Query 018333
Match_columns 358
No_of_seqs 136 out of 304
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05633 DUF793: Protein of un 100.0 1E-66 2.3E-71 505.7 12.7 322 17-338 5-389 (389)
2 PF03087 DUF241: Arabidopsis p 100.0 4.3E-33 9.3E-38 258.3 0.7 224 74-337 2-231 (231)
3 PF05055 DUF677: Protein of un 99.9 8E-26 1.7E-30 218.8 0.6 294 43-338 1-336 (336)
4 TIGR02894 DNA_bind_RsfA transc 56.9 48 0.001 29.2 6.9 98 236-333 48-154 (161)
5 PF10805 DUF2730: Protein of u 53.3 40 0.00086 27.4 5.6 54 269-322 44-97 (106)
6 PHA01750 hypothetical protein 46.2 25 0.00054 26.2 3.0 8 309-316 61-68 (75)
7 PF10393 Matrilin_ccoil: Trime 43.3 40 0.00087 23.5 3.5 24 297-320 23-46 (47)
8 PF06825 HSBP1: Heat shock fac 36.5 85 0.0018 22.5 4.4 25 295-319 26-50 (54)
9 KOG0994 Extracellular matrix g 36.4 1.2E+02 0.0026 34.8 7.5 92 237-328 1167-1263(1758)
10 PF09969 DUF2203: Uncharacteri 32.7 1.2E+02 0.0027 25.2 5.6 42 295-336 48-95 (120)
11 PF03087 DUF241: Arabidopsis p 32.2 49 0.0011 30.7 3.4 24 297-320 198-221 (231)
12 PF13887 MRF_C1: Myelin gene r 31.9 42 0.0009 22.0 2.0 22 297-318 14-35 (36)
13 PF01601 Corona_S2: Coronaviru 31.3 1.2E+02 0.0025 32.3 6.2 67 269-340 268-339 (610)
14 PF04380 BMFP: Membrane fusoge 30.0 1.3E+02 0.0028 23.0 4.9 31 289-319 49-79 (79)
15 PF04508 Pox_A_type_inc: Viral 28.7 28 0.0006 20.5 0.7 16 309-324 6-21 (23)
16 PF10157 DUF2365: Uncharacteri 27.5 1.1E+02 0.0023 26.7 4.4 109 6-129 17-129 (149)
17 PHA01750 hypothetical protein 26.6 1.5E+02 0.0033 22.1 4.4 14 295-308 61-74 (75)
18 PF02403 Seryl_tRNA_N: Seryl-t 25.9 1E+02 0.0022 24.6 3.9 34 291-324 68-101 (108)
19 PF07956 DUF1690: Protein of U 24.4 81 0.0018 27.1 3.1 88 245-343 35-125 (142)
20 PF15546 DUF4653: Domain of un 24.1 55 0.0012 29.8 2.1 44 301-344 190-233 (239)
21 PF09177 Syntaxin-6_N: Syntaxi 24.0 3.2E+02 0.007 21.4 6.4 28 294-321 36-63 (97)
22 PF05377 FlaC_arch: Flagella a 23.9 2.5E+02 0.0054 20.2 5.0 46 267-321 7-52 (55)
23 KOG0971 Microtubule-associated 23.4 1.9E+02 0.0042 32.4 6.3 29 293-321 413-441 (1243)
24 PF05531 NPV_P10: Nucleopolyhe 22.6 1.3E+02 0.0029 23.0 3.6 26 299-324 37-62 (75)
25 PF05064 Nsp1_C: Nsp1-like C-t 22.2 1.1E+02 0.0023 25.3 3.4 37 292-328 73-109 (116)
26 PF07106 TBPIP: Tat binding pr 21.5 1.8E+02 0.004 25.3 5.0 26 294-319 113-138 (169)
27 KOG3335 Predicted coiled-coil 21.4 1.9E+02 0.004 25.9 4.8 58 291-348 100-157 (181)
28 KOG3684 Ca2+-activated K+ chan 20.4 1.4E+02 0.0031 30.7 4.4 62 264-325 400-462 (489)
29 PLN02320 seryl-tRNA synthetase 20.2 1.1E+02 0.0025 31.8 3.8 33 292-324 132-164 (502)
No 1
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=100.00 E-value=1e-66 Score=505.73 Aligned_cols=322 Identities=39% Similarity=0.612 Sum_probs=289.1
Q ss_pred CCCCCCCcccccc------CCCCC--CCHHHHHHHHHHHHHHHHHHHhhCCCCc--cceeeehHHHHHHHHHHhhhhhHH
Q 018333 17 PFFPFGNPFRMMS------PKGSR--LSPKLVSLLADFEETLAERLRKLMPKDK--DDILNLSWMRLAMESLCETHNVIK 86 (358)
Q Consensus 17 ~~~~~~~~~~~~~------~~~~~--~~~~~~p~l~~F~~~L~~rl~~L~~~~~--~~~lSl~wl~~~l~~L~~~h~~~~ 86 (358)
-|.+||+++.+++ |..+| .++.+++.++.|++++++||.+|.++.. ++++|++||+++|+.++.||++|.
T Consensus 5 ~~~~~~~s~ls~rr~~~~~~~~~~~~~~~~~~~~L~~Fq~~va~rl~~L~~~~~~~~~~LSL~W~~~~ld~~l~~~~efr 84 (389)
T PF05633_consen 5 DYQGFGRSLLSLRRDQVHSMSHNHEQEAESLEAELEAFQRHVAERLSDLSPSSKDSDDFLSLSWMRKALDSFLCCHEEFR 84 (389)
T ss_pred ccccccchhhhccccCCCCCCCCcccccccchhhHHHHHHHHHHHHHHhccCcCcccccccHHHHHHHHHHHHHHHHHHH
Confidence 3445788777665 33333 3455778999999999999999998853 689999999999999999999999
Q ss_pred HHhhhccc-cCC-CccccceeeeeecchhhhHHHHHhhhhhhhcccccchhhhhhhhcCCC---CccchhhhhccchhHH
Q 018333 87 DLITELEL-PVS-DWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS---SPTQFGRACSSLDNWR 161 (358)
Q Consensus 87 ~Li~~~~l-p~~-~~~~k~VdeyLd~SlkLLDvCna~k~~l~~~~~~~~~lq~al~~l~~~---~~~~~~ra~~~l~~~~ 161 (358)
.+|++++. |++ +|++|||+||||+|+|+|||||+++++|+++++|++.+++|+|.+++. ++++++||+++|.+|.
T Consensus 85 ~li~~~~~~~~s~~~~dk~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~~~~~~~~~rRAr~aL~dl~ 164 (389)
T PF05633_consen 85 ALITNLRDLPLSKPPDDKWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHALDSSRPLGEGQLRRARKALSDLK 164 (389)
T ss_pred HHHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 99999987 988 789999999999999999999999999999999999999999999987 7899999999999998
Q ss_pred hhh-----------ccCCCchh--------------------------------hhHHHHHhhhhcCCccccccccchhh
Q 018333 162 EHI-----------SSKNPRVE--------------------------------SCRSILDNLVASLDLPKVKNSAKGKV 198 (358)
Q Consensus 162 ~~~-----------~~~~~~i~--------------------------------~~~~~L~~~~~~l~~~k~~~~~~~~~ 198 (358)
..| .++|+.++ +|.++|+.|.++|..||.++++++++
T Consensus 165 ~~~~~~~~~~~~~~~~rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~m~~nL~~Pk~~esak~~g 244 (389)
T PF05633_consen 165 IAMLDDKDSGSSGGSHRNRSFGRSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQAMGENLVLPKGKESAKGRG 244 (389)
T ss_pred HHHhcccccCcccccccccccccccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHHHHhcCCCCCCccccccch
Confidence 766 12343221 26789999999999999999999999
Q ss_pred HHHhhhcceeeEEeeehhhhhhhccCcccc-cccc-cCCCCcchHhhHHHHHhhhHHHHHHhccccchhhhhhhhhhhHH
Q 018333 199 LMRAMYGVKVLTVFVCSIFAAAFSGSAKNL-LELN-VSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSV 276 (358)
Q Consensus 199 l~~~l~~~~~vt~~v~~~Ll~ais~~~~~~-~~~~-vp~~~~Ws~~~~~lq~rv~~e~~~~~~~~~~~~l~El~~vdaav 276 (358)
++.++|+|++||+||||+|++||+|+++.+ .+++ +|+++.|+.++..||++|++|+++++++|+++.++||++|++++
T Consensus 245 L~~A~Y~m~~vtvFV~~vlVAA~pc~~rgL~~~l~~vP~~~~WA~s~~~LQ~rI~eEikkk~~kgs~gLLkEl~~ve~~v 324 (389)
T PF05633_consen 245 LLRAMYGMKSVTVFVCWVLVAAFPCQDRGLQVHLSAVPRQFSWAPSFISLQERINEEIKKKERKGSCGLLKELQQVEASV 324 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHeeecCCccccCCCCCCccccccchHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHH
Confidence 999999999999999999999999998755 5888 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh---ccchhHHHHHHHHHHHHhhhhhhhhhhhhhHhhhccceeeEEeeccceeeccc
Q 018333 277 KKLYEVIQN---EVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNL 338 (358)
Q Consensus 277 ~~L~~~i~~---~~~~~~~e~~~~~veel~~~~e~Le~gle~Le~~v~~lFr~li~~R~~LL~~l 338 (358)
++|+..++. +...|+.+++++.|+||++.|+.|++|||+|++|||++||+||++|+++|+.|
T Consensus 325 r~L~el~d~~~~p~~~e~~~ev~~~V~EL~~~~~~L~~GLdpLerqVre~Fh~IV~sR~elLd~l 389 (389)
T PF05633_consen 325 RELHELIDSFQFPLEEEKEEEVREAVEELARVCEALSQGLDPLERQVREVFHRIVRSRTELLDSL 389 (389)
T ss_pred HHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhHHHHhcC
Confidence 999988776 34567788999999999999999999999999999999999999999999975
No 2
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=99.97 E-value=4.3e-33 Score=258.27 Aligned_cols=224 Identities=21% Similarity=0.340 Sum_probs=178.1
Q ss_pred HHHHHHhhhhhHHHHhhhccccCC------CccccceeeeeecchhhhHHHHHhhhhhhhcccccchhhhhhhhcCCCCc
Q 018333 74 AMESLCETHNVIKDLITELELPVS------DWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSP 147 (358)
Q Consensus 74 ~l~~L~~~h~~~~~Li~~~~lp~~------~~~~k~VdeyLd~SlkLLDvCna~k~~l~~~~~~~~~lq~al~~l~~~~~ 147 (358)
.|..|.++|+|+++|+ ++|.+ +. ++|||++||+|++|||+|++++|.+.++|+++++||+|+++.++ ++
T Consensus 2 gL~~L~~Ly~~~~ell---~lp~tq~al~~~~-~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRRr~~-~~ 76 (231)
T PF03087_consen 2 GLSGLKDLYECLEELL---QLPSTQQALSHHQ-EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRRRDD-GS 76 (231)
T ss_pred chhHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hh
Confidence 5788999999999999 99987 34 79999999999999999999999999999999999999999983 22
Q ss_pred cchhhhhccchhHHhhhccCCCchhhhHHHHHhhhhcCCccccccccchhhHHHhhhcceeeEEeeehhhhhhhccCccc
Q 018333 148 TQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKN 227 (358)
Q Consensus 148 ~~~~ra~~~l~~~~~~~~~~~~~i~~~~~~L~~~~~~l~~~k~~~~~~~~~l~~~l~~~~~vt~~v~~~Ll~ais~~~~~ 227 (358)
+.-.+++|..+++.+ +|.+.|+...|+.+.++ ..+-..+...+..++.+++++..+|+.+|.+++.+++.|...
T Consensus 77 --~~~~i~sy~~~rKk~---kK~i~K~~~~lk~~~~~-~~~~~~~~~~~~~vv~~l~ea~~~t~si~~sll~~ls~~~~~ 150 (231)
T PF03087_consen 77 --IESEIASYIRSRKKA---KKEIAKLLRSLKRMSNK-SSSSNDDDEHLSAVVRVLREAREITVSIFESLLSFLSSPSKK 150 (231)
T ss_pred --HHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcc-cCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 444455566666666 55788888888888876 222111111245689999999999999999999999986544
Q ss_pred ccccccCCCCcchHhhHHHHHhhhHHHHHHhccccchhhhhhhhhhhHHHHHHHHhhhccchhHHHHHHHHHHHHhhhhh
Q 018333 228 LLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRAD 307 (358)
Q Consensus 228 ~~~~~vp~~~~Ws~~~~~lq~rv~~e~~~~~~~~~~~~l~El~~vdaav~~L~~~i~~~~~~~~~e~~~~~veel~~~~e 307 (358)
|+..+|+...+.++++..++... ...+|++.++.+... +. +.++..++.+|
T Consensus 151 ------~~~~~wslvsk~~~~~~~~~~~~-------~~~~e~~~~d~~~~~---------~~-------e~~~~~~~~Le 201 (231)
T PF03087_consen 151 ------SKSSKWSLVSKLMQKKRSCDSSE-------ENRNEFEKVDAALKS---------DE-------EEVQNAQKRLE 201 (231)
T ss_pred ------ccccchhHHHHHHhcccccchhH-------HHHHHHHHHHHHhhh---------hh-------HHHHHHHHHHH
Confidence 56678998777777665322111 246899999987643 11 23778888999
Q ss_pred hhhhhhhhHhhhccceeeEEeeccceeecc
Q 018333 308 NLSQGLDHLTKAVDGFFKIVLSGRDALLCN 337 (358)
Q Consensus 308 ~Le~gle~Le~~v~~lFr~li~~R~~LL~~ 337 (358)
+||.+|++||.++|++||+||++|++||||
T Consensus 202 ~LE~~Ie~lE~glE~vFR~LIktRVSLLNI 231 (231)
T PF03087_consen 202 ELEECIEELEEGLECVFRRLIKTRVSLLNI 231 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999997
No 3
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=99.91 E-value=8e-26 Score=218.78 Aligned_cols=294 Identities=19% Similarity=0.303 Sum_probs=222.5
Q ss_pred HHHHHHHHHHHHHhhCCCC--cc--ceeeehHHHHHHHHHHhhhhhHHHHhhhccccCCCccc----cceeeeeecchhh
Q 018333 43 LADFEETLAERLRKLMPKD--KD--DILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDE----KWIDVYLDISVNL 114 (358)
Q Consensus 43 l~~F~~~L~~rl~~L~~~~--~~--~~lSl~wl~~~l~~L~~~h~~~~~Li~~~~lp~~~~~~----k~VdeyLd~SlkL 114 (358)
+++||+.|++|++.++.+. +. ..+|++++.+..++|+++++++.+.|++++.. .|++ .+|.+|||.|.+.
T Consensus 1 l~~fd~~l~~~t~~~i~sl~~~~~~~s~s~~s~~~~t~~Lle~~Qevv~~ile~~~d--i~~~~~L~~Lv~~YFd~S~~a 78 (336)
T PF05055_consen 1 LQSFDSSLQERTNRVISSLATGVETRSLSFDSLKEVTECLLEMNQEVVKVILECKKD--IWKNPELFRLVSDYFDSSLEA 78 (336)
T ss_pred CCCccHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHhCCChHHHHHHHHHHHH--hhcChhHHHHHHHHHHhhHHH
Confidence 4689999999999999874 22 35789999999999999999999999998877 5655 4999999999999
Q ss_pred hHHHHHhhhhhhhcccccchhhhhhhhcCCCCcc-----chhhhhccchhHHhhhccCCCchhh-hHHHHHh-------h
Q 018333 115 LDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPT-----QFGRACSSLDNWREHISSKNPRVES-CRSILDN-------L 181 (358)
Q Consensus 115 LDvCna~k~~l~~~~~~~~~lq~al~~l~~~~~~-----~~~ra~~~l~~~~~~~~~~~~~i~~-~~~~L~~-------~ 181 (358)
+|+|+++..||.++|..++.++.|+..++..+.+ .-.++.++|.++.++...+||+... ...+++. |
T Consensus 79 ~~~C~~L~k~I~~aR~~~~~I~~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~L 158 (336)
T PF05055_consen 79 SDFCEALLKCIHRARDNYLPIRRALKQFEKESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSL 158 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccchhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999765322 1255667889999999999996443 3333322 2
Q ss_pred hhcCCcc-----ccccccch-hhHHHhhhcceeeEEeeehhhhhhhccCcc-ccc-ccccCCC--CcchH-hhHHHHHhh
Q 018333 182 VASLDLP-----KVKNSAKG-KVLMRAMYGVKVLTVFVCSIFAAAFSGSAK-NLL-ELNVSDT--LPWAP-AFSALQANV 250 (358)
Q Consensus 182 ~~~l~~~-----k~~~~~~~-~~l~~~l~~~~~vt~~v~~~Ll~ais~~~~-~~~-~~~vp~~--~~Ws~-~~~~lq~rv 250 (358)
.++|+.. |+....++ +.++++++.+.++++.|+++++++++.|+. .++ ...+|-. ++|.. .+.++...+
T Consensus 159 l~kL~~~k~Kl~kklk~~r~~~kvs~v~fvaa~~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~gkw~~~~~~k~~~al 238 (336)
T PF05055_consen 159 LEKLDSRKKKLRKKLKLVRTWRKVSNVCFVAAFVAVAIASVVAAAHAVPAVVALAAALAAPIGSVGKWCGSLWKKYEEAL 238 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccchHHHhHHHHHHHHHHHHHH
Confidence 2233221 22122333 568889999999999999999999976653 222 2334543 45743 444443332
Q ss_pred hH--HHHHHhccccchhhhhhhhhhhHHHHHHHHhhhc-------cc-hhHHHHHHHHHHHHhhhhhhhhhhhhhHhhhc
Q 018333 251 NA--EVRNILSSGRATVLNELEAVDGSVKKLYEVIQNE-------VD-TVEEELLQKSVLDLGKRADNLSQGLDHLTKAV 320 (358)
Q Consensus 251 ~~--e~~~~~~~~~~~~l~El~~vdaav~~L~~~i~~~-------~~-~~~~e~~~~~veel~~~~e~Le~gle~Le~~v 320 (358)
.. +.-....+|++++.++|+.|...|.+|..+|+.. +. .++...++..|++++++.+.|.+-||+||+++
T Consensus 239 ~~~~~~l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv 318 (336)
T PF05055_consen 239 KKQKEQLDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHV 318 (336)
T ss_pred HHHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 21 1111223699999999999999999999998762 11 12234689999999999999999999999999
Q ss_pred cceeeEEeeccceeeccc
Q 018333 321 DGFFKIVLSGRDALLCNL 338 (358)
Q Consensus 321 ~~lFr~li~~R~~LL~~l 338 (358)
.-||+.|-++|..+|+-|
T Consensus 319 ~lC~~tInrAR~lVlq~I 336 (336)
T PF05055_consen 319 YLCFKTINRARTLVLQEI 336 (336)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999988743
No 4
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=56.91 E-value=48 Score=29.20 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=51.2
Q ss_pred CCcchHhh-HHHHHhhhHHHHHHhccccchhhhhhhhhhhHHHHHHHHhhhc--cc------hhHHHHHHHHHHHHhhhh
Q 018333 236 TLPWAPAF-SALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNE--VD------TVEEELLQKSVLDLGKRA 306 (358)
Q Consensus 236 ~~~Ws~~~-~~lq~rv~~e~~~~~~~~~~~~l~El~~vdaav~~L~~~i~~~--~~------~~~~e~~~~~veel~~~~ 306 (358)
||+|++.+ +.|++.|..--+.+.........-.++.|=.-++.+....... .. .++.+.++..++.|++..
T Consensus 48 GFRWNs~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~ 127 (161)
T TIGR02894 48 GFRWNAYVRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKEL 127 (161)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58997655 5577777432222211111112223555555555555421100 00 022334566677777777
Q ss_pred hhhhhhhhhHhhhccceeeEEeeccce
Q 018333 307 DNLSQGLDHLTKAVDGFFKIVLSGRDA 333 (358)
Q Consensus 307 e~Le~gle~Le~~v~~lFr~li~~R~~ 333 (358)
+.|...+..+++.-..|+..+=++|..
T Consensus 128 ~~L~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 128 EKLRQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777666666653
No 5
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=53.34 E-value=40 Score=27.41 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=37.6
Q ss_pred hhhhhhHHHHHHHHhhhccchhHHHHHHHHHHHHhhhhhhhhhhhhhHhhhccc
Q 018333 269 LEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDG 322 (358)
Q Consensus 269 l~~vdaav~~L~~~i~~~~~~~~~e~~~~~veel~~~~e~Le~gle~Le~~v~~ 322 (358)
+...+.-+..+...++.--+.++...++..+.++...+..++..+++++.+++-
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 444466666666555542123556678888999999999999999998877653
No 6
>PHA01750 hypothetical protein
Probab=46.22 E-value=25 Score=26.18 Aligned_cols=8 Identities=25% Similarity=0.600 Sum_probs=2.8
Q ss_pred hhhhhhhH
Q 018333 309 LSQGLDHL 316 (358)
Q Consensus 309 Le~gle~L 316 (358)
+++.+.++
T Consensus 61 l~~qv~ei 68 (75)
T PHA01750 61 LSRQVEEI 68 (75)
T ss_pred HHHHHHHH
Confidence 33333333
No 7
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=43.25 E-value=40 Score=23.46 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=16.5
Q ss_pred HHHHHHhhhhhhhhhhhhhHhhhc
Q 018333 297 KSVLDLGKRADNLSQGLDHLTKAV 320 (358)
Q Consensus 297 ~~veel~~~~e~Le~gle~Le~~v 320 (358)
..++.|..+++.+...|+.||.++
T Consensus 23 ~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 23 SALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456667777777777777777653
No 8
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=36.55 E-value=85 Score=22.51 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=12.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHhhh
Q 018333 295 LQKSVLDLGKRADNLSQGLDHLTKA 319 (358)
Q Consensus 295 ~~~~veel~~~~e~Le~gle~Le~~ 319 (358)
+-.+++++.++++.||..|.+|-.+
T Consensus 26 I~~riDeM~~RIDdLE~si~dl~~q 50 (54)
T PF06825_consen 26 ILGRIDEMSSRIDDLEKSIADLMTQ 50 (54)
T ss_dssp HHHHHHHHHHHHHCCHHHH------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4455666666666666666665444
No 9
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=36.36 E-value=1.2e+02 Score=34.83 Aligned_cols=92 Identities=9% Similarity=0.224 Sum_probs=57.1
Q ss_pred CcchHhhHHHHHhhhHHH---HHHhccccc-hhhhhhhhhhhHHHHHHHHhhh-ccchhHHHHHHHHHHHHhhhhhhhhh
Q 018333 237 LPWAPAFSALQANVNAEV---RNILSSGRA-TVLNELEAVDGSVKKLYEVIQN-EVDTVEEELLQKSVLDLGKRADNLSQ 311 (358)
Q Consensus 237 ~~Ws~~~~~lq~rv~~e~---~~~~~~~~~-~~l~El~~vdaav~~L~~~i~~-~~~~~~~e~~~~~veel~~~~e~Le~ 311 (358)
..|...+..|+.|...=+ ++....|.. +--.+|..++..++..+..+.. .+..+..+.+....++|++.+.++.+
T Consensus 1167 ~~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e 1246 (1758)
T KOG0994|consen 1167 QTWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTE 1246 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 369888888877653211 111112222 3347788888888777766643 23335566677777777777777777
Q ss_pred hhhhHhhhccceeeEEe
Q 018333 312 GLDHLTKAVDGFFKIVL 328 (358)
Q Consensus 312 gle~Le~~v~~lFr~li 328 (358)
.|-.+|..+.++...+-
T Consensus 1247 ~L~~~E~~Lsdi~~~~~ 1263 (1758)
T KOG0994|consen 1247 DLPQEEETLSDITNSLP 1263 (1758)
T ss_pred hhhhhhhhhhhhhhccc
Confidence 77777777766665544
No 10
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=32.69 E-value=1.2e+02 Score=25.22 Aligned_cols=42 Identities=29% Similarity=0.536 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHhhhccce------eeEEeeccceeec
Q 018333 295 LQKSVLDLGKRADNLSQGLDHLTKAVDGF------FKIVLSGRDALLC 336 (358)
Q Consensus 295 ~~~~veel~~~~e~Le~gle~Le~~v~~l------Fr~li~~R~~LL~ 336 (358)
.+..++.+...+..+-.-|+.+..+|.++ |--++.+|...|+
T Consensus 48 ~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~~~gLvDFPa~~dg~~v~LC 95 (120)
T PF09969_consen 48 LEAELEELEARLRELIDEIEELGVEVKDLDPGLVDFPAKLDGREVYLC 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcEEeCCcceeEeCCcccCCCEEEEE
Confidence 34445555555555566677777777777 6777788888887
No 11
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=32.16 E-value=49 Score=30.73 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=19.2
Q ss_pred HHHHHHhhhhhhhhhhhhhHhhhc
Q 018333 297 KSVLDLGKRADNLSQGLDHLTKAV 320 (358)
Q Consensus 297 ~~veel~~~~e~Le~gle~Le~~v 320 (358)
+.+++|+.+++.||.|+|.+.+.+
T Consensus 198 ~~Le~LE~~Ie~lE~glE~vFR~L 221 (231)
T PF03087_consen 198 KRLEELEECIEELEEGLECVFRRL 221 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447788888999999999887653
No 12
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=31.87 E-value=42 Score=21.95 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=17.7
Q ss_pred HHHHHHhhhhhhhhhhhhhHhh
Q 018333 297 KSVLDLGKRADNLSQGLDHLTK 318 (358)
Q Consensus 297 ~~veel~~~~e~Le~gle~Le~ 318 (358)
.+|++|-+.-+.|+..||++|+
T Consensus 14 ~AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 14 GAVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHHhccHHHHHHHHhh
Confidence 4588888888888888888764
No 13
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=31.29 E-value=1.2e+02 Score=32.34 Aligned_cols=67 Identities=15% Similarity=0.299 Sum_probs=34.9
Q ss_pred hhhhhhHHHHHHHHhhhccchhHHHHHHHHHHHHhhhhhhhhhhhhhHhhhccce-----eeEEeeccceeeccccc
Q 018333 269 LEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGF-----FKIVLSGRDALLCNLRA 340 (358)
Q Consensus 269 l~~vdaav~~L~~~i~~~~~~~~~e~~~~~veel~~~~e~Le~gle~Le~~v~~l-----Fr~li~~R~~LL~~l~~ 340 (358)
|..+..|+.++...+ ..+.+.+...+..|....++....|+++-..+|.+ =+|||.||.+-||.+-.
T Consensus 268 ~~t~~~Al~KiQ~VV-----N~q~~aL~~L~~qL~nnF~AISssI~dIy~RLd~leAdaQVDRLItGRL~aLnafVt 339 (610)
T PF01601_consen 268 FTTTASALNKIQDVV-----NQQGQALNQLTSQLSNNFGAISSSIQDIYNRLDQLEADAQVDRLITGRLAALNAFVT 339 (610)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHH
Confidence 455555555554432 24556778888899999999998888887777666 48899999999997744
No 14
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=30.04 E-value=1.3e+02 Score=23.04 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhHhhh
Q 018333 289 TVEEELLQKSVLDLGKRADNLSQGLDHLTKA 319 (358)
Q Consensus 289 ~~~~e~~~~~veel~~~~e~Le~gle~Le~~ 319 (358)
.++-+..+..+..++.+++.||..+..||.+
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3555667777888888888888888887753
No 15
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=28.72 E-value=28 Score=20.54 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=8.1
Q ss_pred hhhhhhhHhhhcccee
Q 018333 309 LSQGLDHLTKAVDGFF 324 (358)
Q Consensus 309 Le~gle~Le~~v~~lF 324 (358)
+...|.+||.+++.++
T Consensus 6 lr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 6 LRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444455555555554
No 16
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=27.54 E-value=1.1e+02 Score=26.71 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=58.8
Q ss_pred eec-CCCCCCCCCCCCCCCccccccCCCCCCC---HHHHHHHHHHHHHHHHHHHhhCCCCccceeeehHHHHHHHHHHhh
Q 018333 6 IKM-SRPQDPHRPFFPFGNPFRMMSPKGSRLS---PKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCET 81 (358)
Q Consensus 6 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~l~~F~~~L~~rl~~L~~~~~~~~lSl~wl~~~l~~L~~~ 81 (358)
|++ ++|+.+++...+.+ +.-....++.+.| +.-...++.==..+++.++.|..+. ..++.+|....--...+
T Consensus 17 Ir~s~~~~~~~s~~~~~~-~~~~~~~~~~~~P~id~~~L~~LE~~a~~ia~svd~ll~~L---~~~L~~mS~~Tv~~~~~ 92 (149)
T PF10157_consen 17 IRLSSSPSSSPSSSSSPS-SLTPRQLPSPSIPPIDPAVLHDLERDAQAIAESVDSLLRSL---RSSLHSMSAITVEHMET 92 (149)
T ss_pred HHhccCCCCCCcCcCCCC-CCccccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 443 35555555444444 2222222333355 3333444444456777777776553 23466666666666666
Q ss_pred hhhHHHHhhhccccCCCccccceeeeeecchhhhHHHHHhhhhhhhcc
Q 018333 82 HNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVS 129 (358)
Q Consensus 82 h~~~~~Li~~~~lp~~~~~~k~VdeyLd~SlkLLDvCna~k~~l~~~~ 129 (358)
|++...-+ . ..||....+.-.|+.-|.-+.+.+..+.
T Consensus 93 y~~sv~~~---c--------dsvD~sik~~y~liakceELn~~M~~v~ 129 (149)
T PF10157_consen 93 YKDSVDKL---C--------DSVDASIKSMYTLIAKCEELNESMKPVY 129 (149)
T ss_pred HHHHHHHH---H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66664444 1 1256666666677888887777766653
No 17
>PHA01750 hypothetical protein
Probab=26.57 E-value=1.5e+02 Score=22.14 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=8.0
Q ss_pred HHHHHHHHhhhhhh
Q 018333 295 LQKSVLDLGKRADN 308 (358)
Q Consensus 295 ~~~~veel~~~~e~ 308 (358)
+.+.|+++++++++
T Consensus 61 l~~qv~eik~k~dk 74 (75)
T PHA01750 61 LSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHhhcc
Confidence 44556666666543
No 18
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=25.87 E-value=1e+02 Score=24.60 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHhhhcccee
Q 018333 291 EEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFF 324 (358)
Q Consensus 291 ~~e~~~~~veel~~~~e~Le~gle~Le~~v~~lF 324 (358)
+.+.+...+.+++..+..++.-+..++.+++.+.
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999888888876653
No 19
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=24.37 E-value=81 Score=27.14 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=42.6
Q ss_pred HHHHhhhHHHHHHhccccchhhhhhhhhhhHHHH-HHHHhhhcc--chhHHHHHHHHHHHHhhhhhhhhhhhhhHhhhcc
Q 018333 245 ALQANVNAEVRNILSSGRATVLNELEAVDGSVKK-LYEVIQNEV--DTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVD 321 (358)
Q Consensus 245 ~lq~rv~~e~~~~~~~~~~~~l~El~~vdaav~~-L~~~i~~~~--~~~~~e~~~~~veel~~~~e~Le~gle~Le~~v~ 321 (358)
-+|.||++|+.+.. -.|...++.++.. +... +... .......+...|+.|...++... .++.+....
T Consensus 35 ~iq~Rva~eL~~L~-------~~~~~~~~~~l~~~~~~e-d~~~~~~~lSs~~v~~~i~~L~~kLe~~~-kl~~~~~~~- 104 (142)
T PF07956_consen 35 HIQERVAEELKRLE-------EEELKKFEEALEKSLLSE-DEKDQDPGLSSKSVNEEIEKLREKLEERK-KLRELKEEK- 104 (142)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhccc-ccccccccccHHHHHHHHHHHHHHHHHHH-HHHhccccc-
Confidence 34999999887642 2344555444432 1110 0000 00112234455555555555442 222222221
Q ss_pred ceeeEEeeccceeecccccCCC
Q 018333 322 GFFKIVLSGRDALLCNLRATGT 343 (358)
Q Consensus 322 ~lFr~li~~R~~LL~~l~~~~~ 343 (358)
-+..+-.+|..|..+|+..+.
T Consensus 105 -~~~~v~~aR~~vv~CL~~N~~ 125 (142)
T PF07956_consen 105 -NSEEVEKARSAVVRCLRENDG 125 (142)
T ss_pred -cchhhHHHHHHHHHHHHHCCC
Confidence 233456778888888876554
No 20
>PF15546 DUF4653: Domain of unknown function (DUF4653)
Probab=24.12 E-value=55 Score=29.83 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=35.6
Q ss_pred HHhhhhhhhhhhhhhHhhhccceeeEEeeccceeecccccCCCC
Q 018333 301 DLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTA 344 (358)
Q Consensus 301 el~~~~e~Le~gle~Le~~v~~lFr~li~~R~~LL~~l~~~~~~ 344 (358)
.|-+++..|...+.+-...+.+-|+.|+..|++|+..+.+....
T Consensus 190 ALl~Wir~LQ~~~~dQQ~RLQeSFDtILdnRKELiRclqq~~~p 233 (239)
T PF15546_consen 190 ALLRWIRGLQHQLVDQQNRLQESFDTILDNRKELIRCLQQRAAP 233 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcccCC
Confidence 45677777777778888888889999999999999998775443
No 21
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=23.96 E-value=3.2e+02 Score=21.43 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHhhhcc
Q 018333 294 LLQKSVLDLGKRADNLSQGLDHLTKAVD 321 (358)
Q Consensus 294 ~~~~~veel~~~~e~Le~gle~Le~~v~ 321 (358)
++...-.+|+..|+.++.-|++|++-|.
T Consensus 36 e~~~~~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 36 ELKWLKRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666665543
No 22
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.91 E-value=2.5e+02 Score=20.25 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=22.5
Q ss_pred hhhhhhhhHHHHHHHHhhhccchhHHHHHHHHHHHHhhhhhhhhhhhhhHhhhcc
Q 018333 267 NELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVD 321 (358)
Q Consensus 267 ~El~~vdaav~~L~~~i~~~~~~~~~e~~~~~veel~~~~e~Le~gle~Le~~v~ 321 (358)
+|+.+++..+..++.++ +++++.++.++..+..|-.--|-+..+++
T Consensus 7 n~~~~~~~~i~tvk~en---------~~i~~~ve~i~envk~ll~lYE~Vs~~iN 52 (55)
T PF05377_consen 7 NELPRIESSINTVKKEN---------EEISESVEKIEENVKDLLSLYEVVSNQIN 52 (55)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 45555555555554432 23444455555555554444444444443
No 23
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.45 E-value=1.9e+02 Score=32.36 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHhhhcc
Q 018333 293 ELLQKSVLDLGKRADNLSQGLDHLTKAVD 321 (358)
Q Consensus 293 e~~~~~veel~~~~e~Le~gle~Le~~v~ 321 (358)
++++..-+.|++.++.+|..|.+|.+|||
T Consensus 413 ~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 413 EELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777777777766
No 24
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=22.64 E-value=1.3e+02 Score=23.03 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=19.7
Q ss_pred HHHHhhhhhhhhhhhhhHhhhcccee
Q 018333 299 VLDLGKRADNLSQGLDHLTKAVDGFF 324 (358)
Q Consensus 299 veel~~~~e~Le~gle~Le~~v~~lF 324 (358)
|.++..+++++...++.|+.+|+..-
T Consensus 37 v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 37 VTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888776543
No 25
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=22.20 E-value=1.1e+02 Score=25.30 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhhhccceeeEEe
Q 018333 292 EELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVL 328 (358)
Q Consensus 292 ~e~~~~~veel~~~~e~Le~gle~Le~~v~~lFr~li 328 (358)
...+...++-+...-..|+..|+++|++++.++....
T Consensus 73 Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~l~~~~~ 109 (116)
T PF05064_consen 73 QKRLDQELDFIEAQQKELEELLDPLEKQVEKLLSNQS 109 (116)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHCCCCCTT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888888899999999999999999886543
No 26
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.53 E-value=1.8e+02 Score=25.25 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHhhh
Q 018333 294 LLQKSVLDLGKRADNLSQGLDHLTKA 319 (358)
Q Consensus 294 ~~~~~veel~~~~e~Le~gle~Le~~ 319 (358)
++...+++++..++.|+..|+.|..+
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46677778888888888887777654
No 27
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=21.43 E-value=1.9e+02 Score=25.95 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHhhhccceeeEEeeccceeecccccCCCCCCcc
Q 018333 291 EEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDIL 348 (358)
Q Consensus 291 ~~e~~~~~veel~~~~e~Le~gle~Le~~v~~lFr~li~~R~~LL~~l~~~~~~~~~~ 348 (358)
.++.-+..++||+..++.|+.-++.+.+.+++|-..+-+-|..+-.+--..++.++..
T Consensus 100 kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el~~~~q~~p~~~~sa 157 (181)
T KOG3335|consen 100 KEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESELKPIRQAPPNPGPSA 157 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccCCCCCCchh
Confidence 3445566788888888888888888888888887666666666555444444444333
No 28
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=20.41 E-value=1.4e+02 Score=30.69 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=40.9
Q ss_pred hhhhhhhhhhhHHHHHHHHhhhccch-hHHHHHHHHHHHHhhhhhhhhhhhhhHhhhccceee
Q 018333 264 TVLNELEAVDGSVKKLYEVIQNEVDT-VEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFK 325 (358)
Q Consensus 264 ~~l~El~~vdaav~~L~~~i~~~~~~-~~~e~~~~~veel~~~~e~Le~gle~Le~~v~~lFr 325 (358)
..+++|++|+-.-++|.+....-.+- --...+.+.++++...-++||..|+-||.+++.+-.
T Consensus 400 ~AI~~fR~Vk~~qRkl~e~~nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~ 462 (489)
T KOG3684|consen 400 QAIHQFRSVKWEQRKLSEQANSLVDLAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEALTA 462 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999888888763321110 112345667777777777777777777777776543
No 29
>PLN02320 seryl-tRNA synthetase
Probab=20.16 E-value=1.1e+02 Score=31.83 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhhhcccee
Q 018333 292 EELLQKSVLDLGKRADNLSQGLDHLTKAVDGFF 324 (358)
Q Consensus 292 ~e~~~~~veel~~~~e~Le~gle~Le~~v~~lF 324 (358)
.+.+.+.+.+|+..+..|+..+..++.+++.+.
T Consensus 132 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667778888888888888888877765543
Done!