BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018336
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD 213
V V YD +WT NM D RS A LNG + GG D T LSS AY++ +
Sbjct: 76 VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFD-GSTGLSSVEAYNIKSN 134
Query: 214 EWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKR-AENAW 272
EW +A M R V+G + V GY + + E Y T EW AE +
Sbjct: 135 EWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCL-STVECYNATTNEWTYIAEMST 193
Query: 273 KLSQCPRSNVGVGREGKLF 291
+ RS GVG L
Sbjct: 194 R-----RSGAGVGVLNNLL 207
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 140 LVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENK 199
+VV+GG P + + V YDF RW + +P R + G V GG +
Sbjct: 18 MVVVGGQAPKA---IRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFN-GS 73
Query: 200 TALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQ 259
+ + +YD +KD+WT +A M R A V+ + V G+ G+ S E+Y
Sbjct: 74 LRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS-TGL--SSVEAYN 130
Query: 260 LGTGEW 265
+ + EW
Sbjct: 131 IKSNEW 136
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
Query: 140 LVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENK 199
L +GG+D AS +S V Y+ TT WT M RS G LN + GGHD
Sbjct: 158 LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD-GP 216
Query: 200 TALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQ 259
S YD + W ++A M R + +VV G + S E Y
Sbjct: 217 LVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGG---DDGSCNLASVEYYN 273
Query: 260 LGTGEW 265
T +W
Sbjct: 274 PTTDKW 279
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 157 VFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWT 216
V VYD TT W + +M R +NG + + GG D+ L+S Y+ D+WT
Sbjct: 222 VEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGG-DDGSCNLASVEYYNPTTDKWT 280
Query: 217 ELAR-MTQERDECEAVVI 233
++ M+ R VI
Sbjct: 281 VVSSCMSTGRSYAGVTVI 298
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 107 FDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR 166
+DP W LG + G L + G + +GG+D + ++ V YD T
Sbjct: 133 YDPNIDQWSMLGDMQTAREGAGLVV----ASGVIYCLGGYD--GLNILNSVEKYDPHTGH 186
Query: 167 WTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERD 226
WT M RS LN + + GG D LSS AY++ D WT + MT R
Sbjct: 187 WTNVTPMATKRSGAGVALLNDHIYVVGGFD-GTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245
Query: 227 ECEAVVIGSEFWVVSGYK 244
A V+ + ++GY
Sbjct: 246 YVGATVLRGRLYAIAGYD 263
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 107 FDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR 166
+DP + W + P+ +G VA + V+GG+D ++ +S V Y+ T
Sbjct: 180 YDPHTGHWTNVTPMATKRSG----AGVALLNDHIYVVGGFDGTAH--LSSVEAYNIRTDS 233
Query: 167 WTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERD 226
WT +M R + A L GR+ G+D N + LSS YD I D W + M +R
Sbjct: 234 WTTVTSMTTPRCYVGATVLRGRLYAIAGYDGN-SLLSSIECYDPIIDSWEVVTSMGTQR- 291
Query: 227 ECEAVV 232
C+A V
Sbjct: 292 -CDAGV 296
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 140 LVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENK 199
L+V+GG+ + SP+ V YD T+ W+ ++ R + A+ L+ R+ + GG+D +
Sbjct: 17 LLVVGGFG-SQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYD-GR 74
Query: 200 TALSSAWAYDLIKDE---WTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAE 256
+ LSS D DE W +A M R A +G +V G+ R+ S E
Sbjct: 75 SRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRR---HTSME 131
Query: 257 SYQLGTGEWKRAENAWKLSQCPRSNVG-VGREGKLFC 292
Y +W + Q R G V G ++C
Sbjct: 132 RYDPNIDQWSMLGDM----QTAREGAGLVVASGVIYC 164
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 19/165 (11%)
Query: 107 FDPVSLTWDRLGPVPE---YPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
+DP + W L + Y A + L ++ V+GG+D S +S V D+T
Sbjct: 36 YDPKTQEWSFLPSITRKRRYVASVSL-------HDRIYVIGGYD--GRSRLSSVECLDYT 86
Query: 164 TRR---WTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELAR 220
W M R A L + ++GG D ++ +S YD D+W+ L
Sbjct: 87 ADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRH-TSMERYDPNIDQWSMLGD 145
Query: 221 MTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEW 265
M R+ VV + + GY + I + S E Y TG W
Sbjct: 146 MQTAREGAGLVVASGVIYCLGGY--DGLNILN-SVEKYDPHTGHW 187
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 174 PDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI 233
P R+ A E+ +++ GG ++ + YD EW+ L +T++R +V +
Sbjct: 5 PRTRARLGANEV---LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL 61
Query: 234 GSEFWVVSGYK 244
+V+ GY
Sbjct: 62 HDRIYVIGGYD 72
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 6/140 (4%)
Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
V +DPV+ W + +P G V S G + +GG + VF+Y+
Sbjct: 129 VLCYDPVAAKWSEVKNLPIKVYG----HNVISHNGMIYCLGG-KTDDKKCTNRVFIYNPK 183
Query: 164 TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ 223
W M RS F G+++IAGG E+ + +S A+DL ++W + Q
Sbjct: 184 KGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLS-ASVEAFDLKTNKWEVMTEFPQ 242
Query: 224 ERDECEAVVIGSEFWVVSGY 243
ER V + + + G+
Sbjct: 243 ERSSISLVSLAGSLYAIGGF 262
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 7/160 (4%)
Query: 107 FDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR 166
D VS W L P+P + LF + K+ V+ G D + + + V YD +
Sbjct: 83 LDNVSSEWVGLPPLP---SARCLF-GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAK 138
Query: 167 WTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERD 226
W+ KN+P NG + GG ++K + + Y+ K +W +LA M R
Sbjct: 139 WSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR- 197
Query: 227 ECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWK 266
V I V++G TE S E++ L T +W+
Sbjct: 198 SMFGVAIHKGKIVIAGGVTEDG--LSASVEAFDLKTNKWE 235
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 133 VASSQGKLVVMGGW---DPASYSPV-SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGR 188
+ + Q ++ V+GG + P+ S+ F D + W +P R F GE++ +
Sbjct: 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDK 111
Query: 189 VIIAGGHD-ENKTALSSAWAYDLIKDEWTELARM 221
+ + G D + + +L S YD + +W+E+ +
Sbjct: 112 IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL 145
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 6/142 (4%)
Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
V +D +S W P+P G S LV + G + ++ + VYD
Sbjct: 119 VMCYDRLSFKWGESDPLPYVVYG-----HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPK 173
Query: 164 TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ 223
W M RS F A +GR+I+A G + SSA Y + ++W Q
Sbjct: 174 KFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLT-SSAEVYSITDNKWAPFEAFPQ 232
Query: 224 ERDECEAVVIGSEFWVVSGYKT 245
ER V + + + G+ T
Sbjct: 233 ERSSLSLVSLVGTLYAIGGFAT 254
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 40/116 (34%), Gaps = 3/116 (2%)
Query: 154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD 213
+ V YD + +W +P V + GG ++ L+ YD K
Sbjct: 116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175
Query: 214 EWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAE 269
EW ELA M R A V V +G SAE Y + +W E
Sbjct: 176 EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTG---LTSSAEVYSITDNKWAPFE 228
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 7/136 (5%)
Query: 134 ASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAG 193
+++GK+ GG + + S + YD T W +M R E NG + + G
Sbjct: 98 CAAEGKIYTSGGSEVGN-SALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCG 156
Query: 194 GHDENKTA---LSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGI 250
G N + L+S YD + WTEL M + R V + + + V G + G+
Sbjct: 157 GSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGG-QNGLGGL 215
Query: 251 FDESAESYQLGTGEWK 266
++ E Y + EWK
Sbjct: 216 --DNVEYYDIKLNEWK 229
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 37/114 (32%), Gaps = 1/114 (0%)
Query: 153 PVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIK 212
P+ + Y+ W P R AA G++ +GG + +AL YD
Sbjct: 68 PIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRT 127
Query: 213 DEWTELARMTQERDECEAVVIGSEFWVVSG-YKTERQGIFDESAESYQLGTGEW 265
+ W M +R V +V G G S E Y T W
Sbjct: 128 ESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 159 VYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTEL 218
VYD T WT M + R + ++ GG + L + YD+ +EW +
Sbjct: 173 VYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQN-GLGGLDNVEYYDIKLNEWKMV 231
Query: 219 ARMTQERDECEAVVIGSEFWVVSGYK 244
+ M + + +GS +V++G++
Sbjct: 232 SPMPWKGVTVKCAAVGSIVYVLAGFQ 257
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 13/170 (7%)
Query: 100 LSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWD--PASYSPVSHV 157
LSY + ++P + +W RL + +GL C V G L +GG + P + S +
Sbjct: 32 LSY-LEAYNPSNGSWLRLADLQVPRSGLA-GCVVG---GLLYAVGGRNNSPDGNTDSSAL 86
Query: 158 FVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTE 217
Y+ T +W+ +M R+ G ++G + GG SS Y+ +DEW
Sbjct: 87 DCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGG-SHGCIHHSSVERYEPERDEWHL 145
Query: 218 LARMTQERDECEAVVIGSEFWVVSGYK-TERQGIFDESAESYQLGTGEWK 266
+A M R V+ + V G+ T R SAE Y EW+
Sbjct: 146 VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL----NSAECYYPERNEWR 191
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 187 GRVI-IAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKT 245
GR+I AGG+ + +LS AY+ W LA + R V+G + V G
Sbjct: 18 GRLIYTAGGY--FRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 75
Query: 246 ERQGIFDESA-ESYQLGTGEWKRAENAWKLSQCPRSNVGVG 285
G D SA + Y T +W + PR+ +GVG
Sbjct: 76 SPDGNTDSSALDCYNPMTNQWSPCASM----SVPRNRIGVG 112
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 69/180 (38%), Gaps = 16/180 (8%)
Query: 93 GELKPMGLSYG------VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGW 146
G + +G S+G V ++P W + P+ G+ VA L +GG+
Sbjct: 116 GHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGV----GVAVLNRLLYAVGGF 171
Query: 147 DPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAW 206
D + ++ Y W M RS L+ + AGG+D + L+S
Sbjct: 172 DGTNR--LNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYD-GQDQLNSVE 228
Query: 207 AYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWK 266
YD+ + WT +A M R V + +V+ GY F +S E Y + W
Sbjct: 229 RYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGH---TFLDSVECYDPDSDTWS 285
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 13/170 (7%)
Query: 100 LSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWD--PASYSPVSHV 157
LSY + ++P + +W RL + +GL C V G L +GG + P + S +
Sbjct: 31 LSY-LEAYNPSNGSWLRLADLQVPRSGLA-GCVVG---GLLYAVGGRNNSPDGNTDSSAL 85
Query: 158 FVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTE 217
Y+ T +W+ +M R+ G ++G + GG SS Y+ +DEW
Sbjct: 86 DCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGG-SHGCIHHSSVERYEPERDEWHL 144
Query: 218 LARMTQERDECEAVVIGSEFWVVSGYK-TERQGIFDESAESYQLGTGEWK 266
+A M R V+ + V G+ T R SAE Y EW+
Sbjct: 145 VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL----NSAECYYPERNEWR 190
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 187 GRVI-IAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKT 245
GR+I AGG+ + +LS AY+ W LA + R V+G + V G
Sbjct: 17 GRLIYTAGGY--FRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 74
Query: 246 ERQGIFDESA-ESYQLGTGEWKRAENAWKLSQCPRSNVGVG 285
G D SA + Y T +W + PR+ +GVG
Sbjct: 75 SPDGNTDSSALDCYNPMTNQWSPCASM----SVPRNRIGVG 111
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 69/180 (38%), Gaps = 16/180 (8%)
Query: 93 GELKPMGLSYG------VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGW 146
G + +G S+G V ++P W + P+ G+ VA L +GG+
Sbjct: 115 GHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGV----GVAVLNRLLYAVGGF 170
Query: 147 DPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAW 206
D + ++ Y W M RS L+ + AGG+D + L+S
Sbjct: 171 DGTNR--LNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYD-GQDQLNSVE 227
Query: 207 AYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWK 266
YD+ + WT +A M R V + +V+ GY F +S E Y + W
Sbjct: 228 RYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGH---TFLDSVECYDPDSDTWS 284
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 290 LFCWAETEAAVQF----GTCRVELGGCTLVTGSGY-QGGPQEFYVVEGRNGKFRKFDVPA 344
+ W++ EA V F G C VE G L + Y QGGP FY +E N K + F+ P
Sbjct: 754 MLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDPP 813
Query: 345 EY 346
+
Sbjct: 814 NH 815
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 289 KLFCWAETEAAVQF----GTCRVELGGCTLVTGSGY-QGGPQEFYVVEGRNGKFRKFDVP 343
+ W++ EA V F G C VE G L + Y QGGP FY +E N K + F+ P
Sbjct: 314 NMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDP 373
Query: 344 AEY 346
+
Sbjct: 374 PNH 376
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 289 KLFCWAETEAAVQF----GTCRVELGGCTLVTGSGY-QGGPQEFYVVEGRNGKFRKFDVP 343
+ W++ EA V F G C VE G L + Y QGGP FY +E N K + F+ P
Sbjct: 395 NMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDP 454
Query: 344 AEY 346
+
Sbjct: 455 PNH 457
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 13/170 (7%)
Query: 100 LSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWD--PASYSPVSHV 157
LSY + ++P TW RL + +GL C V G L +GG + P + S +
Sbjct: 39 LSY-LEAYNPSDGTWLRLADLQVPRSGLA-GCVVG---GLLYAVGGRNNSPDGNTDSSAL 93
Query: 158 FVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTE 217
Y+ T +W+ M R+ G ++G + GG +S Y+ +DEW
Sbjct: 94 DCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG-SHGCIHHNSVERYEPERDEWHL 152
Query: 218 LARMTQERDECEAVVIGSEFWVVSGYK-TERQGIFDESAESYQLGTGEWK 266
+A M R V+ + V G+ T R SAE Y EW+
Sbjct: 153 VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL----NSAECYYPERNEWR 198
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 73/198 (36%), Gaps = 20/198 (10%)
Query: 93 GELKPMGLSYG------VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGW 146
G + +G S+G V ++P W + P+ G+ VA L +GG+
Sbjct: 123 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV----GVAVLNRLLYAVGGF 178
Query: 147 DPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAW 206
D + ++ Y W M RS L+ + AGG+D + L+S
Sbjct: 179 DGTNR--LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYD-GQDQLNSVE 235
Query: 207 AYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWK 266
YD+ + WT +A M R V +V+ GY F +S E Y T W
Sbjct: 236 RYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH---TFLDSVECYDPDTDTWS 292
Query: 267 RAENAWKLSQCPRSNVGV 284
RS VGV
Sbjct: 293 EVTRM----TSGRSGVGV 306
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 187 GRVI-IAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKT 245
GR+I AGG+ + +LS AY+ W LA + R V+G + V G
Sbjct: 25 GRLIYTAGGY--FRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 82
Query: 246 ERQGIFDESA-ESYQLGTGEWKRAENAWKLSQCPRSNVGVGR-EGKLFCWAETEAAVQFG 303
G D SA + Y T +W PR+ +GVG +G ++ + +
Sbjct: 83 SPDGNTDSSALDCYNPMTNQWSPCAPM----SVPRNRIGVGVIDGHIYAVGGSHGCIHHN 138
Query: 304 T 304
+
Sbjct: 139 S 139
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 13/170 (7%)
Query: 100 LSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWD--PASYSPVSHV 157
LSY + ++P TW RL + +GL C V G L +GG + P + S +
Sbjct: 38 LSY-LEAYNPSDGTWLRLADLQVPRSGLA-GCVVG---GLLYAVGGRNNSPDGNTDSSAL 92
Query: 158 FVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTE 217
Y+ T +W+ M R+ G ++G + GG +S Y+ +DEW
Sbjct: 93 DCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG-SHGCIHHNSVERYEPERDEWHL 151
Query: 218 LARMTQERDECEAVVIGSEFWVVSGYK-TERQGIFDESAESYQLGTGEWK 266
+A M R V+ + V G+ T R SAE Y EW+
Sbjct: 152 VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL----NSAECYYPERNEWR 197
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 73/198 (36%), Gaps = 20/198 (10%)
Query: 93 GELKPMGLSYG------VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGW 146
G + +G S+G V ++P W + P+ G+ VA L +GG+
Sbjct: 122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV----GVAVLNRLLYAVGGF 177
Query: 147 DPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAW 206
D + ++ Y W M RS L+ + AGG+D + L+S
Sbjct: 178 DGTNR--LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYD-GQDQLNSVE 234
Query: 207 AYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWK 266
YD+ + WT +A M R V +V+ GY F +S E Y T W
Sbjct: 235 RYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH---TFLDSVECYDPDTDTWS 291
Query: 267 RAENAWKLSQCPRSNVGV 284
RS VGV
Sbjct: 292 EVTRM----TSGRSGVGV 305
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 187 GRVI-IAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKT 245
GR+I AGG+ + +LS AY+ W LA + R V+G + V G
Sbjct: 24 GRLIYTAGGY--FRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 81
Query: 246 ERQGIFDESA-ESYQLGTGEWKRAENAWKLSQCPRSNVGVGR-EGKLFCWAETEAAVQFG 303
G D SA + Y T +W PR+ +GVG +G ++ + +
Sbjct: 82 SPDGNTDSSALDCYNPMTNQWSPCAPM----SVPRNRIGVGVIDGHIYAVGGSHGCIHHN 137
Query: 304 T 304
+
Sbjct: 138 S 138
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERD-ECEAVVIGSEFWVVSGYK 244
NG++++ GG+D KT+L YD D W M R + A + + + G
Sbjct: 236 NGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG-- 288
Query: 245 TERQGIFDESAESYQLGTGEWKRAENA 271
+ G+F+++ E Y + W NA
Sbjct: 289 SHSGGVFEKNGEVYSPSSKTWTSLPNA 315
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 140 LVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENK 199
+ GG+D ++ V YD T WT RS GR+ + GG+D
Sbjct: 218 IYAAGGYD--GQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYD-GH 274
Query: 200 TALSSAWAYDLIKDEWTELARMTQER 225
T L S YD D W+E+ R T R
Sbjct: 275 TFLDSVECYDPDTDTWSEVTRXTSGR 300
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 187 GRVI-IAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKT 245
GR+I AGG+ + +LS AY+ W LA + R V+G + V G
Sbjct: 24 GRLIYTAGGY--FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 81
Query: 246 ERQGIFDESA-ESYQLGTGEWKRAENAWKLSQCPRSNVGVGR-EGKLFCWAETEAAVQFG 303
G D SA + Y T +W PR+ +GVG +G ++ + +
Sbjct: 82 SPDGNTDSSALDCYNPXTNQWSPC----APXSVPRNRIGVGVIDGHIYAVGGSHGCIHHN 137
Query: 304 T 304
+
Sbjct: 138 S 138
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 185 LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYK 244
L+ + AGG+D + L+S YD+ + WT +A R V +V+ GY
Sbjct: 214 LHNCIYAAGGYD-GQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYD 272
Query: 245 TERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV 284
F +S E Y T W RS VGV
Sbjct: 273 GH---TFLDSVECYDPDTDTWSEVTRX----TSGRSGVGV 305
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERD-ECEAVVIGSEFWVVSGYK 244
NG++++ GG+D KT+L YD D W M R + A + + + G
Sbjct: 236 NGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG-- 288
Query: 245 TERQGIFDESAESYQLGTGEWKRAENA 271
+ G+F+++ E Y + W NA
Sbjct: 289 SGSGGVFEKNGEVYSPSSKTWTSLPNA 315
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERD-ECEAVVIGSEFWVVSGYK 244
NG++++ GG+D KT+L YD D W M R + A + + + G
Sbjct: 236 NGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG-- 288
Query: 245 TERQGIFDESAESYQLGTGEWKRAENA 271
+ G+F+++ E Y + W NA
Sbjct: 289 SFSGGVFEKNGEVYSPSSKTWTSLPNA 315
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERD-ECEAVVIGSEFWVVSGYK 244
NG++++ GG+D KT+L YD D W M R + A + + + G
Sbjct: 258 NGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG-- 310
Query: 245 TERQGIFDESAESYQLGTGEWKRAENA 271
+ G+F+++ E Y + W NA
Sbjct: 311 SFSGGVFEKNGEVYSPSSKTWTSLPNA 337
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERD-ECEAVVIGSEFWVVSGYK 244
NG++++ GG+D KT+L YD D W M R + A + + + G
Sbjct: 236 NGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG-- 288
Query: 245 TERQGIFDESAESYQLGTGEWKRAENA 271
+ G+F+++ E Y + W NA
Sbjct: 289 SWSGGVFEKNGEVYSPSSKTWTSLPNA 315
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERD-ECEAVVIGSEFWVVSGYK 244
NG++++ GG+D KT+L YD D W M R + A + + + G
Sbjct: 253 NGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG-- 305
Query: 245 TERQGIFDESAESYQLGTGEWKRAENA 271
+ G+F+++ E Y + W NA
Sbjct: 306 SWSGGVFEKNGEVYSPSSKTWTSLPNA 332
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERD-ECEAVVIGSEFWVVSGYK 244
NG++++ GG+D KT+L YD D W M R + A + + + G
Sbjct: 236 NGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG-- 288
Query: 245 TERQGIFDESAESYQLGTGEWKRAENA 271
+ G+F+++ E Y + W NA
Sbjct: 289 SWSGGVFEKNGEVYSPSSKTWTSLPNA 315
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 290 LFCWAETEAAVQF----GTCRVELGG----CTLVTGSGYQGGPQEFYVVEGRNGKFRKFD 341
L W++ EA V F G C VE G C V GGP FY +E N K + F+
Sbjct: 443 LLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYS---MGGPNRFYFLEAYNAKSKSFE 499
Query: 342 VPAEY 346
P +
Sbjct: 500 DPPNH 504
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 289 KLFCWAETEAAVQF----GTCRVELGG----CTLVTGSGYQGGPQEFYVVEGRNGKFRKF 340
L W++ EA V F G C VE G C V GGP FY +E N K + F
Sbjct: 396 NLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYS---MGGPNRFYFLEAYNAKSKSF 452
Query: 341 DVPAEY 346
+ P +
Sbjct: 453 EDPPNH 458
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 135 SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-NGRVIIAG 193
S +L+++GG A + +S +++D TR W+ K++ R +A L +G V+I G
Sbjct: 449 SRNNQLLLIGGRK-APHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILG 507
Query: 194 GHDENKTALSSAWAYDLIKD 213
G E L ++ KD
Sbjct: 508 GVTEGPAMLLYNVTEEIFKD 527
>pdb|2FJS|A Chain A, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|B Chain B, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|C Chain C, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2E86|A Chain A, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
pdb|2E86|B Chain B, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
pdb|2E86|C Chain C, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
Length = 337
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 164 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 198
>pdb|3H4H|A Chain A, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|B Chain B, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|C Chain C, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 335
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 163 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 197
>pdb|1L9R|A Chain A, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|B Chain B, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|C Chain C, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 164 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 198
>pdb|2AFN|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|1AQ8|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AS6|A Chain A, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|B Chain B, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|C Chain C, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS7|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS8|A Chain A, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|B Chain B, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|C Chain C, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
Length = 343
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 170 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 204
>pdb|1SJM|A Chain A, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|B Chain B, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|C Chain C, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SNR|A Chain A, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|B Chain B, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|C Chain C, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|2P80|A Chain A, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|B Chain B, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|C Chain C, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2PP7|A Chain A, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|B Chain B, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|C Chain C, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP8|A Chain A, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|B Chain B, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|C Chain C, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP9|A Chain A, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|B Chain B, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|C Chain C, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PPA|A Chain A, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|B Chain B, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|C Chain C, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPC|A Chain A, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|B Chain B, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|C Chain C, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
Length = 341
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 164 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 198
>pdb|1ET8|A Chain A, Crystal Structure Of Nitrite Reductase His255asn Mutant
From Alcaligenes Faecalis
pdb|1J9S|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9T|A Chain A, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|B Chain B, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|C Chain C, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
Length = 341
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 164 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 198
>pdb|3H56|A Chain A, Met150leuPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 336
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 164 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 198
>pdb|1L9Q|A Chain A, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|B Chain B, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|C Chain C, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 164 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 198
>pdb|1ET7|A Chain A, Crystal Structure Of Nitrite Reductase His255asp Mutant
From Alcaligenes Faecalis S-6
Length = 341
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 164 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 198
>pdb|1L9O|A Chain A, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|B Chain B, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|C Chain C, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
Length = 341
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 164 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 198
>pdb|1NTD|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase Mutant
M150e That Contains Zinc
Length = 343
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 170 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 204
>pdb|3H4F|A Chain A, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|B Chain B, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|C Chain C, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
Length = 336
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 164 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 198
>pdb|1ET5|A Chain A, Crystal Structure Of Nitrite Reductase Asp98asn Mutant
From Alcaligenes Faecalis S-6
pdb|1J9Q|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9R|A Chain A, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|B Chain B, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|C Chain C, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|2PPF|A Chain A, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|B Chain B, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|C Chain C, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
Length = 341
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 164 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 198
>pdb|1L9S|A Chain A, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|B Chain B, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|C Chain C, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 164 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 198
>pdb|1L9T|A Chain A, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|B Chain B, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|C Chain C, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 164 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 198
>pdb|1NPJ|A Chain A, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|B Chain B, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|C Chain C, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPN|A Chain A, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|B Chain B, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|C Chain C, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|2PPD|A Chain A, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|B Chain B, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|C Chain C, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPE|A Chain A, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|B Chain B, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|C Chain C, Reduced H145a Mutant Of Afnir Exposed To No
Length = 343
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 170 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 204
>pdb|2B08|A Chain A, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|B Chain B, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|C Chain C, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
Length = 340
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 167 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 201
>pdb|1ZDQ|A Chain A, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|B Chain B, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|C Chain C, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDS|A Chain A, Crystal Structure Of Met150gly Afnir With Acetamide Bound
pdb|1ZDS|B Chain B, Crystal Structure Of Met150gly Afnir With Acetamide Bound
pdb|1ZDS|C Chain C, Crystal Structure Of Met150gly Afnir With Acetamide Bound
Length = 336
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 164 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 198
>pdb|1L9P|A Chain A, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|B Chain B, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|C Chain C, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
Length = 341
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 311 GCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAE 345
G L Y G Q+FYV NGK++K++ P +
Sbjct: 164 GKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGD 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,797,040
Number of Sequences: 62578
Number of extensions: 513755
Number of successful extensions: 1159
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 74
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)