Query 018333
Match_columns 358
No_of_seqs 136 out of 304
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 13:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ljm_A Coil Ser L9C; de novo d 55.5 5.6 0.00019 23.4 1.5 15 304-318 8-22 (31)
2 2akf_A Coronin-1A; coiled coil 54.2 16 0.00056 21.8 3.4 20 295-314 11-30 (32)
3 2pnv_A Small conductance calci 44.2 15 0.0005 24.2 2.4 20 300-319 19-38 (43)
4 1iq5_B Ca2+/calmodulin depende 38.1 9.7 0.00033 22.5 0.7 7 20-26 21-27 (27)
5 2yy0_A C-MYC-binding protein; 38.0 38 0.0013 23.1 3.9 32 290-321 19-50 (53)
6 1ckk_B Camkk, protein (RAT Ca2 35.6 11 0.00039 22.0 0.7 6 20-25 21-26 (26)
7 1wt6_A Myotonin-protein kinase 32.8 1.1E+02 0.0038 22.7 5.9 37 242-283 11-47 (81)
8 2pnv_A Small conductance calci 32.1 56 0.0019 21.3 3.7 21 294-314 20-40 (43)
9 3azd_A Short alpha-tropomyosin 30.0 48 0.0016 20.8 3.1 29 292-320 6-34 (37)
10 1aq5_A Matrilin-1, CMP, cartil 27.7 66 0.0023 21.4 3.5 24 297-320 23-46 (47)
11 3na7_A HP0958; flagellar bioge 24.5 81 0.0028 28.2 4.9 10 268-277 12-21 (256)
12 3nmd_A CGMP dependent protein 24.5 1.1E+02 0.0036 22.3 4.4 24 299-322 42-65 (72)
13 1wyy_A E2 glycoprotein; membra 23.3 1.2E+02 0.0042 24.9 5.1 63 269-336 38-105 (149)
14 1g6u_A Domain swapped dimer; d 22.1 1.6E+02 0.0055 18.8 5.4 31 286-316 16-46 (48)
15 3ci9_A Heat shock factor-bindi 21.5 1.5E+02 0.0053 19.7 4.5 19 301-319 28-46 (48)
16 1kd8_B GABH BLL, GCN4 acid bas 21.3 35 0.0012 21.3 1.1 19 297-315 8-26 (36)
No 1
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=55.48 E-value=5.6 Score=23.36 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=5.8
Q ss_pred hhhhhhhhhhhhHhh
Q 018333 304 KRADNLSQGLDHLTK 318 (358)
Q Consensus 304 ~~~e~Le~gle~Le~ 318 (358)
++|.+|+..++.||+
T Consensus 8 kkcaalesklqalek 22 (31)
T 3ljm_A 8 KKCAALESKLQALEK 22 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 2
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=54.19 E-value=16 Score=21.77 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhhhhhhhhhh
Q 018333 295 LQKSVLDLGKRADNLSQGLD 314 (358)
Q Consensus 295 ~~~~veel~~~~e~Le~gle 314 (358)
+...|++|+++++.||+.++
T Consensus 11 l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 11 LNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666543
No 3
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=44.23 E-value=15 Score=24.18 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=8.5
Q ss_pred HHHhhhhhhhhhhhhhHhhh
Q 018333 300 LDLGKRADNLSQGLDHLTKA 319 (358)
Q Consensus 300 eel~~~~e~Le~gle~Le~~ 319 (358)
++|.+++..||..+|.|.++
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 4
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=38.06 E-value=9.7 Score=22.46 Aligned_cols=7 Identities=86% Similarity=1.701 Sum_probs=5.9
Q ss_pred CCCCccc
Q 018333 20 PFGNPFR 26 (358)
Q Consensus 20 ~~~~~~~ 26 (358)
||||||.
T Consensus 21 sf~nPf~ 27 (27)
T 1iq5_B 21 RFGNPFR 27 (27)
T ss_dssp SSSCSCC
T ss_pred cccCCCC
Confidence 7899984
No 5
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.97 E-value=38 Score=23.06 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhHhhhcc
Q 018333 290 VEEELLQKSVLDLGKRADNLSQGLDHLTKAVD 321 (358)
Q Consensus 290 ~~~e~~~~~veel~~~~e~Le~gle~Le~~v~ 321 (358)
.+.+.++...++|+.+++.|...++.+..+++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777888888888887777777654
No 6
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=35.65 E-value=11 Score=21.97 Aligned_cols=6 Identities=83% Similarity=1.796 Sum_probs=5.2
Q ss_pred CCCCcc
Q 018333 20 PFGNPF 25 (358)
Q Consensus 20 ~~~~~~ 25 (358)
||||||
T Consensus 21 sf~nPf 26 (26)
T 1ckk_B 21 SFGNPF 26 (26)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 789997
No 7
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.77 E-value=1.1e+02 Score=22.67 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=25.2
Q ss_pred hhHHHHHhhhHHHHHHhccccchhhhhhhhhhhHHHHHHHHh
Q 018333 242 AFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVI 283 (358)
Q Consensus 242 ~~~~lq~rv~~e~~~~~~~~~~~~l~El~~vdaav~~L~~~i 283 (358)
....||...-.||+.+- ..-.|+.+|.++...+...+
T Consensus 11 ~~leLQSALeaEIqAKQ-----~i~EELs~vr~~ni~~eskL 47 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQ-----SLSREMEAIRTDNQNFASQL 47 (81)
T ss_dssp CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 34577888888887643 34578888888766665543
No 8
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=32.07 E-value=56 Score=21.33 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhh
Q 018333 294 LLQKSVLDLGKRADNLSQGLD 314 (358)
Q Consensus 294 ~~~~~veel~~~~e~Le~gle 314 (358)
.+.+++..|..+++.|..+++
T Consensus 20 ~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 20 DFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554
No 9
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=30.00 E-value=48 Score=20.82 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhhhc
Q 018333 292 EELLQKSVLDLGKRADNLSQGLDHLTKAV 320 (358)
Q Consensus 292 ~e~~~~~veel~~~~e~Le~gle~Le~~v 320 (358)
.+.|+..|+.|+..++.+++.+..+.+.+
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777777777776665
No 10
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=27.68 E-value=66 Score=21.43 Aligned_cols=24 Identities=8% Similarity=0.322 Sum_probs=16.2
Q ss_pred HHHHHHhhhhhhhhhhhhhHhhhc
Q 018333 297 KSVLDLGKRADNLSQGLDHLTKAV 320 (358)
Q Consensus 297 ~~veel~~~~e~Le~gle~Le~~v 320 (358)
..++.|..+++.+...++.||.++
T Consensus 23 ~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 446677777777777777777653
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.54 E-value=81 Score=28.19 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=3.7
Q ss_pred hhhhhhhHHH
Q 018333 268 ELEAVDGSVK 277 (358)
Q Consensus 268 El~~vdaav~ 277 (358)
+++.+|..+.
T Consensus 12 ~LQ~lD~~i~ 21 (256)
T 3na7_A 12 EISHLDKEID 21 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.45 E-value=1.1e+02 Score=22.32 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=11.7
Q ss_pred HHHHhhhhhhhhhhhhhHhhhccc
Q 018333 299 VLDLGKRADNLSQGLDHLTKAVDG 322 (358)
Q Consensus 299 veel~~~~e~Le~gle~Le~~v~~ 322 (358)
++++.+.+...+.-|..|-.++|.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555544444443
No 13
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=23.27 E-value=1.2e+02 Score=24.94 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=31.9
Q ss_pred hhhhhhHHHHHHHHhhhccchhHHHHHHHHHHHHhhhhhhhhhhhhhHhhhccce-----eeEEeeccceeec
Q 018333 269 LEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGF-----FKIVLSGRDALLC 336 (358)
Q Consensus 269 l~~vdaav~~L~~~i~~~~~~~~~e~~~~~veel~~~~e~Le~gle~Le~~v~~l-----Fr~li~~R~~LL~ 336 (358)
|..+..|+.++...+ ..+...+...+..|...+++....|+++-..+|.+ -+++|.||.+-+|
T Consensus 38 ~~tts~AL~kiQ~VV-----N~q~~aL~~l~~qL~~nFgAISssi~dIy~rLd~leAdaQVDRLItGRl~s~n 105 (149)
T 1wyy_A 38 LTTTSTALGKLQDVV-----NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGGRGGSD 105 (149)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 444444555444332 23444567778888888888888888877776665 5889999987666
No 14
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=22.12 E-value=1.6e+02 Score=18.76 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=19.8
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 018333 286 EVDTVEEELLQKSVLDLGKRADNLSQGLDHL 316 (358)
Q Consensus 286 ~~~~~~~e~~~~~veel~~~~e~Le~gle~L 316 (358)
+-.+++-..+....+.+.+++.+|...++.|
T Consensus 16 gfspeelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555556666777777777777766654
No 15
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=21.47 E-value=1.5e+02 Score=19.66 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=8.2
Q ss_pred HHhhhhhhhhhhhhhHhhh
Q 018333 301 DLGKRADNLSQGLDHLTKA 319 (358)
Q Consensus 301 el~~~~e~Le~gle~Le~~ 319 (358)
++-.+++.+...||+||+.
T Consensus 28 ~I~~riDdM~~RIDdLE~s 46 (48)
T 3ci9_A 28 QIIGRIDDMSSRIDDLEKN 46 (48)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhHHHHHHhh
Confidence 3444444445555555543
No 16
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=21.30 E-value=35 Score=21.33 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=8.2
Q ss_pred HHHHHHhhhhhhhhhhhhh
Q 018333 297 KSVLDLGKRADNLSQGLDH 315 (358)
Q Consensus 297 ~~veel~~~~e~Le~gle~ 315 (358)
+.|++|..+-..|+.-+..
T Consensus 8 ~KVEeLl~~~~~Le~eV~R 26 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVAR 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 4444444444444444333
Done!