Query 018335
Match_columns 358
No_of_seqs 126 out of 148
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 08:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07887 Calmodulin_bind: Calm 100.0 1E-116 3E-121 847.8 26.9 270 86-358 1-272 (299)
2 TIGR02239 recomb_RAD51 DNA rep 90.1 0.36 7.9E-06 47.7 4.3 48 264-316 13-60 (316)
3 TIGR02238 recomb_DMC1 meiotic 88.3 0.6 1.3E-05 46.2 4.3 49 263-316 12-60 (313)
4 PLN03186 DNA repair protein RA 88.2 0.61 1.3E-05 46.9 4.3 60 252-316 28-87 (342)
5 PRK04301 radA DNA repair and r 85.4 0.65 1.4E-05 45.3 2.8 56 252-314 8-63 (317)
6 PF14520 HHH_5: Helix-hairpin- 83.9 0.49 1.1E-05 35.5 1.0 50 255-311 10-59 (60)
7 PLN03187 meiotic recombination 83.6 1 2.3E-05 45.3 3.4 60 251-315 30-89 (344)
8 PRK03609 umuC DNA polymerase V 80.8 1.2 2.6E-05 45.3 2.6 51 251-311 180-230 (422)
9 PTZ00035 Rad51 protein; Provis 78.3 2.7 5.9E-05 42.0 4.3 60 251-315 22-81 (337)
10 PF14229 DUF4332: Domain of un 75.4 3.4 7.5E-05 35.6 3.6 49 264-314 7-57 (122)
11 TIGR02236 recomb_radA DNA repa 74.9 2.5 5.4E-05 40.8 2.9 50 255-311 4-53 (310)
12 PRK02406 DNA polymerase IV; Va 74.8 2.9 6.2E-05 41.1 3.3 52 251-312 169-220 (343)
13 PRK03352 DNA polymerase IV; Va 69.9 2.1 4.5E-05 42.1 1.1 41 251-296 178-218 (346)
14 PRK03858 DNA polymerase IV; Va 68.9 2.6 5.6E-05 42.2 1.5 48 251-303 174-221 (396)
15 PRK02794 DNA polymerase IV; Pr 66.9 4.3 9.2E-05 41.2 2.6 55 251-315 210-264 (419)
16 PRK14133 DNA polymerase IV; Pr 65.1 6.1 0.00013 38.9 3.2 51 251-311 174-224 (347)
17 PRK03348 DNA polymerase IV; Pr 64.7 4 8.6E-05 42.3 1.9 48 251-303 181-228 (454)
18 cd01700 PolY_Pol_V_umuC umuC s 64.4 5.2 0.00011 39.3 2.6 51 251-311 177-227 (344)
19 PRK01810 DNA polymerase IV; Va 62.9 6.1 0.00013 39.8 2.8 51 251-311 180-230 (407)
20 cd03586 PolY_Pol_IV_kappa DNA 61.7 6.6 0.00014 37.9 2.8 52 251-312 172-223 (334)
21 PRK03103 DNA polymerase IV; Re 61.3 6.6 0.00014 39.6 2.7 52 251-312 182-233 (409)
22 PRK01172 ski2-like helicase; P 61.1 8.7 0.00019 41.3 3.8 51 255-312 617-667 (674)
23 PRK01216 DNA polymerase IV; Va 58.4 10 0.00023 38.0 3.6 51 251-310 179-229 (351)
24 PF10691 DUF2497: Protein of u 56.9 29 0.00063 28.0 5.2 41 24-64 33-73 (73)
25 cd01701 PolY_Rev1 DNA polymera 56.5 9.8 0.00021 38.6 3.1 54 251-311 223-276 (404)
26 COG3743 Uncharacterized conser 54.4 15 0.00032 33.0 3.4 60 249-312 66-126 (133)
27 cd00424 PolY Y-family of DNA p 54.3 9.1 0.0002 37.6 2.4 55 251-315 174-229 (343)
28 PF03118 RNA_pol_A_CTD: Bacter 49.9 11 0.00024 29.3 1.8 37 265-306 24-60 (66)
29 PF04994 TfoX_C: TfoX C-termin 49.1 6 0.00013 32.1 0.1 30 253-284 6-35 (81)
30 cd01703 PolY_Pol_iota DNA Poly 48.0 10 0.00022 38.5 1.7 58 251-314 173-242 (379)
31 cd01702 PolY_Pol_eta DNA Polym 47.4 8.9 0.00019 38.6 1.1 55 251-312 183-238 (359)
32 PF02889 Sec63: Sec63 Brl doma 46.8 17 0.00037 34.8 2.9 54 251-311 149-202 (314)
33 PF14229 DUF4332: Domain of un 45.5 12 0.00026 32.2 1.5 38 252-294 55-92 (122)
34 cd07978 TAF13 The TATA Binding 43.9 36 0.00078 28.3 4.0 35 270-312 52-89 (92)
35 KOG1520 Predicted alkaloid syn 39.6 1.1E+02 0.0024 31.8 7.5 45 164-214 152-196 (376)
36 PF11754 Velvet: Velvet factor 38.0 3.4E+02 0.0074 25.3 10.2 62 171-235 97-172 (203)
37 KOG4233 DNA-bridging protein B 36.7 38 0.00082 28.3 3.0 56 246-313 15-78 (90)
38 cd03468 PolY_like DNA Polymera 36.3 32 0.00069 33.2 3.0 35 257-296 177-211 (335)
39 TIGR02979 phageshock_pspD phag 36.2 45 0.00097 26.2 3.1 14 42-55 40-53 (59)
40 PF09584 Phageshock_PspD: Phag 34.7 46 0.001 26.6 3.1 15 42-56 45-59 (66)
41 PRK10917 ATP-dependent DNA hel 32.5 19 0.00042 39.2 0.8 39 246-286 5-43 (681)
42 TIGR01954 nusA_Cterm_rpt trans 32.4 67 0.0014 22.5 3.4 42 265-311 6-47 (50)
43 COG4766 EutQ Ethanolamine util 31.7 1.7E+02 0.0037 27.3 6.6 92 29-120 13-107 (176)
44 PF06594 HCBP_related: Haemoly 30.5 31 0.00068 24.3 1.4 18 186-203 24-41 (43)
45 PRK10497 peripheral inner memb 30.1 63 0.0014 26.3 3.2 15 42-56 52-66 (73)
46 PRK15457 ethanolamine utilizat 28.3 98 0.0021 30.2 4.7 17 45-61 89-105 (233)
47 PRK07758 hypothetical protein; 27.2 98 0.0021 26.4 4.0 37 266-307 48-84 (95)
48 PRK05256 condesin subunit E; P 26.8 86 0.0019 30.7 4.0 49 266-314 107-159 (238)
49 PRK14973 DNA topoisomerase I; 26.0 55 0.0012 37.6 3.0 54 252-312 879-932 (936)
50 PF09816 EAF: RNA polymerase I 25.4 2.5E+02 0.0054 23.6 6.2 67 69-138 31-103 (109)
51 KOG1104 Nuclear cap-binding co 24.6 82 0.0018 35.5 3.9 41 275-315 224-268 (759)
52 PF00853 Runt: Runt domain; I 23.0 1.8E+02 0.0039 26.2 5.0 34 179-214 74-107 (135)
53 PTZ00205 DNA polymerase kappa; 22.9 73 0.0016 34.8 3.1 53 251-305 310-367 (571)
54 smart00611 SEC63 Domain of unk 21.5 1.2E+02 0.0025 29.1 3.9 53 251-310 152-204 (312)
55 PF13854 Kelch_5: Kelch motif 20.8 59 0.0013 22.5 1.3 27 311-337 9-37 (42)
56 PF12645 HTH_16: Helix-turn-he 20.7 1.2E+02 0.0027 23.5 3.2 26 28-53 2-29 (65)
57 PF10657 RC-P840_PscD: Photosy 20.5 97 0.0021 27.9 2.8 28 325-352 115-142 (144)
No 1
>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses []. However, their precise function in this regard is as yet unknown.
Probab=100.00 E-value=1.3e-116 Score=847.78 Aligned_cols=270 Identities=58% Similarity=0.976 Sum_probs=265.8
Q ss_pred ceEEEEccCCCCCcccCCceeecCCCCeEEEEEEcCCCCeeecCCCCCcceEEEEEecCCCCCCCCCCCCHHHHhhcccc
Q 018335 86 SLKLIFSQKLSLPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIELVVLDGDFPPGDRDHWTPEEFESNIVK 165 (358)
Q Consensus 86 ~~~L~F~n~l~~pifT~~kI~a~~g~~i~V~l~D~~t~n~iv~~g~~ss~kveIvVLdGDF~~~~~e~WT~eEF~~~IV~ 165 (358)
+|||+|+|+|++|+|||++|+|+||+||+|+|+|++|+ |++||+||+|||||||||||+++++++||+|||++|||+
T Consensus 1 ~~~L~F~n~l~~pifT~~~i~a~~g~~i~V~l~d~~~~---v~~g~lss~kieIvvLdGdF~~~~~~~wT~eeF~~~iv~ 77 (299)
T PF07887_consen 1 NLQLRFLNKLSLPIFTGSKIEAEDGAPIKVALVDANTG---VTSGPLSSAKIEIVVLDGDFNDEDCEDWTEEEFNSHIVK 77 (299)
T ss_pred CeEEEecCCCCCCcccCCceEecCCCcEEEEEEECCCC---ccCCCCCCcEEEEEEEccccCCCccCCCCHHHHhhcEee
Confidence 58999999999999999999999999999999998876 999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccEEEEecCceeecCCeEEecCCccccCCceEEEEEeecCCCCceeeeeeeecceEEeecCCcccccCCC
Q 018335 166 ERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVARGSYQGVRICEAITDAFVVKDHRGELYKKHHP 245 (358)
Q Consensus 166 ~R~Gk~pLL~Gdl~v~L~~Gva~l~di~FtDnSs~~rSrKFRLgarv~~~~~~g~RI~EAvse~FvVkd~Rge~~kKh~p 245 (358)
+|+||+|||+|+++|+|+||+|+|+||+|||||||+|||||||||||+++++.|+|||||+||||+|||||||+||||||
T Consensus 78 ~r~gk~pLL~G~~~v~L~~G~a~l~di~FtdnSs~~rsrKFRLgarv~~~~~~~~rI~Eavse~FvVkd~Rge~~kKh~p 157 (299)
T PF07887_consen 78 EREGKRPLLTGDLQVTLKNGVATLGDISFTDNSSWIRSRKFRLGARVVSGSCDGVRIREAVSEPFVVKDHRGELYKKHYP 157 (299)
T ss_pred cCCCCCCCCCccEEEEecCCEEEccccEEecCcccccCCcEEEEEEEccCCCCCceeEEeeecCEEEEecccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccCCCceEEEe--
Q 018335 246 PMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFR-- 323 (358)
Q Consensus 246 P~L~DeVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl~~k~y~y~-- 323 (358)
|+|+|||||||+|||+|+|||+|+++||+||+|||+++++||++||+|||+|||++||++||+|||||++++++|+|+
T Consensus 158 P~L~DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFl~l~~~d~~~Lr~ilg~~ms~k~We~~v~HA~tCvl~~~~y~y~~~ 237 (299)
T PF07887_consen 158 PSLDDEVWRLEKIGKDGAFHKRLKKNGINTVEDFLKLLNKDPQKLREILGSGMSNKMWETTVEHAKTCVLGDKLYVYYDE 237 (299)
T ss_pred CCCCCchhhhhhccccCHHHHHHHHcCCccHHHHHHHHhcCHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCcEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEccceeEeeeEECCeEeecccCccccCC
Q 018335 324 GHNCIILLNPICQVVRAVINNQTYLTRDLTKLNRV 358 (358)
Q Consensus 324 ~~~~~l~FN~i~~lvga~~~g~~~~~~~l~~~~k~ 358 (358)
++|++|+|||||+||||+|+|||++.++|++.||+
T Consensus 238 ~~nv~l~FN~i~~lvga~~~g~y~s~d~L~~~qK~ 272 (299)
T PF07887_consen 238 EQNVGLFFNCIYELVGAIFGGQYVSLDNLSSAQKA 272 (299)
T ss_pred CCceEEEEcchhhEEeEEECCEEEehHHcCHHHHH
Confidence 67999999999999999999999999999999984
No 2
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=90.13 E-value=0.36 Score=47.66 Aligned_cols=48 Identities=31% Similarity=0.284 Sum_probs=42.8
Q ss_pred hhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccCC
Q 018335 264 FHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG 316 (358)
Q Consensus 264 ~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl~ 316 (358)
.-++|+++||.||+||+.. +|..|.+++ ++|...++.+..||.+|...
T Consensus 13 ~~~~l~~~g~~t~~~~~~~---~~~~L~~i~--~ls~~~~~~~~~~~~~~~~~ 60 (316)
T TIGR02239 13 DIKKLQEAGLHTVESVAYA---PKKQLLEIK--GISEAKADKILAEAAKLVPM 60 (316)
T ss_pred HHHHHHHcCCCcHHHHHhC---CHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence 3489999999999999875 899999998 79999999999999988653
No 3
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=88.28 E-value=0.6 Score=46.19 Aligned_cols=49 Identities=35% Similarity=0.311 Sum_probs=43.0
Q ss_pred hhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccCC
Q 018335 263 AFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG 316 (358)
Q Consensus 263 ~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl~ 316 (358)
..-++|+++||.||+||+.. ++..|.++. |+|...++.+++.|+.+...
T Consensus 12 ~~~~~L~~~g~~t~~~~~~~---~~~~L~~~~--gls~~~~~~i~~~~~~~~~~ 60 (313)
T TIGR02238 12 ADIKKLKSAGICTVNGVIMT---TRRALCKIK--GLSEAKVDKIKEAASKIINP 60 (313)
T ss_pred HHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHhhhcc
Confidence 34589999999999998765 799999998 79999999999999988654
No 4
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=88.16 E-value=0.61 Score=46.88 Aligned_cols=60 Identities=32% Similarity=0.287 Sum_probs=47.1
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccCC
Q 018335 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG 316 (358)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl~ 316 (358)
+-.|..-|-.-.--++|+++||.||+||+.. ++..|.+++ ++|....+.+.+||.+|...
T Consensus 28 ~~~l~~~gi~~~~i~kL~~~g~~T~~~~~~~---~~~~L~~i~--~is~~~~~~~~~~~~~~~~~ 87 (342)
T PLN03186 28 IEQLQASGIAALDIKKLKDAGIHTVESLAYA---PKKDLLQIK--GISEAKVEKILEAASKLVPL 87 (342)
T ss_pred HHHHHhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHHhccc
Confidence 4444442333334499999999999999875 788999998 79999999999999888654
No 5
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=85.35 E-value=0.65 Score=45.27 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=44.8
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcccc
Q 018335 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV 314 (358)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCv 314 (358)
+-.|.+||+. .-++|.++||+|++|++. .+++.|.+++ |++.+.++.+.+-|+.+.
T Consensus 8 l~~l~gIg~~--~a~~L~~~Gi~t~~dl~~---~~~~~L~~~~--g~~~~~a~~l~~~a~~~~ 63 (317)
T PRK04301 8 LEDLPGVGPA--TAEKLREAGYDTVEAIAV---ASPKELSEAA--GIGESTAAKIIEAAREAA 63 (317)
T ss_pred HhhcCCCCHH--HHHHHHHcCCCCHHHHHc---CCHHHHHHhc--CCCHHHHHHHHHHHHHhh
Confidence 4455566654 459999999999999965 4899999999 688889999998887644
No 6
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=83.91 E-value=0.49 Score=35.45 Aligned_cols=50 Identities=38% Similarity=0.576 Sum_probs=40.3
Q ss_pred eeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 255 LEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 255 Le~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
+.+||+.- .++|.++||.|++|+..+ +++.|.++= |++.+.=+.+++.|+
T Consensus 10 I~Gig~~~--a~~L~~~G~~t~~~l~~a---~~~~L~~i~--Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 10 IPGIGPKR--AEKLYEAGIKTLEDLANA---DPEELAEIP--GIGEKTAEKIIEAAR 59 (60)
T ss_dssp STTCHHHH--HHHHHHTTCSSHHHHHTS---HHHHHHTST--TSSHHHHHHHHHHHH
T ss_pred CCCCCHHH--HHHHHhcCCCcHHHHHcC---CHHHHhcCC--CCCHHHHHHHHHHHh
Confidence 44555553 388999999999998764 888999985 689999999998886
No 7
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=83.62 E-value=1 Score=45.34 Aligned_cols=60 Identities=27% Similarity=0.271 Sum_probs=47.5
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccC
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl 315 (358)
++..|+.-|-.-..-++|.++||+||+|++.. ++..|-++. |+|...++.+++.|+..+.
T Consensus 30 ~~~~l~~~g~~~~~~~kL~~~g~~tv~~~~~~---~~~~L~~~~--g~s~~~~~ki~~~a~~~~~ 89 (344)
T PLN03187 30 SIDKLISQGINAGDVKKLQDAGIYTCNGLMMH---TKKNLTGIK--GLSEAKVDKICEAAEKLLN 89 (344)
T ss_pred CHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHHhhc
Confidence 35566553433445699999999999998865 788899987 7999999999999987654
No 8
>PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed
Probab=80.77 E-value=1.2 Score=45.26 Aligned_cols=51 Identities=31% Similarity=0.384 Sum_probs=41.4
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
+|..|-+||+. .-++|...||+|++|+.++ ++..|++.||. .+..+..||.
T Consensus 180 Pv~~l~GiG~~--~~~~L~~lGi~TigdL~~~---~~~~L~~~fG~-----~~~~l~~~a~ 230 (422)
T PRK03609 180 PVEEVWGVGRR--ISKKLNAMGIKTALDLADT---NIRFIRKHFNV-----VLERTVRELR 230 (422)
T ss_pred ChhhcCCccHH--HHHHHHHcCCCcHHHHhcC---CHHHHHHHHCH-----HHHHHHHHhC
Confidence 46667778885 4499999999999999986 78899999973 5777777775
No 9
>PTZ00035 Rad51 protein; Provisional
Probab=78.32 E-value=2.7 Score=41.97 Aligned_cols=60 Identities=35% Similarity=0.327 Sum_probs=46.4
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccC
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl 315 (358)
++..|..-|-.-.--++|+++||+||+||+.. ++..|.++. |+|...=+.+++.|+.++.
T Consensus 22 ~~~~l~~~g~~~~~~~kL~~~g~~t~~~~~~~---~~~~L~~~~--gis~~~~~~i~~~~~~~~~ 81 (337)
T PTZ00035 22 EIEKLQSAGINAADIKKLKEAGICTVESVAYA---TKKDLCNIK--GISEAKVEKIKEAASKLVP 81 (337)
T ss_pred cHHHHhcCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CCCHHHHHHHHHHHHHhcc
Confidence 35556543333334599999999999998764 788999998 7999999999999987764
No 10
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=75.40 E-value=3.4 Score=35.57 Aligned_cols=49 Identities=37% Similarity=0.316 Sum_probs=36.3
Q ss_pred hhhhhhhcCCccHHHHHHhhccChHH--HHHHhCCCCChhhHHHHHHhhcccc
Q 018335 264 FHKKLSAAGIKTVQDFLKLSIVEPQR--LRKILGPGMSEKMWEVTMQHARKCV 314 (358)
Q Consensus 264 ~hk~L~~~~I~tV~dFLkl~~~d~~k--Lr~iLg~~ms~k~We~~v~HAktCv 314 (358)
.-.+|+..||+|++|||..-.....+ |-+-+ |++.+-=...+.+|.=|.
T Consensus 7 ~~~~L~~~GI~t~~~Ll~~~~~~~~r~~La~~~--~i~~~~l~~w~~~AdL~r 57 (122)
T PF14229_consen 7 EAAKLKAAGIKTTGDLLEAGDTPLGRKALAKKL--GISERNLLKWVNQADLMR 57 (122)
T ss_pred HHHHHHHcCCCcHHHHHHcCCCHHHHHHHHHhc--CCCHHHHHHHHhHHHhhh
Confidence 45899999999999999987765555 65655 577776666677776543
No 11
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=74.88 E-value=2.5 Score=40.83 Aligned_cols=50 Identities=32% Similarity=0.417 Sum_probs=38.5
Q ss_pred eeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 255 LEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 255 Le~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
|.+||+. .-++|.++||.|++|++.+ +++.|.+++ |++.+..+.+.+-|.
T Consensus 4 i~gig~~--~~~~L~~~Gi~ti~dl~~~---~~~~L~~~~--g~~~~~a~~l~~~~~ 53 (310)
T TIGR02236 4 LPGVGPA--TAEKLREAGYDTFEAIAVA---SPKELSEIA--GISEGTAAKIIQAAR 53 (310)
T ss_pred cCCCCHH--HHHHHHHcCCCCHHHHHcC---CHHHHHhcc--CCCHHHHHHHHHHHH
Confidence 4455544 3489999999999998874 899999998 577777777766665
No 12
>PRK02406 DNA polymerase IV; Validated
Probab=74.82 E-value=2.9 Score=41.06 Aligned_cols=52 Identities=29% Similarity=0.339 Sum_probs=40.4
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcc
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAkt 312 (358)
+|..|-+||+.- -++|...||+|++|+.++ +...|++.||. .+..+.+||.-
T Consensus 169 pi~~l~giG~~~--~~~L~~~Gi~ti~dl~~l---~~~~L~~~fG~-----~~~~l~~~a~G 220 (343)
T PRK02406 169 PVEKIPGVGKVT--AEKLHALGIYTCADLQKY---DLAELIRHFGK-----FGRRLYERARG 220 (343)
T ss_pred CcchhcCCCHHH--HHHHHHcCCCcHHHHHhC---CHHHHHHHHhH-----HHHHHHHHhCC
Confidence 577777788653 488999999999999885 78899999973 46666667753
No 13
>PRK03352 DNA polymerase IV; Validated
Probab=69.88 E-value=2.1 Score=42.08 Aligned_cols=41 Identities=34% Similarity=0.502 Sum_probs=33.9
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCC
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGP 296 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~ 296 (358)
+|..|-+||+.. .++|...||+|++|++++ ++..|.+.||.
T Consensus 178 pl~~l~gig~~~--~~~L~~~Gi~ti~dl~~l---~~~~L~~~fG~ 218 (346)
T PRK03352 178 PTDALWGVGPKT--AKRLAALGITTVADLAAA---DPAELAATFGP 218 (346)
T ss_pred CHHHcCCCCHHH--HHHHHHcCCccHHHHhcC---CHHHHHHHhCh
Confidence 567777888854 488999999999999986 78889999974
No 14
>PRK03858 DNA polymerase IV; Validated
Probab=68.94 E-value=2.6 Score=42.16 Aligned_cols=48 Identities=35% Similarity=0.469 Sum_probs=36.2
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhH
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMW 303 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~W 303 (358)
+|..|-+||+.-. ++|.+.||+|++|+.. .++..|++.||..+-...|
T Consensus 174 pl~~l~Gig~~~~--~~L~~~Gi~t~~dl~~---l~~~~L~~~fG~~~~~~l~ 221 (396)
T PRK03858 174 PVRRLWGVGPVTA--AKLRAHGITTVGDVAE---LPESALVSLLGPAAGRHLH 221 (396)
T ss_pred ChhhcCCCCHHHH--HHHHHhCCCcHHHHhc---CCHHHHHHHhCcHHHHHHH
Confidence 4666667888644 8999999999999986 4788999999853333333
No 15
>PRK02794 DNA polymerase IV; Provisional
Probab=66.88 E-value=4.3 Score=41.25 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=42.8
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccC
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl 315 (358)
+|..|.+||+. .-++|...||+|++|+..+ +...|++.||. +|..+..+|.--+.
T Consensus 210 Pl~~L~GiG~~--~~~~L~~~GI~tigdL~~l---~~~~L~~rfG~-----~g~~l~~~a~G~d~ 264 (419)
T PRK02794 210 PVGIIWGVGPA--TAARLARDGIRTIGDLQRA---DEADLMRRFGS-----MGLRLWRLARGIDD 264 (419)
T ss_pred ChhhhCCCCHH--HHHHHHHhccchHHHHhhC---CHHHHHHHHhH-----HHHHHHHHhCCCCC
Confidence 45556667754 4589999999999998875 78899999973 68888888875543
No 16
>PRK14133 DNA polymerase IV; Provisional
Probab=65.05 E-value=6.1 Score=38.92 Aligned_cols=51 Identities=29% Similarity=0.438 Sum_probs=39.8
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
+|..|.+||+... ++|.+.||+|++|++++ +...|+..||. .|..+.++|.
T Consensus 174 pv~~l~gig~~~~--~~L~~~Gi~ti~dl~~l---~~~~L~~rfG~-----~g~~l~~~a~ 224 (347)
T PRK14133 174 PISKVHGIGKKSV--EKLNNIGIYTIEDLLKL---SREFLIEYFGK-----FGVEIYERIR 224 (347)
T ss_pred CccccCCCCHHHH--HHHHHcCCccHHHHhhC---CHHHHHHHHhH-----HHHHHHHHhC
Confidence 4666777776544 78999999999999885 77889999972 5777777774
No 17
>PRK03348 DNA polymerase IV; Provisional
Probab=64.73 E-value=4 Score=42.31 Aligned_cols=48 Identities=29% Similarity=0.419 Sum_probs=37.5
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhH
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMW 303 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~W 303 (358)
+|..|-+||+... ++|...||+|++||.++ +...|++.||..+-..-|
T Consensus 181 Pv~~L~GIG~~t~--~~L~~lGI~TigDLa~l---~~~~L~~~fG~~~g~~L~ 228 (454)
T PRK03348 181 PVRRLWGIGPVTE--EKLHRLGIETIGDLAAL---SEAEVANLLGATVGPALH 228 (454)
T ss_pred CccccCCCCHHHH--HHHHHcCCccHHHHhcC---CHHHHHHHHCHHHHHHHH
Confidence 6888888987644 88999999999999875 788899999743333333
No 18
>cd01700 PolY_Pol_V_umuC umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.
Probab=64.41 E-value=5.2 Score=39.27 Aligned_cols=51 Identities=35% Similarity=0.439 Sum_probs=39.6
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
+|..|-+||+... ++|...||+|++|+.++ +.+.|.+.||. .|.....+|+
T Consensus 177 pl~~l~gig~~~~--~~L~~~Gi~ti~dL~~~---~~~~L~~rfG~-----~~~~l~~~a~ 227 (344)
T cd01700 177 PVGDVWGIGRRTA--KKLNAMGIHTAGDLAQA---DPDLLRKKFGV-----VGERLVRELN 227 (344)
T ss_pred ChhhcCccCHHHH--HHHHHcCCCcHHHHhcC---CHHHHHHHHHH-----HHHHHHHHhC
Confidence 4666667777544 78999999999999986 77889999973 5666777765
No 19
>PRK01810 DNA polymerase IV; Validated
Probab=62.90 E-value=6.1 Score=39.78 Aligned_cols=51 Identities=31% Similarity=0.356 Sum_probs=39.1
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
+|..|-+||+.-. ++|...||+|++|+.++ +...|++.||. .+..+.+||.
T Consensus 180 pv~~l~giG~~~~--~~L~~~Gi~tigdL~~~---~~~~L~~rfG~-----~g~~l~~~a~ 230 (407)
T PRK01810 180 PVGEMHGIGEKTA--EKLKDIGIQTIGDLAKA---DEHILRAKLGI-----NGVRLQRRAN 230 (407)
T ss_pred CHhhcCCcCHHHH--HHHHHcCCCcHHHHHhC---CHHHHHHHHhH-----HHHHHHHHhc
Confidence 4566667776544 88999999999998774 77889999973 4666777776
No 20
>cd03586 PolY_Pol_IV_kappa DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a
Probab=61.73 E-value=6.6 Score=37.95 Aligned_cols=52 Identities=35% Similarity=0.468 Sum_probs=40.7
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcc
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAkt 312 (358)
+|..|-+||+. .-.+|...||+|++|+..+ ++..|.+.+| ..|....+||+-
T Consensus 172 pl~~l~gig~~--~~~~L~~~Gi~ti~dl~~~---~~~~L~~~~g-----~~~~~l~~~~~G 223 (334)
T cd03586 172 PVRKIPGVGKV--TAEKLKELGIKTIGDLAKL---DVELLKKLFG-----KSGRRLYELARG 223 (334)
T ss_pred CchhhCCcCHH--HHHHHHHcCCcCHHHHHcC---CHHHHHHHHh-----HHHHHHHHHhCC
Confidence 45666677754 4489999999999999875 7788999886 478888888863
No 21
>PRK03103 DNA polymerase IV; Reviewed
Probab=61.27 E-value=6.6 Score=39.59 Aligned_cols=52 Identities=29% Similarity=0.358 Sum_probs=39.6
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcc
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAkt 312 (358)
.|..|-+||+. .-++|...||+|++|+.++ ++..|++.||. .|..+.++|.-
T Consensus 182 pi~~l~gig~~--~~~~L~~~Gi~tigdl~~~---~~~~L~~~fG~-----~~~~l~~~a~G 233 (409)
T PRK03103 182 PVRKLFGVGSR--MEKHLRRMGIRTIGQLANT---PLERLKKRWGI-----NGEVLWRTANG 233 (409)
T ss_pred CHhhcCCccHH--HHHHHHHcCCCCHHHHhcC---CHHHHHHHHCH-----HHHHHHHHhcC
Confidence 56666678875 4588999999999998874 67889999973 46666666653
No 22
>PRK01172 ski2-like helicase; Provisional
Probab=61.13 E-value=8.7 Score=41.31 Aligned_cols=51 Identities=33% Similarity=0.595 Sum_probs=42.1
Q ss_pred eeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcc
Q 018335 255 LEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (358)
Q Consensus 255 Le~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAkt 312 (358)
|.++++. ..++|.++||.||.|+.. .++++|-+|+ |++++.=+.++++|+.
T Consensus 617 ip~~~~~--~a~~l~~~g~~~~~di~~---~~~~~~~~i~--~~~~~~~~~i~~~~~~ 667 (674)
T PRK01172 617 IPKVGRV--RARRLYDAGFKTVDDIAR---SSPERIKKIY--GFSDTLANAIVNRAMK 667 (674)
T ss_pred CCCCCHH--HHHHHHHcCCCCHHHHHh---CCHHHHHHHh--ccCHHHHHHHHHHHHH
Confidence 4445544 559999999999999887 6888898898 6899999999999875
No 23
>PRK01216 DNA polymerase IV; Validated
Probab=58.37 E-value=10 Score=38.05 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=38.0
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhh
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHA 310 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HA 310 (358)
+|..|.+||+.. ..+|...||+|++|+.++ +...|++.||. ..+..+-.+|
T Consensus 179 Pi~~l~giG~~~--~~~L~~~Gi~TigdL~~~---~~~~L~~rfG~----~~~~~L~~~a 229 (351)
T PRK01216 179 DIADIPGIGDIT--AEKLKKLGVNKLVDTLRI---EFDELKGIIGE----AKAKYLFSLA 229 (351)
T ss_pred CcccccCCCHHH--HHHHHHcCCCcHHHHhcC---CHHHHHHHHCH----HHHHHHHHHh
Confidence 577778888654 489999999999998865 67889999973 2344444555
No 24
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=56.87 E-value=29 Score=28.00 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=28.9
Q ss_pred CchHHHHHHHHHHhhHHHHHHhhhHHHHHHhHHHHHHHhhh
Q 018335 24 PSFASVIGEAVMVNSFQNFFSALEPLLRRVVNEEVQRGVSK 64 (358)
Q Consensus 24 p~~~~vi~e~~~~~s~q~~~~~lEp~lrrvV~EEve~~l~~ 64 (358)
.++-.++++.++-.--+=|=..|=.++.|+|++||+|..++
T Consensus 33 ~TlE~lvremLRPmLkeWLD~nLP~lVErlVr~EIeRi~rr 73 (73)
T PF10691_consen 33 RTLEDLVREMLRPMLKEWLDENLPGLVERLVREEIERIARR 73 (73)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcC
Confidence 35666777777666333344467778899999999997653
No 25
>cd01701 PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesion synthesis (TLS) polymerase found in eukaryotes. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Rev1 has both structural and enzymatic roles. Structurally, it is believed to interact with other nonclassical polymerases and replication machinery to act as a scaffold. Enzymatically, it catalyzes the specific insertion of dCMP opposite abasic sites. Rev1 interacts with the Rev7 subunit of the B-family TLS polymerase Pol zeta (Rev3/Rev7). Rev1 is known to actively promote the introduction of mutations, potentially making it a significant target for cancer treatment.
Probab=56.49 E-value=9.8 Score=38.64 Aligned_cols=54 Identities=28% Similarity=0.276 Sum_probs=39.5
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
+|..|.+||+. .-++|...||.|+.|+..+- .++..|++.||. +.+..+..+|.
T Consensus 223 Pv~~l~GIG~~--~~~~L~~~Gi~t~~dl~~~~-~~~~~L~~~fG~----~~g~~L~~~a~ 276 (404)
T cd01701 223 KVGDLPGVGSS--LAEKLVKLFGDTCGGLELRS-KTKEKLQKVLGP----KTGEKLYDYCR 276 (404)
T ss_pred CHhHhCCCCHH--HHHHHHHcCCcchHHHHhCc-ccHHHHHHHHCH----HHHHHHHHHhC
Confidence 67777788865 45999999999999998762 137889999973 34555555553
No 26
>COG3743 Uncharacterized conserved protein [Function unknown]
Probab=54.38 E-value=15 Score=33.02 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=44.0
Q ss_pred CCceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHH-HHHhhcc
Q 018335 249 EDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEV-TMQHARK 312 (358)
Q Consensus 249 ~DeVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~-~v~HAkt 312 (358)
.|+.-+|.+||.. +-+.|+..||+|-.|.-.+-..|-..+-..| +..-+.|.. -|+.|+.
T Consensus 66 ~DDLt~I~GIGPk--~e~~Ln~~GI~tfaQIAAwt~~di~~id~~l--~f~GRi~RDdWi~QAk~ 126 (133)
T COG3743 66 KDDLTRISGIGPK--LEKVLNELGIFTFAQIAAWTRADIAWIDDYL--NFDGRIERDDWIAQAKA 126 (133)
T ss_pred cccchhhcccCHH--HHHHHHHcCCccHHHHHhcCHHHHHHHHhhc--CCcchhHHHHHHHHHHH
Confidence 3999999999986 6799999999997766555444444455556 677777765 6666653
No 27
>cd00424 PolY Y-family of DNA polymerases. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Most TLS polymerases are members of the Y-family, including Pol eta, Pol kappa/IV, Pol iota, Rev1, and Pol V, which is found exclusively in bacteria. In eukaryotes, the B-family polymerase Pol zeta also functions as a TLS polymerase. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in ord
Probab=54.33 E-value=9.1 Score=37.65 Aligned_cols=55 Identities=27% Similarity=0.170 Sum_probs=40.8
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccC-hHHHHHHhCCCCChhhHHHHHHhhccccC
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVE-PQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d-~~kLr~iLg~~ms~k~We~~v~HAktCvl 315 (358)
+|..|-+||+.-. ++|.+.||+|++|+.++ + ...|+..+| +.+..+.++|.--+.
T Consensus 174 pi~~l~giG~~~~--~~L~~~Gi~ti~dl~~~---~~~~~l~~~fg-----~~~~~l~~~a~G~d~ 229 (343)
T cd00424 174 PLTDLPGIGAVTA--KRLEAVGINPIGDLLAA---SPDALLALWGG-----VSGERLWYALRGIDD 229 (343)
T ss_pred ChhhcCCCCHHHH--HHHHHcCCCcHHHHhcC---CHHHHHHHHhh-----HHHHHHHHHhCCcCC
Confidence 4667777887544 89999999999998865 5 556777775 357777778765443
No 28
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=49.88 E-value=11 Score=29.28 Aligned_cols=37 Identities=35% Similarity=0.391 Sum_probs=23.8
Q ss_pred hhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHH
Q 018335 265 HKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVT 306 (358)
Q Consensus 265 hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~ 306 (358)
...|..+||+||+|++++ +++.|.++= |+..+.-+.+
T Consensus 24 ~n~L~~~~I~tv~dL~~~---s~~~L~~i~--n~G~ksl~EI 60 (66)
T PF03118_consen 24 YNCLKRAGIHTVGDLVKY---SEEDLLKIK--NFGKKSLEEI 60 (66)
T ss_dssp HHHHHCTT--BHHHHHCS----HHHHHTST--TSHHHHHHHH
T ss_pred HHHHHHhCCcCHHHHHhC---CHHHHHhCC--CCCHhHHHHH
Confidence 367899999999997765 667788775 4445544443
No 29
>PF04994 TfoX_C: TfoX C-terminal domain; InterPro: IPR007077 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes []. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found in association with the N-terminal domain in some, but not all members of this group, suggesting this is an autonomous and functionally unrelated domain. For example it is found associated with Q9JZR1 from SWISSPROT in IPR002125 from INTERPRO.; PDB: 3BQT_A 3MAB_A.
Probab=49.12 E-value=6 Score=32.05 Aligned_cols=30 Identities=33% Similarity=0.477 Sum_probs=18.4
Q ss_pred eeeeeecccchhhhhhhhcCCccHHHHHHhhc
Q 018335 253 WRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSI 284 (358)
Q Consensus 253 wRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~ 284 (358)
..|-+||.. .-+.|.+.||+||+||..+=.
T Consensus 6 ~~LpNig~~--~e~~L~~vGI~t~~~L~~~Ga 35 (81)
T PF04994_consen 6 KDLPNIGPK--SERMLAKVGIHTVEDLRELGA 35 (81)
T ss_dssp CGSTT--HH--HHHHHHHTT--SHHHHHHHHH
T ss_pred hhCCCCCHH--HHHHHHHcCCCCHHHHHHhCH
Confidence 334455554 338999999999999987643
No 30
>cd01703 PolY_Pol_iota DNA Polymerase iota. Pol iota, also called Rad30B, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol iota is thought to be one of the least efficient polymerases, particularly when opposite pyrimidines; it can incorporate the correct nucleotide opposite a purine much more efficiently than opposite a pyrimidine, and prefers to insert guanosine instead of adenosine opposite thymidine. Pol iota is believed to use Hoogsteen rather than Watson-Crick base pairing, which may explain the varying efficiency for different template nucleotides.
Probab=47.97 E-value=10 Score=38.53 Aligned_cols=58 Identities=24% Similarity=0.253 Sum_probs=40.7
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhc------------cChHHHHHHhCCCCChhhHHHHHHhhcccc
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSI------------VEPQRLRKILGPGMSEKMWEVTMQHARKCV 314 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~------------~d~~kLr~iLg~~ms~k~We~~v~HAktCv 314 (358)
+|..|-+||+... ++|.+.||.|++|+..+-+ .+.+.|++.||. +.+..+.++|.--+
T Consensus 173 pv~~l~GiG~~~~--~kL~~~GI~tigdl~~~~~~~~~~~~~~~~~~s~~~L~~~fG~----~~g~~l~~~a~G~d 242 (379)
T cd01703 173 DLRKIPGIGYKTA--AKLEAHGISSVRDLQEFSNRNRQTVGAAPSLLELLLMVKEFGE----GIGQRIWKLLFGRD 242 (379)
T ss_pred CccccCCcCHHHH--HHHHHcCCCcHHHHHhCCcccccccccccccccHHHHHHHHCH----HHHHHHHHHHCCCC
Confidence 4555567887755 8999999999999987641 127789999973 34555556665444
No 31
>cd01702 PolY_Pol_eta DNA Polymerase eta. Pol eta, also called Rad30A, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Unlike other Y-family members, Pol eta can efficiently and accurately replicate DNA past UV-induced lesions. Its activity is initiated by two simultaneous interactions: the PIP box in pol eta interacting with PCNA, and the UBZ (ubiquitin-binding zinc finger) in pol eta interacting with monoubiquitin attached to PCNA. Pol eta is more efficient in copying damaged DNA than undamaged DNA and seems to recognize when a lesion has been passed, facilitating a lesion-dependent dissociation from the DNA.
Probab=47.41 E-value=8.9 Score=38.62 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=38.3
Q ss_pred ceeeeeeecccchhhhh-hhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcc
Q 018335 251 EVWRLEKIGKDGAFHKK-LSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~-L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAkt 312 (358)
+|..|-+||+. .-++ |+..||.|++|+.++. .++..|++.||. +.++.+..+|+-
T Consensus 183 pv~~l~GiG~~--~~~~ll~~~Gi~ti~dl~~~~-~~~~~L~~~fG~----~~g~~l~~~a~G 238 (359)
T cd01702 183 PITSIRGLGGK--LGEEIIDLLGLPTEGDVAGFR-SSESDLQEHFGE----KLGEWLYNLLRG 238 (359)
T ss_pred cHHHhCCcCHH--HHHHHHHHcCCcCHHHHHhcc-CCHHHHHHHHHH----HHHHHHHHHhCC
Confidence 47777788843 2244 5889999999998764 478889999873 344555555553
No 32
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=46.77 E-value=17 Score=34.76 Aligned_cols=54 Identities=31% Similarity=0.501 Sum_probs=37.8
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
...-|.+|+.+.+ ++|..+||.|+++|+++ +++++..+| +......+.+.+.|.
T Consensus 149 ~L~Qlp~i~~~~~--~~l~~~~i~~l~~l~~~---~~~e~~~ll--~~~~~~~~~i~~~~~ 202 (314)
T PF02889_consen 149 PLLQLPHIGEESL--KKLEKRGIKTLQDLRDL---SPEELEELL--NRNPPFGKEILEVAS 202 (314)
T ss_dssp GGGGSTT--HHHH--HHHHHTT--SHHHHHHS----HHHHHHHH---S-HHHHHHHHHHHC
T ss_pred hhhcCCCCCHHHH--HHHhccCCCcHHHHhhC---CHHHHHHHH--hhhhhhHHHHHHHHH
Confidence 3455667777755 89999999999999965 899999999 566788888888875
No 33
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=45.47 E-value=12 Score=32.22 Aligned_cols=38 Identities=32% Similarity=0.559 Sum_probs=29.0
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHh
Q 018335 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKIL 294 (358)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iL 294 (358)
.+|..+||.. |..-|..+||.||+++- ..+|++|.+-+
T Consensus 55 L~ri~gi~~~--~a~LL~~AGv~Tv~~LA---~~~p~~L~~~l 92 (122)
T PF14229_consen 55 LMRIPGIGPQ--YAELLEHAGVDTVEELA---QRNPQNLHQKL 92 (122)
T ss_pred hhhcCCCCHH--HHHHHHHhCcCcHHHHH---hCCHHHHHHHH
Confidence 4466666655 66899999999999984 47888887644
No 34
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=43.91 E-value=36 Score=28.33 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=29.1
Q ss_pred hcCCccHHHHHHhhccChHH---HHHHhCCCCChhhHHHHHHhhcc
Q 018335 270 AAGIKTVQDFLKLSIVEPQR---LRKILGPGMSEKMWEVTMQHARK 312 (358)
Q Consensus 270 ~~~I~tV~dFLkl~~~d~~k---Lr~iLg~~ms~k~We~~v~HAkt 312 (358)
...| +++||+=++..||.| |+++| .|+..++-|+.
T Consensus 52 ~~k~-~~eD~~FliR~D~~Kl~Rl~~lL-------~~k~~~k~ark 89 (92)
T cd07978 52 RGKV-KVEDLIFLLRKDPKKLARLRELL-------SMKDELKKARK 89 (92)
T ss_pred CCCC-CHHHHHHHHhcCHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 3466 999999999999976 55667 79999998875
No 35
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=39.57 E-value=1.1e+02 Score=31.78 Aligned_cols=45 Identities=29% Similarity=0.384 Sum_probs=30.9
Q ss_pred cccCCCCCccccccEEEEecCceeecCCeEEecCCccccCCceEEEEEeec
Q 018335 164 VKERTGKRPLLTGDVNVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVAR 214 (358)
Q Consensus 164 V~~R~Gk~pLL~Gdl~v~L~~Gva~l~di~FtDnSs~~rSrKFRLgarv~~ 214 (358)
+-+=+|+...++.++.|.= +| .+-|||+||.--.|.|-+++--.+
T Consensus 152 ~~~~~G~~~kf~N~ldI~~-~g-----~vyFTDSSsk~~~rd~~~a~l~g~ 196 (376)
T KOG1520|consen 152 ADEAEGKPFKFLNDLDIDP-EG-----VVYFTDSSSKYDRRDFVFAALEGD 196 (376)
T ss_pred cccccCeeeeecCceeEcC-CC-----eEEEeccccccchhheEEeeecCC
Confidence 3344777766776666554 44 488999999766688888776553
No 36
>PF11754 Velvet: Velvet factor; InterPro: IPR021740 The velvet factor is conserved in many fungal species and is found to have gained different roles depending on the organism's need, expanding the conserved role in developmental programmes []. The velvet factor orthologues can be adapted to the fungal-specific life cycle and may be involved in diverse functions such as sclerotia formation and toxin production, as in Aspergillus parasiticus [], nutrition-dependent sporulation, as in A. fumigatus [], or the microconidia-to-macroconidia ratio and cell wall formation, as in the heterothallic fungus Gibberella moniliformis (Fusarium verticillioides).
Probab=37.97 E-value=3.4e+02 Score=25.32 Aligned_cols=62 Identities=23% Similarity=0.270 Sum_probs=37.7
Q ss_pred CccccccEEEEe-----cCce--eecCCeEEecCCccccCCceEEEEEeecCCC-------CceeeeeeeecceEEeec
Q 018335 171 RPLLTGDVNVTA-----RDGV--APIGDIEFTDNSSWIRSRKFRIGAKVARGSY-------QGVRICEAITDAFVVKDH 235 (358)
Q Consensus 171 ~pLL~Gdl~v~L-----~~Gv--a~l~di~FtDnSs~~rSrKFRLgarv~~~~~-------~g~RI~EAvse~FvVkd~ 235 (358)
.+.|.|.+...+ .+|. |.. ..|.|=|-. .-+.|||-.++..=.. ...-+-|+.|+||.|-..
T Consensus 97 ~r~L~Gs~vss~~~l~d~~~~~~g~f--FvF~DLsVR-~eG~frLrf~l~~i~~~~~~~~~~~~~la~~~S~~F~V~s~ 172 (203)
T PF11754_consen 97 TRNLVGSLVSSAFRLKDPDGKEPGGF--FVFPDLSVR-TEGRFRLRFSLFDIGPSPGQGGGSSPVLAEVFSDPFTVYSA 172 (203)
T ss_pred cccCcccEeeeeEEecCCCCCeEEEE--EEeCCceEC-cCCEEEEEEEEEEecCCccccCCCCcEEEEEECcCEEEECH
Confidence 367888865443 2343 221 233443332 2478999998885322 235678999999999653
No 37
>KOG4233 consensus DNA-bridging protein BAF [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=36.71 E-value=38 Score=28.32 Aligned_cols=56 Identities=32% Similarity=0.499 Sum_probs=40.3
Q ss_pred CCCCCceeeeeeecccchhhhhhhhcCCcc----HHHHHHhhccChHHHH----HHhCCCCChhhHHHHHHhhccc
Q 018335 246 PMLEDEVWRLEKIGKDGAFHKKLSAAGIKT----VQDFLKLSIVEPQRLR----KILGPGMSEKMWEVTMQHARKC 313 (358)
Q Consensus 246 P~L~DeVwRLe~IgKdG~~hk~L~~~~I~t----V~dFLkl~~~d~~kLr----~iLg~~ms~k~We~~v~HAktC 313 (358)
|+=+-+|--|.+||.. +-.+|..+|+.. .++|| ++.+|++-.+ ...| ++-+||++|
T Consensus 15 PmGeK~V~~laGIg~~--lg~~L~~~GfdkAYvllGQfL-llkKdE~lF~~Wlk~~~g---------at~~~a~~~ 78 (90)
T KOG4233|consen 15 PMGEKDVTWLAGIGET--LGIKLVDAGFDKAYVLLGQFL-LLKKDEDLFQEWLKETCG---------ATAKQAQDC 78 (90)
T ss_pred ccCCCcceeeccccHH--hhhhHHhccccHHHHHHHHHH-HhcccHHHHHHHHHHHcC---------ccHHHHHHH
Confidence 6667789999999976 558999999976 46776 4567876544 4454 366777777
No 38
>cd03468 PolY_like DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.
Probab=36.32 E-value=32 Score=33.20 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=28.9
Q ss_pred eecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCC
Q 018335 257 KIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGP 296 (358)
Q Consensus 257 ~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~ 296 (358)
+||+... .+|.+.||+|++||..+ +...|++.||.
T Consensus 177 gig~~~~--~~L~~~Gi~t~~dl~~~---~~~~l~~rfG~ 211 (335)
T cd03468 177 RLPPETV--ELLARLGLRTLGDLAAL---PRAELARRFGL 211 (335)
T ss_pred CCCHHHH--HHHHHhCcccHHHHHhC---ChHHHHhhcCH
Confidence 6776644 89999999999998875 67789999974
No 39
>TIGR02979 phageshock_pspD phage shock protein PspD. Members of this family are phage shock protein PspD, found in a minority of bacteria that carry the defining genes of the phage shock regulon (pspA, pspB, pspC, and pspF). It is found in Escherichia coli, Yersinia pestis, and closely related species, where it is part of the phage shock operon. It is known to be expressed but its function is unknown.
Probab=36.22 E-value=45 Score=26.17 Aligned_cols=14 Identities=50% Similarity=0.802 Sum_probs=11.4
Q ss_pred HHHhhhHHHHHHhH
Q 018335 42 FFSALEPLLRRVVN 55 (358)
Q Consensus 42 ~~~~lEp~lrrvV~ 55 (358)
+.-.|||+|+|..+
T Consensus 40 La~aLEPllkr~~~ 53 (59)
T TIGR02979 40 LAIALEPMLKRAAN 53 (59)
T ss_pred HHHHHHHHHHHHHH
Confidence 45599999999865
No 40
>PF09584 Phageshock_PspD: Phage shock protein PspD (Phageshock_PspD); InterPro: IPR014321 Members of this entry are phage shock protein PspD, they are found in a minority of bacteria that carry the defining genes of the phage shock regulon (pspA, pspB, pspC, and pspF). It is found in Escherichia coli, Yersinia pestis, and closely related species, where it is part of the phage shock operon. It is known to be expressed but its function is unknown.
Probab=34.65 E-value=46 Score=26.65 Aligned_cols=15 Identities=60% Similarity=0.802 Sum_probs=12.0
Q ss_pred HHHhhhHHHHHHhHH
Q 018335 42 FFSALEPLLRRVVNE 56 (358)
Q Consensus 42 ~~~~lEp~lrrvV~E 56 (358)
+.-.|||+|||.++-
T Consensus 45 La~~LEPllrr~~~~ 59 (66)
T PF09584_consen 45 LALALEPLLRRGLNK 59 (66)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455899999999764
No 41
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=32.45 E-value=19 Score=39.19 Aligned_cols=39 Identities=33% Similarity=0.408 Sum_probs=32.5
Q ss_pred CCCCCceeeeeeecccchhhhhhhhcCCccHHHHHHhhccC
Q 018335 246 PMLEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVE 286 (358)
Q Consensus 246 P~L~DeVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d 286 (358)
+.|++.|-.|++||+.-+ +.|++.||+||.|.|..+=+.
T Consensus 5 ~~~~~~~~~l~gvg~~~~--~~l~~lgi~t~~dll~~~P~~ 43 (681)
T PRK10917 5 LLLDAPLTSLKGVGPKTA--EKLAKLGIHTVQDLLLHLPRR 43 (681)
T ss_pred ccccCChhhcCCCCHHHH--HHHHHcCCCCHHHHhhcCCCc
Confidence 457789999999987644 889999999999999887543
No 42
>TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication. NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic.
Probab=32.44 E-value=67 Score=22.48 Aligned_cols=42 Identities=29% Similarity=0.344 Sum_probs=31.9
Q ss_pred hhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 265 HKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 265 hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
-.+|..+||.||+++.. .+++.|..+- |++...=+.++.=|+
T Consensus 6 ~~~L~~~G~~s~e~la~---~~~~eL~~i~--g~~~e~a~~ii~~a~ 47 (50)
T TIGR01954 6 AQLLVEEGFTTVEDLAY---VPIDELLSIE--GFDEETAKELINRAR 47 (50)
T ss_pred HHHHHHcCCCCHHHHHc---cCHHHHhcCC--CCCHHHHHHHHHHHH
Confidence 36799999999999765 5677888876 578777666666554
No 43
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=31.70 E-value=1.7e+02 Score=27.32 Aligned_cols=92 Identities=18% Similarity=0.300 Sum_probs=59.7
Q ss_pred HHHHHHHHh-hHHHHHHh-hhHHHHHHhHHHHHHHhhhcCCC-CcccCCCccccccCCCCceEEEEccCCCCCcccCCce
Q 018335 29 VIGEAVMVN-SFQNFFSA-LEPLLRRVVNEEVQRGVSKYNPC-RSLTRSSSLRIQALEPSSLKLIFSQKLSLPIFTGSKI 105 (358)
Q Consensus 29 vi~e~~~~~-s~q~~~~~-lEp~lrrvV~EEve~~l~~~~~~-~~~~rs~~~~i~~~~~~~~~L~F~n~l~~pifT~~kI 105 (358)
-|+|.+..+ +.-.+|+. +|-++++|++|+.-....-..|. .+..|-+...++......+.|+|...=+.-+||++=+
T Consensus 13 ~i~~si~a~l~~~~~~~~l~~Qlm~kVmkek~s~~~~~~~~~~k~v~~ksgikvvk~s~vk~~~r~d~gqp~~V~~tdLv 92 (176)
T COG4766 13 RIRESIIAQLPEGQFTKELVEQLMEKVMKEKQSLECGWMQPSFKSVDGKSGIKVVKLSSVKFGLRFDTGQPDCVYTTDLV 92 (176)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHhchhhhhhhhcccceeecccCCceeEEecccceeEeeecCCCCCeEEeecee
Confidence 455554443 24446664 57789999999977765433321 1223222233332233468889988777889999999
Q ss_pred eecCCCCeEEEEEEc
Q 018335 106 TDVENNPLQIVVVDT 120 (358)
Q Consensus 106 ~a~~g~~i~V~l~D~ 120 (358)
.-.+|.++-+.+..-
T Consensus 93 t~~~g~~l~aG~m~~ 107 (176)
T COG4766 93 TEQEGSRLGAGLMEM 107 (176)
T ss_pred ecccCCccccceeee
Confidence 999999999998774
No 44
>PF06594 HCBP_related: Haemolysin-type calcium binding protein related domain; InterPro: IPR010566 This family consists of a number of bacteria specific domains, which are found in haemolysin-type calcium binding proteins. This family is found in conjunction with IPR001343 from INTERPRO and is often found in multiple copies.
Probab=30.50 E-value=31 Score=24.33 Aligned_cols=18 Identities=39% Similarity=0.745 Sum_probs=14.9
Q ss_pred eeecCCeEEecCCccccC
Q 018335 186 VAPIGDIEFTDNSSWIRS 203 (358)
Q Consensus 186 va~l~di~FtDnSs~~rS 203 (358)
-..+..+.|-|++.|.+.
T Consensus 24 ~~~Ie~i~FaDGt~w~~~ 41 (43)
T PF06594_consen 24 SYRIEQIEFADGTVWTRA 41 (43)
T ss_pred CCcEeEEEEcCCCEecHH
Confidence 566889999999999753
No 45
>PRK10497 peripheral inner membrane phage-shock protein; Provisional
Probab=30.13 E-value=63 Score=26.35 Aligned_cols=15 Identities=53% Similarity=0.820 Sum_probs=11.9
Q ss_pred HHHhhhHHHHHHhHH
Q 018335 42 FFSALEPLLRRVVNE 56 (358)
Q Consensus 42 ~~~~lEp~lrrvV~E 56 (358)
+.-.|||+|||.++-
T Consensus 52 L~~~LEPlLkr~~~~ 66 (73)
T PRK10497 52 LAVALEPLLKRAANK 66 (73)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445899999999754
No 46
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=28.28 E-value=98 Score=30.23 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=12.8
Q ss_pred hhhHHHHHHhHHHHHHH
Q 018335 45 ALEPLLRRVVNEEVQRG 61 (358)
Q Consensus 45 ~lEp~lrrvV~EEve~~ 61 (358)
-||-++|+|+.|++-..
T Consensus 89 ~i~~lv~~v~~e~~~~~ 105 (233)
T PRK15457 89 LVAQLMEKVMKEKQSLE 105 (233)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 36779999998887543
No 47
>PRK07758 hypothetical protein; Provisional
Probab=27.18 E-value=98 Score=26.40 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=24.7
Q ss_pred hhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHH
Q 018335 266 KKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTM 307 (358)
Q Consensus 266 k~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v 307 (358)
..|..+||+||+|+.+ .+++.|-++= |+..+.-+.+.
T Consensus 48 N~Lk~AGI~TL~dLv~---~te~ELl~ik--nlGkKSL~EIk 84 (95)
T PRK07758 48 RALEHHGIHTVEELSK---YSEKEILKLH--GMGPASLPKLR 84 (95)
T ss_pred HHHHHcCCCcHHHHHc---CCHHHHHHcc--CCCHHHHHHHH
Confidence 6788999999999876 4555566553 44455555443
No 48
>PRK05256 condesin subunit E; Provisional
Probab=26.80 E-value=86 Score=30.66 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=39.7
Q ss_pred hhhhhcCCccHHHHHHhhc--cChHHHHHHhC--CCCChhhHHHHHHhhcccc
Q 018335 266 KKLSAAGIKTVQDFLKLSI--VEPQRLRKILG--PGMSEKMWEVTMQHARKCV 314 (358)
Q Consensus 266 k~L~~~~I~tV~dFLkl~~--~d~~kLr~iLg--~~ms~k~We~~v~HAktCv 314 (358)
++|++.||+|+++.+.-+. .|+++|.+.++ ..-|+-+-+++.+-.++|-
T Consensus 107 erLa~~gift~qeL~deL~~ladE~kllklvn~R~~GsDlD~~Kl~ekvr~sL 159 (238)
T PRK05256 107 ERLAHEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDLDKQKLQEKVRTSL 159 (238)
T ss_pred HHHhcCCceeHHHHHHHHHHhhcHHHHHHHhcCCCCcchhhHHHHHHHHHHHH
Confidence 7999999999999887653 58999999885 2237777788888888885
No 49
>PRK14973 DNA topoisomerase I; Provisional
Probab=25.95 E-value=55 Score=37.55 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=44.8
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcc
Q 018335 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (358)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAkt 312 (358)
.=.++++|-+.. .+|..+||.||+|+++. |+.+|-..- |++.+.-..+..+|+.
T Consensus 879 l~~vkg~ge~t~--~~l~~ag~~~~e~l~~~---d~~~la~~~--~i~~k~~~~~~~~~~~ 932 (936)
T PRK14973 879 LLSVPGLGETTL--EKLYLAGVYDGDLLVSA---DPKKLAKVT--GIDEKKLRNLQAYAKK 932 (936)
T ss_pred hhhccCCCHHHH--HHHHHcCCCCHHHhccC---CHHHHhhhc--CCCHHHHHHHHHHHhh
Confidence 345678888877 89999999999999987 888998876 6888888888888763
No 50
>PF09816 EAF: RNA polymerase II transcription elongation factor; InterPro: IPR019194 This entry represents the N-terminal domain of ELL-associated factor (Eaf) proteins, which act as transcriptional transactivators of ELL and ELL2 RNA Polymerase II (Pol II) transcriptional elongation factors [, , , ]. Eaf proteins form a stable heterodimer complex with ELL proteins to facilitate the binding of RNA polymerase II to activate transcription elongation. ELL and EAF1 are components of Cajal bodies, which have a role in leukemogenesis []. EAF1 also has the capacity to interact with ELL1 and ELL2. The N terminus of approx 120 of EAF1 has a region of high serine, aspartic acid, and glutamic acid residues [, ].
Probab=25.35 E-value=2.5e+02 Score=23.60 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=41.6
Q ss_pred CcccCCCccccccC-CCCceEEEEcc-CCC----CCcccCCceeecCCCCeEEEEEEcCCCCeeecCCCCCcceEE
Q 018335 69 RSLTRSSSLRIQAL-EPSSLKLIFSQ-KLS----LPIFTGSKITDVENNPLQIVVVDTRSNGLIAPASLPQPIKIE 138 (358)
Q Consensus 69 ~~~~rs~~~~i~~~-~~~~~~L~F~n-~l~----~pifT~~kI~a~~g~~i~V~l~D~~t~n~iv~~g~~ss~kve 138 (358)
.++..+.+..+... ....++|.|-+ .-. .-+|.|..=. ...-=.|-+||..++ ..+-..+.+.+++.
T Consensus 31 ~S~d~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~f~G~~~~--~~~~ecVLifD~~~~-~f~LErl~s~~~~n 103 (109)
T PF09816_consen 31 ASVDTSKPGTLYVGSSNDEYTLTLPNPNGSGNNETYVFKGSQRP--SKEKECVLIFDPETG-EFVLERLSSTINLN 103 (109)
T ss_pred CCCCCCCCeEEEecCCCCeEEEEEeCCCCCCCcccEEEEeccCC--CCCcEEEEEEECCCC-EEEEEEcceEEEEE
Confidence 44555544555443 55679999933 221 2589997322 233445888999888 88877776666554
No 51
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=24.59 E-value=82 Score=35.45 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=22.9
Q ss_pred cHHHHHHhhccChHHHHHH-hC---CCCChhhHHHHHHhhccccC
Q 018335 275 TVQDFLKLSIVEPQRLRKI-LG---PGMSEKMWEVTMQHARKCVM 315 (358)
Q Consensus 275 tV~dFLkl~~~d~~kLr~i-Lg---~~ms~k~We~~v~HAktCvl 315 (358)
.-+|||.++-..-++||+- +- +--.-+..+.+.-||..=.+
T Consensus 224 ~qeeyle~L~~qI~~lr~n~w~e~hIprPy~~Fes~L~~~~~h~L 268 (759)
T KOG1104|consen 224 PQEEYLELLWAQIQKLRQNDWAENHIPRPYLGFESTLVHALQHNL 268 (759)
T ss_pred hHHHHHHHHHHHHHHHHhcCcccccCCCchhhHHHHHHHhcccCC
Confidence 4567777776666666631 00 01233456777778775444
No 52
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=22.98 E-value=1.8e+02 Score=26.20 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=25.9
Q ss_pred EEEecCceeecCCeEEecCCccccCCceEEEEEeec
Q 018335 179 NVTARDGVAPIGDIEFTDNSSWIRSRKFRIGAKVAR 214 (358)
Q Consensus 179 ~v~L~~Gva~l~di~FtDnSs~~rSrKFRLgarv~~ 214 (358)
.-.|+|++|-..|+.|.--|. |.+.|-|-.-+..
T Consensus 74 tavmknqvA~FnDLRFvGRSG--RGKsFtltItv~t 107 (135)
T PF00853_consen 74 TAVMKNQVARFNDLRFVGRSG--RGKSFTLTITVFT 107 (135)
T ss_dssp EEEEETTEEEESS-EECST-T--TTSEEEEEEEE-S
T ss_pred hhhhhcccccccccccccccC--CccceEEEEEEeC
Confidence 578999999999999998776 4556999887764
No 53
>PTZ00205 DNA polymerase kappa; Provisional
Probab=22.92 E-value=73 Score=34.77 Aligned_cols=53 Identities=21% Similarity=0.363 Sum_probs=36.8
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhc-----cChHHHHHHhCCCCChhhHHH
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSI-----VEPQRLRKILGPGMSEKMWEV 305 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~-----~d~~kLr~iLg~~ms~k~We~ 305 (358)
+|-+|-+||+... ++|...||+|++|+.+.-. ..+..|+.+||..+--..|..
T Consensus 310 pV~ki~GIG~~t~--~~L~~~GI~TigDLa~~~~~l~~~f~~k~l~~llG~~~G~~l~~~ 367 (571)
T PTZ00205 310 GLRSVPGVGKVTE--ALLKGLGITTLSDIYNRRVELCYILHNNLFRFLLGASIGIMQWPD 367 (571)
T ss_pred CcceeCCcCHHHH--HHHHHcCCCcHHHHhcCCHHHHHHhHHHHHHHHhCchhhHHHHHH
Confidence 5778889998866 8999999999999976421 223457788874333334543
No 54
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=21.45 E-value=1.2e+02 Score=29.14 Aligned_cols=53 Identities=19% Similarity=0.304 Sum_probs=37.9
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhh
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHA 310 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HA 310 (358)
+.+-|.+|+++- .++|.++||.|.+|+..+ +++++..++| +..+.=+.+.+.+
T Consensus 152 ~L~Qlp~i~~~~--~~~l~~~~i~s~~~l~~~---~~~~~~~ll~--~~~~~~~~i~~~~ 204 (312)
T smart00611 152 PLLQLPHLPEEI--LKRLEKKKVLSLEDLLEL---EDEERGELLG--LLDAEGERVYKVL 204 (312)
T ss_pred ccccCCCCCHHH--HHHHHhCCCCCHHHHHhc---CHHHHHHHHc--CCHHHHHHHHHHH
Confidence 355577777764 488999999999998765 7888998884 5555555555554
No 55
>PF13854 Kelch_5: Kelch motif
Probab=20.80 E-value=59 Score=22.47 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=19.9
Q ss_pred ccccCCCceEEEecCc--EEEEEccceeE
Q 018335 311 RKCVMGNKLYIFRGHN--CIILLNPICQV 337 (358)
Q Consensus 311 ktCvl~~k~y~y~~~~--~~l~FN~i~~l 337 (358)
-.|+.++++|+|=+.+ -...+|.+|.|
T Consensus 9 s~~~~~~~iyi~GG~~~~~~~~~~d~~~l 37 (42)
T PF13854_consen 9 SAVVVGNNIYIFGGYSGNNNSYSNDLYVL 37 (42)
T ss_pred EEEEECCEEEEEcCccCCCCCEECcEEEE
Confidence 3456689999998754 46778888865
No 56
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=20.70 E-value=1.2e+02 Score=23.51 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=20.1
Q ss_pred HHHHHHHHHh--hHHHHHHhhhHHHHHH
Q 018335 28 SVIGEAVMVN--SFQNFFSALEPLLRRV 53 (358)
Q Consensus 28 ~vi~e~~~~~--s~q~~~~~lEp~lrrv 53 (358)
+||..|...+ .|+.++...||.|++.
T Consensus 2 ~vI~~A~~GD~~A~~~IL~~y~~yI~kl 29 (65)
T PF12645_consen 2 EVIKAAKQGDPEAMEEILKHYEPYISKL 29 (65)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4666666654 4889999999999974
No 57
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=20.48 E-value=97 Score=27.89 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=25.0
Q ss_pred CcEEEEEccceeEeeeEECCeEeecccC
Q 018335 325 HNCIILLNPICQVVRAVINNQTYLTRDL 352 (358)
Q Consensus 325 ~~~~l~FN~i~~lvga~~~g~~~~~~~l 352 (358)
..+-+|||+...=+-+.++|+.|+++++
T Consensus 115 RdipVfy~~~~~~l~Veid~r~YtL~eF 142 (144)
T PF10657_consen 115 RDIPVFYNSLTRQLCVEIDRRTYTLDEF 142 (144)
T ss_pred ecCceEEccCCcEEEEEECCeEEehHhh
Confidence 4677999999999999999999999875
Done!