.0 17 333-349 28-46 (102)
497 PF07191 zinc-ribbons_6: zinc- 50.1 7.1 0.00015 27.0 0.6 28 314-343 10-37 (70)
498 PF10851 DUF2652: Protein of u 49.4 18 0.00038 27.6 2.6 46 25-72 5-50 (116)
499 TIGR02742 TrbC_Ftype type-F co 49.2 1.1E+02 0.0023 24.2 7.2 23 240-262 60-82 (130)
500 PLN03098 LPA1 LOW PSII ACCUMUL 48.6 1.6E+02 0.0034 28.6 9.4 106 159-268 285-428 (453)
No 1
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.92 E-value=1.8e-24 Score=173.60 Aligned_cols=129 Identities=49% Similarity=1.009 Sum_probs=118.0
Q ss_pred ceecCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCcccc
Q 018332 154 YVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAI 233 (358)
Q Consensus 154 f~l~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 233 (358)
|..+.+|+.+++++++||+|+|+||++||++|+.++|.|.++++++++ .+.+++|++|++|.+.+.+.+++..++|..+
T Consensus 2 ~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 2 FLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE-SGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred cccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 555889999999999999999999999999999999999999999975 2347999999999999999999999999888
Q ss_pred ccCc-hhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCC
Q 018332 234 PYED-RARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPF 283 (358)
Q Consensus 234 ~~~~-~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~ 283 (358)
|+.. +....+++.|++.++|+++|||++|+++.++++.++..+|+.+|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 8765 5567899999999999999999999999999999999999999996
No 2
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.91 E-value=2.2e-24 Score=173.43 Aligned_cols=120 Identities=28% Similarity=0.561 Sum_probs=106.2
Q ss_pred ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcc----cCCceEEEEEeCCCCHHHHHHhhhcCC--ccccc
Q 018332 161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT----ANHCFEVVLVSTDRDHKEFDLNHSIMP--WLAIP 234 (358)
Q Consensus 161 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~----~~~~~~vv~v~~d~~~~~~~~~~~~~~--~~~~~ 234 (358)
+.+++++++||+|+|+|||+||++|+.++|.|.++++++++. ...+++||+|+.|.+.+.+.+++..++ |+.+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 456788999999999999999999999999999999988752 124799999999999888999999887 88888
Q ss_pred cCchhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCC
Q 018332 235 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKA 280 (358)
Q Consensus 235 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~ 280 (358)
+..+....+.++|++.++|+++|||++|+|++++|+..+..+|..+
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~ 141 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPAC 141 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHH
Confidence 8777667899999999999999999999999999999888888654
No 3
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.89 E-value=8.8e-23 Score=163.94 Aligned_cols=122 Identities=48% Similarity=0.958 Sum_probs=108.5
Q ss_pred ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcC-CccccccCc-h
Q 018332 161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM-PWLAIPYED-R 238 (358)
Q Consensus 161 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~-~~~~~~~~~-~ 238 (358)
+++++++++||+++|+||++||++|+.++|.|+++++++++ ...+++|++|++|.+.+.+.+++.++ +|..+++.+ .
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~-~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~ 86 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE-EGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEE 86 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh-cCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHH
Confidence 58999999999999999999999999999999999999985 12379999999999988999999988 688888765 3
Q ss_pred hHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhh-cCCCCCCC
Q 018332 239 ARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL-YGAKAFPF 283 (358)
Q Consensus 239 ~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~-~g~~~~p~ 283 (358)
....+.+.|++.++|+++|||++|+|+++++...+.. +|+.+|||
T Consensus 87 ~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 87 LRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 4567888999999999999999999999998877775 89999986
No 4
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.84 E-value=2.2e-20 Score=148.45 Aligned_cols=121 Identities=45% Similarity=0.849 Sum_probs=111.6
Q ss_pred cCCCceeeec-ccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhc--CCcccc
Q 018332 157 SRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI--MPWLAI 233 (358)
Q Consensus 157 ~~~g~~~~l~-~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~--~~~~~~ 233 (358)
..+|..+..+ .++||+|.++|.|.|||+|+.+.|.|.++|++.++ ....++||+||.|.+.+++..++.. ++|+.+
T Consensus 19 ~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~-~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~i 97 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKD-NAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAI 97 (157)
T ss_pred ccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHh-cCCceEEEEEecCCCHHHHHHHHHhcCCCeEEe
Confidence 6667766666 78999999999999999999999999999999986 4457999999999999999999984 679999
Q ss_pred ccCchhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCC
Q 018332 234 PYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 278 (358)
Q Consensus 234 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~ 278 (358)
|+.++..+++.++|+|.++|++.+++++|+++..+||..+..+|.
T Consensus 98 Pf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 98 PFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred cCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 999999999999999999999999999999999999999999985
No 5
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.82 E-value=7.3e-20 Score=149.67 Aligned_cols=117 Identities=28% Similarity=0.489 Sum_probs=102.0
Q ss_pred hhhccCCcee-c--CCCceeeecccCCcEEEEEEecc-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018332 147 LAIEGRDYVL-S--RDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 222 (358)
Q Consensus 147 ~~~~~p~f~l-~--~~g~~~~l~~~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 222 (358)
.|.++|+|.+ + .+|+.+++++++||+++|+||++ |||+|..++|.|.+++++|+. .++.+++|+.+.+.. ..
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~---~~v~~v~v~~~~~~~-~~ 77 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD---KGVDVVGVSSDDDPP-VR 77 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT---TTCEEEEEEESSSHH-HH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc---CceEEEEecccCCHH-HH
Confidence 4788999997 4 99999999999999999999999 999999999999999999986 889999999998876 66
Q ss_pred HhhhcCCccccccCchhHHHHHHHcCCC---------ceeeEEEECCCCcEEecC
Q 018332 223 LNHSIMPWLAIPYEDRARQDLCRIFNIK---------GIPALVLIGPDGKTISTN 268 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~~ 268 (358)
+++...+ ..+|+..|....+.+.|++. ++|++++||++|+|++++
T Consensus 78 ~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 78 EFLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp HHHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred HHHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 6666533 56777777788999999998 999999999999999984
No 6
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.82 E-value=9.4e-20 Score=137.67 Aligned_cols=93 Identities=41% Similarity=0.833 Sum_probs=85.0
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcC--CccccccCchhHHHHHHHc
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM--PWLAIPYEDRARQDLCRIF 247 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 247 (358)
||+++|+||++||++|+.++|.|.+++++|++ +.+++||+|++|.+.+++.++++.+ +|..+++..+....+.+.|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~--~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK--KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKY 78 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHC
Confidence 79999999999999999999999999999982 4899999999999999999999977 8999999988889999999
Q ss_pred CCCceeeEEEECCCCcE
Q 018332 248 NIKGIPALVLIGPDGKT 264 (358)
Q Consensus 248 ~v~~~P~~~lid~~G~v 264 (358)
++.++|+++|+|++|+|
T Consensus 79 ~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 79 GINGIPTLVLLDPDGKI 95 (95)
T ss_dssp T-TSSSEEEEEETTSBE
T ss_pred CCCcCCEEEEECCCCCC
Confidence 99999999999999987
No 7
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.82 E-value=1.7e-19 Score=141.03 Aligned_cols=110 Identities=20% Similarity=0.350 Sum_probs=93.9
Q ss_pred CCcee-cCCCceeeecccC-CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCC
Q 018332 152 RDYVL-SRDHRKITVSELA-GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 229 (358)
Q Consensus 152 p~f~l-~~~g~~~~l~~~~-~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 229 (358)
|+|.+ +.+|+.+++++++ ||+++|+||++||++|+.++|.++++++++. .++.++.++ +.+.++..++.+.++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~----~~~~vi~v~-~~~~~~~~~~~~~~~ 75 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA----DWLDVVLAS-DGEKAEHQRFLKKHG 75 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhc----CCcEEEEEe-CCCHHHHHHHHHHhC
Confidence 67887 8899999999997 9999999999999999999999999988875 568888775 667788888888776
Q ss_pred ccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018332 230 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 268 (358)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 268 (358)
...+|...+ ..+.+.|++..+|++++||++|+|++++
T Consensus 76 ~~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 76 LEAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 555665443 4688999999999999999999999874
No 8
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.80 E-value=4.6e-19 Score=169.53 Aligned_cols=115 Identities=17% Similarity=0.257 Sum_probs=101.2
Q ss_pred hhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-----CCHHHH
Q 018332 148 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-----RDHKEF 221 (358)
Q Consensus 148 ~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-----~~~~~~ 221 (358)
+..+|+|.+ +.+|+.+.++ +||+|+|+|||+||++|+.++|.|.+++++++. .++.||+|+++ .+.+.+
T Consensus 35 ~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~---~~v~VI~Vs~~~~~~e~~~~~~ 109 (521)
T PRK14018 35 PHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKF---SSANLITVASPGFLHEKKDGDF 109 (521)
T ss_pred cCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEecccccccccHHHH
Confidence 457899998 9999998887 899999999999999999999999999999975 67999999873 334677
Q ss_pred HHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018332 222 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
.+++..+.+..+|+..|....+++.|+|.++|+++|||++|+|+.+
T Consensus 110 ~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~ 155 (521)
T PRK14018 110 QKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRI 155 (521)
T ss_pred HHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence 7777777777788887888899999999999999999999999988
No 9
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.79 E-value=3.2e-19 Score=141.57 Aligned_cols=116 Identities=30% Similarity=0.566 Sum_probs=102.7
Q ss_pred hhhccCCcee-cCCCceeeecccCCcEEEEEEecc-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018332 147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 224 (358)
Q Consensus 147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 224 (358)
+|.++|+|.+ +.+|+.+++++++||+++|.||++ ||+.|...++.|++++++|+. .++.+++|+.|.. ++..++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~---~~~~vi~is~d~~-~~~~~~ 76 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD---KGVQVIGISTDDP-EEIKQF 76 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT---TTEEEEEEESSSH-HHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhcc---ceEEeeecccccc-cchhhh
Confidence 5889999999 899999999999999999999999 999999999999999999986 7999999999754 455666
Q ss_pred hhcCCccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018332 225 HSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 267 (358)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 267 (358)
....+ ..+|+..|....+.+.|++. .+|+++|||++|+|+++
T Consensus 77 ~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 77 LEEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 65444 56777777889999999998 99999999999999874
No 10
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.79 E-value=4.5e-19 Score=150.53 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=94.1
Q ss_pred HhhhhccCCcee-cCC--Cceeeeccc-CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018332 145 QLLAIEGRDYVL-SRD--HRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 220 (358)
Q Consensus 145 ~~~~~~~p~f~l-~~~--g~~~~l~~~-~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~ 220 (358)
...|..+|+|.+ +.+ |+.++++.+ +||+++|+||++||++|+.++|.|.++.+ .+++|++|+.+.+.+.
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~-------~~~~vi~v~~~~~~~~ 111 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA-------QGIRVVGMNYKDDRQK 111 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH-------cCCEEEEEECCCCHHH
Confidence 456888999998 666 466666665 79999999999999999999999987743 4688999999888887
Q ss_pred HHHhhhcCCccccc-cCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018332 221 FDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 268 (358)
Q Consensus 221 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 268 (358)
..+++.++.. .+| ...|....+.+.|++.++|++++||++|+|++++
T Consensus 112 ~~~~~~~~~~-~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 112 AISWLKELGN-PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred HHHHHHHcCC-CCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 8888876553 333 2445567788999999999999999999999884
No 11
>PTZ00102 disulphide isomerase; Provisional
Probab=99.78 E-value=2.3e-18 Score=168.04 Aligned_cols=94 Identities=16% Similarity=0.316 Sum_probs=69.4
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.||+|+|+|||+||++|+.+.|.|.++++.+++ ...+.++.+..+.. ...++.|+
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~v~~~~id~~~~-----------------------~~~~~~~~ 428 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD--NDSIIVAKMNGTAN-----------------------ETPLEEFS 428 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCcEEEEEEECCCC-----------------------ccchhcCC
Confidence 478999999999999999999999999998873 23466666666543 45678899
Q ss_pred CCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCC
Q 018332 249 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDA 301 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~ 301 (358)
++++||+++++++|++..+ +.|... .+.+.+.+++....
T Consensus 429 v~~~Pt~~~~~~~~~~~~~-------~~G~~~-------~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 429 WSAFPTILFVKAGERTPIP-------YEGERT-------VEGFKEFVNKHATN 467 (477)
T ss_pred CcccCeEEEEECCCcceeE-------ecCcCC-------HHHHHHHHHHcCCC
Confidence 9999999999877765322 234322 45666667666543
No 12
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.78 E-value=9.2e-19 Score=139.62 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=95.0
Q ss_pred ccCCcee-cCCC--ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhh
Q 018332 150 EGRDYVL-SRDH--RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 226 (358)
Q Consensus 150 ~~p~f~l-~~~g--~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~ 226 (358)
.+|+|.+ +.+| +.+++++++||+++|+||++||++|+.++|.|+++.+++ +++|++|+.+.+.+.+.+++.
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~------~~~vv~v~~~~~~~~~~~~~~ 75 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG------RVPIYGINYKDNPENALAWLA 75 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc------CcEEEEEECCCCHHHHHHHHH
Confidence 5788988 7777 889999999999999999999999999999999987654 388999999888888888887
Q ss_pred cCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018332 227 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
.+.....+...|....+++.|++.++|++++||++|+++.+
T Consensus 76 ~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 76 RHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred hcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEE
Confidence 65532223444556789999999999999999999999987
No 13
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.78 E-value=3.8e-18 Score=143.27 Aligned_cols=146 Identities=16% Similarity=0.296 Sum_probs=116.2
Q ss_pred hhccCCcee-cCCCceeeeccc-CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018332 148 AIEGRDYVL-SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 218 (358)
Q Consensus 148 ~~~~p~f~l-~~~g~~~~l~~~-~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 218 (358)
|..+|+|.+ +.+|+.++++++ ++|++||+||++||+.|..+++.|.+++++|++ .++.|++|++|. +.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~---~~v~~v~is~d~~~~~~~d~~ 77 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA---KGVAVVAINSNDIEAYPEDSP 77 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh---CCeEEEEEecCccccccccCH
Confidence 456889998 889999999998 899999999999999999999999999999985 789999999985 46
Q ss_pred HHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCC-CchhhHHHHHHHHHH
Q 018332 219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFP-FTESRIAEIETALKK 297 (358)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p-~~~~~~~~L~~~l~~ 297 (358)
+.+.++...+.. .+|+..|....+.+.|++..+|+++|+|++|+|++..+. +..... .......+|.++++.
T Consensus 78 ~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~------~~~~~~~~~~~~~~~~~~~i~~ 150 (171)
T cd02969 78 ENMKAKAKEHGY-PFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRI------DDSRPGNDPPVTGRDLRAALDA 150 (171)
T ss_pred HHHHHHHHHCCC-CceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecc------cCCcccccccccHHHHHHHHHH
Confidence 788888876654 367777778899999999999999999999999987531 111000 122345567777777
Q ss_pred hcCCCC
Q 018332 298 EGDALP 303 (358)
Q Consensus 298 ~~~~~~ 303 (358)
.+..-+
T Consensus 151 ~l~~~~ 156 (171)
T cd02969 151 LLAGKP 156 (171)
T ss_pred HHcCCC
Confidence 665544
No 14
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.77 E-value=2.5e-18 Score=149.40 Aligned_cols=120 Identities=19% Similarity=0.259 Sum_probs=93.2
Q ss_pred HhhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-------C
Q 018332 145 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------R 216 (358)
Q Consensus 145 ~~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~ 216 (358)
...+..+|+|.+ +.+|+.+++++++||++||+||++||++|..++|.|++++++|++ .+++||+|++| .
T Consensus 73 ~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~---~Gv~VIgV~~d~~~~~e~~ 149 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT---QGFEILAFPCNQFGGQEPG 149 (236)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc---CCcEEEEEecccccccCCC
Confidence 346788999999 899999999999999999999999999999999999999999986 78999999975 2
Q ss_pred CHHHHHHhhh-cCCccccccCc--hhHH-HHHHHc-------C------CCceeeEEEECCCCcEEecC
Q 018332 217 DHKEFDLNHS-IMPWLAIPYED--RARQ-DLCRIF-------N------IKGIPALVLIGPDGKTISTN 268 (358)
Q Consensus 217 ~~~~~~~~~~-~~~~~~~~~~~--~~~~-~l~~~~-------~------v~~~P~~~lid~~G~v~~~~ 268 (358)
+.++..+++. .++ +.+|+.. |.+. .+...| + +...|+.+|||++|+|+.+.
T Consensus 150 s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~ 217 (236)
T PLN02399 150 SNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERY 217 (236)
T ss_pred CHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEE
Confidence 4456677663 332 3455532 2111 222222 2 35579999999999999883
No 15
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.77 E-value=1.3e-18 Score=138.50 Aligned_cols=105 Identities=21% Similarity=0.297 Sum_probs=92.9
Q ss_pred CceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-----CCHHHHHHhhhcCCccccc
Q 018332 160 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-----RDHKEFDLNHSIMPWLAIP 234 (358)
Q Consensus 160 g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~~~~~~~~ 234 (358)
|+++++++++||+++|+||++||++|..++|.|++++++|++ .++.|++|+.+ .+.+.+.++...+. +.+|
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~---~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p 88 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD---DGLVVIGVHSPEFAFERDLANVKSAVLRYG-ITYP 88 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc---CCeEEEEeccCccccccCHHHHHHHHHHcC-CCCC
Confidence 578999999999999999999999999999999999999986 78999999863 45677778777665 3577
Q ss_pred cCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018332 235 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 268 (358)
Q Consensus 235 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 268 (358)
+..|....+.+.|++.++|++++||++|+|+++.
T Consensus 89 ~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 89 VANDNDYATWRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred EEECCchHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence 7778888999999999999999999999999884
No 16
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.77 E-value=4.1e-18 Score=143.41 Aligned_cols=118 Identities=24% Similarity=0.441 Sum_probs=105.9
Q ss_pred hhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018332 146 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 224 (358)
Q Consensus 146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 224 (358)
..|..+|+|.+ +.+|+.+++++++||+++|+||++||++|+...+.|.++++++++ .++.+++|+.|.+.+.+..+
T Consensus 36 ~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~---~~~~vi~i~~d~~~~~~~~~ 112 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE---KGVEIIAVNVDETELAVKNF 112 (173)
T ss_pred CCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc---CCeEEEEEEcCCCHHHHHHH
Confidence 35788999998 899999999999999999999999999999999999999999985 67999999999998888888
Q ss_pred hhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018332 225 HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
.+.++ ..+|+..+....+.+.|++..+|+++++|++|+++..
T Consensus 113 ~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 113 VNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HHHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 87665 3566666777899999999999999999999999976
No 17
>PLN02412 probable glutathione peroxidase
Probab=99.77 E-value=2.1e-18 Score=143.80 Aligned_cols=116 Identities=16% Similarity=0.266 Sum_probs=89.7
Q ss_pred hccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHH
Q 018332 149 IEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKE 220 (358)
Q Consensus 149 ~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~ 220 (358)
..+|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|++ .++.|++|++|. +.++
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~---~g~~vvgv~~~~~~~~~~~~~~~ 83 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE---QGFEILAFPCNQFLGQEPGSNEE 83 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh---CCcEEEEecccccccCCCCCHHH
Confidence 56899998 899999999999999999999999999999999999999999986 789999999863 3445
Q ss_pred HHHhh-hcCCccccccCch--hH-HHHHHHcC-------------CCceeeEEEECCCCcEEecC
Q 018332 221 FDLNH-SIMPWLAIPYEDR--AR-QDLCRIFN-------------IKGIPALVLIGPDGKTISTN 268 (358)
Q Consensus 221 ~~~~~-~~~~~~~~~~~~~--~~-~~l~~~~~-------------v~~~P~~~lid~~G~v~~~~ 268 (358)
..+++ ..+. +.+|...+ .. ......|+ +.+.|+.+|||++|+|+.+.
T Consensus 84 ~~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 84 IQQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred HHHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence 55554 3332 44555321 11 12222222 66689999999999999883
No 18
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.76 E-value=3.3e-18 Score=143.76 Aligned_cols=116 Identities=19% Similarity=0.234 Sum_probs=93.8
Q ss_pred HhhhhccCCcee-cCCCc--eeeeccc-CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018332 145 QLLAIEGRDYVL-SRDHR--KITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 220 (358)
Q Consensus 145 ~~~~~~~p~f~l-~~~g~--~~~l~~~-~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~ 220 (358)
..+|..+|+|++ +.+|+ .++++.+ +||+++|+||++||++|+.++|.++++++ .+++|++|+.+.+.++
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~-------~~~~vi~V~~~~~~~~ 106 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK-------DGLPIVGVDYKDQSQN 106 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH-------cCCEEEEEECCCChHH
Confidence 456889999998 77776 4554565 68999999999999999999999877643 4588999999877777
Q ss_pred HHHhhhcCCccccc-cCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018332 221 FDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 268 (358)
Q Consensus 221 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 268 (358)
..+++..+.+ .+| +..|....+.+.|++.++|++++||++|+++++.
T Consensus 107 ~~~~~~~~~~-~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 154 (173)
T TIGR00385 107 ALKFLKELGN-PYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRH 154 (173)
T ss_pred HHHHHHHcCC-CCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEE
Confidence 7777776653 333 3446667899999999999999999999999883
No 19
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.76 E-value=8.8e-18 Score=143.00 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=91.8
Q ss_pred hhhhccCCcee-cCCCceeeec--ccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018332 146 LLAIEGRDYVL-SRDHRKITVS--ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 222 (358)
Q Consensus 146 ~~~~~~p~f~l-~~~g~~~~l~--~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 222 (358)
-+|.++|+|++ +.+|+.++++ ..+||+++|+||++||++|+.++|.+.++++++ ++.+++|+.| +.++..
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------~~~vv~Is~~-~~~~~~ 119 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------ETDVVMISDG-TPAEHR 119 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc------CCcEEEEeCC-CHHHHH
Confidence 46888999999 8999999994 578999999999999999999999999987653 3578888854 566777
Q ss_pred HhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018332 223 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
++.++++....++. ....+.+.|++..+|+.++||++|+|+++
T Consensus 120 ~~~~~~~~~~~~~~--~~~~i~~~y~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 120 RFLKDHELGGERYV--VSAEIGMAFQVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred HHHHhcCCCcceee--chhHHHHhccCCccceEEEECCCCeEEEc
Confidence 77776553222222 24678899999999999999999999986
No 20
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.76 E-value=4e-18 Score=148.22 Aligned_cols=172 Identities=16% Similarity=0.200 Sum_probs=104.4
Q ss_pred cCCCCEEEEEEeC---CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecc
Q 018332 39 SCGGKTICLFFSA---NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDY 115 (358)
Q Consensus 39 ~~~gk~vlv~F~a---~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 115 (358)
..++...++.|++ +||++|+.+.|.++++++++.. +++..+++|.++. .+++.+|
T Consensus 16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~----~~i~~v~vd~~~~------------------~~l~~~~ 73 (215)
T TIGR02187 16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK----LKLEIYDFDTPED------------------KEEAEKY 73 (215)
T ss_pred hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC----ceEEEEecCCccc------------------HHHHHHc
Confidence 3455555666877 9999999999999999998732 5677788775433 2567777
Q ss_pred ccCCCCcchHhHH-H-----HHhhhhhhhccchhhHhhhhccCCceecCCCc-eeeecccCCcEEEEEEeccCCcccHhh
Q 018332 116 GADAYPFTRKRRE-E-----LKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHR-KITVSELAGKTIGLYFGAHWCPPCRSF 188 (358)
Q Consensus 116 gi~~~P~~~~~~~-~-----~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~-~~~l~~~~~k~vlv~F~a~wC~~C~~~ 188 (358)
+|.++|+...... . +.+..........+..+++...+.-. ++.+ .-.+..+.+..+++.||++||++|+..
T Consensus 74 ~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~--L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~ 151 (215)
T TIGR02187 74 GVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPG--LSEKTVELLQSLDEPVRIEVFVTPTCPYCPYA 151 (215)
T ss_pred CCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCC--CCHHHHHHHHhcCCCcEEEEEECCCCCCcHHH
Confidence 7777775432111 0 11111111111122222221111111 1111 111223444556667999999999999
Q ss_pred HHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCc
Q 018332 189 TSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 263 (358)
Q Consensus 189 ~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~ 263 (358)
.+.+.++..+. .++.+..+..+. ...++++|+|.++||+++. .+|+
T Consensus 152 ~~~l~~l~~~~-----~~i~~~~vD~~~-----------------------~~~~~~~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 152 VLMAHKFALAN-----DKILGEMIEANE-----------------------NPDLAEKYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred HHHHHHHHHhc-----CceEEEEEeCCC-----------------------CHHHHHHhCCccCCEEEEe-cCCE
Confidence 99888877664 345555565554 3678899999999999987 5565
No 21
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.76 E-value=2.2e-18 Score=141.72 Aligned_cols=113 Identities=15% Similarity=0.228 Sum_probs=89.1
Q ss_pred cCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHHHH
Q 018332 151 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFD 222 (358)
Q Consensus 151 ~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~ 222 (358)
.|+|.+ +.+|+.+++++++||+|+|+||++||+ |..++|.|++++++|++ .++.|++|+++. +.+...
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~---~~~~vv~v~~~~~~~~~~~~~~~~~ 77 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD---RGLVVLGFPCNQFGGQEPGSNEEIK 77 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC---CCEEEEEeccCccccCCCCCHHHHH
Confidence 478888 899999999999999999999999999 99999999999999986 789999998753 346677
Q ss_pred Hhhhc-CCccccccCchh--HH-HHHHHcC--CCcee-----------eEEEECCCCcEEecC
Q 018332 223 LNHSI-MPWLAIPYEDRA--RQ-DLCRIFN--IKGIP-----------ALVLIGPDGKTISTN 268 (358)
Q Consensus 223 ~~~~~-~~~~~~~~~~~~--~~-~l~~~~~--v~~~P-----------~~~lid~~G~v~~~~ 268 (358)
++++. ++ +.+|+..+. .. .....|+ +.++| +.+|||++|+|+.+.
T Consensus 78 ~f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~ 139 (152)
T cd00340 78 EFCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRF 139 (152)
T ss_pred HHHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEE
Confidence 77765 33 456665331 11 1334444 35566 799999999999883
No 22
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.76 E-value=5.1e-18 Score=145.21 Aligned_cols=118 Identities=13% Similarity=0.176 Sum_probs=91.2
Q ss_pred hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-------CCH
Q 018332 147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDH 218 (358)
Q Consensus 147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~ 218 (358)
.+..+|+|++ +.+|+.+++++++||+|||+||++||++|+.++|.|++++++|++ .++.|++|+++ .+.
T Consensus 15 ~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~---~g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 15 LRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP---LGLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc---CceEEEEecchhccCCCCCCH
Confidence 3567899998 899999999999999999999999999999999999999999986 78999999974 345
Q ss_pred HHHHHhhhcCCccccccCch------hHHH--------HHHHcCCC----ce---eeEEEECCCCcEEecC
Q 018332 219 KEFDLNHSIMPWLAIPYEDR------ARQD--------LCRIFNIK----GI---PALVLIGPDGKTISTN 268 (358)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~------~~~~--------l~~~~~v~----~~---P~~~lid~~G~v~~~~ 268 (358)
++..++++.++ +.+|+..+ .... +...|++. .+ |+.+|||++|+|+.+.
T Consensus 92 e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~ 161 (199)
T PTZ00056 92 KDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF 161 (199)
T ss_pred HHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence 67788877554 34454321 1111 22234432 23 3799999999999874
No 23
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.75 E-value=1.4e-17 Score=139.03 Aligned_cols=116 Identities=13% Similarity=0.144 Sum_probs=98.7
Q ss_pred hhhccCCcee-cCCCceeeecccCCcEEEEEEeccC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018332 147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 224 (358)
Q Consensus 147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 224 (358)
+|..+|+|.+ +.+|+.+++++++||+++|+||++| |++|..++|.|+++++++ .+++|++|+.|.. ....++
T Consensus 20 ~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-----~~~~vv~vs~D~~-~~~~~f 93 (167)
T PRK00522 20 VGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-----DNTVVLCISADLP-FAQKRF 93 (167)
T ss_pred CCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-----CCcEEEEEeCCCH-HHHHHH
Confidence 5888999998 8899999999999999999999999 999999999999998887 3589999999853 445666
Q ss_pred hhcCCccccccCch-hHHHHHHHcCCCcee---------eEEEECCCCcEEecC
Q 018332 225 HSIMPWLAIPYEDR-ARQDLCRIFNIKGIP---------ALVLIGPDGKTISTN 268 (358)
Q Consensus 225 ~~~~~~~~~~~~~~-~~~~l~~~~~v~~~P---------~~~lid~~G~v~~~~ 268 (358)
...++...+++..| ....+++.||+...| +.++||++|+|++.+
T Consensus 94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~ 147 (167)
T PRK00522 94 CGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE 147 (167)
T ss_pred HHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence 66665434677776 456999999998777 999999999999884
No 24
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.74 E-value=1.9e-17 Score=134.90 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=98.6
Q ss_pred hhhccCCcee-cCCCceeeecccCCcEEEEEEeccC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018332 147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 224 (358)
Q Consensus 147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 224 (358)
+|..+|+|.+ +.+|+.+++++++||+++|+||++| |++|+.+++.|.++++++ .++.|++|++|. .+...++
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-----~~~~vi~Is~d~-~~~~~~~ 75 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-----DNTVVLTISADL-PFAQKRW 75 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-----CCCEEEEEECCC-HHHHHHH
Confidence 4778999998 8999999999999999999999998 699999999999999987 358999999986 4455666
Q ss_pred hhcCCccccccCchhH-HHHHHHcCCCc------eeeEEEECCCCcEEecC
Q 018332 225 HSIMPWLAIPYEDRAR-QDLCRIFNIKG------IPALVLIGPDGKTISTN 268 (358)
Q Consensus 225 ~~~~~~~~~~~~~~~~-~~l~~~~~v~~------~P~~~lid~~G~v~~~~ 268 (358)
...+....++...|.. ..+.+.|++.. .|+.++||++|+|+..+
T Consensus 76 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 76 CGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred HHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence 6666655677777765 88999999864 79999999999999884
No 25
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.74 E-value=3.5e-17 Score=137.62 Aligned_cols=119 Identities=18% Similarity=0.302 Sum_probs=98.2
Q ss_pred hhhccCCcee-cCCC----ceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH-
Q 018332 147 LAIEGRDYVL-SRDH----RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK- 219 (358)
Q Consensus 147 ~~~~~p~f~l-~~~g----~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~- 219 (358)
+|.++|+|.+ +.+| +.+++++++||+++|+|| ++||++|..+++.|++++++|.+ .++.|++|++|....
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~---~~v~vv~Is~d~~~~~ 77 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK---LNAEVLGVSTDSHFSH 77 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEecCCHHHH
Confidence 4788999998 6666 789999999999999999 89999999999999999999986 789999999986432
Q ss_pred -HHHHhhhc---CCccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018332 220 -EFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 268 (358)
Q Consensus 220 -~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 268 (358)
.|.+.... ..-+.+++..|....+++.|++. .+|+.+|||++|+|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 78 LAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred HHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 23333221 12245677778889999999986 688999999999999984
No 26
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.73 E-value=2.7e-17 Score=139.72 Aligned_cols=120 Identities=23% Similarity=0.303 Sum_probs=98.0
Q ss_pred hhhhccCCcee-c-CCCc--eeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018332 146 LLAIEGRDYVL-S-RDHR--KITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 218 (358)
Q Consensus 146 ~~~~~~p~f~l-~-~~g~--~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 218 (358)
.+|.++|+|.+ + .+|+ .+++++++||+++|+|| ++||++|..+++.|+++++++++ .+++|++|+.|...
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~---~gv~vi~VS~D~~~~~ 79 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKK---LGVEVYSVSTDTHFVH 79 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHH
Confidence 46889999998 5 4666 57888999999999999 99999999999999999999986 78999999999742
Q ss_pred HHHHHhhhcCCccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018332 219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 268 (358)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 268 (358)
+.|.+.......+.+|+..|....+++.||+. ..|+.++||++|+|++..
T Consensus 80 ~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 80 KAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred HHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 23333322222345677778889999999986 469999999999999874
No 27
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.7e-17 Score=154.47 Aligned_cols=58 Identities=17% Similarity=0.380 Sum_probs=50.5
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS 98 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~ 98 (358)
...+++|.||||||+||+.++|+++++++.+++.++++.++.|++......+.+|...
T Consensus 41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~ 98 (493)
T KOG0190|consen 41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVR 98 (493)
T ss_pred cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCC
Confidence 3579999999999999999999999999999999888888888887666667777666
No 28
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.73 E-value=2.6e-17 Score=135.75 Aligned_cols=116 Identities=20% Similarity=0.294 Sum_probs=99.5
Q ss_pred hhhccCCcee-cCCCceeeecccCCcEEEEEEecc-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018332 147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 224 (358)
Q Consensus 147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 224 (358)
+|..+|+|.+ +.+|+.+++++++||+++|+||++ ||+.|..+++.|.++++++++ .+++||+|+.|. .+...++
T Consensus 6 ~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~---~~v~vi~Is~d~-~~~~~~~ 81 (154)
T PRK09437 6 AGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK---AGVVVLGISTDK-PEKLSRF 81 (154)
T ss_pred CCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHHH
Confidence 4788999998 899999999999999999999986 677899999999999999986 789999999984 5777777
Q ss_pred hhcCCccccccCchhHHHHHHHcCCCce------------eeEEEECCCCcEEec
Q 018332 225 HSIMPWLAIPYEDRARQDLCRIFNIKGI------------PALVLIGPDGKTIST 267 (358)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~------------P~~~lid~~G~v~~~ 267 (358)
.+.++ ..+|+..|....+.+.|++... |+.+|||++|+|+..
T Consensus 82 ~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 82 AEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred HHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 77654 3566666777889999998654 778999999999988
No 29
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.73 E-value=2.8e-17 Score=133.26 Aligned_cols=113 Identities=26% Similarity=0.419 Sum_probs=99.8
Q ss_pred ccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhc
Q 018332 150 EGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI 227 (358)
Q Consensus 150 ~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 227 (358)
++|+|.+ +.+|+.+++++++||+++|+|| ++||+.|..+++.|.++++++.+ .++.|++|+.|. .+.+.++...
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vv~is~d~-~~~~~~~~~~ 77 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA---LGAVVIGVSPDS-VESHAKFAEK 77 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHHHHHH
Confidence 5788998 8899999999999999999999 58999999999999999999986 789999999984 5667777776
Q ss_pred CCccccccCchhHHHHHHHcCCCce---------eeEEEECCCCcEEec
Q 018332 228 MPWLAIPYEDRARQDLCRIFNIKGI---------PALVLIGPDGKTIST 267 (358)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~v~~~ 267 (358)
++ ..+|+..|....+.+.|++... |+.++||++|+|++.
T Consensus 78 ~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 78 YG-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred hC-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 55 3567777777899999999988 999999999999988
No 30
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.72 E-value=7.3e-17 Score=136.20 Aligned_cols=120 Identities=18% Similarity=0.292 Sum_probs=98.5
Q ss_pred hhhhccCCcee----cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018332 146 LLAIEGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 218 (358)
Q Consensus 146 ~~~~~~p~f~l----~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~-- 218 (358)
.+|.++|+|.. +.+...+++++++||+++|+|| +.||+.|..+++.|.+++++|.+ .+++|++|+.|...
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~---~g~~vigIS~D~~~~~ 79 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK---LGVDVYSVSTDTHFTH 79 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEeCCCHHHH
Confidence 57899999997 3444567788999999999999 99999999999999999999986 88999999998643
Q ss_pred HHHHHhhhcCCccccccCchhHHHHHHHcCC----Cce--eeEEEECCCCcEEecC
Q 018332 219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNI----KGI--PALVLIGPDGKTISTN 268 (358)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v----~~~--P~~~lid~~G~v~~~~ 268 (358)
..|.+.......+.+|+..|....+++.||+ .++ |++++||++|+|++..
T Consensus 80 ~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~ 135 (187)
T PRK10382 80 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE 135 (187)
T ss_pred HHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEE
Confidence 3344333222335678888889999999998 355 9999999999999884
No 31
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.72 E-value=6.5e-17 Score=132.61 Aligned_cols=117 Identities=18% Similarity=0.249 Sum_probs=98.5
Q ss_pred hhhccCCcee-cCCCceeeecccCC-cEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHH
Q 018332 147 LAIEGRDYVL-SRDHRKITVSELAG-KTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 223 (358)
Q Consensus 147 ~~~~~p~f~l-~~~g~~~~l~~~~~-k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 223 (358)
+|.++|+|.+ +.+|+.+++++++| |+++|.|| ++||+.|...+|.|+++++++++ .++.+++|+.|. .+...+
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~v~vi~vs~d~-~~~~~~ 78 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA---AGAEVLGISVDS-PFSLRA 78 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh---CCCEEEEecCCC-HHHHHH
Confidence 4788999998 88999999999999 99888887 99999999999999999999986 789999999885 455666
Q ss_pred hhhcCCccccccCchhH--HHHHHHcCCCc----e--eeEEEECCCCcEEecC
Q 018332 224 NHSIMPWLAIPYEDRAR--QDLCRIFNIKG----I--PALVLIGPDGKTISTN 268 (358)
Q Consensus 224 ~~~~~~~~~~~~~~~~~--~~l~~~~~v~~----~--P~~~lid~~G~v~~~~ 268 (358)
+.+.++ +.+|+..|.. ..+.+.|++.. + |++++||++|+|+++.
T Consensus 79 ~~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~ 130 (149)
T cd03018 79 WAEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAW 130 (149)
T ss_pred HHHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEE
Confidence 666554 4567666655 88999999873 3 4899999999999884
No 32
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.72 E-value=7.7e-17 Score=136.55 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=88.3
Q ss_pred hhccCCcee-cCCCceeeecccCCcEE-EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018332 148 AIEGRDYVL-SRDHRKITVSELAGKTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH 218 (358)
Q Consensus 148 ~~~~p~f~l-~~~g~~~~l~~~~~k~v-lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~ 218 (358)
....|+|++ +.+|+.+++++++||++ ++.+|++||++|+.++|.|++++++|++ .++.|++|++|. +.
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~---~gv~vv~vs~~~~~~~~~~~~ 93 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS---QGLEILAFPCNQFMEQEPWDE 93 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh---CCcEEEEEecccccccCCCCH
Confidence 456789998 89999999999999965 5566999999999999999999999986 789999999752 33
Q ss_pred HHHHHhhh-cCCccccccCch--hH----HHHH----H--------HcCCCceee---EEEECCCCcEEecC
Q 018332 219 KEFDLNHS-IMPWLAIPYEDR--AR----QDLC----R--------IFNIKGIPA---LVLIGPDGKTISTN 268 (358)
Q Consensus 219 ~~~~~~~~-~~~~~~~~~~~~--~~----~~l~----~--------~~~v~~~P~---~~lid~~G~v~~~~ 268 (358)
+...+++. .++ +.+|...+ .. ..+. . .+++.++|+ .+|||++|+|+.+.
T Consensus 94 ~~~~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~ 164 (183)
T PTZ00256 94 PEIKEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF 164 (183)
T ss_pred HHHHHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence 56666664 333 34554422 11 1222 1 236778995 69999999999884
No 33
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.71 E-value=8.4e-17 Score=125.18 Aligned_cols=110 Identities=28% Similarity=0.518 Sum_probs=98.0
Q ss_pred cee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC-HHHHHHhhhcCCcc
Q 018332 154 YVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLNHSIMPWL 231 (358)
Q Consensus 154 f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~ 231 (358)
|.+ +.+|+.++++++++|+++|+||++||++|+..++.|.++.+++.. .++.+++|++|.. .+.+..++..++ .
T Consensus 2 ~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~~v~~d~~~~~~~~~~~~~~~-~ 77 (116)
T cd02966 2 FSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKD---DGVEVVGVNVDDDDPAAVKAFLKKYG-I 77 (116)
T ss_pred ccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCC---CCeEEEEEECCCCCHHHHHHHHHHcC-C
Confidence 455 788999999999999999999999999999999999999999874 7799999999987 889999988776 5
Q ss_pred ccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018332 232 AIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 232 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
.+++..+....+.+.|++.++|+++++|++|+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 78 TFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred CcceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 666666667889999999999999999999999876
No 34
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.70 E-value=8.5e-17 Score=132.48 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=85.4
Q ss_pred Ccee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-------CCHHHHHHh
Q 018332 153 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHKEFDLN 224 (358)
Q Consensus 153 ~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~ 224 (358)
+|++ +.+|+.+++++++||+++|+||++||++|..++|.|++++++|++ .++.|++|+++ .+.+...++
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~---~~~~v~~i~~~~~~~~~~d~~~~~~~f 80 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP---SHFNVLAFPCNQFGESEPDSSKEIESF 80 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh---CCeEEEEEeccccccCCCCCHHHHHHH
Confidence 4666 789999999999999999999999999999999999999999986 78999999852 345667777
Q ss_pred hhc-CCccccccCch-----hHHHHHHHcC---CCceee----EEEECCCCcEEecC
Q 018332 225 HSI-MPWLAIPYEDR-----ARQDLCRIFN---IKGIPA----LVLIGPDGKTISTN 268 (358)
Q Consensus 225 ~~~-~~~~~~~~~~~-----~~~~l~~~~~---v~~~P~----~~lid~~G~v~~~~ 268 (358)
.+. ++ +.+|...+ ........|. ..++|+ .+|||++|+|+.+.
T Consensus 81 ~~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~ 136 (153)
T TIGR02540 81 ARRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFW 136 (153)
T ss_pred HHHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEE
Confidence 754 33 34555322 1111111232 236898 99999999999883
No 35
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.3e-17 Score=153.47 Aligned_cols=175 Identities=20% Similarity=0.372 Sum_probs=116.3
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
.+++++|.||+|||+||+.+.|.|.+++..++.. +.+..|+++.+. .+|++|+|.+|
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~~~vd~~~~~--------------------~~~~~y~i~gf 102 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKIGAVDCDEHK--------------------DLCEKYGIQGF 102 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEEEEeCchhhH--------------------HHHHhcCCccC
Confidence 4689999999999999999999999999999874 445444444433 68999999999
Q ss_pred CcchHhHHHH-HhhhhhhhccchhhHhhhhccCCcee-cCCCceeeec--cc------CCcEEEEEEeccCCcccHhhHH
Q 018332 121 PFTRKRREEL-KAIDDSKRQGGKLEQLLAIEGRDYVL-SRDHRKITVS--EL------AGKTIGLYFGAHWCPPCRSFTS 190 (358)
Q Consensus 121 P~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~p~f~l-~~~g~~~~l~--~~------~~k~vlv~F~a~wC~~C~~~~~ 190 (358)
|+........ ...+...+.+..+.........+-.. ...++.+.+. .+ ....++|.|+++||++|+.+.|
T Consensus 103 Ptl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~ 182 (383)
T KOG0191|consen 103 PTLKVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAP 182 (383)
T ss_pred cEEEEEcCCCceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcCh
Confidence 9754333320 11111222233333322222111111 1111122221 11 2467999999999999999999
Q ss_pred HHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCc
Q 018332 191 QLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 263 (358)
Q Consensus 191 ~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~ 263 (358)
.+.++...++. ...+.+..+..+. ...++..++|.++|++.++-++.+
T Consensus 183 ~~~~~a~~~~~--~~~v~~~~~d~~~-----------------------~~~~~~~~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 183 EWEKLAKLLKS--KENVELGKIDATV-----------------------HKSLASRLEVRGYPTLKLFPPGEE 230 (383)
T ss_pred HHHHHHHHhcc--CcceEEEeeccch-----------------------HHHHhhhhcccCCceEEEecCCCc
Confidence 99999998862 3566666665552 478899999999999999955555
No 36
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.69 E-value=3.8e-16 Score=134.18 Aligned_cols=118 Identities=19% Similarity=0.250 Sum_probs=97.7
Q ss_pred hhhccCCcee-cCCCceeeecccCCcEEEE-EEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HHHH
Q 018332 147 LAIEGRDYVL-SRDHRKITVSELAGKTIGL-YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEFD 222 (358)
Q Consensus 147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~~ 222 (358)
+|..+|+|.+ +..| .+++++++||+++| +||++||+.|..+++.|.++++++++ .+++|++|++|... .+|.
T Consensus 4 vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~---~~~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 4 LGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK---LGVELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHHH
Confidence 5888999998 5555 79999999997766 68999999999999999999999986 78999999999753 3444
Q ss_pred Hhhh-cCC-ccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018332 223 LNHS-IMP-WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 268 (358)
Q Consensus 223 ~~~~-~~~-~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 268 (358)
+.+. ..+ .+.+|+..|....+++.||+. .+|+++|||++|+|++..
T Consensus 80 ~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~ 133 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMI 133 (202)
T ss_pred HhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEE
Confidence 4332 333 256888888889999999984 589999999999999773
No 37
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.68 E-value=3.2e-16 Score=127.05 Aligned_cols=114 Identities=21% Similarity=0.306 Sum_probs=98.4
Q ss_pred cCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcC
Q 018332 151 GRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM 228 (358)
Q Consensus 151 ~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 228 (358)
+|+|.+ +.+|+.+++++++||+++|+|| ++||+.|...++.|.+++++++. .++.+++|+.|. .+...++...+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~~~~i~is~d~-~~~~~~~~~~~ 77 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK---GGAEVLGVSVDS-PFSHKAWAEKE 77 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCCC-HHHHHHHHhcc
Confidence 688998 8999999999999999999999 78999999999999999999975 789999999874 55667777766
Q ss_pred CccccccCchhHHHHHHHcCCCcee---------eEEEECCCCcEEecC
Q 018332 229 PWLAIPYEDRARQDLCRIFNIKGIP---------ALVLIGPDGKTISTN 268 (358)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~~~v~~~P---------~~~lid~~G~v~~~~ 268 (358)
+-..+++..|....+.+.|++...| +.++||++|+|++++
T Consensus 78 ~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 78 GGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred cCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 3456677777778999999987655 899999999999984
No 38
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.68 E-value=2.3e-16 Score=124.96 Aligned_cols=106 Identities=20% Similarity=0.378 Sum_probs=90.7
Q ss_pred CCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC-HHHHHHhhhcCC
Q 018332 152 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLNHSIMP 229 (358)
Q Consensus 152 p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~ 229 (358)
|+|.+ +.+|+.+++..++||+++|+||++||++|+.++|.|.++++++ .+++|++|.+ .+.+.++.+.+.
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~--------~~i~i~~~~~~~~~~~~~~~~~~ 72 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADY--------PVVSVALRSGDDGAVARFMQKKG 72 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhC--------CEEEEEccCCCHHHHHHHHHHcC
Confidence 67887 8899999999999999999999999999999999999987764 4788888764 677788777665
Q ss_pred ccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018332 230 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
+.+|...+....+.+.|++.++|+++++|++| ++++
T Consensus 73 -~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~ 108 (123)
T cd03011 73 -YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFV 108 (123)
T ss_pred -CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEE
Confidence 45666666678899999999999999999999 8766
No 39
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.67 E-value=5.7e-16 Score=133.82 Aligned_cols=119 Identities=15% Similarity=0.122 Sum_probs=101.5
Q ss_pred hhhhccCCcee-cCCCceeeecccCCcEE-EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC--HHHH
Q 018332 146 LLAIEGRDYVL-SRDHRKITVSELAGKTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--HKEF 221 (358)
Q Consensus 146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~v-lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~--~~~~ 221 (358)
.+|..+|+|.+ +.+|+...+++++||++ |++||++|||.|..+++.|.+++++|++ .+++|++|++|.. ...|
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~---~gv~vigIS~D~~~~~~~w 79 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKE---LNTELIGLSVDQVFSHIKW 79 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHH
Confidence 57899999998 78888877789999975 6799999999999999999999999986 7899999999975 3557
Q ss_pred HHhhhcC--CccccccCchhHHHHHHHcCCC-------ceeeEEEECCCCcEEec
Q 018332 222 DLNHSIM--PWLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTIST 267 (358)
Q Consensus 222 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~ 267 (358)
.++++.. .-+.+|...|....+++.||+. .+|+++|||++|+|+..
T Consensus 80 ~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 80 VEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred HHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 6666542 1356788888888999999983 68999999999999987
No 40
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.67 E-value=5.2e-16 Score=126.13 Aligned_cols=116 Identities=27% Similarity=0.535 Sum_probs=94.7
Q ss_pred cCCcee-cCCCceeeecccCCcEEEEEEeccCCcc-cHhhHHHHHHHHHHhhcccC-CceEEEEEeCCCC---HHHHHHh
Q 018332 151 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTAN-HCFEVVLVSTDRD---HKEFDLN 224 (358)
Q Consensus 151 ~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~-~~~~vv~v~~d~~---~~~~~~~ 224 (358)
+|+|++ +.+|+.+++.+++||+++|+||++||++ |..+++.|.++++++++ .+ .++++++|+.|.. .+.+.++
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~-~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA-DGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH-hhcCceEEEEEEECCCCCCHHHHHHH
Confidence 688998 8999999999999999999999999998 99999999999999985 11 3599999999853 4667777
Q ss_pred hhcCC--ccccccCchhHHHHHHHcCCCce--------------eeEEEECCCCcEEec
Q 018332 225 HSIMP--WLAIPYEDRARQDLCRIFNIKGI--------------PALVLIGPDGKTIST 267 (358)
Q Consensus 225 ~~~~~--~~~~~~~~~~~~~l~~~~~v~~~--------------P~~~lid~~G~v~~~ 267 (358)
.+.++ |..+....+....+++.||+... |+++|||++|+|+..
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 81 AKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 77653 44444444445789999997654 468999999999976
No 41
>PRK15000 peroxidase; Provisional
Probab=99.67 E-value=8.2e-16 Score=131.64 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=96.2
Q ss_pred hhhhccCCcee-cC--CCcee---eeccc-CCcEEEEEEecc-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018332 146 LLAIEGRDYVL-SR--DHRKI---TVSEL-AGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD 217 (358)
Q Consensus 146 ~~~~~~p~f~l-~~--~g~~~---~l~~~-~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~ 217 (358)
++|.++|+|.+ +. +|+.+ +++++ +||+++|+||+. ||+.|..+++.|.+++++|++ .+++|++|++|..
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~---~g~~vigvS~D~~ 79 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK---RGVEVVGVSFDSE 79 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCCH
Confidence 47899999998 43 34543 44444 799999999995 999999999999999999986 7899999999964
Q ss_pred H--HHHHHhhh-cCC--ccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018332 218 H--KEFDLNHS-IMP--WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN 268 (358)
Q Consensus 218 ~--~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 268 (358)
. ..|.+... ... -+.+|...|....+++.||+. .+|+.++||++|+|++..
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~ 141 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQV 141 (200)
T ss_pred HHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEE
Confidence 3 44544332 222 257888888889999999997 799999999999999873
No 42
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.4e-15 Score=122.47 Aligned_cols=116 Identities=21% Similarity=0.336 Sum_probs=100.4
Q ss_pred hhhccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018332 147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 224 (358)
Q Consensus 147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 224 (358)
+|.++|+|++ +.+|+.++|++++||+|+|+|| ..++|.|..++-.|+..+.++.. .+.+|++||.|.. ..-+++
T Consensus 6 ~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~---~~a~V~GIS~Ds~-~~~~~F 81 (157)
T COG1225 6 VGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK---LGAVVLGISPDSP-KSHKKF 81 (157)
T ss_pred CCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh---CCCEEEEEeCCCH-HHHHHH
Confidence 5899999999 9999999999999999999998 47888899999999999999987 7999999999954 444555
Q ss_pred hhcCCccccccCchhHHHHHHHcCCC------------ceeeEEEECCCCcEEec
Q 018332 225 HSIMPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST 267 (358)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 267 (358)
..++. +.+|..+|....++++||+- ..++.+|||++|+|++.
T Consensus 82 ~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~ 135 (157)
T COG1225 82 AEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYV 135 (157)
T ss_pred HHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEE
Confidence 55444 56899999999999999983 35789999999999987
No 43
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.66 E-value=6.9e-16 Score=128.63 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=87.4
Q ss_pred CceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEE------EEEeCCCCHHHHHHhhh-------
Q 018332 160 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEV------VLVSTDRDHKEFDLNHS------- 226 (358)
Q Consensus 160 g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~v------v~v~~d~~~~~~~~~~~------- 226 (358)
.+.++.++++||+++|+|||+||++|+.+.|.+.++.+ .++.+ ++|+.|++......+++
T Consensus 49 y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~-------~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~ 121 (184)
T TIGR01626 49 YQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA-------AKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGK 121 (184)
T ss_pred ceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH-------cCCCcccccceEEEECccchhhHHHHHHHHHHHhc
Confidence 44667788999999999999999999999999999833 44666 88999876544333332
Q ss_pred -cCCccccccCchhHHHHHHHcCCCceeeE-EEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHh
Q 018332 227 -IMPWLAIPYEDRARQDLCRIFNIKGIPAL-VLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE 298 (358)
Q Consensus 227 -~~~~~~~~~~~~~~~~l~~~~~v~~~P~~-~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~ 298 (358)
.+||. ++..|....+...|++.++|+. ++||++|+|+++. .|. .+++.++++...++++
T Consensus 122 ~~~P~~--~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~-------~G~----l~~ee~e~~~~li~~l 182 (184)
T TIGR01626 122 KENPWS--QVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVK-------EGA----LSDSDIQTVISLVNGL 182 (184)
T ss_pred ccCCcc--eEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEE-------eCC----CCHHHHHHHHHHHHHH
Confidence 23332 3556667788899999999988 8999999999984 453 3344445555555544
No 44
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.66 E-value=1.5e-15 Score=122.98 Aligned_cols=97 Identities=18% Similarity=0.353 Sum_probs=77.3
Q ss_pred cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018332 168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 247 (358)
Q Consensus 168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (358)
..||+++|+||++||++|+.+.|.|.++++++. ..+.|+.|.+|.+. ...+++.|
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~----~~~~~v~v~vd~~~---------------------~~~~~~~~ 72 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG----DQVNFVMLNVDNPK---------------------WLPEIDRY 72 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc----cCeeEEEEEcCCcc---------------------cHHHHHHc
Confidence 368999999999999999999999999999986 45788999888642 24678899
Q ss_pred CCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCCCC
Q 018332 248 NIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP 303 (358)
Q Consensus 248 ~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~ 303 (358)
+|.++|++++||++|+++.+ ..|... .++|.+.+++...+.|
T Consensus 73 ~V~~iPt~v~~~~~G~~v~~-------~~G~~~-------~~~l~~~l~~l~~~~~ 114 (142)
T cd02950 73 RVDGIPHFVFLDREGNEEGQ-------SIGLQP-------KQVLAQNLDALVAGEP 114 (142)
T ss_pred CCCCCCEEEEECCCCCEEEE-------EeCCCC-------HHHHHHHHHHHHcCCC
Confidence 99999999999999999987 345332 3455666666655444
No 45
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.65 E-value=7.2e-16 Score=161.42 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=98.2
Q ss_pred hhhccCCcee-c--CCCceeee-cccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeC---CC--C
Q 018332 147 LAIEGRDYVL-S--RDHRKITV-SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST---DR--D 217 (358)
Q Consensus 147 ~~~~~p~f~l-~--~~g~~~~l-~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~---d~--~ 217 (358)
.+..+|+|.. . .+|+++++ ++++||+|||+|||+||++|+.++|.|++++++|++ .++.|++|+. |. +
T Consensus 393 ~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~---~~~~vvgV~~~~~D~~~~ 469 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD---QPFTVVGVHSAKFDNEKD 469 (1057)
T ss_pred cCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC---CCeEEEEEeccccccccc
Confidence 3677899986 2 67888887 589999999999999999999999999999999975 6799999974 33 4
Q ss_pred HHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018332 218 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
.+.+.+++..++ +.+|...|....+.+.|++.++|+++|||++|+++.+
T Consensus 470 ~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 470 LEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred HHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEE
Confidence 566777777555 3456666667789999999999999999999999987
No 46
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.64 E-value=8.1e-16 Score=125.96 Aligned_cols=113 Identities=22% Similarity=0.449 Sum_probs=93.2
Q ss_pred cCCcee-cCCCceeeecccC-Cc-EEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhc
Q 018332 151 GRDYVL-SRDHRKITVSELA-GK-TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI 227 (358)
Q Consensus 151 ~p~f~l-~~~g~~~~l~~~~-~k-~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 227 (358)
+|+|++ +.+|+.++++++. ++ .+|++||++||++|+.+++.|.++++++++ .++.|++|+.|... ....+...
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~---~~v~vv~V~~~~~~-~~~~~~~~ 77 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA---LGVELVAVGPESPE-KLEAFDKG 77 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh---cCeEEEEEeCCCHH-HHHHHHHh
Confidence 688988 8899999998875 35 555556799999999999999999999986 78999999988654 33344444
Q ss_pred CCccccccCchhHHHHHHHcCCC-----------------------------ceeeEEEECCCCcEEecC
Q 018332 228 MPWLAIPYEDRARQDLCRIFNIK-----------------------------GIPALVLIGPDGKTISTN 268 (358)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~G~v~~~~ 268 (358)
. .+.+|+..|....+.+.|++. .+|+.+|||++|+|++.+
T Consensus 78 ~-~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 78 K-FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred c-CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 4 357888888889999999984 799999999999999874
No 47
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.63 E-value=3.6e-15 Score=128.91 Aligned_cols=119 Identities=13% Similarity=0.202 Sum_probs=97.6
Q ss_pred hhhhccCCcee-cCCCceeee-cccCCcEEEE-EEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH--H
Q 018332 146 LLAIEGRDYVL-SRDHRKITV-SELAGKTIGL-YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK--E 220 (358)
Q Consensus 146 ~~~~~~p~f~l-~~~g~~~~l-~~~~~k~vlv-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~--~ 220 (358)
.+|.++|+|.+ +.+|+ +.+ +.++||+++| +||++||+.|..+++.|.+++++|+. .+++|++|++|.... .
T Consensus 8 ~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~---~g~~VigvS~Ds~~~h~a 83 (215)
T PRK13191 8 LIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK---LNTELIGLSVDSNISHIE 83 (215)
T ss_pred cCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEECCCHHHHHH
Confidence 57899999998 66776 555 5579997665 88999999999999999999999987 789999999997643 5
Q ss_pred HHHhhhcC-C-ccccccCchhHHHHHHHcCCC-------ceeeEEEECCCCcEEecC
Q 018332 221 FDLNHSIM-P-WLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTISTN 268 (358)
Q Consensus 221 ~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~~ 268 (358)
|.++.... . -+.+|...|....+++.||+. ..|+++|||++|+|++..
T Consensus 84 w~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 140 (215)
T PRK13191 84 WVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLIL 140 (215)
T ss_pred HHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEE
Confidence 66655531 1 356788888889999999973 479999999999999873
No 48
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.63 E-value=4.1e-15 Score=127.98 Aligned_cols=118 Identities=14% Similarity=0.189 Sum_probs=94.7
Q ss_pred hhhccCCcee-cCCCceeeecccCC-cEE-EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HHH
Q 018332 147 LAIEGRDYVL-SRDHRKITVSELAG-KTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEF 221 (358)
Q Consensus 147 ~~~~~p~f~l-~~~g~~~~l~~~~~-k~v-lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~ 221 (358)
+|..+|+|.+ +.+| .+++++++| |++ |++||++||+.|..+++.|.+++++|++ .+++|++|++|... .+|
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~---~gv~vigvS~D~~~~~~~~ 76 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK---RNVKLIGLSVDSVESHIKW 76 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEECCCHHHHHHH
Confidence 4778999998 5666 589999988 654 5689999999999999999999999986 88999999999743 334
Q ss_pred HHhhhcC--CccccccCchhHHHHHHHcCCC--------ceeeEEEECCCCcEEecC
Q 018332 222 DLNHSIM--PWLAIPYEDRARQDLCRIFNIK--------GIPALVLIGPDGKTISTN 268 (358)
Q Consensus 222 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~--------~~P~~~lid~~G~v~~~~ 268 (358)
.+.+..+ ..+.+|+..|....+++.||+. ..|+.+|||++|+|++..
T Consensus 77 ~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~ 133 (203)
T cd03016 77 IEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLIL 133 (203)
T ss_pred HhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEE
Confidence 4433322 2356788888889999999985 246799999999999873
No 49
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.63 E-value=3.1e-15 Score=131.74 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=98.3
Q ss_pred HhhhhccCCcee-c-CCC--ceeeeccc-CCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC-
Q 018332 145 QLLAIEGRDYVL-S-RDH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD- 217 (358)
Q Consensus 145 ~~~~~~~p~f~l-~-~~g--~~~~l~~~-~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~- 217 (358)
.++|.++|+|.+ + .+| ..++++++ +||+++|+|| +.||++|..+++.|.+++++|++ .+++|++|++|..
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~---~gv~VigIS~Ds~~ 144 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE---RGVKVLGVSVDSPF 144 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCCHH
Confidence 367999999997 4 344 45899998 8888888877 89999999999999999999987 8899999999973
Q ss_pred -HHHHHHh-hhcC--CccccccCchhHHHHHHHcCCC-----ceeeEEEECCCCcEEecC
Q 018332 218 -HKEFDLN-HSIM--PWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN 268 (358)
Q Consensus 218 -~~~~~~~-~~~~--~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~~ 268 (358)
...|.+. .+.. ..+.+|+..|....+++.||+. ..|+.+|||++|+|++..
T Consensus 145 ~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 145 SHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred HHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence 3445443 2221 2356888888889999999985 589999999999999874
No 50
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.63 E-value=9.4e-16 Score=127.00 Aligned_cols=96 Identities=18% Similarity=0.271 Sum_probs=78.5
Q ss_pred hccCCceecCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcC
Q 018332 149 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM 228 (358)
Q Consensus 149 ~~~p~f~l~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 228 (358)
...|+|.+ .+|+.+++++++ +|+||++||++|++++|.|++++++|+ +.|++|++|.+.+
T Consensus 53 ~~~~~f~l-~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g------~~Vi~Vs~D~~~~--------- 112 (181)
T PRK13728 53 PAPRWFRL-SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG------FSVFPYTLDGQGD--------- 112 (181)
T ss_pred CCCCccCC-CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC------CEEEEEEeCCCCC---------
Confidence 35667775 589999999987 777999999999999999999999874 7999999986531
Q ss_pred CccccccCch-hHHHHHHHcCC--CceeeEEEECCCCcEEe
Q 018332 229 PWLAIPYEDR-ARQDLCRIFNI--KGIPALVLIGPDGKTIS 266 (358)
Q Consensus 229 ~~~~~~~~~~-~~~~l~~~~~v--~~~P~~~lid~~G~v~~ 266 (358)
..+|...+ ....+.+.|++ .++|+.||||++|+++.
T Consensus 113 --~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 --TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred --CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 35666543 45667888995 69999999999999975
No 51
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.62 E-value=1.2e-15 Score=122.30 Aligned_cols=97 Identities=40% Similarity=0.834 Sum_probs=78.4
Q ss_pred ccccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccc
Q 018332 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLI 104 (358)
Q Consensus 26 ~~l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~ 104 (358)
+||++.+|+ +++++++||+|+|+||++||++|+.++|.+.++++++.+.+.+++++.|++|.+++.+.++........+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 578999999 9999999999999999999999999999999999999876556999999999888888777655322111
Q ss_pred ---c-cccceeeeccccCCCCc
Q 018332 105 ---E-EDLIGLIEDYGADAYPF 122 (358)
Q Consensus 105 ---~-~~~~~l~~~~gi~~~P~ 122 (358)
. +....+++.|++.++|+
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~ 102 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPT 102 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCE
Confidence 1 12245667778777775
No 52
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.62 E-value=9.7e-15 Score=125.39 Aligned_cols=119 Identities=18% Similarity=0.293 Sum_probs=97.8
Q ss_pred hhhhccCCcee-----cCCCceeeecccCCcEEEEEEec-cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018332 146 LLAIEGRDYVL-----SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK 219 (358)
Q Consensus 146 ~~~~~~p~f~l-----~~~g~~~~l~~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~ 219 (358)
.+|.++|+|.+ +.+|+.+++++++||+++|+||+ .||+.|..+++.|.+++++|+. .+++|++|++|....
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~---~g~~vv~IS~d~~~~ 83 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE---LNCEVLACSMDSEYA 83 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEeCCCHHH
Confidence 46889999985 34567899999999999999995 8899999999999999999987 899999999997643
Q ss_pred H--HHHhhhc---CCccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018332 220 E--FDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 267 (358)
Q Consensus 220 ~--~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 267 (358)
. |...... ..-+.+|+..|....+++.||+. .+|+.+|||++|+|+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~ 142 (199)
T PTZ00253 84 HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQI 142 (199)
T ss_pred HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEE
Confidence 2 2211111 22367888888899999999985 47999999999999986
No 53
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.60 E-value=2.8e-15 Score=120.70 Aligned_cols=89 Identities=20% Similarity=0.390 Sum_probs=71.6
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcC-----CCceEEEEEEecCChhHHHHHHhhCCCc-----cc
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR-----GTELEVIFISFDHDENGFEEHFKSSDGT-----LI 104 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~-----~~~~~iv~i~~d~~~~~~~~~~~~~~~~-----~~ 104 (358)
+++++++||+|+|+|||+||++|++++|.|.+++++++++ ++++++++|+.|.+++.+.+|....... +.
T Consensus 18 ~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~ 97 (146)
T cd03008 18 EIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFE 97 (146)
T ss_pred ccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeeccc
Confidence 4678999999999999999999999999999999988763 3459999999998888888887775422 22
Q ss_pred ccccceeeeccccCCCCcc
Q 018332 105 EEDLIGLIEDYGADAYPFT 123 (358)
Q Consensus 105 ~~~~~~l~~~~gi~~~P~~ 123 (358)
......+.+.|++.++|++
T Consensus 98 ~~~~~~l~~~y~v~~iPt~ 116 (146)
T cd03008 98 DEFRRELEAQFSVEELPTV 116 (146)
T ss_pred chHHHHHHHHcCCCCCCEE
Confidence 2223467888899888864
No 54
>PRK13189 peroxiredoxin; Provisional
Probab=99.59 E-value=1.8e-14 Score=125.27 Aligned_cols=118 Identities=15% Similarity=0.240 Sum_probs=95.1
Q ss_pred hhhhccCCcee-cCCCceeeecc-cCCcEEE-EEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HH
Q 018332 146 LLAIEGRDYVL-SRDHRKITVSE-LAGKTIG-LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KE 220 (358)
Q Consensus 146 ~~~~~~p~f~l-~~~g~~~~l~~-~~~k~vl-v~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~ 220 (358)
.+|..+|+|.+ +..|. +++++ ++||+++ ++||++||+.|..+++.|.+++++|++ .+++|++|++|... .+
T Consensus 10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~---~~v~VigvS~D~~~~h~a 85 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE---LNTELIGLSIDQVFSHIK 85 (222)
T ss_pred cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEECCCHHHHHH
Confidence 46899999998 66664 67776 4898554 578999999999999999999999986 88999999999754 34
Q ss_pred HHHhhhc-CC-ccccccCchhHHHHHHHcCCC-------ceeeEEEECCCCcEEec
Q 018332 221 FDLNHSI-MP-WLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTIST 267 (358)
Q Consensus 221 ~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~ 267 (358)
|.+.+.. .+ -+.+|...|....+++.||+. .+|+++|||++|+|+..
T Consensus 86 w~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 141 (222)
T PRK13189 86 WVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI 141 (222)
T ss_pred HHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence 5544332 12 256778888889999999975 57999999999999877
No 55
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.1e-14 Score=114.91 Aligned_cols=77 Identities=25% Similarity=0.551 Sum_probs=66.8
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.+.+|+|+|||+||+||+.+.|.|+++..+|. ..+.+.-|++|.. .+++.+|+
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~----g~~k~~kvdtD~~-----------------------~ela~~Y~ 112 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYA----GKFKLYKVDTDEH-----------------------PELAEDYE 112 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhc----CeEEEEEEccccc-----------------------cchHhhcc
Confidence 35899999999999999999999999999997 7788888888875 68999999
Q ss_pred CCceeeEEEECCCCcEEecCcchhhhhcCCCC
Q 018332 249 IKGIPALVLIGPDGKTISTNGKEMISLYGAKA 280 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~ 280 (358)
|.++||+++| ++|+.+.+ +.|...
T Consensus 113 I~avPtvlvf-knGe~~d~-------~vG~~~ 136 (150)
T KOG0910|consen 113 ISAVPTVLVF-KNGEKVDR-------FVGAVP 136 (150)
T ss_pred eeeeeEEEEE-ECCEEeee-------ecccCC
Confidence 9999999999 77777644 566554
No 56
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.57 E-value=1.7e-14 Score=110.56 Aligned_cols=72 Identities=18% Similarity=0.438 Sum_probs=63.4
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.+++|+|+|||+||++|+.+.|.|.+++++++ +.+.++-|++|.. ..+++.|+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~----~~v~f~kVDvD~~-----------------------~~la~~~~ 65 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS----NFAVIYLVDIDEV-----------------------PDFNKMYE 65 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcc----CceEEEEEECCCC-----------------------HHHHHHcC
Confidence 46799999999999999999999999999986 4467777877764 68999999
Q ss_pred CCceeeEEEECCCCcEEecC
Q 018332 249 IKGIPALVLIGPDGKTISTN 268 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~~ 268 (358)
|.++||++++ ++|+.+.+.
T Consensus 66 V~~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 66 LYDPPTVMFF-FRNKHMKID 84 (114)
T ss_pred CCCCCEEEEE-ECCEEEEEE
Confidence 9999999999 899988774
No 57
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.55 E-value=4.4e-14 Score=108.11 Aligned_cols=74 Identities=20% Similarity=0.379 Sum_probs=62.5
Q ss_pred cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018332 168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 247 (358)
Q Consensus 168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (358)
.+||+|+|+||++||++|+.+.|.|.++++++. ++.++.|+.|.+.+ ...++++|
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~-----~v~~~~vd~d~~~~--------------------~~~l~~~~ 67 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN-----DVVFLLVNGDENDS--------------------TMELCRRE 67 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----CCEEEEEECCCChH--------------------HHHHHHHc
Confidence 458999999999999999999999999999883 36777777775421 25789999
Q ss_pred CCCceeeEEEECCCCcEEec
Q 018332 248 NIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 248 ~v~~~P~~~lid~~G~v~~~ 267 (358)
+|.++||++++ ++|+++.+
T Consensus 68 ~V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 68 KIIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred CCCcCCEEEEE-eCCeEEEE
Confidence 99999998888 89998876
No 58
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.55 E-value=7.6e-14 Score=135.59 Aligned_cols=58 Identities=19% Similarity=0.410 Sum_probs=47.3
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS 98 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~ 98 (358)
++++++|.|||+||++|+.++|.+.++++.++..+.++.++.|+++...+.+.++...
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~ 74 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVS 74 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCc
Confidence 5789999999999999999999999999999877666888888887665545444433
No 59
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.53 E-value=2.9e-13 Score=113.63 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=63.3
Q ss_pred ccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-------CCHHHH
Q 018332 150 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHKEF 221 (358)
Q Consensus 150 ~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~~~ 221 (358)
..++|++ +.+|+.+++++++||++||.|||+||++|. .++.|++++++|++ .++.|++++++ .+.++.
T Consensus 4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~---~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWAD---QGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh---CCeEEEEeeccccccCCCCCHHHH
Confidence 3567777 899999999999999999999999999996 69999999999986 88999999985 345667
Q ss_pred HHhhh
Q 018332 222 DLNHS 226 (358)
Q Consensus 222 ~~~~~ 226 (358)
.++..
T Consensus 80 ~~f~~ 84 (183)
T PRK10606 80 KTYCR 84 (183)
T ss_pred HHHHH
Confidence 77775
No 60
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.53 E-value=2.3e-14 Score=114.91 Aligned_cols=97 Identities=38% Similarity=0.770 Sum_probs=75.6
Q ss_pred cccCCCCceecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC-ccc-
Q 018332 27 FLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG-TLI- 104 (358)
Q Consensus 27 ~l~~~~g~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~-~~~- 104 (358)
||+|.+..+++++++||+|+|+||++||++|+..+|.+.++++++++.+.++++++|++|.+....+++..+... ..+
T Consensus 2 ~~~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 2 FLLDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred ccccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 567777339999999999999999999999999999999999999876445999999999887777777766531 111
Q ss_pred -cc--ccceeeeccccCCCCcc
Q 018332 105 -EE--DLIGLIEDYGADAYPFT 123 (358)
Q Consensus 105 -~~--~~~~l~~~~gi~~~P~~ 123 (358)
.+ ....+.+.|++.++|+.
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~ 103 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTL 103 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEE
Confidence 11 12345667888888854
No 61
>PHA02278 thioredoxin-like protein
Probab=99.51 E-value=8.8e-14 Score=105.78 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=62.4
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.+++++|+|||+||++|+.+.|.+.++++++. .+..++.|++|.+.. + ...++++|+
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~----~~~~~~~vdvd~~~~------------------d-~~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGD----IKKPILTLNLDAEDV------------------D-REKAVKLFD 69 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc----CCceEEEEECCcccc------------------c-cHHHHHHCC
Confidence 56899999999999999999999999988754 345688888886420 0 257899999
Q ss_pred CCceeeEEEECCCCcEEec
Q 018332 249 IKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~ 267 (358)
|.++||++++ ++|+.+.+
T Consensus 70 I~~iPT~i~f-k~G~~v~~ 87 (103)
T PHA02278 70 IMSTPVLIGY-KDGQLVKK 87 (103)
T ss_pred CccccEEEEE-ECCEEEEE
Confidence 9999999999 88888877
No 62
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.51 E-value=1.1e-13 Score=112.82 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=58.3
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchh-HHHHHHHc-
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA-RQDLCRIF- 247 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~- 247 (358)
++..+|+||++||++|++++|.|++++++++ +.|++|++|.... . .+|...+. ...+...|
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~------~~Vi~Vs~d~~~~------~-----~fp~~~~~~~~~~~~~~~ 112 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG------LPVYAFSLDGQGL------T-----GFPDPLPATPEVMQTFFP 112 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC------CcEEEEEeCCCcc------c-----ccccccCCchHHHHHHhc
Confidence 3556999999999999999999999998874 5799999886431 1 12221111 12233455
Q ss_pred --CCCceeeEEEECCCCcEEe
Q 018332 248 --NIKGIPALVLIGPDGKTIS 266 (358)
Q Consensus 248 --~v~~~P~~~lid~~G~v~~ 266 (358)
++.++|++++||++|+++.
T Consensus 113 ~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 113 NPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred cCCCCCCCeEEEEeCCCCEEE
Confidence 8899999999999988654
No 63
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.51 E-value=2.3e-14 Score=114.17 Aligned_cols=97 Identities=34% Similarity=0.673 Sum_probs=83.5
Q ss_pred ccccCCCCc-eecc-cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcc
Q 018332 26 EFLLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTL 103 (358)
Q Consensus 26 ~~l~~~~g~-v~l~-~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~ 103 (358)
..|...+|. +-.+ .++||+|+++|.|.||+||+.|+|.+.+.|+++++.+++++||+||.|.++..+..|+....+..
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W 94 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDW 94 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCe
Confidence 567788888 6666 58999999999999999999999999999999999999999999999999999999999877743
Q ss_pred cc-----cccceeeeccccCCCCc
Q 018332 104 IE-----EDLIGLIEDYGADAYPF 122 (358)
Q Consensus 104 ~~-----~~~~~l~~~~gi~~~P~ 122 (358)
.. +.-.++.++|++.+.|.
T Consensus 95 ~~iPf~d~~~~~l~~ky~v~~iP~ 118 (157)
T KOG2501|consen 95 LAIPFGDDLIQKLSEKYEVKGIPA 118 (157)
T ss_pred EEecCCCHHHHHHHHhcccCcCce
Confidence 31 12246788888888885
No 64
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.50 E-value=1.9e-13 Score=104.37 Aligned_cols=71 Identities=18% Similarity=0.371 Sum_probs=61.0
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.+++++|+|||+||++|+.+.|.|.+++++++. ..+.++.++.| . ..++++|+
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~---~~~~~~~vd~d-~-----------------------~~~~~~~~ 68 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD---DLLHFATAEAD-T-----------------------IDTLKRYR 68 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC---CcEEEEEEeCC-C-----------------------HHHHHHcC
Confidence 478999999999999999999999999999863 45677777777 3 46789999
Q ss_pred CCceeeEEEECCCCcEEec
Q 018332 249 IKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~ 267 (358)
|+++||++++ ++|+.+.+
T Consensus 69 v~~~Pt~~~~-~~g~~~~~ 86 (102)
T cd02948 69 GKCEPTFLFY-KNGELVAV 86 (102)
T ss_pred CCcCcEEEEE-ECCEEEEE
Confidence 9999999999 78888876
No 65
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.49 E-value=1.8e-13 Score=106.12 Aligned_cols=73 Identities=22% Similarity=0.352 Sum_probs=63.5
Q ss_pred cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018332 168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 247 (358)
Q Consensus 168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (358)
..+++++|+||++||++|+.+.|.+.+++++++. .++.++.|++|.. ..++++|
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~d~~-----------------------~~l~~~~ 75 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP---LGVGIATVNAGHE-----------------------RRLARKL 75 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh---cCceEEEEecccc-----------------------HHHHHHc
Confidence 3679999999999999999999999999999974 4677777877754 5788999
Q ss_pred CCCceeeEEEECCCCcEEec
Q 018332 248 NIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 248 ~v~~~P~~~lid~~G~v~~~ 267 (358)
+|.++|+++++ ++|+++.+
T Consensus 76 ~V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 76 GAHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred CCccCCEEEEE-ECCEEEEE
Confidence 99999999999 68888766
No 66
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.47 E-value=3.7e-13 Score=101.60 Aligned_cols=71 Identities=18% Similarity=0.368 Sum_probs=61.1
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
++++++|+||++||++|+.+.|.+.++++.+. ..+.++.|+++.. ..++++|+
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~l~~~~~ 63 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ----GQFVLAKVNCDAQ-----------------------PQIAQQFG 63 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhC----CcEEEEEEeccCC-----------------------HHHHHHcC
Confidence 47899999999999999999999999999986 4466777776653 68899999
Q ss_pred CCceeeEEEECCCCcEEec
Q 018332 249 IKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~ 267 (358)
|.++|++++++ +|+++.+
T Consensus 64 i~~~Pt~~~~~-~g~~~~~ 81 (96)
T cd02956 64 VQALPTVYLFA-AGQPVDG 81 (96)
T ss_pred CCCCCEEEEEe-CCEEeee
Confidence 99999999995 8887755
No 67
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.47 E-value=1.9e-13 Score=103.80 Aligned_cols=69 Identities=16% Similarity=0.354 Sum_probs=56.8
Q ss_pred cccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018332 166 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 245 (358)
Q Consensus 166 ~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (358)
++++||+++|.|||+||++|+.+.|.|.++++++++ +.++.|..+.. ...+++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-----~~~~~vd~~~~----------------------~~~l~~ 66 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-----IRHLAIEESSI----------------------KPSLLS 66 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-----CceEEEECCCC----------------------CHHHHH
Confidence 346899999999999999999999999999999852 55666654411 367899
Q ss_pred HcCCCceeeEEEECCC
Q 018332 246 IFNIKGIPALVLIGPD 261 (358)
Q Consensus 246 ~~~v~~~P~~~lid~~ 261 (358)
+|+|.++||+++++++
T Consensus 67 ~~~V~~~PT~~lf~~g 82 (100)
T cd02999 67 RYGVVGFPTILLFNST 82 (100)
T ss_pred hcCCeecCEEEEEcCC
Confidence 9999999999999543
No 68
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.7e-13 Score=102.42 Aligned_cols=69 Identities=22% Similarity=0.559 Sum_probs=59.9
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
+|.++|+|+|+|||||+.+.|.+.+|+.+|. + +.++.|++|. ...+++.|+|
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~----~-v~Flkvdvde-----------------------~~~~~~~~~V 72 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYP----D-VVFLKVDVDE-----------------------LEEVAKEFNV 72 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCC----C-CEEEEEeccc-----------------------CHhHHHhcCc
Confidence 6999999999999999999999999999997 3 6677777775 2789999999
Q ss_pred CceeeEEEECCCCcEEec
Q 018332 250 KGIPALVLIGPDGKTIST 267 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~~~ 267 (358)
..+||++++ ++|+.+.+
T Consensus 73 ~~~PTf~f~-k~g~~~~~ 89 (106)
T KOG0907|consen 73 KAMPTFVFY-KGGEEVDE 89 (106)
T ss_pred eEeeEEEEE-ECCEEEEE
Confidence 999999999 66666655
No 69
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.43 E-value=7.7e-13 Score=100.88 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=61.6
Q ss_pred cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018332 168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 247 (358)
Q Consensus 168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (358)
..+++++|.||++||++|+.+.|.+.+++++++ ..+.+..|++|.. ..++++|
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~ 68 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD----GVIRIGAVNCGDD-----------------------RMLCRSQ 68 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc----CceEEEEEeCCcc-----------------------HHHHHHc
Confidence 346899999999999999999999999999987 4577888888764 5789999
Q ss_pred CCCceeeEEEECCCCcEEec
Q 018332 248 NIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 248 ~v~~~P~~~lid~~G~v~~~ 267 (358)
+|+++||++++ ++|+.+.+
T Consensus 69 ~v~~~Pt~~~~-~~g~~~~~ 87 (101)
T cd03003 69 GVNSYPSLYVF-PSGMNPEK 87 (101)
T ss_pred CCCccCEEEEE-cCCCCccc
Confidence 99999999999 77875443
No 70
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.43 E-value=1e-12 Score=104.29 Aligned_cols=85 Identities=25% Similarity=0.491 Sum_probs=64.0
Q ss_pred CC-cEEEEEEeccCCcccHhhHHHHH---HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018332 169 AG-KTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 244 (358)
Q Consensus 169 ~~-k~vlv~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (358)
.+ |+++|+||++||++|+.+.+.+. .+.+.++ +++.++.|++|.+.... . ++........++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~ 77 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR----AHFVVVYINIDGDKEVT-D---------FDGEALSEKELA 77 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH----hheEEEEEEccCCceee-c---------cCCCCccHHHHH
Confidence 56 89999999999999999999875 5555554 56778888887653211 0 111112357899
Q ss_pred HHcCCCceeeEEEECCC-CcEEec
Q 018332 245 RIFNIKGIPALVLIGPD-GKTIST 267 (358)
Q Consensus 245 ~~~~v~~~P~~~lid~~-G~v~~~ 267 (358)
.+|++.++|+++++|++ |+++.+
T Consensus 78 ~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 78 RKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred HHcCCccccEEEEEcCCCCceeEE
Confidence 99999999999999999 898877
No 71
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.7e-13 Score=114.58 Aligned_cols=89 Identities=20% Similarity=0.468 Sum_probs=69.5
Q ss_pred cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018332 168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 247 (358)
Q Consensus 168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (358)
-.+|.|+|+|+|.||+||+...|.+..+..+|+. .|++.+|.+. .+..+..+
T Consensus 19 ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-------aVFlkVdVd~---------------------c~~taa~~ 70 (288)
T KOG0908|consen 19 AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-------AVFLKVDVDE---------------------CRGTAATN 70 (288)
T ss_pred cCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-------cEEEEEeHHH---------------------hhchhhhc
Confidence 3468999999999999999999999999999974 6677766554 67889999
Q ss_pred CCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcC
Q 018332 248 NIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD 300 (358)
Q Consensus 248 ~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~ 300 (358)
||.++||++++ ++|+ .+.++.|++ ...|++++.+.+.
T Consensus 71 gV~amPTFiff-~ng~-------kid~~qGAd--------~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 71 GVNAMPTFIFF-RNGV-------KIDQIQGAD--------ASGLEEKVAKYAS 107 (288)
T ss_pred CcccCceEEEE-ecCe-------EeeeecCCC--------HHHHHHHHHHHhc
Confidence 99999999999 4444 444467765 3455666665543
No 72
>PRK09381 trxA thioredoxin; Provisional
Probab=99.42 E-value=1.9e-12 Score=100.20 Aligned_cols=71 Identities=30% Similarity=0.577 Sum_probs=62.5
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.+++++|+||++||++|+.+.|.|+++++++. .++.++.+++|.. ..++++|+
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~ 72 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN-----------------------PGTAPKYG 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhC----CCcEEEEEECCCC-----------------------hhHHHhCC
Confidence 36899999999999999999999999999987 4578888888764 46788999
Q ss_pred CCceeeEEEECCCCcEEec
Q 018332 249 IKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~ 267 (358)
+.++|+++++ ++|+++.+
T Consensus 73 v~~~Pt~~~~-~~G~~~~~ 90 (109)
T PRK09381 73 IRGIPTLLLF-KNGEVAAT 90 (109)
T ss_pred CCcCCEEEEE-eCCeEEEE
Confidence 9999999999 79998876
No 73
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7e-13 Score=115.91 Aligned_cols=70 Identities=26% Similarity=0.527 Sum_probs=62.5
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
+.++|||+||+|||++|+.++|.|.++..+|+ ..+.++.|++|.+ ..++.+||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~----G~f~LakvN~D~~-----------------------p~vAaqfg 94 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK----GKFKLAKVNCDAE-----------------------PMVAAQFG 94 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhC----CceEEEEecCCcc-----------------------hhHHHHhC
Confidence 45799999999999999999999999999998 7788888888875 68999999
Q ss_pred CCceeeEEEECCCCcEEe
Q 018332 249 IKGIPALVLIGPDGKTIS 266 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~ 266 (358)
|+++|++|+| ++|+.+.
T Consensus 95 iqsIPtV~af-~dGqpVd 111 (304)
T COG3118 95 VQSIPTVYAF-KDGQPVD 111 (304)
T ss_pred cCcCCeEEEe-eCCcCcc
Confidence 9999999999 6666654
No 74
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.41 E-value=1.3e-12 Score=100.17 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=61.4
Q ss_pred CCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 245 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (358)
.+|+++|+||++||++|+.+.+.+ .++.+.++ +++.++.|+++.+. +....+++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~-------------------~~~~~~~~ 66 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK----KDVVLLRADWTKND-------------------PEITALLK 66 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh----CCeEEEEEecCCCC-------------------HHHHHHHH
Confidence 578999999999999999999887 56777775 46777777776432 11367889
Q ss_pred HcCCCceeeEEEECC-CCcEEec
Q 018332 246 IFNIKGIPALVLIGP-DGKTIST 267 (358)
Q Consensus 246 ~~~v~~~P~~~lid~-~G~v~~~ 267 (358)
+|++.++|+++++++ +|+++.+
T Consensus 67 ~~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 67 RFGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred HcCCCCCCEEEEECCCCCCCCcc
Confidence 999999999999988 8888766
No 75
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.1e-12 Score=105.32 Aligned_cols=120 Identities=22% Similarity=0.353 Sum_probs=101.7
Q ss_pred HhhhhccCCcee-cC-CCc---eeeecccCCcEEEEEEec-cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC-
Q 018332 145 QLLAIEGRDYVL-SR-DHR---KITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD- 217 (358)
Q Consensus 145 ~~~~~~~p~f~l-~~-~g~---~~~l~~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~- 217 (358)
.++|.++|+|.. .. .|. +++++++.||+++|+||. ...+.|..++..+.+.+.+|++ .+++|+++|+|..
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~---~g~eVigvS~Ds~f 79 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQK---RGVEVIGVSTDSVF 79 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHH---cCCEEEEEecCcHH
Confidence 468999999998 33 553 899999889999999985 4556699999999999999997 9999999999974
Q ss_pred -HHHHHHhhhcCCc---cccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018332 218 -HKEFDLNHSIMPW---LAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 267 (358)
Q Consensus 218 -~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 267 (358)
+..|.+...+... ..+|...|...++++.||+. .+..+++||++|+|++.
T Consensus 80 sH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~ 139 (194)
T COG0450 80 SHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHI 139 (194)
T ss_pred HHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEE
Confidence 5678888665443 78899999999999999984 57789999999999876
No 76
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.40 E-value=1.2e-13 Score=104.98 Aligned_cols=64 Identities=19% Similarity=0.369 Sum_probs=51.1
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018332 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA 117 (358)
Q Consensus 38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 117 (358)
++++||+|+|.|||+||+||++++|.|+++++.+.+ +.++.|+.+. .. ..++++|+|
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~-~~------------------~~l~~~~~V 70 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESS-IK------------------PSLLSRYGV 70 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCC-CC------------------HHHHHhcCC
Confidence 357899999999999999999999999999998853 4566655441 11 257899999
Q ss_pred CCCCcch
Q 018332 118 DAYPFTR 124 (358)
Q Consensus 118 ~~~P~~~ 124 (358)
.++|+..
T Consensus 71 ~~~PT~~ 77 (100)
T cd02999 71 VGFPTIL 77 (100)
T ss_pred eecCEEE
Confidence 9999754
No 77
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.40 E-value=1.1e-12 Score=126.06 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=75.4
Q ss_pred Cccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec-----CChhHHHHHH
Q 018332 24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-----HDENGFEEHF 96 (358)
Q Consensus 24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d-----~~~~~~~~~~ 96 (358)
-++| +.+.+|. ++++ +||+|+|+|||+||++|+.++|.|.+++++++..+ ++|+.|+.+ .+...+.++.
T Consensus 38 lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~~~~~~ 113 (521)
T PRK14018 38 LSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWY 113 (521)
T ss_pred CCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHHHHHHH
Confidence 3455 8899998 8887 79999999999999999999999999999987655 889888863 2334555555
Q ss_pred hhCCC---cccccccceeeeccccCCCCcc
Q 018332 97 KSSDG---TLIEEDLIGLIEDYGADAYPFT 123 (358)
Q Consensus 97 ~~~~~---~~~~~~~~~l~~~~gi~~~P~~ 123 (358)
..... .++.+....+.+.|+|.++|++
T Consensus 114 ~~~~y~~~pV~~D~~~~lak~fgV~giPTt 143 (521)
T PRK14018 114 AGLDYPKLPVLTDNGGTLAQSLNISVYPSW 143 (521)
T ss_pred HhCCCcccceeccccHHHHHHcCCCCcCeE
Confidence 44322 3455556688999999999975
No 78
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.38 E-value=6.3e-13 Score=102.78 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=51.6
Q ss_pred CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceee-eccccC
Q 018332 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLI-EDYGAD 118 (358)
Q Consensus 40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~gi~ 118 (358)
.++++++|.||||||+||+.++|.|+++++.+++. +.++.|++|.+. .++ ++|+|.
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~~--------------------~l~~~~~~I~ 83 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWPQ--------------------GKCRKQKHFF 83 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCCh--------------------HHHHHhcCCc
Confidence 35799999999999999999999999999999654 677777777554 467 589999
Q ss_pred CCCcch
Q 018332 119 AYPFTR 124 (358)
Q Consensus 119 ~~P~~~ 124 (358)
+||+..
T Consensus 84 ~~PTl~ 89 (113)
T cd03006 84 YFPVIH 89 (113)
T ss_pred ccCEEE
Confidence 999743
No 79
>PRK10996 thioredoxin 2; Provisional
Probab=99.38 E-value=4.5e-12 Score=102.32 Aligned_cols=71 Identities=27% Similarity=0.579 Sum_probs=61.0
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.+|+++|+||++||++|+.+.|.|.++++++. .++.++.|+++.. ..++++|+
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~ 103 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS----GKVRFVKVNTEAE-----------------------RELSARFR 103 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCeEEEEEeCCCC-----------------------HHHHHhcC
Confidence 47899999999999999999999999998876 4567777766643 67899999
Q ss_pred CCceeeEEEECCCCcEEec
Q 018332 249 IKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~ 267 (358)
|.++|+++++ ++|+++.+
T Consensus 104 V~~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 104 IRSIPTIMIF-KNGQVVDM 121 (139)
T ss_pred CCccCEEEEE-ECCEEEEE
Confidence 9999999998 68998876
No 80
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.38 E-value=1.1e-12 Score=102.60 Aligned_cols=76 Identities=21% Similarity=0.482 Sum_probs=58.2
Q ss_pred cccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018332 166 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 245 (358)
Q Consensus 166 ~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (358)
+..++|+|+|+||++||++|+.+.|.+.+...... ....++.|.+|.+. ....+
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~----~~~~fv~v~vd~~~----------------------~~~~~ 68 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE----LSHNFVMVNLEDDE----------------------EPKDE 68 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh----hcCcEEEEEecCCC----------------------Cchhh
Confidence 34468999999999999999999999988766543 22346667776542 23345
Q ss_pred HcCCCc--eeeEEEECCCCcEEec
Q 018332 246 IFNIKG--IPALVLIGPDGKTIST 267 (358)
Q Consensus 246 ~~~v~~--~P~~~lid~~G~v~~~ 267 (358)
.|++.+ +|+++++|++|+++.+
T Consensus 69 ~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 69 EFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred hcccCCCccceEEEECCCCCCchh
Confidence 778876 9999999999999875
No 81
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.38 E-value=2e-12 Score=100.80 Aligned_cols=64 Identities=23% Similarity=0.449 Sum_probs=52.0
Q ss_pred ccCCCCc-eecccCC-CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018332 28 LLSRQGK-VPLSSCG-GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH 95 (358)
Q Consensus 28 l~~~~g~-v~l~~~~-gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~ 95 (358)
+.+.+|+ +++++++ ||+++|+||++||++|+..+|.+.++++++... +.++.++ +.+.+...++
T Consensus 5 l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~-~~~~~~~~~~ 70 (114)
T cd02967 5 LTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLAS-DGEKAEHQRF 70 (114)
T ss_pred eecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEe-CCCHHHHHHH
Confidence 6778999 9999997 999999999999999999999999998887542 7777665 5454444444
No 82
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.37 E-value=1.9e-12 Score=115.90 Aligned_cols=88 Identities=23% Similarity=0.354 Sum_probs=69.7
Q ss_pred ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhH
Q 018332 161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR 240 (358)
Q Consensus 161 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (358)
+...+++++|+++||+||++||++|+.+.|.|++++++|+ +.|++|++|.... ..+|... .+
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg------~~Vi~VsvD~~~~-----------~~fp~~~-~d 218 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG------IEVLPVSVDGGPL-----------PGFPNAR-PD 218 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC------cEEEEEeCCCCcc-----------ccCCccc-CC
Confidence 3466788899999999999999999999999999999874 6899999987532 1133332 23
Q ss_pred HHHHHHcCCCceeeEEEECCCCcEEe
Q 018332 241 QDLCRIFNIKGIPALVLIGPDGKTIS 266 (358)
Q Consensus 241 ~~l~~~~~v~~~P~~~lid~~G~v~~ 266 (358)
..++++|||.++|+++|+|++|+.+.
T Consensus 219 ~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 219 AGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred HHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 56789999999999999999654443
No 83
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.37 E-value=4.1e-12 Score=104.49 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=92.7
Q ss_pred hhhccCCcee-cCC---Cceeeecc-cCCcEEE-EEEeccCCcccHhh-HHHHHHHHHHhhcccCCce-EEEEEeCCCCH
Q 018332 147 LAIEGRDYVL-SRD---HRKITVSE-LAGKTIG-LYFGAHWCPPCRSF-TSQLIEVYNELKTTANHCF-EVVLVSTDRDH 218 (358)
Q Consensus 147 ~~~~~p~f~l-~~~---g~~~~l~~-~~~k~vl-v~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~-~vv~v~~d~~~ 218 (358)
+|.++|+|.+ +.+ |+.+++++ ++||+++ ++|++.||+.|..+ ++.|.+.++++.+ .+. .|++|+.|...
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~---~g~~~V~~iS~D~~~ 77 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA---KGVDEVICVSVNDPF 77 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH---CCCCEEEEEECCCHH
Confidence 3778999998 553 89999999 5886554 55568999999999 9999999999986 777 69999999643
Q ss_pred HHHHHhhhcCCc-cccccCchhHHHHHHHcCCC-----------ceeeEEEECCCCcEEecC
Q 018332 219 KEFDLNHSIMPW-LAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN 268 (358)
Q Consensus 219 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~ 268 (358)
...++...+.. ..+|+..|....+++.||+. ..+.+++|| +|+|++..
T Consensus 78 -~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~ 137 (155)
T cd03013 78 -VMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLF 137 (155)
T ss_pred -HHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEE
Confidence 34555555544 46888888899999999983 146789999 69999763
No 84
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.37 E-value=2.5e-12 Score=99.43 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=57.9
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH-HHc
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC-RIF 247 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~ 247 (358)
.+++++|.|||+||++|+.+.|.+.+++++++ +.+.++.|++|.+ ..++ ++|
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~----~~v~~~~Vd~d~~-----------------------~~l~~~~~ 80 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS----DQVLFVAINCWWP-----------------------QGKCRKQK 80 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------------hHHHHHhc
Confidence 56899999999999999999999999999997 4477777877754 4666 689
Q ss_pred CCCceeeEEEECCCCcE
Q 018332 248 NIKGIPALVLIGPDGKT 264 (358)
Q Consensus 248 ~v~~~P~~~lid~~G~v 264 (358)
+|.++||++++ ++|+.
T Consensus 81 ~I~~~PTl~lf-~~g~~ 96 (113)
T cd03006 81 HFFYFPVIHLY-YRSRG 96 (113)
T ss_pred CCcccCEEEEE-ECCcc
Confidence 99999999999 67664
No 85
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.37 E-value=2.8e-12 Score=99.65 Aligned_cols=95 Identities=22% Similarity=0.463 Sum_probs=65.2
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.||+++++||++||++|+.+.+.+.+..+-... .+.++.++.+.++.+.+.........+. +.......++.+.|+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARY-LKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYG 79 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCE-EHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcC
Confidence 579999999999999999999988765442111 1256888889888765443333332211 222234568999999
Q ss_pred CCceeeEEEECCCCcEEec
Q 018332 249 IKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~ 267 (358)
|.++|+++++|++|+++.+
T Consensus 80 v~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp --SSSEEEECTTTSCEEEE
T ss_pred CCccCEEEEEcCCCCEEEE
Confidence 9999999999999998876
No 86
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.37 E-value=1.6e-12 Score=97.92 Aligned_cols=80 Identities=31% Similarity=0.677 Sum_probs=62.8
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC--cc-cc--cccceeeeccc
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG--TL-IE--EDLIGLIEDYG 116 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~--~~-~~--~~~~~l~~~~g 116 (358)
||+++|+||++||++|++..|.+.++++++++ +.++++|+|+.|.+.+.++++...... .. .. +....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 79999999999999999999999999999995 455999999999998899999888622 22 11 22346778888
Q ss_pred cCCCCc
Q 018332 117 ADAYPF 122 (358)
Q Consensus 117 i~~~P~ 122 (358)
+.+.|+
T Consensus 80 i~~iP~ 85 (95)
T PF13905_consen 80 INGIPT 85 (95)
T ss_dssp -TSSSE
T ss_pred CCcCCE
Confidence 888885
No 87
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.37 E-value=1.9e-12 Score=102.99 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=73.2
Q ss_pred ccc-ccCCCC--c-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCC
Q 018332 25 VEF-LLSRQG--K-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSD 100 (358)
Q Consensus 25 ~~~-l~~~~g--~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 100 (358)
++| +.+.+| . +++++++||+++|+||++||++|+.++|.+.++++.+ + ++++.|+.+.+...+.++.....
T Consensus 4 p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~--~~vv~v~~~~~~~~~~~~~~~~~ 78 (127)
T cd03010 4 PAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---R--VPIYGINYKDNPENALAWLARHG 78 (127)
T ss_pred CCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---C--cEEEEEECCCCHHHHHHHHHhcC
Confidence 445 667777 6 9999999999999999999999999999999987764 2 88999998877777777765533
Q ss_pred C---cccccccceeeeccccCCCCc
Q 018332 101 G---TLIEEDLIGLIEDYGADAYPF 122 (358)
Q Consensus 101 ~---~~~~~~~~~l~~~~gi~~~P~ 122 (358)
. .++.+....+++.|++.++|.
T Consensus 79 ~~~~~~~~D~~~~~~~~~~v~~~P~ 103 (127)
T cd03010 79 NPYAAVGFDPDGRVGIDLGVYGVPE 103 (127)
T ss_pred CCCceEEECCcchHHHhcCCCCCCe
Confidence 2 234455567788888888774
No 88
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.35 E-value=4.2e-12 Score=103.25 Aligned_cols=73 Identities=18% Similarity=0.391 Sum_probs=63.3
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
++++++|+||++||++|+.+.|.+.++++++.. .++.++.|++|.. .+++++|+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~---~~v~f~~VDvd~~-----------------------~~la~~~~ 99 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN---NNLKFGKIDIGRF-----------------------PNVAEKFR 99 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc---CCeEEEEEECCCC-----------------------HHHHHHcC
Confidence 457999999999999999999999999999864 5688888988875 57888888
Q ss_pred CCc------eeeEEEECCCCcEEecC
Q 018332 249 IKG------IPALVLIGPDGKTISTN 268 (358)
Q Consensus 249 v~~------~P~~~lid~~G~v~~~~ 268 (358)
|.+ +||++++ ++|+.+.+.
T Consensus 100 V~~~~~v~~~PT~ilf-~~Gk~v~r~ 124 (152)
T cd02962 100 VSTSPLSKQLPTIILF-QGGKEVARR 124 (152)
T ss_pred ceecCCcCCCCEEEEE-ECCEEEEEE
Confidence 877 9999999 789888764
No 89
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.35 E-value=2.8e-12 Score=99.89 Aligned_cols=68 Identities=22% Similarity=0.384 Sum_probs=57.1
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
+++++|+||++||++|+.+.|.|.++++++.. +.++-|..+ . . .++++|+|
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-----v~f~~vd~~--~---------------------~-~l~~~~~i 74 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-----TKFVKINAE--K---------------------A-FLVNYLDI 74 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-----cEEEEEEch--h---------------------h-HHHHhcCC
Confidence 58999999999999999999999999999853 445444443 2 3 78999999
Q ss_pred CceeeEEEECCCCcEEec
Q 018332 250 KGIPALVLIGPDGKTIST 267 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~~~ 267 (358)
.++||++++ ++|+.+.+
T Consensus 75 ~~~Pt~~~f-~~G~~v~~ 91 (113)
T cd02957 75 KVLPTLLVY-KNGELIDN 91 (113)
T ss_pred CcCCEEEEE-ECCEEEEE
Confidence 999999999 88988876
No 90
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.35 E-value=2e-12 Score=102.83 Aligned_cols=88 Identities=22% Similarity=0.295 Sum_probs=65.9
Q ss_pred Cc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec-----CChhHHHHHHhhCCC--ccc
Q 018332 33 GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-----HDENGFEEHFKSSDG--TLI 104 (358)
Q Consensus 33 g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d-----~~~~~~~~~~~~~~~--~~~ 104 (358)
|+ +++++++||+++|+||++||++|+..+|.|.++++++++.+ +.++.|+.+ .+.+..+++..+... .++
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 56 99999999999999999999999999999999999998766 889999763 234455555444222 334
Q ss_pred ccccceeeeccccCCCCc
Q 018332 105 EEDLIGLIEDYGADAYPF 122 (358)
Q Consensus 105 ~~~~~~l~~~~gi~~~P~ 122 (358)
.+....+.+.|++..+|.
T Consensus 91 ~D~~~~~~~~~~v~~~P~ 108 (126)
T cd03012 91 NDNDYATWRAYGNQYWPA 108 (126)
T ss_pred ECCchHHHHHhCCCcCCe
Confidence 444445566666666663
No 91
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.34 E-value=3.7e-12 Score=96.85 Aligned_cols=69 Identities=23% Similarity=0.369 Sum_probs=58.4
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.+|+|+|.|+++||++|+.+.|.|.+++++|+ +.+.++.|.+|. ..++++.|+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~----~~~~f~kVDVDe-----------------------v~dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS----KMASIYLVDVDK-----------------------VPVYTQYFD 65 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc----CceEEEEEeccc-----------------------cHHHHHhcC
Confidence 57999999999999999999999999999996 236666677775 478999999
Q ss_pred CCceeeEEEECCCCcEE
Q 018332 249 IKGIPALVLIGPDGKTI 265 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~ 265 (358)
|.+.||++++ .+|+-.
T Consensus 66 I~amPtfvff-kngkh~ 81 (114)
T cd02986 66 ISYIPSTIFF-FNGQHM 81 (114)
T ss_pred ceeCcEEEEE-ECCcEE
Confidence 9999999999 555543
No 92
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.34 E-value=1.3e-12 Score=100.00 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=51.4
Q ss_pred cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC
Q 018332 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD 118 (358)
Q Consensus 39 ~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 118 (358)
+.+||+|+|+|||+||++|+.++|.|+++++++ . ++.++.|++|.+... ..++++|+|.
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~---~v~~~~vd~d~~~~~-----------------~~l~~~~~V~ 70 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N---DVVFLLVNGDENDST-----------------MELCRREKII 70 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C---CCEEEEEECCCChHH-----------------HHHHHHcCCC
Confidence 346899999999999999999999999999988 2 267888887765321 2567888999
Q ss_pred CCCcc
Q 018332 119 AYPFT 123 (358)
Q Consensus 119 ~~P~~ 123 (358)
++|+.
T Consensus 71 ~~Pt~ 75 (103)
T cd02985 71 EVPHF 75 (103)
T ss_pred cCCEE
Confidence 99963
No 93
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.7e-13 Score=105.25 Aligned_cols=60 Identities=28% Similarity=0.559 Sum_probs=51.3
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
.+.+|+|+|||+||+||+.+.|.++++.+++... +.+..|+.|... +++.+|+|.+.
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~--------------------ela~~Y~I~av 116 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHP--------------------ELAEDYEISAV 116 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEcccccc--------------------chHhhcceeee
Confidence 4689999999999999999999999999999665 778777777654 67888888888
Q ss_pred Ccc
Q 018332 121 PFT 123 (358)
Q Consensus 121 P~~ 123 (358)
|+.
T Consensus 117 Ptv 119 (150)
T KOG0910|consen 117 PTV 119 (150)
T ss_pred eEE
Confidence 864
No 94
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.33 E-value=1.2e-11 Score=94.22 Aligned_cols=68 Identities=22% Similarity=0.416 Sum_probs=57.0
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
+|+ ++|.||++||++|+.+.|.+.++++.++. .++.+..|+++.. ..++++|+
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~~~~-----------------------~~~~~~~~ 68 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDD---LGINVAKVDVTQE-----------------------PGLSGRFF 68 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc---CCeEEEEEEccCC-----------------------HhHHHHcC
Confidence 455 68999999999999999999999987753 4677777777653 56889999
Q ss_pred CCceeeEEEECCCCcE
Q 018332 249 IKGIPALVLIGPDGKT 264 (358)
Q Consensus 249 v~~~P~~~lid~~G~v 264 (358)
|.++||++++ ++|++
T Consensus 69 i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 69 VTALPTIYHA-KDGVF 83 (101)
T ss_pred CcccCEEEEe-CCCCE
Confidence 9999999998 88875
No 95
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.33 E-value=1.3e-12 Score=99.62 Aligned_cols=61 Identities=16% Similarity=0.356 Sum_probs=52.1
Q ss_pred CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018332 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA 119 (358)
Q Consensus 40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~ 119 (358)
.++++++|+||++||++|+++.|.|++++++++.. +.++.|++|... .++++|+|+.
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~~--------------------~~~~~~~v~~ 72 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDDR--------------------MLCRSQGVNS 72 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCccH--------------------HHHHHcCCCc
Confidence 35699999999999999999999999999998753 778888887654 4688899999
Q ss_pred CCcc
Q 018332 120 YPFT 123 (358)
Q Consensus 120 ~P~~ 123 (358)
||+.
T Consensus 73 ~Pt~ 76 (101)
T cd03003 73 YPSL 76 (101)
T ss_pred cCEE
Confidence 9964
No 96
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.33 E-value=1.2e-11 Score=96.30 Aligned_cols=77 Identities=26% Similarity=0.485 Sum_probs=59.7
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
+++++|.||++||++|+.+.|.+.++++++++ ....+.+..++++.+. ...+++.|++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i 76 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRK-WRPVVRVAAVDCADEE---------------------NVALCRDFGV 76 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHh-cCCceEEEEEeccchh---------------------hHHHHHhCCC
Confidence 47999999999999999999999999999874 2234666666654432 4678999999
Q ss_pred CceeeEEEECCCCcEEecCc
Q 018332 250 KGIPALVLIGPDGKTISTNG 269 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~~~~g 269 (358)
+++|+++++ ++|+.....|
T Consensus 77 ~~~Pt~~lf-~~~~~~~~~~ 95 (114)
T cd02992 77 TGYPTLRYF-PPFSKEATDG 95 (114)
T ss_pred CCCCEEEEE-CCCCccCCCC
Confidence 999999999 5555544443
No 97
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.33 E-value=5.9e-12 Score=96.51 Aligned_cols=72 Identities=24% Similarity=0.421 Sum_probs=60.2
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.+++++|.||++||++|+.+.|.+.+++++++ ..+.+..|+++.. ..++++|+
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~ 70 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALK----GKVKVGSVDCQKY-----------------------ESLCQQAN 70 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCcEEEEEECCch-----------------------HHHHHHcC
Confidence 35799999999999999999999999999986 4577777777753 67899999
Q ss_pred CCceeeEEEECCCCcEEec
Q 018332 249 IKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~ 267 (358)
|+++||++++..+|+.+.+
T Consensus 71 i~~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 71 IRAYPTIRLYPGNASKYHS 89 (104)
T ss_pred CCcccEEEEEcCCCCCceE
Confidence 9999999999665465544
No 98
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.33 E-value=1.7e-11 Score=95.30 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=60.1
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.+++|+|+||++||++|+.+.|.|.++.+++. ++.++-|.++.. ..++++|+
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-----~i~f~~Vd~~~~-----------------------~~l~~~~~ 72 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-----ETKFIKVNAEKA-----------------------PFLVEKLN 72 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-----CCEEEEEEcccC-----------------------HHHHHHCC
Confidence 35799999999999999999999999999885 356777766653 67999999
Q ss_pred CCceeeEEEECCCCcEEec
Q 018332 249 IKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~ 267 (358)
|.++||++++ ++|+++.+
T Consensus 73 v~~vPt~l~f-k~G~~v~~ 90 (113)
T cd02989 73 IKVLPTVILF-KNGKTVDR 90 (113)
T ss_pred CccCCEEEEE-ECCEEEEE
Confidence 9999999999 78888866
No 99
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.32 E-value=2.4e-12 Score=98.75 Aligned_cols=59 Identities=14% Similarity=0.279 Sum_probs=50.0
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
.+++|+|.|||+||+||+.|.|.|+++++++.+. +.++.|++|... +++.+|+|.+.
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~~--------------------~la~~~~V~~i 69 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEVP--------------------DFNKMYELYDP 69 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCCH--------------------HHHHHcCCCCC
Confidence 4789999999999999999999999999998654 567777777655 57788888888
Q ss_pred Cc
Q 018332 121 PF 122 (358)
Q Consensus 121 P~ 122 (358)
|+
T Consensus 70 PT 71 (114)
T cd02954 70 PT 71 (114)
T ss_pred CE
Confidence 85
No 100
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.32 E-value=9.1e-12 Score=96.25 Aligned_cols=70 Identities=27% Similarity=0.557 Sum_probs=60.4
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.+++++|.||++||++|+.+.|.+.++++++. ..+.++.|+++.+. ...+++.|+
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~----~~~~~~~v~~~~~~---------------------~~~~~~~~~ 71 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD----GLVQVAAVDCDEDK---------------------NKPLCGKYG 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc----CCceEEEEecCccc---------------------cHHHHHHcC
Confidence 46889999999999999999999999999886 55788888888642 367899999
Q ss_pred CCceeeEEEECCCCc
Q 018332 249 IKGIPALVLIGPDGK 263 (358)
Q Consensus 249 v~~~P~~~lid~~G~ 263 (358)
|.++|+++++++++.
T Consensus 72 i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 72 VQGFPTLKVFRPPKK 86 (109)
T ss_pred CCcCCEEEEEeCCCc
Confidence 999999999977763
No 101
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.32 E-value=6.7e-12 Score=102.41 Aligned_cols=87 Identities=30% Similarity=0.528 Sum_probs=71.1
Q ss_pred cCCCCc-eecccCCCCEEEEEEeCC-CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC--ccc
Q 018332 29 LSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG--TLI 104 (358)
Q Consensus 29 ~~~~g~-v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~--~~~ 104 (358)
++.+|+ +++++++||+++|.||++ |||+|+..+|.+.++++.+++.+ ++++.|+.+.+.. ..++..+... .++
T Consensus 14 ~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~-~~~~~~~~~~~~~~~ 90 (146)
T PF08534_consen 14 LDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPP-VREFLKKYGINFPVL 90 (146)
T ss_dssp EETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHH-HHHHHHHTTTTSEEE
T ss_pred ecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHH-HHHHHHhhCCCceEE
Confidence 459999 999999999999999999 99999999999999999988887 8999999987766 5555555222 344
Q ss_pred ccccceeeeccccC
Q 018332 105 EEDLIGLIEDYGAD 118 (358)
Q Consensus 105 ~~~~~~l~~~~gi~ 118 (358)
.+....+.+.|++.
T Consensus 91 ~D~~~~~~~~~~~~ 104 (146)
T PF08534_consen 91 SDPDGALAKALGVT 104 (146)
T ss_dssp EETTSHHHHHTTCE
T ss_pred echHHHHHHHhCCc
Confidence 45556677777766
No 102
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.32 E-value=7.2e-12 Score=105.26 Aligned_cols=95 Identities=26% Similarity=0.550 Sum_probs=77.0
Q ss_pred cc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC--
Q 018332 26 EF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG-- 101 (358)
Q Consensus 26 ~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~-- 101 (358)
++ +.+.+|+ +++++++||+++|+||++||++|+...|.+.++++++.+.+ ++++.|++|.+.+.+.++......
T Consensus 43 ~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~~~~~~~~~~ 120 (173)
T PRK03147 43 NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNFVNRYGLTF 120 (173)
T ss_pred CcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHHHHHHhCCCc
Confidence 44 7889999 99999999999999999999999999999999999998765 899999999887776666655222
Q ss_pred cccccccceeeeccccCCCCc
Q 018332 102 TLIEEDLIGLIEDYGADAYPF 122 (358)
Q Consensus 102 ~~~~~~~~~l~~~~gi~~~P~ 122 (358)
.++.+....+.+.|++..+|.
T Consensus 121 ~~~~d~~~~~~~~~~v~~~P~ 141 (173)
T PRK03147 121 PVAIDKGRQVIDAYGVGPLPT 141 (173)
T ss_pred eEEECCcchHHHHcCCCCcCe
Confidence 344444556777788777774
No 103
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.32 E-value=1.7e-11 Score=95.51 Aligned_cols=72 Identities=11% Similarity=0.177 Sum_probs=59.8
Q ss_pred CcEEEEEEeccCCcc--cH--hhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018332 170 GKTIGLYFGAHWCPP--CR--SFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 245 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~--C~--~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (358)
..++|++||++||++ |+ .+.|.+.+++.++-. ..++.|+-|++|.. ..+++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~--~~~v~~~kVD~d~~-----------------------~~La~ 81 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE--DKGIGFGLVDSKKD-----------------------AKVAK 81 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh--cCCCEEEEEeCCCC-----------------------HHHHH
Confidence 369999999999988 99 778889999888721 15688888888864 68999
Q ss_pred HcCCCceeeEEEECCCCcEEec
Q 018332 246 IFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 246 ~~~v~~~P~~~lid~~G~v~~~ 267 (358)
+|+|+++||+++| ++|+++..
T Consensus 82 ~~~I~~iPTl~lf-k~G~~v~~ 102 (120)
T cd03065 82 KLGLDEEDSIYVF-KDDEVIEY 102 (120)
T ss_pred HcCCccccEEEEE-ECCEEEEe
Confidence 9999999999999 78887643
No 104
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.31 E-value=1.3e-11 Score=93.98 Aligned_cols=71 Identities=23% Similarity=0.364 Sum_probs=62.5
Q ss_pred CCcEEEEEEeccC--CcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018332 169 AGKTIGLYFGAHW--CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 246 (358)
Q Consensus 169 ~~k~vlv~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (358)
.|.+++|.||++| ||+|+.+.|.|.+++++|. +.+.++-|.+|.. ..++.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~----~~v~f~kVdid~~-----------------------~~la~~ 78 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP----GRFRAAVVGRADE-----------------------QALAAR 78 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC----CcEEEEEEECCCC-----------------------HHHHHH
Confidence 4678999999997 9999999999999999997 4566777777764 689999
Q ss_pred cCCCceeeEEEECCCCcEEec
Q 018332 247 FNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 247 ~~v~~~P~~~lid~~G~v~~~ 267 (358)
|+|+++||++++ ++|+++.+
T Consensus 79 f~V~sIPTli~f-kdGk~v~~ 98 (111)
T cd02965 79 FGVLRTPALLFF-RDGRYVGV 98 (111)
T ss_pred cCCCcCCEEEEE-ECCEEEEE
Confidence 999999999999 88998877
No 105
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.31 E-value=2.2e-11 Score=93.28 Aligned_cols=70 Identities=21% Similarity=0.360 Sum_probs=56.1
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
++++++|.||++||++|+.+.|.|.+++++++. .+.++.+..++++.. ..++++|+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~~~~~vd~~~~-----------------------~~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKS-SGSPVRVGKLDATAY-----------------------SSIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHh-cCCcEEEEEEECccC-----------------------HhHHhhcC
Confidence 457999999999999999999999999999864 123456666665542 57889999
Q ss_pred CCceeeEEEECCCCc
Q 018332 249 IKGIPALVLIGPDGK 263 (358)
Q Consensus 249 v~~~P~~~lid~~G~ 263 (358)
|.++|+++++ .+|.
T Consensus 70 I~~~Pt~~l~-~~~~ 83 (104)
T cd03000 70 VRGYPTIKLL-KGDL 83 (104)
T ss_pred CccccEEEEE-cCCC
Confidence 9999999999 4443
No 106
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.30 E-value=2.2e-11 Score=92.11 Aligned_cols=71 Identities=23% Similarity=0.467 Sum_probs=61.2
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.+++++++||++||+.|+.+.|.+.++.+++. .++.++.++.|.. .++.+.|+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~----~~v~~~~id~d~~-----------------------~~l~~~~~ 64 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD----GAVHFVEIDIDED-----------------------QEIAEAAG 64 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC----CceEEEEEECCCC-----------------------HHHHHHCC
Confidence 46899999999999999999999999998886 4577777777654 57889999
Q ss_pred CCceeeEEEECCCCcEEec
Q 018332 249 IKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~ 267 (358)
+.++|+++++ ++|+++.+
T Consensus 65 v~~vPt~~i~-~~g~~v~~ 82 (97)
T cd02949 65 IMGTPTVQFF-KDKELVKE 82 (97)
T ss_pred CeeccEEEEE-ECCeEEEE
Confidence 9999999999 58988866
No 107
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.30 E-value=3e-11 Score=92.13 Aligned_cols=70 Identities=30% Similarity=0.782 Sum_probs=60.7
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
+++++|+||++||++|+.+.|.|.++.+++. .++.++.|..+.. ..++++|+|
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~v 69 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYK----DNVKFAKVDCDEN-----------------------KELCKKYGV 69 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTT----TTSEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred CCCEEEEEeCCCCCccccccceecccccccc----cccccchhhhhcc-----------------------chhhhccCC
Confidence 6899999999999999999999999999987 3677777777753 689999999
Q ss_pred CceeeEEEECCCCcEEec
Q 018332 250 KGIPALVLIGPDGKTIST 267 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~~~ 267 (358)
.++|+++++ .+|+.+.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (103)
T PF00085_consen 70 KSVPTIIFF-KNGKEVKR 86 (103)
T ss_dssp SSSSEEEEE-ETTEEEEE
T ss_pred CCCCEEEEE-ECCcEEEE
Confidence 999999999 66666654
No 108
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.30 E-value=9.6e-12 Score=96.19 Aligned_cols=71 Identities=15% Similarity=0.447 Sum_probs=59.7
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH-Hc
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IF 247 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 247 (358)
++|+++|.||++||++|+.+.|.+.++++++++ .++.++.|.+|.+. ..++. .|
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~---~~~~~~~vd~d~~~----------------------~~~~~~~~ 74 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG---SNVKVAKFNADGEQ----------------------REFAKEEL 74 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc---CCeEEEEEECCccc----------------------hhhHHhhc
Confidence 478999999999999999999999999999974 56888888888631 45555 59
Q ss_pred CCCceeeEEEECCCCcE
Q 018332 248 NIKGIPALVLIGPDGKT 264 (358)
Q Consensus 248 ~v~~~P~~~lid~~G~v 264 (358)
+++++||+++++++|+.
T Consensus 75 ~v~~~Pti~~f~~~~~~ 91 (109)
T cd02993 75 QLKSFPTILFFPKNSRQ 91 (109)
T ss_pred CCCcCCEEEEEcCCCCC
Confidence 99999999999777653
No 109
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.29 E-value=1.1e-11 Score=94.51 Aligned_cols=71 Identities=23% Similarity=0.566 Sum_probs=58.6
Q ss_pred EEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCc
Q 018332 172 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG 251 (358)
Q Consensus 172 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 251 (358)
.++|.||++||++|+.+.|.+.+++++++. ...++.++.|.++.. ..++++|+|.+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~vd~~~~-----------------------~~~~~~~~v~~ 73 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNN-ENPSVKIAKVDCTQH-----------------------RELCSEFQVRG 73 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhc-cCCcEEEEEEECCCC-----------------------hhhHhhcCCCc
Confidence 599999999999999999999999999873 123677777766643 57889999999
Q ss_pred eeeEEEECCCCcEEec
Q 018332 252 IPALVLIGPDGKTIST 267 (358)
Q Consensus 252 ~P~~~lid~~G~v~~~ 267 (358)
+|+++++ ++|+.+.+
T Consensus 74 ~Pt~~~~-~~g~~~~~ 88 (102)
T cd03005 74 YPTLLLF-KDGEKVDK 88 (102)
T ss_pred CCEEEEE-eCCCeeeE
Confidence 9999999 77776544
No 110
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.28 E-value=5.5e-12 Score=97.81 Aligned_cols=63 Identities=19% Similarity=0.417 Sum_probs=52.2
Q ss_pred cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC
Q 018332 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD 118 (358)
Q Consensus 39 ~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 118 (358)
...|++++|+||||||++|+.+.|.|+++++++...+ +.++.|++|.+. .++.+++|.
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~~--------------------~l~~~~~V~ 78 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHER--------------------RLARKLGAH 78 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEeccccH--------------------HHHHHcCCc
Confidence 3468999999999999999999999999999997543 777777777654 457788888
Q ss_pred CCCcc
Q 018332 119 AYPFT 123 (358)
Q Consensus 119 ~~P~~ 123 (358)
++|+.
T Consensus 79 ~~Pt~ 83 (111)
T cd02963 79 SVPAI 83 (111)
T ss_pred cCCEE
Confidence 88864
No 111
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.28 E-value=4.2e-11 Score=95.49 Aligned_cols=71 Identities=15% Similarity=0.323 Sum_probs=59.5
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.+++|+|+|||+||+||+.+.|.|.+++++++ +.+.|+-|++|.. .+++..|+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~----~~~~~~kVDVDe~-----------------------~dla~~y~ 74 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIK----NFAVIYLVDITEV-----------------------PDFNTMYE 74 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcC----CceEEEEEECCCC-----------------------HHHHHHcC
Confidence 46899999999999999999999999999986 4467777888864 68999999
Q ss_pred CCceeeEE-EECCCCc-EEec
Q 018332 249 IKGIPALV-LIGPDGK-TIST 267 (358)
Q Consensus 249 v~~~P~~~-lid~~G~-v~~~ 267 (358)
|++.|+++ ++ ++|+ .+.+
T Consensus 75 I~~~~t~~~ff-k~g~~~vd~ 94 (142)
T PLN00410 75 LYDPCTVMFFF-RNKHIMIDL 94 (142)
T ss_pred ccCCCcEEEEE-ECCeEEEEE
Confidence 99887776 66 7887 4544
No 112
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.27 E-value=2.6e-11 Score=93.57 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=58.6
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhccc--CCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTA--NHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 246 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (358)
.+++++|.||++||++|+.+.|.+.++++++++.. ...+.++.|.+|.. ..++++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-----------------------~~l~~~ 73 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-----------------------SDIADR 73 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----------------------HHHHHh
Confidence 35799999999999999999999999999886311 12466666766653 679999
Q ss_pred cCCCceeeEEEECCCCcE
Q 018332 247 FNIKGIPALVLIGPDGKT 264 (358)
Q Consensus 247 ~~v~~~P~~~lid~~G~v 264 (358)
|+|+++|+++++ ++|++
T Consensus 74 ~~v~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 74 YRINKYPTLKLF-RNGMM 90 (108)
T ss_pred CCCCcCCEEEEE-eCCcC
Confidence 999999999999 78874
No 113
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.27 E-value=1.6e-11 Score=104.23 Aligned_cols=99 Identities=23% Similarity=0.289 Sum_probs=71.1
Q ss_pred eccccc-Cccc-ccCCC--Cc-eecccC-CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018332 18 TVLASE-GVEF-LLSRQ--GK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG 91 (358)
Q Consensus 18 ~~l~~~-~~~~-l~~~~--g~-v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~ 91 (358)
+...+. .++| +.+.+ |+ ++++.+ +||+++|.|||+||++|+..+|.+.++++ .+ ++++.|+.+.+.+.
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~~~~~~~~ 111 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMNYKDDRQK 111 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEECCCCHHH
Confidence 334433 3455 66666 46 777665 79999999999999999999999988754 34 88999998877766
Q ss_pred HHHHHhhCCC---cccccccceeeeccccCCCCc
Q 018332 92 FEEHFKSSDG---TLIEEDLIGLIEDYGADAYPF 122 (358)
Q Consensus 92 ~~~~~~~~~~---~~~~~~~~~l~~~~gi~~~P~ 122 (358)
..++..+... .++.+....+...||+.+.|+
T Consensus 112 ~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~ 145 (185)
T PRK15412 112 AISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE 145 (185)
T ss_pred HHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCe
Confidence 6666655322 234455556777888888874
No 114
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.27 E-value=2.8e-11 Score=92.17 Aligned_cols=70 Identities=23% Similarity=0.467 Sum_probs=58.9
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
++++++|.||++||++|+.+.+.+.++++.++. ..++.++.+.++. ...+.++|+
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~-----------------------~~~~~~~~~ 66 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG--DPDIVLAKVDATA-----------------------EKDLASRFG 66 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc--CCceEEEEEEccc-----------------------hHHHHHhCC
Confidence 678999999999999999999999999998873 1256666666654 368889999
Q ss_pred CCceeeEEEECCCCc
Q 018332 249 IKGIPALVLIGPDGK 263 (358)
Q Consensus 249 v~~~P~~~lid~~G~ 263 (358)
+.++|+++++++++.
T Consensus 67 i~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 67 VSGFPTIKFFPKGKK 81 (102)
T ss_pred CCcCCEEEEecCCCc
Confidence 999999999977776
No 115
>PHA02278 thioredoxin-like protein
Probab=99.26 E-value=5.7e-12 Score=95.82 Aligned_cols=63 Identities=8% Similarity=0.254 Sum_probs=48.3
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
++++|+|+|||+||+||+.+.|.|+++++++... ..++.|++|.++.. ...++++|+|.+.
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~d----------------~~~l~~~~~I~~i 73 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDVD----------------REKAVKLFDIMST 73 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCccccc----------------cHHHHHHCCCccc
Confidence 5899999999999999999999999998875433 56888888865200 0135677777777
Q ss_pred Cc
Q 018332 121 PF 122 (358)
Q Consensus 121 P~ 122 (358)
|+
T Consensus 74 PT 75 (103)
T PHA02278 74 PV 75 (103)
T ss_pred cE
Confidence 75
No 116
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.26 E-value=1.4e-11 Score=105.48 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=55.9
Q ss_pred ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
.+| +.+.+|+ +++++++||+|+|.|||+||++|+..+|.|.++++++++.| ++|+.|+++
T Consensus 20 pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~ 81 (199)
T PTZ00056 20 YDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTS 81 (199)
T ss_pred CceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecch
Confidence 455 7889999 99999999999999999999999999999999999999887 999999985
No 117
>PLN02412 probable glutathione peroxidase
Probab=99.26 E-value=1.4e-11 Score=102.64 Aligned_cols=60 Identities=22% Similarity=0.408 Sum_probs=56.1
Q ss_pred ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
.+| +.+.+|+ +++++++||+++|.||++||++|+..+|.|.++++++++.| ++|+.|++|
T Consensus 10 pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~ 71 (167)
T PLN02412 10 YDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCN 71 (167)
T ss_pred CceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEeccc
Confidence 455 7889999 99999999999999999999999999999999999999887 999999986
No 118
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.26 E-value=1.8e-11 Score=96.88 Aligned_cols=93 Identities=30% Similarity=0.566 Sum_probs=75.1
Q ss_pred cCccc-ccCCCCc-eecccCCCCEEEEEEeCC-CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhC
Q 018332 23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSS 99 (358)
Q Consensus 23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~ 99 (358)
+-++| +++.+|+ +++++++||+++|.||+. ||++|+..++.|.++++++++.+ ++++.|+.|..+ ...++....
T Consensus 4 ~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~~-~~~~~~~~~ 80 (124)
T PF00578_consen 4 KAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDPE-EIKQFLEEY 80 (124)
T ss_dssp BGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSHH-HHHHHHHHH
T ss_pred CCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeeccccccc-chhhhhhhh
Confidence 33566 8899999 999999999999999999 99999999999999999999877 999999997544 445554442
Q ss_pred --CCcccccccceeeeccccC
Q 018332 100 --DGTLIEEDLIGLIEDYGAD 118 (358)
Q Consensus 100 --~~~~~~~~~~~l~~~~gi~ 118 (358)
...++.+....+++.|++.
T Consensus 81 ~~~~~~~~D~~~~~~~~~~~~ 101 (124)
T PF00578_consen 81 GLPFPVLSDPDGELAKAFGIE 101 (124)
T ss_dssp TCSSEEEEETTSHHHHHTTCE
T ss_pred ccccccccCcchHHHHHcCCc
Confidence 3355666666777777775
No 119
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.26 E-value=7.9e-11 Score=98.78 Aligned_cols=120 Identities=20% Similarity=0.387 Sum_probs=94.4
Q ss_pred hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC---HHHH
Q 018332 147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD---HKEF 221 (358)
Q Consensus 147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~---~~~~ 221 (358)
.....|+|.+ +.+|+.+++++++||+++|+|..+.||. |...+..|.++.+++.. .+.++++++|++|+. ++..
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~-~~~~v~~v~ISvDP~~DTp~~L 106 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGE-EGKDVQFVFISVDPERDTPEVL 106 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHH-TTTTEEEEEEESSTTTC-HHHH
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhh-ccCceEEEEEEeCCCCCCHHHH
Confidence 3456788999 9999999999999999999999999987 99999999999999986 357899999999975 4556
Q ss_pred HHhhhcC--CccccccCchhHHHHHHHcCCCc----------------eeeEEEECCCCcEEec
Q 018332 222 DLNHSIM--PWLAIPYEDRARQDLCRIFNIKG----------------IPALVLIGPDGKTIST 267 (358)
Q Consensus 222 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~~----------------~P~~~lid~~G~v~~~ 267 (358)
.++.+.+ .|..+....+....+.+.|++.. ...++|||++|+++..
T Consensus 107 ~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 107 KKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 6666543 45555566666778888888642 2368999999999865
No 120
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.24 E-value=3.8e-11 Score=92.98 Aligned_cols=93 Identities=29% Similarity=0.503 Sum_probs=73.3
Q ss_pred ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC-hhHHHHHHhhCCC--cc
Q 018332 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKSSDG--TL 103 (358)
Q Consensus 28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~--~~ 103 (358)
+.+.+|+ +++++++||+++|.||++||++|+...+.+.++.+++.+.+ +.++.|++|.+ .+...++...... .+
T Consensus 4 ~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~~~~~~ 81 (116)
T cd02966 4 LPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVKAFLKKYGITFPV 81 (116)
T ss_pred ccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCC--eEEEEEECCCCCHHHHHHHHHHcCCCcce
Confidence 5678888 99999999999999999999999999999999999987444 89999999976 6777777665332 33
Q ss_pred cccccceeeeccccCCCCc
Q 018332 104 IEEDLIGLIEDYGADAYPF 122 (358)
Q Consensus 104 ~~~~~~~l~~~~gi~~~P~ 122 (358)
+.+....+.+.|++..+|.
T Consensus 82 ~~~~~~~~~~~~~~~~~P~ 100 (116)
T cd02966 82 LLDPDGELAKAYGVRGLPT 100 (116)
T ss_pred EEcCcchHHHhcCcCccce
Confidence 3344456677777766663
No 121
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.23 E-value=9.4e-11 Score=88.95 Aligned_cols=70 Identities=29% Similarity=0.591 Sum_probs=60.3
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
+++++|+||++||++|+.+.+.|.++.+++. .++.++.+..+.. ..+.++|++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE----GKVKFVKLNVDEN-----------------------PDIAAKYGI 66 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc----CCeEEEEEECCCC-----------------------HHHHHHcCC
Confidence 4799999999999999999999999998886 5678888877754 578899999
Q ss_pred CceeeEEEECCCCcEEec
Q 018332 250 KGIPALVLIGPDGKTIST 267 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~~~ 267 (358)
.++|+++++ ++|+++.+
T Consensus 67 ~~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 67 RSIPTLLLF-KNGKEVDR 83 (101)
T ss_pred CcCCEEEEE-eCCcEeee
Confidence 999999999 78877655
No 122
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.23 E-value=5.5e-11 Score=90.92 Aligned_cols=75 Identities=23% Similarity=0.453 Sum_probs=59.4
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
++++++|+||++||++|+.+.|.++++.+.++. ...+.++.+.++.+. ...++++|+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~~---------------------~~~~~~~~~ 72 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE--DGKGVLAAVDCTKPE---------------------HDALKEEYN 72 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh--CCceEEEEEECCCCc---------------------cHHHHHhCC
Confidence 457999999999999999999999999998863 234555556665421 367889999
Q ss_pred CCceeeEEEECCCCcEEec
Q 018332 249 IKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~ 267 (358)
++++|+++++ ++|+++.+
T Consensus 73 i~~~Pt~~~~-~~g~~~~~ 90 (104)
T cd02997 73 VKGFPTFKYF-ENGKFVEK 90 (104)
T ss_pred CccccEEEEE-eCCCeeEE
Confidence 9999999888 67886654
No 123
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.23 E-value=2.6e-11 Score=99.62 Aligned_cols=56 Identities=27% Similarity=0.388 Sum_probs=52.8
Q ss_pred ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
+.+.+|+ +++++++||+|+|.|||+||+ |+..+|.|.++++++++.+ ++++.|+++
T Consensus 7 l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~ 63 (152)
T cd00340 7 VKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCN 63 (152)
T ss_pred EECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccC
Confidence 7789999 999999999999999999999 9999999999999998777 999999875
No 124
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.22 E-value=5.3e-11 Score=89.86 Aligned_cols=70 Identities=20% Similarity=0.453 Sum_probs=58.5
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
+++++|.||++||++|+.+.+.|.++.+++. .++.++.+..+. ...++++|++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~----~~i~~~~vd~~~-----------------------~~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF----PSVLFLSIEAEE-----------------------LPEISEKFEI 66 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC----CceEEEEEcccc-----------------------CHHHHHhcCC
Confidence 6899999999999999999999999998863 455565554443 3678899999
Q ss_pred CceeeEEEECCCCcEEec
Q 018332 250 KGIPALVLIGPDGKTIST 267 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~~~ 267 (358)
.++|+++++ .+|+++.+
T Consensus 67 ~~~Pt~~~~-~~g~~~~~ 83 (97)
T cd02984 67 TAVPTFVFF-RNGTIVDR 83 (97)
T ss_pred ccccEEEEE-ECCEEEEE
Confidence 999999999 68988876
No 125
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.22 E-value=1.7e-11 Score=93.88 Aligned_cols=60 Identities=25% Similarity=0.482 Sum_probs=50.6
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
.+++++|.|||+||++|+.+.|.|+++++++... +.++.|+++... .++++|+|.++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~--------------------~~~~~~~i~~~ 74 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKYE--------------------SLCQQANIRAY 74 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCchH--------------------HHHHHcCCCcc
Confidence 4679999999999999999999999999998543 677777777544 57888999999
Q ss_pred Ccc
Q 018332 121 PFT 123 (358)
Q Consensus 121 P~~ 123 (358)
|+.
T Consensus 75 Pt~ 77 (104)
T cd03004 75 PTI 77 (104)
T ss_pred cEE
Confidence 964
No 126
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.22 E-value=1.8e-11 Score=92.31 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=50.4
Q ss_pred CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018332 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA 119 (358)
Q Consensus 40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~ 119 (358)
-+|++++|+||++||++|+.+.|.+.++++.+... +.++.|+++... .++++|++.+
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~--------------------~l~~~~~i~~ 66 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQP--------------------QIAQQFGVQA 66 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCCH--------------------HHHHHcCCCC
Confidence 35899999999999999999999999999988653 667777776554 5688888888
Q ss_pred CCcc
Q 018332 120 YPFT 123 (358)
Q Consensus 120 ~P~~ 123 (358)
+|+.
T Consensus 67 ~Pt~ 70 (96)
T cd02956 67 LPTV 70 (96)
T ss_pred CCEE
Confidence 8864
No 127
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.22 E-value=2.3e-11 Score=93.90 Aligned_cols=63 Identities=16% Similarity=0.375 Sum_probs=50.9
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCC---ceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT---ELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA 117 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~---~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 117 (358)
++++++|.||||||++|+.+.|.|+++++.+++..+ .+.++.+++|.+. .++++|+|
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~--------------------~l~~~~~v 76 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES--------------------DIADRYRI 76 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--------------------HHHHhCCC
Confidence 468999999999999999999999999998865321 2666666666544 57899999
Q ss_pred CCCCcc
Q 018332 118 DAYPFT 123 (358)
Q Consensus 118 ~~~P~~ 123 (358)
+++|+.
T Consensus 77 ~~~Ptl 82 (108)
T cd02996 77 NKYPTL 82 (108)
T ss_pred CcCCEE
Confidence 999964
No 128
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.22 E-value=1.9e-11 Score=93.27 Aligned_cols=59 Identities=17% Similarity=0.318 Sum_probs=48.3
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
.|++|+|+|||+||++|+.++|.|.+++++++... +.++.++.| +. +++++|+|+++
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~--~~~~~vd~d-~~--------------------~~~~~~~v~~~ 72 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDL--LHFATAEAD-TI--------------------DTLKRYRGKCE 72 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCc--EEEEEEeCC-CH--------------------HHHHHcCCCcC
Confidence 58999999999999999999999999999886433 667777777 33 35677888888
Q ss_pred Cc
Q 018332 121 PF 122 (358)
Q Consensus 121 P~ 122 (358)
|+
T Consensus 73 Pt 74 (102)
T cd02948 73 PT 74 (102)
T ss_pred cE
Confidence 85
No 129
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.22 E-value=4.8e-11 Score=99.90 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=56.4
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
+++|+|.||++||++|+.+.|.|.+++.+|.. +. ++.+|.+. . .++..|+|
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-----vk--F~kVd~d~---------------------~-~l~~~f~v 133 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-----VK--FCKIRASA---------------------T-GASDEFDT 133 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-----eE--EEEEeccc---------------------h-hhHHhCCC
Confidence 35999999999999999999999999999853 44 44444432 2 68889999
Q ss_pred CceeeEEEECCCCcEEec
Q 018332 250 KGIPALVLIGPDGKTIST 267 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~~~ 267 (358)
.++||++++ ++|+++.+
T Consensus 134 ~~vPTllly-k~G~~v~~ 150 (175)
T cd02987 134 DALPALLVY-KGGELIGN 150 (175)
T ss_pred CCCCEEEEE-ECCEEEEE
Confidence 999999999 88988876
No 130
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.21 E-value=1.3e-11 Score=94.67 Aligned_cols=64 Identities=20% Similarity=0.443 Sum_probs=51.5
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
++++++|.||++||++|+.++|.|.+++++++..+.++.+..++++... .++++|+|.++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~--------------------~~~~~~~I~~~ 73 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS--------------------SIASEFGVRGY 73 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH--------------------hHHhhcCCccc
Confidence 4679999999999999999999999999999765544666666666433 46788899999
Q ss_pred Ccch
Q 018332 121 PFTR 124 (358)
Q Consensus 121 P~~~ 124 (358)
|+..
T Consensus 74 Pt~~ 77 (104)
T cd03000 74 PTIK 77 (104)
T ss_pred cEEE
Confidence 9643
No 131
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.21 E-value=7.3e-11 Score=102.13 Aligned_cols=70 Identities=29% Similarity=0.470 Sum_probs=58.2
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
+++++|+||++||++|+.+.|.+++++++++ ..+.+..|.++. ...++++|+|
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~----~~v~~~~VD~~~-----------------------~~~l~~~~~I 104 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALK----GQVNVADLDATR-----------------------ALNLAKRFAI 104 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcC----CCeEEEEecCcc-----------------------cHHHHHHcCC
Confidence 5799999999999999999999999999987 345555555443 3678999999
Q ss_pred CceeeEEEECCCCcEEec
Q 018332 250 KGIPALVLIGPDGKTIST 267 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~~~ 267 (358)
+++||+++++ +|+++..
T Consensus 105 ~~~PTl~~f~-~G~~v~~ 121 (224)
T PTZ00443 105 KGYPTLLLFD-KGKMYQY 121 (224)
T ss_pred CcCCEEEEEE-CCEEEEe
Confidence 9999999995 7877654
No 132
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.21 E-value=1.9e-11 Score=99.01 Aligned_cols=63 Identities=22% Similarity=0.559 Sum_probs=50.8
Q ss_pred CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018332 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA 119 (358)
Q Consensus 40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~ 119 (358)
.+||+++|+|||+||++|+.++|.|.++++++... +.++.|++|.+.. ..++++|+|.+
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~------------------~~~~~~~~V~~ 76 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW------------------LPEIDRYRVDG 76 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc------------------HHHHHHcCCCC
Confidence 46899999999999999999999999999988654 7789998886532 13456777777
Q ss_pred CCcc
Q 018332 120 YPFT 123 (358)
Q Consensus 120 ~P~~ 123 (358)
+|+.
T Consensus 77 iPt~ 80 (142)
T cd02950 77 IPHF 80 (142)
T ss_pred CCEE
Confidence 7753
No 133
>PTZ00051 thioredoxin; Provisional
Probab=99.21 E-value=4.2e-11 Score=90.62 Aligned_cols=70 Identities=23% Similarity=0.445 Sum_probs=58.7
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
.+++++|+||++||++|+.+.|.|.++++++. ++.++.|+.+. ...++++|+
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-----~~~~~~vd~~~-----------------------~~~~~~~~~ 68 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-----KMVFVKVDVDE-----------------------LSEVAEKEN 68 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-----CcEEEEEECcc-----------------------hHHHHHHCC
Confidence 36899999999999999999999999988764 35566665553 367899999
Q ss_pred CCceeeEEEECCCCcEEec
Q 018332 249 IKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~ 267 (358)
+.++|+++++ ++|+++.+
T Consensus 69 v~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 69 ITSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred CceeeEEEEE-eCCeEEEE
Confidence 9999999888 89998876
No 134
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.21 E-value=3.5e-11 Score=95.07 Aligned_cols=88 Identities=19% Similarity=0.402 Sum_probs=68.6
Q ss_pred ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC-hhHHHHHHhhCCC--cc
Q 018332 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKSSDG--TL 103 (358)
Q Consensus 28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~--~~ 103 (358)
+++.+|+ +++++++||+++|.||++||++|+.++|.+.+++++ ++++.|+.|.+ .+...++..+... .+
T Consensus 5 l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (123)
T cd03011 5 ATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKGYGFPV 77 (123)
T ss_pred eecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcCCCccE
Confidence 7788999 999999999999999999999999999999998875 45777887753 5556666555222 33
Q ss_pred cccccceeeeccccCCCCc
Q 018332 104 IEEDLIGLIEDYGADAYPF 122 (358)
Q Consensus 104 ~~~~~~~l~~~~gi~~~P~ 122 (358)
+.+....+++.|++.+.|+
T Consensus 78 ~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 78 INDPDGVISARWGVSVTPA 96 (123)
T ss_pred EECCCcHHHHhCCCCcccE
Confidence 4444556888888888885
No 135
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.20 E-value=4.6e-11 Score=98.29 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=53.3
Q ss_pred ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEe
Q 018332 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (358)
Q Consensus 28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~ 85 (358)
+.+.+|+ +++++++||+|+|.|||+||++|+..+|.+.++++++++.| ++++.|++
T Consensus 7 l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~ 63 (153)
T TIGR02540 7 VKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPC 63 (153)
T ss_pred eECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEec
Confidence 7789999 99999999999999999999999999999999999999887 99999986
No 136
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.19 E-value=2.4e-11 Score=93.89 Aligned_cols=62 Identities=27% Similarity=0.521 Sum_probs=52.5
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
.|++++|.||++||++|+.+.|.|.++++.+... +.++.++++.++. ..++++|+|.++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~~------------------~~~~~~~~i~~~ 75 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDKN------------------KPLCGKYGVQGF 75 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCcccc------------------HHHHHHcCCCcC
Confidence 4789999999999999999999999999998753 7788888886432 357889999999
Q ss_pred Ccc
Q 018332 121 PFT 123 (358)
Q Consensus 121 P~~ 123 (358)
|+.
T Consensus 76 Pt~ 78 (109)
T cd03002 76 PTL 78 (109)
T ss_pred CEE
Confidence 964
No 137
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.18 E-value=3.8e-11 Score=92.83 Aligned_cols=63 Identities=14% Similarity=0.364 Sum_probs=51.1
Q ss_pred CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeee-ccccC
Q 018332 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIE-DYGAD 118 (358)
Q Consensus 40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~gi~ 118 (358)
.+||+++|.||++||+||+++.|.|.++++.+++.+ +.++.|++|.+.. .++. .|+++
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~~~-------------------~~~~~~~~v~ 77 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGEQR-------------------EFAKEELQLK 77 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCccch-------------------hhHHhhcCCC
Confidence 458999999999999999999999999999998544 7888888876322 3454 48898
Q ss_pred CCCcc
Q 018332 119 AYPFT 123 (358)
Q Consensus 119 ~~P~~ 123 (358)
.+|+.
T Consensus 78 ~~Pti 82 (109)
T cd02993 78 SFPTI 82 (109)
T ss_pred cCCEE
Confidence 99964
No 138
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.18 E-value=6.3e-11 Score=92.00 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=62.5
Q ss_pred CCcEEEEEEec-------cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHH
Q 018332 169 AGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ 241 (358)
Q Consensus 169 ~~k~vlv~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (358)
+|++|+|+||| +||++|+.+.|.|.++.++++ .++.++.|.+|... ...+...
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~----~~v~fv~Vdvd~~~----------------~w~d~~~ 79 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP----EDCVFIYCDVGDRP----------------YWRDPNN 79 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC----CCCEEEEEEcCCcc----------------cccCcch
Confidence 57899999999 999999999999999999986 45788888887532 0111246
Q ss_pred HHHHHcCCC-ceeeEEEECCCCcEEec
Q 018332 242 DLCRIFNIK-GIPALVLIGPDGKTIST 267 (358)
Q Consensus 242 ~l~~~~~v~-~~P~~~lid~~G~v~~~ 267 (358)
.+...|+|. ++||+++++..++++..
T Consensus 80 ~~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 80 PFRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred hhHhccCcccCCCEEEEEcCCceecch
Confidence 888999998 99999999655555543
No 139
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.18 E-value=4.7e-11 Score=92.99 Aligned_cols=64 Identities=28% Similarity=0.584 Sum_probs=51.9
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP 121 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P 121 (358)
+++|+|.||++||++|+.++|.|+++++.+++....+.++.++++.+.. ..++++|+++++|
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~------------------~~~~~~~~i~~~P 80 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN------------------VALCRDFGVTGYP 80 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh------------------HHHHHhCCCCCCC
Confidence 4899999999999999999999999999997644346677777654432 2578899999999
Q ss_pred cc
Q 018332 122 FT 123 (358)
Q Consensus 122 ~~ 123 (358)
+.
T Consensus 81 t~ 82 (114)
T cd02992 81 TL 82 (114)
T ss_pred EE
Confidence 64
No 140
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.17 E-value=6.1e-10 Score=87.43 Aligned_cols=85 Identities=21% Similarity=0.191 Sum_probs=56.7
Q ss_pred cccCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHH
Q 018332 166 SELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 242 (358)
Q Consensus 166 ~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (358)
..-.+|+|+|+|+++||++|+.+.... .++.+.+. .++.+|.+..+...+ ..+.+ ...
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~----~~fv~VkvD~~~~~~-~~~~~--------------~~~ 71 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN----ENFVPIKVDREERPD-VDKIY--------------MNA 71 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh----CCEEEEEEeCCcCcH-HHHHH--------------HHH
Confidence 334689999999999999999987632 24444443 455555555544321 11110 122
Q ss_pred HHHHcCCCceeeEEEECCCCcEEecCc
Q 018332 243 LCRIFNIKGIPALVLIGPDGKTISTNG 269 (358)
Q Consensus 243 l~~~~~v~~~P~~~lid~~G~v~~~~g 269 (358)
....|++.++|+++++|++|++++..+
T Consensus 72 ~~~~~~~~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 72 AQAMTGQGGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred HHHhcCCCCCCEEEEECCCCCEEeeee
Confidence 333679999999999999999998753
No 141
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.5e-11 Score=92.37 Aligned_cols=64 Identities=22% Similarity=0.520 Sum_probs=51.4
Q ss_pred ecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecc
Q 018332 36 PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDY 115 (358)
Q Consensus 36 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 115 (358)
+.....+|+++|+|||+|||||+.+.|.|.+++.++.+ +.++.+++|. . .++++.+
T Consensus 15 ~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde--~------------------~~~~~~~ 70 (106)
T KOG0907|consen 15 SAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE--L------------------EEVAKEF 70 (106)
T ss_pred HHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc--C------------------HhHHHhc
Confidence 33344579999999999999999999999999998865 4566677775 2 3678899
Q ss_pred ccCCCCcc
Q 018332 116 GADAYPFT 123 (358)
Q Consensus 116 gi~~~P~~ 123 (358)
++.+.|+.
T Consensus 71 ~V~~~PTf 78 (106)
T KOG0907|consen 71 NVKAMPTF 78 (106)
T ss_pred CceEeeEE
Confidence 99999963
No 142
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.16 E-value=1e-10 Score=98.16 Aligned_cols=95 Identities=21% Similarity=0.336 Sum_probs=68.0
Q ss_pred ccCccc-ccCCCCc-eec--ccC-CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHH
Q 018332 22 SEGVEF-LLSRQGK-VPL--SSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF 96 (358)
Q Consensus 22 ~~~~~~-l~~~~g~-v~l--~~~-~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~ 96 (358)
...++| +.+.+|. +++ +.+ +||+++|+||++||++|+.++|.+.++++ .+ ++++.|+.+.+.+...++.
T Consensus 38 ~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~--~~vi~V~~~~~~~~~~~~~ 111 (173)
T TIGR00385 38 KPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DG--LPIVGVDYKDQSQNALKFL 111 (173)
T ss_pred CCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cC--CEEEEEECCCChHHHHHHH
Confidence 334566 7778886 444 454 69999999999999999999999987764 23 8899999876665555555
Q ss_pred hhCCC---cccccccceeeeccccCCCCc
Q 018332 97 KSSDG---TLIEEDLIGLIEDYGADAYPF 122 (358)
Q Consensus 97 ~~~~~---~~~~~~~~~l~~~~gi~~~P~ 122 (358)
..... .++.+...++.+.|++.++|+
T Consensus 112 ~~~~~~f~~v~~D~~~~~~~~~~v~~~P~ 140 (173)
T TIGR00385 112 KELGNPYQAILIDPNGKLGLDLGVYGAPE 140 (173)
T ss_pred HHcCCCCceEEECCCCchHHhcCCeeCCe
Confidence 44222 233455566777888877774
No 143
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.15 E-value=3.4e-10 Score=86.34 Aligned_cols=65 Identities=23% Similarity=0.492 Sum_probs=55.6
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
+++++|.||++||++|+.+.|.+.+++++++ ..+.++.+..+. ...++++|+|
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~----~~~~~~~id~~~-----------------------~~~~~~~~~i 70 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK----GIVKVGAVDADV-----------------------HQSLAQQYGV 70 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCceEEEEECcc-----------------------hHHHHHHCCC
Confidence 4679999999999999999999999999886 457777777664 3678899999
Q ss_pred CceeeEEEECCC
Q 018332 250 KGIPALVLIGPD 261 (358)
Q Consensus 250 ~~~P~~~lid~~ 261 (358)
+++|++++++++
T Consensus 71 ~~~P~~~~~~~~ 82 (103)
T cd03001 71 RGFPTIKVFGAG 82 (103)
T ss_pred CccCEEEEECCC
Confidence 999999999544
No 144
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.15 E-value=1.1e-10 Score=101.82 Aligned_cols=62 Identities=26% Similarity=0.439 Sum_probs=57.1
Q ss_pred cCccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
...+| +.+.+|+ +++++++||+|+|.||++||++|+..+|.|.++++++++.| ++|+.|+++
T Consensus 78 ~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d 141 (236)
T PLN02399 78 SVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCN 141 (236)
T ss_pred CCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecc
Confidence 33466 8899999 99999999999999999999999999999999999999887 999999985
No 145
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.15 E-value=1.5e-10 Score=98.50 Aligned_cols=70 Identities=21% Similarity=0.354 Sum_probs=55.1
Q ss_pred cCccc-ccCCCCc-eecc--cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018332 23 EGVEF-LLSRQGK-VPLS--SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS 98 (358)
Q Consensus 23 ~~~~~-l~~~~g~-v~l~--~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~ 98 (358)
+.++| +.+.+|+ ++++ ..+||+++|+||++||++|+..+|.+.+++++. + +++++|+.+ +.+...++..+
T Consensus 51 ~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~--~~vv~Is~~-~~~~~~~~~~~ 124 (189)
T TIGR02661 51 AAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---E--TDVVMISDG-TPAEHRRFLKD 124 (189)
T ss_pred cCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---C--CcEEEEeCC-CHHHHHHHHHh
Confidence 44566 8899999 9995 568999999999999999999999999987643 3 568888854 45555555443
No 146
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.14 E-value=5.5e-11 Score=90.61 Aligned_cols=60 Identities=20% Similarity=0.470 Sum_probs=49.0
Q ss_pred EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcc
Q 018332 44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT 123 (358)
Q Consensus 44 ~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~ 123 (358)
.++|.|||+||++|+.++|.|.+++++++...+.+.++.++++... .++++|++.++|+.
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~--------------------~~~~~~~v~~~Pt~ 77 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR--------------------ELCSEFQVRGYPTL 77 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh--------------------hhHhhcCCCcCCEE
Confidence 4999999999999999999999999999763334777777776544 46788899888863
No 147
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.14 E-value=7.7e-11 Score=89.73 Aligned_cols=60 Identities=23% Similarity=0.480 Sum_probs=48.1
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
+|+ ++|+|||+||++|+.+.|.|.++++.++..+ +.++.++++.+. .++.+|+|.++
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~~--------------------~~~~~~~i~~~ 72 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLG--INVAKVDVTQEP--------------------GLSGRFFVTAL 72 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCC--eEEEEEEccCCH--------------------hHHHHcCCccc
Confidence 466 6899999999999999999999999765433 677777776544 46788899999
Q ss_pred Ccc
Q 018332 121 PFT 123 (358)
Q Consensus 121 P~~ 123 (358)
|+.
T Consensus 73 Pt~ 75 (101)
T cd02994 73 PTI 75 (101)
T ss_pred CEE
Confidence 964
No 148
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.14 E-value=1.4e-10 Score=97.18 Aligned_cols=60 Identities=27% Similarity=0.501 Sum_probs=54.7
Q ss_pred cc-ccCCCCc-eecccC-CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018332 26 EF-LLSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (358)
Q Consensus 26 ~~-l~~~~g~-v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~ 87 (358)
+| +.+.+|+ ++++++ +||+++|+||++||++|...+|.+.++++++.+.+ ++++.|++|.
T Consensus 6 ~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~ 68 (171)
T cd02969 6 DFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSND 68 (171)
T ss_pred CccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCc
Confidence 44 7888999 999998 89999999999999999999999999999998765 9999999975
No 149
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.14 E-value=7e-11 Score=89.94 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=49.3
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
++|+|+|.|+|+||+||+.+.|.|+++++++++. +.+..|++|..+ +++..|++.+.
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~--------------------dva~~y~I~am 69 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVP--------------------VYTQYFDISYI 69 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccH--------------------HHHHhcCceeC
Confidence 6899999999999999999999999999998543 445566666443 57888999888
Q ss_pred Ccc
Q 018332 121 PFT 123 (358)
Q Consensus 121 P~~ 123 (358)
|+.
T Consensus 70 Ptf 72 (114)
T cd02986 70 PST 72 (114)
T ss_pred cEE
Confidence 863
No 150
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.13 E-value=2.9e-10 Score=87.01 Aligned_cols=72 Identities=18% Similarity=0.412 Sum_probs=58.9
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
+++++|.||++||++|+.+.|.+.++++.++. ..++.++.+..+.. ...++++|++
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~----------------------~~~~~~~~~i 73 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN--EDDVVIAKVDADEA----------------------NKDLAKKYGV 73 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCC--CCCEEEEEEECCCc----------------------chhhHHhCCC
Confidence 57999999999999999999999999999862 24577777766652 2578999999
Q ss_pred CceeeEEEECCCCcEE
Q 018332 250 KGIPALVLIGPDGKTI 265 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~ 265 (358)
.++|++++++++|+..
T Consensus 74 ~~~P~~~~~~~~~~~~ 89 (105)
T cd02998 74 SGFPTLKFFPKGSTEP 89 (105)
T ss_pred CCcCEEEEEeCCCCCc
Confidence 9999999997776443
No 151
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.13 E-value=1.7e-10 Score=87.22 Aligned_cols=72 Identities=25% Similarity=0.498 Sum_probs=59.2
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
++++++|.||++||++|+.+.+.+.++++.++ ...++.++.++++. ...++++|+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~-----------------------~~~~~~~~~ 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELK--GDGKVVVAKVDCTA-----------------------NNDLCSEYG 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhc--cCCceEEEEeeccc-----------------------hHHHHHhCC
Confidence 34699999999999999999999999999884 12567777776664 368899999
Q ss_pred CCceeeEEEECCCCcEE
Q 018332 249 IKGIPALVLIGPDGKTI 265 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~ 265 (358)
|.++|++++++++|+.+
T Consensus 69 i~~~Pt~~~~~~~~~~~ 85 (101)
T cd02961 69 VRGYPTIKLFPNGSKEP 85 (101)
T ss_pred CCCCCEEEEEcCCCccc
Confidence 99999999998776433
No 152
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=8e-11 Score=111.20 Aligned_cols=73 Identities=22% Similarity=0.403 Sum_probs=52.9
Q ss_pred CCCcccCCC-CceecccccCcccccCCCCceecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEE
Q 018332 6 DQSKFIDSS-DFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84 (358)
Q Consensus 6 ~~~~~~~~~-~~~~~l~~~~~~~l~~~~g~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~ 84 (358)
+|..++++. ..+.+|+++..+.+.- -++|-|||+||||||+||+++.|.|+++++.+++. -.+|...
T Consensus 356 SqpiPe~~~~~pVkvvVgknfd~iv~---------de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~---~~vviAK 423 (493)
T KOG0190|consen 356 SQPIPEDNDRSPVKVVVGKNFDDIVL---------DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD---ENVVIAK 423 (493)
T ss_pred cCCCCcccccCCeEEEeecCHHHHhh---------ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCC---CCcEEEE
Confidence 455555554 4566666555543222 23799999999999999999999999999999885 2477777
Q ss_pred ecCChh
Q 018332 85 FDHDEN 90 (358)
Q Consensus 85 ~d~~~~ 90 (358)
+|.+.+
T Consensus 424 mDaTaN 429 (493)
T KOG0190|consen 424 MDATAN 429 (493)
T ss_pred eccccc
Confidence 776554
No 153
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.11 E-value=7.2e-10 Score=86.11 Aligned_cols=64 Identities=11% Similarity=0.260 Sum_probs=53.9
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
++.++|+||++||++|+.+.|.|.++.+.+ +.+.++.|..|.. ..++++|+|
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-----~~i~~~~vd~d~~-----------------------~~l~~~~~v 73 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-----DKLKLEIYDFDED-----------------------KEKAEKYGV 73 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-----CceEEEEEeCCcC-----------------------HHHHHHcCC
Confidence 467889999999999999999999998775 3467777877753 688999999
Q ss_pred CceeeEEEECCC
Q 018332 250 KGIPALVLIGPD 261 (358)
Q Consensus 250 ~~~P~~~lid~~ 261 (358)
.++|++++++.+
T Consensus 74 ~~vPt~~i~~~g 85 (113)
T cd02975 74 ERVPTTIFLQDG 85 (113)
T ss_pred CcCCEEEEEeCC
Confidence 999999999543
No 154
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.11 E-value=1e-10 Score=95.20 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=42.0
Q ss_pred CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018332 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90 (358)
Q Consensus 40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~ 90 (358)
.++++|+|+|||+||++|+.++|.|+++++++...+ +.++.|++|...+
T Consensus 45 ~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~--v~f~~VDvd~~~~ 93 (152)
T cd02962 45 DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN--LKFGKIDIGRFPN 93 (152)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--eEEEEEECCCCHH
Confidence 346899999999999999999999999999886543 8888888887664
No 155
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.11 E-value=3.1e-10 Score=96.30 Aligned_cols=88 Identities=15% Similarity=0.231 Sum_probs=63.5
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
+++|+|.||++||++|+.+.|.|.+++.+|.. +.+ +.++.+ .....|++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-----vkF--vkI~ad------------------------~~~~~~~i 150 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-----TKF--VKIIST------------------------QCIPNYPD 150 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-----CEE--EEEEhH------------------------HhHhhCCC
Confidence 46999999999999999999999999999863 444 444432 12478999
Q ss_pred CceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHH
Q 018332 250 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK 296 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~ 296 (358)
.++||++++ ++|+++.+ +.|...+....-..+.|+..|.
T Consensus 151 ~~lPTlliy-k~G~~v~~-------ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 151 KNLPTILVY-RNGDIVKQ-------FIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred CCCCEEEEE-ECCEEEEE-------EeCchhhCCCCCCHHHHHHHHH
Confidence 999999999 89988876 3343333222333455555444
No 156
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.11 E-value=1.2e-10 Score=92.95 Aligned_cols=48 Identities=10% Similarity=0.324 Sum_probs=41.0
Q ss_pred CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018332 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90 (358)
Q Consensus 40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~ 90 (358)
.++++|+|.|||+||+||+.+.|.|+++++++.+. ..|+.|++|..++
T Consensus 21 ~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~~d 68 (142)
T PLN00410 21 EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEVPD 68 (142)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCCHH
Confidence 35799999999999999999999999999998765 5677788776653
No 157
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.09 E-value=1.7e-10 Score=93.50 Aligned_cols=73 Identities=30% Similarity=0.557 Sum_probs=60.9
Q ss_pred ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChh-hhhhhHHHHHHHHHHhcCC-CceEEEEEEecCC---hhHHHHHHh
Q 018332 25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTRG-TELEVIFISFDHD---ENGFEEHFK 97 (358)
Q Consensus 25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~~~~~~~~l~~~~-~~~~iv~i~~d~~---~~~~~~~~~ 97 (358)
++| +.+.+|+ +++++++||+++|.||++||++ |...+|.+.++++++++.+ .++++++|+.|.. .+..+++..
T Consensus 3 p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~ 82 (142)
T cd02968 3 PDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAK 82 (142)
T ss_pred CceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHH
Confidence 355 7789999 9999999999999999999998 9999999999999998764 4599999999853 344455533
No 158
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.09 E-value=1.8e-10 Score=96.01 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=69.8
Q ss_pred Cccc-ccCCCCc-eecccCCCCEEEEEEeCCC-ChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCC
Q 018332 24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSD 100 (358)
Q Consensus 24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~ 100 (358)
.++| +.+.+|+ +++++++||+++|.||+.| |++|+..+|.|.++++++. + ++++.|+.|.. ...+++.....
T Consensus 24 ~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D~~-~~~~~f~~~~~ 98 (167)
T PRK00522 24 APDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISADLP-FAQKRFCGAEG 98 (167)
T ss_pred CCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCCCH-HHHHHHHHhCC
Confidence 3566 7889999 9999999999999999999 9999999999999999883 3 89999998853 33444444321
Q ss_pred ---Cccccc-ccceeeeccccCCCC
Q 018332 101 ---GTLIEE-DLIGLIEDYGADAYP 121 (358)
Q Consensus 101 ---~~~~~~-~~~~l~~~~gi~~~P 121 (358)
..++.+ .+..+++.||+...|
T Consensus 99 ~~~~~~lsD~~~~~~~~~~gv~~~~ 123 (167)
T PRK00522 99 LENVITLSDFRDHSFGKAYGVAIAE 123 (167)
T ss_pred CCCceEeecCCccHHHHHhCCeecc
Confidence 234444 344667777765444
No 159
>PTZ00062 glutaredoxin; Provisional
Probab=99.09 E-value=1.5e-09 Score=92.46 Aligned_cols=30 Identities=7% Similarity=0.090 Sum_probs=27.4
Q ss_pred CEEEEEEeCCCChhhhhhhHHHHHHHHHHh
Q 018332 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLR 72 (358)
Q Consensus 43 k~vlv~F~a~wC~~C~~~~p~~~~~~~~l~ 72 (358)
..++++|||+||++|+.+.|.+.++++++.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~ 47 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP 47 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC
Confidence 557899999999999999999999999873
No 160
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.08 E-value=3.1e-10 Score=91.81 Aligned_cols=94 Identities=23% Similarity=0.310 Sum_probs=71.1
Q ss_pred ccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCC-
Q 018332 25 VEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSD- 100 (358)
Q Consensus 25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~- 100 (358)
++| +.+.+|+ +++++++||+++|.|| +.||+.|...+|.+.++++++.+.+ ++++.|+.|.. +...++.....
T Consensus 4 p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~~-~~~~~~~~~~~~ 80 (140)
T cd03017 4 PDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDSV-ESHAKFAEKYGL 80 (140)
T ss_pred CCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCH-HHHHHHHHHhCC
Confidence 345 7889999 9999999999999999 5899999999999999999998766 89999998854 44555544421
Q ss_pred -CcccccccceeeeccccCCCC
Q 018332 101 -GTLIEEDLIGLIEDYGADAYP 121 (358)
Q Consensus 101 -~~~~~~~~~~l~~~~gi~~~P 121 (358)
..++.+....+.+.||+...+
T Consensus 81 ~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 81 PFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CceEEECCccHHHHHhCCcccc
Confidence 133444444566666665553
No 161
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.08 E-value=3.4e-10 Score=95.88 Aligned_cols=60 Identities=30% Similarity=0.480 Sum_probs=53.3
Q ss_pred ccc-ccCCCCc-eecccCCCCEE-EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 25 VEF-LLSRQGK-VPLSSCGGKTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 25 ~~~-l~~~~g~-v~l~~~~gk~v-lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
.+| +++.+|+ +++++++||+| ++.|||+||++|+..+|.|.++++++++.+ ++|+.|++|
T Consensus 21 p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~ 83 (183)
T PTZ00256 21 FEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCN 83 (183)
T ss_pred cceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecc
Confidence 455 7889999 99999999965 556699999999999999999999998877 999999975
No 162
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.07 E-value=4.8e-09 Score=90.18 Aligned_cols=115 Identities=20% Similarity=0.433 Sum_probs=93.7
Q ss_pred Ccee-cCCCceeeecccCCcEEEEEEeccCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH---HHHHHhhh-
Q 018332 153 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH---KEFDLNHS- 226 (358)
Q Consensus 153 ~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~---~~~~~~~~- 226 (358)
+|.+ +.+|+++++..++||+++|+|..+.||. |..++..|.++.++..+..+.++++++|++|++. +..+++..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 6888 9999999999999999999999999998 9999999999999988436689999999999754 44555555
Q ss_pred c-C-CccccccCchhHHHHHHHcCCCc---------------eeeEEEECCCCcEEec
Q 018332 227 I-M-PWLAIPYEDRARQDLCRIFNIKG---------------IPALVLIGPDGKTIST 267 (358)
Q Consensus 227 ~-~-~~~~~~~~~~~~~~l~~~~~v~~---------------~P~~~lid~~G~v~~~ 267 (358)
. . .|..+....+....++++|+|.. ...++++|++|+++..
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~ 186 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGT 186 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEE
Confidence 1 1 26666666667788999988752 2357999999999876
No 163
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.06 E-value=3e-11 Score=104.78 Aligned_cols=64 Identities=22% Similarity=0.454 Sum_probs=52.2
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP 121 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P 121 (358)
...++|.||||||+||+++.|.|.++..++++.|-++.+ -+.|++.- ..+++++||++||
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikV--GKlDaT~f------------------~aiAnefgiqGYP 102 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKV--GKLDATRF------------------PAIANEFGIQGYP 102 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceee--cccccccc------------------hhhHhhhccCCCc
Confidence 469999999999999999999999999999998855444 45555443 3678999999999
Q ss_pred cchH
Q 018332 122 FTRK 125 (358)
Q Consensus 122 ~~~~ 125 (358)
+.+.
T Consensus 103 TIk~ 106 (468)
T KOG4277|consen 103 TIKF 106 (468)
T ss_pred eEEE
Confidence 7543
No 164
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8.2e-11 Score=103.06 Aligned_cols=51 Identities=25% Similarity=0.539 Sum_probs=43.9
Q ss_pred cccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018332 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90 (358)
Q Consensus 37 l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~ 90 (358)
+....-++|+|+||+|||+||+.++|.+++++.+++.+ +.++.||||.+..
T Consensus 38 ~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p~ 88 (304)
T COG3118 38 IQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEPM 88 (304)
T ss_pred HHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcchh
Confidence 33344579999999999999999999999999999887 8888888887664
No 165
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.04 E-value=3.8e-10 Score=85.93 Aligned_cols=60 Identities=28% Similarity=0.687 Sum_probs=50.5
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
.+++++|+||++||++|+.+.|.|.++++++.. + +.++.|+++... .++++|++..+
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~--v~~~~vd~~~~~--------------------~l~~~~~v~~~ 72 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-N--VKFAKVDCDENK--------------------ELCKKYGVKSV 72 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-T--SEEEEEETTTSH--------------------HHHHHTTCSSS
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-c--cccchhhhhccc--------------------hhhhccCCCCC
Confidence 479999999999999999999999999999887 2 777777776554 57888888888
Q ss_pred Ccc
Q 018332 121 PFT 123 (358)
Q Consensus 121 P~~ 123 (358)
|+.
T Consensus 73 Pt~ 75 (103)
T PF00085_consen 73 PTI 75 (103)
T ss_dssp SEE
T ss_pred CEE
Confidence 863
No 166
>PTZ00062 glutaredoxin; Provisional
Probab=99.03 E-value=9.1e-10 Score=93.75 Aligned_cols=60 Identities=7% Similarity=0.082 Sum_probs=51.8
Q ss_pred cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018332 171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 250 (358)
Q Consensus 171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 250 (358)
..++++|||+||++|+.+.|.|.++.++|.+ +.++.+|. + |+|.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-------~~F~~V~~-------------------------d----~~V~ 61 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-------LEFYVVNL-------------------------A----DANN 61 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-------cEEEEEcc-------------------------c----cCcc
Confidence 5689999999999999999999999999964 66666663 1 8999
Q ss_pred ceeeEEEECCCCcEEec
Q 018332 251 GIPALVLIGPDGKTIST 267 (358)
Q Consensus 251 ~~P~~~lid~~G~v~~~ 267 (358)
++|+++++ ++|+.+.+
T Consensus 62 ~vPtfv~~-~~g~~i~r 77 (204)
T PTZ00062 62 EYGVFEFY-QNSQLINS 77 (204)
T ss_pred cceEEEEE-ECCEEEee
Confidence 99999999 88888877
No 167
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.03 E-value=4.1e-10 Score=91.48 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=53.5
Q ss_pred Cccc-ccCCCCc-eecccCCCCEEEEEEeCCC-ChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
.++| +.+.+|. +++++++||+++|.||+.| |++|+..+|.|.++++++. + +.++.|+.|..
T Consensus 6 aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~--~~vi~Is~d~~ 69 (143)
T cd03014 6 APDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N--TVVLTISADLP 69 (143)
T ss_pred CCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C--CEEEEEECCCH
Confidence 3455 7889999 9999999999999999998 6999999999999999873 3 88999998853
No 168
>PRK09381 trxA thioredoxin; Provisional
Probab=99.03 E-value=4.7e-10 Score=86.68 Aligned_cols=59 Identities=31% Similarity=0.623 Sum_probs=49.6
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
.+++++|+||++||++|+.++|.|+++++++... +.++.++++... .++.+|++..+
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~~--------------------~~~~~~~v~~~ 76 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP--------------------GTAPKYGIRGI 76 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCCh--------------------hHHHhCCCCcC
Confidence 3789999999999999999999999999998653 778888888655 35667788888
Q ss_pred Cc
Q 018332 121 PF 122 (358)
Q Consensus 121 P~ 122 (358)
|+
T Consensus 77 Pt 78 (109)
T PRK09381 77 PT 78 (109)
T ss_pred CE
Confidence 85
No 169
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.03 E-value=7.8e-10 Score=90.44 Aligned_cols=65 Identities=26% Similarity=0.343 Sum_probs=56.1
Q ss_pred ccCCCCc-eecccCCC-CEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018332 28 LLSRQGK-VPLSSCGG-KTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH 95 (358)
Q Consensus 28 l~~~~g~-v~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~ 95 (358)
+.+.+|+ +++++++| |+++|.|| ++||+.|+..+|.+.++++++++.+ ++++.|+.|.. +..+++
T Consensus 12 l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~~-~~~~~~ 79 (149)
T cd03018 12 LPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVDSP-FSLRAW 79 (149)
T ss_pred ecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCCCH-HHHHHH
Confidence 6788899 99999999 99988888 9999999999999999999998766 89999998753 334444
No 170
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.03 E-value=7e-10 Score=91.35 Aligned_cols=92 Identities=22% Similarity=0.331 Sum_probs=69.4
Q ss_pred ccc-ccCCCCc-eecccCCCCEEEEEEeCC-CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC
Q 018332 25 VEF-LLSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG 101 (358)
Q Consensus 25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~ 101 (358)
++| +.+.+|+ +++++++||+++|.||+. ||+.|+..++.+.++++++++.+ ++++.|+.|. .+...++..+...
T Consensus 11 p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~-~~~~~~~~~~~~~ 87 (154)
T PRK09437 11 PKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDK-PEKLSRFAEKELL 87 (154)
T ss_pred CCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHHHHhCC
Confidence 455 7889999 999999999999999976 68889999999999999998877 8999999884 4555565444221
Q ss_pred --cccccccceeeeccccCC
Q 018332 102 --TLIEEDLIGLIEDYGADA 119 (358)
Q Consensus 102 --~~~~~~~~~l~~~~gi~~ 119 (358)
.++.+....+.+.||+..
T Consensus 88 ~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 88 NFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred CCeEEECCCchHHHHhCCCc
Confidence 333444445555666543
No 171
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.02 E-value=7e-10 Score=84.93 Aligned_cols=66 Identities=18% Similarity=0.451 Sum_probs=50.5
Q ss_pred CCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccc
Q 018332 40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYG 116 (358)
Q Consensus 40 ~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 116 (358)
.+||+|+|+||++||++|+++.|.+ .++++.+.+ + +.++.++++.+... ...++++|+
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~vd~~~~~~~----------------~~~~~~~~~ 69 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-D--VVLLRADWTKNDPE----------------ITALLKRFG 69 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-C--eEEEEEecCCCCHH----------------HHHHHHHcC
Confidence 3589999999999999999999988 578887765 3 77878877653221 125678889
Q ss_pred cCCCCcch
Q 018332 117 ADAYPFTR 124 (358)
Q Consensus 117 i~~~P~~~ 124 (358)
+.++|+..
T Consensus 70 i~~~Pti~ 77 (104)
T cd02953 70 VFGPPTYL 77 (104)
T ss_pred CCCCCEEE
Confidence 99999643
No 172
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.02 E-value=3e-10 Score=98.30 Aligned_cols=59 Identities=20% Similarity=0.448 Sum_probs=48.9
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP 121 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P 121 (358)
+++++|+||||||+||+.++|.|+++++++++. +.+..++++... .++++|+|.+||
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~~--------------------~l~~~~~I~~~P 108 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRAL--------------------NLAKRFAIKGYP 108 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCcccH--------------------HHHHHcCCCcCC
Confidence 589999999999999999999999999998753 666666655443 578899999999
Q ss_pred cc
Q 018332 122 FT 123 (358)
Q Consensus 122 ~~ 123 (358)
+.
T Consensus 109 Tl 110 (224)
T PTZ00443 109 TL 110 (224)
T ss_pred EE
Confidence 64
No 173
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.02 E-value=8.8e-10 Score=89.07 Aligned_cols=91 Identities=23% Similarity=0.288 Sum_probs=68.0
Q ss_pred ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhC---CCc
Q 018332 28 LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSS---DGT 102 (358)
Q Consensus 28 l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~---~~~ 102 (358)
+.+.+|+ +++++++||+++|.|| +.||++|...+|.+.+++++++..+ ++++.|+.|. .....++..+. ...
T Consensus 7 l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d~-~~~~~~~~~~~~~~~~~ 83 (140)
T cd02971 7 LPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVDS-PFSHKAWAEKEGGLNFP 83 (140)
T ss_pred eccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HHHHHHHHhcccCCCce
Confidence 7788899 9999999999999999 7899999999999999999997665 8999999874 33344443332 113
Q ss_pred ccccccceeeeccccCCCC
Q 018332 103 LIEEDLIGLIEDYGADAYP 121 (358)
Q Consensus 103 ~~~~~~~~l~~~~gi~~~P 121 (358)
++.+....+.+.||+...|
T Consensus 84 ~l~D~~~~~~~~~g~~~~~ 102 (140)
T cd02971 84 LLSDPDGEFAKAYGVLIEK 102 (140)
T ss_pred EEECCChHHHHHcCCcccc
Confidence 3444444555666665554
No 174
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.01 E-value=1.3e-09 Score=85.71 Aligned_cols=79 Identities=24% Similarity=0.474 Sum_probs=57.7
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCc-hhHHHHHHHc
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYED-RARQDLCRIF 247 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 247 (358)
.++.++|+|+++|||+|+.+.|.|.++.++.+ ..|..|++|.+.. ..... ....++.+.|
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~------~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK------APIYYIDSENNGS-------------FEMSSLNDLTAFRSRF 82 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC------CcEEEEECCCccC-------------cCcccHHHHHHHHHHc
Confidence 36789999999999999999999999988733 5688999885420 00000 0123555665
Q ss_pred C----CCceeeEEEECCCCcEEec
Q 018332 248 N----IKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 248 ~----v~~~P~~~lid~~G~v~~~ 267 (358)
+ +.++||++++ ++|+.+.+
T Consensus 83 ~i~~~i~~~PT~v~~-k~Gk~v~~ 105 (122)
T TIGR01295 83 GIPTSFMGTPTFVHI-TDGKQVSV 105 (122)
T ss_pred CCcccCCCCCEEEEE-eCCeEEEE
Confidence 5 5569999999 89988876
No 175
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.01 E-value=4.6e-10 Score=95.41 Aligned_cols=67 Identities=28% Similarity=0.396 Sum_probs=56.5
Q ss_pred ccccCccc-ccC-CCCc---eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 20 LASEGVEF-LLS-RQGK---VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 20 l~~~~~~~-l~~-~~g~---v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
+....++| +.+ .+|+ +++++++||+++|+|| +.||++|+..+|.|.++++++.+.+ ++++.|+.|..
T Consensus 4 ~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~ 76 (187)
T TIGR03137 4 INTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTH 76 (187)
T ss_pred cCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCH
Confidence 34445677 555 4664 7788999999999999 9999999999999999999998777 88999999864
No 176
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.00 E-value=1e-09 Score=92.28 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=52.2
Q ss_pred ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
+.+.+|+ ++|++++||+|+|.|||+||++|++ +|.|+++++++++.| ++|+.++++
T Consensus 10 ~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~g--l~Vlg~p~n 66 (183)
T PRK10606 10 VTTIDGEVTTLEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQG--FVVLGFPCN 66 (183)
T ss_pred eECCCCCEEeHHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCC--eEEEEeecc
Confidence 6788999 9999999999999999999999974 999999999999887 999999986
No 177
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.00 E-value=1.1e-09 Score=92.02 Aligned_cols=92 Identities=22% Similarity=0.309 Sum_probs=66.4
Q ss_pred ccc-ccCCCC----c-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh--HHHHH
Q 018332 25 VEF-LLSRQG----K-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEH 95 (358)
Q Consensus 25 ~~~-l~~~~g----~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~--~~~~~ 95 (358)
++| +.+.+| + +++++++||+++|.|| +.||++|...+|.|.++++++.+.+ +.++.|++|..+. .+.+.
T Consensus 6 P~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~~~~~~~~~ 83 (173)
T cd03015 6 PDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHFSHLAWRNT 83 (173)
T ss_pred CCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHHHHHHHHHh
Confidence 455 555555 7 9999999999999999 8999999999999999999998876 8999999885432 22222
Q ss_pred Hhh------CCCcccccccceeeeccccC
Q 018332 96 FKS------SDGTLIEEDLIGLIEDYGAD 118 (358)
Q Consensus 96 ~~~------~~~~~~~~~~~~l~~~~gi~ 118 (358)
... ....++.+....+++.||+.
T Consensus 84 ~~~~~~~~~~~f~~l~D~~~~~~~~~gv~ 112 (173)
T cd03015 84 PRKEGGLGKINFPLLADPKKKISRDYGVL 112 (173)
T ss_pred hhhhCCccCcceeEEECCchhHHHHhCCc
Confidence 111 11234444455566666654
No 178
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.00 E-value=1.3e-09 Score=103.76 Aligned_cols=68 Identities=16% Similarity=0.372 Sum_probs=57.2
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
++++|+|+||++||++|+.+.|.|.+++++++. .++.++.|.+|.+. .....+.|+
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~---~~v~~~kVdvD~~~---------------------~~~~~~~~~ 425 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG---SGVKVAKFRADGDQ---------------------KEFAKQELQ 425 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc---CCcEEEEEECCCCc---------------------cHHHHHHcC
Confidence 578999999999999999999999999999974 56888889888652 123346899
Q ss_pred CCceeeEEEECC
Q 018332 249 IKGIPALVLIGP 260 (358)
Q Consensus 249 v~~~P~~~lid~ 260 (358)
|.++||+++|..
T Consensus 426 I~~~PTii~Fk~ 437 (463)
T TIGR00424 426 LGSFPTILFFPK 437 (463)
T ss_pred CCccceEEEEEC
Confidence 999999999943
No 179
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.00 E-value=1.2e-09 Score=90.84 Aligned_cols=55 Identities=27% Similarity=0.463 Sum_probs=46.3
Q ss_pred CcccccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 24 GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 24 ~~~~l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
.++| ...+|+ +++++++ +|.||++||++|++++|.+.++++++ + ++++.|++|.+
T Consensus 55 ~~~f-~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g--~~Vi~Vs~D~~ 110 (181)
T PRK13728 55 PRWF-RLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---G--FSVFPYTLDGQ 110 (181)
T ss_pred CCcc-CCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---C--CEEEEEEeCCC
Confidence 3444 335999 9999997 67799999999999999999999987 3 88999998854
No 180
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.00 E-value=4.9e-09 Score=76.37 Aligned_cols=62 Identities=23% Similarity=0.384 Sum_probs=51.0
Q ss_pred EEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCce
Q 018332 173 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI 252 (358)
Q Consensus 173 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 252 (358)
.+..||++||++|+...|.|.+++++++ ..+.++.|+.+.+ ..+.++|++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v~~v 54 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG----DAVEVEYINVMEN-----------------------PQKAMEYGIMAV 54 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc----CceEEEEEeCccC-----------------------HHHHHHcCCccC
Confidence 3568999999999999999999999886 4577777877654 467788999999
Q ss_pred eeEEEECCCCcE
Q 018332 253 PALVLIGPDGKT 264 (358)
Q Consensus 253 P~~~lid~~G~v 264 (358)
|++++ +|+.
T Consensus 55 Pt~~~---~g~~ 63 (82)
T TIGR00411 55 PAIVI---NGDV 63 (82)
T ss_pred CEEEE---CCEE
Confidence 99986 5654
No 181
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.99 E-value=3.5e-10 Score=107.49 Aligned_cols=66 Identities=17% Similarity=0.323 Sum_probs=53.3
Q ss_pred cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC
Q 018332 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD 118 (358)
Q Consensus 39 ~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 118 (358)
+.++++|+|+||||||++|+.++|.|++++++++..+ +.++.|++|.++.. ..+.+|+|.
T Consensus 368 ~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~~------------------~~~~~~~I~ 427 (463)
T TIGR00424 368 EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQKE------------------FAKQELQLG 427 (463)
T ss_pred hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCccH------------------HHHHHcCCC
Confidence 3468999999999999999999999999999997655 77888888865421 123678999
Q ss_pred CCCcch
Q 018332 119 AYPFTR 124 (358)
Q Consensus 119 ~~P~~~ 124 (358)
+||+..
T Consensus 428 ~~PTii 433 (463)
T TIGR00424 428 SFPTIL 433 (463)
T ss_pred ccceEE
Confidence 999643
No 182
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.99 E-value=6.8e-10 Score=84.69 Aligned_cols=59 Identities=24% Similarity=0.504 Sum_probs=49.4
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP 121 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P 121 (358)
+++++|+||++||++|+.+.|.|.++++++... +.++.++++... .++++|+|.++|
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~~--------------------~~~~~~~i~~~P 74 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVHQ--------------------SLAQQYGVRGFP 74 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcchH--------------------HHHHHCCCCccC
Confidence 578999999999999999999999999988654 677777776543 467888999999
Q ss_pred cc
Q 018332 122 FT 123 (358)
Q Consensus 122 ~~ 123 (358)
+.
T Consensus 75 ~~ 76 (103)
T cd03001 75 TI 76 (103)
T ss_pred EE
Confidence 64
No 183
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.99 E-value=1.3e-09 Score=83.15 Aligned_cols=67 Identities=19% Similarity=0.437 Sum_probs=53.4
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
+++++|+||++||++|+.+.|.+.++++.++. ..++.+..++.+. ..+...+++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~------------------------~~~~~~~~~ 71 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKG--DDNVVIAKMDATA------------------------NDVPSEFVV 71 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC--CCCEEEEEEeCcc------------------------hhhhhhccC
Confidence 58999999999999999999999999999863 2345566565553 346778899
Q ss_pred CceeeEEEECCCC
Q 018332 250 KGIPALVLIGPDG 262 (358)
Q Consensus 250 ~~~P~~~lid~~G 262 (358)
.++|+++++.+++
T Consensus 72 ~~~Pt~~~~~~~~ 84 (104)
T cd02995 72 DGFPTILFFPAGD 84 (104)
T ss_pred CCCCEEEEEcCCC
Confidence 9999999995444
No 184
>PRK10996 thioredoxin 2; Provisional
Probab=98.99 E-value=8.1e-10 Score=89.15 Aligned_cols=60 Identities=17% Similarity=0.460 Sum_probs=49.1
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
++|+|+|+||++||++|+.+.|.|.++++++... +.++.++++... .++++|+|.++
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~--------------------~l~~~~~V~~~ 107 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAER--------------------ELSARFRIRSI 107 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCCH--------------------HHHHhcCCCcc
Confidence 5899999999999999999999999999987654 666666666544 46778888888
Q ss_pred Ccc
Q 018332 121 PFT 123 (358)
Q Consensus 121 P~~ 123 (358)
|+.
T Consensus 108 Ptl 110 (139)
T PRK10996 108 PTI 110 (139)
T ss_pred CEE
Confidence 853
No 185
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.7e-09 Score=87.36 Aligned_cols=95 Identities=23% Similarity=0.358 Sum_probs=77.1
Q ss_pred ccCccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018332 22 SEGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS 98 (358)
Q Consensus 22 ~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~ 98 (358)
...++| |++.+|+ ++|++++||.|+|+|| ..|+|.|...+-.|.+.+.++++.| .+|+.||.|.. .+.++|..+
T Consensus 8 ~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds~-~~~~~F~~k 84 (157)
T COG1225 8 DKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDSP-KSHKKFAEK 84 (157)
T ss_pred CcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCCH-HHHHHHHHH
Confidence 345677 9999999 9999999999999999 7899999999999999999999987 88999999953 444555444
Q ss_pred CC--CcccccccceeeeccccCC
Q 018332 99 SD--GTLIEEDLIGLIEDYGADA 119 (358)
Q Consensus 99 ~~--~~~~~~~~~~l~~~~gi~~ 119 (358)
.. ..++.+....+++.||+..
T Consensus 85 ~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 85 HGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred hCCCceeeECCcHHHHHHhCccc
Confidence 22 3667777777888887643
No 186
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.96 E-value=1.3e-09 Score=94.79 Aligned_cols=70 Identities=13% Similarity=0.260 Sum_probs=55.2
Q ss_pred CCcEEEEEEec---cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018332 169 AGKTIGLYFGA---HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 245 (358)
Q Consensus 169 ~~k~vlv~F~a---~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (358)
++...++.|++ +||++|+.+.|.+.++.+++. ++++..+.+|.+. ...+++
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-----~~~i~~v~vd~~~---------------------~~~l~~ 71 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-----KLKLEIYDFDTPE---------------------DKEEAE 71 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-----CceEEEEecCCcc---------------------cHHHHH
Confidence 44445556777 999999999999999998874 3556677777543 478999
Q ss_pred HcCCCceeeEEEECCCCcEE
Q 018332 246 IFNIKGIPALVLIGPDGKTI 265 (358)
Q Consensus 246 ~~~v~~~P~~~lid~~G~v~ 265 (358)
+|+|.++||++++ ++|+.+
T Consensus 72 ~~~V~~~Pt~~~f-~~g~~~ 90 (215)
T TIGR02187 72 KYGVERVPTTIIL-EEGKDG 90 (215)
T ss_pred HcCCCccCEEEEE-eCCeee
Confidence 9999999999999 566665
No 187
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.95 E-value=1.1e-09 Score=83.65 Aligned_cols=64 Identities=23% Similarity=0.514 Sum_probs=50.0
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
++++++|.||++||++|+.+.|.+.++++.+...+ .+.++.++++.+.. ..++++|+|.++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~------------------~~~~~~~~i~~~ 76 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKPEH------------------DALKEEYNVKGF 76 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCCcc------------------HHHHHhCCCccc
Confidence 46799999999999999999999999999987532 25566666654212 357888999999
Q ss_pred Ccc
Q 018332 121 PFT 123 (358)
Q Consensus 121 P~~ 123 (358)
|+.
T Consensus 77 Pt~ 79 (104)
T cd02997 77 PTF 79 (104)
T ss_pred cEE
Confidence 964
No 188
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.94 E-value=1.5e-09 Score=114.27 Aligned_cols=90 Identities=17% Similarity=0.278 Sum_probs=69.9
Q ss_pred CCCc-eec-ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEe---cC--ChhHHHHHHhhCCC--
Q 018332 31 RQGK-VPL-SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF---DH--DENGFEEHFKSSDG-- 101 (358)
Q Consensus 31 ~~g~-v~l-~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~---d~--~~~~~~~~~~~~~~-- 101 (358)
.+|+ +++ ++++||+|+|+|||+||++|+..+|.|+++++++++++ +.++.|++ |. +.+.++++..+...
T Consensus 407 ~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~ 484 (1057)
T PLN02919 407 LNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHSAKFDNEKDLEAIRNAVLRYNISH 484 (1057)
T ss_pred cCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEecccccccccHHHHHHHHHHhCCCc
Confidence 5788 888 58999999999999999999999999999999998765 88888874 32 33455555554222
Q ss_pred cccccccceeeeccccCCCCc
Q 018332 102 TLIEEDLIGLIEDYGADAYPF 122 (358)
Q Consensus 102 ~~~~~~~~~l~~~~gi~~~P~ 122 (358)
.++.+....+.++|++.++|+
T Consensus 485 pvv~D~~~~~~~~~~V~~iPt 505 (1057)
T PLN02919 485 PVVNDGDMYLWRELGVSSWPT 505 (1057)
T ss_pred cEEECCchHHHHhcCCCccce
Confidence 334455567888999999995
No 189
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.94 E-value=7.2e-09 Score=76.69 Aligned_cols=68 Identities=26% Similarity=0.593 Sum_probs=57.7
Q ss_pred cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018332 171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 250 (358)
Q Consensus 171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 250 (358)
++++|.||++||++|..+.+.+.++.+. . .++.++.++.+.. ..+.+.|++.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~----~~~~~~~i~~~~~-----------------------~~~~~~~~v~ 62 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y----PKVKFVKVDVDEN-----------------------PELAEEYGVR 62 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-C----CCceEEEEECCCC-----------------------hhHHHhcCcc
Confidence 7899999999999999999999999887 2 6678888887753 5788999999
Q ss_pred ceeeEEEECCCCcEEec
Q 018332 251 GIPALVLIGPDGKTIST 267 (358)
Q Consensus 251 ~~P~~~lid~~G~v~~~ 267 (358)
++|+++++ ++|+++..
T Consensus 63 ~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 63 SIPTFLFF-KNGKEVDR 78 (93)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 56665544
No 190
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.93 E-value=5.2e-09 Score=103.53 Aligned_cols=74 Identities=22% Similarity=0.457 Sum_probs=57.7
Q ss_pred cCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018332 168 LAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 244 (358)
Q Consensus 168 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (358)
.+||+|+|+||++||++|+.+.+.. .++.++++ ++.++.++++.+. +...++.
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----~~~~v~vDvt~~~-------------------~~~~~l~ 527 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----DTVLLQADVTANN-------------------AEDVALL 527 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----CCEEEEEECCCCC-------------------hhhHHHH
Confidence 3589999999999999999988764 45656553 3566666665431 1246889
Q ss_pred HHcCCCceeeEEEECCCCcEE
Q 018332 245 RIFNIKGIPALVLIGPDGKTI 265 (358)
Q Consensus 245 ~~~~v~~~P~~~lid~~G~v~ 265 (358)
++|++.++|+++++|++|+++
T Consensus 528 ~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 528 KHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HHcCCCCCCEEEEECCCCCCc
Confidence 999999999999999999985
No 191
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.93 E-value=2.5e-09 Score=87.35 Aligned_cols=91 Identities=21% Similarity=0.313 Sum_probs=67.0
Q ss_pred cc-ccCCCCc-eecccCC-CC-EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhC--
Q 018332 26 EF-LLSRQGK-VPLSSCG-GK-TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSS-- 99 (358)
Q Consensus 26 ~~-l~~~~g~-v~l~~~~-gk-~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~-- 99 (358)
++ +.+.+|+ ++++++. +| +|+++|+++||++|+..+|.|.++++++.+.+ ++++.|+.|..+. ..++....
T Consensus 4 ~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~~-~~~~~~~~~~ 80 (149)
T cd02970 4 DFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPEK-LEAFDKGKFL 80 (149)
T ss_pred CccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHHH-HHHHHHhcCC
Confidence 44 7788999 9999874 45 55555569999999999999999999998777 9999999886543 33343332
Q ss_pred CCcccccccceeeeccccCC
Q 018332 100 DGTLIEEDLIGLIEDYGADA 119 (358)
Q Consensus 100 ~~~~~~~~~~~l~~~~gi~~ 119 (358)
...++.+....+.+.||+..
T Consensus 81 ~~p~~~D~~~~~~~~~g~~~ 100 (149)
T cd02970 81 PFPVYADPDRKLYRALGLVR 100 (149)
T ss_pred CCeEEECCchhHHHHcCcee
Confidence 22555666667778888743
No 192
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=98.93 E-value=1.2e-08 Score=87.26 Aligned_cols=119 Identities=19% Similarity=0.338 Sum_probs=95.4
Q ss_pred CCcee-cCCCceeeecccCCcEEEEEEeccCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEeCCC---CHHHHHHhhh
Q 018332 152 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKEFDLNHS 226 (358)
Q Consensus 152 p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~ 226 (358)
.+|.| +.+|+.++-.++.||++|++|..+.||. |..++..|.++.+++.+..+....=+||++|. +.+...++++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~ 199 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS 199 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence 46888 9999999999999999999999999998 99999999999998875433444468999998 5567777777
Q ss_pred cCC--ccccccCchhHHHHHHHcCCCc--ee-------------eEEEECCCCcEEecCcc
Q 018332 227 IMP--WLAIPYEDRARQDLCRIFNIKG--IP-------------ALVLIGPDGKTISTNGK 270 (358)
Q Consensus 227 ~~~--~~~~~~~~~~~~~l~~~~~v~~--~P-------------~~~lid~~G~v~~~~g~ 270 (358)
.+. .+.++...+..+.++++|.|.- -| .+|||||+|+.+..-|+
T Consensus 200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~Gr 260 (280)
T KOG2792|consen 200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGR 260 (280)
T ss_pred hcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcc
Confidence 543 4566666777889999998832 13 47999999999977543
No 193
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=5.2e-10 Score=105.91 Aligned_cols=136 Identities=18% Similarity=0.254 Sum_probs=87.6
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP 121 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P 121 (358)
.+.++|.||+|||+||+.++|.|.++++.++. +..+.+..++++.. ..+++++++..||
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~~~--------------------~~~~~~~~v~~~P 220 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDATVH--------------------KSLASRLEVRGYP 220 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccchH--------------------HHHhhhhcccCCc
Confidence 57899999999999999999999999999876 43466766666522 2578888899998
Q ss_pred cchHhHHH--HHhhhhhhhccchhhHhhhhccCC----cee-cCCCce-eee--cc--------cCCcEEEEEEeccCCc
Q 018332 122 FTRKRREE--LKAIDDSKRQGGKLEQLLAIEGRD----YVL-SRDHRK-ITV--SE--------LAGKTIGLYFGAHWCP 183 (358)
Q Consensus 122 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~p~----f~l-~~~g~~-~~l--~~--------~~~k~vlv~F~a~wC~ 183 (358)
+..-.... ....+...+....+...+.....+ -.+ ...+.. ... .+ ..-+..++.|+++||.
T Consensus 221 t~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 300 (383)
T KOG0191|consen 221 TLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCG 300 (383)
T ss_pred eEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhcchhh
Confidence 74322211 123334445555555554433222 111 111110 111 11 1124578889999999
Q ss_pred ccHhhHHHHHHHHHH
Q 018332 184 PCRSFTSQLIEVYNE 198 (358)
Q Consensus 184 ~C~~~~~~l~~l~~~ 198 (358)
+|....|.+...+..
T Consensus 301 ~~~~~~~~~~~~~~~ 315 (383)
T KOG0191|consen 301 HCGGFAPVYEDKAEL 315 (383)
T ss_pred cccccchhHHHHHhc
Confidence 999999999887776
No 194
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.92 E-value=1.7e-09 Score=82.48 Aligned_cols=61 Identities=20% Similarity=0.481 Sum_probs=47.2
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
.+++++|+||++||++|+.+.|.|.++++.++.. ..+.++.++++.+ +++..+++.++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~---------------------~~~~~~~~~~~ 74 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATAN---------------------DVPSEFVVDGF 74 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcch---------------------hhhhhccCCCC
Confidence 3689999999999999999999999999998662 2366666666543 24566777888
Q ss_pred Ccc
Q 018332 121 PFT 123 (358)
Q Consensus 121 P~~ 123 (358)
|+.
T Consensus 75 Pt~ 77 (104)
T cd02995 75 PTI 77 (104)
T ss_pred CEE
Confidence 853
No 195
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.92 E-value=1.7e-09 Score=82.12 Aligned_cols=62 Identities=21% Similarity=0.527 Sum_probs=49.8
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
++++++|.||++||++|+.+.|.|+++++.++..+ .+.++.++++... .++++|++.++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~--------------------~~~~~~~i~~~ 70 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAEK--------------------DLASRFGVSGF 70 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccchH--------------------HHHHhCCCCcC
Confidence 68999999999999999999999999999987642 3556655555433 56788899999
Q ss_pred Ccc
Q 018332 121 PFT 123 (358)
Q Consensus 121 P~~ 123 (358)
|+.
T Consensus 71 P~~ 73 (102)
T TIGR01126 71 PTI 73 (102)
T ss_pred CEE
Confidence 953
No 196
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.92 E-value=2.5e-09 Score=89.45 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=66.3
Q ss_pred ceecccccCcccccCCCC---c-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEE------EEEEe
Q 018332 16 FLTVLASEGVEFLLSRQG---K-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEV------IFISF 85 (358)
Q Consensus 16 ~~~~l~~~~~~~l~~~~g---~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~i------v~i~~ 85 (358)
+-++-++..-+.+.+.++ + ++.++++||+++|.|||+||++|+.-+|.++++ ++.+ +.+ +.||.
T Consensus 29 ~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~--~~~~~y~~t~~IN~ 102 (184)
T TIGR01626 29 VPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAK--FPPVKYQTTTIINA 102 (184)
T ss_pred CCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcC--CCcccccceEEEEC
Confidence 334444444444443332 4 778889999999999999999999999999988 3334 777 88998
Q ss_pred cCChhHHHHHHh----h---CCC--cccccccceeeeccccCCCCcc
Q 018332 86 DHDENGFEEHFK----S---SDG--TLIEEDLIGLIEDYGADAYPFT 123 (358)
Q Consensus 86 d~~~~~~~~~~~----~---~~~--~~~~~~~~~l~~~~gi~~~P~~ 123 (358)
|.+......|.. + .++ .++.+....+...||+.+.|.+
T Consensus 103 dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T 149 (184)
T TIGR01626 103 DDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSA 149 (184)
T ss_pred ccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCCCCce
Confidence 865433333322 2 222 2444444456678888777753
No 197
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.91 E-value=1.6e-09 Score=84.26 Aligned_cols=57 Identities=16% Similarity=0.238 Sum_probs=45.4
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP 121 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P 121 (358)
+++|+|+||+|||++|+.+.|.|+++++++.. +.++.|+++.. .++++|+|.++|
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~~~---------------------~l~~~~~i~~~P 78 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAEKA---------------------FLVNYLDIKVLP 78 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEchhh---------------------HHHHhcCCCcCC
Confidence 58999999999999999999999999998743 45666555532 357788888888
Q ss_pred cc
Q 018332 122 FT 123 (358)
Q Consensus 122 ~~ 123 (358)
+.
T Consensus 79 t~ 80 (113)
T cd02957 79 TL 80 (113)
T ss_pred EE
Confidence 53
No 198
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.91 E-value=2.5e-09 Score=81.74 Aligned_cols=63 Identities=24% Similarity=0.538 Sum_probs=49.4
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
.+|+++|.||++||++|+.+.|.|.++++.++.. .++.++.++++.. . ..++++|++.++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~-~------------------~~~~~~~~i~~~ 76 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEA-N------------------KDLAKKYGVSGF 76 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCc-c------------------hhhHHhCCCCCc
Confidence 3679999999999999999999999999998732 2366666666541 1 257888999999
Q ss_pred Ccc
Q 018332 121 PFT 123 (358)
Q Consensus 121 P~~ 123 (358)
|+.
T Consensus 77 P~~ 79 (105)
T cd02998 77 PTL 79 (105)
T ss_pred CEE
Confidence 964
No 199
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.90 E-value=1.6e-09 Score=88.46 Aligned_cols=47 Identities=28% Similarity=0.531 Sum_probs=38.7
Q ss_pred Cc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 33 GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 33 g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
|+ ++++ ++.+|.|||+||++|++.+|.+.++++++ + ++++.|+.|..
T Consensus 44 G~~~~l~----~~~lvnFWAsWCppCr~e~P~L~~l~~~~---~--~~Vi~Vs~d~~ 91 (153)
T TIGR02738 44 GRHANQD----DYALVFFYQSTCPYCHQFAPVLKRFSQQF---G--LPVYAFSLDGQ 91 (153)
T ss_pred chhhhcC----CCEEEEEECCCChhHHHHHHHHHHHHHHc---C--CcEEEEEeCCC
Confidence 44 5554 44599999999999999999999999887 2 67999998853
No 200
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.2e-09 Score=92.81 Aligned_cols=64 Identities=34% Similarity=0.679 Sum_probs=52.0
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeec
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIED 114 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 114 (358)
-.|+...+|.|+|+|+|.||+||++++|.|..++.+|.. .|+..+|.++. ...+..
T Consensus 14 ~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~------aVFlkVdVd~c------------------~~taa~ 69 (288)
T KOG0908|consen 14 RELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG------AVFLKVDVDEC------------------RGTAAT 69 (288)
T ss_pred HhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc------cEEEEEeHHHh------------------hchhhh
Confidence 345555689999999999999999999999999999843 56666666654 356788
Q ss_pred cccCCCCc
Q 018332 115 YGADAYPF 122 (358)
Q Consensus 115 ~gi~~~P~ 122 (358)
+||.+.|+
T Consensus 70 ~gV~amPT 77 (288)
T KOG0908|consen 70 NGVNAMPT 77 (288)
T ss_pred cCcccCce
Confidence 99999996
No 201
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.6e-08 Score=77.87 Aligned_cols=111 Identities=19% Similarity=0.203 Sum_probs=83.6
Q ss_pred Ccee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHHHHHh
Q 018332 153 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFDLN 224 (358)
Q Consensus 153 ~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~ 224 (358)
+|.+ +.+|+.+++++++||++||.-.|+.|+...+ ...|+.||++|++ .++.|+++.++. +.+++.++
T Consensus 7 d~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~---~Gf~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 7 DFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKD---KGFEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred cceeeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhh---CCcEEEeccccccccCCCCCHHHHHHH
Confidence 4666 8999999999999999999999999999875 4569999999997 999999999863 55788888
Q ss_pred hhcCCccccccCc----------hhHHHHHHHcC-------CCceeeEEEECCCCcEEec
Q 018332 225 HSIMPWLAIPYED----------RARQDLCRIFN-------IKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 225 ~~~~~~~~~~~~~----------~~~~~l~~~~~-------v~~~P~~~lid~~G~v~~~ 267 (358)
....-...+|... ..-..|...-. |..-=+-+|||++|+|+.|
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~R 142 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKR 142 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEe
Confidence 8754445555421 11223333221 2223367999999999999
No 202
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.89 E-value=1.7e-09 Score=84.52 Aligned_cols=52 Identities=19% Similarity=0.569 Sum_probs=40.7
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~ 89 (358)
+..+..+||+|+|.|||+||++|+.+.|.+.+..+.... . ..++.+++|.+.
T Consensus 12 l~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~--~~fv~v~vd~~~ 63 (117)
T cd02959 12 IKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-S--HNFVMVNLEDDE 63 (117)
T ss_pred HHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-c--CcEEEEEecCCC
Confidence 455566799999999999999999999999997775432 2 347777777654
No 203
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.89 E-value=3.2e-09 Score=80.15 Aligned_cols=60 Identities=23% Similarity=0.505 Sum_probs=48.9
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
.+|+|+|+||++||++|+.+.|.+.++++++... +.++.+++|.+. ++..++++.++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~~--------------------~l~~~~~v~~v 68 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDEDQ--------------------EIAEAAGIMGT 68 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH--------------------HHHHHCCCeec
Confidence 5799999999999999999999999999988653 677777776554 35677788788
Q ss_pred Ccc
Q 018332 121 PFT 123 (358)
Q Consensus 121 P~~ 123 (358)
|+.
T Consensus 69 Pt~ 71 (97)
T cd02949 69 PTV 71 (97)
T ss_pred cEE
Confidence 753
No 204
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.88 E-value=2.5e-09 Score=84.81 Aligned_cols=73 Identities=23% Similarity=0.408 Sum_probs=48.2
Q ss_pred CCC-CEEEEEEeCCCChhhhhhhHHHH---HHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecc
Q 018332 40 CGG-KTICLFFSANWCRPCKTFTPQLV---QLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDY 115 (358)
Q Consensus 40 ~~g-k~vlv~F~a~wC~~C~~~~p~~~---~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 115 (358)
.+| |+|+|.||++||++|+.++|.+. ++.+.+++. +.++.+++|.+.... .+ .+ .......++.+|
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~i~~d~~~~~~-~~----~~--~~~~~~~l~~~~ 80 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAH---FVVVYINIDGDKEVT-DF----DG--EALSEKELARKY 80 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhh---eEEEEEEccCCceee-cc----CC--CCccHHHHHHHc
Confidence 468 99999999999999999999885 566666542 778888877543210 00 00 001123456777
Q ss_pred ccCCCCc
Q 018332 116 GADAYPF 122 (358)
Q Consensus 116 gi~~~P~ 122 (358)
++.++|+
T Consensus 81 ~v~~~Pt 87 (125)
T cd02951 81 RVRFTPT 87 (125)
T ss_pred CCccccE
Confidence 7777775
No 205
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.88 E-value=3.2e-09 Score=80.01 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=45.7
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP 121 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P 121 (358)
+++|+|.||++||++|+.+.|.|.++++++.. ++.++.++.+.. .+++++|++..+|
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~--------------------~~~~~~~~i~~~P 70 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEEL--------------------PEISEKFEITAVP 70 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccC--------------------HHHHHhcCCcccc
Confidence 79999999999999999999999999998722 255555544432 2567888888888
Q ss_pred cc
Q 018332 122 FT 123 (358)
Q Consensus 122 ~~ 123 (358)
+.
T Consensus 71 t~ 72 (97)
T cd02984 71 TF 72 (97)
T ss_pred EE
Confidence 63
No 206
>PTZ00051 thioredoxin; Provisional
Probab=98.87 E-value=2.6e-09 Score=80.71 Aligned_cols=59 Identities=19% Similarity=0.386 Sum_probs=46.9
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
.+++++|.||++||++|+.+.|.|.++++++.+ +.++.++++... .++++|++.++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~~--------------------~~~~~~~v~~~ 72 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDVDELS--------------------EVAEKENITSM 72 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEECcchH--------------------HHHHHCCCcee
Confidence 478999999999999999999999999986532 556666665433 46788888888
Q ss_pred Ccc
Q 018332 121 PFT 123 (358)
Q Consensus 121 P~~ 123 (358)
|+.
T Consensus 73 Pt~ 75 (98)
T PTZ00051 73 PTF 75 (98)
T ss_pred eEE
Confidence 863
No 207
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.87 E-value=5.1e-09 Score=88.52 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=61.7
Q ss_pred eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh------CCCcccccc
Q 018332 35 VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS------SDGTLIEED 107 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~------~~~~~~~~~ 107 (358)
++|++++||+++|.|| +.||+.|...++.|.++++++.+.+ ++++.||.|.. ....++... ....++.+.
T Consensus 24 v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~-~~~~a~~~~~~~~~~l~fpllsD~ 100 (187)
T PRK10382 24 VTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTH-FTHKAWHSSSETIAKIKYAMIGDP 100 (187)
T ss_pred EEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCH-HHHHHHHHhhccccCCceeEEEcC
Confidence 8889999999999999 9999999999999999999999887 89999999853 223333221 122455555
Q ss_pred cceeeecccc
Q 018332 108 LIGLIEDYGA 117 (358)
Q Consensus 108 ~~~l~~~~gi 117 (358)
...+++.||+
T Consensus 101 ~~~ia~~ygv 110 (187)
T PRK10382 101 TGALTRNFDN 110 (187)
T ss_pred chHHHHHcCC
Confidence 5666666665
No 208
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.87 E-value=8.9e-09 Score=80.84 Aligned_cols=101 Identities=12% Similarity=0.235 Sum_probs=63.5
Q ss_pred ccCCcEEEEEEeccCCcccHhhHHHHH---HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHH
Q 018332 167 ELAGKTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL 243 (358)
Q Consensus 167 ~~~~k~vlv~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (358)
.-.+|+|+|+|++.||++|+.+...+- ++.+..+ .++.+|-+..|... ...
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~----~~Fv~V~l~~d~td----------------------~~~ 73 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ----EDFIMLNLVHETTD----------------------KNL 73 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH----hCeEEEEEEeccCC----------------------CCc
Confidence 346899999999999999999987542 2333332 34444444444221 000
Q ss_pred HHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhc
Q 018332 244 CRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG 299 (358)
Q Consensus 244 ~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~ 299 (358)
. ..+ .++|+++|+|++|+++.+- .-.++...|-..+..+..|.+.+++..
T Consensus 74 ~-~~g-~~vPtivFld~~g~vi~~i----~Gy~~~~~~~y~~~~~~~~~~~m~~a~ 123 (130)
T cd02960 74 S-PDG-QYVPRIMFVDPSLTVRADI----TGRYSNRLYTYEPADIPLLIENMKKAL 123 (130)
T ss_pred C-ccC-cccCeEEEECCCCCCcccc----cccccCccceeCcCcHHHHHHHHHHHH
Confidence 0 122 5799999999999998763 224445556566666777766666544
No 209
>PLN02309 5'-adenylylsulfate reductase
Probab=98.87 E-value=1.4e-08 Score=96.64 Aligned_cols=68 Identities=18% Similarity=0.423 Sum_probs=56.9
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH-Hc
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IF 247 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 247 (358)
++++++|+||++||++|+.+.|.+.+++++|.. .++.|+.|++|.. ...++. .|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~---~~V~f~kVD~d~~----------------------~~~la~~~~ 418 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG---SGVKVAKFRADGD----------------------QKEFAKQEL 418 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCc----------------------chHHHHhhC
Confidence 578999999999999999999999999999974 5688888887733 245664 69
Q ss_pred CCCceeeEEEECCC
Q 018332 248 NIKGIPALVLIGPD 261 (358)
Q Consensus 248 ~v~~~P~~~lid~~ 261 (358)
+|.++||++++.++
T Consensus 419 ~I~~~PTil~f~~g 432 (457)
T PLN02309 419 QLGSFPTILLFPKN 432 (457)
T ss_pred CCceeeEEEEEeCC
Confidence 99999999999433
No 210
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.85 E-value=3.9e-09 Score=82.03 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=51.8
Q ss_pred CCCCEEEEEEeC-------CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceee
Q 018332 40 CGGKTICLFFSA-------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLI 112 (358)
Q Consensus 40 ~~gk~vlv~F~a-------~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~ 112 (358)
.+|++|+|.||| +||++|+.+.|.++++++++... +.++.|++|... .+.+....+.
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~-------------~w~d~~~~~~ 82 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRP-------------YWRDPNNPFR 82 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcc-------------cccCcchhhH
Confidence 358999999999 99999999999999999988643 678888877532 0001113567
Q ss_pred eccccC-CCCcch
Q 018332 113 EDYGAD-AYPFTR 124 (358)
Q Consensus 113 ~~~gi~-~~P~~~ 124 (358)
..|+|. +.|+..
T Consensus 83 ~~~~I~~~iPT~~ 95 (119)
T cd02952 83 TDPKLTTGVPTLL 95 (119)
T ss_pred hccCcccCCCEEE
Confidence 888887 899743
No 211
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.85 E-value=1.1e-08 Score=79.46 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=40.5
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH 95 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~ 95 (358)
++++|+|+||+|||++|+.+.|.|+++++++.. +.++.|+++.......++
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~~~l~~~~ 71 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKAPFLVEKL 71 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccCHHHHHHC
Confidence 468999999999999999999999999987742 667777777665433333
No 212
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.85 E-value=5.9e-09 Score=89.60 Aligned_cols=64 Identities=23% Similarity=0.391 Sum_probs=54.2
Q ss_pred cCccc-ccCCCCceecccCCCCEEEE-EEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 23 EGVEF-LLSRQGKVPLSSCGGKTICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 23 ~~~~~-l~~~~g~v~l~~~~gk~vlv-~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
..++| +.+..|.+++++++||.++| .|++.||+.|...++.|.++++++++.+ ++++.|++|..
T Consensus 7 ~aP~F~~~~~~g~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~ 72 (202)
T PRK13190 7 KAPDFTVNTTKGPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSI 72 (202)
T ss_pred CCCCcEEecCCCcEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCH
Confidence 33566 55666669999999997766 5789999999999999999999999877 89999999964
No 213
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.84 E-value=5.9e-09 Score=90.24 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=71.3
Q ss_pred cccccCccc-ccCCCCc-eecccCCCCEE-EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh--hHHH
Q 018332 19 VLASEGVEF-LLSRQGK-VPLSSCGGKTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGFE 93 (358)
Q Consensus 19 ~l~~~~~~~-l~~~~g~-v~l~~~~gk~v-lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~--~~~~ 93 (358)
.+....++| +.+++|+ +.+++++||.+ |+.|++.||++|...++.|.++++++.+.| ++++.||+|... ..+.
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~ 80 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWV 80 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence 455566788 7888999 88899999975 567789999999999999999999999887 899999999642 2344
Q ss_pred HHHhh-----CCCcccccccceeeecccc
Q 018332 94 EHFKS-----SDGTLIEEDLIGLIEDYGA 117 (358)
Q Consensus 94 ~~~~~-----~~~~~~~~~~~~l~~~~gi 117 (358)
++..+ ....++.+...++++.||+
T Consensus 81 ~~i~~~~~~~i~fPil~D~~~~va~~yg~ 109 (215)
T PRK13599 81 EWIKDNTNIAIPFPVIADDLGKVSNQLGM 109 (215)
T ss_pred HhHHHhcCCCCceeEEECCCchHHHHcCC
Confidence 44332 1123444444455666654
No 214
>PTZ00102 disulphide isomerase; Provisional
Probab=98.84 E-value=9e-09 Score=100.57 Aligned_cols=72 Identities=17% Similarity=0.398 Sum_probs=57.7
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
+++.++|.||++||++|+.+.|.+.++++.++. ...++.+..|.++. ...++++|+
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~-~~~~i~~~~vd~~~-----------------------~~~l~~~~~ 103 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKE-KKSEIVLASVDATE-----------------------EMELAQEFG 103 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHh-cCCcEEEEEEECCC-----------------------CHHHHHhcC
Confidence 468999999999999999999999999988864 22345555555544 368999999
Q ss_pred CCceeeEEEECCCCcE
Q 018332 249 IKGIPALVLIGPDGKT 264 (358)
Q Consensus 249 v~~~P~~~lid~~G~v 264 (358)
|.++|++++++.++.+
T Consensus 104 i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 104 VRGYPTIKFFNKGNPV 119 (477)
T ss_pred CCcccEEEEEECCceE
Confidence 9999999999655544
No 215
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.84 E-value=3.4e-09 Score=82.56 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=48.2
Q ss_pred CCEEEEEEeCCCChh--hh--hhhHHHHHHHHHHh-cCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccc
Q 018332 42 GKTICLFFSANWCRP--CK--TFTPQLVQLYDTLR-TRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYG 116 (358)
Q Consensus 42 gk~vlv~F~a~wC~~--C~--~~~p~~~~~~~~l~-~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 116 (358)
..+++++|||+||+| |+ ++.|.+.+++.++- ..+ +.++.|++|.+. +++.+||
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~--v~~~kVD~d~~~--------------------~La~~~~ 84 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG--IGFGLVDSKKDA--------------------KVAKKLG 84 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC--CEEEEEeCCCCH--------------------HHHHHcC
Confidence 468999999999977 99 88899998888873 333 777777777654 5789999
Q ss_pred cCCCCcch
Q 018332 117 ADAYPFTR 124 (358)
Q Consensus 117 i~~~P~~~ 124 (358)
|.++|+..
T Consensus 85 I~~iPTl~ 92 (120)
T cd03065 85 LDEEDSIY 92 (120)
T ss_pred CccccEEE
Confidence 99999743
No 216
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.84 E-value=2.6e-09 Score=93.20 Aligned_cols=91 Identities=19% Similarity=0.359 Sum_probs=72.8
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP 121 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P 121 (358)
..+|+|.|||.||+.+++++|.|++++..+++..++-.+|..++|++.+. .++.+|.|..||
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~------------------~ia~ky~I~KyP 74 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKED------------------DIADKYHINKYP 74 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhh------------------HHhhhhccccCc
Confidence 47899999999999999999999999999999887788999999998763 789999999999
Q ss_pred cchHhHHH--HHhhhhhhhccchhhHhhhhc
Q 018332 122 FTRKRREE--LKAIDDSKRQGGKLEQLLAIE 150 (358)
Q Consensus 122 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 150 (358)
+.+.+... ....+.+.+..+.+...+..+
T Consensus 75 TlKvfrnG~~~~rEYRg~RsVeaL~efi~kq 105 (375)
T KOG0912|consen 75 TLKVFRNGEMMKREYRGQRSVEALIEFIEKQ 105 (375)
T ss_pred eeeeeeccchhhhhhccchhHHHHHHHHHHH
Confidence 87665542 222455555556666665544
No 217
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.84 E-value=5.5e-09 Score=79.10 Aligned_cols=58 Identities=26% Similarity=0.600 Sum_probs=47.8
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP 121 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P 121 (358)
+++++|+||++||++|+.+.|.|.++++++... +.++.++++.+. .++++|++..+|
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~--------------------~~~~~~~v~~~P 70 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDENP--------------------DIAAKYGIRSIP 70 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCCH--------------------HHHHHcCCCcCC
Confidence 679999999999999999999999999888643 778888777654 356777887777
Q ss_pred c
Q 018332 122 F 122 (358)
Q Consensus 122 ~ 122 (358)
+
T Consensus 71 ~ 71 (101)
T TIGR01068 71 T 71 (101)
T ss_pred E
Confidence 5
No 218
>PLN02309 5'-adenylylsulfate reductase
Probab=98.83 E-value=4.2e-09 Score=100.18 Aligned_cols=63 Identities=17% Similarity=0.379 Sum_probs=51.3
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeee-ccccCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIE-DYGADA 119 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~gi~~ 119 (358)
++|+++|+||||||++|+.+.|.|.++++++...+ +.++.+++|.+.. .++. +|+|.+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~~~-------------------~la~~~~~I~~ 422 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGDQK-------------------EFAKQELQLGS 422 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCcch-------------------HHHHhhCCCce
Confidence 68999999999999999999999999999997654 7787777773322 3554 589999
Q ss_pred CCcch
Q 018332 120 YPFTR 124 (358)
Q Consensus 120 ~P~~~ 124 (358)
||+..
T Consensus 423 ~PTil 427 (457)
T PLN02309 423 FPTIL 427 (457)
T ss_pred eeEEE
Confidence 99743
No 219
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7.3e-08 Score=77.53 Aligned_cols=115 Identities=21% Similarity=0.258 Sum_probs=91.9
Q ss_pred ccCCcee----cCCCceeeecccCCcEEEEEEeccC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC--HHHHH
Q 018332 150 EGRDYVL----SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--HKEFD 222 (358)
Q Consensus 150 ~~p~f~l----~~~g~~~~l~~~~~k~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~--~~~~~ 222 (358)
++|+|.- +..-+.+++++++||+|++.||... .-.|..++-.+...+.+|++ -+-+|+++++|.. .-+|.
T Consensus 9 p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~---~n~eVig~S~DS~fshlAW~ 85 (196)
T KOG0852|consen 9 PAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRK---LNTEVLGISTDSVFSHLAWI 85 (196)
T ss_pred CCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHh---cCCeEEEEeccchhhhhhHh
Confidence 4466643 5555688999999999999998544 34599999999999999987 8899999999974 35666
Q ss_pred HhhhcCC---ccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018332 223 LNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST 267 (358)
Q Consensus 223 ~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 267 (358)
..-++.. -.++|...|.+.++++.|||- .+..+++||++|.++..
T Consensus 86 ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~i 139 (196)
T KOG0852|consen 86 NTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQI 139 (196)
T ss_pred cCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEe
Confidence 6655444 356999999999999999983 46789999999998764
No 220
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.81 E-value=3.1e-08 Score=69.19 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=49.6
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
+..|+++||++|+...+.|+++.+.+ .++.+..+.++.. .++++.|++.++|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~-----~~i~~~~id~~~~-----------------------~~l~~~~~i~~vP 54 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN-----PNISAEMIDAAEF-----------------------PDLADEYGVMSVP 54 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC-----CceEEEEEEcccC-----------------------HhHHHHcCCcccC
Confidence 56899999999999999999886654 4577777776654 5688899999999
Q ss_pred eEEEECCCCcEEec
Q 018332 254 ALVLIGPDGKTIST 267 (358)
Q Consensus 254 ~~~lid~~G~v~~~ 267 (358)
++++ +|++++.
T Consensus 55 ti~i---~~~~~~~ 65 (67)
T cd02973 55 AIVI---NGKVEFV 65 (67)
T ss_pred EEEE---CCEEEEe
Confidence 9865 4566654
No 221
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.80 E-value=6.5e-08 Score=75.29 Aligned_cols=76 Identities=13% Similarity=0.228 Sum_probs=55.1
Q ss_pred ccCCcEEEEEEeccCCcccHhhHHH-H--HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHH
Q 018332 167 ELAGKTIGLYFGAHWCPPCRSFTSQ-L--IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL 243 (358)
Q Consensus 167 ~~~~k~vlv~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (358)
.-++|+++|+|+++||++|..+... | .++.+.++ .+ +|.+..|.+. .....+
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~----~~--~v~~~~d~~~-------------------~e~~~~ 68 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR----EN--FIFWQCDIDS-------------------SEGQRF 68 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH----hC--EEEEEecCCC-------------------ccHHHH
Confidence 3457999999999999999998653 2 23334443 33 4444444321 014678
Q ss_pred HHHcCCCceeeEEEECC-CCcEEec
Q 018332 244 CRIFNIKGIPALVLIGP-DGKTIST 267 (358)
Q Consensus 244 ~~~~~v~~~P~~~lid~-~G~v~~~ 267 (358)
+..|++.++|+++++|+ +|+++.+
T Consensus 69 ~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 69 LQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HHHhCccCCCeEEEEeCccCcEeEE
Confidence 99999999999999999 8999887
No 222
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.80 E-value=3.1e-08 Score=96.26 Aligned_cols=71 Identities=23% Similarity=0.497 Sum_probs=57.6
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
++++++|.|||+||++|+.+.|.+.++++.+.. .+.++.++.|.++. ...++++|+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~-~~~~v~~~~vd~~~-----------------------~~~l~~~~~ 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKK-KGPPIKLAKVDATE-----------------------EKDLAQKYG 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhh-cCCceEEEEEECCC-----------------------cHHHHHhCC
Confidence 467899999999999999999999999998875 22346666666654 368999999
Q ss_pred CCceeeEEEECCCCcE
Q 018332 249 IKGIPALVLIGPDGKT 264 (358)
Q Consensus 249 v~~~P~~~lid~~G~v 264 (358)
|.++||++++ ++|+.
T Consensus 73 i~~~Pt~~~~-~~g~~ 87 (462)
T TIGR01130 73 VSGYPTLKIF-RNGED 87 (462)
T ss_pred CccccEEEEE-eCCcc
Confidence 9999999999 55554
No 223
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.80 E-value=6.7e-09 Score=79.20 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=50.5
Q ss_pred CCCEEEEEEeCCC--ChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC
Q 018332 41 GGKTICLFFSANW--CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD 118 (358)
Q Consensus 41 ~gk~vlv~F~a~w--C~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 118 (358)
.|..++|.||++| ||+|+.+.|.|+++++++.+. +.++.+++|.+. .++.+|+|+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~~--------------------~la~~f~V~ 82 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADEQ--------------------ALAARFGVL 82 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCCH--------------------HHHHHcCCC
Confidence 4678889999997 999999999999999998765 667777777655 578888998
Q ss_pred CCCcc
Q 018332 119 AYPFT 123 (358)
Q Consensus 119 ~~P~~ 123 (358)
+.|+.
T Consensus 83 sIPTl 87 (111)
T cd02965 83 RTPAL 87 (111)
T ss_pred cCCEE
Confidence 88864
No 224
>PRK15000 peroxidase; Provisional
Probab=98.80 E-value=1.1e-08 Score=87.76 Aligned_cols=94 Identities=22% Similarity=0.387 Sum_probs=64.0
Q ss_pred ccCccc-ccCC--CCc-eec---ccC-CCCEEEEEEeC-CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh--h
Q 018332 22 SEGVEF-LLSR--QGK-VPL---SSC-GGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--N 90 (358)
Q Consensus 22 ~~~~~~-l~~~--~g~-v~l---~~~-~gk~vlv~F~a-~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~--~ 90 (358)
...++| +.+. +|+ +++ +++ +||+++|+||+ .||+.|...+|.|.++++++++.+ ++|+.|++|... .
T Consensus 6 ~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~~~~ 83 (200)
T PRK15000 6 RQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEFVHN 83 (200)
T ss_pred CcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHH
Confidence 344566 4543 344 444 444 79999999998 599999999999999999999887 999999999643 2
Q ss_pred HHHHHHhhC------CCcccccccceeeecccc
Q 018332 91 GFEEHFKSS------DGTLIEEDLIGLIEDYGA 117 (358)
Q Consensus 91 ~~~~~~~~~------~~~~~~~~~~~l~~~~gi 117 (358)
.+.+...+. ...++.+....+++.||+
T Consensus 84 ~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv 116 (200)
T PRK15000 84 AWRNTPVDKGGIGPVKYAMVADVKREIQKAYGI 116 (200)
T ss_pred HHHhhHHHhCCccccCceEEECCCcHHHHHcCC
Confidence 222222111 223445555566666665
No 225
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=1.1e-09 Score=103.43 Aligned_cols=64 Identities=23% Similarity=0.554 Sum_probs=57.3
Q ss_pred CEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCc
Q 018332 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPF 122 (358)
Q Consensus 43 k~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~ 122 (358)
|..+|+||++|||||+.|+|.|+++++.+....+-+.|.+|+|-.+++ ..+|++|+|..||+
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N------------------~~lCRef~V~~~Pt 119 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN------------------VKLCREFSVSGYPT 119 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh------------------hhhHhhcCCCCCce
Confidence 588999999999999999999999999999988888899999976665 48999999999996
Q ss_pred ch
Q 018332 123 TR 124 (358)
Q Consensus 123 ~~ 124 (358)
..
T Consensus 120 lr 121 (606)
T KOG1731|consen 120 LR 121 (606)
T ss_pred ee
Confidence 43
No 226
>PHA02125 thioredoxin-like protein
Probab=98.77 E-value=2.2e-08 Score=71.62 Aligned_cols=57 Identities=32% Similarity=0.605 Sum_probs=41.8
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
++.||++||++|+...|.|.++. +.++-|+.|. ..+++++|+|.++|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~----------~~~~~vd~~~-----------------------~~~l~~~~~v~~~P 48 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE----------YTYVDVDTDE-----------------------GVELTAKHHIRSLP 48 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh----------heEEeeeCCC-----------------------CHHHHHHcCCceeC
Confidence 68999999999999999886541 2233344333 36889999999999
Q ss_pred eEEEECCCCcEEec
Q 018332 254 ALVLIGPDGKTIST 267 (358)
Q Consensus 254 ~~~lid~~G~v~~~ 267 (358)
|++ +|+.+.+
T Consensus 49 T~~----~g~~~~~ 58 (75)
T PHA02125 49 TLV----NTSTLDR 58 (75)
T ss_pred eEE----CCEEEEE
Confidence 987 4655543
No 227
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.77 E-value=3.3e-08 Score=70.86 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=47.1
Q ss_pred EEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceee
Q 018332 175 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA 254 (358)
Q Consensus 175 v~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 254 (358)
|.||++||++|+...|.+.++.+++. ..+.+ +.+|. ...+.+|++.++|+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~----~~~~~--~~v~~------------------------~~~a~~~~v~~vPt 52 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELG----IDAEF--EKVTD------------------------MNEILEAGVTATPG 52 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcC----CCeEE--EEeCC------------------------HHHHHHcCCCcCCE
Confidence 78999999999999999999999886 34454 55552 12256799999999
Q ss_pred EEEECCCCcEEec
Q 018332 255 LVLIGPDGKTIST 267 (358)
Q Consensus 255 ~~lid~~G~v~~~ 267 (358)
+++ +|+++..
T Consensus 53 i~i---~G~~~~~ 62 (76)
T TIGR00412 53 VAV---DGELVIM 62 (76)
T ss_pred EEE---CCEEEEE
Confidence 998 8887733
No 228
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.75 E-value=1.6e-08 Score=76.31 Aligned_cols=62 Identities=26% Similarity=0.569 Sum_probs=49.2
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
++++++|.||++||++|+.+.|.|.++++.++. ...+.++.++++.+. .++++|+|..+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~--------------------~~~~~~~i~~~ 72 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDCTANN--------------------DLCSEYGVRGY 72 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeeccchH--------------------HHHHhCCCCCC
Confidence 456999999999999999999999999999851 122667777666533 57888899999
Q ss_pred Ccc
Q 018332 121 PFT 123 (358)
Q Consensus 121 P~~ 123 (358)
|+.
T Consensus 73 Pt~ 75 (101)
T cd02961 73 PTI 75 (101)
T ss_pred CEE
Confidence 964
No 229
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.74 E-value=7.1e-09 Score=90.28 Aligned_cols=79 Identities=23% Similarity=0.327 Sum_probs=61.8
Q ss_pred cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018332 171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 250 (358)
Q Consensus 171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 250 (358)
..++|.||||||++|+++.|.+.++--++++ .+.-|-.-.+|.+. ...++..|+|+
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkd---ig~PikVGKlDaT~---------------------f~aiAnefgiq 99 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKD---IGLPIKVGKLDATR---------------------FPAIANEFGIQ 99 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhh---cCCceeeccccccc---------------------chhhHhhhccC
Confidence 6899999999999999999999999888876 44444444556553 46899999999
Q ss_pred ceeeEEEECCCCcEEecCcchhh
Q 018332 251 GIPALVLIGPDGKTISTNGKEMI 273 (358)
Q Consensus 251 ~~P~~~lid~~G~v~~~~g~~~~ 273 (358)
++||+.++..+--+-+|+||...
T Consensus 100 GYPTIk~~kgd~a~dYRG~R~Kd 122 (468)
T KOG4277|consen 100 GYPTIKFFKGDHAIDYRGGREKD 122 (468)
T ss_pred CCceEEEecCCeeeecCCCccHH
Confidence 99999999444455567666533
No 230
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.74 E-value=3e-08 Score=75.57 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=55.6
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
++++++.|+++||++|..+.|.+.+++++++ .++.++.|+.|. ...+++.|++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~----~~v~f~~vd~~~-----------------------~~~~~~~~~i 64 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK----GKLLFVVVDADD-----------------------FGRHLEYFGL 64 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC----CeEEEEEEchHh-----------------------hHHHHHHcCC
Confidence 7899999999999999999999999999997 456666666654 3578999999
Q ss_pred C--ceeeEEEECC
Q 018332 250 K--GIPALVLIGP 260 (358)
Q Consensus 250 ~--~~P~~~lid~ 260 (358)
. ++|++++++.
T Consensus 65 ~~~~~P~~~~~~~ 77 (103)
T cd02982 65 KEEDLPVIAIINL 77 (103)
T ss_pred ChhhCCEEEEEec
Confidence 9 9999999966
No 231
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.73 E-value=6.1e-08 Score=71.61 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=58.2
Q ss_pred cccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018332 166 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 245 (358)
Q Consensus 166 ~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (358)
.++.+.+.+..|+++||++|+...+.+.++...+ .++.+..+..+.. .++++
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-----~~i~~~~vd~~~~-----------------------~e~a~ 59 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLN-----PNIEHEMIDGALF-----------------------QDEVE 59 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-----CCceEEEEEhHhC-----------------------HHHHH
Confidence 4567788899999999999999999999988766 3467777776643 57899
Q ss_pred HcCCCceeeEEEECCCCcEEec
Q 018332 246 IFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 246 ~~~v~~~P~~~lid~~G~v~~~ 267 (358)
+|+|.++|++++ +|+++..
T Consensus 60 ~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 60 ERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred HcCCccCCEEEE---CCEEEEe
Confidence 999999999975 6888776
No 232
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.73 E-value=3.7e-08 Score=76.45 Aligned_cols=58 Identities=26% Similarity=0.457 Sum_probs=45.9
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP 121 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P 121 (358)
++.++|+||++||++|+.+.|.++++++.+ +. ++++.++.|...+ ++++|++...|
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~~~~--------------------l~~~~~v~~vP 77 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDEDKE--------------------KAEKYGVERVP 77 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCcCHH--------------------HHHHcCCCcCC
Confidence 567899999999999999999999998875 22 7788888886553 56667777777
Q ss_pred cc
Q 018332 122 FT 123 (358)
Q Consensus 122 ~~ 123 (358)
+.
T Consensus 78 t~ 79 (113)
T cd02975 78 TT 79 (113)
T ss_pred EE
Confidence 53
No 233
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.73 E-value=2.1e-08 Score=86.82 Aligned_cols=96 Identities=16% Similarity=0.276 Sum_probs=67.9
Q ss_pred ccccCccc-ccCCCCceec-ccCCCCEEEE-EEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh--HHHH
Q 018332 20 LASEGVEF-LLSRQGKVPL-SSCGGKTICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEE 94 (358)
Q Consensus 20 l~~~~~~~-l~~~~g~v~l-~~~~gk~vlv-~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~--~~~~ 94 (358)
+....++| +.+.+|++++ +.++||+++| .|++.||+.|...++.|.++++++++.| ++++.||+|.... .+.+
T Consensus 9 iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~~ 86 (215)
T PRK13191 9 IGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWVM 86 (215)
T ss_pred CCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHh
Confidence 34455677 7778888656 4479997666 6679999999999999999999999887 8999999996533 3443
Q ss_pred HHhh-----CCCcccccccceeeecccc
Q 018332 95 HFKS-----SDGTLIEEDLIGLIEDYGA 117 (358)
Q Consensus 95 ~~~~-----~~~~~~~~~~~~l~~~~gi 117 (358)
+..+ ....++.+....+++.||+
T Consensus 87 ~~~~~~~~~i~fPllsD~~~~ia~~ygv 114 (215)
T PRK13191 87 WIEKNLKVEVPFPIIADPMGNVAKRLGM 114 (215)
T ss_pred hHHHhcCCCCceEEEECCchHHHHHcCC
Confidence 3322 1123444444555566654
No 234
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.72 E-value=5.5e-08 Score=74.98 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=45.7
Q ss_pred CCcEEEEEEec--cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018332 169 AGKTIGLYFGA--HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 246 (358)
Q Consensus 169 ~~k~vlv~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (358)
+.+.+||.|+| +||+ + .|.+.+|+.+|.. ....+.|.-|.++... ...+..|+++
T Consensus 17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~-aa~~v~lakVd~~d~~------------------~~~~~~L~~~ 73 (116)
T cd03007 17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSAS-ATDDLLVAEVGIKDYG------------------EKLNMELGER 73 (116)
T ss_pred cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHh-hcCceEEEEEeccccc------------------chhhHHHHHH
Confidence 45789999999 6666 3 3666666666643 1233445445554210 0114789999
Q ss_pred cCCC--ceeeEEEECCCC
Q 018332 247 FNIK--GIPALVLIGPDG 262 (358)
Q Consensus 247 ~~v~--~~P~~~lid~~G 262 (358)
|+|+ ++||+.+| ++|
T Consensus 74 y~I~~~gyPTl~lF-~~g 90 (116)
T cd03007 74 YKLDKESYPVIYLF-HGG 90 (116)
T ss_pred hCCCcCCCCEEEEE-eCC
Confidence 9999 99999999 445
No 235
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.72 E-value=2.3e-08 Score=88.42 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=67.2
Q ss_pred ccccCccc-ccC-CCC--c-eecccC-CCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh--h
Q 018332 20 LASEGVEF-LLS-RQG--K-VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--N 90 (358)
Q Consensus 20 l~~~~~~~-l~~-~~g--~-v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~--~ 90 (358)
+....++| +.+ .+| . ++++++ +||+++|.|| +.||++|...+|.|.++++++++.| ++|+.|++|... .
T Consensus 70 vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~h~ 147 (261)
T PTZ00137 70 VGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFSHK 147 (261)
T ss_pred CCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHH
Confidence 33445566 444 344 4 899998 8999999998 8999999999999999999999888 899999998632 2
Q ss_pred HHHHHHhh------CCCcccccccceeeecccc
Q 018332 91 GFEEHFKS------SDGTLIEEDLIGLIEDYGA 117 (358)
Q Consensus 91 ~~~~~~~~------~~~~~~~~~~~~l~~~~gi 117 (358)
.+.+...+ ....++.+....+++.||+
T Consensus 148 aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv 180 (261)
T PTZ00137 148 AWKELDVRQGGVSPLKFPLFSDISREVSKSFGL 180 (261)
T ss_pred HHHhhhhhhccccCcceEEEEcCChHHHHHcCC
Confidence 33332111 1123444445556666665
No 236
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.71 E-value=1.1e-08 Score=91.64 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=56.9
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeec
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIED 114 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 114 (358)
.+++++.|++++|+||++||++|+.++|.|.+++++++ ++|+.|++|.+... ..+.+ . ....++++
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~~-------~fp~~-~-~d~~la~~ 224 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPLP-------GFPNA-R-PDAGQAQQ 224 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCccc-------cCCcc-c-CCHHHHHH
Confidence 77888999999999999999999999999999999873 77999999865321 01111 1 11245677
Q ss_pred cccCCCCcc
Q 018332 115 YGADAYPFT 123 (358)
Q Consensus 115 ~gi~~~P~~ 123 (358)
+||.+.|+.
T Consensus 225 ~gV~~vPtl 233 (271)
T TIGR02740 225 LKIRTVPAV 233 (271)
T ss_pred cCCCcCCeE
Confidence 888888853
No 237
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.70 E-value=3.3e-08 Score=85.11 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=53.1
Q ss_pred Cccc-ccCCCCceecccCCC-CEE-EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 24 GVEF-LLSRQGKVPLSSCGG-KTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 24 ~~~~-l~~~~g~v~l~~~~g-k~v-lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
.++| +.+.+|.+++++++| |++ ++.|++.||+.|...++.|.++++++++.| ++++.|++|..
T Consensus 5 aP~F~~~~~~g~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~ 70 (203)
T cd03016 5 APNFEADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSV 70 (203)
T ss_pred CCCeEEecCCCcEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCH
Confidence 3456 666677799999988 655 557779999999999999999999999887 89999999964
No 238
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.70 E-value=6.4e-09 Score=80.11 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=44.4
Q ss_pred CCCEEEEEEeC--CCCh---hhhhhhHHHHHHHHHHhcCCCceEEEEEEecC---ChhHHHHHHhhCCCcccccccceee
Q 018332 41 GGKTICLFFSA--NWCR---PCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DENGFEEHFKSSDGTLIEEDLIGLI 112 (358)
Q Consensus 41 ~gk~vlv~F~a--~wC~---~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~---~~~~~~~~~~~~~~~~~~~~~~~l~ 112 (358)
+.+.+||.||| |||+ ||++++|++.+.+.. +.|..|+++. .++ .+||
T Consensus 17 ~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~-------v~lakVd~~d~~~~~~------------------~~L~ 71 (116)
T cd03007 17 KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD-------LLVAEVGIKDYGEKLN------------------MELG 71 (116)
T ss_pred cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-------eEEEEEecccccchhh------------------HHHH
Confidence 46899999999 9998 777777777664432 5566666642 222 3799
Q ss_pred eccccC--CCCcchHhH
Q 018332 113 EDYGAD--AYPFTRKRR 127 (358)
Q Consensus 113 ~~~gi~--~~P~~~~~~ 127 (358)
.+|+|+ +||+...+.
T Consensus 72 ~~y~I~~~gyPTl~lF~ 88 (116)
T cd03007 72 ERYKLDKESYPVIYLFH 88 (116)
T ss_pred HHhCCCcCCCCEEEEEe
Confidence 999999 999765444
No 239
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.68 E-value=4.1e-08 Score=84.28 Aligned_cols=58 Identities=28% Similarity=0.315 Sum_probs=52.2
Q ss_pred CCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018332 30 SRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (358)
Q Consensus 30 ~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~ 89 (358)
+.+|. +++++++||+++|+|| +.||++|...++.|.++++++.+.+ ++|+.|++|...
T Consensus 23 ~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~ 82 (199)
T PTZ00253 23 NGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEY 82 (199)
T ss_pred CCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHH
Confidence 45667 9999999999999999 5889999999999999999999887 999999998654
No 240
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.67 E-value=3.6e-08 Score=82.57 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=44.2
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP 121 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P 121 (358)
+++|+|.||++||++|+.+.|.|.++++++.. +.++.|+++.. .++.+|+|.+.|
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~d~~---------------------~l~~~f~v~~vP 137 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRASAT---------------------GASDEFDTDALP 137 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEeccch---------------------hhHHhCCCCCCC
Confidence 45999999999999999999999999998742 55655555532 356778888888
Q ss_pred cc
Q 018332 122 FT 123 (358)
Q Consensus 122 ~~ 123 (358)
+.
T Consensus 138 Tl 139 (175)
T cd02987 138 AL 139 (175)
T ss_pred EE
Confidence 53
No 241
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.66 E-value=9e-08 Score=83.75 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=63.3
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
...|+|.|||.||+.++.+.|.+.+.++++++. -.+-++|+-.+|.+. ...++.+|.|
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e-~P~~kvvwg~VDcd~---------------------e~~ia~ky~I 70 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE-FPEGKVVWGKVDCDK---------------------EDDIADKYHI 70 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh-CCCcceEEEEcccch---------------------hhHHhhhhcc
Confidence 468999999999999999999999999998863 233578888888876 5789999999
Q ss_pred CceeeEEEECCCCcEEec
Q 018332 250 KGIPALVLIGPDGKTIST 267 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~~~ 267 (358)
..+||+-++ ++|.+..+
T Consensus 71 ~KyPTlKvf-rnG~~~~r 87 (375)
T KOG0912|consen 71 NKYPTLKVF-RNGEMMKR 87 (375)
T ss_pred ccCceeeee-eccchhhh
Confidence 999999999 66666554
No 242
>PRK13189 peroxiredoxin; Provisional
Probab=98.64 E-value=7.3e-08 Score=83.96 Aligned_cols=67 Identities=25% Similarity=0.323 Sum_probs=54.7
Q ss_pred cccCccc-ccCCCCceeccc-CCCCEEEE-EEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018332 21 ASEGVEF-LLSRQGKVPLSS-CGGKTICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (358)
Q Consensus 21 ~~~~~~~-l~~~~g~v~l~~-~~gk~vlv-~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~ 89 (358)
....++| +.+..|.+++++ ++||+++| .|++.||+.|...++.|.++++++++.+ ++|+.||+|...
T Consensus 12 G~~aPdF~~~~~~g~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~ 81 (222)
T PRK13189 12 GDKFPEFEVKTTHGPIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVF 81 (222)
T ss_pred CCcCCCcEeEcCCCCEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHH
Confidence 3455677 677788877777 49996555 6669999999999999999999999877 899999999643
No 243
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.64 E-value=4.5e-08 Score=71.23 Aligned_cols=56 Identities=18% Similarity=0.292 Sum_probs=44.5
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcc
Q 018332 45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT 123 (358)
Q Consensus 45 vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~ 123 (358)
.+..||++||++|+.+.|.+++++++++.. +.++.|+++.+.+ ++++||+.++|+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~~~--------------------~~~~~~v~~vPt~ 57 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMENPQ--------------------KAMEYGIMAVPAI 57 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccCHH--------------------HHHHcCCccCCEE
Confidence 467899999999999999999999988643 7788888776553 4566777777754
No 244
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.63 E-value=8.2e-09 Score=59.47 Aligned_cols=29 Identities=34% Similarity=1.040 Sum_probs=14.3
Q ss_pred eeecCcCCCCcc-eEEEcCCCCCCCCcccc
Q 018332 323 YVCDCCKMRGRF-WAFSCDVCNYDLHPKCV 351 (358)
Q Consensus 323 ~~C~~C~e~g~~-~~~~~~~~~~~~~~~~~ 351 (358)
+.|+.|++++.+ |.|.|.+|||.||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 469999999988 99999999999999997
No 245
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.60 E-value=8.3e-08 Score=75.44 Aligned_cols=43 Identities=16% Similarity=0.415 Sum_probs=37.1
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
.|+.++|+|+++|||+|+++.|.|.+++++.+ ..+..+++|.+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~-----~~~y~vdvd~~ 64 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK-----APIYYIDSENN 64 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC-----CcEEEEECCCc
Confidence 47889999999999999999999999988721 56999999854
No 246
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=5.4e-07 Score=72.23 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=80.7
Q ss_pred Ccee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHHHHHh
Q 018332 153 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFDLN 224 (358)
Q Consensus 153 ~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~ 224 (358)
+|+. +.+|+.++++.++||++|+.--|+.|+.-..-...|+.|+++|+. .+++|++..++. ..+++..+
T Consensus 16 df~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~---~Gl~ILaFPCNQFg~QEp~~n~Ei~~f 92 (171)
T KOG1651|consen 16 DFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKD---QGLEILAFPCNQFGNQEPGSNEEILNF 92 (171)
T ss_pred eeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhh---CCeEEEEeccccccCcCCCCcHHHHHH
Confidence 4666 999999999999999999999999999998777899999999987 999999999853 23455566
Q ss_pred hhcCCcccccc------CchhHHHHHHHc----------CCCceeeEEEECCCCcEEec
Q 018332 225 HSIMPWLAIPY------EDRARQDLCRIF----------NIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 225 ~~~~~~~~~~~------~~~~~~~l~~~~----------~v~~~P~~~lid~~G~v~~~ 267 (358)
....+...+|. ..+....+.+.+ +|..==+-+|+|++|+++.|
T Consensus 93 ~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~R 151 (171)
T KOG1651|consen 93 VKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKR 151 (171)
T ss_pred HHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEe
Confidence 55332222232 112122222221 12222367999999999998
No 247
>PHA02125 thioredoxin-like protein
Probab=98.59 E-value=2.2e-08 Score=71.63 Aligned_cols=50 Identities=26% Similarity=0.540 Sum_probs=36.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcch
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFTR 124 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~~ 124 (358)
++.||++||++|+.+.|.|+++. +.+ +++|.++. .+++++|+|.++|+..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~--~~vd~~~~------------------~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTY--VDVDTDEG------------------VELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heE--EeeeCCCC------------------HHHHHHcCCceeCeEE
Confidence 78999999999999999986541 234 44443332 2578889999999753
No 248
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.8e-07 Score=74.56 Aligned_cols=118 Identities=17% Similarity=0.230 Sum_probs=86.7
Q ss_pred chhhHhhhhccCCcee-cCCCceeeecccCCc-EEEEEEecc-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018332 141 GKLEQLLAIEGRDYVL-SRDHRKITVSELAGK-TIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD 217 (358)
Q Consensus 141 ~~l~~~~~~~~p~f~l-~~~g~~~~l~~~~~k-~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~ 217 (358)
..+.--+|+.+|||++ +.+|..++|..+.++ +|+++||.. ..|-|.+..-.+..-|++++. .+.+|++++.|..
T Consensus 59 ds~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk---a~aeV~GlS~D~s 135 (211)
T KOG0855|consen 59 DSLKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK---AGAEVIGLSGDDS 135 (211)
T ss_pred cceeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhh---cCceEEeeccCch
Confidence 3334456899999999 999999999999885 888888743 445599999899999999986 7899999999865
Q ss_pred HHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee-------eEEEECCCCc
Q 018332 218 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP-------ALVLIGPDGK 263 (358)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P-------~~~lid~~G~ 263 (358)
. ..+.|..+ ..+.+....|+.+++.+.+|+...| ..++|+++|.
T Consensus 136 ~-sqKaF~sK-qnlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~ 186 (211)
T KOG0855|consen 136 A-SQKAFASK-QNLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV 186 (211)
T ss_pred H-HHHHhhhh-ccCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence 3 22222222 1133334678889999999987644 5677766653
No 249
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.57 E-value=3.8e-08 Score=76.22 Aligned_cols=83 Identities=27% Similarity=0.493 Sum_probs=48.3
Q ss_pred CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC-cccccccceeeeccccC
Q 018332 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG-TLIEEDLIGLIEDYGAD 118 (358)
Q Consensus 40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~ 118 (358)
.+||++++.|+.|||++|+.+.+.+.+..+-.......+.++.++++.+......... .++ .-+.....++...|||.
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLD-FDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHS-HTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccc-cccchhhhHHHHHHHHHcCCC
Confidence 4689999999999999999999999875553222212378888888765532222111 111 11111123567777777
Q ss_pred CCCcc
Q 018332 119 AYPFT 123 (358)
Q Consensus 119 ~~P~~ 123 (358)
++|+.
T Consensus 82 gtPt~ 86 (112)
T PF13098_consen 82 GTPTI 86 (112)
T ss_dssp SSSEE
T ss_pred ccCEE
Confidence 77753
No 250
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=98.55 E-value=1.6e-07 Score=77.18 Aligned_cols=92 Identities=21% Similarity=0.266 Sum_probs=69.5
Q ss_pred Cccc-ccCCC---Cc-eeccc-CCCCEEEEEEe-CCCChhhhhh-hHHHHHHHHHHhcCCCce-EEEEEEecCChhHHHH
Q 018332 24 GVEF-LLSRQ---GK-VPLSS-CGGKTICLFFS-ANWCRPCKTF-TPQLVQLYDTLRTRGTEL-EVIFISFDHDENGFEE 94 (358)
Q Consensus 24 ~~~~-l~~~~---g~-v~l~~-~~gk~vlv~F~-a~wC~~C~~~-~p~~~~~~~~l~~~~~~~-~iv~i~~d~~~~~~~~ 94 (358)
.++| +.+.+ |. ++|++ ++||+++|+|| +.||+.|... ++.|.+.++++.+.| . +|+.|+.|... +.++
T Consensus 5 aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~-~~~~ 81 (155)
T cd03013 5 LPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPF-VMKA 81 (155)
T ss_pred CCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHH-HHHH
Confidence 3555 66664 88 99999 58988888888 8999999998 999999999999887 7 59999998543 3444
Q ss_pred HHhhC----CCcccccccceeeeccccC
Q 018332 95 HFKSS----DGTLIEEDLIGLIEDYGAD 118 (358)
Q Consensus 95 ~~~~~----~~~~~~~~~~~l~~~~gi~ 118 (358)
+.... ...++.+...++++.||+.
T Consensus 82 ~~~~~~~~~~f~lLsD~~~~~~~~ygv~ 109 (155)
T cd03013 82 WGKALGAKDKIRFLADGNGEFTKALGLT 109 (155)
T ss_pred HHHhhCCCCcEEEEECCCHHHHHHcCCC
Confidence 44432 2356666667777777763
No 251
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.55 E-value=4.8e-07 Score=78.27 Aligned_cols=85 Identities=25% Similarity=0.350 Sum_probs=67.2
Q ss_pred ecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018332 165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 244 (358)
Q Consensus 165 l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (358)
+..+.++.-|++|+.+.|++|..+.|.|..+.++|. +.|+.|++|.... ..+|.... +..++
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg------~~v~~vs~DG~~~-----------~~fp~~~~-~~g~~ 176 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG------FSVIPVSLDGRPI-----------PSFPNPRP-DPGQA 176 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC------CEEEEEecCCCCC-----------cCCCCCCC-CHHHH
Confidence 455667899999999999999999999999999986 7899999996421 12222211 46788
Q ss_pred HHcCCCceeeEEEECCCCcEEec
Q 018332 245 RIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 245 ~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
++++|..+|+++|+++++.....
T Consensus 177 ~~l~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 177 KRLGVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred HHcCCCcCCEEEEEECCCCeEEE
Confidence 99999999999999998854444
No 252
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.50 E-value=2.3e-07 Score=68.45 Aligned_cols=57 Identities=30% Similarity=0.669 Sum_probs=46.1
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP 121 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P 121 (358)
+++++|.||++||++|+.+.|.+.++++. . .++.++.++++.+. .++.+|++.++|
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~--~~~~~~~i~~~~~~--------------------~~~~~~~v~~~P 65 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--Y--PKVKFVKVDVDENP--------------------ELAEEYGVRSIP 65 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH--C--CCceEEEEECCCCh--------------------hHHHhcCccccc
Confidence 48999999999999999999999999887 2 23778888877644 456777888888
Q ss_pred c
Q 018332 122 F 122 (358)
Q Consensus 122 ~ 122 (358)
+
T Consensus 66 ~ 66 (93)
T cd02947 66 T 66 (93)
T ss_pred E
Confidence 5
No 253
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.48 E-value=2e-07 Score=73.27 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=36.1
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecC
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDH 87 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~ 87 (358)
+..+..++|+|+|+|+|+||++|+.|.+.. .++.+.++++ +.+|.++.+.
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~---fv~VkvD~~~ 60 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN---FVPIKVDREE 60 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC---EEEEEEeCCc
Confidence 555666899999999999999999998743 3466666554 5555555443
No 254
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.48 E-value=1.6e-07 Score=71.48 Aligned_cols=58 Identities=14% Similarity=0.281 Sum_probs=47.3
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC--C
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD--A 119 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~--~ 119 (358)
|+++++.|+++||++|+.+.|.+.++++++++. +.++.|+++... .+++.||+. .
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~~--------------------~~~~~~~i~~~~ 68 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDFG--------------------RHLEYFGLKEED 68 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhhH--------------------HHHHHcCCChhh
Confidence 799999999999999999999999999999854 666666666433 456777777 7
Q ss_pred CCc
Q 018332 120 YPF 122 (358)
Q Consensus 120 ~P~ 122 (358)
+|+
T Consensus 69 ~P~ 71 (103)
T cd02982 69 LPV 71 (103)
T ss_pred CCE
Confidence 775
No 255
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.47 E-value=7.6e-07 Score=74.65 Aligned_cols=66 Identities=33% Similarity=0.568 Sum_probs=58.4
Q ss_pred cCccc-ccCCCCc-eecccCCCCEEEEEEeCCCChh-hhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
...+| |++.+|+ +++++++||+++|.|....|+. |...+..+.++.+++.+.+.++++++|++|..
T Consensus 31 ~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 31 IVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp SSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred cCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 34566 9999999 9999999999999999999986 99999999999999988777899999999964
No 256
>smart00594 UAS UAS domain.
Probab=98.47 E-value=1.4e-06 Score=68.65 Aligned_cols=70 Identities=16% Similarity=0.335 Sum_probs=50.1
Q ss_pred cCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018332 168 LAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 244 (358)
Q Consensus 168 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (358)
-.+|.++|+|+++||++|..+.... .++.+.+. .++.++.++++... ...++
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~----~~fv~~~~dv~~~e---------------------g~~l~ 79 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR----ENFIFWQVDVDTSE---------------------GQRVS 79 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH----cCEEEEEecCCChh---------------------HHHHH
Confidence 3579999999999999999987643 22333333 33333334433322 46899
Q ss_pred HHcCCCceeeEEEECCCC
Q 018332 245 RIFNIKGIPALVLIGPDG 262 (358)
Q Consensus 245 ~~~~v~~~P~~~lid~~G 262 (358)
..|++.++|++++++++|
T Consensus 80 ~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 80 QFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HhcCcCCCCEEEEEecCC
Confidence 999999999999999997
No 257
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.44 E-value=2.7e-07 Score=78.37 Aligned_cols=41 Identities=10% Similarity=0.149 Sum_probs=34.0
Q ss_pred CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
+++|+|.||++||++|+.+.|.|.+++.++.. +.++.|+.+
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad 142 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIIST 142 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhH
Confidence 46999999999999999999999999998843 455555544
No 258
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.43 E-value=1.5e-06 Score=76.46 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=77.9
Q ss_pred ecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018332 165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 244 (358)
Q Consensus 165 l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (358)
+..+.++.-|++||...|++|.++.|.|..+.++|+ +.|+.|++|... ...+|... .+..++
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg------i~v~~VS~DG~~-----------~p~fp~~~-~d~gqa 206 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG------ISVIPISVDGTL-----------IPGLPNSR-SDSGQA 206 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC------CeEEEEecCCCC-----------CCCCCCcc-CChHHH
Confidence 445667899999999999999999999999999986 789999999752 01222221 146778
Q ss_pred HHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCC
Q 018332 245 RIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDA 301 (358)
Q Consensus 245 ~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~ 301 (358)
+++|+..+|+++|++++.+....- .+|.+. .++|.+.+...+..
T Consensus 207 ~~l~v~~~Pal~Lv~~~t~~~~pv------~~G~iS-------~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 207 QHLGVKYFPALYLVNPKSQKMSPL------AYGFIS-------QDELKERILNVLTQ 250 (256)
T ss_pred HhcCCccCceEEEEECCCCcEEEE------eeccCC-------HHHHHHHHHHHHhc
Confidence 999999999999999986654443 256555 45555555544443
No 259
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.1e-06 Score=68.25 Aligned_cols=118 Identities=19% Similarity=0.329 Sum_probs=94.5
Q ss_pred hhhccCCceecCCCceeeecccCCcEEEEEEe--ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC--CHHHHH
Q 018332 147 LAIEGRDYVLSRDHRKITVSELAGKTIGLYFG--AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DHKEFD 222 (358)
Q Consensus 147 ~~~~~p~f~l~~~g~~~~l~~~~~k~vlv~F~--a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~--~~~~~~ 222 (358)
+|..+|+|..+.+-.++.+.++.|..+.|.|. +...|.|..++..+.++.-+|.. .+++.+++++|. ++..|.
T Consensus 8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~K---RnvKlialS~d~vesH~~Wi 84 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDK---RNVKLIALSVDDVESHKDWI 84 (224)
T ss_pred ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhh---cCceEEEeehhhHHHHHHHH
Confidence 68899999997776779999999987777776 56788899999999999999987 899999999986 445666
Q ss_pred HhhhcC----C-ccccccCchhHHHHHHHcCCC------------ceeeEEEECCCCcEEec
Q 018332 223 LNHSIM----P-WLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST 267 (358)
Q Consensus 223 ~~~~~~----~-~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 267 (358)
+-++++ + -..+|...|.+++++-.|+.- ....+++||++.+++..
T Consensus 85 ~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs 146 (224)
T KOG0854|consen 85 KDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLS 146 (224)
T ss_pred HHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEE
Confidence 555322 1 256777888899999888762 35679999999999866
No 260
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.42 E-value=3.1e-07 Score=65.80 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=29.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
-|.||++||++|+.+.|.+.++++++... +++ +++|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~--~~v~ 37 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID---AEF--EKVT 37 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC---eEE--EEeC
Confidence 37899999999999999999999987543 444 5555
No 261
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.41 E-value=5.1e-07 Score=71.48 Aligned_cols=75 Identities=19% Similarity=0.368 Sum_probs=47.3
Q ss_pred ecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018332 165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 244 (358)
Q Consensus 165 l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (358)
+..+..+..++.|..+|||.|....|.|.++++.. .++++-.+..|.+. ++.
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-----p~i~~~~i~rd~~~-----------------------el~ 87 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEAN-----PNIEVRIILRDENK-----------------------ELM 87 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH------TTEEEEEE-HHHHH-----------------------HHT
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-----CCCeEEEEEecCCh-----------------------hHH
Confidence 33445667888999999999999999999998875 34667667666432 333
Q ss_pred HH---cCCCceeeEEEECCCCcEEec
Q 018332 245 RI---FNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 245 ~~---~~v~~~P~~~lid~~G~v~~~ 267 (358)
.+ .|...+|+++++|.+|+.+.+
T Consensus 88 ~~~lt~g~~~IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 88 DQYLTNGGRSIPTFIFLDKDGKELGR 113 (129)
T ss_dssp TTTTT-SS--SSEEEEE-TT--EEEE
T ss_pred HHHHhCCCeecCEEEEEcCCCCEeEE
Confidence 33 477899999999999999988
No 262
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.40 E-value=3.9e-07 Score=63.51 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=41.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcc
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT 123 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~ 123 (358)
++.|+++||++|+.+.|.+.++++.. .++++..++++.++ +++++||+.+.|+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~~--------------------~l~~~~~i~~vPti 56 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEFP--------------------DLADEYGVMSVPAI 56 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccCH--------------------hHHHHcCCcccCEE
Confidence 67899999999999999999886642 23777778777554 45778888888863
No 263
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=4.6e-06 Score=65.86 Aligned_cols=116 Identities=15% Similarity=0.155 Sum_probs=90.8
Q ss_pred hhhccCCcee-cCCCceeeecccCCcE-EEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018332 147 LAIEGRDYVL-SRDHRKITVSELAGKT-IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 224 (358)
Q Consensus 147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~-vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 224 (358)
+|.++|+|++ +.+.+.+++.++.||. ++..|-+-..|.|......+++.+.++ .+..|+.||+| -+-+..+|
T Consensus 20 vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~-----~~~~Vl~IS~D-LPFAq~Rf 93 (158)
T COG2077 20 VGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKL-----GNTVVLCISMD-LPFAQKRF 93 (158)
T ss_pred cCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhcc-----CCcEEEEEeCC-ChhHHhhh
Confidence 5899999999 8888899999999975 555666778888999999999988887 44788999998 44566677
Q ss_pred hhcCCccccccCch-hHHHHHHHcCCC--ce-------eeEEEECCCCcEEecC
Q 018332 225 HSIMPWLAIPYEDR-ARQDLCRIFNIK--GI-------PALVLIGPDGKTISTN 268 (358)
Q Consensus 225 ~~~~~~~~~~~~~~-~~~~l~~~~~v~--~~-------P~~~lid~~G~v~~~~ 268 (358)
....+..++...++ ....+.+.||+. .. .+++++|.+|+|++..
T Consensus 94 C~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~e 147 (158)
T COG2077 94 CGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSE 147 (158)
T ss_pred hhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEE
Confidence 77666655554444 456788999973 33 4789999999999884
No 264
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.38 E-value=2.1e-06 Score=75.19 Aligned_cols=106 Identities=17% Similarity=0.215 Sum_probs=76.4
Q ss_pred ecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018332 165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 244 (358)
Q Consensus 165 l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (358)
+..+.+++-|++||.+.|++|.++.|.|+.+.++|+ +.|+.||+|... ...+|... .+...+
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg------~~v~~VS~DG~~-----------~p~fp~~~-~d~gqa 199 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG------LSVIPVSVDGVI-----------NPLLPDSR-TDQGQA 199 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC------CeEEEEecCCCC-----------CCCCCCCc-cChhHH
Confidence 455667899999999999999999999999999986 689999999742 11233221 134566
Q ss_pred HHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCC
Q 018332 245 RIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDA 301 (358)
Q Consensus 245 ~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~ 301 (358)
++++|..+|+++|++++.+-...- .+|... ..+|.+.+...+..
T Consensus 200 ~~l~v~~~PAl~Lv~~~t~~~~pv------~~G~iS-------~deL~~Ri~~v~t~ 243 (248)
T PRK13703 200 QRLGVKYFPALMLVDPKSGSVRPL------SYGFIT-------QDDLAKRFLNVSTD 243 (248)
T ss_pred HhcCCcccceEEEEECCCCcEEEE------eeccCC-------HHHHHHHHHHHHhc
Confidence 899999999999999986544332 256555 45565555544443
No 265
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.36 E-value=6.4e-07 Score=65.21 Aligned_cols=65 Identities=32% Similarity=0.744 Sum_probs=43.1
Q ss_pred cCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018332 168 LAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 244 (358)
Q Consensus 168 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (358)
-.+|+++|+|++.||++|+.+...+ .++.+.+. .++..+.|..+... ...
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~----~~fv~v~vd~~~~~----------------------~~~- 67 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN----KNFVLVKVDVDDED----------------------PNA- 67 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH----HCSEEEEEETTTHH----------------------HHH-
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH----CCEEEEEEEcCCCC----------------------hhH-
Confidence 3589999999999999999998766 33333344 45556666654332 111
Q ss_pred HHcCCCceeeEEEECC
Q 018332 245 RIFNIKGIPALVLIGP 260 (358)
Q Consensus 245 ~~~~v~~~P~~~lid~ 260 (358)
.+...++|+++++||
T Consensus 68 -~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 68 -QFDRQGYPTFFFLDP 82 (82)
T ss_dssp -HHHHCSSSEEEEEET
T ss_pred -HhCCccCCEEEEeCC
Confidence 111166999999975
No 266
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.32 E-value=6.1e-07 Score=88.99 Aligned_cols=69 Identities=20% Similarity=0.382 Sum_probs=49.8
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccccccee
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGL 111 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l 111 (358)
+..+..+||+|+|+|||+||++|+.+.|.. .++.+.+++ +.++.++++.+.+. ..++
T Consensus 467 l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~----~~~v~vDvt~~~~~----------------~~~l 526 (571)
T PRK00293 467 LAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD----TVLLQADVTANNAE----------------DVAL 526 (571)
T ss_pred HHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC----CEEEEEECCCCChh----------------hHHH
Confidence 333445799999999999999999999875 567676642 66777777643211 1356
Q ss_pred eeccccCCCCcc
Q 018332 112 IEDYGADAYPFT 123 (358)
Q Consensus 112 ~~~~gi~~~P~~ 123 (358)
+++|++.++|+.
T Consensus 527 ~~~~~v~g~Pt~ 538 (571)
T PRK00293 527 LKHYNVLGLPTI 538 (571)
T ss_pred HHHcCCCCCCEE
Confidence 788899998864
No 267
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.31 E-value=1.8e-05 Score=78.83 Aligned_cols=177 Identities=12% Similarity=0.068 Sum_probs=104.7
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccc--ccccee-eec
Q 018332 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIE--EDLIGL-IED 114 (358)
Q Consensus 38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~--~~~~~l-~~~ 114 (358)
+++++++.++.|+.+.|..|..+...++++++ +.++ +++...+.+.+.....++.....+.+.. .++... ++-
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~---i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f 437 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEK---LNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKF 437 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCc---EEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEE
Confidence 45678889999999999999998888888774 4444 7777777665555444444433332211 111111 122
Q ss_pred cccCCCCcchHhHHHHHhhhhhhhccchhhHhhhhccCCceecCCCce-eeecccCCcEEEEEEeccCCcccHhhHHHHH
Q 018332 115 YGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRK-ITVSELAGKTIGLYFGAHWCPPCRSFTSQLI 193 (358)
Q Consensus 115 ~gi~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~-~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~ 193 (358)
+ +.|...++..-+.++.........+ +.+. -.+..+.++..+-.|.+++|++|......++
T Consensus 438 ~---g~P~G~Ef~s~i~~i~~~~~~~~~l---------------~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~ 499 (555)
T TIGR03143 438 H---GVPSGHELNSFILALYNAAGPGQPL---------------GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQ 499 (555)
T ss_pred E---ecCccHhHHHHHHHHHHhcCCCCCC---------------CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHH
Confidence 2 3355554443333322211111111 1110 1223444555566788999999998888888
Q ss_pred HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018332 194 EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 194 ~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
++..+.. ++..-.|.... ..+++++|+|.++|++++ ||+++..
T Consensus 500 ~~~~~~~-----~i~~~~i~~~~-----------------------~~~~~~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 500 RIASLNP-----NVEAEMIDVSH-----------------------FPDLKDEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred HHHHhCC-----CceEEEEECcc-----------------------cHHHHHhCCceecCEEEE---CCEEEEe
Confidence 7777653 45554454443 368899999999999987 5666654
No 268
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.24 E-value=5.7e-07 Score=51.62 Aligned_cols=29 Identities=28% Similarity=0.890 Sum_probs=27.2
Q ss_pred eeecCcCCCCcce-EEEcCCCCCCCCcccc
Q 018332 323 YVCDCCKMRGRFW-AFSCDVCNYDLHPKCV 351 (358)
Q Consensus 323 ~~C~~C~e~g~~~-~~~~~~~~~~~~~~~~ 351 (358)
+.|+.|.+...+. .|+|++|+|.||++||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 5799999999999 9999999999999997
No 269
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.21 E-value=9.8e-06 Score=61.69 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=54.6
Q ss_pred Ccee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC
Q 018332 153 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR 216 (358)
Q Consensus 153 ~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~ 216 (358)
+|.+ +.+|+.++++.++||++||.-.|+.|+.-. ....|++|+++|++ .+++|+++.++.
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~---~gl~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD---KGLEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG---GTEEEEEEEBST
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhc---CCeEEEeeehHH
Confidence 3566 899999999999999999999999999988 77899999999987 889999999864
No 270
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.18 E-value=3.2e-06 Score=72.75 Aligned_cols=65 Identities=31% Similarity=0.612 Sum_probs=59.7
Q ss_pred cc-ccCCCCc-eecccCCCCEEEEEEeCCCChh-hhhhhHHHHHHHHHHh-cCCCceEEEEEEecCChh
Q 018332 26 EF-LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLR-TRGTELEVIFISFDHDEN 90 (358)
Q Consensus 26 ~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~~~~~~~~l~-~~~~~~~iv~i~~d~~~~ 90 (358)
+| |++.+|+ +++..++||+++|+|.-+.||. |......+.++.+++. ..+.++++++|++|.+.+
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerD 117 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERD 117 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCC
Confidence 56 9999999 9999999999999999999997 9999999999999998 777789999999997544
No 271
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=2e-06 Score=81.73 Aligned_cols=69 Identities=28% Similarity=0.556 Sum_probs=59.1
Q ss_pred cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018332 171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 250 (358)
Q Consensus 171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 250 (358)
+..+|.||++|||+|+.+.|.++++++.... +..-+.|.+|++-.+. +..+++.|+|+
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~-W~~vv~vaaVdCA~~~---------------------N~~lCRef~V~ 115 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEK-WRPVVRVAAVDCADEE---------------------NVKLCREFSVS 115 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhc-ccceeEEEEeeccchh---------------------hhhhHhhcCCC
Confidence 5788999999999999999999999999875 6566677777765443 68999999999
Q ss_pred ceeeEEEECCC
Q 018332 251 GIPALVLIGPD 261 (358)
Q Consensus 251 ~~P~~~lid~~ 261 (358)
++|++..+.++
T Consensus 116 ~~Ptlryf~~~ 126 (606)
T KOG1731|consen 116 GYPTLRYFPPD 126 (606)
T ss_pred CCceeeecCCc
Confidence 99999999766
No 272
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.14 E-value=1.3e-05 Score=54.18 Aligned_cols=63 Identities=29% Similarity=0.590 Sum_probs=48.8
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
++.||+.||++|....+.+.++ ++.. .++.++.++++..... ......+++..+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~P 55 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLN---KGVKFEAVDVDEDPAL--------------------EKELKRYGVGGVP 55 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhC---CCcEEEEEEcCCChHH--------------------hhHHHhCCCcccc
Confidence 4789999999999999999988 3332 7889999998875411 1113578999999
Q ss_pred eEEEECCC
Q 018332 254 ALVLIGPD 261 (358)
Q Consensus 254 ~~~lid~~ 261 (358)
++++++++
T Consensus 56 ~~~~~~~~ 63 (69)
T cd01659 56 TLVVFGPG 63 (69)
T ss_pred EEEEEeCC
Confidence 99999766
No 273
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.14 E-value=8.6e-06 Score=62.55 Aligned_cols=68 Identities=41% Similarity=0.703 Sum_probs=53.0
Q ss_pred ecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018332 165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 244 (358)
Q Consensus 165 l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (358)
.....++++++.||++||++|+.+.|.+.++.+++. ..+.++.+..... ...+.
T Consensus 27 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~i~~~~~----------------------~~~~~ 80 (127)
T COG0526 27 LSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYG----GDVEVVAVNVDDE----------------------NPDLA 80 (127)
T ss_pred hhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhc----CCcEEEEEECCCC----------------------ChHHH
Confidence 333448899999999999999999999999999986 3567777777511 25666
Q ss_pred HHcC--CCceeeEEEE
Q 018332 245 RIFN--IKGIPALVLI 258 (358)
Q Consensus 245 ~~~~--v~~~P~~~li 258 (358)
..|+ +..+|+++++
T Consensus 81 ~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 81 AEFGVAVRSIPTLLLF 96 (127)
T ss_pred HHHhhhhccCCeEEEE
Confidence 7777 8888988766
No 274
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.13 E-value=3e-06 Score=62.58 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=50.5
Q ss_pred cccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccc
Q 018332 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYG 116 (358)
Q Consensus 37 l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 116 (358)
+.++++++-+..|+++||++|+...+.+.++++++. ++++..++.+... +++.+||
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~~--------------------e~a~~~~ 62 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALFQ--------------------DEVEERG 62 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhCH--------------------HHHHHcC
Confidence 346778889999999999999999999988887643 2778888877554 4678889
Q ss_pred cCCCCcc
Q 018332 117 ADAYPFT 123 (358)
Q Consensus 117 i~~~P~~ 123 (358)
|.+.|+.
T Consensus 63 V~~vPt~ 69 (89)
T cd03026 63 IMSVPAI 69 (89)
T ss_pred CccCCEE
Confidence 9888865
No 275
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.09 E-value=5e-06 Score=60.47 Aligned_cols=49 Identities=22% Similarity=0.586 Sum_probs=35.8
Q ss_pred ecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecC
Q 018332 36 PLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDH 87 (358)
Q Consensus 36 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~ 87 (358)
..+..+||+++|+|+++||++|+.+...+ .++.+.+.++ +..+.++.+.
T Consensus 11 ~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~~ 62 (82)
T PF13899_consen 11 AEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVDD 62 (82)
T ss_dssp HHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETTT
T ss_pred HHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcCC
Confidence 34445799999999999999999999887 4455545554 5555555543
No 276
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.1e-05 Score=64.60 Aligned_cols=99 Identities=25% Similarity=0.349 Sum_probs=75.3
Q ss_pred cCccc-ccCCCCc-eecccCCCC-EEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018332 23 EGVEF-LLSRQGK-VPLSSCGGK-TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS 98 (358)
Q Consensus 23 ~~~~~-l~~~~g~-v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~ 98 (358)
.-+|+ |.+.+|. ++|.++.|+ +|+++|| +..-|-|.+..--|..-|++++..+ .+++.++.|.. .+-++|...
T Consensus 68 ~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s-~sqKaF~sK 144 (211)
T KOG0855|consen 68 AIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDS-ASQKAFASK 144 (211)
T ss_pred cCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCch-HHHHHhhhh
Confidence 33466 9999999 999999765 8888999 5566779999999999999999988 88999999854 333444444
Q ss_pred C-CC-cccccccceeeeccccCCCCcch
Q 018332 99 S-DG-TLIEEDLIGLIEDYGADAYPFTR 124 (358)
Q Consensus 99 ~-~~-~~~~~~~~~l~~~~gi~~~P~~~ 124 (358)
. .+ .++.+...+++...|+..-|+.+
T Consensus 145 qnlPYhLLSDpk~e~ik~lGa~k~p~gg 172 (211)
T KOG0855|consen 145 QNLPYHLLSDPKNEVIKDLGAPKDPFGG 172 (211)
T ss_pred ccCCeeeecCcchhHHHHhCCCCCCCCC
Confidence 2 23 55677777888888887777543
No 277
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.04 E-value=1.9e-05 Score=67.90 Aligned_cols=117 Identities=16% Similarity=0.288 Sum_probs=80.5
Q ss_pred HhhhhccCCcee-cCCCce-eeecccC--CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC---
Q 018332 145 QLLAIEGRDYVL-SRDHRK-ITVSELA--GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--- 217 (358)
Q Consensus 145 ~~~~~~~p~f~l-~~~g~~-~~l~~~~--~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~--- 217 (358)
..+|..+||..+ +.+|+. .++.++. ++|++|+|.+-.||+=+.-+..++++.++|. +-.+++.|.+.+-
T Consensus 73 a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~----d~adFl~VYI~EAHps 148 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFS----DVADFLIVYIEEAHPS 148 (237)
T ss_pred eeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhh----hhhheehhhHhhhCcC
Confidence 346889999998 889988 8888885 5999999999999999999999999999998 3344555544210
Q ss_pred --------------H----H--HHHHhhhcCCccccccCch-hHHHHHHHcCCCcee-eEEEECCCCcEEecCc
Q 018332 218 --------------H----K--EFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIP-ALVLIGPDGKTISTNG 269 (358)
Q Consensus 218 --------------~----~--~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~v~~~P-~~~lid~~G~v~~~~g 269 (358)
+ + ...+.+.... ...|+..| -++...+.||. +| .+++| .+|+|++.+|
T Consensus 149 DgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA--~PeRlyIi-~~gkv~Y~Gg 218 (237)
T PF00837_consen 149 DGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGA--LPERLYII-QDGKVVYKGG 218 (237)
T ss_pred CCccCCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCC--CcceEEEE-ECCEEEEeCC
Confidence 0 1 1111122111 34454333 45566777765 45 35666 7999999976
No 278
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.97 E-value=3.1e-05 Score=63.21 Aligned_cols=87 Identities=24% Similarity=0.390 Sum_probs=46.0
Q ss_pred eeeecccCCcEEEEEEeccCCcccHhhHHH-H--HHHHHHhhcccCCceEEEEEeCCCCH-HHHHHhhhcCCccccccCc
Q 018332 162 KITVSELAGKTIGLYFGAHWCPPCRSFTSQ-L--IEVYNELKTTANHCFEVVLVSTDRDH-KEFDLNHSIMPWLAIPYED 237 (358)
Q Consensus 162 ~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~~vv~v~~d~~~-~~~~~~~~~~~~~~~~~~~ 237 (358)
.+..+.-.+|+++|.++.+||+.|+.+... + .++++-+.+ .+|.|.+|.+. .++...+.
T Consensus 29 a~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~------~FI~VkvDree~Pdid~~y~----------- 91 (163)
T PF03190_consen 29 ALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR------NFIPVKVDREERPDIDKIYM----------- 91 (163)
T ss_dssp HHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH------H-EEEEEETTT-HHHHHHHH-----------
T ss_pred HHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC------CEEEEEeccccCccHHHHHH-----------
Confidence 344445568999999999999999988742 2 233333432 36777777654 11111111
Q ss_pred hhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018332 238 RARQDLCRIFNIKGIPALVLIGPDGKTISTN 268 (358)
Q Consensus 238 ~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 268 (358)
.......|..|+|+.++++|+|+.++..
T Consensus 92 ---~~~~~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 92 ---NAVQAMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp ---HHHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred ---HHHHHhcCCCCCCceEEECCCCCeeeee
Confidence 0111122788999999999999998763
No 279
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.95 E-value=1.2e-05 Score=63.32 Aligned_cols=47 Identities=6% Similarity=0.169 Sum_probs=34.3
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhHHHH---HHHHHHhcCCCceEEEEEEec
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLV---QLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~---~~~~~l~~~~~~~~iv~i~~d 86 (358)
+..+..+||+|+|+|++.||++|+.+...+. ++.+.++++ +|.|+++
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~-----Fv~V~l~ 65 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQED-----FIMLNLV 65 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhC-----eEEEEEE
Confidence 5556678999999999999999999998763 345545443 4555554
No 280
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00012 Score=58.10 Aligned_cols=88 Identities=23% Similarity=0.399 Sum_probs=60.1
Q ss_pred ccCCcEEEEEEeccCCcccHhhHHHHH---HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCcccccc--CchhHH
Q 018332 167 ELAGKTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY--EDRARQ 241 (358)
Q Consensus 167 ~~~~k~vlv~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~ 241 (358)
...+|+.++.|-++.|++|.++...+. ++.+-+. ..+.++.+.+..+... . +.... ..-...
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk----~hf~~~~l~i~~skpv--~-------f~~g~kee~~s~~ 105 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK----EHFSAYYLNISYSKPV--L-------FKVGDKEEKMSTE 105 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh----hCeEEEEEEeccCcce--E-------eecCceeeeecHH
Confidence 346799999999999999998876653 3333343 5667777766433200 0 00000 011256
Q ss_pred HHHHHcCCCceeeEEEECCCCcEEec
Q 018332 242 DLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 242 ~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
++++.|+|+++|+++++|.+|+.+..
T Consensus 106 ELa~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 106 ELAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred HHHHHhccccCceEEEEcCCCCEEEe
Confidence 99999999999999999999998765
No 281
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.94 E-value=3e-05 Score=59.45 Aligned_cols=52 Identities=31% Similarity=0.620 Sum_probs=41.7
Q ss_pred ecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec-CChh
Q 018332 36 PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-HDEN 90 (358)
Q Consensus 36 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d-~~~~ 90 (358)
......++++++.||++||++|+.++|.+.++++++... +.++.++.. ..+.
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~i~~~~~~~~ 78 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVDDENPD 78 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC---cEEEEEECCCCChH
Confidence 444445899999999999999999999999999998762 667778775 3443
No 282
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.89 E-value=1e-05 Score=62.78 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=47.5
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccccccee
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGL 111 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l 111 (358)
+..+..++|+++|+|+++||++|+.|.... .++.+.++++ +|.+.+|.+... +..+
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~-----~v~~~~d~~~~e----------------~~~~ 68 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN-----FIFWQCDIDSSE----------------GQRF 68 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC-----EEEEEecCCCcc----------------HHHH
Confidence 556667899999999999999999998743 4466666654 555555543211 2356
Q ss_pred eeccccCCCCcc
Q 018332 112 IEDYGADAYPFT 123 (358)
Q Consensus 112 ~~~~gi~~~P~~ 123 (358)
++.|++.++|+.
T Consensus 69 ~~~~~~~~~P~~ 80 (114)
T cd02958 69 LQSYKVDKYPHI 80 (114)
T ss_pred HHHhCccCCCeE
Confidence 777888888853
No 283
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.89 E-value=0.00032 Score=69.34 Aligned_cols=166 Identities=14% Similarity=0.062 Sum_probs=92.9
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcc-cccccce-eeecc
Q 018332 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTL-IEEDLIG-LIEDY 115 (358)
Q Consensus 38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~-~~~~~~~-l~~~~ 115 (358)
+++++.+.++.|.. .|..|..+...++++++. .++ +++.....+. ..+.+ +..++.. =++-+
T Consensus 15 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~-s~~---i~~~~~~~~~-----------~~p~~~~~~~~~~~~i~f~ 78 (517)
T PRK15317 15 ELLERPIELVASLD-DSEKSAELKELLEEIASL-SDK---ITVEEDSLDV-----------RKPSFSITRPGEDTGVRFA 78 (517)
T ss_pred HhCCCCEEEEEEeC-CCchHHHHHHHHHHHHHh-CCc---eEEEEccCCC-----------CCCEEEEEcCCccceEEEE
Confidence 35667777777766 799999888877777663 333 5543322110 11211 1112111 12222
Q ss_pred ccCCCCcchHhHHHHHhhhhhhhccchhhHhhhhccCCceecCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHH
Q 018332 116 GADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEV 195 (358)
Q Consensus 116 gi~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l 195 (358)
+.|...++..-+.++.......+.+..-. .-.+..+.+..-+..|.++.||+|+.....++++
T Consensus 79 ---g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~--------------~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~ 141 (517)
T PRK15317 79 ---GIPMGHEFTSLVLALLQVGGHPPKLDQEV--------------IEQIKALDGDFHFETYVSLSCHNCPDVVQALNLM 141 (517)
T ss_pred ---ecCccHHHHHHHHHHHHhcCCCCCCCHHH--------------HHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHH
Confidence 45766655554444333221111111100 0123344455668889999999999988888887
Q ss_pred HHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018332 196 YNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 196 ~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
+... .++..-.| |... ..+++++|++.++|++++ +|+..+.
T Consensus 142 a~~~-----~~i~~~~i--d~~~---------------------~~~~~~~~~v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 142 AVLN-----PNITHTMI--DGAL---------------------FQDEVEARNIMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred HHhC-----CCceEEEE--Echh---------------------CHhHHHhcCCcccCEEEE---CCcEEEe
Confidence 6654 33443334 5433 478999999999999976 4454433
No 284
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.87 E-value=0.00012 Score=57.73 Aligned_cols=88 Identities=14% Similarity=0.221 Sum_probs=63.2
Q ss_pred EEEEEEec--cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 172 TIGLYFGA--HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 172 ~vlv~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
..+|+|.+ ..++-+....-.|.++.++|.+ .++.++-|.+|.+ ..++.+|||
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~---~~v~~akVDiD~~-----------------------~~LA~~fgV 89 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPD---YTWQVAIADLEQS-----------------------EAIGDRFGV 89 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcC---CceEEEEEECCCC-----------------------HHHHHHcCC
Confidence 44555543 2345566677788999999963 4588888888865 689999999
Q ss_pred CceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcC
Q 018332 250 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD 300 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~ 300 (358)
.++||+++| ++|+.+.+ +.|... .+++.+.+++.+.
T Consensus 90 ~siPTLl~F-kdGk~v~~-------i~G~~~-------k~~l~~~I~~~L~ 125 (132)
T PRK11509 90 FRFPATLVF-TGGNYRGV-------LNGIHP-------WAELINLMRGLVE 125 (132)
T ss_pred ccCCEEEEE-ECCEEEEE-------EeCcCC-------HHHHHHHHHHHhc
Confidence 999999999 88888877 456544 3455555665544
No 285
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.85 E-value=2.4e-05 Score=75.37 Aligned_cols=75 Identities=25% Similarity=0.460 Sum_probs=52.6
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHH-HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLI-EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF 247 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~-~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (358)
++|+|+|+|||.||-.|+...+..- +.....+- .+ ++.+..|-+. .+..+.++.++|
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~---~~--~vlLqaDvT~-----------------~~p~~~~lLk~~ 530 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL---QD--VVLLQADVTA-----------------NDPAITALLKRL 530 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc---CC--eEEEEeeecC-----------------CCHHHHHHHHHc
Confidence 4569999999999999999887553 22222221 33 4555544321 123367889999
Q ss_pred CCCceeeEEEECCCCcEE
Q 018332 248 NIKGIPALVLIGPDGKTI 265 (358)
Q Consensus 248 ~v~~~P~~~lid~~G~v~ 265 (358)
++-+.|++++++++|+-.
T Consensus 531 ~~~G~P~~~ff~~~g~e~ 548 (569)
T COG4232 531 GVFGVPTYLFFGPQGSEP 548 (569)
T ss_pred CCCCCCEEEEECCCCCcC
Confidence 999999999999888743
No 286
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=4.3e-05 Score=63.49 Aligned_cols=69 Identities=29% Similarity=0.468 Sum_probs=57.1
Q ss_pred ecccccCccc-ccCC-CC----ceecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 18 TVLASEGVEF-LLSR-QG----KVPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 18 ~~l~~~~~~~-l~~~-~g----~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
+++..+.++| +... .| +++++++.||.++++|| +..-+.|......|.+.+++|++.| .+++.+|+|+.
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~ 78 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSV 78 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcH
Confidence 4445556677 4444 45 39999988999999999 8888889999999999999999998 99999999963
No 287
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.83 E-value=9.8e-05 Score=52.60 Aligned_cols=63 Identities=16% Similarity=0.325 Sum_probs=39.7
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH-HcCCCce
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IFNIKGI 252 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~ 252 (358)
+..||++||++|+...+.|.++ ++.+-.++++.+... ...+.+ .+++.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~----------~~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~v 52 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL----------GAAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTV 52 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc----------CCceEEEeCcCCHhH-------------------HHHHHHHhCCCcee
Confidence 5679999999999988877553 233445666654310 112222 2588999
Q ss_pred eeEEEECCCCcEEec
Q 018332 253 PALVLIGPDGKTIST 267 (358)
Q Consensus 253 P~~~lid~~G~v~~~ 267 (358)
|++ ++ .+|+++..
T Consensus 53 P~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 53 PTV-KF-ADGSFLTN 65 (77)
T ss_pred CEE-EE-CCCeEecC
Confidence 997 45 46666644
No 288
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=3.8e-05 Score=64.34 Aligned_cols=93 Identities=24% Similarity=0.451 Sum_probs=70.2
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
+.+.++|.|++.|.+.|+...|.+.++..+|.. ..+.+-.|.+.. -...+.+|+
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~---~~lkFGkvDiGr-----------------------fpd~a~kfr 196 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN---NLLKFGKVDIGR-----------------------FPDVAAKFR 196 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCC---CCCcccceeecc-----------------------CcChHHhee
Confidence 347899999999999999999999999999986 666666665543 235667777
Q ss_pred C------CceeeEEEECCCCcEEecCcchhhhhc-CCCCCCCchhhHHH
Q 018332 249 I------KGIPALVLIGPDGKTISTNGKEMISLY-GAKAFPFTESRIAE 290 (358)
Q Consensus 249 v------~~~P~~~lid~~G~v~~~~g~~~~~~~-g~~~~p~~~~~~~~ 290 (358)
| +..||++++ .+|+-+.| +..+... .+..|+++++.+-+
T Consensus 197 is~s~~srQLPT~ilF-q~gkE~~R--rP~vd~~gra~s~~fSeenv~~ 242 (265)
T KOG0914|consen 197 ISLSPGSRQLPTYILF-QKGKEVSR--RPDVDVKGRAVSFPFSEENVCQ 242 (265)
T ss_pred eccCcccccCCeEEEE-ccchhhhc--CccccccCCcccccccHHHHHH
Confidence 6 468999999 78877655 3334444 36788998887554
No 289
>smart00594 UAS UAS domain.
Probab=97.79 E-value=2.1e-05 Score=61.91 Aligned_cols=69 Identities=16% Similarity=0.281 Sum_probs=49.6
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccccccee
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGL 111 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l 111 (358)
+..+.-++|+++|+|+++||++|+.+.... .++.+.++++ +|++.+|.+.. ++..+
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~-----fv~~~~dv~~~----------------eg~~l 78 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIREN-----FIFWQVDVDTS----------------EGQRV 78 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcC-----EEEEEecCCCh----------------hHHHH
Confidence 566667899999999999999999988864 3455556543 55555553321 12468
Q ss_pred eeccccCCCCcch
Q 018332 112 IEDYGADAYPFTR 124 (358)
Q Consensus 112 ~~~~gi~~~P~~~ 124 (358)
+..|++.+||+..
T Consensus 79 ~~~~~~~~~P~~~ 91 (122)
T smart00594 79 SQFYKLDSFPYVA 91 (122)
T ss_pred HHhcCcCCCCEEE
Confidence 8999999999743
No 290
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.77 E-value=0.00022 Score=55.36 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=49.3
Q ss_pred cCCcEEEEEEecc----CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHH
Q 018332 168 LAGKTIGLYFGAH----WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL 243 (358)
Q Consensus 168 ~~~k~vlv~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (358)
-.+|.++|+++++ ||..|+..+.. .++.+-+. .++-+.+.++.... ...+
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln----~~fv~w~~dv~~~e---------------------g~~l 68 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN----TRMLFWACSVAKPE---------------------GYRV 68 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH----cCEEEEEEecCChH---------------------HHHH
Confidence 3579999999999 88888776531 22222232 34444444444332 4689
Q ss_pred HHHcCCCceeeEEEE---CCCCcEEec
Q 018332 244 CRIFNIKGIPALVLI---GPDGKTIST 267 (358)
Q Consensus 244 ~~~~~v~~~P~~~li---d~~G~v~~~ 267 (358)
+..+++.++|++.++ +.+.+++.+
T Consensus 69 a~~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 69 SQALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred HHHhCCCCCCEEEEEEecCCceEEEEE
Confidence 999999999999999 445555655
No 291
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=97.72 E-value=1.6e-05 Score=49.74 Aligned_cols=30 Identities=33% Similarity=0.678 Sum_probs=27.2
Q ss_pred eecCcCCCCcceEEEcCCCC-CCCCcccccC
Q 018332 324 VCDCCKMRGRFWAFSCDVCN-YDLHPKCVEG 353 (358)
Q Consensus 324 ~C~~C~e~g~~~~~~~~~~~-~~~~~~~~~~ 353 (358)
.|++|++.+.|.+|+|.+|. |||+..|...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 59999999999999999995 9999999554
No 292
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.71 E-value=0.0012 Score=65.35 Aligned_cols=164 Identities=18% Similarity=0.156 Sum_probs=92.8
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcc-cccccceeeeccc
Q 018332 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTL-IEEDLIGLIEDYG 116 (358)
Q Consensus 38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~g 116 (358)
+++++.+.++.|.. .|..|..+...++++++. .++ +++...+.+.+. .+.+ +..++. .+|
T Consensus 15 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~-s~k---i~~~~~~~~~~~----------~p~~~~~~~~~----~~~ 75 (515)
T TIGR03140 15 ASLENPVTLVLSAG-SHEKSKELLELLDEIASL-SDK---ISLTQNTADTLR----------KPSFTILRDGA----DTG 75 (515)
T ss_pred HhcCCCEEEEEEeC-CCchhHHHHHHHHHHHHh-CCC---eEEEEecCCcCC----------CCeEEEecCCc----ccc
Confidence 34677777777776 688898887777776663 333 555444332211 1211 111111 123
Q ss_pred cC--CCCcchHhHHHHHhhhhhhhccchhhHhhhhccCCceecCCCce-eeecccCCcEEEEEEeccCCcccHhhHHHHH
Q 018332 117 AD--AYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRK-ITVSELAGKTIGLYFGAHWCPPCRSFTSQLI 193 (358)
Q Consensus 117 i~--~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~-~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~ 193 (358)
|+ +.|...++..-+.++.......+.+ +.+. -.+..+.++.-+..|..+.||+|+.....++
T Consensus 76 i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l---------------~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~ 140 (515)
T TIGR03140 76 IRFAGIPGGHEFTSLVLAILQVGGHGPKL---------------DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALN 140 (515)
T ss_pred eEEEecCCcHHHHHHHHHHHHhcCCCCCC---------------CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHH
Confidence 32 4576665554444433222111111 1111 1233445566688899999999998888787
Q ss_pred HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEe
Q 018332 194 EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS 266 (358)
Q Consensus 194 ~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~ 266 (358)
++..+.. ++.. -.+|... ..+++++|++.++|++++ +|+.+.
T Consensus 141 ~~a~~~p-----~i~~--~~id~~~---------------------~~~~~~~~~v~~VP~~~i---~~~~~~ 182 (515)
T TIGR03140 141 QMALLNP-----NISH--TMIDGAL---------------------FQDEVEALGIQGVPAVFL---NGEEFH 182 (515)
T ss_pred HHHHhCC-----CceE--EEEEchh---------------------CHHHHHhcCCcccCEEEE---CCcEEE
Confidence 7766643 3333 3345433 478889999999999986 444443
No 293
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.71 E-value=0.00013 Score=56.51 Aligned_cols=77 Identities=21% Similarity=0.445 Sum_probs=48.0
Q ss_pred CCcEEEEEEec-------cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHH
Q 018332 169 AGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ 241 (358)
Q Consensus 169 ~~k~vlv~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (358)
.+++++|+|++ +|||.|....|.+++...+.. .+..+|.+.+... ..|+. ++.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~----~~~~lv~v~VG~r-~~Wkd---------------p~n 77 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP----ENARLVYVEVGDR-PEWKD---------------PNN 77 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S----TTEEEEEEE---H-HHHC----------------TTS
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC----CCceEEEEEcCCH-HHhCC---------------CCC
Confidence 35677888874 599999999999998877754 5667777776532 23321 123
Q ss_pred HHHH--HcCCCceeeEEEECCCCcEE
Q 018332 242 DLCR--IFNIKGIPALVLIGPDGKTI 265 (358)
Q Consensus 242 ~l~~--~~~v~~~P~~~lid~~G~v~ 265 (358)
.+.. .++++++||++-++..++++
T Consensus 78 ~fR~~p~~~l~~IPTLi~~~~~~rL~ 103 (119)
T PF06110_consen 78 PFRTDPDLKLKGIPTLIRWETGERLV 103 (119)
T ss_dssp HHHH--CC---SSSEEEECTSS-EEE
T ss_pred CceEcceeeeeecceEEEECCCCccc
Confidence 4444 69999999999996665544
No 294
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.69 E-value=0.00019 Score=50.44 Aligned_cols=55 Identities=20% Similarity=0.637 Sum_probs=40.4
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
+..|+++||++|+...+.|.+ .++.+..++++.+.+. ...+.+.+++.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~----------~~i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP 52 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS----------KGIAFEEIDVEKDSAA-------------------REEVLKVLGQRGVP 52 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH----------CCCeEEEEeccCCHHH-------------------HHHHHHHhCCCccc
Confidence 457999999999998877643 3456777777765311 24567788999999
Q ss_pred eEEE
Q 018332 254 ALVL 257 (358)
Q Consensus 254 ~~~l 257 (358)
++++
T Consensus 53 ~~~~ 56 (74)
T TIGR02196 53 VIVI 56 (74)
T ss_pred EEEE
Confidence 9986
No 295
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.68 E-value=0.00011 Score=53.27 Aligned_cols=60 Identities=22% Similarity=0.441 Sum_probs=41.8
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
++.|+++|||+|....+.|.++. +. ..+.++-|+.+.+...+ ...+.+.+++..+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~----~~~~~~~v~~~~~~~~~------------------~~~l~~~~g~~~vP 56 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK----PAYEVVELDQLSNGSEI------------------QDYLEEITGQRTVP 56 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC----CCCEEEEeeCCCChHHH------------------HHHHHHHhCCCCCC
Confidence 46799999999999999888764 22 23667777665443211 23466778999999
Q ss_pred eEEE
Q 018332 254 ALVL 257 (358)
Q Consensus 254 ~~~l 257 (358)
++++
T Consensus 57 ~v~i 60 (84)
T TIGR02180 57 NIFI 60 (84)
T ss_pred eEEE
Confidence 9853
No 296
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=97.66 E-value=0.00024 Score=54.12 Aligned_cols=56 Identities=30% Similarity=0.450 Sum_probs=51.3
Q ss_pred ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
+.+.+|+ ++|++++||++||-=.|+-|+.-. ....|++++++++++| ++|++.-|+
T Consensus 6 ~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcn 62 (108)
T PF00255_consen 6 AKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCN 62 (108)
T ss_dssp EEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBS
T ss_pred eeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehH
Confidence 6789999 999999999999999999999888 7779999999999888 888888775
No 297
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=97.65 E-value=7.2e-05 Score=64.45 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=66.2
Q ss_pred CCceecccccCcccccCCCCc-eecccCCCCEEEEEEeCCCChh-hhhhhHHHHHHHHHHhcC-CCceEEEEEEecC---
Q 018332 14 SDFLTVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTR-GTELEVIFISFDH--- 87 (358)
Q Consensus 14 ~~~~~~l~~~~~~~l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~~~~~~~~l~~~-~~~~~iv~i~~d~--- 87 (358)
..+-+...+ +.-.|++.+|+ ++-.++.||.+++||--+.||. |......+.++-+++.++ +-+..-++|+||.
T Consensus 111 ~~~gk~~iG-GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD 189 (280)
T KOG2792|consen 111 RTAGKPAIG-GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERD 189 (280)
T ss_pred hhcCCCccC-CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccC
Confidence 444444554 44559999999 9999999999999999999998 999888888888887554 4345579999997
Q ss_pred ChhHHHHHHhhCCCcc
Q 018332 88 DENGFEEHFKSSDGTL 103 (358)
Q Consensus 88 ~~~~~~~~~~~~~~~~ 103 (358)
+.+.+.+|..+=++++
T Consensus 190 ~~~~~~eY~~eF~pkl 205 (280)
T KOG2792|consen 190 SVEVVAEYVSEFHPKL 205 (280)
T ss_pred CHHHHHHHHHhcChhh
Confidence 3445555544433333
No 298
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.58 E-value=0.0012 Score=58.71 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=57.7
Q ss_pred cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeC---CCC-------------H-HHHHHhhhcCCc
Q 018332 168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST---DRD-------------H-KEFDLNHSIMPW 230 (358)
Q Consensus 168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~---d~~-------------~-~~~~~~~~~~~~ 230 (358)
-.+|.+++.|..+.||+|+++...+..+.+. .+++|..+.+ ..+ + ..|......+..
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~ 188 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGK 188 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhc
Confidence 3568899999999999999999887765432 3355555543 111 1 112211111110
Q ss_pred ccc-cc---------CchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018332 231 LAI-PY---------EDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 231 ~~~-~~---------~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
..+ +. ..+.+..+.+.+|++++|++++.|.+|++...
T Consensus 189 ~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 189 LGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV 235 (251)
T ss_pred cCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence 000 10 11234568889999999999999999986544
No 299
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.56 E-value=0.0015 Score=57.31 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=54.5
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC---CH----------------HHHHHhhhcCC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DH----------------KEFDLNHSIMP 229 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~----------------~~~~~~~~~~~ 229 (358)
.+|.+++.|..+.||+|+++.+.+.++.+ .+++|.++...- .. ..|........
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~-------~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~ 178 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA-------LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKD 178 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc-------CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence 46889999999999999999988776532 346666553321 11 11222221111
Q ss_pred c--cccccCchhHHHHHHHcCCCceeeEEEECCCCcEE
Q 018332 230 W--LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 265 (358)
Q Consensus 230 ~--~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 265 (358)
. .......+.+..+++++||+++|++++ ++|+++
T Consensus 179 ~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 179 VSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred CCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 0 011112345678999999999999984 577765
No 300
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.49 E-value=0.00083 Score=47.92 Aligned_cols=58 Identities=28% Similarity=0.527 Sum_probs=40.9
Q ss_pred eccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEE
Q 018332 178 GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVL 257 (358)
Q Consensus 178 ~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~l 257 (358)
++++|+.|......++++..++. +.+-.+.. .+ ...+ .+|||.++|++ +
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~------i~~ei~~~-~~----------------------~~~~-~~ygv~~vPal-v 54 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG------IEVEIIDI-ED----------------------FEEI-EKYGVMSVPAL-V 54 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT------EEEEEEET-TT----------------------HHHH-HHTT-SSSSEE-E
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC------CeEEEEEc-cC----------------------HHHH-HHcCCCCCCEE-E
Confidence 57789999988888888877763 34433444 22 2555 89999999999 4
Q ss_pred ECCCCcEEecC
Q 018332 258 IGPDGKTISTN 268 (358)
Q Consensus 258 id~~G~v~~~~ 268 (358)
+ ||++++.+
T Consensus 55 I--ng~~~~~G 63 (76)
T PF13192_consen 55 I--NGKVVFVG 63 (76)
T ss_dssp E--TTEEEEES
T ss_pred E--CCEEEEEe
Confidence 5 58887663
No 301
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.35 E-value=0.00045 Score=48.44 Aligned_cols=36 Identities=25% Similarity=0.643 Sum_probs=27.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~ 90 (358)
+..|+++||++|+...+.|.+ .+ +.+..++++.+..
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~ 37 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSA 37 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHH
Confidence 467999999999998887754 23 6677788876554
No 302
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0011 Score=52.91 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=57.2
Q ss_pred ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC-------ChhHHHHHHhhC
Q 018332 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFKSS 99 (358)
Q Consensus 28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~-------~~~~~~~~~~~~ 99 (358)
+.+.+|+ ++|++++||++||-=.|+-|+.-.+ ...|+.+|++|+++| ++|+..-|+. +.+...+|...+
T Consensus 10 ~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~fC~~~ 86 (162)
T COG0386 10 VKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAKFCQLN 86 (162)
T ss_pred eeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHHHHHhc
Confidence 7889999 9999999999999999999987664 346788999999999 8888887762 345566666654
Q ss_pred CC
Q 018332 100 DG 101 (358)
Q Consensus 100 ~~ 101 (358)
.|
T Consensus 87 Yg 88 (162)
T COG0386 87 YG 88 (162)
T ss_pred cC
Confidence 44
No 303
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=97.31 E-value=0.00011 Score=46.23 Aligned_cols=30 Identities=33% Similarity=0.805 Sum_probs=26.0
Q ss_pred eecCcCC-CCcceEEEcCCCC-CCCCcccccC
Q 018332 324 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVEG 353 (358)
Q Consensus 324 ~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~~ 353 (358)
.|++|++ ...|.+|+|.+|. |||+..|...
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 5999996 5679999999995 9999999654
No 304
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=97.29 E-value=0.00012 Score=44.82 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=26.6
Q ss_pred eecCcCC-CCcceEEEcCCCC-CCCCcccccC
Q 018332 324 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVEG 353 (358)
Q Consensus 324 ~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~~ 353 (358)
.|++|.. +..|.+|+|..|. |||+..|-..
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~ 33 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSR 33 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence 5999998 7899999999998 9999999543
No 305
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.26 E-value=0.0016 Score=43.99 Aligned_cols=55 Identities=20% Similarity=0.395 Sum_probs=39.7
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
++.|+.+||++|......|.+ .++.+-.+.++.+.+. ...+.+..|..++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----------~~i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~~P 51 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----------KGIPYEEVDVDEDEEA-------------------REELKELSGVRTVP 51 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----------TTBEEEEEEGGGSHHH-------------------HHHHHHHHSSSSSS
T ss_pred cEEEEcCCCcCHHHHHHHHHH----------cCCeeeEcccccchhH-------------------HHHHHHHcCCCccC
Confidence 467899999999988777633 4466777777765311 34566666999999
Q ss_pred eEEE
Q 018332 254 ALVL 257 (358)
Q Consensus 254 ~~~l 257 (358)
++++
T Consensus 52 ~v~i 55 (60)
T PF00462_consen 52 QVFI 55 (60)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 306
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.25 E-value=0.0031 Score=53.95 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=55.6
Q ss_pred eecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC--CH--------------HHHHHhhhc
Q 018332 164 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DH--------------KEFDLNHSI 227 (358)
Q Consensus 164 ~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~--~~--------------~~~~~~~~~ 227 (358)
....-.+++.++.|+.+.||+|+++.+.+.+ .. .+-.+.++.+.+.. .. +.|.+....
T Consensus 71 ~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~--~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~ 144 (197)
T cd03020 71 VYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----NA--DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSG 144 (197)
T ss_pred EEcCCCCCEEEEEEECCCCccHHHHHHHHhh----cc--CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhC
Confidence 3333347899999999999999999988766 11 11334444444432 11 122222221
Q ss_pred CCc----cccccCchhHHHHHHHcCCCceeeEEEECCCCcEE
Q 018332 228 MPW----LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 265 (358)
Q Consensus 228 ~~~----~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 265 (358)
..- .......+.+..+++.+|++++|+++ + ++|+++
T Consensus 145 ~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 145 GKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred CCCCCCccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 111 01112334567899999999999997 5 557664
No 307
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00086 Score=50.92 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=50.8
Q ss_pred CCcEEEEEEec--------cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhH
Q 018332 169 AGKTIGLYFGA--------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR 240 (358)
Q Consensus 169 ~~k~vlv~F~a--------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (358)
+|+.++++|.+ +|||.|.+..|.+.+..++.. .++.+|.+.+...+ +-.++.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap----~~~~~v~v~VG~rp----------------~Wk~p~ 83 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP----EDVHFVHVYVGNRP----------------YWKDPA 83 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC----CceEEEEEEecCCC----------------cccCCC
Confidence 34557777764 699999999999988877655 67778888776431 111223
Q ss_pred HHHHHHcCC-CceeeEEEECC
Q 018332 241 QDLCRIFNI-KGIPALVLIGP 260 (358)
Q Consensus 241 ~~l~~~~~v-~~~P~~~lid~ 260 (358)
..+....++ .++||++=.++
T Consensus 84 n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 84 NPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred CccccCCCceeecceeeEEcC
Confidence 455666666 89999998864
No 308
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.21 E-value=0.00041 Score=50.26 Aligned_cols=40 Identities=23% Similarity=0.428 Sum_probs=27.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~ 90 (358)
++.|+++|||+|++..+.|.++. ... .++++-|+.+.+..
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~ 40 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGS 40 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChH
Confidence 46899999999999999888765 221 25566665554433
No 309
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.20 E-value=0.0025 Score=46.47 Aligned_cols=65 Identities=22% Similarity=0.382 Sum_probs=44.9
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC--CCc
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN--IKG 251 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~ 251 (358)
+..|+.+||++|......|+++..++ .++.+..++++.+..+ ..++.+.++ +..
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~-----~~i~~~~idi~~~~~~-------------------~~el~~~~~~~~~~ 58 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER-----DDFDYRYVDIHAEGIS-------------------KADLEKTVGKPVET 58 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc-----cCCcEEEEECCCChHH-------------------HHHHHHHHCCCCCc
Confidence 56799999999999999999887654 3466777777754311 133444444 588
Q ss_pred eeeEEEECCCCcEE
Q 018332 252 IPALVLIGPDGKTI 265 (358)
Q Consensus 252 ~P~~~lid~~G~v~ 265 (358)
+|+++ + +|+.+
T Consensus 59 vP~if-i--~g~~i 69 (85)
T PRK11200 59 VPQIF-V--DQKHI 69 (85)
T ss_pred CCEEE-E--CCEEE
Confidence 99976 4 56654
No 310
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.14 E-value=0.00056 Score=59.21 Aligned_cols=48 Identities=31% Similarity=0.434 Sum_probs=42.3
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~ 87 (358)
-.|.++.+++-|++||.+.|+.|..+.|.+..+++++ | ++|+.|++|.
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g--~~v~~vs~DG 160 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---G--FSVIPVSLDG 160 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---C--CEEEEEecCC
Confidence 4455567899999999999999999999999999988 4 8899999995
No 311
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.13 E-value=0.00048 Score=66.64 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=43.6
Q ss_pred cCCCCEEEEEEeCCCChhhhhhhHHHH-HHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018332 39 SCGGKTICLFFSANWCRPCKTFTPQLV-QLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA 117 (358)
Q Consensus 39 ~~~gk~vlv~F~a~wC~~C~~~~p~~~-~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 117 (358)
+-++|+|+|+|||+||-.||.+.+..- +.....+-.+ +....+++..+... ..++.++||+
T Consensus 471 ~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~--~vlLqaDvT~~~p~----------------~~~lLk~~~~ 532 (569)
T COG4232 471 EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD--VVLLQADVTANDPA----------------ITALLKRLGV 532 (569)
T ss_pred hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC--eEEEEeeecCCCHH----------------HHHHHHHcCC
Confidence 345569999999999999999999654 3344444444 44444444332221 1367888888
Q ss_pred CCCCc
Q 018332 118 DAYPF 122 (358)
Q Consensus 118 ~~~P~ 122 (358)
.+-|+
T Consensus 533 ~G~P~ 537 (569)
T COG4232 533 FGVPT 537 (569)
T ss_pred CCCCE
Confidence 88885
No 312
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.12 E-value=0.00026 Score=44.45 Aligned_cols=29 Identities=31% Similarity=0.793 Sum_probs=26.1
Q ss_pred eecCcCC-CCcceEEEcCCCC-CCCCccccc
Q 018332 324 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 352 (358)
Q Consensus 324 ~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~ 352 (358)
.|++|+. ...|.+|+|.+|. |||...|-.
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~ 32 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFK 32 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhC
Confidence 5999996 7899999999999 999999954
No 313
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.06 E-value=0.0014 Score=43.86 Aligned_cols=41 Identities=27% Similarity=0.617 Sum_probs=32.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~ 90 (358)
++.||++||++|+.+.+.+.++ . .... ++.++.++++....
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~-~~~~--~~~~~~~~~~~~~~ 41 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-A-LLNK--GVKFEAVDVDEDPA 41 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-H-hhCC--CcEEEEEEcCCChH
Confidence 4789999999999999999988 2 3333 38899998886553
No 314
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.05 E-value=0.00025 Score=44.93 Aligned_cols=28 Identities=29% Similarity=0.759 Sum_probs=26.0
Q ss_pred eecCcCCCCcceEEEcCCCC-CCCCcccc
Q 018332 324 VCDCCKMRGRFWAFSCDVCN-YDLHPKCV 351 (358)
Q Consensus 324 ~C~~C~e~g~~~~~~~~~~~-~~~~~~~~ 351 (358)
.|++|+....+.+|+|.+|. |||+..|-
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf 30 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCF 30 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHH
Confidence 49999999999999999999 99999993
No 315
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0014 Score=53.32 Aligned_cols=87 Identities=23% Similarity=0.238 Sum_probs=60.9
Q ss_pred cCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh--hHHHHHHhhCC----
Q 018332 29 LSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGFEEHFKSSD---- 100 (358)
Q Consensus 29 ~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~--~~~~~~~~~~~---- 100 (358)
.+..-+ ++|+++.||+|++.|| ..+--.|....-.|-..+.++++.+ -+++.+++|+.. -+|...-.+.-
T Consensus 19 VdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS~fshlAW~ntprk~gGlg~ 96 (196)
T KOG0852|consen 19 VDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDSVFSHLAWINTPRKQGGLGP 96 (196)
T ss_pred EcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccchhhhhhHhcCchhhCCcCc
Confidence 333444 9999999999999999 5565669888888888999998887 889999999642 23333333311
Q ss_pred --Ccccccccceeeecccc
Q 018332 101 --GTLIEEDLIGLIEDYGA 117 (358)
Q Consensus 101 --~~~~~~~~~~l~~~~gi 117 (358)
..++.+...++++.||+
T Consensus 97 ~~iPllsD~~~~IsrdyGv 115 (196)
T KOG0852|consen 97 LNIPLLSDLNHEISRDYGV 115 (196)
T ss_pred cccceeeccchhhHHhcCc
Confidence 13445555566666665
No 316
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0019 Score=54.82 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=29.1
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHH
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTL 71 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l 71 (358)
+++.+++.|||+||.+|.++...++.+++..
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~ 46 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF 46 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh
Confidence 6899999999999999999999999999887
No 317
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.95 E-value=0.00042 Score=44.30 Aligned_cols=31 Identities=29% Similarity=0.757 Sum_probs=27.8
Q ss_pred eeecCcCC-CCcceEEEcCCCC---CCCCcccccC
Q 018332 323 YVCDCCKM-RGRFWAFSCDVCN---YDLHPKCVEG 353 (358)
Q Consensus 323 ~~C~~C~e-~g~~~~~~~~~~~---~~~~~~~~~~ 353 (358)
|.|++|++ +..|.+|+|.+|+ |||...|-..
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~ 35 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK 35 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence 56999998 8999999999998 9999999544
No 318
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=96.93 E-value=0.00048 Score=44.20 Aligned_cols=29 Identities=31% Similarity=0.663 Sum_probs=26.0
Q ss_pred eecCcCC-CCcceEEEcCCCC-CCCCccccc
Q 018332 324 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 352 (358)
Q Consensus 324 ~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~ 352 (358)
.|++|+. ...|.+|+|.+|. |||...|-.
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~ 32 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFF 32 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHh
Confidence 5999996 6899999999999 999999943
No 319
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0015 Score=52.81 Aligned_cols=57 Identities=25% Similarity=0.433 Sum_probs=52.1
Q ss_pred ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
+.+.+|+ |+|+.++||++|+-=-|+-|+.=..-...|..++++|+++| ++|++--|.
T Consensus 19 ~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCN 76 (171)
T KOG1651|consen 19 AKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCN 76 (171)
T ss_pred EecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccc
Confidence 7899999 99999999999999999999998866779999999999999 888877775
No 320
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=96.91 E-value=0.00046 Score=43.95 Aligned_cols=32 Identities=31% Similarity=0.617 Sum_probs=29.0
Q ss_pred eeecCcCCCCcceEEEcCCCC-CCCCcccccCc
Q 018332 323 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVEGI 354 (358)
Q Consensus 323 ~~C~~C~e~g~~~~~~~~~~~-~~~~~~~~~~~ 354 (358)
|.|+.|.....|.+|+|.+|. |||+..|-...
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 579999999999999999999 99999996654
No 321
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.79 E-value=0.00049 Score=56.24 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=35.3
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhH-HH--HHHHHHHhcCCCceEEEEEEecCCh
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTP-QL--VQLYDTLRTRGTELEVIFISFDHDE 89 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p-~~--~~~~~~l~~~~~~~~iv~i~~d~~~ 89 (358)
+..+..++|+|+|.++++||+.|..|.. .| .++++.++++ +|.|.+|.++
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-----FI~VkvDree 82 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-----FIPVKVDREE 82 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH------EEEEEETTT
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-----EEEEEecccc
Confidence 7777788999999999999999998886 33 4477777766 7777777654
No 322
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.77 E-value=0.0042 Score=55.44 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=51.4
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
+..|||.||-+.++.|..+...|..|+.+|.. +.++-|..... .+...|..
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-----vKFvkI~a~~~------------------------~~~~~f~~ 196 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE-----VKFVKIRASKC------------------------PASENFPD 196 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-----SEEEEEEECGC------------------------CTTTTS-T
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-----eEEEEEehhcc------------------------CcccCCcc
Confidence 45899999999999999999999999999964 66666655421 14567889
Q ss_pred CceeeEEEECCCCcEEec
Q 018332 250 KGIPALVLIGPDGKTIST 267 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~~~ 267 (358)
..+|+++++ ++|.++..
T Consensus 197 ~~LPtllvY-k~G~l~~~ 213 (265)
T PF02114_consen 197 KNLPTLLVY-KNGDLIGN 213 (265)
T ss_dssp TC-SEEEEE-ETTEEEEE
T ss_pred cCCCEEEEE-ECCEEEEe
Confidence 999999999 78888765
No 323
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.75 E-value=0.0035 Score=44.37 Aligned_cols=36 Identities=22% Similarity=0.609 Sum_probs=26.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~ 90 (358)
++.|+++||++|+++.+.|.++ + +++..++++.+..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~ 37 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEG 37 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHh
Confidence 4689999999999999977653 3 3455677775543
No 324
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0012 Score=55.66 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=47.4
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
+.++++|.|||.|.+.|+.+.|.|.+++.+++..+ +.+-.|++..-. ..+.+|+|..-
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGrfp--------------------d~a~kfris~s 200 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGRFP--------------------DVAAKFRISLS 200 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCC--CcccceeeccCc--------------------ChHHheeeccC
Confidence 34699999999999999999999999999998876 556555554322 35677888777
Q ss_pred Cc
Q 018332 121 PF 122 (358)
Q Consensus 121 P~ 122 (358)
|.
T Consensus 201 ~~ 202 (265)
T KOG0914|consen 201 PG 202 (265)
T ss_pred cc
Confidence 74
No 325
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=96.71 E-value=0.00091 Score=42.10 Aligned_cols=32 Identities=34% Similarity=0.717 Sum_probs=28.5
Q ss_pred ceeecCcCCCCcceEEEcCCCC-CCCCcccccC
Q 018332 322 AYVCDCCKMRGRFWAFSCDVCN-YDLHPKCVEG 353 (358)
Q Consensus 322 ~~~C~~C~e~g~~~~~~~~~~~-~~~~~~~~~~ 353 (358)
.+.|+.|.....|-+|+|..|. |||.+.|=..
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence 4679999999999999999997 9999999543
No 326
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0033 Score=53.44 Aligned_cols=69 Identities=14% Similarity=0.313 Sum_probs=54.5
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
+++.+++.||+.||.+|.++...+..+.+..++ +.+++.+.+. ...++..+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~-------~~~~k~~a~~---------------------~~eis~~~~ 67 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN-------AQFLKLEAEE---------------------FPEISNLIA 67 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh-------heeeeehhhh---------------------hhHHHHHHH
Confidence 678999999999999999999888888777743 5556666543 578999999
Q ss_pred CCceeeEEEECCCCcEEe
Q 018332 249 IKGIPALVLIGPDGKTIS 266 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~ 266 (358)
+.+.|.+.++ ..|+.+.
T Consensus 68 v~~vp~~~~~-~~~~~v~ 84 (227)
T KOG0911|consen 68 VEAVPYFVFF-FLGEKVD 84 (227)
T ss_pred HhcCceeeee-ecchhhh
Confidence 9999999988 4444443
No 327
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.64 E-value=0.0041 Score=44.71 Aligned_cols=63 Identities=27% Similarity=0.406 Sum_probs=41.4
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
++.|.++|||+|......|.++.. .+.++-+..+.+..+. ...+.+..|..++|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~--------~~~~~~v~~~~~~~~~------------------~~~~~~~~g~~~~P 55 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV--------KPAVVELDQHEDGSEI------------------QDYLQELTGQRTVP 55 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC--------CcEEEEEeCCCChHHH------------------HHHHHHHhCCCCCC
Confidence 467889999999998888776533 3456666665442111 23566677899999
Q ss_pred eEEEECCCCcEE
Q 018332 254 ALVLIGPDGKTI 265 (358)
Q Consensus 254 ~~~lid~~G~v~ 265 (358)
.++ + +|+.+
T Consensus 56 ~v~-~--~g~~i 64 (82)
T cd03419 56 NVF-I--GGKFI 64 (82)
T ss_pred eEE-E--CCEEE
Confidence 974 4 45543
No 328
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=96.59 E-value=0.00056 Score=43.52 Aligned_cols=31 Identities=35% Similarity=0.747 Sum_probs=24.9
Q ss_pred ceeecCcCC-CCcceEEEcCCCC-CCCCccccc
Q 018332 322 AYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 352 (358)
Q Consensus 322 ~~~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~ 352 (358)
.+.|++|.. ...|.+|+|..|. |||.+.|-.
T Consensus 4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~ 36 (46)
T PF00569_consen 4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFS 36 (46)
T ss_dssp SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHH
T ss_pred CeECcCCCCCcCcCCeEECCCCCCCchhhHHHh
Confidence 578999998 7789999999999 999999943
No 329
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.55 E-value=0.0062 Score=44.88 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=49.1
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC--CC----HHHHHH-hhh-cCCccccccCch-hHHHHH
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD--RD----HKEFDL-NHS-IMPWLAIPYEDR-ARQDLC 244 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d--~~----~~~~~~-~~~-~~~~~~~~~~~~-~~~~l~ 244 (358)
+..|+.+.||+|....+.+.++..... .++.+..+.+. .. ...... ... ........+... ......
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD----GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALA 76 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC----CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 357899999999999999988874433 66777776653 22 111111 000 000000000000 356788
Q ss_pred HHcCCCceeeEEEEC
Q 018332 245 RIFNIKGIPALVLIG 259 (358)
Q Consensus 245 ~~~~v~~~P~~~lid 259 (358)
+.+|+.++|++++-|
T Consensus 77 ~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 77 RALGVTGTPTFVVNG 91 (98)
T ss_pred HHcCCCCCCEEEECC
Confidence 899999999999875
No 330
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=96.36 E-value=0.0022 Score=41.27 Aligned_cols=29 Identities=31% Similarity=0.742 Sum_probs=26.4
Q ss_pred eecCcCC-CCcceEEEcCCCC-CCCCccccc
Q 018332 324 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE 352 (358)
Q Consensus 324 ~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~ 352 (358)
.|++|+. ...|.+|+|.+|. |||...|-.
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~ 32 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYT 32 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHh
Confidence 5999999 8899999999999 999999944
No 331
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.35 E-value=0.0026 Score=50.38 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=34.4
Q ss_pred cccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018332 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG 91 (358)
Q Consensus 37 l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~ 91 (358)
++.+..+.-++-|..+|||.|....|.|.++++... ++++-.+..|.+.+.
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~el 86 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKEL 86 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHHH
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChhH
Confidence 444567889999999999999999999999999642 377777877765543
No 332
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.33 E-value=0.018 Score=40.00 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=35.6
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
++.|+++||++|......|.+ .++.+..+.+|.+.+. ...+.+..++.++|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~----------~~i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP 52 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE----------RGIPFEEVDVDEDPEA-------------------LEELKKLNGYRSVP 52 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH----------CCCCeEEEeCCCCHHH-------------------HHHHHHHcCCcccC
Confidence 467899999999987766644 2345556666654311 12344444788999
Q ss_pred eEEE
Q 018332 254 ALVL 257 (358)
Q Consensus 254 ~~~l 257 (358)
++++
T Consensus 53 ~i~~ 56 (73)
T cd02976 53 VVVI 56 (73)
T ss_pred EEEE
Confidence 9875
No 333
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=96.32 E-value=0.0025 Score=41.10 Aligned_cols=30 Identities=30% Similarity=0.723 Sum_probs=26.2
Q ss_pred eecCcC-CCCcceEEEcCCCC-CCCCcccccC
Q 018332 324 VCDCCK-MRGRFWAFSCDVCN-YDLHPKCVEG 353 (358)
Q Consensus 324 ~C~~C~-e~g~~~~~~~~~~~-~~~~~~~~~~ 353 (358)
.|++|+ ....|.+|+|..|. |||...|-..
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~ 33 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDS 33 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhC
Confidence 599999 67889999999998 9999999443
No 334
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.31 E-value=0.027 Score=38.82 Aligned_cols=60 Identities=20% Similarity=0.370 Sum_probs=40.4
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
++.|.++||++|+.....|.+. ++.+..++++.+.+ ....+.+..+...+|
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~----------~i~~~~~di~~~~~-------------------~~~~l~~~~~~~~~P 52 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL----------GIEFEEIDILEDGE-------------------LREELKELSGWPTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------CCcEEEEECCCCHH-------------------HHHHHHHHhCCCCcC
Confidence 4578899999999988877653 24566667665532 124566667778899
Q ss_pred eEEEECCCCcEE
Q 018332 254 ALVLIGPDGKTI 265 (358)
Q Consensus 254 ~~~lid~~G~v~ 265 (358)
++++ +|+.+
T Consensus 53 ~~~~---~~~~i 61 (72)
T cd02066 53 QIFI---NGEFI 61 (72)
T ss_pred EEEE---CCEEE
Confidence 8754 55554
No 335
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.28 E-value=0.0024 Score=41.15 Aligned_cols=31 Identities=29% Similarity=0.686 Sum_probs=26.2
Q ss_pred eeecCcCCCCcc-eEEEcCCCC-CCCCcccccC
Q 018332 323 YVCDCCKMRGRF-WAFSCDVCN-YDLHPKCVEG 353 (358)
Q Consensus 323 ~~C~~C~e~g~~-~~~~~~~~~-~~~~~~~~~~ 353 (358)
|.|++|.+...+ .+|+|.+|. |||...|-..
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~ 33 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSA 33 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhC
Confidence 469999997666 999999995 9999999543
No 336
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.27 E-value=0.045 Score=45.65 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=34.1
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEe
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS 213 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~ 213 (358)
.+++.++.|+...||+|..+.+.+..+.+++. .++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~----~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP----KDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC----CCceEEEcC
Confidence 57899999999999999999999999988875 455555544
No 337
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.26 E-value=0.03 Score=48.15 Aligned_cols=114 Identities=12% Similarity=0.139 Sum_probs=76.0
Q ss_pred ccCCceecCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH-HhhhcC
Q 018332 150 EGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD-LNHSIM 228 (358)
Q Consensus 150 ~~p~f~l~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~-~~~~~~ 228 (358)
++|.+.+ +| ...+.+..|+++||.+-..+|..|...+..|..|..++....-.++.++.|+--.....+. ..++..
T Consensus 9 ~~p~W~i--~~-~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r 85 (238)
T PF04592_consen 9 PPPPWKI--GG-QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRR 85 (238)
T ss_pred CCCCceE--CC-chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHh
Confidence 4555653 22 3466778899999999999999999999999999999987444567777776543333222 122222
Q ss_pred CccccccC--chhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018332 229 PWLAIPYE--DRARQDLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 229 ~~~~~~~~--~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
--..+|+. +.....+...++-.. =-++|+|+=|++++.
T Consensus 86 ~~~~ipVyqq~~~q~dvW~~L~G~k-dD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 86 VSEHIPVYQQDENQPDVWELLNGSK-DDFLIYDRCGRLTYH 125 (238)
T ss_pred CCCCCceecCCccccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence 11235554 234456666666443 357899999999987
No 338
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.16 E-value=0.00061 Score=58.05 Aligned_cols=58 Identities=22% Similarity=0.448 Sum_probs=43.5
Q ss_pred EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcc
Q 018332 44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT 123 (358)
Q Consensus 44 ~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~ 123 (358)
-+++.|+|||||.|+...|+|...+.--.+-+ +.+..|++..+. .|.-+|-+.+.|+.
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDvt~np--------------------gLsGRF~vtaLptI 98 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDVTTNP--------------------GLSGRFLVTALPTI 98 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEEEecc--------------------ccceeeEEEecceE
Confidence 47799999999999999999988776544444 666666655433 56777778888864
No 339
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.11 E-value=0.03 Score=42.25 Aligned_cols=74 Identities=16% Similarity=0.277 Sum_probs=52.6
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
.++++|+=.++.||........|++.++... +++.+.++.+-... +..+.+++.|||
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~----~~~~~y~l~v~~~R-------------------~vSn~IAe~~~V 75 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESP----DEIPVYYLDVIEYR-------------------PVSNAIAEDFGV 75 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT--------EEEEEGGGGH-------------------HHHHHHHHHHT-
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCC----ccceEEEEEEEeCc-------------------hhHHHHHHHhCC
Confidence 5788888899999999988888888887765 33788888775443 235789999999
Q ss_pred C-ceeeEEEECCCCcEEec
Q 018332 250 K-GIPALVLIGPDGKTIST 267 (358)
Q Consensus 250 ~-~~P~~~lid~~G~v~~~ 267 (358)
. .-|.+++| ++|++++.
T Consensus 76 ~HeSPQ~ili-~~g~~v~~ 93 (105)
T PF11009_consen 76 KHESPQVILI-KNGKVVWH 93 (105)
T ss_dssp ---SSEEEEE-ETTEEEEE
T ss_pred CcCCCcEEEE-ECCEEEEE
Confidence 6 57999999 99999865
No 340
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.06 E-value=0.012 Score=47.58 Aligned_cols=41 Identities=27% Similarity=0.515 Sum_probs=32.5
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEe
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~ 85 (358)
.++++++.|+.++||+|+++.|.+.++..++. ++.+++...
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP----DVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEEeC
Confidence 47899999999999999999999988776542 255666544
No 341
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.04 E-value=0.023 Score=40.68 Aligned_cols=63 Identities=19% Similarity=0.347 Sum_probs=40.9
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
.+.-++.|+.+||++|......|.+ .++.+..+.++.+.+ ...+.+..|.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~----------~gi~y~~idi~~~~~--------------------~~~~~~~~g~ 55 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE----------KGYDFEEIPLGNDAR--------------------GRSLRAVTGA 55 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH----------cCCCcEEEECCCChH--------------------HHHHHHHHCC
Confidence 3444667999999999988877753 234444566665431 2345556788
Q ss_pred CceeeEEEECCCCcEE
Q 018332 250 KGIPALVLIGPDGKTI 265 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~ 265 (358)
..+|.+++ +|+.+
T Consensus 56 ~~vP~i~i---~g~~i 68 (79)
T TIGR02190 56 TTVPQVFI---GGKLI 68 (79)
T ss_pred CCcCeEEE---CCEEE
Confidence 99999964 45543
No 342
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.03 E-value=0.015 Score=42.44 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=38.0
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC--CCc
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN--IKG 251 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~ 251 (358)
++.|..+|||+|.+....|.++..++ .++.+..+.++.+... ...+.+.++ ...
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-----~~i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~t 57 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-----ADFEFRYIDIHAEGIS-------------------KADLEKTVGKPVET 57 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-----CCCcEEEEECCCCHHH-------------------HHHHHHHhCCCCCC
Confidence 56788999999999888887764332 2345555666543211 234555555 378
Q ss_pred eeeEEE
Q 018332 252 IPALVL 257 (358)
Q Consensus 252 ~P~~~l 257 (358)
+|.+++
T Consensus 58 VP~ifi 63 (86)
T TIGR02183 58 VPQIFV 63 (86)
T ss_pred cCeEEE
Confidence 999853
No 343
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=96.03 E-value=0.11 Score=42.10 Aligned_cols=120 Identities=11% Similarity=0.194 Sum_probs=69.8
Q ss_pred ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHH-hhcccCCceEEEEE-eCCCCH--------HHHHHhhhcCCc
Q 018332 161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE-LKTTANHCFEVVLV-STDRDH--------KEFDLNHSIMPW 230 (358)
Q Consensus 161 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~-~~~~~~~~~~vv~v-~~d~~~--------~~~~~~~~~~~~ 230 (358)
++.+...+.||+-+|...|-.-..=..-.|.+..+.+. |.. ++++...| +.|... ...++.-+.+||
T Consensus 28 ~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~---d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~ 104 (160)
T PF09695_consen 28 QPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPH---DKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPW 104 (160)
T ss_pred cccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCc---cceeEEEEEecccccccchHHHHHHHHHhhhhCCC
Confidence 34455678899988877765432222223444444443 443 66776664 555321 223333335666
Q ss_pred cccccCchhHHHHHHHcCCCc-eeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHH
Q 018332 231 LAIPYEDRARQDLCRIFNIKG-IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK 296 (358)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~v~~-~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~ 296 (358)
-.+-. |.+..+.+.|++.. --.++++|++|+|++.. .| ..+++.+++..+.++
T Consensus 105 s~~vl--D~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k-------~G----~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 105 SQFVL--DSNGVVRKAWQLQEESSAIIVLDKQGKVQFVK-------EG----ALSPAEVQQVIALLK 158 (160)
T ss_pred cEEEE--cCCCceeccccCCCCCceEEEEcCCccEEEEE-------CC----CCCHHHHHHHHHHHh
Confidence 55443 33456777888754 35688999999999883 44 345666666655544
No 344
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.01 E-value=0.0081 Score=53.14 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=42.2
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
-.+.++.++.-|++||.+.|++|.++.|.+..+++++ | ++++.||+|..
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---g--i~v~~VS~DG~ 191 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---G--ISVIPISVDGT 191 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---C--CeEEEEecCCC
Confidence 3455566789999999999999999999999999987 3 88999999964
No 345
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.01 E-value=0.022 Score=47.75 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=58.1
Q ss_pred cchhhHhhhhc-cCCceecCCCceeeecccCCcE-EEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018332 140 GGKLEQLLAIE-GRDYVLSRDHRKITVSELAGKT-IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD 217 (358)
Q Consensus 140 ~~~l~~~~~~~-~p~f~l~~~g~~~~l~~~~~k~-vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~ 217 (358)
...+..++... .|-+. ..+...+..---.+++ +++.|..............|..++++++ ..+.++++..+..
T Consensus 64 ~~~l~~fI~~~~~P~v~-~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~~f~~~d~~~~ 138 (184)
T PF13848_consen 64 PEELKKFIKKNSFPLVP-ELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFK----GKINFVYVDADDF 138 (184)
T ss_dssp HHHHHHHHHHHSSTSCE-EESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT----TTSEEEEEETTTT
T ss_pred HHHHHHHHHHhcccccc-ccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC----CeEEEEEeehHHh
Confidence 34455555443 33333 3444332222223444 7777765444445666667777777776 5677777777632
Q ss_pred HHHHHHhhhcCCccccccCchhHHHHHHHcCCC--ceeeEEEECCCCcE
Q 018332 218 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGKT 264 (358)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~v 264 (358)
..+.+.||+. .+|++++++.....
T Consensus 139 -----------------------~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 139 -----------------------PRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp -----------------------HHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred -----------------------HHHHHHcCCCCccCCEEEEEECCCCc
Confidence 5677899998 89999999855443
No 346
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.00 E-value=0.0075 Score=53.04 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=41.2
Q ss_pred ecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018332 36 PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (358)
Q Consensus 36 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~ 87 (358)
.+.++.+++-|++||.+.|++|.++.|.+..+++++. ++++.||+|.
T Consensus 137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-----~~v~~VS~DG 183 (248)
T PRK13703 137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-----LSVIPVSVDG 183 (248)
T ss_pred HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCC
Confidence 3555667899999999999999999999999999873 7899999995
No 347
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.99 E-value=0.021 Score=44.24 Aligned_cols=44 Identities=18% Similarity=0.616 Sum_probs=31.9
Q ss_pred CCCCEEEEEEeCC-------CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 40 CGGKTICLFFSAN-------WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 40 ~~gk~vlv~F~a~-------wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
..|++++|.|+++ |||.|..-.|.+.++.....+. ..+|.+.+.
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~---~~lv~v~VG 67 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPEN---ARLVYVEVG 67 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STT---EEEEEEE--
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCC---ceEEEEEcC
Confidence 4578999999965 9999999999999887764332 667777664
No 348
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.022 Score=43.42 Aligned_cols=44 Identities=20% Similarity=0.555 Sum_probs=33.7
Q ss_pred CCCEEEEEEeCC--------CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018332 41 GGKTICLFFSAN--------WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (358)
Q Consensus 41 ~gk~vlv~F~a~--------wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~ 87 (358)
+|+.++++|+++ |||.|.+-.|.+.++-+.. ..+..+|.+.+..
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a---p~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA---PEDVHFVHVYVGN 75 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC---CCceEEEEEEecC
Confidence 578899999975 9999999999998876633 3336677776653
No 349
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.71 E-value=0.054 Score=38.04 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=37.8
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC-ce
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-GI 252 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~ 252 (358)
+..|+.+|||+|......|++ .++.+-.+.++.+.+. ...+.+..+.. ++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~----------~~i~~~~i~i~~~~~~-------------------~~~~~~~~~~~~~v 52 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK----------KGVDYEEIDVDGDPAL-------------------REEMINRSGGRRTV 52 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH----------CCCcEEEEECCCCHHH-------------------HHHHHHHhCCCCcc
Confidence 457889999999988777654 2344555666654321 23455566766 89
Q ss_pred eeEEEECCCCcEE
Q 018332 253 PALVLIGPDGKTI 265 (358)
Q Consensus 253 P~~~lid~~G~v~ 265 (358)
|.++ + +|+.+
T Consensus 53 P~v~-i--~g~~i 62 (75)
T cd03418 53 PQIF-I--GDVHI 62 (75)
T ss_pred CEEE-E--CCEEE
Confidence 9774 4 34444
No 350
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.65 E-value=0.036 Score=39.51 Aligned_cols=54 Identities=15% Similarity=0.337 Sum_probs=35.0
Q ss_pred EEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceee
Q 018332 175 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA 254 (358)
Q Consensus 175 v~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 254 (358)
..|+.+|||+|......|++. ++.+-.+.++.+.+. ..++.+..|...+|+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~----------~i~~~~~di~~~~~~-------------------~~~~~~~~g~~~vP~ 52 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK----------GVTFTEIRVDGDPAL-------------------RDEMMQRSGRRTVPQ 52 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc----------CCCcEEEEecCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 568899999999888777642 233444455544311 245555668889999
Q ss_pred EEE
Q 018332 255 LVL 257 (358)
Q Consensus 255 ~~l 257 (358)
+++
T Consensus 53 i~i 55 (79)
T TIGR02181 53 IFI 55 (79)
T ss_pred EEE
Confidence 743
No 351
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.064 Score=53.22 Aligned_cols=109 Identities=21% Similarity=0.261 Sum_probs=64.5
Q ss_pred cccCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHH
Q 018332 166 SELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 242 (358)
Q Consensus 166 ~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (358)
..-.+||++|....+||..|.-+...= .++++-++. .+|-|.+|.+. -|..+..-..
T Consensus 39 A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~------~FV~IKVDREE--------------RPDvD~~Ym~ 98 (667)
T COG1331 39 AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE------NFVPVKVDREE--------------RPDVDSLYMN 98 (667)
T ss_pred HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh------CceeeeEChhh--------------ccCHHHHHHH
Confidence 344679999999999999999876321 223333332 48888888754 2333333344
Q ss_pred HHHHcC-CCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHH
Q 018332 243 LCRIFN-IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK 296 (358)
Q Consensus 243 l~~~~~-v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~ 296 (358)
+++... --++|-.+++-|+|+..+... ..-..+...-|...+.++.|...++
T Consensus 99 ~~q~~tG~GGWPLtVfLTPd~kPFfagT--Y~P~e~r~g~pGf~~lL~~i~~~W~ 151 (667)
T COG1331 99 ASQAITGQGGWPLTVFLTPDGKPFFAGT--YFPKEDRYGRPGFKQLLEAIRETWR 151 (667)
T ss_pred HHHHhccCCCCceeEEECCCCceeeeee--ecCCcccCCCcCHHHHHHHHHHHHH
Confidence 444443 347999999999999986532 1111111222344455555555554
No 352
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.50 E-value=0.032 Score=40.52 Aligned_cols=39 Identities=10% Similarity=0.270 Sum_probs=31.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
++.|+.+||++|++....|+++..++. + +.+..++++.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~--i~~~~idi~~~ 41 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--D--FDYRYVDIHAE 41 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--C--CcEEEEECCCC
Confidence 578999999999999999999887542 3 66888888765
No 353
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.46 E-value=0.049 Score=40.90 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=36.5
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
++.|..+|||+|.+....|.+. + -.+. .+.+|.+.+.. +....+.+..|...+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~----~----i~~~--~vdid~~~~~~----------------~~~~~l~~~tg~~tvP 63 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL----G----VNPA--VHEIDKEPAGK----------------DIENALSRLGCSPAVP 63 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----C----CCCE--EEEcCCCccHH----------------HHHHHHHHhcCCCCcC
Confidence 4568889999999877666442 2 3334 45555432110 0123455556788999
Q ss_pred eEEEECCCCcEE
Q 018332 254 ALVLIGPDGKTI 265 (358)
Q Consensus 254 ~~~lid~~G~v~ 265 (358)
.++ + +|+.+
T Consensus 64 ~Vf-i--~g~~i 72 (99)
T TIGR02189 64 AVF-V--GGKLV 72 (99)
T ss_pred eEE-E--CCEEE
Confidence 974 5 35443
No 354
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=95.41 E-value=0.0063 Score=54.74 Aligned_cols=32 Identities=34% Similarity=0.719 Sum_probs=29.2
Q ss_pred ceeecCcCC-CCcceEEEcCCCC-CCCCcccccC
Q 018332 322 AYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVEG 353 (358)
Q Consensus 322 ~~~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~~ 353 (358)
.-.||.|.. ...|-+|+|..|. |||+..|-.+
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~ 185 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAG 185 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhcC
Confidence 467999999 8999999999999 9999999655
No 355
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.40 E-value=0.083 Score=37.02 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=36.8
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
++.|..+||+.|+.....|++ .++.+..+.++.+.+. ..++.+..+-..+|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~----------~gi~~~~~di~~~~~~-------------------~~el~~~~g~~~vP 53 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE----------KGLPYVEINIDIFPER-------------------KAELEERTGSSVVP 53 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH----------CCCceEEEECCCCHHH-------------------HHHHHHHhCCCCcC
Confidence 346788999999988777664 3345556677654321 34566666778889
Q ss_pred eEEE
Q 018332 254 ALVL 257 (358)
Q Consensus 254 ~~~l 257 (358)
.+++
T Consensus 54 ~v~i 57 (73)
T cd03027 54 QIFF 57 (73)
T ss_pred EEEE
Confidence 8843
No 356
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=95.39 E-value=0.0055 Score=37.75 Aligned_cols=30 Identities=37% Similarity=0.845 Sum_probs=25.0
Q ss_pred eeecCcCCCCcceEEEcCCCC-CCCCcccccC
Q 018332 323 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVEG 353 (358)
Q Consensus 323 ~~C~~C~e~g~~~~~~~~~~~-~~~~~~~~~~ 353 (358)
|.|+.|... .|.+|+|..|+ |||...|-..
T Consensus 1 y~C~~C~~~-~~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 1 YTCNECKHH-VETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred CcCCCCCCc-CCCceECCCCcchhhHHHHhCC
Confidence 569999884 46999999997 9999999544
No 357
>PHA03050 glutaredoxin; Provisional
Probab=95.37 E-value=0.031 Score=42.73 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=38.3
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
++.|..+|||+|......|.+..-+. ..++++-|.-..+..+ ....+.+.-|-+.+|
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~-----~~~~~i~i~~~~~~~~------------------~~~~l~~~tG~~tVP 71 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR-----GAYEIVDIKEFKPENE------------------LRDYFEQITGGRTVP 71 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc-----CCcEEEECCCCCCCHH------------------HHHHHHHHcCCCCcC
Confidence 55689999999998777765542111 1344444432111111 135666677888999
Q ss_pred eEEEECCCCcEE
Q 018332 254 ALVLIGPDGKTI 265 (358)
Q Consensus 254 ~~~lid~~G~v~ 265 (358)
+++ | +|+.+
T Consensus 72 ~If-I--~g~~i 80 (108)
T PHA03050 72 RIF-F--GKTSI 80 (108)
T ss_pred EEE-E--CCEEE
Confidence 985 4 35554
No 358
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=95.34 E-value=0.099 Score=44.42 Aligned_cols=110 Identities=19% Similarity=0.385 Sum_probs=75.7
Q ss_pred cCCceecCCCceeeeccc-CCcEEEEE--E-----eccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018332 151 GRDYVLSRDHRKITVSEL-AGKTIGLY--F-----GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 222 (358)
Q Consensus 151 ~p~f~l~~~g~~~~l~~~-~~k~vlv~--F-----~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~ 222 (358)
..++.++....+++|.++ .|+..||. | |...|+-|...+..++.....+.+ .++.++.|+-. ..+++.
T Consensus 46 ~~~Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~---rd~tfa~vSra-P~~~i~ 121 (211)
T PF05988_consen 46 DKDYVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHA---RDTTFAVVSRA-PLEKIE 121 (211)
T ss_pred CCCeEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHh---CCceEEEEeCC-CHHHHH
Confidence 345666444445888886 45543332 2 246799999999999777777775 77888888755 567788
Q ss_pred HhhhcCCccccccCchhHHHHHHHcCC-----CceeeEEEECCCCcEE
Q 018332 223 LNHSIMPWLAIPYEDRARQDLCRIFNI-----KGIPALVLIGPDGKTI 265 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~v~ 265 (358)
.+.+.|+|. +|..+.....+...|++ ...|.+-+|=++|--|
T Consensus 122 afk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~V 168 (211)
T PF05988_consen 122 AFKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRV 168 (211)
T ss_pred HHHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEE
Confidence 888899997 88876666777778887 4667665554554433
No 359
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=95.20 E-value=0.012 Score=45.60 Aligned_cols=67 Identities=10% Similarity=0.185 Sum_probs=45.0
Q ss_pred eecccCCCCEEEEEEeCC----CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccce
Q 018332 35 VPLSSCGGKTICLFFSAN----WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIG 110 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~----wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~ 110 (358)
+..+.-++|+++|+|+++ ||..|+..... .++.+-++++ ++++.+|.+... +.+
T Consensus 10 l~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~-----fv~w~~dv~~~e----------------g~~ 67 (116)
T cd02991 10 LNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTR-----MLFWACSVAKPE----------------GYR 67 (116)
T ss_pred HHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcC-----EEEEEEecCChH----------------HHH
Confidence 555667899999999999 88888765421 2344444443 566666543221 357
Q ss_pred eeeccccCCCCcc
Q 018332 111 LIEDYGADAYPFT 123 (358)
Q Consensus 111 l~~~~gi~~~P~~ 123 (358)
++..+++.+||+.
T Consensus 68 la~~l~~~~~P~~ 80 (116)
T cd02991 68 VSQALRERTYPFL 80 (116)
T ss_pred HHHHhCCCCCCEE
Confidence 8889999999964
No 360
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.17 E-value=0.086 Score=36.80 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=37.5
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
++.|..+|||+|.+....|.+ .++.+..+.++.+.. ...+.+..|...+|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~----------~~i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP 52 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE----------NGISYEEIPLGKDIT--------------------GRSLRAVTGAMTVP 52 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----------cCCCcEEEECCCChh--------------------HHHHHHHhCCCCcC
Confidence 456888999999988776653 234445556654421 23455556889999
Q ss_pred eEEEECCCCcEE
Q 018332 254 ALVLIGPDGKTI 265 (358)
Q Consensus 254 ~~~lid~~G~v~ 265 (358)
.+ ++ +|+.+
T Consensus 53 ~i-fi--~g~~i 61 (72)
T cd03029 53 QV-FI--DGELI 61 (72)
T ss_pred eE-EE--CCEEE
Confidence 97 45 34443
No 361
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.15 E-value=0.033 Score=39.87 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=26.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
++.|+++|||+|+...+.|.++.. +++++-++.+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~ 37 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHED 37 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCC
Confidence 478899999999998888776433 255666665544
No 362
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=95.11 E-value=0.12 Score=39.80 Aligned_cols=63 Identities=17% Similarity=0.481 Sum_probs=50.9
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
..|.|+|-|.-.|-|.|.++-..|.+++....+ =..|..+.+|. .+.+.+.|+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn----fa~Iylvdide-----------------------V~~~~~~~~ 74 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN----FAVIYLVDIDE-----------------------VPDFVKMYE 74 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh----ceEEEEEecch-----------------------hhhhhhhhc
Confidence 358999999999999999999999999998863 23444455564 367888999
Q ss_pred CCceeeEEEE
Q 018332 249 IKGIPALVLI 258 (358)
Q Consensus 249 v~~~P~~~li 258 (358)
+...|++++|
T Consensus 75 l~~p~tvmfF 84 (142)
T KOG3414|consen 75 LYDPPTVMFF 84 (142)
T ss_pred ccCCceEEEE
Confidence 9999998877
No 363
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.11 E-value=0.066 Score=37.00 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=25.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~ 90 (358)
++.|+++||++|..+.+.+.+ .+ +++..++++.+..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~ 37 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPE 37 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHH
Confidence 478899999999998776654 23 5566677775543
No 364
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.09 E-value=0.066 Score=35.89 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=26.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~ 89 (358)
++.|+.+||++|++....| ++.+ +.+..++++.++
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~--i~y~~~dv~~~~ 35 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKG--IPYEEVDVDEDE 35 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTT--BEEEEEEGGGSH
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcC--CeeeEcccccch
Confidence 4678999999999977766 3344 678888888764
No 365
>PRK10638 glutaredoxin 3; Provisional
Probab=95.02 E-value=0.14 Score=36.90 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=38.1
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
+..|..+||++|......|.+. ++.+..+.++.+.+ ....+.+..+...+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~----------gi~y~~~dv~~~~~-------------------~~~~l~~~~g~~~vP 54 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK----------GVSFQEIPIDGDAA-------------------KREEMIKRSGRTTVP 54 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc----------CCCcEEEECCCCHH-------------------HHHHHHHHhCCCCcC
Confidence 4467789999999887777642 23344456665431 124555666888999
Q ss_pred eEEEECCCCcEE
Q 018332 254 ALVLIGPDGKTI 265 (358)
Q Consensus 254 ~~~lid~~G~v~ 265 (358)
++++ +|+.+
T Consensus 55 ~i~~---~g~~i 63 (83)
T PRK10638 55 QIFI---DAQHI 63 (83)
T ss_pred EEEE---CCEEE
Confidence 7744 46655
No 366
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.95 E-value=0.11 Score=38.18 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=39.4
Q ss_pred CCcEEEEEEec----cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018332 169 AGKTIGLYFGA----HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 244 (358)
Q Consensus 169 ~~k~vlv~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (358)
++++|+|+--+ +|||+|......|.+. ++.+-.+.++.+.+ ....+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----------~i~y~~idv~~~~~-------------------~~~~l~ 56 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL----------GVDFGTFDILEDEE-------------------VRQGLK 56 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----------CCCeEEEEcCCCHH-------------------HHHHHH
Confidence 44566665433 7999999877766553 23344455554421 135666
Q ss_pred HHcCCCceeeEEEECCCCcEE
Q 018332 245 RIFNIKGIPALVLIGPDGKTI 265 (358)
Q Consensus 245 ~~~~v~~~P~~~lid~~G~v~ 265 (358)
+..|...+|.++ + +|+.+
T Consensus 57 ~~~g~~tvP~vf-i--~g~~i 74 (90)
T cd03028 57 EYSNWPTFPQLY-V--NGELV 74 (90)
T ss_pred HHhCCCCCCEEE-E--CCEEE
Confidence 667888999974 4 45543
No 367
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.88 E-value=0.11 Score=42.42 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=39.8
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
..+=.-..+++++.|+...||||..+.+.+.++.+++-+.| .+.+++..+...
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~~~ 57 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVPLD 57 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESSSS
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEcccc
Confidence 33444567999999999999999999999999988883333 378888876543
No 368
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.79 E-value=0.062 Score=43.38 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=32.1
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~ 214 (358)
.++++++.|+.++||+|..+.+.+.++..++. ++.+++..+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-----~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-----DVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-----CceEEEEeC
Confidence 36889999999999999999999998877653 345555443
No 369
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.074 Score=36.86 Aligned_cols=70 Identities=24% Similarity=0.395 Sum_probs=44.9
Q ss_pred EEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhh---cCCccccccCchhHHHHHHHcCCCc
Q 018332 175 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS---IMPWLAIPYEDRARQDLCRIFNIKG 251 (358)
Q Consensus 175 v~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~~ 251 (358)
+.|++..||.|......|.++.- +++ +|.+-.+-..+++++. +++ .-.-.+..|--+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v--------~yd--~VeIt~Sm~NlKrFl~lRDs~~----------~Fd~vk~~gyiG 64 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNV--------DYD--FVEITESMANLKRFLHLRDSRP----------EFDEVKSNGYIG 64 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCC--------Cce--eeehhhhhhhHHHHHhhhccch----------hHHhhhhcCccc
Confidence 46899999999887777765422 223 4455555555555554 333 123346678889
Q ss_pred eeeEEEECCCCcEEe
Q 018332 252 IPALVLIGPDGKTIS 266 (358)
Q Consensus 252 ~P~~~lid~~G~v~~ 266 (358)
+|.+.+ .+|+++.
T Consensus 65 IPall~--~d~~vVl 77 (85)
T COG4545 65 IPALLT--DDGKVVL 77 (85)
T ss_pred ceEEEe--CCCcEEE
Confidence 999865 6787764
No 370
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.70 E-value=0.13 Score=36.00 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=34.4
Q ss_pred EEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceee
Q 018332 175 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA 254 (358)
Q Consensus 175 v~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 254 (358)
..|..++|++|+.....|.+ .++.+-.+.++.+.+. ...+ +..|...+|.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~----------~~i~~~~~di~~~~~~-------------------~~~~-~~~g~~~vP~ 51 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE----------HGIAFEEINIDEQPEA-------------------IDYV-KAQGFRQVPV 51 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH----------CCCceEEEECCCCHHH-------------------HHHH-HHcCCcccCE
Confidence 46788999999988877753 3345556666655321 1223 3358889999
Q ss_pred EEE
Q 018332 255 LVL 257 (358)
Q Consensus 255 ~~l 257 (358)
+++
T Consensus 52 v~~ 54 (72)
T TIGR02194 52 IVA 54 (72)
T ss_pred EEE
Confidence 754
No 371
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.68 E-value=0.064 Score=45.80 Aligned_cols=32 Identities=19% Similarity=0.439 Sum_probs=27.0
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhHHHHH
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQ 66 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~ 66 (358)
+....-.++..++.|+-+.||+|+++.+.+.+
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 44444457999999999999999999998876
No 372
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.66 E-value=0.17 Score=36.42 Aligned_cols=54 Identities=15% Similarity=0.353 Sum_probs=35.4
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
+..|..+||++|......|.+ .++.+-.+.++.+.+. ...+ +..|...+|
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~----------~gI~~~~idi~~~~~~-------------------~~~~-~~~g~~~vP 52 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES----------RGFDFEMINVDRVPEA-------------------AETL-RAQGFRQLP 52 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH----------CCCceEEEECCCCHHH-------------------HHHH-HHcCCCCcC
Confidence 456889999999987766633 4456666777755321 1222 335788999
Q ss_pred eEEE
Q 018332 254 ALVL 257 (358)
Q Consensus 254 ~~~l 257 (358)
++++
T Consensus 53 vv~i 56 (81)
T PRK10329 53 VVIA 56 (81)
T ss_pred EEEE
Confidence 9864
No 373
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.63 E-value=0.16 Score=38.00 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=38.4
Q ss_pred CcEEEEEEe----ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018332 170 GKTIGLYFG----AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 245 (358)
Q Consensus 170 ~k~vlv~F~----a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (358)
.+.|+|+-. .+|||+|......|.+. ++.+..+.++.+.+ ....+.+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------~i~~~~~di~~~~~-------------------~~~~l~~ 61 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC----------GVPFAYVNVLEDPE-------------------IRQGIKE 61 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc----------CCCEEEEECCCCHH-------------------HHHHHHH
Confidence 355666544 38999999877766542 23344556554431 1245556
Q ss_pred HcCCCceeeEEEECCCCcEE
Q 018332 246 IFNIKGIPALVLIGPDGKTI 265 (358)
Q Consensus 246 ~~~v~~~P~~~lid~~G~v~ 265 (358)
..|...+|.++ + +|+.+
T Consensus 62 ~tg~~tvP~vf-i--~g~~i 78 (97)
T TIGR00365 62 YSNWPTIPQLY-V--KGEFV 78 (97)
T ss_pred HhCCCCCCEEE-E--CCEEE
Confidence 66778899886 4 35543
No 374
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.59 E-value=0.12 Score=42.16 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=39.7
Q ss_pred eeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018332 163 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 215 (358)
Q Consensus 163 ~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d 215 (358)
..+.+-.++++|+.|+...||+|..+.+.+.++.+++- ...++.+++..+.
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i--~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYI--DPGKVKFVFRPVP 55 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT--TTTTEEEEEEESS
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhcc--CCCceEEEEEEcc
Confidence 34455567899999999999999999999999999982 1267888888773
No 375
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.11 Score=41.77 Aligned_cols=48 Identities=23% Similarity=0.462 Sum_probs=36.9
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCC
Q 018332 38 SSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
..-++|+.++.|-.+.|+.|.++...+ .++.+-+..+ +.++.++....
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~s 88 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYS 88 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccC
Confidence 335689999999999999999988766 4466666666 77777776543
No 376
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.26 E-value=0.022 Score=48.78 Aligned_cols=69 Identities=22% Similarity=0.414 Sum_probs=50.8
Q ss_pred cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018332 171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 250 (358)
Q Consensus 171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 250 (358)
--.++.|+++|||.|....|.|.+++.--.+ -++.|-.|.+..+ ..+.-+|-+.
T Consensus 40 gewmi~~~ap~~psc~~~~~~~~~~a~~s~d---L~v~va~VDvt~n-----------------------pgLsGRF~vt 93 (248)
T KOG0913|consen 40 GEWMIEFGAPWCPSCSDLIPHLENFATVSLD---LGVKVAKVDVTTN-----------------------PGLSGRFLVT 93 (248)
T ss_pred hHHHHHhcCCCCccccchHHHHhccCCccCC---CceeEEEEEEEec-----------------------cccceeeEEE
Confidence 3577899999999999999999887654332 4555555544332 3556678889
Q ss_pred ceeeEEEECCCCcEEe
Q 018332 251 GIPALVLIGPDGKTIS 266 (358)
Q Consensus 251 ~~P~~~lid~~G~v~~ 266 (358)
..|++|-+ ++|..+.
T Consensus 94 aLptIYHv-kDGeFrr 108 (248)
T KOG0913|consen 94 ALPTIYHV-KDGEFRR 108 (248)
T ss_pred ecceEEEe-ecccccc
Confidence 99999999 8888753
No 377
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.11 E-value=0.072 Score=44.39 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=29.4
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHh
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLR 72 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~ 72 (358)
.+++.+++|+-+.||||+.+.+.+.++.+++.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~ 45 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP 45 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC
Confidence 68999999999999999999999999888773
No 378
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=93.84 E-value=0.079 Score=37.86 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=26.7
Q ss_pred CEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018332 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (358)
Q Consensus 43 k~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~ 89 (358)
+.-++.|+.+||++|++....|++ .| +.+..++++.+.
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~-------~g--i~y~~idi~~~~ 44 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKE-------KG--YDFEEIPLGNDA 44 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHH-------cC--CCcEEEECCCCh
Confidence 444678999999999998776653 34 555567776553
No 379
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=93.73 E-value=0.82 Score=40.57 Aligned_cols=132 Identities=11% Similarity=0.095 Sum_probs=72.1
Q ss_pred cCCcee-cCCCceeeecc-cCCcEEEEEEeccCCcccHhhHHHH-HHHHHHhhcccCCceEEEEEeCCCCHH-HHHH-hh
Q 018332 151 GRDYVL-SRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQL-IEVYNELKTTANHCFEVVLVSTDRDHK-EFDL-NH 225 (358)
Q Consensus 151 ~p~f~l-~~~g~~~~l~~-~~~k~vlv~F~a~wC~~C~~~~~~l-~~l~~~~~~~~~~~~~vv~v~~d~~~~-~~~~-~~ 225 (358)
-|++.. +++|+.+++.+ ++||+.||..+++- .-..+...+ .....+|.......+++|-|++..+.- .+.. .+
T Consensus 101 FP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~--~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~~ 178 (252)
T PF05176_consen 101 FPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSA--WGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKLF 178 (252)
T ss_pred CCCCccccCCCCCcccccccCCceEEEEEeehH--HHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHH
Confidence 456655 67777666544 57887666554431 122222222 234445543122379999999876541 2221 11
Q ss_pred h-c----CC---ccccccCch--hHHHHHHHcCCC--ceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHH
Q 018332 226 S-I----MP---WLAIPYEDR--ARQDLCRIFNIK--GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIET 293 (358)
Q Consensus 226 ~-~----~~---~~~~~~~~~--~~~~l~~~~~v~--~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~ 293 (358)
. + .| |..+-+..+ ....+.+.+++. -+..+||+|++|+|+..+ .| +.+++.++.|.+
T Consensus 179 ~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWag-------sG----~At~~E~~~L~k 247 (252)
T PF05176_consen 179 MGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAG-------SG----PATPEELESLWK 247 (252)
T ss_pred hhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCc-------cC----CCCHHHHHHHHH
Confidence 1 1 11 211111121 256788888885 467899999999999773 22 345565666654
Q ss_pred HH
Q 018332 294 AL 295 (358)
Q Consensus 294 ~l 295 (358)
.+
T Consensus 248 ~~ 249 (252)
T PF05176_consen 248 CV 249 (252)
T ss_pred HH
Confidence 43
No 380
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=93.68 E-value=0.15 Score=36.18 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=33.7
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcc
Q 018332 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT 123 (358)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~ 123 (358)
|.+++++|++|..+...+.++...+. +++-.++. .+.+ ++ .+||+...|+.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~-~~~~-------------------~~-~~ygv~~vPal 53 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDI-EDFE-------------------EI-EKYGVMSVPAL 53 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEET-TTHH-------------------HH-HHTT-SSSSEE
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEc-cCHH-------------------HH-HHcCCCCCCEE
Confidence 34468889999999998888877763 34444444 2332 23 77888888853
No 381
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.47 E-value=0.19 Score=34.42 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=26.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~ 90 (358)
++.|+++||++|+...+.|.+. + +.+..++++.+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~--i~~~~~di~~~~~ 37 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------G--IEFEEIDILEDGE 37 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------C--CcEEEEECCCCHH
Confidence 4678899999999988877653 2 4566777776553
No 382
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.03 E-value=0.15 Score=42.60 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=54.9
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
+..-|++.||-+.-..|+.+-..|..|++.+-. ..++-|+... ..-+..+++
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-----TrFikvnae~-----------------------~PFlv~kL~ 134 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-----TRFIKVNAEK-----------------------APFLVTKLN 134 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc-----ceEEEEeccc-----------------------Cceeeeeee
Confidence 446789999999988999999999999988743 3455554443 256788999
Q ss_pred CCceeeEEEECCCCcEEec
Q 018332 249 IKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 249 v~~~P~~~lid~~G~v~~~ 267 (358)
|+-+|++.++ .+|+.+.+
T Consensus 135 IkVLP~v~l~-k~g~~~D~ 152 (211)
T KOG1672|consen 135 IKVLPTVALF-KNGKTVDY 152 (211)
T ss_pred eeEeeeEEEE-EcCEEEEE
Confidence 9999999999 88876554
No 383
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.53 Score=33.72 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.1
Q ss_pred EEEEeccCCcccHhhHHHHH
Q 018332 174 GLYFGAHWCPPCRSFTSQLI 193 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~ 193 (358)
+..|..++||+|......|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45688899999998777665
No 384
>PRK10329 glutaredoxin-like protein; Provisional
Probab=92.49 E-value=0.23 Score=35.72 Aligned_cols=37 Identities=19% Similarity=0.431 Sum_probs=26.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG 91 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~ 91 (358)
+..|..+||++|.+....|+ +.| +.+..++++.+.+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~-------~~g--I~~~~idi~~~~~~ 39 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAME-------SRG--FDFEMINVDRVPEA 39 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHH-------HCC--CceEEEECCCCHHH
Confidence 45788999999999776664 345 66777788766543
No 385
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=92.49 E-value=0.097 Score=34.17 Aligned_cols=35 Identities=26% Similarity=0.558 Sum_probs=28.4
Q ss_pred CCceeecCcCCCC---cceEEEcCCCCCCCCcccccCc
Q 018332 320 AKAYVCDCCKMRG---RFWAFSCDVCNYDLHPKCVEGI 354 (358)
Q Consensus 320 ~~~~~C~~C~e~g---~~~~~~~~~~~~~~~~~~~~~~ 354 (358)
..+..|+.|++.. ..-.|+|..|++-+|.+|....
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence 5677899999976 6779999999999999997654
No 386
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.08 E-value=0.5 Score=32.95 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=25.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~ 90 (358)
++.|+.+||++|++....|++ .+ +.+..++++.+..
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~ 38 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPE 38 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHH
Confidence 456888999999997766653 44 5566777776554
No 387
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=91.62 E-value=0.35 Score=35.14 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=26.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
++.|+.+|||+|.+....|+++..+.. .+.+..++++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~ 40 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAE 40 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCC
Confidence 567889999999998887776543221 255666666643
No 388
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=91.58 E-value=0.17 Score=32.38 Aligned_cols=35 Identities=26% Similarity=0.595 Sum_probs=29.5
Q ss_pred CceeecCcCCCCcc---eEEEcCCCCCCCCcccccCcc
Q 018332 321 KAYVCDCCKMRGRF---WAFSCDVCNYDLHPKCVEGIN 355 (358)
Q Consensus 321 ~~~~C~~C~e~g~~---~~~~~~~~~~~~~~~~~~~~~ 355 (358)
.+..|..|.+...+ ..|+|..|++-.|++|+....
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~ 47 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP 47 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence 45679999997665 899999999999999987643
No 389
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=91.58 E-value=0.29 Score=36.72 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=22.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
++.|..+|||+|.+....|.+ .+ +.+..+++|.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~-------~~--i~~~~vdid~~ 43 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT-------LG--VNPAVHEIDKE 43 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC--CCCEEEEcCCC
Confidence 467889999999997765543 34 33445666644
No 390
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=1.1 Score=35.88 Aligned_cols=116 Identities=15% Similarity=0.263 Sum_probs=70.0
Q ss_pred hhhccCCcee-cC--C----C-ceeeecc-cCCcEEEE-EEeccCCcccHh-hHHHHHHHHHHhhcccCCce-EEEEEeC
Q 018332 147 LAIEGRDYVL-SR--D----H-RKITVSE-LAGKTIGL-YFGAHWCPPCRS-FTSQLIEVYNELKTTANHCF-EVVLVST 214 (358)
Q Consensus 147 ~~~~~p~f~l-~~--~----g-~~~~l~~-~~~k~vlv-~F~a~wC~~C~~-~~~~l~~l~~~~~~~~~~~~-~vv~v~~ 214 (358)
+|++.|..++ .. + | ..++..+ ++||.|+| -.-+...|.|.. .+|.+.+++++++. .++ +|+.|++
T Consensus 5 vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~---kGVD~I~cVSV 81 (165)
T COG0678 5 VGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKA---KGVDEIYCVSV 81 (165)
T ss_pred cCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHH---cCCceEEEEEe
Confidence 4666776665 22 1 1 1222233 35665544 344556777866 79999999999986 333 4566777
Q ss_pred CCCH--HHHHHhhhcCCccccccCchhHHHHHHHcC-----------CCceeeEEEECCCCcEEecC
Q 018332 215 DRDH--KEFDLNHSIMPWLAIPYEDRARQDLCRIFN-----------IKGIPALVLIGPDGKTISTN 268 (358)
Q Consensus 215 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------v~~~P~~~lid~~G~v~~~~ 268 (358)
++.- ..|.+...... ++.+..|.+.++.+.+| +++.....++ .||.|..-.
T Consensus 82 ND~FVm~AWak~~g~~~--~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 82 NDAFVMNAWAKSQGGEG--NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred CcHHHHHHHHHhcCCCc--cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence 6432 45555554432 45555555677777654 4566667777 888887664
No 391
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=91.53 E-value=0.29 Score=35.62 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=28.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
+..|+.+.||+|..+.|.+.++...... ++++....+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccc
Confidence 3689999999999999999988743333 2666666544
No 392
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=0.87 Score=34.43 Aligned_cols=65 Identities=25% Similarity=0.448 Sum_probs=37.0
Q ss_pred cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018332 171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 250 (358)
Q Consensus 171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 250 (358)
++| |.|..+||++|......|.. +. ....|+-+.-+.+..+++ ..+.+.-+-+
T Consensus 14 ~~V-VifSKs~C~~c~~~k~ll~~----~~----v~~~vvELD~~~~g~eiq------------------~~l~~~tg~~ 66 (104)
T KOG1752|consen 14 NPV-VIFSKSSCPYCHRAKELLSD----LG----VNPKVVELDEDEDGSEIQ------------------KALKKLTGQR 66 (104)
T ss_pred CCE-EEEECCcCchHHHHHHHHHh----CC----CCCEEEEccCCCCcHHHH------------------HHHHHhcCCC
Confidence 344 45889999999984444433 33 344455444443332222 3344444566
Q ss_pred ceeeEEEECCCCcEE
Q 018332 251 GIPALVLIGPDGKTI 265 (358)
Q Consensus 251 ~~P~~~lid~~G~v~ 265 (358)
.+|.+|+ +|+-+
T Consensus 67 tvP~vFI---~Gk~i 78 (104)
T KOG1752|consen 67 TVPNVFI---GGKFI 78 (104)
T ss_pred CCCEEEE---CCEEE
Confidence 8898876 56665
No 393
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.47 E-value=0.88 Score=45.52 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=50.1
Q ss_pred ccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018332 167 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI 246 (358)
Q Consensus 167 ~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (358)
.+++.+.++.|+...|..|......|+++.. +. +++++.....+. ...++++
T Consensus 363 ~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s----~~i~~~~~~~~~-----------------------~~~~~~~ 414 (555)
T TIGR03143 363 RLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LS----EKLNSEAVNRGE-----------------------EPESETL 414 (555)
T ss_pred hcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cC----CcEEEEEecccc-----------------------chhhHhh
Confidence 4566778889998888889877776666653 22 556665554433 3678889
Q ss_pred cCCCceeeEEEECCCCc
Q 018332 247 FNIKGIPALVLIGPDGK 263 (358)
Q Consensus 247 ~~v~~~P~~~lid~~G~ 263 (358)
|++...|++.+++.+|+
T Consensus 415 ~~v~~~P~~~i~~~~~~ 431 (555)
T TIGR03143 415 PKITKLPTVALLDDDGN 431 (555)
T ss_pred cCCCcCCEEEEEeCCCc
Confidence 99999999999976654
No 394
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=91.38 E-value=0.71 Score=37.89 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=55.7
Q ss_pred ccccCcccccCCC-CceecccCCCCEEEEEEe--CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 20 LASEGVEFLLSRQ-GKVPLSSCGGKTICLFFS--ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 20 l~~~~~~~l~~~~-g~v~l~~~~gk~vlv~F~--a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
|....++|-.+++ |.+.+-++-|.-+.|.|. |..-|.|....-.+++++-++.+++ +.++..+||.-
T Consensus 8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~d~v 77 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSVDDV 77 (224)
T ss_pred ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeehhhH
Confidence 3445567744444 449999999999999999 7788999999999999999999988 89999999953
No 395
>PRK10824 glutaredoxin-4; Provisional
Probab=91.09 E-value=0.26 Score=38.05 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=37.6
Q ss_pred CcEEEEEEec----cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018332 170 GKTIGLYFGA----HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR 245 (358)
Q Consensus 170 ~k~vlv~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (358)
...|+|+--+ +|||+|.+....|.++ . ..+.+ +.++.+.+ . ...+.+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~----~----i~~~~--idi~~d~~-~------------------~~~l~~ 64 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC----G----ERFAY--VDILQNPD-I------------------RAELPK 64 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc----C----CCceE--EEecCCHH-H------------------HHHHHH
Confidence 4556665543 6999999887776554 2 22333 44454431 1 234555
Q ss_pred HcCCCceeeEEEECCCCcEE
Q 018332 246 IFNIKGIPALVLIGPDGKTI 265 (358)
Q Consensus 246 ~~~v~~~P~~~lid~~G~v~ 265 (358)
.-|...+|.+++ +|+-+
T Consensus 65 ~sg~~TVPQIFI---~G~~I 81 (115)
T PRK10824 65 YANWPTFPQLWV---DGELV 81 (115)
T ss_pred HhCCCCCCeEEE---CCEEE
Confidence 557788888775 55554
No 396
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.81 E-value=0.43 Score=40.59 Aligned_cols=93 Identities=24% Similarity=0.441 Sum_probs=62.8
Q ss_pred CCceecCCCceeeeccc-CCcEEEEE---E----eccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHH
Q 018332 152 RDYVLSRDHRKITVSEL-AGKTIGLY---F----GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL 223 (358)
Q Consensus 152 p~f~l~~~g~~~~l~~~-~~k~vlv~---F----~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 223 (358)
.++.++....+.+|.+| .|+..||. + |...|+-|...+..+.-....+.. .++.+++|+-- ..+++..
T Consensus 53 K~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~---~dv~lv~VsRA-Pl~~l~~ 128 (247)
T COG4312 53 KDYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEH---HDVTLVAVSRA-PLEELVA 128 (247)
T ss_pred ceeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhh---cCceEEEEecC-cHHHHHH
Confidence 34566444446788776 45544332 2 344799999999988777777765 77888888654 4567777
Q ss_pred hhhcCCccccccCchhHHHHHHHcCC
Q 018332 224 NHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
+-+.|+|. +|..+.....+...|++
T Consensus 129 ~k~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 129 YKRRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred HHHhcCCc-ceeEeccCccccccccc
Confidence 88888887 77766555666666655
No 397
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=90.65 E-value=0.89 Score=31.67 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=25.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~ 90 (358)
++.|+.+||++|.+....|++ .+ +.+..++++.+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~~ 37 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDPA 37 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCHH
Confidence 467889999999997776654 34 5566677776543
No 398
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=90.62 E-value=0.6 Score=33.05 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=25.2
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018332 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG 91 (358)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~ 91 (358)
+.|+.+|||+|.+....|++ .+ +.+..++++.+...
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~--i~~~~~di~~~~~~ 37 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KG--VTFTEIRVDGDPAL 37 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cC--CCcEEEEecCCHHH
Confidence 56889999999998877764 33 44555666665543
No 399
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=90.62 E-value=1.4 Score=34.46 Aligned_cols=62 Identities=21% Similarity=0.482 Sum_probs=45.9
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
..|.|+|-|...|-+.|.++-..|.+++++.+ .-..|..+.++.- +.+.+.|.
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~----~~a~IY~vDi~~V-----------------------pdfn~~ye 71 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK----NFAVIYLVDIDEV-----------------------PDFNQMYE 71 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT----TTEEEEEEETTTT-----------------------HCCHHHTT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhh----cceEEEEEEcccc-----------------------hhhhcccc
Confidence 46899999999999999999999999999886 3345555666653 45677888
Q ss_pred CCceeeEEEE
Q 018332 249 IKGIPALVLI 258 (358)
Q Consensus 249 v~~~P~~~li 258 (358)
+. .|..++|
T Consensus 72 l~-dP~tvmF 80 (133)
T PF02966_consen 72 LY-DPCTVMF 80 (133)
T ss_dssp S--SSEEEEE
T ss_pred cC-CCeEEEE
Confidence 88 6754333
No 400
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=90.18 E-value=0.32 Score=41.83 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=26.9
Q ss_pred CCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHh
Q 018332 40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLR 72 (358)
Q Consensus 40 ~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~ 72 (358)
..|++-+++|+...||||..+.|.+ ..+.+.+.
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~ 70 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP 70 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCC
Confidence 4688899999999999999999876 55555553
No 401
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=90.08 E-value=0.56 Score=33.65 Aligned_cols=56 Identities=29% Similarity=0.373 Sum_probs=42.2
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP 253 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 253 (358)
++.|..+.|+.|......|.++... ..+.+..|.++.+ ..+.++|+. .+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~------~~~~l~~vDI~~d-----------------------~~l~~~Y~~-~IP 51 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE------FPFELEEVDIDED-----------------------PELFEKYGY-RIP 51 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT------STCEEEEEETTTT-----------------------HHHHHHSCT-STS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh------cCceEEEEECCCC-----------------------HHHHHHhcC-CCC
Confidence 6788999999999888777664332 4578989999865 568889995 799
Q ss_pred eEEEEC
Q 018332 254 ALVLIG 259 (358)
Q Consensus 254 ~~~lid 259 (358)
.+.+-+
T Consensus 52 Vl~~~~ 57 (81)
T PF05768_consen 52 VLHIDG 57 (81)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 976653
No 402
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=90.04 E-value=0.79 Score=31.87 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=26.8
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHH
Q 018332 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93 (358)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~ 93 (358)
..|..++|++|++....|++ .+ +.+..++++.+.....
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~~~~~ 39 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQPEAID 39 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCHHHHH
Confidence 46778999999998776653 34 5667778776654433
No 403
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=89.98 E-value=0.23 Score=31.23 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=26.9
Q ss_pred eeecCcCCCCcceEEEcCCCC-CCCCccccc
Q 018332 323 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVE 352 (358)
Q Consensus 323 ~~C~~C~e~g~~~~~~~~~~~-~~~~~~~~~ 352 (358)
|.|..|...-+.-+|+|..+. |+|+|.|=.
T Consensus 1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~ 31 (45)
T cd02336 1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQ 31 (45)
T ss_pred CcccCCCCccCceEEEecCCCccccChHHHh
Confidence 579999999999999999988 999999943
No 404
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=89.88 E-value=0.48 Score=32.94 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=24.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~ 89 (358)
++.|..+|||.|.+....|.+ .+ +.+..++++.+.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~ 37 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDI 37 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCCh
Confidence 567889999999997665553 34 455566666543
No 405
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.61 E-value=4.4 Score=36.65 Aligned_cols=104 Identities=19% Similarity=0.304 Sum_probs=66.6
Q ss_pred chhhHhhhhccCCceecCCCcee---eecccCCcEEEEEEecc----CCcccHhhHHHHHHHHHHhhcc--cCCceEEEE
Q 018332 141 GKLEQLLAIEGRDYVLSRDHRKI---TVSELAGKTIGLYFGAH----WCPPCRSFTSQLIEVYNELKTT--ANHCFEVVL 211 (358)
Q Consensus 141 ~~l~~~~~~~~p~f~l~~~g~~~---~l~~~~~k~vlv~F~a~----wC~~C~~~~~~l~~l~~~~~~~--~~~~~~vv~ 211 (358)
..+.++.+-+.+.-.+..++..+ .....++-.+++.|.|. .|..|..+..++.-+++.+... ..++-++.+
T Consensus 28 ~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF 107 (331)
T KOG2603|consen 28 NKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFF 107 (331)
T ss_pred HHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEE
Confidence 34445555344443433333322 22344555678888764 6999999999999999887642 122345666
Q ss_pred EeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECC-CCcEE
Q 018332 212 VSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGP-DGKTI 265 (358)
Q Consensus 212 v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~-~G~v~ 265 (358)
-.+|-+. ..++.+.+++...|+++++.| .|+..
T Consensus 108 ~~Vd~~e---------------------~p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 108 CMVDYDE---------------------SPQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred EEEeccc---------------------cHHHHHHhcccCCCeEEEeCCCccccc
Confidence 5555433 468889999999999999965 55554
No 406
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=89.33 E-value=3.7 Score=32.43 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC--ceeeEEEECCCCc
Q 018332 187 SFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGK 263 (358)
Q Consensus 187 ~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~ 263 (358)
.....|.+++++|+. ..+.++++..+.. ..+.+.||+. ++|++++++.++.
T Consensus 41 ~~~~~l~~vAk~~kg---k~i~Fv~vd~~~~-----------------------~~~~~~fgl~~~~~P~v~i~~~~~~ 93 (130)
T cd02983 41 KYLEILKSVAEKFKK---KPWGWLWTEAGAQ-----------------------LDLEEALNIGGFGYPAMVAINFRKM 93 (130)
T ss_pred HHHHHHHHHHHHhcC---CcEEEEEEeCccc-----------------------HHHHHHcCCCccCCCEEEEEecccC
Confidence 446788888999984 3378888877754 4588999995 4999999988654
No 407
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=88.85 E-value=5.9 Score=31.09 Aligned_cols=58 Identities=12% Similarity=0.342 Sum_probs=42.9
Q ss_pred CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC
Q 018332 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG 101 (358)
Q Consensus 40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~ 101 (358)
.+.|+|++-|.-.|-+.|.++-..+.++++.++.- ..|..++++.-. .+.+.+.-.++
T Consensus 18 e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~Vp-dfn~~yel~dP 75 (133)
T PF02966_consen 18 EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEVP-DFNQMYELYDP 75 (133)
T ss_dssp -SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTTH-CCHHHTTS-SS
T ss_pred cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccch-hhhcccccCCC
Confidence 35799999999999999999999999999988764 556666666443 35555555555
No 408
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=88.71 E-value=0.18 Score=31.95 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=29.1
Q ss_pred CCceeecCcCCCCcce--EEEcCCCCCCCCcccccCcc
Q 018332 320 AKAYVCDCCKMRGRFW--AFSCDVCNYDLHPKCVEGIN 355 (358)
Q Consensus 320 ~~~~~C~~C~e~g~~~--~~~~~~~~~~~~~~~~~~~~ 355 (358)
..+..|..|.+...+. .|+|..|++-.|++|+....
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v~ 46 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKVP 46 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhhcC
Confidence 4456799999976653 79999999999999987643
No 409
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=88.56 E-value=1.3 Score=38.81 Aligned_cols=46 Identities=17% Similarity=0.373 Sum_probs=33.2
Q ss_pred eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
+....-.||.+++.|+-|.||+|+++.+++.++. +.+ +++.++...
T Consensus 100 i~~g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~----~~~--v~v~~~~~P 145 (232)
T PRK10877 100 IVYKAPQEKHVITVFTDITCGYCHKLHEQMKDYN----ALG--ITVRYLAFP 145 (232)
T ss_pred EEecCCCCCEEEEEEECCCChHHHHHHHHHHHHh----cCC--eEEEEEecc
Confidence 3333346899999999999999999999887653 334 666655433
No 410
>PHA03050 glutaredoxin; Provisional
Probab=88.40 E-value=0.44 Score=36.35 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.3
Q ss_pred EEEEeCCCChhhhhhhHHHHH
Q 018332 46 CLFFSANWCRPCKTFTPQLVQ 66 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~ 66 (358)
++.|..+|||+|++....|.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~ 35 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNK 35 (108)
T ss_pred EEEEECCCChHHHHHHHHHHH
Confidence 578899999999997776654
No 411
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=87.88 E-value=0.57 Score=40.71 Aligned_cols=64 Identities=11% Similarity=0.271 Sum_probs=50.7
Q ss_pred ccccCccc-ccCCCCc--eecccCC--CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 20 LASEGVEF-LLSRQGK--VPLSSCG--GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 20 l~~~~~~~-l~~~~g~--v~l~~~~--gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
+.+..+++ ++..+|+ .++.++. +++++|.|.+--||+-+.-.+.|.++++++.+. .+++.|-+.
T Consensus 75 ~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~---adFl~VYI~ 143 (237)
T PF00837_consen 75 LGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV---ADFLIVYIE 143 (237)
T ss_pred CCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh---hheehhhHh
Confidence 34455666 7777777 7888874 789999999888999999999999999999885 445555544
No 412
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=87.73 E-value=1 Score=38.95 Aligned_cols=58 Identities=16% Similarity=0.301 Sum_probs=47.8
Q ss_pred cCCCCceecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCC-ceEEEEEEec
Q 018332 29 LSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT-ELEVIFISFD 86 (358)
Q Consensus 29 ~~~~g~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~-~~~iv~i~~d 86 (358)
...+|.-.+.+..|++++|.+--.+|..|...+..|+.+..+|...|- ++.++.||--
T Consensus 13 W~i~~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 13 WKIGGQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred ceECCchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 444555677788899999999989999999999999999999987763 6777777754
No 413
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=87.69 E-value=0.6 Score=36.94 Aligned_cols=60 Identities=12% Similarity=0.200 Sum_probs=40.9
Q ss_pred CCEEEEEEeCC--CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018332 42 GKTICLFFSAN--WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA 119 (358)
Q Consensus 42 gk~vlv~F~a~--wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~ 119 (358)
+...+|+|-+. =++-+....=.+.++++++.... +.++.|++|.+. .++.+|||.+
T Consensus 34 ~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~--v~~akVDiD~~~--------------------~LA~~fgV~s 91 (132)
T PRK11509 34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADLEQSE--------------------AIGDRFGVFR 91 (132)
T ss_pred CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc--eEEEEEECCCCH--------------------HHHHHcCCcc
Confidence 34555666533 33447777778899999985322 677778777665 5788888888
Q ss_pred CCcc
Q 018332 120 YPFT 123 (358)
Q Consensus 120 ~P~~ 123 (358)
.|+.
T Consensus 92 iPTL 95 (132)
T PRK11509 92 FPAT 95 (132)
T ss_pred CCEE
Confidence 8863
No 414
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.15 E-value=2.4 Score=34.04 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=49.1
Q ss_pred ccCccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018332 22 SEGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (358)
Q Consensus 22 ~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~ 87 (358)
...++| +...+.+ +++.++.||..++.-+ +-.-|-|-.....|.+.+.++.+ ..+..||.|-
T Consensus 22 d~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~----~~Vl~IS~DL 86 (158)
T COG2077 22 DKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN----TVVLCISMDL 86 (158)
T ss_pred CcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC----cEEEEEeCCC
Confidence 344566 8888988 9999999997777666 55667799999999888877755 5688899885
No 415
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=86.32 E-value=0.83 Score=39.28 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=30.7
Q ss_pred CCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEe
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVS 213 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~ 213 (358)
.|++.++.|+...||+|..+.+.+ ..+.+.+. +++.++.+.
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~----~~v~~~~~~ 79 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP----EGTKMTKYH 79 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCC----CCCeEEEec
Confidence 467889999999999999998865 67777765 444454433
No 416
>PRK10638 glutaredoxin 3; Provisional
Probab=86.19 E-value=2 Score=30.72 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=24.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~ 89 (358)
++.|..+||++|++....|++ .+ +....++++.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~g--i~y~~~dv~~~~ 38 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KG--VSFQEIPIDGDA 38 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cC--CCcEEEECCCCH
Confidence 456778999999997766654 34 445566776554
No 417
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=85.54 E-value=1.9 Score=33.38 Aligned_cols=46 Identities=13% Similarity=0.360 Sum_probs=37.5
Q ss_pred cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018332 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (358)
Q Consensus 39 ~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~ 87 (358)
....|+|+|-|.-.|-|.|..+-..+.++++.+++- ..|..+++|.
T Consensus 20 ~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~Iylvdide 65 (142)
T KOG3414|consen 20 STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDE 65 (142)
T ss_pred cccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecch
Confidence 345699999999999999999999999999998764 4455556663
No 418
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=85.02 E-value=0.14 Score=49.48 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=36.9
Q ss_pred CCceeeeee-cCCceeecCcCCCCcceE---EEcCCCCCCCCcccccCccCC
Q 018332 310 KHEHELKLD-MAKAYVCDCCKMRGRFWA---FSCDVCNYDLHPKCVEGINLN 357 (358)
Q Consensus 310 ~~~~~~~~~-~~~~~~C~~C~e~g~~~~---~~~~~~~~~~~~~~~~~~~~~ 357 (358)
.+||.+..- +..+--|+.|.|+..|.. .+|+-|+.+.|.+||.+.-.|
T Consensus 143 i~PH~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~kipNN 194 (888)
T KOG4236|consen 143 IRPHTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFKIPNN 194 (888)
T ss_pred eecceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhcCCCC
Confidence 356655543 566777999999987775 689999999999999875433
No 419
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=84.70 E-value=1.3 Score=43.80 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=40.5
Q ss_pred cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC
Q 018332 39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD 118 (358)
Q Consensus 39 ~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 118 (358)
.+.++.-+.-|+.++||+|......+.+++.. .+++..-.|+..... +++.+|++.
T Consensus 113 ~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~----~~~i~~~~id~~~~~--------------------~~~~~~~v~ 168 (517)
T PRK15317 113 ALDGDFHFETYVSLSCHNCPDVVQALNLMAVL----NPNITHTMIDGALFQ--------------------DEVEARNIM 168 (517)
T ss_pred hcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh----CCCceEEEEEchhCH--------------------hHHHhcCCc
Confidence 34566778899999999999888777776663 233666566444333 456677777
Q ss_pred CCCc
Q 018332 119 AYPF 122 (358)
Q Consensus 119 ~~P~ 122 (358)
..|.
T Consensus 169 ~VP~ 172 (517)
T PRK15317 169 AVPT 172 (517)
T ss_pred ccCE
Confidence 6664
No 420
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=84.63 E-value=1.1 Score=34.01 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=22.6
Q ss_pred HHHHHHHcCCCceeeEEEECCCCcEEec
Q 018332 240 RQDLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 240 ~~~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
...+...||+..+|+++++ ++|+.+..
T Consensus 71 e~~L~~r~gv~~~PaLvf~-R~g~~lG~ 97 (107)
T PF07449_consen 71 ERALAARFGVRRWPALVFF-RDGRYLGA 97 (107)
T ss_dssp HHHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred HHHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence 4789999999999999999 77877665
No 421
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=84.16 E-value=4.5 Score=30.96 Aligned_cols=51 Identities=10% Similarity=0.238 Sum_probs=34.8
Q ss_pred HhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCc----eeeEEEECCC
Q 018332 186 RSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG----IPALVLIGPD 261 (358)
Q Consensus 186 ~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~----~P~~~lid~~ 261 (358)
......+.+++++++. .+ +.++.+|.+. .....+.||+.. .|++.+++.+
T Consensus 34 ~~~~~~~~~vAk~fk~---gk--i~Fv~~D~~~---------------------~~~~l~~fgl~~~~~~~P~~~i~~~~ 87 (111)
T cd03073 34 NYWRNRVLKVAKDFPD---RK--LNFAVADKED---------------------FSHELEEFGLDFSGGEKPVVAIRTAK 87 (111)
T ss_pred HHHHHHHHHHHHHCcC---Ce--EEEEEEcHHH---------------------HHHHHHHcCCCcccCCCCEEEEEeCC
Confidence 4556778888888871 23 5555555432 234778999974 9999999866
Q ss_pred C
Q 018332 262 G 262 (358)
Q Consensus 262 G 262 (358)
+
T Consensus 88 ~ 88 (111)
T cd03073 88 G 88 (111)
T ss_pred C
Confidence 5
No 422
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=83.22 E-value=2.1 Score=41.03 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=23.6
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~ 218 (358)
++.|..+|||+|......|.+ .++.+-.|.+|.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~----------~gi~~~~idi~~~~ 38 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA----------NDIPFTQISLDDDV 38 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH----------CCCCeEEEECCCCh
Confidence 567899999999987766654 23444456666543
No 423
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=83.20 E-value=7.2 Score=26.70 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=35.4
Q ss_pred EEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeE
Q 018332 176 YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPAL 255 (358)
Q Consensus 176 ~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 255 (358)
.|+..||+.|.+..-.|... +-.++++.+..... ..++.+......+|++
T Consensus 3 ly~~~~~p~~~rv~~~L~~~--------gl~~e~~~v~~~~~----------------------~~~~~~~np~~~vP~L 52 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA--------GITVELREVELKNK----------------------PAEMLAASPKGTVPVL 52 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc--------CCCcEEEEeCCCCC----------------------CHHHHHHCCCCCCCEE
Confidence 46789999998876555432 24566666655322 1345455556778988
Q ss_pred EEECCCCcEEe
Q 018332 256 VLIGPDGKTIS 266 (358)
Q Consensus 256 ~lid~~G~v~~ 266 (358)
. +.+|..+.
T Consensus 53 ~--~~~g~~l~ 61 (71)
T cd03060 53 V--LGNGTVIE 61 (71)
T ss_pred E--ECCCcEEe
Confidence 4 24566553
No 424
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=82.83 E-value=3.7 Score=29.98 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=24.1
Q ss_pred CCCEEEEEEeC----CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018332 41 GGKTICLFFSA----NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (358)
Q Consensus 41 ~gk~vlv~F~a----~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~ 89 (358)
+++.|+|+=.. |||++|++....|.+ .+ +.+..++++.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~--i~y~~idv~~~~ 49 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQ-------LG--VDFGTFDILEDE 49 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHH-------cC--CCeEEEEcCCCH
Confidence 34556555332 799999997665544 34 445556665543
No 425
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=82.47 E-value=3 Score=37.31 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=32.8
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
++..|+|.||-+.++.|..+...|..+|.++.. +.++-|...
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~ 186 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRAS 186 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEEC
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehh
Confidence 356899999999999999999999999999865 556666554
No 426
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.95 E-value=2.4 Score=36.25 Aligned_cols=57 Identities=18% Similarity=0.333 Sum_probs=42.3
Q ss_pred ccCCCCceecccC-CCC---EEEEEEeCC----CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 28 LLSRQGKVPLSSC-GGK---TICLFFSAN----WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 28 l~~~~g~v~l~~~-~gk---~vlv~F~a~----wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
.-..+|+.+|+++ .|| .|.=++++| -|+-|..++.++...-.-|..++ +.+++|+--
T Consensus 57 Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRA 121 (247)
T COG4312 57 FETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRA 121 (247)
T ss_pred eecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecC
Confidence 4456677888885 565 333344566 69999999999988888888887 778877754
No 427
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=81.44 E-value=4.1 Score=29.05 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=22.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
++.|.-++||+|.+....|. +.| +++..+.++.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g--~~~~~i~~~~~ 36 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKG--VDYEEIDVDDD 36 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcC--CCcEEEEecCC
Confidence 46788999999999665554 556 44555555543
No 428
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=81.29 E-value=3.7 Score=30.51 Aligned_cols=39 Identities=13% Similarity=0.231 Sum_probs=23.7
Q ss_pred CCEEEEEEe----CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018332 42 GKTICLFFS----ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (358)
Q Consensus 42 gk~vlv~F~----a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~ 89 (358)
.+.|+|+=. +||||+|.+....|.+ .+ +.+..++++.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~--i~~~~~di~~~~ 53 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKA-------CG--VPFAYVNVLEDP 53 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHH-------cC--CCEEEEECCCCH
Confidence 344555543 3999999997766544 34 345556665443
No 429
>PHA03075 glutaredoxin-like protein; Provisional
Probab=79.63 E-value=2.2 Score=32.54 Aligned_cols=85 Identities=14% Similarity=0.217 Sum_probs=48.6
Q ss_pred cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018332 171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 250 (358)
Q Consensus 171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 250 (358)
|.+++.|.-|.|+.|......|.++.++|.- ..+.|+..-..... .. .+...-.......+.+.++ .
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~i---lrVNIlSfFsK~g~------v~---~lg~d~~y~lInn~~~~lg-n 68 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDI---LRVNILSFFSKDGQ------VK---VLGMDKGYTLINNFFKHLG-N 68 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccE---EEEEeeeeeccCCc------eE---EEecccceehHHHHHHhhc-c
Confidence 5789999999999999998888888777752 22333322222110 00 0000001122467777777 5
Q ss_pred ceeeEEEECC-CCcEEecC
Q 018332 251 GIPALVLIGP-DGKTISTN 268 (358)
Q Consensus 251 ~~P~~~lid~-~G~v~~~~ 268 (358)
.+=.++=.|| .|++.+.+
T Consensus 69 e~v~lfKydp~t~qmA~V~ 87 (123)
T PHA03075 69 EYVSLFKYDPETKQMAFVD 87 (123)
T ss_pred cEEEEEEEcCCCCcEEEEe
Confidence 5556666674 56665554
No 430
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=78.41 E-value=3.2 Score=36.90 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=25.4
Q ss_pred CCCCEEEEEEeCCCChhhhhhhHHHHHHHH
Q 018332 40 CGGKTICLFFSANWCRPCKTFTPQLVQLYD 69 (358)
Q Consensus 40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~ 69 (358)
-.+|.+++.|+=+.||+|+++.+.+.++.+
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 457899999999999999999998876543
No 431
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=77.72 E-value=6.9 Score=29.57 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=22.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
+|.|..+||+.|......|.+ .+.+..++-++-+.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~-------~~v~~~vvELD~~~~ 51 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD-------LGVNPKVVELDEDED 51 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh-------CCCCCEEEEccCCCC
Confidence 377899999999995554443 343345555544433
No 432
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=77.60 E-value=2.7 Score=30.06 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=30.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG 91 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~ 91 (358)
++.|..+.|+-|......+.++.. .. ++++..|+++.+++-
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~---~~--~~~l~~vDI~~d~~l 42 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAA---EF--PFELEEVDIDEDPEL 42 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCT---TS--TCEEEEEETTTTHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh---hc--CceEEEEECCCCHHH
Confidence 578889999999998887776433 22 388999999977653
No 433
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=76.48 E-value=0.74 Score=41.69 Aligned_cols=69 Identities=17% Similarity=0.359 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHhcCCCCCccc---cCCCceeeeeecCCceeecCcCC-CCcceEEEcCCCC-CCCCcccccC
Q 018332 285 ESRIAEIETALKKEGDALPREVK---DVKHEHELKLDMAKAYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVEG 353 (358)
Q Consensus 285 ~~~~~~L~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~~ 353 (358)
.++..+|...++.....-+.... ..-|.....-...-+..|++|.- .-.|++|.|..|- |.++|-|-..
T Consensus 200 qqrKv~Ln~fldtl~sdp~p~cl~wlpLmhrla~v~nv~hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfwr 273 (434)
T KOG4301|consen 200 QQRKVELNQFLDTLMSDPPPQCLVWLPLMHRLATVENVFHPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWR 273 (434)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhcccCCCccCcceecccccchhhhHhhcCCccccchhhcc
Confidence 34455666666666655543211 11121111111344677999986 6899999999999 9999999554
No 434
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=76.20 E-value=22 Score=27.70 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018332 188 FTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 188 ~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
++-.+....+.+++ .+++|.-.++..++..|.+.-. ...+.+.-|...+|.+++ ||+|+..
T Consensus 25 eL~~~a~~~~~Lk~---~gv~v~RyNL~~~P~aF~~n~~-------------V~~~L~~~G~e~LPitlV---dGeiv~~ 85 (123)
T PF06953_consen 25 ELVRFAADLDWLKE---QGVEVERYNLAQNPQAFVENPE-------------VNQLLQTEGAEALPITLV---DGEIVKT 85 (123)
T ss_dssp HHHHHHHHHHHHHH---TT-EEEEEETTT-TTHHHHSHH-------------HHHHHHHH-GGG-SEEEE---TTEEEEE
T ss_pred HHHHHHHHHHHHHh---CCceEEEEccccCHHHHHhCHH-------------HHHHHHHcCcccCCEEEE---CCEEEEe
Confidence 34455555666665 8899999999888766665433 456667778999998875 8999877
Q ss_pred C
Q 018332 268 N 268 (358)
Q Consensus 268 ~ 268 (358)
+
T Consensus 86 G 86 (123)
T PF06953_consen 86 G 86 (123)
T ss_dssp S
T ss_pred c
Confidence 3
No 435
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=76.08 E-value=20 Score=27.64 Aligned_cols=89 Identities=21% Similarity=0.184 Sum_probs=47.1
Q ss_pred ecccCCcEEEEEEeccCC--cccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHH
Q 018332 165 VSELAGKTIGLYFGAHWC--PPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD 242 (358)
Q Consensus 165 l~~~~~k~vlv~F~a~wC--~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (358)
+++++.+.-+|..+|+.- +.=......|.+-...+.+ .++.++.+.-+.... ..-+........
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~e---Rdi~v~~i~~~~~~~-----------~~~~~~~~~~~~ 68 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDE---RDIVVIVITGDGARS-----------PGKPLSPEDIQA 68 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhcccc---CceEEEEEeCCcccc-----------ccCcCCHHHHHH
Confidence 445555443333444421 1123334444443334443 667666664332210 001122233568
Q ss_pred HHHHcCCC-ceeeEEEECCCCcEEec
Q 018332 243 LCRIFNIK-GIPALVLIGPDGKTIST 267 (358)
Q Consensus 243 l~~~~~v~-~~P~~~lid~~G~v~~~ 267 (358)
+.+.|++. +.-+++||+++|.+..+
T Consensus 69 lr~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 69 LRKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred HHHHhCCCCCceEEEEEeCCCcEEEe
Confidence 88999875 34678999999999877
No 436
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=75.57 E-value=11 Score=31.96 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=62.9
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
|-+|+|..|...-+.|.-+...|++++-+|++ +-||.+-.+. -...|--
T Consensus 111 gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-------iKFVki~at~------------------------cIpNYPe 159 (240)
T KOG3170|consen 111 GVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-------IKFVKIPATT------------------------CIPNYPE 159 (240)
T ss_pred ccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-------ceEEeccccc------------------------ccCCCcc
Confidence 67899999999999999999999999999975 4444443221 1123344
Q ss_pred CceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCCC
Q 018332 250 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDAL 302 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~ 302 (358)
...||+++. -.|-+... +.|...+.......++++..+-+....+
T Consensus 160 ~nlPTl~VY-~~G~lk~q-------~igll~lgG~n~t~ed~e~~L~qaga~l 204 (240)
T KOG3170|consen 160 SNLPTLLVY-HHGALKKQ-------MIGLLELGGMNLTMEDVEDFLVQAGAAL 204 (240)
T ss_pred cCCCeEEEe-ecchHHhh-------eehhhhhcCCcCCHHHHHHHHHhccccc
Confidence 668999998 44544433 4555555555566667766666655433
No 437
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=75.45 E-value=20 Score=33.20 Aligned_cols=72 Identities=14% Similarity=0.300 Sum_probs=46.0
Q ss_pred cEEEEEEeccCCcccHhhH------HHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018332 171 KTIGLYFGAHWCPPCRSFT------SQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC 244 (358)
Q Consensus 171 k~vlv~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (358)
+.++|+|+.+--.. +... ..+-+|+.+.. .+.++.+..|....+ ..++
T Consensus 52 d~l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVl--E~~gigfg~VD~~Kd-----------------------~klA 105 (383)
T PF01216_consen 52 DVLVLYYHEPVESD-KVSQKQFQMTELVLELAAQVL--EDKGIGFGMVDSKKD-----------------------AKLA 105 (383)
T ss_dssp SEEEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHC--GGCTEEEEEEETTTT-----------------------HHHH
T ss_pred cEEEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhc--cccCcceEEeccHHH-----------------------HHHH
Confidence 57788888775322 2221 22334444443 247888888887765 6899
Q ss_pred HHcCCCceeeEEEECCCCcEEecCc
Q 018332 245 RIFNIKGIPALVLIGPDGKTISTNG 269 (358)
Q Consensus 245 ~~~~v~~~P~~~lid~~G~v~~~~g 269 (358)
+++|+...++++++ ++|+++-.+|
T Consensus 106 KKLgv~E~~SiyVf-kd~~~IEydG 129 (383)
T PF01216_consen 106 KKLGVEEEGSIYVF-KDGEVIEYDG 129 (383)
T ss_dssp HHHT--STTEEEEE-ETTEEEEE-S
T ss_pred HhcCccccCcEEEE-ECCcEEEecC
Confidence 99999999999999 8888887755
No 438
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=74.80 E-value=4.6 Score=39.99 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=38.9
Q ss_pred ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018332 38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA 117 (358)
Q Consensus 38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 117 (358)
..+.++.-+.-|+.+.||+|......+.+++.. .++++.-.|+..... +++.+|++
T Consensus 113 ~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~----~p~i~~~~id~~~~~--------------------~~~~~~~v 168 (515)
T TIGR03140 113 RRLNGPLHFETYVSLTCQNCPDVVQALNQMALL----NPNISHTMIDGALFQ--------------------DEVEALGI 168 (515)
T ss_pred HhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh----CCCceEEEEEchhCH--------------------HHHHhcCC
Confidence 334567778999999999998766666555443 334555554443333 45666777
Q ss_pred CCCCc
Q 018332 118 DAYPF 122 (358)
Q Consensus 118 ~~~P~ 122 (358)
.+.|.
T Consensus 169 ~~VP~ 173 (515)
T TIGR03140 169 QGVPA 173 (515)
T ss_pred cccCE
Confidence 66663
No 439
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=74.50 E-value=1.4 Score=28.88 Aligned_cols=26 Identities=27% Similarity=0.673 Sum_probs=21.4
Q ss_pred CceeecCcCCC---CcceEEEcCCCCCCC
Q 018332 321 KAYVCDCCKMR---GRFWAFSCDVCNYDL 346 (358)
Q Consensus 321 ~~~~C~~C~e~---g~~~~~~~~~~~~~~ 346 (358)
-.|+|-+|... -.+=..+|.+|+|.|
T Consensus 19 miYiCgdC~~en~lk~~D~irCReCG~RI 47 (62)
T KOG3507|consen 19 MIYICGDCGQENTLKRGDVIRCRECGYRI 47 (62)
T ss_pred EEEEeccccccccccCCCcEehhhcchHH
Confidence 35999999876 467789999999875
No 440
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=74.41 E-value=1.9 Score=32.79 Aligned_cols=34 Identities=21% Similarity=0.515 Sum_probs=29.3
Q ss_pred CceeecCcCCCCcceEEEcCC--CCCCCCcccccCcc
Q 018332 321 KAYVCDCCKMRGRFWAFSCDV--CNYDLHPKCVEGIN 355 (358)
Q Consensus 321 ~~~~C~~C~e~g~~~~~~~~~--~~~~~~~~~~~~~~ 355 (358)
....|..|+.. .|-.-+|.. |.--+||.||+...
T Consensus 54 ~~~~C~iC~~~-~G~~i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 54 FKLKCSICGKS-GGACIKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred cCCcCcCCCCC-CceeEEcCCCCCCcCCCHHHHHHCC
Confidence 56789999998 677899998 99999999998754
No 441
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=73.13 E-value=5.7 Score=29.86 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=21.7
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018332 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (358)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~ 87 (358)
..|+.++|+.|++....|+ ++| +++..+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~-------~~~--i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLE-------EHG--IEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHH-------HcC--CCcEEEeecc
Confidence 4678999999999665444 345 5566666643
No 442
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=72.93 E-value=0.7 Score=41.55 Aligned_cols=124 Identities=12% Similarity=0.148 Sum_probs=68.0
Q ss_pred CEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCc
Q 018332 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPF 122 (358)
Q Consensus 43 k~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~ 122 (358)
.+|-+.||+.|||..+...|.++-.+.-+.. ++. ..++.... ..++..+||+...|+
T Consensus 77 ~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~----i~h--~~vee~~~-----------------lpsv~s~~~~~~~ps 133 (319)
T KOG2640|consen 77 DYVSLLFYASWCPFSRAVRPEFDVRSSLFSS----IQH--FAVEESQA-----------------LPSVFSSYGIHSEPS 133 (319)
T ss_pred CcccccchhcccCcccccCcccchhhhhccc----ccc--ccHHHHhh-----------------cccchhccccccCCc
Confidence 5888999999999999999999877775542 111 11221111 136778899988886
Q ss_pred chHhHHHHHhhhhhhhccchhhHhhhhccCCceecCCC--ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHH
Q 018332 123 TRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDH--RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE 198 (358)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g--~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~ 198 (358)
.--........+.+ ...+..+++ |..+..+ -.+...+..+ .+...+|.+||++.....|...-+...
T Consensus 134 ~~~~n~t~~~~~~~---~r~l~sLv~-----fy~~i~~~~v~ie~~d~~~-~~~~~ry~~~~~~t~l~~p~~~~~~~~ 202 (319)
T KOG2640|consen 134 NLMLNQTCPASYRG---ERDLASLVN-----FYTEITPMSVLIEILDCTS-CLEPVRYVPEGGPTILLAPDGNLFTWA 202 (319)
T ss_pred ceeeccccchhhcc---cccHHHHHH-----HHHhhccchhcccccCccc-ceeeeEeccccCcccccCcCCCcchhc
Confidence 43222222222222 222233322 1111111 1122222233 577788999999877677665554433
No 443
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=72.82 E-value=6.9 Score=26.81 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=22.2
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018332 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (358)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~ 87 (358)
..|+.+||+.|++..-.+ +.+|-+++++.++...
T Consensus 2 ~ly~~~~~p~~~rv~~~L-------~~~gl~~e~~~v~~~~ 35 (71)
T cd03060 2 ILYSFRRCPYAMRARMAL-------LLAGITVELREVELKN 35 (71)
T ss_pred EEEecCCCcHHHHHHHHH-------HHcCCCcEEEEeCCCC
Confidence 356789999998865433 3334447777776543
No 444
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=72.07 E-value=18 Score=27.59 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=34.6
Q ss_pred HhhHHHHHHHHHH---hhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCc--eeeEEEECC
Q 018332 186 RSFTSQLIEVYNE---LKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG--IPALVLIGP 260 (358)
Q Consensus 186 ~~~~~~l~~l~~~---~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~--~P~~~lid~ 260 (358)
......+.+++++ ++ .+ +.+|.+|.+. .....+.||++. +|.+.+.+-
T Consensus 30 ~~~~~~~~~vAk~~~~~k----gk--i~Fv~~d~~~---------------------~~~~~~~fgl~~~~~P~i~i~~~ 82 (111)
T cd03072 30 ESLKEFKQAVARQLISEK----GA--INFLTADGDK---------------------FRHPLLHLGKTPADLPVIAIDSF 82 (111)
T ss_pred HHHHHHHHHHHHHHHhcC----ce--EEEEEEechH---------------------hhhHHHHcCCCHhHCCEEEEEcc
Confidence 5567788888888 76 34 4455555432 234888999987 899999976
Q ss_pred CC
Q 018332 261 DG 262 (358)
Q Consensus 261 ~G 262 (358)
++
T Consensus 83 ~~ 84 (111)
T cd03072 83 RH 84 (111)
T ss_pred hh
Confidence 54
No 445
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=70.64 E-value=0.9 Score=40.88 Aligned_cols=75 Identities=12% Similarity=0.311 Sum_probs=50.3
Q ss_pred cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018332 171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 250 (358)
Q Consensus 171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 250 (358)
-+|-+.||++|||..+...|.+.-.+.-|.. |-...++.. .. ...+...|++.
T Consensus 77 ~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-------i~h~~vee~-------~~-------------lpsv~s~~~~~ 129 (319)
T KOG2640|consen 77 DYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-------IQHFAVEES-------QA-------------LPSVFSSYGIH 129 (319)
T ss_pred CcccccchhcccCcccccCcccchhhhhccc-------cccccHHHH-------hh-------------cccchhccccc
Confidence 4778899999999999888888777666642 111112211 11 23567788888
Q ss_pred ceeeEEEECCCCcEEecCcchh
Q 018332 251 GIPALVLIGPDGKTISTNGKEM 272 (358)
Q Consensus 251 ~~P~~~lid~~G~v~~~~g~~~ 272 (358)
+.|+..+.+..=..++++.+.+
T Consensus 130 ~~ps~~~~n~t~~~~~~~~r~l 151 (319)
T KOG2640|consen 130 SEPSNLMLNQTCPASYRGERDL 151 (319)
T ss_pred cCCcceeeccccchhhcccccH
Confidence 8888888877777776654443
No 446
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=70.54 E-value=6.7 Score=37.61 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=24.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~ 89 (358)
++.|..+|||+|.+....|. +.| +....++++.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~-------~~g--i~~~~idi~~~~ 38 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFG-------AND--IPFTQISLDDDV 38 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCC--CCeEEEECCCCh
Confidence 57889999999999665554 345 445567776554
No 447
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=70.33 E-value=21 Score=28.88 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=10.8
Q ss_pred CCcccHhhHHHHHH
Q 018332 181 WCPPCRSFTSQLIE 194 (358)
Q Consensus 181 wC~~C~~~~~~l~~ 194 (358)
+|++|......|+.
T Consensus 15 t~~~C~~ak~iL~~ 28 (147)
T cd03031 15 TFEDCNNVRAILES 28 (147)
T ss_pred cChhHHHHHHHHHH
Confidence 89999887766654
No 448
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=69.94 E-value=36 Score=32.25 Aligned_cols=28 Identities=18% Similarity=0.498 Sum_probs=24.4
Q ss_pred HHHHHHHcCCCceeeEEEECCCCcEEec
Q 018332 240 RQDLCRIFNIKGIPALVLIGPDGKTIST 267 (358)
Q Consensus 240 ~~~l~~~~~v~~~P~~~lid~~G~v~~~ 267 (358)
...++..|-+..+|..++|+..|+.+..
T Consensus 66 a~qFs~IYp~v~vPs~ffIg~sGtpLev 93 (506)
T KOG2507|consen 66 ATQFSAIYPYVSVPSIFFIGFSGTPLEV 93 (506)
T ss_pred hhhhhhhcccccccceeeecCCCceeEE
Confidence 3567788899999999999999998876
No 449
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=69.58 E-value=23 Score=24.74 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=47.1
Q ss_pred EEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCc
Q 018332 172 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG 251 (358)
Q Consensus 172 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 251 (358)
+++..|-+...+-+...+..+.++.+++.. ..+++=.|.+... ..+++.+++..
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~---~~~~LeVIDv~~~-----------------------P~lAe~~~ivA 55 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLG---GPYELEVIDVLKQ-----------------------PQLAEEDKIVA 55 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcC---CcEEEEEEEcccC-----------------------HhHHhhCCEEE
Confidence 355667677667788888888888888764 5666666666554 68899999999
Q ss_pred eeeEEEECC
Q 018332 252 IPALVLIGP 260 (358)
Q Consensus 252 ~P~~~lid~ 260 (358)
+||++-..|
T Consensus 56 tPtLvk~~P 64 (72)
T cd02978 56 TPTLVKVLP 64 (72)
T ss_pred echhhhcCC
Confidence 999876644
No 450
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.74 E-value=3.9 Score=41.03 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=43.0
Q ss_pred CCCCc--eecccCCCCEEEEEEeCCCChhhhhhhHH-H--HHHHHHHhcCCCceEEEEEEecCCh
Q 018332 30 SRQGK--VPLSSCGGKTICLFFSANWCRPCKTFTPQ-L--VQLYDTLRTRGTELEVIFISFDHDE 89 (358)
Q Consensus 30 ~~~g~--v~l~~~~gk~vlv~F~a~wC~~C~~~~p~-~--~~~~~~l~~~~~~~~iv~i~~d~~~ 89 (358)
-.+|+ +..+..++|+|||-.-++||.=|.-|..+ | .++++.+++. +|.|++|.++
T Consensus 29 ~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDREE 88 (667)
T COG1331 29 YPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDREE 88 (667)
T ss_pred cccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeEChhh
Confidence 34566 78888899999999999999999887763 2 4577777765 8888888654
No 451
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=68.55 E-value=9.6 Score=32.61 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=42.8
Q ss_pred ccCCCCceecccC-CCC--EEEEEEe-----CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018332 28 LLSRQGKVPLSSC-GGK--TICLFFS-----ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (358)
Q Consensus 28 l~~~~g~v~l~~~-~gk--~vlv~F~-----a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~ 87 (358)
+...+|+++|+++ .|+ +++-.|- ...|+-|..++..+.....-|..++ +.++.|+-..
T Consensus 51 F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSraP 116 (211)
T PF05988_consen 51 FDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRAP 116 (211)
T ss_pred EeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCCC
Confidence 5667777999985 665 3333332 3579999999999977777788887 7788887653
No 452
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=68.48 E-value=11 Score=28.91 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=23.2
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
..|+.++|+.|++....|++ +| +++..+++..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~--i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NG--IEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cC--CceEEEecCCC
Confidence 35779999999997665544 45 56777777644
No 453
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=67.00 E-value=8.6 Score=29.31 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=22.3
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
..|+.++|+.|++....|+ ++| +.+..+++..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~-------~~~--i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLD-------EHG--VDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHH-------HcC--CceEEecccCC
Confidence 3577999999999665554 345 55666666543
No 454
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=66.91 E-value=3.4 Score=31.61 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=15.8
Q ss_pred EEEeccCCcccHhhHHHHHH
Q 018332 175 LYFGAHWCPPCRSFTSQLIE 194 (358)
Q Consensus 175 v~F~a~wC~~C~~~~~~l~~ 194 (358)
..|..++|+.|++....|++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 35788999999988776654
No 455
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=66.88 E-value=11 Score=29.74 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=22.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD 88 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~ 88 (358)
+..|+.++|+.|++....| .++| +.+..+++..+
T Consensus 2 i~iY~~~~C~~C~ka~~~L-------~~~g--i~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWL-------EEHD--IPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHH-------HHcC--CCcEEeeccCC
Confidence 3467799999999965444 4455 55666665543
No 456
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=66.72 E-value=10 Score=28.34 Aligned_cols=54 Identities=13% Similarity=0.283 Sum_probs=38.6
Q ss_pred CEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC
Q 018332 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD 118 (358)
Q Consensus 43 k~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~ 118 (358)
+.|||.|..+.- .-...+..|.+++++.+..| +++.|+|...+. ..||+++.+.
T Consensus 20 ~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~g---T~~~vdCgd~e~------------------kKLCKKlKv~ 73 (112)
T cd03067 20 NNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQG---TIAWIDCGDSES------------------RKLCKKLKVD 73 (112)
T ss_pred CcEEEEEecchh-hHHHHHHHHHHHHHHhcCce---eEEEEecCChHH------------------HHHHHHHccC
Confidence 577888876543 33445568899999998885 799999986443 3677777765
No 457
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=66.44 E-value=10 Score=31.56 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=26.8
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 48 FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 48 ~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
.|.-|.|+.|-.+.|.+.++..++... +.+-+|-+.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~---i~~~~i~~~ 37 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK---IEFRFIPGG 37 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT---EEEEEEE--
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc---EEEEEEEcc
Confidence 588999999999999999999999776 666666543
No 458
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=66.22 E-value=17 Score=29.56 Aligned_cols=101 Identities=20% Similarity=0.295 Sum_probs=56.8
Q ss_pred eeeeccc-CCcE-EEEEEeccCCcc-cHhhHHHHHHHHHHhhcccCCce-EEEEEeCCCC--HHHHHHhhhcCCcccccc
Q 018332 162 KITVSEL-AGKT-IGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCF-EVVLVSTDRD--HKEFDLNHSIMPWLAIPY 235 (358)
Q Consensus 162 ~~~l~~~-~~k~-vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~-~vv~v~~d~~--~~~~~~~~~~~~~~~~~~ 235 (358)
+++++++ +||- ++.-.-+...|. |+...|-+.+-+++++. +++ +|+-|++++. ...|.+.+... -.+.+
T Consensus 34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elks---KGVd~iicvSVnDpFv~~aW~k~~g~~--~~V~f 108 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKS---KGVDEIICVSVNDPFVMKAWAKSLGAN--DHVKF 108 (171)
T ss_pred eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHh---cCCcEEEEEecCcHHHHHHHHhhcCcc--ceEEE
Confidence 6677765 5644 444444455666 67889999998999986 544 4555677642 13444443221 12333
Q ss_pred CchhHHHHHHHcC-----------CCceeeEEEECCCCcEEecC
Q 018332 236 EDRARQDLCRIFN-----------IKGIPALVLIGPDGKTISTN 268 (358)
Q Consensus 236 ~~~~~~~l~~~~~-----------v~~~P~~~lid~~G~v~~~~ 268 (358)
..|...++.+.++ +++-...+++ .||+|...+
T Consensus 109 ~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~n 151 (171)
T KOG0541|consen 109 VADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVN 151 (171)
T ss_pred EecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEE
Confidence 3343344444333 3344445555 888887765
No 459
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=64.63 E-value=9.9 Score=28.70 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=20.6
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
..|+.|+|+.|++....| .++| +++..+++.
T Consensus 2 ~iy~~~~C~~crka~~~L-------~~~~--i~~~~~di~ 32 (105)
T cd03035 2 TLYGIKNCDTVKKARKWL-------EARG--VAYTFHDYR 32 (105)
T ss_pred EEEeCCCCHHHHHHHHHH-------HHcC--CCeEEEecc
Confidence 467899999999965544 4445 445555554
No 460
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=63.85 E-value=4.1 Score=22.25 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.9
Q ss_pred eecCcCCCCcceEEEcCCCCCCC
Q 018332 324 VCDCCKMRGRFWAFSCDVCNYDL 346 (358)
Q Consensus 324 ~C~~C~e~g~~~~~~~~~~~~~~ 346 (358)
.|..|....+.-.-.|..|+|++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48889999999999999999875
No 461
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=63.77 E-value=19 Score=31.51 Aligned_cols=46 Identities=26% Similarity=0.284 Sum_probs=32.8
Q ss_pred ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhc
Q 018332 28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT 73 (358)
Q Consensus 28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~ 73 (358)
....++. +.+-..-+++.++.|+-.-||+|+...|.+.+.+....+
T Consensus 69 ~~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 69 YLTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred eecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 3344444 444445569999999999999998888888875554433
No 462
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=63.75 E-value=41 Score=23.30 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=14.4
Q ss_pred EEEeccCCcccHhhHHHHHH
Q 018332 175 LYFGAHWCPPCRSFTSQLIE 194 (358)
Q Consensus 175 v~F~a~wC~~C~~~~~~l~~ 194 (358)
..++.++|+.|.+..-.|.+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred eEecCCCCchHHHHHHHHHH
Confidence 35667899999987665544
No 463
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=62.86 E-value=12 Score=28.10 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=16.0
Q ss_pred EEEeccCCcccHhhHHHHHH
Q 018332 175 LYFGAHWCPPCRSFTSQLIE 194 (358)
Q Consensus 175 v~F~a~wC~~C~~~~~~l~~ 194 (358)
..|+.++|+.|++....|++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46888999999988776654
No 464
>PRK09301 circadian clock protein KaiB; Provisional
Probab=61.80 E-value=38 Score=25.44 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=50.8
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN 248 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (358)
++.+++=.|.+..-+-....+..+.++.+++.. ..+++=.|.+-.. ..+++.++
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~---g~y~LeVIDv~~q-----------------------PelAE~~~ 57 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFK---GVYALKVIDVLKN-----------------------PQLAEEDK 57 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC---CceEEEEEEcccC-----------------------HhHHhHCC
Confidence 346777777777778888888899998887764 4466666666553 68999999
Q ss_pred CCceeeEEEECCC
Q 018332 249 IKGIPALVLIGPD 261 (358)
Q Consensus 249 v~~~P~~~lid~~ 261 (358)
+.++||++-..|.
T Consensus 58 IvATPTLIK~~P~ 70 (103)
T PRK09301 58 ILATPTLAKILPP 70 (103)
T ss_pred eEEecHHhhcCCC
Confidence 9999998877543
No 465
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=61.78 E-value=21 Score=31.32 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=34.0
Q ss_pred cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhc
Q 018332 157 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKT 201 (358)
Q Consensus 157 ~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~ 201 (358)
..++......+..++++++.|....||+|....+.+.+.+.....
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 444554555555568999999999999999999988887666653
No 466
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=61.35 E-value=3 Score=41.99 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=25.5
Q ss_pred eecCcCC-CCcceEEEcCCCC-CCCCcccc
Q 018332 324 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCV 351 (358)
Q Consensus 324 ~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~ 351 (358)
-|.+|.+ ...|++|.|..|= ||||+.|-
T Consensus 605 kCniCk~~pIvG~RyR~l~~fn~dlCq~CF 634 (966)
T KOG4286|consen 605 KCNICKECPIIGFRYRSLKHFNYDICQSCF 634 (966)
T ss_pred hcchhhhCccceeeeeehhhcChhHHhhHh
Confidence 3999998 7999999999997 99999993
No 467
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=60.84 E-value=15 Score=31.35 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=51.3
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI 249 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 249 (358)
.-.++|..|-+.-+-|..+...+.=|+.+|+. +.++-|... .-....+|..
T Consensus 159 s~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-----vKFckikss------------------------~~gas~~F~~ 209 (273)
T KOG3171|consen 159 STTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-----VKFCKIKSS------------------------NTGASDRFSL 209 (273)
T ss_pred eEEEEEEEecCCCchHHHHhhhHHHhhccCCc-----eeEEEeeec------------------------cccchhhhcc
Confidence 34677888999888999999999999999974 444444433 2345678889
Q ss_pred CceeeEEEECCCCcEEe
Q 018332 250 KGIPALVLIGPDGKTIS 266 (358)
Q Consensus 250 ~~~P~~~lid~~G~v~~ 266 (358)
..+|++.+. ++|.++.
T Consensus 210 n~lP~LliY-kgGeLIg 225 (273)
T KOG3171|consen 210 NVLPTLLIY-KGGELIG 225 (273)
T ss_pred cCCceEEEe-eCCchhH
Confidence 999999999 8888764
No 468
>PRK12496 hypothetical protein; Provisional
Probab=60.47 E-value=6.2 Score=32.54 Aligned_cols=10 Identities=30% Similarity=0.899 Sum_probs=5.1
Q ss_pred ceEEEcCCCC
Q 018332 334 FWAFSCDVCN 343 (358)
Q Consensus 334 ~~~~~~~~~~ 343 (358)
-|.|+|.-|+
T Consensus 125 ~w~~~C~gC~ 134 (164)
T PRK12496 125 KWRKVCKGCK 134 (164)
T ss_pred eeeEECCCCC
Confidence 4555555554
No 469
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=60.08 E-value=8.8 Score=24.40 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=25.2
Q ss_pred ecCcCC-CCcceEEEcCCCCCCCCcccccCc
Q 018332 325 CDCCKM-RGRFWAFSCDVCNYDLHPKCVEGI 354 (358)
Q Consensus 325 C~~C~e-~g~~~~~~~~~~~~~~~~~~~~~~ 354 (358)
|..|++ ...+..-+|+.|+--.|..|.-.+
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPP 32 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSS
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCC
Confidence 666777 578899999999999999997664
No 470
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=59.43 E-value=1.3 Score=43.02 Aligned_cols=42 Identities=19% Similarity=0.520 Sum_probs=32.8
Q ss_pred eeeeeecCCceeecCcCCCCcce---EEEcCCCCCCCCcccccCc
Q 018332 313 HELKLDMAKAYVCDCCKMRGRFW---AFSCDVCNYDLHPKCVEGI 354 (358)
Q Consensus 313 ~~~~~~~~~~~~C~~C~e~g~~~---~~~~~~~~~~~~~~~~~~~ 354 (358)
+-....+..+-+|-+|+.-.-|. -.+|++|.|+-|.+||...
T Consensus 269 Tf~vHSY~rpTVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~v 313 (888)
T KOG4236|consen 269 TFIVHSYTRPTVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMKV 313 (888)
T ss_pred eEEEeeccCchHHHHHHHHHHHHHhcCcccccCCcchhhhhhhhc
Confidence 33444577889999999865544 3689999999999999764
No 471
>PRK12559 transcriptional regulator Spx; Provisional
Probab=59.35 E-value=16 Score=28.83 Aligned_cols=32 Identities=9% Similarity=0.301 Sum_probs=21.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
+..|+.|+|+.|++.... |.++| +.+..+++.
T Consensus 2 i~iY~~~~C~~crkA~~~-------L~~~g--i~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAW-------LEENQ--IDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHH-------HHHcC--CCeEEEEee
Confidence 456779999999995543 34455 445555554
No 472
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=59.18 E-value=48 Score=24.12 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=48.4
Q ss_pred cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018332 171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 250 (358)
Q Consensus 171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 250 (358)
++++=.|.+..-+-+...+..+.++.+++.. ..+++=.|.+-.. ..+++.+++.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~---g~y~LeVIDv~~q-----------------------P~lAE~~~Iv 56 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ---GVYALKVIDVLKN-----------------------PQLAEEDKIL 56 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC---CceEEEEEEcccC-----------------------HhHHhHCCEE
Confidence 4566566777777888888889988887764 4466666666543 6899999999
Q ss_pred ceeeEEEECCC
Q 018332 251 GIPALVLIGPD 261 (358)
Q Consensus 251 ~~P~~~lid~~ 261 (358)
++||++=..|.
T Consensus 57 ATPtLIK~~P~ 67 (87)
T TIGR02654 57 ATPTLSKILPP 67 (87)
T ss_pred EecHHhhcCCC
Confidence 99998877543
No 473
>PHA03075 glutaredoxin-like protein; Provisional
Probab=58.72 E-value=17 Score=27.84 Aligned_cols=37 Identities=19% Similarity=0.480 Sum_probs=28.1
Q ss_pred CEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 43 k~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
|.+++.|.-|.|+-|......+.++..+ .+++-||+-
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~lede-------Y~ilrVNIl 38 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDE-------YDILRVNIL 38 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcc-------ccEEEEEee
Confidence 6789999999999999887777554443 457777654
No 474
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=58.69 E-value=22 Score=27.20 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=21.9
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018332 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87 (358)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~ 87 (358)
..|+.++|+.|++....|+ ++| +++.++++..
T Consensus 3 ~iY~~~~C~~c~ka~~~L~-------~~g--i~~~~idi~~ 34 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLE-------EHQ--IPFEERNLFK 34 (115)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HCC--CceEEEecCC
Confidence 4567899999999665554 345 5566677654
No 475
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=58.43 E-value=5.7 Score=20.79 Aligned_cols=9 Identities=33% Similarity=1.283 Sum_probs=5.9
Q ss_pred EEcCCCCCC
Q 018332 337 FSCDVCNYD 345 (358)
Q Consensus 337 ~~~~~~~~~ 345 (358)
|+|..|+|-
T Consensus 1 y~C~~C~y~ 9 (24)
T PF13909_consen 1 YKCPHCSYS 9 (24)
T ss_dssp EE-SSSS-E
T ss_pred CCCCCCCCc
Confidence 789999975
No 476
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=58.08 E-value=20 Score=33.55 Aligned_cols=32 Identities=22% Similarity=0.613 Sum_probs=26.5
Q ss_pred CceeecCcCCCCcceEEEcCCCC-CC-CCccccc
Q 018332 321 KAYVCDCCKMRGRFWAFSCDVCN-YD-LHPKCVE 352 (358)
Q Consensus 321 ~~~~C~~C~e~g~~~~~~~~~~~-~~-~~~~~~~ 352 (358)
.-++|+.|.---..|.+.|..|. |+ |-|.=++
T Consensus 353 p~~~c~~cg~~~~~~~~~c~~c~~~~~~~~~~~~ 386 (389)
T PRK11788 353 PRYRCRNCGFTARTLYWHCPSCKAWETIKPIRGL 386 (389)
T ss_pred CCEECCCCCCCCccceeECcCCCCccCcCCcccC
Confidence 34889999999999999999999 77 6665443
No 477
>PRK10824 glutaredoxin-4; Provisional
Probab=57.54 E-value=9.2 Score=29.48 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=16.6
Q ss_pred CCEEEEEEeC----CCChhhhhhhHHHHH
Q 018332 42 GKTICLFFSA----NWCRPCKTFTPQLVQ 66 (358)
Q Consensus 42 gk~vlv~F~a----~wC~~C~~~~p~~~~ 66 (358)
.+.|+|+=-. ||||+|++....|.+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~ 42 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSA 42 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHH
Confidence 3455554333 699999997766654
No 478
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=57.31 E-value=54 Score=28.05 Aligned_cols=70 Identities=19% Similarity=0.339 Sum_probs=37.6
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCc---cccccCchhHHHHHHHcCCC
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPW---LAIPYEDRARQDLCRIFNIK 250 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~v~ 250 (358)
+=.|.+-.|..|...-..|.++.++ .++-.++..+|- ...++| ++-|......+..++.++..
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~------~~Vi~LafHVDY--------WDylGWkD~fa~~~~t~RQr~Y~~~~~~~ 67 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR------PDVIALAFHVDY--------WDYLGWKDPFASPEFTQRQRAYARRFGLR 67 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH------TSSEEEEEE-ST--------T-SSSS--TT--HHHHHHHHHHHHHTT-S
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC------CCEEEEEecCCc--------ccCCCCCCccCChhHHHHHHHHHHHhCCC
Confidence 4468899999999999999888776 346666666662 222222 11122223345666677765
Q ss_pred c--eeeEEE
Q 018332 251 G--IPALVL 257 (358)
Q Consensus 251 ~--~P~~~l 257 (358)
+ +|.++|
T Consensus 68 ~vYTPQ~vV 76 (202)
T PF06764_consen 68 SVYTPQVVV 76 (202)
T ss_dssp ---SSEEEE
T ss_pred CCcCCeEEE
Confidence 5 566654
No 479
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=57.30 E-value=13 Score=25.30 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=21.3
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018332 47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86 (358)
Q Consensus 47 v~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d 86 (358)
..|+.++|+.|++..-.+ ...|-+++.+.++..
T Consensus 2 ~ly~~~~~~~~~~v~~~l-------~~~gi~~~~~~v~~~ 34 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVL-------AEKGVSVEIIDVDPD 34 (73)
T ss_pred EEEECCCChhHHHHHHHH-------HHcCCccEEEEcCCC
Confidence 457789999999866543 334544666655544
No 480
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.17 E-value=23 Score=29.69 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=43.3
Q ss_pred ecCCCceeeecccCC--cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018332 156 LSRDHRKITVSELAG--KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214 (358)
Q Consensus 156 l~~~g~~~~l~~~~~--k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~ 214 (358)
++..|+.+.+.++-. +.|+...--+.|-.|+++...|.++..-+.+ .++..++|-.
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~---~Gv~Li~vg~ 92 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDE---LGVVLIAVGP 92 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHH---hCCEEEEEec
Confidence 467788999888743 5677777789999999999999998555554 6777777753
No 481
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=57.13 E-value=21 Score=27.06 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=32.5
Q ss_pred HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018332 193 IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK 250 (358)
Q Consensus 193 ~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 250 (358)
.+...++.+ .++.+|.|.+..... ..++..... ..+|+..|+...+.+.+++.
T Consensus 3 ~~~~~~l~~---~gv~lv~I~~g~~~~-~~~f~~~~~-~p~~ly~D~~~~lY~~lg~~ 55 (115)
T PF13911_consen 3 SRRKPELEA---AGVKLVVIGCGSPEG-IEKFCELTG-FPFPLYVDPERKLYKALGLK 55 (115)
T ss_pred hHhHHHHHH---cCCeEEEEEcCCHHH-HHHHHhccC-CCCcEEEeCcHHHHHHhCCc
Confidence 344455554 788999999876533 555554332 34455566667777777765
No 482
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=56.75 E-value=21 Score=30.16 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=45.3
Q ss_pred CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018332 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY 120 (358)
Q Consensus 41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~ 120 (358)
+..-|++.||-|.-..|+-|-.+|+.++..+-+ ..++.|+.... .-|+.+.+|+..
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~--------------------PFlv~kL~IkVL 138 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKA--------------------PFLVTKLNIKVL 138 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccC--------------------ceeeeeeeeeEe
Confidence 567889999999999999999999999887733 23444444322 368889999999
Q ss_pred Ccch
Q 018332 121 PFTR 124 (358)
Q Consensus 121 P~~~ 124 (358)
|+..
T Consensus 139 P~v~ 142 (211)
T KOG1672|consen 139 PTVA 142 (211)
T ss_pred eeEE
Confidence 9643
No 483
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=56.31 E-value=18 Score=27.31 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=16.0
Q ss_pred EEEeccCCcccHhhHHHHHH
Q 018332 175 LYFGAHWCPPCRSFTSQLIE 194 (358)
Q Consensus 175 v~F~a~wC~~C~~~~~~l~~ 194 (358)
..|+.++|+.|++....|.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46889999999987776654
No 484
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.24 E-value=34 Score=29.73 Aligned_cols=30 Identities=13% Similarity=0.031 Sum_probs=22.1
Q ss_pred EEEEEEe-CCCChhhhhhhHHHHHHHHHHhc
Q 018332 44 TICLFFS-ANWCRPCKTFTPQLVQLYDTLRT 73 (358)
Q Consensus 44 ~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~ 73 (358)
.+=|++| =+-||-|-...+.|+++-..+..
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~ 35 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYPQ 35 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcCc
Confidence 3444444 56788899999999998887764
No 485
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=55.97 E-value=7.5 Score=32.12 Aligned_cols=70 Identities=10% Similarity=0.228 Sum_probs=46.6
Q ss_pred ceecccccCcccccCCCCc--eecccCCCC-EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018332 16 FLTVLASEGVEFLLSRQGK--VPLSSCGGK-TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89 (358)
Q Consensus 16 ~~~~l~~~~~~~l~~~~g~--v~l~~~~gk-~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~ 89 (358)
+...+.....+.+...++. ..+.. .++ ++++.|..........+...+.+++++++.+ +.++.++++...
T Consensus 67 l~~fI~~~~~P~v~~~t~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~~ 139 (184)
T PF13848_consen 67 LKKFIKKNSFPLVPELTPENFEKLFS-SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDFP 139 (184)
T ss_dssp HHHHHHHHSSTSCEEESTTHHHHHHS-TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTTH
T ss_pred HHHHHHHhccccccccchhhHHHHhc-CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHhH
Confidence 5555556666666666665 33333 344 4888887766677888888888888888765 667777776433
No 486
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=55.85 E-value=21 Score=27.39 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=22.6
Q ss_pred EEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018332 176 YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD 217 (358)
Q Consensus 176 ~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~ 217 (358)
.|+.++|+.|++....|.+ .++.+..+.+..+
T Consensus 3 iY~~~~C~~c~ka~~~L~~----------~~i~~~~idi~~~ 34 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA----------NGIEYQFIDIGED 34 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH----------cCCceEEEecCCC
Confidence 5788999999988776654 3455666666544
No 487
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=55.80 E-value=64 Score=22.11 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=14.5
Q ss_pred EEEeccCCcccHhhHHHHHH
Q 018332 175 LYFGAHWCPPCRSFTSQLIE 194 (358)
Q Consensus 175 v~F~a~wC~~C~~~~~~l~~ 194 (358)
..|..+.|+.|++..-.|..
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~ 22 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDY 22 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHH
Confidence 35667889999987765543
No 488
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.48 E-value=21 Score=29.96 Aligned_cols=56 Identities=25% Similarity=0.404 Sum_probs=44.1
Q ss_pred ccCCCCc-eecccC--CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEe
Q 018332 28 LLSRQGK-VPLSSC--GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85 (358)
Q Consensus 28 l~~~~g~-v~l~~~--~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~ 85 (358)
..+..|+ |++.++ +.+.|+..-.=|.|--|++.+..|.++..-+...| +.+++|-.
T Consensus 34 ~l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~G--v~Li~vg~ 92 (197)
T KOG4498|consen 34 NLDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELG--VVLIAVGP 92 (197)
T ss_pred hhhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhC--CEEEEEec
Confidence 3677788 999987 35566666669999999999999999977778888 66766653
No 489
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=53.76 E-value=25 Score=26.57 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=15.8
Q ss_pred EeccCCcccHhhHHHHHHH
Q 018332 177 FGAHWCPPCRSFTSQLIEV 195 (358)
Q Consensus 177 F~a~wC~~C~~~~~~l~~l 195 (358)
||..+||.|......+...
T Consensus 2 ~YDg~C~lC~~~~~~l~~~ 20 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR 20 (114)
T ss_pred EECCCCHhHHHHHHHHHhc
Confidence 6788999999988877665
No 491
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=53.51 E-value=24 Score=27.77 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=26.2
Q ss_pred EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC---HHHHHHhhh
Q 018332 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD---HKEFDLNHS 226 (358)
Q Consensus 174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~---~~~~~~~~~ 226 (358)
+..|..++|+.|++....|.+ .++.+-.+.+..+ .+++..++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~----------~gi~~~~idi~~~~~~~~eL~~~l~ 47 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE----------HDIPFTERNIFSSPLTIDEIKQILR 47 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH----------cCCCcEEeeccCChhhHHHHHHHHH
Confidence 346788999999987766644 3344555555433 345555554
No 492
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=53.47 E-value=20 Score=29.84 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=26.4
Q ss_pred EEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018332 176 YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214 (358)
Q Consensus 176 ~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~ 214 (358)
.|..|.|+.|-...|.+.++..+|. ..+.+-+|..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~----~~i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYG----NKIEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-----TTEEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcC----CcEEEEEEEc
Confidence 5889999999999999999999998 5566666643
No 493
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=53.06 E-value=32 Score=30.40 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=28.6
Q ss_pred CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhc
Q 018332 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKT 201 (358)
Q Consensus 169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~ 201 (358)
.||+.+++..+-|||.|..+.-.|-....+|..
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 489999999999999999998888777777753
No 494
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=52.56 E-value=58 Score=21.93 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=12.9
Q ss_pred EEeccCCcccHhhHHHHH
Q 018332 176 YFGAHWCPPCRSFTSQLI 193 (358)
Q Consensus 176 ~F~a~wC~~C~~~~~~l~ 193 (358)
.++..+|++|.+..-.|.
T Consensus 3 Ly~~~~~p~~~rvr~~L~ 20 (71)
T cd03037 3 LYIYEHCPFCVKARMIAG 20 (71)
T ss_pred eEecCCCcHhHHHHHHHH
Confidence 356788999997665554
No 495
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=52.48 E-value=85 Score=22.56 Aligned_cols=28 Identities=11% Similarity=-0.032 Sum_probs=19.8
Q ss_pred CcEEEEEEeccCCcccHhhHHHHHHHHHHhh
Q 018332 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELK 200 (358)
Q Consensus 170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~ 200 (358)
.++++|-|+..++. .....+.++++.++
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r 44 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLR 44 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcc
Confidence 46788888888765 45566777777775
No 496
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=51.83 E-value=12 Score=28.20 Aligned_cols=17 Identities=24% Similarity=0.698 Sum_probs=13.9
Q ss_pred cceEEEcCCCC--CCCCcc
Q 018332 333 RFWAFSCDVCN--YDLHPK 349 (358)
Q Consensus 333 ~~~~~~~~~~~--~~~~~~ 349 (358)
..|.|.|..|+ -++||.
T Consensus 28 ~~~~y~C~~C~AyVG~H~~ 46 (102)
T PF11672_consen 28 GPYLYVCTPCDAYVGCHPG 46 (102)
T ss_pred CceeEECCCCCceeeeeCC
Confidence 35679999999 679984
No 497
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=50.14 E-value=7.1 Score=26.99 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=11.8
Q ss_pred eeeeecCCceeecCcCCCCcceEEEcCCCC
Q 018332 314 ELKLDMAKAYVCDCCKMRGRFWAFSCDVCN 343 (358)
Q Consensus 314 ~~~~~~~~~~~C~~C~e~g~~~~~~~~~~~ 343 (358)
++.|.. +.|.|..|+.. ....-.|.+|+
T Consensus 10 ~L~~~~-~~~~C~~C~~~-~~~~a~CPdC~ 37 (70)
T PF07191_consen 10 ELEWQG-GHYHCEACQKD-YKKEAFCPDCG 37 (70)
T ss_dssp BEEEET-TEEEETTT--E-EEEEEE-TTT-
T ss_pred ccEEeC-CEEECcccccc-ceecccCCCcc
Confidence 345543 55666666652 23333455555
No 498
>PF10851 DUF2652: Protein of unknown function (DUF2652) ; InterPro: IPR020503 This entry contains proteins with no known function.
Probab=49.39 E-value=18 Score=27.62 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=30.1
Q ss_pred cccccCCCCceecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHh
Q 018332 25 VEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLR 72 (358)
Q Consensus 25 ~~~l~~~~g~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~ 72 (358)
++.+++.++.+++++++|..+ .||++.-.+...+..++..+-+.+.
T Consensus 5 LE~iI~an~~l~lseiEGDAi--lFy~~~~~~~~~v~~q~~~M~~aF~ 50 (116)
T PF10851_consen 5 LEAIIDANLGLKLSEIEGDAI--LFYKYGKDTSVEVCRQCERMRRAFH 50 (116)
T ss_pred HHHHHccCCCcEEEEecccEE--EEEcCCCCccHHHHHHHHHHHHHHH
Confidence 345778884499999999986 5787766554444444444444443
No 499
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=49.15 E-value=1.1e+02 Score=24.18 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCceeeEEEECCCC
Q 018332 240 RQDLCRIFNIKGIPALVLIGPDG 262 (358)
Q Consensus 240 ~~~l~~~~~v~~~P~~~lid~~G 262 (358)
+..+.++|+|+.+|++++...++
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCC
Confidence 57889999999999999995443
No 500
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=48.56 E-value=1.6e+02 Score=28.60 Aligned_cols=106 Identities=10% Similarity=0.081 Sum_probs=61.2
Q ss_pred CCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH-------------------
Q 018332 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK------------------- 219 (358)
Q Consensus 159 ~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~------------------- 219 (358)
++..+++.+++|..-+|....+- .++..-+...+...+++.+ .++-||-|..+.+.+
T Consensus 285 ~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~---r~VlvVPv~~~~~~~~~~~~~gfg~~s~~a~~~p 360 (453)
T PLN03098 285 TNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLK---RGVLLIPVVWGENKDPQPKKKGFGRSSKAAASLP 360 (453)
T ss_pred CCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHH---cCcEEEEEecCCCCccccccccccccchhhhcCC
Confidence 46789999999965444444443 3444445555556666665 788888887753211
Q ss_pred ----HHHHh---------h-hcCCccccccCchh-HHHHHHH---cCCC-ceeeEEEECCCCcEEecC
Q 018332 220 ----EFDLN---------H-SIMPWLAIPYEDRA-RQDLCRI---FNIK-GIPALVLIGPDGKTISTN 268 (358)
Q Consensus 220 ----~~~~~---------~-~~~~~~~~~~~~~~-~~~l~~~---~~v~-~~P~~~lid~~G~v~~~~ 268 (358)
++.+. + ...+|...|+..+. ..-+.++ =|+. +.|.++.+-.||+|+.++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~q~~~~gv~~~~~vyi~lr~dGrVr~SG 428 (453)
T PLN03098 361 SIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRSG 428 (453)
T ss_pred CccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHHHHHhcCCCCCCceEEEEeeCCeEecCC
Confidence 11111 1 13457777776432 2222222 2332 347889999999999774
Done!