Query 018335
Match_columns 358
No_of_seqs 126 out of 148
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:39:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wcn_A Transcription elongatio 93.7 0.016 5.4E-07 44.6 0.8 62 248-316 5-67 (70)
2 2kz3_A Putative uncharacterize 90.7 0.24 8.3E-06 39.3 4.1 39 265-308 17-55 (83)
3 2i1q_A DNA repair and recombin 82.9 0.39 1.3E-05 44.5 1.4 59 250-315 3-61 (322)
4 3lda_A DNA repair protein RAD5 78.2 1.3 4.6E-05 43.5 3.5 62 250-316 81-142 (400)
5 1b22_A DNA repair protein RAD5 75.6 0.7 2.4E-05 38.6 0.6 62 251-317 24-85 (114)
6 2z43_A DNA repair and recombin 73.8 0.67 2.3E-05 43.4 0.0 57 251-314 13-69 (324)
7 1pzn_A RAD51, DNA repair and r 73.0 1.9 6.5E-05 41.2 3.0 59 251-316 36-94 (349)
8 1v5w_A DMC1, meiotic recombina 69.1 1.1 3.7E-05 42.5 0.3 58 251-313 26-83 (343)
9 3pzp_A DNA polymerase kappa; D 68.1 2.7 9.1E-05 42.9 2.9 51 252-312 340-390 (517)
10 4dez_A POL IV 1, DNA polymeras 68.0 1 3.5E-05 43.0 -0.1 40 252-296 180-219 (356)
11 3osn_A DNA polymerase IOTA; ho 66.1 2.7 9.4E-05 41.5 2.5 51 252-311 236-286 (420)
12 1t94_A Polymerase (DNA directe 61.1 4.3 0.00015 40.3 2.8 50 252-311 284-333 (459)
13 4f4y_A POL IV, DNA polymerase 57.2 4 0.00014 39.3 1.8 51 252-311 181-231 (362)
14 1jx4_A DNA polymerase IV (fami 56.5 2.7 9.3E-05 40.0 0.5 54 252-314 180-233 (352)
15 2aq4_A DNA repair protein REV1 56.2 3.8 0.00013 40.4 1.5 41 252-296 243-285 (434)
16 3bq0_A POL IV, DBH, DNA polyme 55.2 3.1 0.00011 39.7 0.6 55 252-315 181-235 (354)
17 3im1_A Protein SNU246, PRE-mRN 54.4 7.6 0.00026 36.7 3.2 54 251-311 158-211 (328)
18 1z3e_B DNA-directed RNA polyme 45.7 15 0.00052 28.2 3.1 36 266-306 22-57 (73)
19 3gqc_A DNA repair protein REV1 45.5 3.3 0.00011 42.3 -0.9 51 252-311 317-367 (504)
20 3k4g_A DNA-directed RNA polyme 42.2 20 0.00069 28.6 3.4 38 266-308 25-62 (86)
21 2q0z_X Protein Pro2281; SEC63, 42.2 19 0.00065 34.1 3.8 54 251-311 162-215 (339)
22 3gfk_B DNA-directed RNA polyme 32.1 19 0.00065 28.2 1.7 38 265-307 28-65 (79)
23 3mab_A Uncharacterized protein 31.2 12 0.00041 30.1 0.4 26 255-282 9-34 (93)
24 4ecq_A DNA polymerase ETA; tra 30.7 16 0.00054 36.1 1.3 54 252-314 255-309 (435)
25 1u9l_A Transcription elongatio 28.8 32 0.0011 26.1 2.4 50 261-315 15-64 (70)
26 3bqs_A Uncharacterized protein 27.8 15 0.00051 29.5 0.4 26 255-282 9-34 (93)
27 1coo_A RNA polymerase alpha su 26.6 36 0.0012 27.7 2.5 18 265-282 36-53 (98)
28 2va8_A SSO2462, SKI2-type heli 24.6 35 0.0012 34.8 2.6 48 254-311 661-708 (715)
29 2f8v_T Telethonin; sarcomere, 24.5 16 0.00053 32.5 -0.0 38 71-108 61-102 (167)
30 3euh_C MUKE, chromosome partit 22.3 87 0.003 29.3 4.5 49 266-314 107-159 (234)
31 3ukx_C Bimax2 peptide; arm rep 22.0 58 0.002 20.7 2.2 18 4-21 9-26 (28)
No 1
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=93.72 E-value=0.016 Score=44.56 Aligned_cols=62 Identities=29% Similarity=0.443 Sum_probs=51.0
Q ss_pred CCCceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcc-ccCC
Q 018335 248 LEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK-CVMG 316 (358)
Q Consensus 248 L~DeVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAkt-Cvl~ 316 (358)
+.|++-.|++|+..-+ ++|.++||+||+|+..+ +++.|-.|. |+|...=+.++.-|+. |-+.
T Consensus 5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~~---~~~eL~~i~--gise~kA~~ii~aAr~~~w~~ 67 (70)
T 1wcn_A 5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAEQ---GIDDLADIE--GLTDEKAGALIMAARNICWFG 67 (70)
T ss_dssp CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHTS---CHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHcC---CHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence 4567777887776655 99999999999997654 788899998 7999999999999998 7553
No 2
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=90.66 E-value=0.24 Score=39.35 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=30.1
Q ss_pred hhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHH
Q 018335 265 HKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQ 308 (358)
Q Consensus 265 hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~ 308 (358)
-++|.+++|.||+||+. .|+.+|.+++| +|-+.=-.+..
T Consensus 17 ~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~~--ls~~~v~~l~r 55 (83)
T 2kz3_A 17 IQLLRSHRIKTVVDLVS---ADLEEVAQKCG--LSYKALVALRR 55 (83)
T ss_dssp HHHHHHTTCCCHHHHTT---SCHHHHHHHHT--CCHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHh---CCHHHHHHHhC--CCHHHHHHHHH
Confidence 48899999999999975 69999999994 56544433333
No 3
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=82.87 E-value=0.39 Score=44.50 Aligned_cols=59 Identities=25% Similarity=0.240 Sum_probs=44.2
Q ss_pred CceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccC
Q 018335 250 DEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (358)
Q Consensus 250 DeVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl 315 (358)
+++..|++|+.. +-++|.++||+||+||+.+ ++..|-++. |+|.+.=+.+++.|+.+..
T Consensus 3 ~~~~~l~gi~~~--~~~kL~~~gi~t~~~~~~~---~~~~L~~~~--gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 3 DNLTDLPGVGPS--TAEKLVEAGYIDFMKIATA---TVGELTDIE--GISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp --CTTSTTCCHH--HHHHHHHHTCCSHHHHHTC---CHHHHHTST--TCCHHHHHHHHHHHHHHTT
T ss_pred ccHhhcCCCCHH--HHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CcCHHHHHHHHHHHHHhhh
Confidence 456667755544 5699999999999999864 577888877 6888877788888877654
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=78.19 E-value=1.3 Score=43.51 Aligned_cols=62 Identities=24% Similarity=0.199 Sum_probs=50.5
Q ss_pred CceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccCC
Q 018335 250 DEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG 316 (358)
Q Consensus 250 DeVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl~ 316 (358)
.++-+|+..|-.-..-++|.++||+||++|+. .++..|.++. |+|...=+.+++.|.+++..
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~---~~~~~L~~~~--gis~~~~~~i~~~a~~~~~~ 142 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAY---APRKDLLEIK--GISEAKADKLLNEAARLVPM 142 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHH---SCHHHHHTST--TCCHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence 46778888665555669999999999999985 5788999998 68888888888888876653
No 5
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=75.56 E-value=0.7 Score=38.57 Aligned_cols=62 Identities=31% Similarity=0.329 Sum_probs=50.4
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccCCC
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGN 317 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl~~ 317 (358)
+|.+|+..|-.-..-++|.++|++||++. ...++..|.++- |+|...=+.+++=|+.++.-+
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~--GIse~ka~kIi~aA~kl~~~g 85 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIK--GISEAKADKILAEAAKLVPMG 85 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTT--TCSTTHHHHHHHHHHHHSCCC
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHcc--CCCHHHHHHHHHHHHHHcccC
Confidence 68888855444456799999999999976 455888999997 789999999999999887543
No 6
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=73.77 E-value=0.67 Score=43.42 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcccc
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV 314 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCv 314 (358)
++.+|.+|+.. .-++|.++||+||++|+.. ++..|.++. |+|...=+.+++.|..+.
T Consensus 13 ~~~~l~g~~~~--~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--g~s~~~~~~~~~~~~~~~ 69 (324)
T 2z43_A 13 TINDLPGISQT--VINKLIEAGYSSLETLAVA---SPQDLSVAA--GIPLSTAQKIIKEARDAL 69 (324)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHcCCCCHH--HHHHHHHcCCCcHHHHHcC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 67888877665 4499999999999999854 455666666 566666666777776654
No 7
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.98 E-value=1.9 Score=41.16 Aligned_cols=59 Identities=29% Similarity=0.334 Sum_probs=45.9
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccCC
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG 316 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl~ 316 (358)
++.+|.+|+ -...++|.++||+||++++. .++..|.++. |+|...=+.+++.|.++...
T Consensus 36 ~l~~l~Gi~--~~~~~kL~~ag~~t~~~~~~---~~~~~L~~~~--~~s~~~~~~~l~~~~~~~~~ 94 (349)
T 1pzn_A 36 SIEDLPGVG--PATAEKLREAGYDTLEAIAV---ASPIELKEVA--GISEGTALKIIQAARKAANL 94 (349)
T ss_dssp CSSCCTTCC--HHHHHHHHTTTCCSHHHHHT---CCHHHHHHHH--CCCHHHHHHHHHHHHHHCST
T ss_pred cHHHcCCCC--HHHHHHHHHcCCCcHHHHHh---CCHHHHHhhc--CCCHHHHHHHHHHHhhhccc
Confidence 466666444 45779999999999999875 4788899988 57877778888888876643
No 8
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=69.13 E-value=1.1 Score=42.54 Aligned_cols=58 Identities=28% Similarity=0.267 Sum_probs=0.0
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccc
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKC 313 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktC 313 (358)
++++|+.-|-.-..-++|.++||+||++|+.. ++..|.++. |+|...=+.+++.|..+
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--~is~~~~~~~~~~a~~~ 83 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMT---TRRALCNVK--GLSEAKVDKIKEAANKL 83 (343)
T ss_dssp ---------------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CCCHHHHHHHHHHHHhh
Confidence 68899944444455699999999999999854 455666655 45555555566666544
No 9
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=68.07 E-value=2.7 Score=42.86 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=39.1
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcc
Q 018335 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (358)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAkt 312 (358)
|-+|-+||+.+. ++|...||+|++|+..+ +..|+..|| ...|..+.++|.-
T Consensus 340 V~kl~GIG~~t~--~~L~~lGI~TigDL~~~----~~~L~~~fG----~~~~~~l~~~a~G 390 (517)
T 3pzp_A 340 IRKVSGIGKVTE--KMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISLG 390 (517)
T ss_dssp GGGSTTCCHHHH--HHHHHTTCCBHHHHHHH----HHHHHHHSC----HHHHHHHHHHHTT
T ss_pred hhhhccccHHHH--HHHHHhCCCcHHHHHhh----HHHHHHHhC----hHHHHHHHHHHcC
Confidence 555668887655 99999999999999985 457888886 4568877777653
No 10
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=68.04 E-value=1 Score=43.01 Aligned_cols=40 Identities=38% Similarity=0.512 Sum_probs=31.5
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCC
Q 018335 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGP 296 (358)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~ 296 (358)
|-.|-+||+.-. ++|...||+|++|+.+ .++..|++.||.
T Consensus 180 v~~l~GiG~~~~--~~L~~~GI~Ti~dL~~---~~~~~L~~~fG~ 219 (356)
T 4dez_A 180 PDALWGVGPKTT--KKLAAMGITTVADLAV---TDPSVLTTAFGP 219 (356)
T ss_dssp GGGSTTCCHHHH--HHHHHTTCCSHHHHHT---SCHHHHHHHHCH
T ss_pred HHHHcCCchhHH--HHHHHcCCCeeccccc---CCHHHHHHHhCC
Confidence 344557777644 8999999999999864 588999999974
No 11
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=66.14 E-value=2.7 Score=41.52 Aligned_cols=51 Identities=27% Similarity=0.326 Sum_probs=37.7
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
|-.|-+||+. .-++|...||+|++|+.+ .+++.|++.||. +....+.+||.
T Consensus 236 v~~l~GIG~~--t~~~L~~lGI~TigdLa~---~~~~~L~~~fG~----~~g~~L~~~a~ 286 (420)
T 3osn_A 236 IKEIPGIGYK--TAKCLEALGINSVRDLQT---FSPKILEKELGI----SVAQRIQKLSF 286 (420)
T ss_dssp GGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHHH----HHHHHHHHHHT
T ss_pred HHHccCCCHH--HHHHHHHhCCCcHHHHhh---CCHHHHHHHhCc----hHHHHHHHHhc
Confidence 4444466654 559999999999999876 478999999973 34566667775
No 12
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=61.12 E-value=4.3 Score=40.30 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=37.8
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
|-+|-+||+.+ .++|+..||+|++|+..+ +..|++.|| .+.|..+..+|+
T Consensus 284 v~~l~GiG~~~--~~~L~~lGI~T~gdL~~~----~~~L~~~fG----~~~~~~l~~~a~ 333 (459)
T 1t94_A 284 IRKVSGIGKVT--EKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISL 333 (459)
T ss_dssp GGGCTTSCHHH--HHHHHHTTCCBHHHHHHT----HHHHHHHSC----HHHHHHHHHHHT
T ss_pred HHhcCCcCHHH--HHHHHHcCCCcHHHHHhh----HHHHHHHhC----hHhHHHHHHHHc
Confidence 66677788654 489999999999999874 357999986 345666667776
No 13
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=57.20 E-value=4 Score=39.34 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=37.4
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
|..|-+||+.- -++|...||+|++|+.+ .++..|++.||. +....+..+|+
T Consensus 181 v~~l~GiG~~~--~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~ 231 (362)
T 4f4y_A 181 IDEIPGIGSVL--ARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQ 231 (362)
T ss_dssp STTSTTCCSTT--HHHHHHTTCCBGGGGTT---SCHHHHHHHHCH----HHHHHHHHHHT
T ss_pred hhhccCCCHHH--HHHHHHcCCChHHHHhc---CCHHHHHHHhCh----HHHHHHHHHhc
Confidence 34444677664 48999999999999764 588999999972 35555666665
No 14
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=56.53 E-value=2.7 Score=39.99 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=40.3
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcccc
Q 018335 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV 314 (358)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCv 314 (358)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+..||.--+
T Consensus 180 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 233 (352)
T 1jx4_A 180 IADVPGIGN--ITAEKLKKLGINKLVDTLS---IEFDKLKGMIGE----AKAKYLISLARDEY 233 (352)
T ss_dssp GGGSTTCCH--HHHHHHHTTTCCBGGGGGS---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred CCcccccCH--HHHHHHHHcCCchHHHHHC---CCHHHHHHhcCh----hHHHHHHHHhCCCC
Confidence 556667775 4568999999999999875 688999999973 22666777776443
No 15
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=56.15 E-value=3.8 Score=40.45 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=32.6
Q ss_pred eeeeeeecccchhhhhhhh--cCCccHHHHHHhhccChHHHHHHhCC
Q 018335 252 VWRLEKIGKDGAFHKKLSA--AGIKTVQDFLKLSIVEPQRLRKILGP 296 (358)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~--~~I~tV~dFLkl~~~d~~kLr~iLg~ 296 (358)
|-.|-+||+ ..-++|.. .||+|++|+.++. +++.|++.||.
T Consensus 243 v~~l~GiG~--~~~~~L~~~~~GI~ti~dL~~~~--~~~~L~~~fG~ 285 (434)
T 2aq4_A 243 LDDLPGVGH--STLSRLESTFDSPHSLNDLRKRY--TLDALKASVGS 285 (434)
T ss_dssp GGGSTTCCH--HHHHHHHHHTTCCCSHHHHHHHC--CHHHHHHHHCS
T ss_pred cccccCcCH--HHHHHHHHhcCCceEHHHHHhcC--CHHHHHHHhCH
Confidence 445556665 45589999 8999999999875 78899999984
No 16
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=55.19 E-value=3.1 Score=39.65 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=40.7
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccC
Q 018335 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (358)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl 315 (358)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+.
T Consensus 181 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d~ 235 (354)
T 3bq0_A 181 IDEIPGIGS--VLARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQNKYS 235 (354)
T ss_dssp STTSTTCCH--HHHHHHTTTTCCBGGGGGG---SCHHHHHHHHCH----HHHHHHHHHHTTCCC
T ss_pred cccccCcCH--HHHHHHHHcCCccHHHHhc---CCHHHHHHHHCH----HHHHHHHHHhCCCCC
Confidence 445556675 4569999999999999875 688999999973 226667778874443
No 17
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=54.37 E-value=7.6 Score=36.67 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=42.7
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
+..-|.+|+.+-+ ++|.++||.|++||.. .+++++.++| +++++.-+.+.+-|.
T Consensus 158 pL~Qlp~i~~~~~--~~l~~~~i~s~~~l~~---~~~~e~~~ll--~~~~~~~~~v~~~~~ 211 (328)
T 3im1_A 158 PLRQIPHFNNKIL--EKCKEINVETVYDIMA---LEDEERDEIL--TLTDSQLAQVAAFVN 211 (328)
T ss_dssp GGGGSTTCCHHHH--HHHHHTTCCSHHHHHH---SCHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHH--HHHHhCCCCCHHHHhc---CCHHHHHhHh--CCCHHHHHHHHHHHH
Confidence 3456778877644 7799999999999865 4899999998 688888888777664
No 18
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=45.69 E-value=15 Score=28.25 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=24.3
Q ss_pred hhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHH
Q 018335 266 KKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVT 306 (358)
Q Consensus 266 k~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~ 306 (358)
.-|..+||+||+|+++. +++.|.++= |+-.|.-+.+
T Consensus 22 NcLkragI~Tv~dL~~~---s~~dLlki~--n~G~kSl~EI 57 (73)
T 1z3e_B 22 NCLKRAGINTVQELANK---TEEDMMKVR--NLGRKSLEEV 57 (73)
T ss_dssp HHHHHTTCCBHHHHHTS---CHHHHHTST--TCCHHHHHHH
T ss_pred HHHHHcCCCcHHHHHcC---CHHHHHHcC--CCCHHHHHHH
Confidence 56889999999998874 566677663 3334444433
No 19
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=45.46 E-value=3.3 Score=42.28 Aligned_cols=51 Identities=29% Similarity=0.449 Sum_probs=36.0
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 252 VwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
|..|-+||+. .-++|...||+|++|+.+ .++..|++.||.. ....+..+|.
T Consensus 317 V~~l~GIG~~--t~~kL~~lGI~TigDLa~---~~~~~L~~~fG~~----~g~~L~~~a~ 367 (504)
T 3gqc_A 317 VTNLPGVGHS--MESKLASLGIKTCGDLQY---MTMAKLQKEFGPK----TGQMLYRFCR 367 (504)
T ss_dssp GGGSTTCCHH--HHHHHHHTTCCBHHHHTT---SCHHHHHHHHCHH----HHHHHHHHTT
T ss_pred hhHhhCcCHH--HHHHHHHcCCCcHHHHHh---ccHHHHHHhhChh----HHHHHHHHhc
Confidence 4455566664 448999999999999864 5889999999742 2333445554
No 20
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=42.19 E-value=20 Score=28.56 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=25.3
Q ss_pred hhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHH
Q 018335 266 KKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQ 308 (358)
Q Consensus 266 k~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~ 308 (358)
.-|..+||+||+|++.. +++.|.++= |+-.|.-+.+.+
T Consensus 25 NcLkragI~Tv~dL~~~---se~dLlki~--n~G~KSl~EI~~ 62 (86)
T 3k4g_A 25 NCLXAEAIHYIGDLVQR---TEVELLXTP--NLGXXSLTEIXD 62 (86)
T ss_dssp HHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHhC---CHHHHhhcc--ccCcccHHHHHH
Confidence 56889999999998875 555566552 344555555443
No 21
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=42.16 E-value=19 Score=34.13 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=42.4
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 251 eVwRLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
+..-|.+|+.+ .-++|.++||.|++||.. .+++++..+|| +++..-+.+.+-+.
T Consensus 162 pL~Qlp~i~~~--~~~~l~~~~i~s~~~l~~---~~~~e~~~ll~--l~~~~~~~i~~~~~ 215 (339)
T 2q0z_X 162 YLKQLPHFTSE--HIKRCTDKGVESVFDIME---MEDEERNALLQ--LTDSQIADVARFCN 215 (339)
T ss_dssp GGGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHC--CCHHHHHHHHHHHT
T ss_pred ceecCCCCCHH--HHHHHHhcCCCCHHHHHh---CCHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 46677888775 348899999999999875 78999999994 88877777766554
No 22
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=32.14 E-value=19 Score=28.25 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=24.5
Q ss_pred hhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHH
Q 018335 265 HKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTM 307 (358)
Q Consensus 265 hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v 307 (358)
..-|..+||+||+|++.. +++.|.++= |+-.|.-+.+.
T Consensus 28 ~NcLk~agI~Tv~dL~~~---se~dLlki~--n~G~kSl~EI~ 65 (79)
T 3gfk_B 28 YNCLKRAGINTVQELANK---TEEDMMKVR--NLGRKSLEEVK 65 (79)
T ss_dssp HHHHHHTTCCBHHHHTTC---CHHHHTTST--TCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHhC---CHHHHHHcC--CCCHhHHHHHH
Confidence 367889999999998764 555555552 33444444443
No 23
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=31.17 E-value=12 Score=30.10 Aligned_cols=26 Identities=38% Similarity=0.448 Sum_probs=18.7
Q ss_pred eeeecccchhhhhhhhcCCccHHHHHHh
Q 018335 255 LEKIGKDGAFHKKLSAAGIKTVQDFLKL 282 (358)
Q Consensus 255 Le~IgKdG~~hk~L~~~~I~tV~dFLkl 282 (358)
|-+||+.-. +.|.+.||+||+||..+
T Consensus 9 LPNig~~~e--~~L~~~GI~t~~~Lr~~ 34 (93)
T 3mab_A 9 LPNIGKVLE--QDLIKAGIKTPVELKDV 34 (93)
T ss_dssp STTCCHHHH--HHHHHTTCCSHHHHHHH
T ss_pred CCCCCHHHH--HHHHHcCCCCHHHHHhC
Confidence 444555433 88999999999988764
No 24
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=30.72 E-value=16 Score=36.11 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=36.0
Q ss_pred eeeeeeecccchhhhh-hhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhcccc
Q 018335 252 VWRLEKIGKDGAFHKK-LSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV 314 (358)
Q Consensus 252 VwRLe~IgKdG~~hk~-L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCv 314 (358)
|-.|-+||+. .-++ |...||+|++|+.. .++..|++.|| .+.-..+.+||+--+
T Consensus 255 v~~l~GiG~~--~~~~lL~~lGI~TigdLa~---~~~~~L~~~fG----~~~g~~L~~~a~G~d 309 (435)
T 4ecq_A 255 IRKIRSLGGK--LGASVIEILGIEYMGELTQ---FTESQLQSHFG----EKNGSWLYAMCRGIE 309 (435)
T ss_dssp GGGSTTCSSH--HHHHHHHHHTCCBGGGGGG---SCHHHHHHHHC----HHHHHHHHHHTTTCC
T ss_pred HHHhcCCCHH--HHHHHHHHcCCCcHHHHhh---CCHHHHHHHhC----ccHHHHHHHHhhCCC
Confidence 4444566643 3244 89999999999875 58899999997 234444556665433
No 25
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=28.79 E-value=32 Score=26.11 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=40.0
Q ss_pred cchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhccccC
Q 018335 261 DGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (358)
Q Consensus 261 dG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAktCvl 315 (358)
+-..-++|.++|++||++. .+.+++.|-.|- |+|...=+.+.+-|+..+.
T Consensus 15 ~e~~a~~L~~~Gf~tve~v---A~~~~~eL~~I~--G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 15 DEDFATVLVEEGFSTLEEL---AYVPMKELLEIE--GLDEPTVEALRERAKNALA 64 (70)
T ss_dssp CHHHHHHHHHTTCCCHHHH---HHSCHHHHTTST--TCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCcCcHHHH---HcCCHHHHhhcc--CCCHHHHHHHHHHHHHHHH
Confidence 3445689999999999965 456888888886 7899999999998887653
No 26
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=27.75 E-value=15 Score=29.46 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=19.3
Q ss_pred eeeecccchhhhhhhhcCCccHHHHHHh
Q 018335 255 LEKIGKDGAFHKKLSAAGIKTVQDFLKL 282 (358)
Q Consensus 255 Le~IgKdG~~hk~L~~~~I~tV~dFLkl 282 (358)
|-+||+. .-+.|.+.||+||+||..+
T Consensus 9 LPNiG~~--~e~~L~~vGI~s~e~L~~~ 34 (93)
T 3bqs_A 9 LPNIGKV--LEQDLIKAGIKTPVELKDV 34 (93)
T ss_dssp STTCCHH--HHHHHHHTTCCSHHHHHHH
T ss_pred CCCCCHH--HHHHHHHcCCCCHHHHHhC
Confidence 4455554 3388999999999998765
No 27
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=26.59 E-value=36 Score=27.74 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.2
Q ss_pred hhhhhhcCCccHHHHHHh
Q 018335 265 HKKLSAAGIKTVQDFLKL 282 (358)
Q Consensus 265 hk~L~~~~I~tV~dFLkl 282 (358)
..-|+.+||+||+|+++.
T Consensus 36 ~NcLkragI~Tv~dL~~~ 53 (98)
T 1coo_A 36 ANCLKAEAIHYIGDLVQR 53 (98)
T ss_dssp HHHHHTTTCCBHHHHHTS
T ss_pred HHHHHHcCCCcHHHHHhC
Confidence 367889999999998875
No 28
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=24.55 E-value=35 Score=34.81 Aligned_cols=48 Identities=27% Similarity=0.556 Sum_probs=36.4
Q ss_pred eeeeecccchhhhhhhhcCCccHHHHHHhhccChHHHHHHhCCCCChhhHHHHHHhhc
Q 018335 254 RLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (358)
Q Consensus 254 RLe~IgKdG~~hk~L~~~~I~tV~dFLkl~~~d~~kLr~iLg~~ms~k~We~~v~HAk 311 (358)
.|.+|+.. ..++|.++||.|++|+. .|+++|.+++| .+.-+.+++-|+
T Consensus 661 qlp~i~~~--rar~L~~~g~~s~~~l~----~~~~~l~~~l~----~~~~~~i~~~~~ 708 (715)
T 2va8_A 661 QISGVGRK--RARLLYNNGIKELGDVV----MNPDKVKNLLG----QKLGEKVVQEAA 708 (715)
T ss_dssp TSTTCCHH--HHHHHHHTTCCSHHHHH----HCHHHHHHHHC----HHHHHHHHHHHH
T ss_pred hCCCCCHH--HHHHHHHcCCCCHHHHh----CCHHHHHHHhC----hhHHHHHHHHHH
Confidence 44555544 44788999999999966 68999999995 777777777554
No 29
>2f8v_T Telethonin; sarcomere, titin, Z1Z2, contractIle protein-CONT protein complex; 2.75A {Homo sapiens}
Probab=24.52 E-value=16 Score=32.48 Aligned_cols=38 Identities=32% Similarity=0.474 Sum_probs=15.7
Q ss_pred ccCCCccccc--cC--CCCceEEEEccCCCCCcccCCceeec
Q 018335 71 LTRSSSLRIQ--AL--EPSSLKLIFSQKLSLPIFTGSKITDV 108 (358)
Q Consensus 71 ~~rs~~~~i~--~~--~~~~~~L~F~n~l~~pifT~~kI~a~ 108 (358)
..|+|...|. .. .-+.|||=|.|-|++||||-.++.+.
T Consensus 61 VQr~P~qvmrMG~~g~~lqEYqLPY~~~LPlPIFtPak~~~~ 102 (167)
T 2f8v_T 61 VQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGAT 102 (167)
T ss_dssp EECCTTTEEEEEETTSCCEEEESSCCCC--------------
T ss_pred HHhChHHHhhhhhccccchhhccchhccCCccccchhhcCCc
Confidence 4677765542 22 23469999999999999999988743
No 30
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_G
Probab=22.32 E-value=87 Score=29.27 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=38.9
Q ss_pred hhhhhcCCccHHHHHHhhc--cChHHHHHHhCCC--CChhhHHHHHHhhcccc
Q 018335 266 KKLSAAGIKTVQDFLKLSI--VEPQRLRKILGPG--MSEKMWEVTMQHARKCV 314 (358)
Q Consensus 266 k~L~~~~I~tV~dFLkl~~--~d~~kLr~iLg~~--ms~k~We~~v~HAktCv 314 (358)
++|++.||.|+++...-+. .|+++|.++++.. =|+.+-+++-+-.++|-
T Consensus 107 erLa~~gift~qeL~eeL~sl~dE~kLlkl~~~R~~GSDlD~~kl~ekv~~sL 159 (234)
T 3euh_C 107 ERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSL 159 (234)
T ss_dssp GGGGGTTEEEHHHHHHHHHHHSCHHHHHHHHSSSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcccHHHHHHHHHHhhCHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 7899999999999887663 5899999998622 26777778888887774
No 31
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=21.99 E-value=58 Score=20.74 Aligned_cols=18 Identities=44% Similarity=0.704 Sum_probs=10.7
Q ss_pred ccCCCCCCCCCCCccccC
Q 018335 4 KRFLNGSDPEEPPEKRTR 21 (358)
Q Consensus 4 kr~~~~~~~~~~~~~r~~ 21 (358)
||.-+-.|+|.|..||+|
T Consensus 9 krkrewdddddppkkrrr 26 (28)
T 3ukx_C 9 KRKREWDDDDDPPKKRRR 26 (28)
T ss_dssp CCCCCCCCSSSCCSCCCC
T ss_pred HhhcccccCCCchhhhhc
Confidence 444444466777777764
Done!