BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018334
         (358 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
           From Clostridium Difficile
 pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
           From Clostridium Difficile
          Length = 119

 Score = 30.4 bits (67), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 15/98 (15%)

Query: 121 ELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFVVPCGSNRLYPDARSFEM 180
           + +FC    + AN E+  +    +D +L   + NP+   H+ VVP        D    EM
Sbjct: 5   DCIFC----KIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEM 60

Query: 181 ---------IVRIAFE--INNYSFRLFYDCSSPGASHV 207
                    I +IA E   +   FR+  +C S G   V
Sbjct: 61  DIVSHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEV 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,250,205
Number of Sequences: 62578
Number of extensions: 401250
Number of successful extensions: 680
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 2
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)