Query 018333
Match_columns 358
No_of_seqs 136 out of 304
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 13:38:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018333.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018333hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 35.3 32 0.0023 24.7 5.6 56 267-323 42-97 (110)
2 d1lvfa_ a.47.2.1 (A:) Syntaxin 18.8 77 0.0056 22.5 4.9 27 295-321 40-66 (106)
3 d1u5ta1 a.4.5.54 (A:20-164) Va 16.1 26 0.0019 27.2 1.5 29 105-137 71-99 (145)
4 d1ez3a_ a.47.2.1 (A:) Syntaxin 15.6 1.4E+02 0.0099 21.3 5.8 27 294-320 49-75 (124)
5 d1zl8a1 a.194.1.1 (A:4-53) Lin 13.5 25 0.0018 22.0 0.6 12 116-127 37-48 (50)
6 d1y74a1 a.194.1.1 (A:17-73) Li 11.5 37 0.0027 21.7 1.0 13 116-128 38-50 (57)
7 d1wa8b1 a.25.3.1 (B:602-695) E 9.8 86 0.0062 21.4 2.7 11 269-279 7-17 (94)
8 d1wr6a1 a.7.8.1 (A:211-300) AD 9.7 2E+02 0.015 19.5 4.8 54 266-319 5-58 (90)
9 d1ozja_ d.164.1.1 (A:) SMAD MH 8.3 1.3E+02 0.0098 22.2 3.4 17 291-307 21-37 (126)
10 d1wu9a1 a.245.1.1 (A:191-249) 8.3 37 0.0027 22.1 0.0 29 299-327 3-31 (59)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=35.34 E-value=32 Score=24.73 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=35.3
Q ss_pred hhhhhhhhHHHHHHHHhhhccchhHHHHHHHHHHHHhhhhhhhhhhhhhHhhhccce
Q 018333 267 NELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGF 323 (358)
Q Consensus 267 ~El~~vdaav~~L~~~i~~~~~~~~~e~~~~~veel~~~~e~Le~gle~Le~~v~~l 323 (358)
.+++.+.+--..+...|... ..++.+.+...+..|+..+..++..+..++.+++.+
T Consensus 42 ~~~e~l~~~rN~~sk~i~k~-~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 42 KRLQEVQTERNQVAKRVPKA-PPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333222 234445677888888888888888888888886654
No 2
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.79 E-value=77 Score=22.55 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=18.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHhhhcc
Q 018333 295 LQKSVLDLGKRADNLSQGLDHLTKAVD 321 (358)
Q Consensus 295 ~~~~veel~~~~e~Le~gle~Le~~v~ 321 (358)
+...-.+|+..|+.++.-|++|++-|.
T Consensus 40 ~~~~~~eL~~~l~siewdL~dLe~av~ 66 (106)
T d1lvfa_ 40 IDWTTNELRNNLRSIEWDLEDLDETIS 66 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445666777777777777777777655
No 3
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.10 E-value=26 Score=27.16 Aligned_cols=29 Identities=21% Similarity=0.555 Sum_probs=21.6
Q ss_pred eeeeecchhhhHHHHHhhhhhhhcccccchhhh
Q 018333 105 DVYLDISVNLLDICIAFSSVLTKVSQGHLLLQC 137 (358)
Q Consensus 105 deyLd~SlkLLDvCna~k~~l~~~~~~~~~lq~ 137 (358)
|=|.+=++++.|+|-++++ .+.+...+.-
T Consensus 71 DFYyEL~VqIvEvC~~tr~----~NGGli~l~e 99 (145)
T d1u5ta1 71 DFYYEVCLKVIEICRQTKD----MNGGVISFQE 99 (145)
T ss_dssp HHHHHHHHHHHHHHHHHTT----TSSSCEEHHH
T ss_pred chHHHHHHHHHHHHHHhhh----cCCCEeEHHH
Confidence 6689999999999999986 3444444443
No 4
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.62 E-value=1.4e+02 Score=21.33 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHhhhc
Q 018333 294 LLQKSVLDLGKRADNLSQGLDHLTKAV 320 (358)
Q Consensus 294 ~~~~~veel~~~~e~Le~gle~Le~~v 320 (358)
.+...+.++++....+...|+.|+..+
T Consensus 49 ~l~~~~~~i~~~a~~ik~~Lk~l~~~~ 75 (124)
T d1ez3a_ 49 ELEELMSDIKKTANKVRSKLKSIEQSI 75 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555443
No 5
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=13.52 E-value=25 Score=21.96 Aligned_cols=12 Identities=17% Similarity=0.122 Sum_probs=8.7
Q ss_pred HHHHHhhhhhhh
Q 018333 116 DICIAFSSVLTK 127 (358)
Q Consensus 116 DvCna~k~~l~~ 127 (358)
|+|+++|+.-.+
T Consensus 37 dF~~avREVYe~ 48 (50)
T d1zl8a1 37 EFFGAVREVYET 48 (50)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 788888876544
No 6
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.54 E-value=37 Score=21.71 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=10.3
Q ss_pred HHHHHhhhhhhhc
Q 018333 116 DICIAFSSVLTKV 128 (358)
Q Consensus 116 DvCna~k~~l~~~ 128 (358)
|+|+++|+.-.++
T Consensus 38 dF~~avREVYehv 50 (57)
T d1y74a1 38 RFCSAIREVYEQL 50 (57)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999998876655
No 7
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.85 E-value=86 Score=21.36 Aligned_cols=11 Identities=0% Similarity=0.380 Sum_probs=4.5
Q ss_pred hhhhhhHHHHH
Q 018333 269 LEAVDGSVKKL 279 (358)
Q Consensus 269 l~~vdaav~~L 279 (358)
|..++.+...+
T Consensus 7 ~~~l~~~a~~i 17 (94)
T d1wa8b1 7 FAGIEAAASAI 17 (94)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 8
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.70 E-value=2e+02 Score=19.52 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=31.9
Q ss_pred hhhhhhhhhHHHHHHHHhhhccchhHHHHHHHHHHHHhhhhhhhhhhhhhHhhh
Q 018333 266 LNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKA 319 (358)
Q Consensus 266 l~El~~vdaav~~L~~~i~~~~~~~~~e~~~~~veel~~~~e~Le~gle~Le~~ 319 (358)
++|++.|...++-|..-+..-...+....-.+.+++|-..|..+...|..+-..
T Consensus 5 ~s~le~v~~n~~lL~eML~~~~p~~~~~~~~eli~eL~~~C~~~qp~i~~li~~ 58 (90)
T d1wr6a1 5 LHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASE 58 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467787877777666555431100111111356778888888888877777543
No 9
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.31 E-value=1.3e+02 Score=22.23 Aligned_cols=17 Identities=35% Similarity=0.392 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhhhh
Q 018333 291 EEELLQKSVLDLGKRAD 307 (358)
Q Consensus 291 ~~e~~~~~veel~~~~e 307 (358)
+++..+.+++.|-+++.
T Consensus 21 ee~~~~kAi~sLvKkLK 37 (126)
T d1ozja_ 21 EEKWCEKAVKSLVKKLK 37 (126)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 33344455555554443
No 10
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.30 E-value=37 Score=22.08 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=19.1
Q ss_pred HHHHhhhhhhhhhhhhhHhhhccceeeEE
Q 018333 299 VLDLGKRADNLSQGLDHLTKAVDGFFKIV 327 (358)
Q Consensus 299 veel~~~~e~Le~gle~Le~~v~~lFr~l 327 (358)
+.+|...+..|...++.+|++=|..|..|
T Consensus 3 ~~~L~~ei~elk~~v~~lEkERdFYF~KL 31 (59)
T d1wu9a1 3 AAELMQQVNVLKLTVEDLEKERDFYFGKL 31 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666777777777766666554
Done!